Query 043885
Match_columns 765
No_of_seqs 414 out of 1826
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 2E-224 3E-229 1923.6 70.3 756 1-761 1-759 (759)
2 PLN02993 lupeol synthase 100.0 4E-221 9E-226 1899.3 71.3 756 1-761 1-759 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 1E-214 3E-219 1762.6 44.1 756 1-761 1-758 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2E-152 4E-157 1329.0 56.8 630 107-754 2-634 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 3E-142 7E-147 1252.1 56.7 633 102-754 1-634 (634)
6 TIGR01787 squalene_cyclas squa 100.0 4E-141 8E-146 1233.1 56.5 617 101-756 1-621 (621)
7 TIGR01507 hopene_cyclase squal 100.0 7E-140 1E-144 1222.6 58.8 612 96-757 12-632 (635)
8 COG1657 SqhC Squalene cyclase 100.0 3.4E-66 7.4E-71 574.8 18.6 511 189-757 1-513 (517)
9 cd02889 SQCY Squalene cyclase 100.0 3.3E-46 7.1E-51 409.7 31.7 347 393-754 2-348 (348)
10 TIGR01507 hopene_cyclase squal 100.0 3.5E-39 7.6E-44 377.1 33.6 503 101-695 63-629 (635)
11 PLN03012 Camelliol C synthase 100.0 1.9E-39 4.1E-44 378.2 30.7 490 102-663 149-723 (759)
12 PLN02993 lupeol synthase 100.0 1.2E-37 2.6E-42 363.9 32.3 486 101-663 148-723 (763)
13 TIGR03463 osq_cycl 2,3-oxidosq 100.0 3E-36 6.4E-41 352.8 31.9 481 102-664 44-606 (634)
14 TIGR01787 squalene_cyclas squa 100.0 1.2E-33 2.7E-38 330.4 36.4 476 101-665 47-591 (621)
15 cd02892 SQCY_1 Squalene cyclas 100.0 5.9E-32 1.3E-36 318.7 31.9 477 101-663 47-605 (634)
16 cd00688 ISOPREN_C2_like This g 100.0 7.1E-27 1.5E-31 246.3 29.2 295 393-754 2-300 (300)
17 cd02889 SQCY Squalene cyclase 99.9 4.8E-23 1E-27 226.2 22.3 222 443-725 1-261 (348)
18 cd02897 A2M_2 Proteins similar 99.9 1.3E-21 2.8E-26 210.5 26.4 263 418-754 21-292 (292)
19 cd02896 complement_C3_C4_C5 Pr 99.9 2.9E-21 6.3E-26 208.4 24.3 268 419-754 22-297 (297)
20 KOG0497 Oxidosqualene-lanoster 99.9 4.2E-21 9E-26 216.2 19.5 490 101-663 148-722 (760)
21 cd00688 ISOPREN_C2_like This g 99.8 9.7E-19 2.1E-23 184.4 25.0 244 387-694 49-299 (300)
22 cd02890 PTase Protein prenyltr 99.8 2.5E-17 5.4E-22 176.7 25.9 279 393-752 2-284 (286)
23 cd02890 PTase Protein prenyltr 99.8 1.2E-17 2.5E-22 179.3 20.2 199 485-736 25-226 (286)
24 PLN03201 RAB geranylgeranyl tr 99.7 2.3E-16 4.9E-21 171.5 21.7 222 442-736 9-231 (316)
25 cd02894 GGTase-II Geranylgeran 99.7 1.8E-15 3.8E-20 162.7 26.5 281 392-752 3-285 (287)
26 cd02894 GGTase-II Geranylgeran 99.7 9.7E-16 2.1E-20 164.7 19.7 193 490-736 33-227 (287)
27 PF13249 Prenyltrans_2: Prenyl 99.6 2.7E-16 6E-21 144.5 7.6 109 521-662 1-113 (113)
28 PF13249 Prenyltrans_2: Prenyl 99.6 5.2E-16 1.1E-20 142.6 8.4 110 598-723 1-112 (113)
29 cd02896 complement_C3_C4_C5 Pr 99.6 3E-14 6.4E-19 154.0 21.9 226 392-694 54-296 (297)
30 cd02895 GGTase-I Geranylgerany 99.6 1.1E-13 2.4E-18 150.0 26.3 299 393-752 2-305 (307)
31 PF13243 Prenyltrans_1: Prenyl 99.6 3.2E-16 7E-21 143.5 3.3 108 594-718 1-108 (109)
32 PLN03201 RAB geranylgeranyl tr 99.6 3.8E-13 8.3E-18 146.3 26.7 280 391-754 9-291 (316)
33 cd02897 A2M_2 Proteins similar 99.6 1.7E-13 3.6E-18 147.7 23.4 224 392-694 51-291 (292)
34 cd02893 FTase Protein farnesyl 99.6 6.1E-13 1.3E-17 143.8 27.2 282 393-752 2-297 (299)
35 PF13243 Prenyltrans_1: Prenyl 99.5 1.3E-15 2.9E-20 139.5 2.2 105 102-213 1-105 (109)
36 cd02893 FTase Protein farnesyl 99.5 1.1E-11 2.4E-16 134.1 26.3 246 376-694 33-298 (299)
37 cd02895 GGTase-I Geranylgerany 99.5 2.4E-12 5.2E-17 139.7 21.0 211 488-736 28-247 (307)
38 cd02891 A2M_like Proteins simi 99.5 1.4E-11 3E-16 131.4 24.4 254 421-754 24-282 (282)
39 PF07678 A2M_comp: A-macroglob 99.4 5.3E-12 1.1E-16 132.9 20.0 219 482-755 22-245 (246)
40 PLN02710 farnesyltranstransfer 99.4 6.9E-12 1.5E-16 140.3 20.3 204 489-754 74-281 (439)
41 KOG0366 Protein geranylgeranyl 99.4 4.1E-12 8.9E-17 129.3 15.5 173 517-736 68-241 (329)
42 TIGR02474 pec_lyase pectate ly 99.4 4E-12 8.8E-17 134.4 14.1 155 487-658 43-223 (290)
43 PLN02710 farnesyltranstransfer 99.4 1.9E-10 4.1E-15 128.8 26.0 237 391-696 45-282 (439)
44 cd02891 A2M_like Proteins simi 99.1 3E-10 6.6E-15 121.2 12.7 124 588-717 45-172 (282)
45 COG5029 CAL1 Prenyltransferase 99.0 2.6E-09 5.6E-14 112.1 13.2 176 516-736 76-254 (342)
46 COG5029 CAL1 Prenyltransferase 99.0 2.2E-08 4.9E-13 105.2 18.1 210 417-698 101-317 (342)
47 PF07678 A2M_comp: A-macroglob 98.9 3.9E-08 8.4E-13 103.6 18.0 222 395-694 2-243 (246)
48 COG1657 SqhC Squalene cyclase 98.9 2.8E-08 6E-13 112.6 15.2 221 485-757 199-453 (517)
49 TIGR02474 pec_lyase pectate ly 98.8 1.2E-07 2.6E-12 100.7 14.7 153 567-722 45-225 (290)
50 KOG0367 Protein geranylgeranyl 98.8 6.3E-07 1.4E-11 93.6 19.1 294 390-754 11-319 (347)
51 KOG0366 Protein geranylgeranyl 98.7 7.6E-07 1.7E-11 91.4 19.4 218 406-699 80-305 (329)
52 KOG0365 Beta subunit of farnes 98.5 1.4E-06 3E-11 92.6 14.2 170 509-725 114-290 (423)
53 KOG0365 Beta subunit of farnes 98.5 8.4E-06 1.8E-10 86.8 18.8 207 392-660 74-287 (423)
54 PF00432 Prenyltrans: Prenyltr 98.5 2.9E-07 6.3E-12 70.7 5.2 43 151-193 2-44 (44)
55 KOG0367 Protein geranylgeranyl 98.4 4.1E-05 8.9E-10 80.3 20.0 142 517-698 176-322 (347)
56 PF00432 Prenyltrans: Prenyltr 98.1 4.7E-06 1E-10 64.0 5.5 43 642-696 2-44 (44)
57 PF09492 Pec_lyase: Pectic aci 98.1 7.2E-06 1.6E-10 87.4 7.2 152 566-723 39-221 (289)
58 COG1689 Uncharacterized protei 98.0 7.9E-05 1.7E-09 75.0 13.7 227 442-730 7-255 (274)
59 COG1689 Uncharacterized protei 98.0 0.0005 1.1E-08 69.4 17.9 128 517-694 141-270 (274)
60 PF09492 Pec_lyase: Pectic aci 97.7 5.5E-05 1.2E-09 80.8 6.6 158 486-660 37-220 (289)
61 TIGR01577 oligosac_amyl oligos 97.6 0.0035 7.7E-08 74.8 20.5 273 422-737 299-599 (616)
62 PF07470 Glyco_hydro_88: Glyco 97.3 0.0039 8.4E-08 68.7 15.1 280 420-757 24-335 (336)
63 PLN02592 ent-copalyl diphospha 97.3 0.051 1.1E-06 66.0 25.0 82 121-212 91-175 (800)
64 PLN02592 ent-copalyl diphospha 97.3 0.011 2.5E-07 71.5 19.4 91 594-698 284-376 (800)
65 PF01122 Cobalamin_bind: Eukar 97.2 0.0039 8.5E-08 67.8 13.1 106 564-695 185-293 (326)
66 KOG1366 Alpha-macroglobulin [P 97.1 0.0062 1.3E-07 77.8 14.9 210 484-759 999-1215(1436)
67 PLN02279 ent-kaur-16-ene synth 96.6 0.028 6.1E-07 68.3 15.1 255 387-714 30-302 (784)
68 PF07470 Glyco_hydro_88: Glyco 96.2 0.052 1.1E-06 59.8 12.6 242 422-695 71-332 (336)
69 TIGR01535 glucan_glucosid gluc 96.0 0.67 1.5E-05 55.6 21.8 287 422-759 299-630 (648)
70 PLN02279 ent-kaur-16-ene synth 95.9 0.42 9.2E-06 58.4 19.4 58 151-212 74-135 (784)
71 cd00249 AGE AGE domain; N-acyl 95.4 1.5 3.2E-05 49.0 20.3 106 417-534 49-158 (384)
72 PF01122 Cobalamin_bind: Eukar 95.3 0.042 9.1E-07 59.9 7.4 124 568-725 148-280 (326)
73 TIGR01577 oligosac_amyl oligos 94.3 1.7 3.8E-05 52.1 18.3 118 489-632 299-425 (616)
74 KOG1366 Alpha-macroglobulin [P 93.6 0.62 1.3E-05 60.3 13.2 54 564-633 1157-1210(1436)
75 TIGR01535 glucan_glucosid gluc 91.6 1.3 2.7E-05 53.3 11.5 123 475-633 290-415 (648)
76 cd00249 AGE AGE domain; N-acyl 87.3 53 0.0011 36.5 26.5 64 392-455 78-152 (384)
77 COG3387 SGA1 Glucoamylase and 87.0 11 0.00023 45.3 14.6 97 626-729 483-580 (612)
78 PF07944 DUF1680: Putative gly 86.6 41 0.00088 39.6 19.0 144 440-601 10-157 (520)
79 COG4225 Predicted unsaturated 86.3 19 0.00041 39.7 14.6 252 324-610 39-309 (357)
80 PF10022 DUF2264: Uncharacteri 84.7 74 0.0016 35.7 19.6 222 420-702 108-351 (361)
81 PF10022 DUF2264: Uncharacteri 80.0 1.1E+02 0.0024 34.4 18.4 148 472-660 95-253 (361)
82 COG1331 Highly conserved prote 77.5 93 0.002 37.6 17.0 226 440-724 182-454 (667)
83 COG4225 Predicted unsaturated 75.9 84 0.0018 34.8 14.9 226 437-695 98-349 (357)
84 PRK01631 hypothetical protein; 66.3 4.5 9.8E-05 34.8 2.2 50 34-102 20-69 (76)
85 PF07221 GlcNAc_2-epim: N-acyl 62.6 26 0.00055 38.7 8.0 95 565-663 20-127 (346)
86 COG2373 Large extracellular al 58.9 42 0.00091 44.7 10.0 92 562-656 1167-1268(1621)
87 cd04791 LanC_SerThrkinase Lant 55.7 2.9E+02 0.0063 29.7 22.1 83 436-535 100-183 (321)
88 COG1331 Highly conserved prote 52.5 1.2E+02 0.0027 36.5 11.6 131 423-581 413-550 (667)
89 PRK02539 hypothetical protein; 51.4 16 0.00034 32.2 3.1 49 34-101 21-69 (85)
90 cd04794 euk_LANCL eukaryotic L 51.3 3.7E+02 0.008 29.5 15.0 196 490-723 4-208 (343)
91 COG2373 Large extracellular al 51.2 43 0.00093 44.7 8.3 100 484-607 1167-1268(1621)
92 PF00723 Glyco_hydro_15: Glyco 50.3 2.4E+02 0.0051 32.4 13.5 52 485-539 123-176 (448)
93 PF07944 DUF1680: Putative gly 47.7 37 0.00081 39.9 6.5 81 566-650 60-157 (520)
94 PRK01546 hypothetical protein; 45.5 22 0.00048 30.9 3.0 49 34-101 22-70 (79)
95 PF07221 GlcNAc_2-epim: N-acyl 42.2 68 0.0015 35.3 7.2 38 418-455 78-117 (346)
96 PF05979 DUF896: Bacterial pro 42.0 12 0.00025 31.5 0.8 46 34-98 19-64 (65)
97 PLN00119 endoglucanase 39.5 4.2E+02 0.009 31.2 13.1 38 420-457 9-50 (489)
98 COG3387 SGA1 Glucoamylase and 38.2 27 0.00058 42.0 3.4 62 684-749 289-351 (612)
99 COG4224 Uncharacterized protei 36.2 61 0.0013 27.9 4.1 50 34-102 21-70 (77)
100 PF00759 Glyco_hydro_9: Glycos 34.5 5.3E+02 0.012 29.3 13.2 20 515-534 98-117 (444)
101 PLN02909 Endoglucanase 34.1 4E+02 0.0086 31.3 11.9 23 513-535 122-144 (486)
102 PF11329 DUF3131: Protein of u 31.8 3.2E+02 0.0069 30.9 10.2 82 415-501 28-119 (367)
103 PLN02613 endoglucanase 27.6 6.2E+02 0.013 29.9 12.0 22 513-534 114-135 (498)
104 KOG1062 Vesicle coat complex A 23.6 3.1E+02 0.0067 33.9 8.6 106 324-453 292-397 (866)
105 cd04792 LanM-like LanM-like pr 23.4 1.5E+03 0.032 28.1 19.6 81 437-535 606-687 (825)
106 cd04791 LanC_SerThrkinase Lant 22.2 9.7E+02 0.021 25.5 14.3 83 510-612 100-183 (321)
107 PF08124 Lyase_8_N: Polysaccha 21.1 1.1E+03 0.024 25.8 13.0 69 585-654 80-149 (324)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.5e-224 Score=1923.64 Aligned_cols=756 Identities=54% Similarity=1.035 Sum_probs=740.0
Q ss_pred CceeeeeCCCC-CCcccccCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCC
Q 043885 1 MWKLKLSEGIN-EPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQ 79 (765)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~gr~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~ 79 (765)
|||||+++||+ +|||+|||||||||+||||||+|||||+++||++|++|+.|||++|+|+||||||||+|||++++ +
T Consensus 1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~~--~ 78 (759)
T PLN03012 1 MWKLKIAEGNGDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQFLKEKKFEQ--R 78 (759)
T ss_pred CCceEeCCCCCCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHhccCccc--C
Confidence 99999999865 89999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcccccccccccccHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 043885 80 LPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYL 159 (765)
Q Consensus 80 ~~~~~~~~~~~~~~~~e~~~~al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl 159 (765)
||+||+++ +++||+|++.++++++++||+++|.+||||++|++||+|++|++||++|++|++|+++++++++||+|||
T Consensus 79 ~p~~~~~~--~~~~~~~~~~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~~~~ei~ryl 156 (759)
T PLN03012 79 IAPAKVED--AEKITFEIATNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQDHRKEILRYI 156 (759)
T ss_pred CCcccCCC--CcccchHHHHHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCccccccCCCcchhhhHHHHHHHHHcCCCCCCC-chHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCC
Q 043885 160 YNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGG-DGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGN 238 (765)
Q Consensus 160 ~~~Qn~DGGWgl~~~~~s~m~~Tv~~Y~aLrllG~~~~~~-~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~ 238 (765)
+||||+|||||||++|+|+|||||+||+||||||+++|++ +++|+|||+||++||||+++|+|||||||+||+|+|+++
T Consensus 157 ~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~lG~y~W~g~ 236 (759)
T PLN03012 157 YCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSILGVFDWSGS 236 (759)
T ss_pred HHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccCCC
Confidence 9999999999999999999999999999999999999976 579999999999999999999999999999999999999
Q ss_pred CCCCcchhccCCCCCCCCCcccccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCC
Q 043885 239 NPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQ 318 (765)
Q Consensus 239 ~~lPpEl~llP~~~P~~~~~~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p 318 (765)
|||||||||||+|+||||++||||||+||+||||||+|||++|++|++.+||+|||++||++|||.++|+.||++|+|||
T Consensus 237 np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p 316 (759)
T PLN03012 237 NPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCP 316 (759)
T ss_pred CCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhhhhccCCCH-HHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCCcHHHHHHHH
Q 043885 319 HPMFQDMLWNFSHKVAEPLLKKWPFS-KIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLA 397 (765)
Q Consensus 319 ~~~~~~~~~~~l~~~~e~~~~~~p~~-~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~~~~~~~~l~ 397 (765)
|+++++++|..|++++||++..||++ +||++|++++++||++||++|.|+|++||+++|+||+||+++|+||+||+|++
T Consensus 317 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ 396 (759)
T PLN03012 317 HPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLL 396 (759)
T ss_pred chHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999999999977 69999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCC
Q 043885 398 RIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPF 477 (765)
Q Consensus 398 ~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f 477 (765)
||.||+|+++|||+||+| +||+|||||++|||+++|+++++.++|+||++||+++|+++|++|||..+|||++||||+|
T Consensus 397 ri~d~lw~~~dGm~~q~~-gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~F 475 (759)
T PLN03012 397 RISDYLWIAEDGMKMQSF-GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTF 475 (759)
T ss_pred HhhhcEEEeCCceEEcCC-CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccc
Confidence 999999999999999999 9999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccccccccc
Q 043885 478 SSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGE 557 (765)
Q Consensus 478 s~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~ 557 (765)
|+.|++|||+||||++|+|+++++.++++.+|.++..+++++||+||++|||+||||++||.++++.|+|.|||+|.|+|
T Consensus 476 s~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d 555 (759)
T PLN03012 476 SDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFAD 555 (759)
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcC
Confidence 99999999999999999999998888777888899999999999999999999999999999999999999999999999
Q ss_pred ccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCC
Q 043885 558 SIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKY 637 (765)
Q Consensus 558 ~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~ 637 (765)
+|+||+|+|||+++|+||..|++.+|.+|.++|+++|+||++||++.|++||||+|+||+||+|||++||.||.++|+++
T Consensus 556 ~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~ 635 (759)
T PLN03012 556 IVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTF 635 (759)
T ss_pred eecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccC
Confidence 99999999999999999999998889998889999999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCc
Q 043885 638 ENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQM 717 (765)
Q Consensus 638 ~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~ 717 (765)
.++++|+|||+||+++|++||||||++.||.+++|+++++++|+++||||||+||+++|++++++++|+||++||+++|+
T Consensus 636 ~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~ 715 (759)
T PLN03012 636 NDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQL 715 (759)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHccc
Confidence 78899999999999999999999999999999999998778899999999999999999988788889999999999999
Q ss_pred CCCCCCCCccccccCCccccccCCccchHHHHHHHHHHHhccCC
Q 043885 718 ENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP 761 (765)
Q Consensus 718 ~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~~~ 761 (765)
+||+|+|++++|+||++|||+||+||++|||||||+|+++++++
T Consensus 716 ~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (759)
T PLN03012 716 ENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRARVPLP 759 (759)
T ss_pred CCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999998764
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=4.3e-221 Score=1899.31 Aligned_cols=756 Identities=54% Similarity=1.036 Sum_probs=737.7
Q ss_pred CceeeeeCCCC-CCcccccCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCC
Q 043885 1 MWKLKLSEGIN-EPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQ 79 (765)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~gr~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~ 79 (765)
|||||+++||+ +|||+|||||||||+||||||+|||||+++||++|++|+.|||++|||+||||||||.|||++++ +
T Consensus 1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~ 78 (763)
T PLN02993 1 MWKLKIGEGNGEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGCSDLLWRMQFLKEAKFEQ--V 78 (763)
T ss_pred CCceEeCCCCCCCcceecccCcCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHhccCccc--C
Confidence 99999999865 89999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcccccccccccccHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 043885 80 LPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYL 159 (765)
Q Consensus 80 ~~~~~~~~~~~~~~~~e~~~~al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl 159 (765)
||+||+++ +++||+|++.++++++++||+++|.+||||++|++||+|++|++||++|++|++|+++++++++||+|||
T Consensus 79 ~p~~~~~~--~~~~~~~~~~~a~~ra~~~l~~lQ~~DGhW~~e~~g~~fl~~~~Vi~~~~~g~~~~~~~~~~~~ei~ryl 156 (763)
T PLN02993 79 IPPVKIDR--GEEITYETATNALRRGVSFFSALQASDGHWPGEITGPLFFLPPLVFCLYITGHLEEVFDAEHRKEMLRHI 156 (763)
T ss_pred CCcccCCC--CccccHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCccccccCCCcchhhhHHHHHHHHHcCCCCCCC-chHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCC
Q 043885 160 YNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGG-DGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGN 238 (765)
Q Consensus 160 ~~~Qn~DGGWgl~~~~~s~m~~Tv~~Y~aLrllG~~~~~~-~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~ 238 (765)
++|||+|||||||++|+|+|||||+||+||||+|+++|+| +|+|+|||+||++||||+++|+|||||||+||+|+|+++
T Consensus 157 ~~~Q~~DGGWgl~~eg~s~~~~Tv~~Y~aLRllG~~~d~~~~p~m~rAR~~Il~~GGa~~~~~wtK~wLAllG~y~W~g~ 236 (763)
T PLN02993 157 YCHQNEDGGWGLHIESKSVMFCTVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIPSWGKFWLSILGIYDWSGT 236 (763)
T ss_pred HHhccCCCCcccccCCCccchHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHcCCcccCchHHHHHHHHcCCcccCCC
Confidence 9999999999999999999999999999999999999955 599999999999999999999999999999999999999
Q ss_pred CCCCcchhccCCCCCCCCCcccccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCC
Q 043885 239 NPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQ 318 (765)
Q Consensus 239 ~~lPpEl~llP~~~P~~~~~~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p 318 (765)
|||||||||||+|+||||++||||||+||+||||||++||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|
T Consensus 237 ~p~PpElwLLP~~~P~hp~~~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p 316 (763)
T PLN02993 237 NPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYP 316 (763)
T ss_pred CCCChhHHHccCcCCccHHHhHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhhhhccCCCH-HHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCCcHHHHHHHH
Q 043885 319 HPMFQDMLWNFSHKVAEPLLKKWPFS-KIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLA 397 (765)
Q Consensus 319 ~~~~~~~~~~~l~~~~e~~~~~~p~~-~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~~~~~~~~l~ 397 (765)
|+++++++|+.+++++||++.+||++ +||++|++++++||++||++|+|+||+|||++||||+||+++|+||+|++|++
T Consensus 317 ~~~~~~~~~~~l~~~~~~~l~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ 396 (763)
T PLN02993 317 HPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLA 396 (763)
T ss_pred chHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999999999988 79999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCC
Q 043885 398 RIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPF 477 (765)
Q Consensus 398 ~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f 477 (765)
+|.||+|+++|||+||+| +||+|||||++|||+++|++++++++|+||++||+++|+++|++|||..++||++||||+|
T Consensus 397 ri~d~lw~~edgm~~q~~-gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~F 475 (763)
T PLN02993 397 RIPDYMWVAEDGMKMQSF-GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTL 475 (763)
T ss_pred HhhhcEEEeCCceEEcCC-CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcC
Confidence 999999999999999999 9999999999999999999877899999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccccccccc
Q 043885 478 SSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGE 557 (765)
Q Consensus 478 s~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~ 557 (765)
|+.|++|||+||||++|+|+++++++|.+.+|+++..+++++||+||++|||+||||++||.++++.|+|.|||+|.|++
T Consensus 476 s~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~ 555 (763)
T PLN02993 476 SDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFAN 555 (763)
T ss_pred ccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcC
Confidence 99999999999999999999999888877788889999999999999999999999999999999999999999999999
Q ss_pred ccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCC
Q 043885 558 SIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKY 637 (765)
Q Consensus 558 ~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~ 637 (765)
+|+||+|+|||++||++|+.+++.+|+++.++|+++|+||++||++.|++||||+|+||+||+|||++||.||.++|.++
T Consensus 556 ~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~ 635 (763)
T PLN02993 556 TMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTY 635 (763)
T ss_pred cccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCC
Confidence 99999999999999999999988789998899999999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCc
Q 043885 638 ENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQM 717 (765)
Q Consensus 638 ~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~ 717 (765)
.++++|+|||+||+++|++||||||++.||.+++|++++++.|+++||||||+||+++|+.++++++|+||++||+++|+
T Consensus 636 ~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~ 715 (763)
T PLN02993 636 NDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQL 715 (763)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC
Confidence 67799999999999999999999999999999999988778899999999999999999987777789999999999999
Q ss_pred CCCCCCCCccccccCCccccccCCccchHHHHHHHHHHHhccCC
Q 043885 718 ENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP 761 (765)
Q Consensus 718 ~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~~~ 761 (765)
+||+|+|++++|+||++|||+||+||++|||||||+|++.....
T Consensus 716 ~~G~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (763)
T PLN02993 716 ENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKAAFIT 759 (763)
T ss_pred CCCCCCCcceeceECccceeccCccchHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999987644
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-214 Score=1762.60 Aligned_cols=756 Identities=60% Similarity=1.099 Sum_probs=744.0
Q ss_pred CceeeeeCC-CCCCcccccCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCC
Q 043885 1 MWKLKLSEG-INEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQ 79 (765)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~gr~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~ 79 (765)
||||||+++ +.+|+|+|||||+|||+||||+++|||||+|+||+||++|..||+..|.|+||++||||.+|+++++ .
T Consensus 1 mw~l~~~~~~~~~~~l~~tn~~~grq~W~~d~~~~~~e~~~~v~~~r~~f~~~~~~~k~s~dl~~r~qf~~E~~~~q--~ 78 (760)
T KOG0497|consen 1 MWRLKIGEGAGEDPHLFTTNNFVGRQTWEFDADAGGPEELAYVEEARANFSDNRSREKASLDLLWRMQFLREKKFEQ--V 78 (760)
T ss_pred CcceeeccccCCCCcccccccccCceeEEecCCCCCcchHHHHHHHHHhcCCcchhHHHhcccchhhhhhhhhhhhh--c
Confidence 999999997 5589999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcccccccccccccHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 043885 80 LPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYL 159 (765)
Q Consensus 80 ~~~~~~~~~~~~~~~~e~~~~al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl 159 (765)
||+|+++| +++||+|...+++++++.|+..+|.+||||+++++||+|+++++||++||+|+++.+++.||++|++|||
T Consensus 79 ~p~v~~~d--~e~i~~e~~~~~lrrgi~f~~~LQa~DGhwp~~~~GPlf~~~~~v~~~yitg~l~~~~~~ehr~Eliry~ 156 (760)
T KOG0497|consen 79 IPRVKIED--AEEITYEDATTALRRGLLFFSALQAPDGHWPGEYSGPLFFLPPLVICLYITGHLEKIFTAEHRKEILRYI 156 (760)
T ss_pred CCCccccc--cceeehhhhhhhhhhhHHHHHHhcCCCCCCCCCCCCChhhhhhhhheeeecccCCcccCcccHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCccccccCCCcchhhhHHHHHHHHHcCCCCCCCc-hHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCC
Q 043885 160 YNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGD-GAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGN 238 (765)
Q Consensus 160 ~~~Qn~DGGWgl~~~~~s~m~~Tv~~Y~aLrllG~~~~~~~-~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~ 238 (765)
+||||+|||||+|++++|+|||||+||++||++|+.+++++ ..|.|||+||++||||+++|+|||+|||++|+|+|+|+
T Consensus 157 ynhqn~DGGWGlhve~~S~mF~TvlNYi~LRilG~~~~~~~~~a~~~aR~wild~GGa~~~p~wgK~wLsvLgvydWsG~ 236 (760)
T KOG0497|consen 157 YNHQNEDGGWGLHVEGKSTMFCTVLNYICLRILGEGPDHGDESACKRARKWILDHGGATYIPSWGKFWLSVLGVYDWSGV 236 (760)
T ss_pred HhccCCCCCccccccCceeEEEeeehheeheeeccCCCCCchhHHHHHHHHHHHcCCccccchhhHHHHHhcccccCcCC
Confidence 99999999999999999999999999999999999999865 36999999999999999999999999999999999999
Q ss_pred CCCCcchhccCCCCCCCCCcccccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCC
Q 043885 239 NPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQ 318 (765)
Q Consensus 239 ~~lPpEl~llP~~~P~~~~~~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p 318 (765)
||+|||+||||+|+|+||+++|||+|+||+||||+|++||++|.+|++.+||+|||++||++|+|.++|+.|+|+|+|||
T Consensus 237 np~pPElwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyp 316 (760)
T KOG0497|consen 237 NPLPPELWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYP 316 (760)
T ss_pred CCCCchhhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCCcHHHHHHHHH
Q 043885 319 HPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLAR 398 (765)
Q Consensus 319 ~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~~~~~~~~l~~ 398 (765)
|+.+||++|+.|+++.|+++.+||.+-+|++|++.+|++||+|||+|+|||||||+|+++|||||+++|++.+||+|+.|
T Consensus 317 hs~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~~Fkkhl~R 396 (760)
T KOG0497|consen 317 HSLLQDLLWALLHKFSEPLLNRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSDAFKKHLAR 396 (760)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchHHHHHHhcc
Confidence 99999999999999999999999994459999999999999999999999999999999999999999999999999999
Q ss_pred HhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCC
Q 043885 399 IKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFS 478 (765)
Q Consensus 399 l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs 478 (765)
++||||+++|||+||+++ ||+|||+|++|||.++++.+|+.++|+||++||+++|+++|++||..++|||++||||+||
T Consensus 397 i~d~lw~gedGmkmq~~~-sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS 475 (760)
T KOG0497|consen 397 IPDFLWIAEDGMKMQGFN-SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFS 475 (760)
T ss_pred ccCeEEEcCCCceEeecc-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheecccccccccc
Confidence 999999999999999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccc
Q 043885 479 SLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGES 558 (765)
Q Consensus 479 ~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~ 558 (765)
+.++|||+|||||+++++++.++.+|.+++|++++.+++.+||+.|+++|+.+||+++||+.++..|||.+||+|+|+++
T Consensus 476 ~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~ 555 (760)
T KOG0497|consen 476 DRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDI 555 (760)
T ss_pred ccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCC
Q 043885 559 IIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYE 638 (765)
Q Consensus 559 ~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~ 638 (765)
|++++|++||+++|+||..|.+.+|+||.+||+.+|.+|++||++.|.+||||||+||+||+|+|+|++.||+++|+++.
T Consensus 556 ~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~ 635 (760)
T KOG0497|consen 556 MVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYE 635 (760)
T ss_pred eeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcC
Q 043885 639 NSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQME 718 (765)
Q Consensus 639 ~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~ 718 (765)
++++++|||+||+++|++|||||||+.||+.++|++++|++|+++||+||||+|+.+|++++||-+++||++.|+++|.+
T Consensus 636 nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~ 715 (760)
T KOG0497|consen 636 NCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLE 715 (760)
T ss_pred ccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCCCccccccCCccccccCCccchHHHHHHHHHHHhccCC
Q 043885 719 NGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP 761 (765)
Q Consensus 719 dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~~~ 761 (765)
||+|||++++|+|+++|+|||+.|||+|||||||+|++.+...
T Consensus 716 nGdfpqq~i~g~f~~~~~~~y~~yr~~F~~waL~~y~~~~~~~ 758 (760)
T KOG0497|consen 716 NGDFPQQEIEGVFNKNCMIHYPTYRNIFPIWALGEYRKAYRLR 758 (760)
T ss_pred cCCcchhHHHHHhhhhhhhccchhhhhccHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999987643
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=2.1e-152 Score=1328.96 Aligned_cols=630 Identities=38% Similarity=0.701 Sum_probs=590.9
Q ss_pred HHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcchhhhHHHH
Q 043885 107 RFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSY 186 (765)
Q Consensus 107 ~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m~~Tv~~Y 186 (765)
.+|+++|.+||||++|++|++|++|++||+||++| .+++++++++++|||+++||+|||||+|++++|+||+||+||
T Consensus 2 ~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~~---~~~~~~~~~~~~~yl~~~Q~~dGgWgl~~~~~~~~~~T~~~Y 78 (634)
T TIGR03463 2 ARLTETQQPAGCWEGEMIWCPVVTAQVAITRHVVG---RPPEPEQRAGIIRHFENSQLADGAWGLHPEAPGQVFTTVLNY 78 (634)
T ss_pred hhHHhcccCCCccccccCCccccCHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHHHHHHH
Confidence 58999999999999999999999999999999999 666789999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCchHHHHHHHHHHhc-CCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCCCCcccccccc
Q 043885 187 VGLRLLGERMDGGDGAIEKARKWILGR-GGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRL 265 (765)
Q Consensus 187 ~aLrllG~~~~~~~~~~~rAr~~Il~~-GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~~~~~~~~~R~ 265 (765)
+||||+|+++++ |+|+|||+||++| ||++++|+|||||||+||+|+|+++|+|||||||||+||||||++||||+|+
T Consensus 79 ~aLrl~G~~~~~--~~~~rAr~~i~~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~El~lLP~~~P~~~~~~~~~~R~ 156 (634)
T TIGR03463 79 VALRLLGVGKED--AGLARARQWLHAQPGGVLGSPTWGKFWLALLGLYGRGGLQPVPPELWLLPESLPFHPSRFYCHTRM 156 (634)
T ss_pred HHHHHcCCCCCC--HHHHHHHHHHHhCCCCcccCchHHHHHHHHcCcCCcccCCCCCHHHHHccccCCcCHHHHHHHhHH
Confidence 999999999998 9999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCCCchhHHHHHHHHHHHhhhhhccCCCHH
Q 043885 266 VLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSK 345 (765)
Q Consensus 266 v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~p~~~ 345 (765)
||+||+|||++||+++++|++.+||+|||++||++|+|.+.|+.|+++|.|+|+++++++++..|..+.+ +++.+
T Consensus 157 v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~l~~~~~-----~~~~~ 231 (634)
T TIGR03463 157 VYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRTFWLRAANQVMYGYER-----LAGKQ 231 (634)
T ss_pred HHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcHHHHHHHHHHHHHhhc-----cCCHH
Confidence 9999999999999999999999999999999999999999999999999999999888888777755433 23456
Q ss_pred HHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCCcHHHHHHHHHHhhhheeccC-CceeeccCCCchhHHH
Q 043885 346 IRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAED-GMKMQAYNGSQLWDTA 424 (765)
Q Consensus 346 lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~~~~~~~~l~~l~~~l~~~~d-G~~~q~~~gs~~WDTa 424 (765)
||++|+++++++|++|+|+|+|++|+||+++++||+|++++|+||.+++|+++|.+|+|.++| ||++|+++ |++|||+
T Consensus 232 lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~~-s~~WDTa 310 (634)
T TIGR03463 232 LRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNGYN-SSEWDTA 310 (634)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEeeCC-CCchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 89999995 5569999
Q ss_pred HHHHHHHHcCCC-CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccc
Q 043885 425 FAVHAILSTNLV-DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEM 503 (765)
Q Consensus 425 lai~AL~~ag~~-~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~ 503 (765)
|+++||.++|+. ++++++|+||++||+++|+++++ |||..++||.++|||+|++.|++|||+||||++|+||+.+...
T Consensus 311 la~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~-gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~ 389 (634)
T TIGR03463 311 FAVQALAATPETAGRHRRMLERAARFLEANQMLEDT-AEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPL 389 (634)
T ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCC-CCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhc
Confidence 999999999974 46679999999999999998765 8999999999999999999999999999999999999987643
Q ss_pred cccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCC
Q 043885 504 SYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYP 583 (765)
Q Consensus 504 ~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p 583 (765)
+.. ..+++..+++++||+||+++||+||||++|+.++++.|||.+||+|.|+++++|+++++||+++|++|..+++..+
T Consensus 390 ~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~ 468 (634)
T TIGR03463 390 GLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHP 468 (634)
T ss_pred CCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCc
Confidence 210 0023567899999999999999999999999999999999999999999999999999999999999999987767
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccc
Q 043885 584 KHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGES 663 (765)
Q Consensus 584 ~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes 663 (765)
.++.++|+++|+||++||++.|++||+|++.||+|++|+|+++++||.++|.+. ++++++||++||+++|++|||||++
T Consensus 469 ~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg~~ 547 (634)
T TIGR03463 469 HVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWGEV 547 (634)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCccCc
Confidence 677778899999999999999999999999999999999999999999999875 5799999999999999999999999
Q ss_pred cccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccccccCCcc
Q 043885 664 YVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWR 743 (765)
Q Consensus 664 ~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr 743 (765)
+.||.++.|++ ++.|++++|||||+||+.+|+.+ ..+++||++||+++|++||+|++++++|+||++|||+||+||
T Consensus 548 ~~s~~~~~y~~--~~~S~~~~TA~Al~aL~~~g~~~--~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y~ 623 (634)
T TIGR03463 548 YESCLQARYVE--GKQSQAVMTSWALLALAEAGEGG--HDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLYL 623 (634)
T ss_pred cCccccccccC--CCCCcHHHHHHHHHHHHHcCCcC--CHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCccc
Confidence 99999999985 67899999999999999999764 357999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 043885 744 NIFPIWALGAF 754 (765)
Q Consensus 744 ~~fpl~ALg~y 754 (765)
++|||||||+|
T Consensus 624 ~~fpl~ALg~y 634 (634)
T TIGR03463 624 RYFPTWALAVC 634 (634)
T ss_pred hHhHHHHhhcC
Confidence 99999999997
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=3.4e-142 Score=1252.11 Aligned_cols=633 Identities=49% Similarity=0.900 Sum_probs=590.1
Q ss_pred HHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcchhh
Q 043885 102 LRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLN 181 (765)
Q Consensus 102 l~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m~~ 181 (765)
|+++.+||+++|.+||||++|++||+|++|++||+||++| .+++++++++++|||+++||+|||||+|++++|+||+
T Consensus 1 ~~~~~~~l~~~q~~dG~W~~e~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~l~~~q~~dGgw~~~~~~~~~~~~ 77 (634)
T cd02892 1 IRRALEFLLSLQAPDGHWPGELEGPLFITAEYILLLYILG---IPIDPEHRKEIARYLRNHQNPDGGWGLHHEGPSTMFG 77 (634)
T ss_pred ChHHHHHHHHhccCCCceecccCCcchhhHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHH
Confidence 4789999999999999999999999999999999999999 6667999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCCCCcccc
Q 043885 182 TVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWC 261 (765)
Q Consensus 182 Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~~~~~~~ 261 (765)
||+||+||||+|+++++ |+|+|||+||++|||++++|+|||||||++|+|+|+++|+|||||||||+|+||||++|||
T Consensus 78 T~~~Y~aLrl~G~~~~~--~~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~ 155 (634)
T cd02892 78 TVLNYVALRLLGVSPDD--PHMVKARNWILSHGGAARIPVWGKIWLALLGVYPWEGVPPLPPELWLLPSWLPFHPYKFWC 155 (634)
T ss_pred HHHHHHHHHHcCCCCCC--HHHHHHHHHHHHcCCcccccHHHHHHHHHcCccccccCCCCCHhHHhcCCcCCccHHHHHH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCCCchhHHHHHHHHHHHhhhhhccC
Q 043885 262 HTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKW 341 (765)
Q Consensus 262 ~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~ 341 (765)
|||+||+||+||+++||++|+++++..+|+|||.+||++|+|..+|+ +++|.++|+..+++.++..++. ++. .
T Consensus 156 ~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~----~ 228 (634)
T cd02892 156 WARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQRLFDALDRLLHW-YEP----L 228 (634)
T ss_pred HHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChHHHHHHHHHHHHH-HHh----c
Confidence 99999999999999999999999999999999999999999999998 7888888888777777666544 332 3
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccC-CCcHHHHHHHHHHhhhheeccCCceeeccCCCch
Q 043885 342 PFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVED-PNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQL 420 (765)
Q Consensus 342 p~~~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~-p~~~~~~~~l~~l~~~l~~~~dG~~~q~~~gs~~ 420 (765)
+++++|++|+++++++|++++++++++++.|++++++|+|++.++ |+||.+++|++++.+|+|..+||++++.+++||+
T Consensus 229 ~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~ 308 (634)
T cd02892 229 PPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQV 308 (634)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCch
Confidence 455699999999999999999999999999999999999998776 7999999999999999999999988888889999
Q ss_pred hHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHh
Q 043885 421 WDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLL 500 (765)
Q Consensus 421 WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l 500 (765)
|||||+++||+++|+.+++++.|+||++||+++|+. +++|||..++++.++|||+|++.+++|||+||||++|+||+.+
T Consensus 309 wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~-~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~ 387 (634)
T cd02892 309 WDTALAVQALLEAGLAPEFDPALKKALDWLLESQIL-DNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRL 387 (634)
T ss_pred HHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcC-CCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHh
Confidence 999999999999998867799999999999999993 3569999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccC
Q 043885 501 SEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTK 580 (765)
Q Consensus 501 ~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~ 580 (765)
...+.. |..++.+++++|++||+++||+||||++|+.+++..|++.++|.|.|+++++|+++++||+.++++|..++.
T Consensus 388 ~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~ 465 (634)
T cd02892 388 QELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGK 465 (634)
T ss_pred hccCCc--chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcc
Confidence 754431 455678999999999999999999999999998888888889999999999999999999999999999987
Q ss_pred cCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcc
Q 043885 581 HYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGW 660 (765)
Q Consensus 581 ~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGW 660 (765)
..+.++. +++++|+||++||++.|++||+|+|+|++|++|+|++++.||.++|..+.+++.+++|++||+++|++||||
T Consensus 466 ~~~~~r~-~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgW 544 (634)
T cd02892 466 LYPGHRR-EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGW 544 (634)
T ss_pred cCcchHH-HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCC
Confidence 6665554 788999999999999999999999999999999999999999999987446899999999999999999999
Q ss_pred ccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccccccC
Q 043885 661 GESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYS 740 (765)
Q Consensus 661 Ges~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~Y~ 740 (765)
++++.+|.++.|.+ ++.|++++|||||++|+.+|.. +..+++|+++||+++|+++|+|++++++|+|+++|||+||
T Consensus 545 ge~~~s~~~~~~~~--~~~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~ 620 (634)
T cd02892 545 GESYLSYEDKSYAG--GGRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYH 620 (634)
T ss_pred CCccccccCcccCC--CCCCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccC
Confidence 99999999988864 6789999999999999999876 3457999999999999999999999999998888999999
Q ss_pred CccchHHHHHHHHH
Q 043885 741 AWRNIFPIWALGAF 754 (765)
Q Consensus 741 ~Yr~~fpl~ALg~y 754 (765)
+||++|||||||+|
T Consensus 621 ~Y~~~fpl~ALg~y 634 (634)
T cd02892 621 NYRNYFPLWALGRY 634 (634)
T ss_pred chhhHhHHHHhhcC
Confidence 99999999999997
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=3.8e-141 Score=1233.09 Aligned_cols=617 Identities=42% Similarity=0.790 Sum_probs=564.6
Q ss_pred HHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcchh
Q 043885 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTML 180 (765)
Q Consensus 101 al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m~ 180 (765)
+|+++.+||+++|.+||||++|++||+|++|++||+||++| .+++ +++++++|||++|||+|||||+|++++|+||
T Consensus 1 ~~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~a~~i~~~~~~g---~~~~-~~~~~~~~~l~~~Q~~DGgW~~~~~~~~~~~ 76 (621)
T TIGR01787 1 TARRAVEFLLSLQAPDGYWWGELEGPLTLLAEYVLLCHIAD---TPLP-GYREKIVRYLRHHQNEDGGWGLHIGGKSTVF 76 (621)
T ss_pred CHHHHHHHHHHhccCCCceecccCCccccCHHHHHHHHHhc---CCCh-HHHHHHHHHHHHhcCCCCCeeCCcCCCcchH
Confidence 47899999999999999999999999999999999999999 4454 8899999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCCCCccc
Q 043885 181 NTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMW 260 (765)
Q Consensus 181 ~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~~~~~~ 260 (765)
+||+||+||||+|+++++ |+|+|||+||++|||++++|+|||||||++|+|+|+++|+|||||||||+|+||||+++|
T Consensus 77 ~Tv~aY~aLrl~G~~~~~--~~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~~~~~w 154 (621)
T TIGR01787 77 GTVLAYVALKILGMSPDD--PAMVRARNFILKQGGAVASPVFTKFWLALLGVYPWEGVPPLPPEIMLLPKWLPIHPSKSW 154 (621)
T ss_pred HHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccccCCCCCHhHHhcCcccCcCcchhh
Confidence 999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCCCchhHHHHHHHHHHHhhhhhcc
Q 043885 261 CHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKK 340 (765)
Q Consensus 261 ~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~ 340 (765)
||+|+|++||+|++++|++.|++| |+|||++| +++ .+.|+.|+++|+|+|+++++++++..+..+.+|++
T Consensus 155 ~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 224 (621)
T TIGR01787 155 CRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHSWLLRALYGLLNLFYHPFL-- 224 (621)
T ss_pred hhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHHHHHHHHHHHHhhcccccc--
Confidence 999999999999999999988877 69999999 877 46788899999999999888777655544444433
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccC-CCcHHHHHHHHHHhhhheeccCCceeeccCCCc
Q 043885 341 WPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVED-PNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQ 419 (765)
Q Consensus 341 ~p~~~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~-p~~~~~~~~l~~l~~~l~~~~dG~~~q~~~gs~ 419 (765)
.+.++++|++++++||++++ |+++|+++++|+|++.++ |+||.+++|+++|++|+|..+||+++|++ +||
T Consensus 225 --~~~a~~~a~~~~~~~~~~~g------~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~~-~s~ 295 (621)
T TIGR01787 225 --RKALRKRALQWLYEHIAADG------SIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQGT-GSQ 295 (621)
T ss_pred --cHHHHHHHHHHHHHHhccCC------CchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEecC-CCc
Confidence 23479999999999997655 789999999999998776 79999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHcCC--CCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHH
Q 043885 420 LWDTAFAVHAILSTNL--VDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVS 497 (765)
Q Consensus 420 ~WDTalai~AL~~ag~--~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL 497 (765)
+|||+|+++||+++|+ .+++++.|+||++||+++|++++++|||..+.++..+|||+||+.|++|||+|||+.+++++
T Consensus 296 vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~ 375 (621)
T TIGR01787 296 VWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKA 375 (621)
T ss_pred HHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHH
Confidence 9999999999999996 45668999999999999999988889999765565669999999999999999999998776
Q ss_pred HHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHh
Q 043885 498 VLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKS 577 (765)
Q Consensus 498 ~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~ 577 (765)
..+... +.+...+++++|++||+++||+||||++|+.+++..|+|.+||+|.|+|+|+|+++++||+++|+||..
T Consensus 376 ~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~ 450 (621)
T TIGR01787 376 VLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGA 450 (621)
T ss_pred HHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHH
Confidence 554321 245678999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCC
Q 043885 578 FTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDS 657 (765)
Q Consensus 578 ~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~D 657 (765)
++. +.++++++|+||++||++.|++||+|+|+||+||+|+|++++.+|.++|..+.+++.++||++||+++|++|
T Consensus 451 ~~~-----r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~D 525 (621)
T TIGR01787 451 FGH-----RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPD 525 (621)
T ss_pred hcC-----ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCC
Confidence 852 334567899999999999999999999999999999999999999999987545699999999999999999
Q ss_pred CccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccc-cCCccc
Q 043885 658 GGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGS-FTRNCM 736 (765)
Q Consensus 658 GGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~-f~~~~~ 736 (765)
|||||++.||.++.|.+ .+.|++++|||||+||++++..+ ..+++||++||+++|++||+|++++++|+ ||++||
T Consensus 526 GGWge~~~s~~~~~y~~--~~~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~ 601 (621)
T TIGR01787 526 GGWGEDCFSYEDPSYVG--SGGSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFY 601 (621)
T ss_pred CCCCcCCccccccccCC--CCCCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccce
Confidence 99999999999999976 45799999999999999999764 34799999999999999999999999999 559999
Q ss_pred cccCCccchHHHHHHHHHHH
Q 043885 737 ISYSAWRNIFPIWALGAFYN 756 (765)
Q Consensus 737 ~~Y~~Yr~~fpl~ALg~y~~ 756 (765)
|+|++||++|||||||+|++
T Consensus 602 i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 602 LKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred ecccccchhhHHHHHHHHhC
Confidence 99999999999999999975
No 7
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=6.9e-140 Score=1222.56 Aligned_cols=612 Identities=25% Similarity=0.391 Sum_probs=555.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCC
Q 043885 96 EAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEG 175 (765)
Q Consensus 96 e~~~~al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~ 175 (765)
+++.++++++.+||+++|.+||||++|++||+|++|++||+||++|.. . ++++++++|||+++||+|||||+|+++
T Consensus 12 ~~~~~a~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~g~~---~-~~~~~~~~~~l~~~Q~~DGgWg~~~~~ 87 (635)
T TIGR01507 12 ARTVEAIDRAVDYLLSCQKDEGYWWGELESNVTIEAEYVLLCHILDRV---D-RDRMEKIRNYLLHEQREDGTWALYPGG 87 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCcchhcHHHHHHHHHHCCC---c-HHHHHHHHHHHHHhccCCCCccCccCC
Confidence 467899999999999999999999999999999999999999999943 3 678999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCC
Q 043885 176 ESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTH 255 (765)
Q Consensus 176 ~s~m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~ 255 (765)
+|+||+||+||+|||++|+++++ |+|+|||+||++|||++++|+|||||||++|+|+|+++|+|||||||||+|+|||
T Consensus 88 ~~~~~~Tv~~Y~aLrl~G~~~~~--~~m~rAr~~I~~~GG~~~~~~~tk~~LAl~G~~~W~~~~~~P~El~llP~~~p~~ 165 (635)
T TIGR01507 88 PGDLSTTVEAYVALKYIGMSRDE--PPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWRGVPMVPPEIMLLPKRFPFN 165 (635)
T ss_pred CcchhHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHcCCcccccHHHHHHHHHcCCcCcccCCCCCHHHHhCCCcCCcc
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchhhhHHHHhccccccccCchhhhhh-hhhccCCCCccchhhhhhhccccccCCCCch-hHHHHHHHHHHH
Q 043885 256 PGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLR-EELYTRPYEKIDWNRARFLCAQEDLYRQHPM-FQDMLWNFSHKV 333 (765)
Q Consensus 256 ~~~~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr-~EL~~~p~~~i~w~~~R~~~a~~d~~~p~~~-~~~~~~~~l~~~ 333 (765)
|++||||+|+||+||+||+++||+.+++ .++| +|||.+||++ .|+.|++.| +++ +++.+...+ +.
T Consensus 166 ~~~~~~~~R~~~~P~~~l~~~r~~~~~~---~~~~~~eL~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~l-~~ 232 (635)
T TIGR01507 166 IYEFSSWARATVVPLSIVCSRKPVFPLP---ERARVPELYETDVPK-----PRRRGAKGG----TGWGIFDALDRAL-HG 232 (635)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCC---cccChHhhcCCChHH-----hcccCCccC----CcHHHHHHHHHHH-HH
Confidence 9999999999999999999999998876 3566 9999999854 466666555 334 455554444 33
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHhhhhcCCCcc-ceeechHHHHHHHhhcc---ccCCCcHHHHHHHHHHhhhheeccCC
Q 043885 334 AEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQ-YICIAGVNKVLNMLCRW---VEDPNSEAYKHHLARIKDYLWVAEDG 409 (765)
Q Consensus 334 ~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~-y~~i~~v~~~l~ml~~~---~~~p~~~~~~~~l~~l~~~l~~~~dG 409 (765)
++.+ ++..+|++|+++++++|++++|+++ |.+|.| +.++||+++ +..|+||.+++|++++++|+|..+||
T Consensus 233 ~~~l----~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g 306 (635)
T TIGR01507 233 YEKL----SVHPFRRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDS 306 (635)
T ss_pred HHhc----CCcHHHHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCc
Confidence 4432 2334999999999999999999888 999988 567776665 44599999999999999999999999
Q ss_pred ceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhh
Q 043885 410 MKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDT 489 (765)
Q Consensus 410 ~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~ 489 (765)
+++|++ +||+|||+|+++||.++|++++ +|.|+||++||+++|++. +|||..++++..+|||+|++.+++|||+||
T Consensus 307 ~~~~~~-~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~dd 382 (635)
T TIGR01507 307 WMFQAC-VSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDD 382 (635)
T ss_pred eEecCC-CCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchh
Confidence 999999 9999999999999999999876 899999999999999974 599999999999999999999999999999
Q ss_pred hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccccccccc--ccccCCccCc
Q 043885 490 TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGE--SIIDYQYVEC 567 (765)
Q Consensus 490 TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~--~~~d~~~~d~ 567 (765)
||++|+||..+. .| .++...+++++|++||+++||+||||++|+.+++..|++++| |+| +|+|+|++||
T Consensus 383 Ta~~L~AL~~~~-~~----~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~----f~d~~~~~D~~~~d~ 453 (635)
T TIGR01507 383 TAVVVWALNGLR-LP----DERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIP----FCDFGAVTDPPTADV 453 (635)
T ss_pred HHHHHHHHHHcC-CC----ccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCC----ccccccccCCCCccH
Confidence 999999998763 22 234567899999999999999999999999999999999998 776 8999999999
Q ss_pred HHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHH
Q 043885 568 TSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKAC 647 (765)
Q Consensus 568 Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav 647 (765)
|++++++|+.++.. + .+++|+||++||++.|++||+|+|+|++|++|+|++++++|.++|.+. .++.|+|||
T Consensus 454 Ta~~l~al~~~g~~-~------~~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv 525 (635)
T TIGR01507 454 TARVLECLGSFGYD-D------AWPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDT-REPYIQKAL 525 (635)
T ss_pred HHHHHHHHHHhCCC-c------hhHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCCc-ccHHHHHHH
Confidence 99999999988632 1 157999999999999999999999999999999999999999999875 689999999
Q ss_pred HHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcc
Q 043885 648 DFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEI 727 (765)
Q Consensus 648 ~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~ 727 (765)
+||+++|++||||||++.||.++.|.+ .+.|++++|||||+||.++|..+ .++|+||++||+++|++||+|+|+++
T Consensus 526 ~wL~~~Q~~DGGWge~~~sy~~~~~~g--~g~s~~s~TA~AL~AL~~ag~~~--~~~I~rav~~L~~~Q~~dG~W~e~~~ 601 (635)
T TIGR01507 526 AWLESHQNPDGGWGEDCRSYEDPAYAG--KGASTASQTAWALIALIAAGRAE--SEAARRGVQYLVETQRPDGGWDEPYY 601 (635)
T ss_pred HHHHHhcCCCCCCCCCCcccccccccC--CCCCcHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCCCCCCCccc
Confidence 999999999999999999999999975 46899999999999999999763 45799999999999999999999999
Q ss_pred ccc-cCCccccccCCccchHHHHHHHHHHHh
Q 043885 728 MGS-FTRNCMISYSAWRNIFPIWALGAFYNR 757 (765)
Q Consensus 728 ~g~-f~~~~~~~Y~~Yr~~fpl~ALg~y~~~ 757 (765)
+|+ ||++|||+||+||++|||||||+|++.
T Consensus 602 ~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~~ 632 (635)
T TIGR01507 602 TGTGFPGDFYLGYHMYRHVFPLLALARYKQA 632 (635)
T ss_pred ccCcccceeeecccchhhHhHHHHHHHHHHh
Confidence 999 999999999999999999999999984
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=100.00 E-value=3.4e-66 Score=574.82 Aligned_cols=511 Identities=29% Similarity=0.433 Sum_probs=430.0
Q ss_pred HHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCCCCcccccccchhh
Q 043885 189 LRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLL 268 (765)
Q Consensus 189 LrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~~~~~~~~~R~v~~ 268 (765)
||++|+...+ |+|.+||.+|+.+||+.+.+.|||++||++|.|.|. .+++|++.|+||.-+|+|+++|+||+|.+++
T Consensus 1 ~~~~g~~~~~--p~~~~a~~~~~~~gg~~~~~~~~k~~la~~~~y~w~-~~~~p~~~~~lp~~~p~~~~~~~~~~r~~~~ 77 (517)
T COG1657 1 LRPLGVPATD--PALLKARSFILWRGGISKSRIWTKCRLAVLGAYIWR-APSAPPWVMLLPNTLPVHFYQMSSWARSSTV 77 (517)
T ss_pred CCcccCCccc--HHHhccHhhhhhcCCccccchHHHHHHHHhcceeec-cCCCCchHhhCCCcccchHHHHHHHhhhccc
Confidence 5789977777 999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCCCchhHHHHHHHHHHHhhhhhccCCCHHHHH
Q 043885 269 PTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQ 348 (765)
Q Consensus 269 pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~ 348 (765)
| + +.| +-.++++.+ .| ..+++||++.--+.++..+.+..+ .....|+.+++.
T Consensus 78 p--~---------~~~----~~~~~~~~~-----------~~-~~~l~yp~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~ 129 (517)
T COG1657 78 P--L---------IAP----ASDPLLTEG-----------VK-NVLLLYPTSGDVERLLLLLDHYFK-RGFPAPVTSLRV 129 (517)
T ss_pred c--c---------ccc----ccccccccc-----------cc-ceeEEcCCcchHHHHHHHHHHHHh-hccCccchhhhh
Confidence 9 1 111 113333322 11 257889987543333333333222 123334556666
Q ss_pred HHHHHHHHhhhhcCCCccceeechHHHHHHHhhccc-cCCCc-HHHHHHHHHHhhhheeccCCceeeccCCCchhHHHHH
Q 043885 349 IALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWV-EDPNS-EAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFA 426 (765)
Q Consensus 349 ~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~-~~p~~-~~~~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTala 426 (765)
+ +.. +.+.-|..++...+.++|+.++++..... ...++ ..+++|..+..+..+...-|+-+-..+++|+|||+|+
T Consensus 130 ~--~~a-~l~~~e~Qn~dg~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~wD~~f~ 206 (517)
T COG1657 130 R--KEA-ELWKLERQNDDGSWRGIVNAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRGLAWLLGSQVWDGGFI 206 (517)
T ss_pred h--hhh-heeeeeecccccccccchhhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhcccccccccccccccccchhh
Confidence 6 222 33333455555667899998877755433 24444 7899999999998887777766666669999999999
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhcccccc
Q 043885 427 VHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYD 506 (765)
Q Consensus 427 i~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~ 506 (765)
.+++.++|+.+...+++.||+.||...|+... .+|... ++.++|||+|+..+.++||.|||+.+++++....
T Consensus 207 ~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~~--~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~----- 278 (517)
T COG1657 207 RRALLVAGLAETPIPAIAKALMFLLDKQVLKY--ADWAVK-RKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQ----- 278 (517)
T ss_pred hhhhhhcCccccchHhHHhhhhhhHHHHHHHh--hccccc-cccCCCccceeecccCCCCchhhhHHHHHHHhhc-----
Confidence 99999999987623899999999999999975 799888 9999999999999999999999999999998764
Q ss_pred ccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccc
Q 043885 507 LVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHR 586 (765)
Q Consensus 507 ~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r 586 (765)
+.+.+.++++|++.+||..|||+.|+..+...|++.+++.+.+ .|++++++|||+.++.+|+.+..-...++
T Consensus 279 ------~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl~~~~ 350 (517)
T COG1657 279 ------SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALAALNAYLEAYD 350 (517)
T ss_pred ------chhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHhhhhhcccccc
Confidence 2456777999999999999999999999999999999999887 89999999999999999988765322111
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcccccccc
Q 043885 587 RREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVS 666 (765)
Q Consensus 587 ~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s 666 (765)
...|++|++||++.|++||+|+|.|++|++|+|++++.+|...|.++.++..++++|.||.++|++||||++++.+
T Consensus 351 ----~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~ 426 (517)
T COG1657 351 ----GQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEA 426 (517)
T ss_pred ----CCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccc
Confidence 2459999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccccccCCccchH
Q 043885 667 CVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIF 746 (765)
Q Consensus 667 ~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~f 746 (765)
+.++.|.. -+.|..++|+||+.+|+.+..+ +++++++++++|.+.|.++|.|.+.+..|+|+.+|++.||.|+.+|
T Consensus 427 ~~~~~~~~--t~~sl~~~~~wal~~~~~a~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~~~~~ 502 (517)
T COG1657 427 ISDPVYTG--TESSLLVQTNWALIALLTALEP--NQEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYYLAYF 502 (517)
T ss_pred cccccccc--ccchhhcchhHHHHHHHHhccc--chhhhcccccccccCcCCCCccccceecccCCCCcceeeeeEEeec
Confidence 99999976 3578899999999999999887 3567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 043885 747 PIWALGAFYNR 757 (765)
Q Consensus 747 pl~ALg~y~~~ 757 (765)
|+.|||+|-..
T Consensus 503 p~~~lg~y~~~ 513 (517)
T COG1657 503 PIIALGRYGGQ 513 (517)
T ss_pred Cchhhcccccc
Confidence 99999999654
No 9
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=100.00 E-value=3.3e-46 Score=409.65 Aligned_cols=347 Identities=44% Similarity=0.801 Sum_probs=291.2
Q ss_pred HHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCC
Q 043885 393 KHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQ 472 (765)
Q Consensus 393 ~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~ 472 (765)
.++++.|.+- +.+||.+.-. .+++|+|+++++||.++|..+++.+.++||++||.++|...++ ++|...+++.+.
T Consensus 2 ~~~~~~L~~~--Q~~dG~W~~~--~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~-~~~~~~~~~~~~ 76 (348)
T cd02889 2 RRALDFLLSL--QAPDGHWPGE--YSQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNP-DDWKVKYRHLRK 76 (348)
T ss_pred chHHHHHHHh--ccCCCCcccc--CCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCC-CchhhcCCCCCC
Confidence 3556666554 4678855422 2899999999999999998667789999999999999976654 457777888999
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccc
Q 043885 473 EGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPV 552 (765)
Q Consensus 473 GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~ 552 (765)
|||+|+...+++|++|+|+.++++|+.+...++ .+..+..+.+.++++||+++|++||||..|+..+...|++. +.
T Consensus 77 Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~--~~ 152 (348)
T cd02889 77 GGWAFSTANQGYPDSDDTAEALKALLRLQKKPP--DGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLEL--IP 152 (348)
T ss_pred CcCcccCcCCCCCCCCChHHHHHHHHHhhccCc--ccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhc--Cc
Confidence 999999988889999999999999998865432 13456789999999999999999999998877666556543 33
Q ss_pred cccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 043885 553 ENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVD 632 (765)
Q Consensus 553 e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~a 632 (765)
+.+++...+++.+++|+.++.+|..++...+.++ +++.+.++|+++||.+.|++||+|++.|+.+++|.|++++.+|..
T Consensus 153 ~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~-~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~ 231 (348)
T cd02889 153 EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHR-REIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAA 231 (348)
T ss_pred hhhcCCccCCCCcchHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHH
Confidence 4456667788899999999999998876433332 357789999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 043885 633 SGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVL 712 (765)
Q Consensus 633 aG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L 712 (765)
+|... ..+.++++++||+++|++||||++.+.++..+.|.+ +..+++..||+||++|+.+|.. +...++++++||
T Consensus 232 ~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~--~~~~~~~~Ta~al~aL~~~g~~--~~~~v~~a~~wL 306 (348)
T cd02889 232 AGEDE-NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAG--GGRSTVVQTAWALLALMAAGEP--DSEAVKRGVKYL 306 (348)
T ss_pred cCCCc-CcHHHHHHHHHHHHccCCCCCcCCcccccccccccC--CCCCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 98763 578999999999999999999998765554444433 5678999999999999999875 345799999999
Q ss_pred HhcCcCCCCCCCCccccccCCccccccCCccchHHHHHHHHH
Q 043885 713 INSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 713 ~~~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
.++|++||+|.....+|++++.|+++|++|.++|||+|||+|
T Consensus 307 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd02889 307 LNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFPLWALGRY 348 (348)
T ss_pred HHhcCCCCCcCCceeeeeecceeeeccCccchHhHHHHhhcC
Confidence 999999999999999999999999999999999999999986
No 10
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=3.5e-39 Score=377.10 Aligned_cols=503 Identities=20% Similarity=0.199 Sum_probs=320.6
Q ss_pred HHHHHHHHHHhcCCCCCCccc--cCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcc
Q 043885 101 TLRRALRFYSTLQSEDGFWPG--DYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGEST 178 (765)
Q Consensus 101 al~~a~~~l~~~Q~~DG~W~~--~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~ 178 (765)
-+++.++||.++|++||+|.- +..|+++.|...++||+++| ...++++++++++||+.+ || -....
T Consensus 63 ~~~~~~~~l~~~Q~~DGgWg~~~~~~~~~~~Tv~~Y~aLrl~G---~~~~~~~m~rAr~~I~~~----GG-----~~~~~ 130 (635)
T TIGR01507 63 RMEKIRNYLLHEQREDGTWALYPGGPGDLSTTVEAYVALKYIG---MSRDEPPMQKALRFIQSQ----GG-----IESSR 130 (635)
T ss_pred HHHHHHHHHHHhccCCCCccCccCCCcchhHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHc----CC-----ccccc
Confidence 456789999999999999994 45789999999999999999 445688999999999996 88 44667
Q ss_pred hhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchh-----------HHHH-HHHhccccCCCCCCCC----
Q 043885 179 MLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSW-----------GKIW-LSVLGVYDWSGNNPIP---- 242 (765)
Q Consensus 179 m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w-----------~k~~-Lal~G~~~W~~~~~lP---- 242 (765)
+|+. +-|.++|+.|+++.|.|+ .+-|++ |.| .|.. +.|.=++.-.-+.++|
T Consensus 131 ~~tk----~~LAl~G~~~W~~~~~~P-~El~ll--------P~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~~~ 197 (635)
T TIGR01507 131 VFTR----MWLALVGEYPWRGVPMVP-PEIMLL--------PKRFPFNIYEFSSWARATVVPLSIVCSRKPVFPLPERAR 197 (635)
T ss_pred HHHH----HHHHHcCCcCcccCCCCC-HHHHhC--------CCcCCccHHHHHHHHHHHHHHHHHHhcCCCccCCCcccC
Confidence 8888 689999999999888777 344444 543 3321 1111122223333444
Q ss_pred -cchhccCCCCC---CCCCcccccc-cchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCC
Q 043885 243 -PETWLLPDFLP---THPGRMWCHT-RLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYR 317 (765)
Q Consensus 243 -pEl~llP~~~P---~~~~~~~~~~-R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~ 317 (765)
+||+.-|.--. +.+.. ..|. -..+-....++.+ +.+ ..||+.-.. ..++|...|.+.. +.|.
T Consensus 198 ~~eL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----l~~--~~lr~~A~~---~a~~~i~~~~e~~--g~~~ 264 (635)
T TIGR01507 198 VPELYETDVPKPRRRGAKGG-TGWGIFDALDRALHGYEK-----LSV--HPFRRAAEI---RALDWLLERQAGD--GSWG 264 (635)
T ss_pred hHhhcCCChHHhcccCCccC-CcHHHHHHHHHHHHHHHh-----cCC--cHHHHHHHH---HHHHHHHHHHcCC--Ccee
Confidence 45554443000 00000 0010 0000111112211 111 013332211 3346877776522 2222
Q ss_pred CCchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccce--eechHHH-HHHHhhc--cccCCCcHHH
Q 043885 318 QHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYI--CIAGVNK-VLNMLCR--WVEDPNSEAY 392 (765)
Q Consensus 318 p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y~--~i~~v~~-~l~ml~~--~~~~p~~~~~ 392 (765)
.-.+ ..++..+....+ ...|-+..++|+++.+.+++.. ++++.++ +..+|+. ++.+.++ .+..+++|.+
T Consensus 265 ~i~p--~~~~~l~~l~~~---g~~~~~~~~~~~l~~l~~~~~~-~~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l 338 (635)
T TIGR01507 265 GIQP--AMFNALIALKIL---GMTQHDAFIKLGWEGIDLYGVE-LDDSWMFQACVSPVWDTALAVLALREAGLPADHDAL 338 (635)
T ss_pred ecch--HHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHheEe-cCCceEecCCCCcHHHHHHHHHHHHHcCCCCCCHHH
Confidence 2111 112111111112 1123346899999999998754 3333443 3346664 3333332 3445678999
Q ss_pred HHHHHHHhhhheecc------------CCceeeccC--CCchhHHHHHHHHHHHcCCCC--cchHHHHHHHHHHHhhccc
Q 043885 393 KHHLARIKDYLWVAE------------DGMKMQAYN--GSQLWDTAFAVHAILSTNLVD--EYGSMLKKANNYIKTTQVR 456 (765)
Q Consensus 393 ~~~l~~l~~~l~~~~------------dG~~~q~~~--gs~~WDTalai~AL~~ag~~~--~~~~~l~kA~~~L~~~Q~~ 456 (765)
+|+.+.|.+..+... +|+-++..| -+.+|||+.++.||..++.++ ...+.++||++||+++|.+
T Consensus 339 ~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~ 418 (635)
T TIGR01507 339 VKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSS 418 (635)
T ss_pred HHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCC
Confidence 999999988765422 223333212 268999999999999987543 3467999999999999997
Q ss_pred cCCCCCCccccCCCC---CCCCCCCCCC--CCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccC
Q 043885 457 TKSFEDPSCWYRHEF---QEGWPFSSLD--NGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSS 531 (765)
Q Consensus 457 ~~~~Gd~~~~~~~~~---~GgW~fs~~~--~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~d 531 (765)
+ |+|..+.++.. -+--+|++.+ ...|++|||+.+|+||..+.. ...+++|++|++||+++|++|
T Consensus 419 d---Ggw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~d 487 (635)
T TIGR01507 419 N---GGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGY--------DDAWPVIERAVEYLKREQEPD 487 (635)
T ss_pred C---CCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCCC
Confidence 5 88865432110 0122344311 125899999999999987632 224789999999999999999
Q ss_pred CCc-cccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCC
Q 043885 532 GGV-ASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGW 610 (765)
Q Consensus 532 GGw-~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGs 610 (765)
||| +.|.. .+..+|+.++.+|...+... .++.|+||++||++.|++||+
T Consensus 488 G~W~g~wg~-----------------------~~~Y~T~~al~aL~~~g~~~-------~~~~i~rAv~wL~~~Q~~DGG 537 (635)
T TIGR01507 488 GSWFGRWGV-----------------------NYLYGTGAVLSALKAVGIDT-------REPYIQKALAWLESHQNPDGG 537 (635)
T ss_pred CCCccCCCC-----------------------ccccHHHHHHHHHHHcCCCc-------ccHHHHHHHHHHHHhcCCCCC
Confidence 999 44331 12457999999998875421 247899999999999999999
Q ss_pred CCCC-----------CCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcccccccccc--cc-ccccCC
Q 043885 611 WYGS-----------WGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCV--DR-VYTNLE 676 (765)
Q Consensus 611 W~g~-----------wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~--~~-~Y~~l~ 676 (765)
|... -|.+..+.|+++|.||.++|.. +.+.|+||++||+++|++||||++.+..-. .+ -|.
T Consensus 538 Wge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi--- 612 (635)
T TIGR01507 538 WGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL--- 612 (635)
T ss_pred CCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeee---
Confidence 9632 1456788999999999999976 468999999999999999999999743211 11 121
Q ss_pred CCCCcHHHHHHHHHHHHHh
Q 043885 677 GNKAHNVNTAWAMLALIEA 695 (765)
Q Consensus 677 g~~S~~~~TAwALlAL~~a 695 (765)
.-+.+.-.+.|+||...
T Consensus 613 --~Y~~Y~~~fpl~ALg~y 629 (635)
T TIGR01507 613 --GYHMYRHVFPLLALARY 629 (635)
T ss_pred --cccchhhHhHHHHHHHH
Confidence 12344566778887543
No 11
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.9e-39 Score=378.17 Aligned_cols=490 Identities=17% Similarity=0.176 Sum_probs=313.7
Q ss_pred HHHHHHHHHhcCCCCCCcccc--CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcch
Q 043885 102 LRRALRFYSTLQSEDGFWPGD--YAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTM 179 (765)
Q Consensus 102 l~~a~~~l~~~Q~~DG~W~~~--~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m 179 (765)
.++.++||.++|++||+|+-- -.|.||.|...++||+++|.......++++++++++|++| || -....+
T Consensus 149 ~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~----GG-----a~~~p~ 219 (759)
T PLN03012 149 RKEILRYIYCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDNACGRARDWILDH----GG-----ATYIPS 219 (759)
T ss_pred HHHHHHHHHHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHc----CC-----cccCch
Confidence 345899999999999999953 4569999999999999999542111256899999999996 88 557778
Q ss_pred hhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCC--------------CCCCCcch
Q 043885 180 LNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSG--------------NNPIPPET 245 (765)
Q Consensus 180 ~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~--------------~~~lPpEl 245 (765)
||. +-|.+||+.+++|.+.|+ .+-|++ |.|-.|... .+..|.+ +.++||.+
T Consensus 220 w~K----~wLA~lG~y~W~g~np~P-pElwLL--------P~~~P~hp~--~~~~~~R~vy~Pmsyly~~R~~~~~~~~i 284 (759)
T PLN03012 220 WGK----TWLSILGVFDWSGSNPMP-PEFWIL--------PSFFPIHPA--KMWCYCRLVYLPMSYLYGKRFVGPISPLI 284 (759)
T ss_pred HHH----HHHHHcCccccCCCCCCC-hhHHHc--------cCcCCccHH--HHHHHHHHHHHHHHHHhcCCccccCCchh
Confidence 988 689999999999988887 555665 655332211 2222332 33455422
Q ss_pred h-ccCCCCC--CCCCcccccccc------hhhhH----------HHHhccccccccCchhhhhhhhhccCCCCccchhhh
Q 043885 246 W-LLPDFLP--THPGRMWCHTRL------VLLPT----------SYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRA 306 (765)
Q Consensus 246 ~-llP~~~P--~~~~~~~~~~R~------v~~pm----------syl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~ 306 (765)
- |.++.++ .+.-++. -.|. .|-|. .+.+..++..+. |....||+.-.. ...+|...
T Consensus 285 ~~lr~ELy~~py~~i~w~-~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~~-~~~~~LR~~Al~---~a~~~I~~ 359 (759)
T PLN03012 285 LQLREEIYLQPYAEINWM-KARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFLACW-PFNKLLREKALG---LAMKHIHY 359 (759)
T ss_pred hhhHHHhCCCCccccChh-hhccccccccccCCchHHHhhhHHHHHHHHHHHhhcc-cccHHHHHHHHH---HHHHHHHh
Confidence 2 1122111 1111111 1111 23331 222223222221 111124432211 11123221
Q ss_pred hhhccccccCCCCchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccc--eeechHHHH-HHHhhc-
Q 043885 307 RFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQY--ICIAGVNKV-LNMLCR- 382 (765)
Q Consensus 307 R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y--~~i~~v~~~-l~ml~~- 382 (765)
+.... .|---+.+...+ .+|.... .-|-+...+++++.+.+++-..++ +.+ .|.++|+.. +.+.++
T Consensus 360 --ed~~t-~y~~i~pv~~~l-~ml~~~~-----~~p~~~~~k~hl~ri~d~lw~~~d-Gm~~q~~gSqvWDTa~~~qAl~ 429 (759)
T PLN03012 360 --EDENS-RYITIGCVEKAL-CMLACWV-----EDPNGDHFKKHLLRISDYLWIAED-GMKMQSFGSQLWDSGFALQALL 429 (759)
T ss_pred --cCCCC-CEeeHHHHHHHH-HHHHHhC-----CCCCCHHHHHHHHHhhhcEEEeCC-ceEEcCCCCcHHHHHHHHHHHH
Confidence 11111 221112222221 1111111 124456899999999988632222 322 356778873 333332
Q ss_pred -cc-cCCCcHHHHHHHHHHhhhheecc--------------CCceeeccCC--CchhHHHHHHHHH---HHcCC----CC
Q 043885 383 -WV-EDPNSEAYKHHLARIKDYLWVAE--------------DGMKMQAYNG--SQLWDTAFAVHAI---LSTNL----VD 437 (765)
Q Consensus 383 -~~-~~p~~~~~~~~l~~l~~~l~~~~--------------dG~~~q~~~g--s~~WDTalai~AL---~~ag~----~~ 437 (765)
.+ .+...+.++|+.+.|.+-..... +|+.++..|. +.+.|||-++.|+ ..... ..
T Consensus 430 ~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~ 509 (759)
T PLN03012 430 ASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPK 509 (759)
T ss_pred HcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhccccccccc
Confidence 22 23356689999988876555311 2233332221 3467999998763 22221 11
Q ss_pred cchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCC--------CCCCCCCCCChhhhHHHHHHHHHhccccccccC
Q 043885 438 EYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWP--------FSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVG 509 (765)
Q Consensus 438 ~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~--------fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g 509 (765)
-..+.+.+|++||++.|.++ |+|..+.+...+ .|- |++.---+|.+|||+++|+||..+++..++...
T Consensus 510 ~~~~~l~~av~wlL~mQn~d---GGwaafe~~~~~-~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~ 585 (759)
T PLN03012 510 MDPEQLHDAVNILLSLQSKN---GGMTAWEPAGAP-EWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRT 585 (759)
T ss_pred ccHHHHHHHHHHHHhccCCC---CCEeeecCCcch-HHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccch
Confidence 12578999999999999986 999887654332 343 555433478899999999999988765432222
Q ss_pred CCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhH
Q 043885 510 EAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRRE 589 (765)
Q Consensus 510 ~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~ 589 (765)
+.+ .++|++|++||++.|++||||. ++.+++|.| +|+.||+||..+++.+++
T Consensus 586 ~~i-~~~i~rAv~~L~~~Q~~DGsW~--------------------G~Wgv~y~Y--gT~~aL~aL~a~g~~~~~----- 637 (759)
T PLN03012 586 EEI-NAFIKKAAEYIENIQMLDGSWY--------------------GNWGICFTY--GTWFALAGLAAAGKTFND----- 637 (759)
T ss_pred hhh-HHHHHHHHHHHHHhcCCCCCCc--------------------ccccccCCc--HHHHHHHHHHHhCccCCC-----
Confidence 223 6899999999999999999995 344555555 899999999999876654
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCch-------------hHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccC
Q 043885 590 IEEFIAKGANFIESIQRPDGWWYGSWGVCFT-------------YGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLD 656 (765)
Q Consensus 590 i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~-------------YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~ 656 (765)
.++|+||++||++.|++||||+++|++|++ |.|++||+||.++|..+.+++.|+|||+||+++|.+
T Consensus 638 -~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~ 716 (759)
T PLN03012 638 -CEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE 716 (759)
T ss_pred -cHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC
Confidence 378999999999999999999999988765 899999999999998865668999999999999999
Q ss_pred CCccccc
Q 043885 657 SGGWGES 663 (765)
Q Consensus 657 DGGWGes 663 (765)
||+|-+.
T Consensus 717 dG~W~q~ 723 (759)
T PLN03012 717 NGDFPQQ 723 (759)
T ss_pred CCCCCCc
Confidence 9999664
No 12
>PLN02993 lupeol synthase
Probab=100.00 E-value=1.2e-37 Score=363.93 Aligned_cols=486 Identities=17% Similarity=0.180 Sum_probs=311.4
Q ss_pred HHHHHHHHHHhcCCCCCCcccc--CCCCCcchHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHhccCCCCccccccCC
Q 043885 101 TLRRALRFYSTLQSEDGFWPGD--YAGPLFLLPCLVIGLYITGDLNTILQ---VEYRREMLRYLYNHQNEDGGWGLHIEG 175 (765)
Q Consensus 101 al~~a~~~l~~~Q~~DG~W~~~--~~g~~~~~~~~vial~~~g~~~~~~~---~~~~~~~~ryl~~~Qn~DGGWgl~~~~ 175 (765)
-.++.++||.++|++||+|+-- -.|.||.|...++||+++|. ..+ ++++++++++|++| || -.
T Consensus 148 ~~~ei~ryl~~~Q~~DGGWgl~~eg~s~~~~Tv~~Y~aLRllG~---~~d~~~~p~m~rAR~~Il~~----GG-----a~ 215 (763)
T PLN02993 148 HRKEMLRHIYCHQNEDGGWGLHIESKSVMFCTVLNYICLRMLGE---GPNGGRENACKRARQWILDH----GG-----VT 215 (763)
T ss_pred HHHHHHHHHHHhccCCCCcccccCCCccchHHHHHHHHHHHcCC---CCCCCCCHHHHHHHHHHHHc----CC-----cc
Confidence 3445899999999999999954 45689999999999999994 445 67899999999996 88 55
Q ss_pred CcchhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCC-------------
Q 043885 176 ESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIP------------- 242 (765)
Q Consensus 176 ~s~m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lP------------- 242 (765)
...+||. +-|.+||+.+++|.+.|+ .+-|++ |.|..|... .+..|.+...||
T Consensus 216 ~~~~wtK----~wLAllG~y~W~g~~p~P-pElwLL--------P~~~P~hp~--~~~~~~R~v~vPmsyl~~~r~~~~~ 280 (763)
T PLN02993 216 YIPSWGK----FWLSILGIYDWSGTNPMP-PEIWLL--------PSFLPIHLG--KTLCYTRMVYMPMSYLYGKRFVGPI 280 (763)
T ss_pred cCchHHH----HHHHHcCCcccCCCCCCC-hhHHHc--------cCcCCccHH--HhHHhhhhhHHhHHHHhcCCcccCC
Confidence 7789998 689999999999988887 555555 776554332 444455544333
Q ss_pred -cchh-ccCCCCC--CCCCccc-----ccccchhhhHHHH------hccccccccC---chhhhhhhhhccCCCCccchh
Q 043885 243 -PETW-LLPDFLP--THPGRMW-----CHTRLVLLPTSYL------YGKRFVGKIN---SLVLCLREELYTRPYEKIDWN 304 (765)
Q Consensus 243 -pEl~-llP~~~P--~~~~~~~-----~~~R~v~~pmsyl------~~~r~~~~~~---p~~~~lr~EL~~~p~~~i~w~ 304 (765)
|.+- |.++.++ .+.-++. |.-...|-|-+.+ ...++..|+. |+-..||+.- +++.
T Consensus 281 ~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l~~~p~~~~lR~~A-------l~~a 353 (763)
T PLN02993 281 TPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKA-------LQVA 353 (763)
T ss_pred CchhhhhhHHhccCCchhcChHhhcCCccccCCCCCchHHHHHHHHHHHHHHhhcccCCcchHHHHHHH-------HHHH
Confidence 3221 1122111 1111111 1111122231110 0011111111 1101233321 1111
Q ss_pred hhhhhccccc---cCCCCchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccc--eeechHHHH-HH
Q 043885 305 RARFLCAQED---LYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQY--ICIAGVNKV-LN 378 (765)
Q Consensus 305 ~~R~~~a~~d---~~~p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y--~~i~~v~~~-l~ 378 (765)
..|.. .|| .|.|-+.+..++ .+|....+ -|-+...+++++.+.+++-..++ +.+ .|.+||+.. |.
T Consensus 354 ~~~i~--~ed~~t~y~~i~~vn~~l-~ml~~~~~-----~p~~~~~~~~l~ri~d~lw~~ed-gm~~q~~gSqvWDTa~a 424 (763)
T PLN02993 354 MKHIH--YEDENSHYITIGCVEKVL-CMLACWIE-----NPNGDHFKKHLARIPDYMWVAED-GMKMQSFGSQLWDTGFA 424 (763)
T ss_pred HHHHH--hcCCCCCcccHHHHHHHH-HHHHHhCC-----CCCCHHHHHHHHHhhhcEEEeCC-ceEEcCCCCchHHHHHH
Confidence 12221 233 455533332222 12212211 24446899999999998632222 232 357788873 33
Q ss_pred Hhhc--cc-cCCCcHHHHHHHHHHhhhheec--------------cCCceeeccCC--CchhHHHHHHHHH---HHcCCC
Q 043885 379 MLCR--WV-EDPNSEAYKHHLARIKDYLWVA--------------EDGMKMQAYNG--SQLWDTAFAVHAI---LSTNLV 436 (765)
Q Consensus 379 ml~~--~~-~~p~~~~~~~~l~~l~~~l~~~--------------~dG~~~q~~~g--s~~WDTalai~AL---~~ag~~ 436 (765)
+.++ .+ .++.+|.++|+.+.|.+-.... .+|+.++..|. ..+.|||-++.|+ ......
T Consensus 425 ~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~ 504 (763)
T PLN02993 425 IQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPAD 504 (763)
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccc
Confidence 3333 22 2367899999999887765531 12333332222 2467999999853 333211
Q ss_pred ---Cc-chHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCC----CCCC----CCCCCCChhhhHHHHHHHHHhcccc
Q 043885 437 ---DE-YGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGW----PFSS----LDNGWIATDTTAEGLNVSVLLSEMS 504 (765)
Q Consensus 437 ---~~-~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW----~fs~----~~~~~pd~D~TA~aL~aL~~l~~~~ 504 (765)
+. ..+.|.+|++||+.+|.++ |+|..+.+... ..| +|++ .---+|.+|||+.+|+||..+.+..
T Consensus 505 ~~~~~~~~~~l~~av~wlL~mQn~d---GG~aafe~~~~-~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~ 580 (763)
T PLN02993 505 VVGQKIDPEQLYDSVNLLLSLQSEN---GGVTAWEPVRA-YKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLY 580 (763)
T ss_pred cccccchHHHHHHHHHHHHhhccCC---CCEEeeeCCCc-hhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccC
Confidence 11 2479999999999999986 99988765432 123 2222 1112688999999999999886432
Q ss_pred ccccCCCCChHHHHHHHHHHHhccccCCCcc-ccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCC
Q 043885 505 YDLVGEAIPLNRLFEAVNVVLSLQNSSGGVA-SYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYP 583 (765)
Q Consensus 505 ~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~-~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p 583 (765)
++...+. .++++++|++||++.|++||||. .| .+.+ ..+|+.+|.||..+++.++
T Consensus 581 p~~r~~e-i~~~i~rAv~yL~~~Q~~DGSW~G~W---------------------gv~y--~YgT~~aL~aL~a~G~~~~ 636 (763)
T PLN02993 581 PDHRTKE-IIKSIEKAVQFIESKQTPDGSWYGNW---------------------GICF--IYATWFALGGLAAAGKTYN 636 (763)
T ss_pred cchhhhh-HHHHHHHHHHHHHHhcCCCCCccccc---------------------cccc--CcHHHHHHHHHHHcCCCCC
Confidence 2211222 26799999999999999999994 22 2223 3489999999999887543
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-------------hhHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 043885 584 KHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCF-------------TYGTWFGIKGLVDSGRKYENSRSIRKACDFL 650 (765)
Q Consensus 584 ~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~-------------~YgT~~al~aL~aaG~~~~~~~~i~rav~~L 650 (765)
. .++|+||++||++.|++||+|+++|..|. .|+|++|++||.++|....+.+.|+||++||
T Consensus 637 ~------~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L 710 (763)
T PLN02993 637 D------CLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLI 710 (763)
T ss_pred C------cHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 2 36899999999999999999998886653 3999999999999998755668999999999
Q ss_pred HhcccCCCccccc
Q 043885 651 LSKQLDSGGWGES 663 (765)
Q Consensus 651 ls~Q~~DGGWGes 663 (765)
+++|++||+|-+.
T Consensus 711 ~~~Q~~~G~W~q~ 723 (763)
T PLN02993 711 ITSQLENGDFPQQ 723 (763)
T ss_pred HhccCCCCCCCCc
Confidence 9999999999664
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=3e-36 Score=352.80 Aligned_cols=481 Identities=17% Similarity=0.148 Sum_probs=305.9
Q ss_pred HHHHHHHHHhcCCCCCCccc--cCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcch
Q 043885 102 LRRALRFYSTLQSEDGFWPG--DYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTM 179 (765)
Q Consensus 102 l~~a~~~l~~~Q~~DG~W~~--~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m 179 (765)
.++.++||.++|++||+|+- +-.|++|.|...++||+++| ...+++++++++++|++| + || -....+
T Consensus 44 ~~~~~~yl~~~Q~~dGgWgl~~~~~~~~~~T~~~Y~aLrl~G---~~~~~~~~~rAr~~i~~~--~-GG-----~~~~~~ 112 (634)
T TIGR03463 44 RAGIIRHFENSQLADGAWGLHPEAPGQVFTTVLNYVALRLLG---VGKEDAGLARARQWLHAQ--P-GG-----VLGSPT 112 (634)
T ss_pred HHHHHHHHHHhccCCCCccCCCCCCcchHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHhC--C-CC-----cccCch
Confidence 44699999999999999994 45689999999999999999 345688999999999983 1 77 446677
Q ss_pred hhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCC--------------CCCCcch
Q 043885 180 LNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGN--------------NPIPPET 245 (765)
Q Consensus 180 ~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~--------------~~lPpEl 245 (765)
||. +-|.++|+.++++.|.|+ .+-|++ |.|..| ++..++.|.+. .++||.+
T Consensus 113 ~~k----~~La~~g~~~W~~~~~~P-~El~lL--------P~~~P~--~~~~~~~~~R~v~~p~~~l~~~r~~~~~~~~~ 177 (634)
T TIGR03463 113 WGK----FWLALLGLYGRGGLQPVP-PELWLL--------PESLPF--HPSRFYCHTRMVYLPMSWLYGRRARAPLTPLR 177 (634)
T ss_pred HHH----HHHHHcCcCCcccCCCCC-HHHHHc--------cccCCc--CHHHHHHHhHHHHHhHHHHhcCCcccCCCcch
Confidence 988 589999999999888877 444444 665432 22233334332 2333322
Q ss_pred h-ccCCCCCCCCC--ccccccc------chhhhH----------HHHhccccccccCchhhhhhhhhccCCCCccchhhh
Q 043885 246 W-LLPDFLPTHPG--RMWCHTR------LVLLPT----------SYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRA 306 (765)
Q Consensus 246 ~-llP~~~P~~~~--~~~~~~R------~v~~pm----------syl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~ 306 (765)
. |.++.++-.+. ++.. .| ..|-|- ...+.+. +.. .||+--.. ..++|...
T Consensus 178 ~~l~~EL~~~~~~~~~~~~-~~~~~~~~d~~~p~~~~~~~~~~~l~~~~~~---~~~----~lr~~A~~---~~~~~i~~ 246 (634)
T TIGR03463 178 AALRQELYDGGYGQVDFVA-ARERVAPTDVFTPRTFWLRAANQVMYGYERL---AGK----QLRARALD---FCLEQIRA 246 (634)
T ss_pred hhhhHHhccCCcccccccc-ccCccccccccCCcHHHHHHHHHHHHHhhcc---CCH----HHHHHHHH---HHHHHHHH
Confidence 1 11221111000 1100 01 011111 1111111 011 13332110 12345555
Q ss_pred hhhccccccCCCCchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccc--eeechHHH-HHHHhhc-
Q 043885 307 RFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQY--ICIAGVNK-VLNMLCR- 382 (765)
Q Consensus 307 R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y--~~i~~v~~-~l~ml~~- 382 (765)
|.+ .+| |.--.++...+ .+|... ..-|-++..+|+++.+.+.+-..++++.+ .|.+|++. ++.++++
T Consensus 247 ~~~--~~~-~~~i~p~~~~~-~~l~~~-----g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~~s~~WDTala~~AL~ 317 (634)
T TIGR03463 247 EDE--ATH-YICISPVNGVL-NMLAWF-----AVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNGYNSSEWDTAFAVQALA 317 (634)
T ss_pred Hhc--CCC-eEehHHHHHHH-HHHHHh-----CCCCCCHHHHHHHHHHHhhEEEcCCCCEEEeeCCCCchhHHHHHHHHH
Confidence 543 233 32222222222 111111 11123368999999999987433332333 35677765 4444444
Q ss_pred -ccc-CC-CcHHHHHHHHHHhhhheec------------c-CCceeeccCC--CchhHHHHHHHHHHH---cCCCC---c
Q 043885 383 -WVE-DP-NSEAYKHHLARIKDYLWVA------------E-DGMKMQAYNG--SQLWDTAFAVHAILS---TNLVD---E 438 (765)
Q Consensus 383 -~~~-~p-~~~~~~~~l~~l~~~l~~~------------~-dG~~~q~~~g--s~~WDTalai~AL~~---ag~~~---~ 438 (765)
.+. ++ ..+.++|+++.|.+-.... + +|+..+..|. +.+.|||.++.||.. .+... .
T Consensus 318 e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~ 397 (634)
T TIGR03463 318 ATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERV 397 (634)
T ss_pred HcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccc
Confidence 232 22 3367788888777654311 2 2344443222 356899999999876 33221 1
Q ss_pred chHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCC--------CCCCCCCCCCChhhhHHHHHHHHHhccccccccCC
Q 043885 439 YGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGW--------PFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGE 510 (765)
Q Consensus 439 ~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW--------~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~ 510 (765)
..+++.+|++||+++|..+ |+|..+.++. .|.| .|++....+|.+||||.+|.||..+.+..++.. .
T Consensus 398 ~~~~l~~av~~Ll~~Qn~d---GGw~~y~~~~-~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~-~ 472 (634)
T TIGR03463 398 PQARLQDAVEFILSRQNED---GGFGTYERQR-GPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVP-D 472 (634)
T ss_pred cHHHHHHHHHHHHHhcCCC---CCEeccCCCC-cHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchh-h
Confidence 2579999999999999986 9998765544 4566 344444567899999999999988764221100 0
Q ss_pred CCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHH
Q 043885 511 AIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREI 590 (765)
Q Consensus 511 ~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i 590 (765)
....+++++|++||++.|++||||...- + +. +...|+.+++||..++....
T Consensus 473 ~~i~~ai~rav~~L~~~Q~~dGsW~g~W-----------------g---~~--~~Y~T~~al~aL~~~G~~~~------- 523 (634)
T TIGR03463 473 GRITRAISRGVRFLRSRQREDGSFPGSW-----------------G---VC--FTYGTFHGVMGLRAAGASPD------- 523 (634)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCccccC-----------------C---CC--CcHHHHHHHHHHHHcCCCcC-------
Confidence 1225689999999999999999995321 0 01 22369999999998765322
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCC-----------chhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCc
Q 043885 591 EEFIAKGANFIESIQRPDGWWYGSWGVC-----------FTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659 (765)
Q Consensus 591 ~~~I~rAv~~L~~~Q~~DGsW~g~wg~~-----------~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGG 659 (765)
++.|+||++||++.|++||+|++.|+.| .+|.|++||.||.++|.. .++.++||++||+++|++|||
T Consensus 524 ~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~--~~~~i~rgi~~L~~~Q~~dG~ 601 (634)
T TIGR03463 524 DMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEG--GHDAVQRGVAWLRSRQQEDGR 601 (634)
T ss_pred cHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCc--CCHHHHHHHHHHHHhCCCCCC
Confidence 3789999999999999999998887654 468999999999999975 578999999999999999999
Q ss_pred ccccc
Q 043885 660 WGESY 664 (765)
Q Consensus 660 WGes~ 664 (765)
|++..
T Consensus 602 W~~~~ 606 (634)
T TIGR03463 602 WPREP 606 (634)
T ss_pred CCCCc
Confidence 98753
No 14
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=1.2e-33 Score=330.38 Aligned_cols=476 Identities=18% Similarity=0.184 Sum_probs=303.4
Q ss_pred HHHHHHHHHHhcCCCCCCccc--cCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcc
Q 043885 101 TLRRALRFYSTLQSEDGFWPG--DYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGEST 178 (765)
Q Consensus 101 al~~a~~~l~~~Q~~DG~W~~--~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~ 178 (765)
-.++.++||.++|++||+|+- +-.|+++.|...++||+++| ...++++++++++||+++ || -....
T Consensus 47 ~~~~~~~~l~~~Q~~DGgW~~~~~~~~~~~~Tv~aY~aLrl~G---~~~~~~~m~~Ar~~i~~~----GG-----~~~~~ 114 (621)
T TIGR01787 47 YREKIVRYLRHHQNEDGGWGLHIGGKSTVFGTVLAYVALKILG---MSPDDPAMVRARNFILKQ----GG-----AVASP 114 (621)
T ss_pred HHHHHHHHHHHhcCCCCCeeCCcCCCcchHHHHHHHHHHHHcC---CCCCcHHHHHHHHHHHHc----CC-----cccCc
Confidence 356799999999999999994 44689999999999999999 445688999999999996 88 45677
Q ss_pred hhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHH------------HHHHhccccCCCCCCCC----
Q 043885 179 MLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKI------------WLSVLGVYDWSGNNPIP---- 242 (765)
Q Consensus 179 m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~------------~Lal~G~~~W~~~~~lP---- 242 (765)
+|+. +-|.++|+.|+++.|.|+ .+-|++ |.|-.| .|.| .|.+.....+|
T Consensus 115 ~~~k----~~La~~G~~~W~~~~~~P-~El~ll--------P~~~p~~~~~~w~~~~~v~l~~--~~~~~~~~~~~~~~~ 179 (621)
T TIGR01787 115 VFTK----FWLALLGVYPWEGVPPLP-PEIMLL--------PKWLPIHPSKSWCRCRMVYLPM--SYCYGERLSAPIDPR 179 (621)
T ss_pred hHHH----HHHHHcCccccccCCCCC-HhHHhc--------CcccCcCcchhhhhhhhHHHHH--HHHcCccccCCCCcc
Confidence 8888 689999999999888877 444444 554332 2222 22333222333
Q ss_pred cchhccCCCCCCCCCcccccccchhhhHHHHh------ccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccC
Q 043885 243 PETWLLPDFLPTHPGRMWCHTRLVLLPTSYLY------GKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLY 316 (765)
Q Consensus 243 pEl~llP~~~P~~~~~~~~~~R~v~~pmsyl~------~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~ 316 (765)
.||+.-|+-+. ..+-.|--...|.|.+.+- .+++..|+. ...+++ ..++|...|.. .+|.+
T Consensus 180 ~el~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~-------~a~~~~~~~~~--~~g~~ 246 (621)
T TIGR01787 180 EELYVEDDSIR--AQRNNVAKEDLYTPHSWLLRALYGLLNLFYHPFL--RKALRK-------RALQWLYEHIA--ADGSI 246 (621)
T ss_pred hhhcCCCcchh--hccCCCCcccccccHHHHHHHHHHHHhhcccccc--cHHHHH-------HHHHHHHHHhc--cCCCc
Confidence 23433330000 0000000000111222221 111111110 001111 23467766654 35555
Q ss_pred CCCchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccc--eeechHHH-HHHHhhc--cc---cCCC
Q 043885 317 RQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQY--ICIAGVNK-VLNMLCR--WV---EDPN 388 (765)
Q Consensus 317 ~p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y--~~i~~v~~-~l~ml~~--~~---~~p~ 388 (765)
.|-.+...+ +.... ...|-++..+++++.+.+.+-..++ +.+ .|..+|+. ++.+.++ .+ .+..
T Consensus 247 ~~i~~~~~~----~al~~----~g~~d~p~~~~~l~~l~~~~~~~~d-g~~~q~~~s~vWDTalai~AL~~ag~~~~~~~ 317 (621)
T TIGR01787 247 GPISKAMAM----LALWF----LDGPNSPAFQKHLQRIDDYLWLQLD-GMKMQGTGSQVWDTAFAIQALRESGDHRLPEF 317 (621)
T ss_pred hhHhHHHHH----HHHHH----cCCCCCHHHHHHHHHHhhcEEEeCC-ccEEecCCCcHHHHHHHHHHHHHcCCCCcccc
Confidence 443322111 11111 2334336899999999888533333 333 35667776 3333333 23 2456
Q ss_pred cHHHHHHHHHHhhhheecc--------------CCceeeccC-C-CchhHHHHHHHHHHHcCC--CCcchHHHHHHHHHH
Q 043885 389 SEAYKHHLARIKDYLWVAE--------------DGMKMQAYN-G-SQLWDTAFAVHAILSTNL--VDEYGSMLKKANNYI 450 (765)
Q Consensus 389 ~~~~~~~l~~l~~~l~~~~--------------dG~~~q~~~-g-s~~WDTalai~AL~~ag~--~~~~~~~l~kA~~~L 450 (765)
+|.+++++++|.+-..... .|+.++..| + +++.||+.+++++.-... .+...+.+++|++||
T Consensus 318 ~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~L 397 (621)
T TIGR01787 318 HPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWI 397 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHH
Confidence 7899999998877655331 223233222 2 378899999988654432 122368999999999
Q ss_pred HhhccccCCCCCCccccCCCCCCCC-----C---CCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHH
Q 043885 451 KTTQVRTKSFEDPSCWYRHEFQEGW-----P---FSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVN 522 (765)
Q Consensus 451 ~~~Q~~~~~~Gd~~~~~~~~~~GgW-----~---fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~ 522 (765)
++.|..+ |+|..+.+... +.| + |++.-.-+|.+|||+.+|+||..+... .....+++++|++
T Consensus 398 l~~Qn~d---GGw~ay~~~~~-~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r------~~~~~~~i~rAl~ 467 (621)
T TIGR01787 398 LGMQSSN---GGFAAYDPDNT-GEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR------ADEIRNVLERALE 467 (621)
T ss_pred HHHcCCC---CCEeeeccccc-hHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc------cHhHHHHHHHHHH
Confidence 9999976 88875432111 111 3 444322467889999999999876421 1124579999999
Q ss_pred HHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHH
Q 043885 523 VVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIE 602 (765)
Q Consensus 523 ~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~ 602 (765)
||++.|++||+|.. . ++ + .+...|+.++.+|..++..+.. .+.|+||++||+
T Consensus 468 ~L~~~Q~~DGsw~g--~---------------wg---~--~y~YgT~~al~aL~~~G~~~~~------~~~i~rA~~~L~ 519 (621)
T TIGR01787 468 YLRREQRADGSWFG--R---------------WG---V--NYTYGTGFVLSALAAAGRTYRN------CPEVQKACDWLL 519 (621)
T ss_pred HHHHhcCCCCCCcc--c---------------CC---C--CCchhHHHHHHHHHHhCCcccC------CHHHHHHHHHHH
Confidence 99999999999941 0 11 1 1334699999999988753221 278999999999
Q ss_pred HhcCCCCCCCCCCC-----------CCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccc
Q 043885 603 SIQRPDGWWYGSWG-----------VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYV 665 (765)
Q Consensus 603 ~~Q~~DGsW~g~wg-----------~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~ 665 (765)
+.|++||+|...+. .+.+..|+++|.||.++|.. ..++|+||++||+++|++||||++.+.
T Consensus 520 ~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~--~~~ai~rgv~~L~~~Q~~dG~w~~~~~ 591 (621)
T TIGR01787 520 SRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEA--DSEAIERGVKYLLETQRPDGDWPQEYI 591 (621)
T ss_pred hhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 99999999976543 24567899999999999875 467899999999999999999988654
No 15
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=5.9e-32 Score=318.73 Aligned_cols=477 Identities=19% Similarity=0.221 Sum_probs=299.0
Q ss_pred HHHHHHHHHHhcCCCCCCccc--cCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcc
Q 043885 101 TLRRALRFYSTLQSEDGFWPG--DYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGEST 178 (765)
Q Consensus 101 al~~a~~~l~~~Q~~DG~W~~--~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~ 178 (765)
-+++.++||.++|++||+|+. +-.|+++.|...++||+++| ...++++++++++||+++ || -....
T Consensus 47 ~~~~~~~~l~~~q~~dGgw~~~~~~~~~~~~T~~~Y~aLrl~G---~~~~~~~m~~Ar~~i~~~----GG-----~~~~~ 114 (634)
T cd02892 47 HRKEIARYLRNHQNPDGGWGLHHEGPSTMFGTVLNYVALRLLG---VSPDDPHMVKARNWILSH----GG-----AARIP 114 (634)
T ss_pred HHHHHHHHHHHhccCCCCccCCCCCCcchHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHc----CC-----ccccc
Confidence 356799999999999999994 45788999999999999999 445678999999999996 87 34566
Q ss_pred hhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCC--------------C--
Q 043885 179 MLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPI--------------P-- 242 (765)
Q Consensus 179 m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~l--------------P-- 242 (765)
+||. +-|.++|+.|+++.+.|+ .+-|++ |.|..| ++..++.|.+...| |
T Consensus 115 ~~~k----~~La~~G~~~W~~~~~~P-~El~ll--------P~~~p~--~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~ 179 (634)
T cd02892 115 VWGK----IWLALLGVYPWEGVPPLP-PELWLL--------PSWLPF--HPYKFWCWARTVYVPMSYLYGKRPVAPITPL 179 (634)
T ss_pred HHHH----HHHHHcCccccccCCCCC-HhHHhc--------CCcCCc--cHHHHHHHHHHHHHhHHHHhcCCcccCCCCc
Confidence 7887 689999999999888877 444554 554321 11122223332211 2
Q ss_pred -----cchhccCCCCCCCCCcccc-----------cccchhhh---HHHHhccccccccCchhhhhhhhhccCCCCccch
Q 043885 243 -----PETWLLPDFLPTHPGRMWC-----------HTRLVLLP---TSYLYGKRFVGKINSLVLCLREELYTRPYEKIDW 303 (765)
Q Consensus 243 -----pEl~llP~~~P~~~~~~~~-----------~~R~v~~p---msyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w 303 (765)
.||+.-|. +.-++.+ |.+ ++.- +...+.+ + +. ..||+.-.. ..++|
T Consensus 180 ~~~~~~el~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~--~~----~~lr~~a~~---~~~~~ 244 (634)
T cd02892 180 VLSLRDELYVEPY----EKINWYKHRNDLYDYRPPWQR-LFDALDRLLHWYEP-L--PP----KPLRRKALR---KAYEW 244 (634)
T ss_pred cccchHHhCCCCc----ccccccccccccccCCCChHH-HHHHHHHHHHHHHh-c--Cc----HHHHHHHHH---HHHHH
Confidence 23333222 1111111 111 0000 1111111 0 11 123332221 33467
Q ss_pred hhhhhhccccccCCCCchhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccce--eechHHH-HHHHh
Q 043885 304 NRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYI--CIAGVNK-VLNML 380 (765)
Q Consensus 304 ~~~R~~~a~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y~--~i~~v~~-~l~ml 380 (765)
...|.+ +|.+.-.-.. ...+..+....+ ..|-+...+++++.+.+++-..++++.++ |..+|+. +|.+.
T Consensus 245 i~~~q~---~~g~~~~~~~-~~~l~~lal~~~----g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~ 316 (634)
T cd02892 245 ILYRDE---NTGYLGIIPP-PKANNMLALWVL----GYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQ 316 (634)
T ss_pred HHHHhc---CCCceeeeeh-HHHHHHHHHHHc----CCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHH
Confidence 766654 2322211111 111222222222 22444689999999999874433444332 3455665 34333
Q ss_pred hc--cccC-CCcHHHHHHHHHHhhhheec------------cCC-ceeeccCC--CchhHHHHHHHHHHHcCCCC-----
Q 043885 381 CR--WVED-PNSEAYKHHLARIKDYLWVA------------EDG-MKMQAYNG--SQLWDTAFAVHAILSTNLVD----- 437 (765)
Q Consensus 381 ~~--~~~~-p~~~~~~~~l~~l~~~l~~~------------~dG-~~~q~~~g--s~~WDTalai~AL~~ag~~~----- 437 (765)
++ .+.. ..++.++++++.|.+-.... +.| +.++..+. +.+.|||+++.||+..+...
T Consensus 317 AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~ 396 (634)
T cd02892 317 ALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEK 396 (634)
T ss_pred HHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchh
Confidence 33 2322 56778888888887655411 123 33322212 35779999999999886432
Q ss_pred cchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCC-----CCCCC---CCCCCChhhhHHHHHHHHHhccccccccC
Q 043885 438 EYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGW-----PFSSL---DNGWIATDTTAEGLNVSVLLSEMSYDLVG 509 (765)
Q Consensus 438 ~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW-----~fs~~---~~~~pd~D~TA~aL~aL~~l~~~~~~~~g 509 (765)
...+.+++|++||+++|..+ |+|..+.+.. .+.| +|+.. -..+|.+|||+.+|+||..+....+..
T Consensus 397 ~~~~~i~~Av~wLl~~Qn~d---Ggf~~y~~~~-~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~-- 470 (634)
T cd02892 397 VSRERLYDAVDWLLGMQNSN---GGFAAFEPDN-TYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGH-- 470 (634)
T ss_pred hHHHHHHHHHHHHHhccCCC---CCEeeecCCC-chhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcch--
Confidence 23578999999999999875 8886543221 1221 22211 112688999999999998875321100
Q ss_pred CCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhH
Q 043885 510 EAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRRE 589 (765)
Q Consensus 510 ~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~ 589 (765)
.....+++++|++||++.|++||||.. . | + ..+...|+.++.||...+..+.
T Consensus 471 r~~i~~~i~rAv~~L~~~Q~~DGsW~g--~-----w----------g-----~~~~Y~T~~al~AL~~~G~~~~------ 522 (634)
T cd02892 471 RREIDPAIRRAVKYLLREQEPDGSWYG--R-----W----------G-----VCYIYGTWFALEALAAAGEDYE------ 522 (634)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCccc--c-----C----------C-----CccHHHHHHHHHHHHHhCCccc------
Confidence 001236899999999999999999931 1 1 0 0123469999999998765311
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC-----------CCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCC
Q 043885 590 IEEFIAKGANFIESIQRPDGWWYGSW-----------GVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSG 658 (765)
Q Consensus 590 i~~~I~rAv~~L~~~Q~~DGsW~g~w-----------g~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DG 658 (765)
.++.+++|++||++.|++||+|.... +.+.++.|++++.+|..+|.. +.+.++|+++||+++|++||
T Consensus 523 ~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G 600 (634)
T cd02892 523 NSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDG 600 (634)
T ss_pred CcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCC
Confidence 13689999999999999999996432 234578899999999999875 57899999999999999999
Q ss_pred ccccc
Q 043885 659 GWGES 663 (765)
Q Consensus 659 GWGes 663 (765)
||.+.
T Consensus 601 ~w~~~ 605 (634)
T cd02892 601 DWPQE 605 (634)
T ss_pred CCCCc
Confidence 99875
No 16
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.96 E-value=7.1e-27 Score=246.35 Aligned_cols=295 Identities=27% Similarity=0.344 Sum_probs=232.3
Q ss_pred HHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCC----CcchHHHHHHHHHHHhhccccCCCCCCccccC
Q 043885 393 KHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLV----DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYR 468 (765)
Q Consensus 393 ~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~----~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~ 468 (765)
+++++.|..+ ...+|...+..+.+|+|.|+++++++...+.. .+....++++++||.+.|..+
T Consensus 2 ~~~~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~d----------- 68 (300)
T cd00688 2 EKHLKYLLRY--PYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSD----------- 68 (300)
T ss_pred hhHHHHHHHc--cccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCC-----------
Confidence 4667777765 34566555554489999999999999998763 345789999999999999643
Q ss_pred CCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhc
Q 043885 469 HEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEM 548 (765)
Q Consensus 469 ~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~ 548 (765)
|||++.... ..+++++|+.++++|..+... + ....+.+.++++||+++|++||||..+......
T Consensus 69 ----G~~~~~~~~-~~~~~~~T~~~~~~l~~~~~~-----~-~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~----- 132 (300)
T cd00688 69 ----GGFSGWGGN-DYPSLWLTAYALKALLLAGDY-----I-AVDRIDLARALNWLLSLQNEDGGFREDGPGNHR----- 132 (300)
T ss_pred ----CCccCCCCC-CCcchHhHHHHHHHHHHcCCc-----c-ccCHHHHHHHHHHHHHccCCCCCeeeecCCCCc-----
Confidence 556554322 168999999999999987532 1 357789999999999999999999865432110
Q ss_pred cccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHH
Q 043885 549 LNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIK 628 (765)
Q Consensus 549 l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~ 628 (765)
...+.+.+.+|+.++.+|..++...+ ++.+.++++||.+.|++||+| ..|+.+.+|.|+.++.
T Consensus 133 ---------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~~ 195 (300)
T cd00688 133 ---------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAA 195 (300)
T ss_pred ---------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHHH
Confidence 11234577899999999998875321 367999999999999999999 7888899999999999
Q ss_pred HHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 043885 629 GLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRA 708 (765)
Q Consensus 629 aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~ra 708 (765)
+|...|.. ....++++++||+++|.+||||+.... . ....+++..|++++.+|...+.. .+...++++
T Consensus 196 aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~~-------~--~~~~~~~~~~~~~~~aL~~~~~~-~~~~~~~~~ 263 (300)
T cd00688 196 ALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGRD-------R--TNKLSDSCYTEWAAYALLALGKL-GDLEDAEKL 263 (300)
T ss_pred HHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCcccc-------C--CCCcCchHHHHHHHHHHHHHhhh-cCcccHHHH
Confidence 99998875 467899999999999999999987532 0 13457889999999999998764 123468999
Q ss_pred HHHHHhcCcCCCCCCCCccccccCCccccccCCccchHHHHHHHHH
Q 043885 709 ARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 709 v~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
++||+++|.++|+|..... ..++.|..+|.|.||+.|
T Consensus 264 ~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~aL~~~ 300 (300)
T cd00688 264 VKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLALSLY 300 (300)
T ss_pred HHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHHHhcC
Confidence 9999999999999987532 346778899999999865
No 17
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.91 E-value=4.8e-23 Score=226.25 Aligned_cols=222 Identities=20% Similarity=0.226 Sum_probs=170.6
Q ss_pred HHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHH
Q 043885 443 LKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVN 522 (765)
Q Consensus 443 l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~ 522 (765)
|+++++||.++|..+ |+|++.. +++.+|+.++.||...... +...+.+++|++
T Consensus 1 ~~~~~~~L~~~Q~~d---------------G~W~~~~-----~~~~~Ta~~~~al~~~g~~-------~~~~~~~~ka~~ 53 (348)
T cd02889 1 IRRALDFLLSLQAPD---------------GHWPGEY-----SQVWDTALALQALLEAGLA-------PEFDPALKKALE 53 (348)
T ss_pred CchHHHHHHHhccCC---------------CCccccC-----CchHHHHHHHHHHHHcCCC-------CccCHHHHHHHH
Confidence 468999999999864 6777643 6778899999999775421 346789999999
Q ss_pred HHHhcc--------------ccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchh
Q 043885 523 VVLSLQ--------------NSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRR 588 (765)
Q Consensus 523 ~Lls~Q--------------n~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~ 588 (765)
||++.| .++|||++.... ..++.++.|+.++.+|..++...+. ...
T Consensus 54 ~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~-------------------~~~~~~~~Ta~~l~al~~~~~~~~~-~~~ 113 (348)
T cd02889 54 WLLKSQIRDNPDDWKVKYRHLRKGGWAFSTAN-------------------QGYPDSDDTAEALKALLRLQKKPPD-GKK 113 (348)
T ss_pred HHHhcCCCCCCCchhhcCCCCCCCcCcccCcC-------------------CCCCCCCChHHHHHHHHHhhccCcc-cch
Confidence 999999 688999742211 1244577999999999987654221 223
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCC--------------------CCchhHHHHHHHHHHHcCCCCCCh-----HHH
Q 043885 589 EIEEFIAKGANFIESIQRPDGWWYGSWG--------------------VCFTYGTWFGIKGLVDSGRKYENS-----RSI 643 (765)
Q Consensus 589 ~i~~~I~rAv~~L~~~Q~~DGsW~g~wg--------------------~~~~YgT~~al~aL~aaG~~~~~~-----~~i 643 (765)
...+.|.++++||.+.|++||+|..... ......|++++.+|..+|...... +.+
T Consensus 114 ~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i 193 (348)
T cd02889 114 VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAI 193 (348)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 4568999999999999999999963211 123457999999999888754221 689
Q ss_pred HHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCC
Q 043885 644 RKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFP 723 (765)
Q Consensus 644 ~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~ 723 (765)
+|+++||++.|++||||.... +.+..+.|++++.||..+|.... .+.++++++||+++|.+||+|.
T Consensus 194 ~~a~~~L~~~q~~dG~w~~~~-------------~~~~~y~ta~a~~aL~~~g~~~~-~~~~~~~~~~L~~~Q~~dG~w~ 259 (348)
T cd02889 194 RRAVKYLEREQEPDGSWYGRW-------------GVCFIYGTWFALEALAAAGEDEN-SPYVRKACDWLLSKQNPDGGWG 259 (348)
T ss_pred HHHHHHHHHhCCCCCCccccC-------------CCcchHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCCCCcC
Confidence 999999999999999995431 12456789999999999987532 3579999999999999999998
Q ss_pred CC
Q 043885 724 QQ 725 (765)
Q Consensus 724 ~~ 725 (765)
..
T Consensus 260 ~~ 261 (348)
T cd02889 260 ES 261 (348)
T ss_pred Cc
Confidence 64
No 18
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.89 E-value=1.3e-21 Score=210.53 Aligned_cols=263 Identities=18% Similarity=0.128 Sum_probs=187.7
Q ss_pred CchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-------hhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhh
Q 043885 418 SQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIK-------TTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTT 490 (765)
Q Consensus 418 s~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~-------~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~T 490 (765)
|..+-..++...|.+++..+ ....+|+.+||. +.|..+ |.|.. |+ .....+.+..|
T Consensus 21 ~~~~p~~~~~~yl~~~~~~~--~~~~~~~~~~l~~g~~~~~~~q~~d---Gsf~~---------w~---~~~~~~~~wlT 83 (292)
T cd02897 21 VNFAPNIYVLDYLKATGQLT--PEIESKALGFLRTGYQRQLTYKHSD---GSYSA---------FG---ESDKSGSTWLT 83 (292)
T ss_pred HHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHhccCCC---CCeec---------cc---CCCCCcchhhH
Confidence 45566667777777777322 233455555554 567654 55532 21 11123556679
Q ss_pred HHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccc--cCCccCcH
Q 043885 491 AEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESII--DYQYVECT 568 (765)
Q Consensus 491 A~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~--d~~~~d~T 568 (765)
|+++++|..+.. +..++.+.|++|++||+++|++||||..++..... .|. +.+.+.+|
T Consensus 84 a~v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~--------------~~~~~~~~~~~~T 143 (292)
T cd02897 84 AFVLKSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHK--------------AMQGGVDDEVALT 143 (292)
T ss_pred HHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccCh--------------hhcCCCCCCcchH
Confidence 999999988752 34567899999999999999999999865432110 011 23457899
Q ss_pred HHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 043885 569 SSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACD 648 (765)
Q Consensus 569 a~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~ 648 (765)
+.|+.+|...+. +. .++.|+||++||.+.+.+ ++++|+++++..||..+|.. ....+.+.+.
T Consensus 144 A~vl~aL~~~g~--~~-----~~~~i~~a~~yL~~~~~~---------~~~~y~~al~a~AL~~~~~~--~~~~~~~~l~ 205 (292)
T cd02897 144 AYVLIALLEAGL--PS-----ERPVVEKALSCLEAALDS---------ISDPYTLALAAYALTLAGSE--KRPEALKKLD 205 (292)
T ss_pred HHHHHHHHhcCC--cc-----ccHHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHHcCCc--cHHHHHHHHH
Confidence 999999998764 22 247899999999998865 57899999999999999843 3445555566
Q ss_pred HHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccc
Q 043885 649 FLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIM 728 (765)
Q Consensus 649 ~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~ 728 (765)
++...++.+|+|++++.++....|.+ .+..+++..|||||+||+.++.. +.+.+.++++||+++|+.+|+|....
T Consensus 206 ~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sTQ-- 280 (292)
T cd02897 206 ELAISEDGTKHWSRPPPSEEGPSYYW-QAPSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSSTQ-- 280 (292)
T ss_pred HHHhccCCCCCCCcCCCcccccccCC-CCCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccHH--
Confidence 77777888899998765555555543 12356899999999999999742 23568999999999999999997531
Q ss_pred cccCCccccccCCccchHHHHHHHHH
Q 043885 729 GSFTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 729 g~f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
..++.|.||++|
T Consensus 281 --------------dt~~al~AL~~y 292 (292)
T cd02897 281 --------------DTVVALQALAKY 292 (292)
T ss_pred --------------HHHHHHHHHHcC
Confidence 367899999987
No 19
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.88 E-value=2.9e-21 Score=208.35 Aligned_cols=268 Identities=18% Similarity=0.122 Sum_probs=190.2
Q ss_pred chhHHHHHHHHHHHcCCC--------CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhh
Q 043885 419 QLWDTAFAVHAILSTNLV--------DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTT 490 (765)
Q Consensus 419 ~~WDTalai~AL~~ag~~--------~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~T 490 (765)
..+-+.++..-|.+++.- ++....|+++++.+.+.|..+ |+|. .|+- ..+++-.|
T Consensus 22 ~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---Gsf~---------~w~~-----~~~s~wlT 84 (297)
T cd02896 22 KLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPD---GSYA---------AWKN-----RPSSTWLT 84 (297)
T ss_pred HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCC---CCcc---------CCCC-----CCcchhhH
Confidence 345555666666665431 134566899999999998865 6653 3321 12445579
Q ss_pred HHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHH
Q 043885 491 AEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSS 570 (765)
Q Consensus 491 A~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~ 570 (765)
|.++++|..+.+ .+ .++++.+.++++||+++|++||+|....+... .+..+...-+++.+..|+.
T Consensus 85 A~v~~~l~~a~~-----~~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~---------~~m~gg~~~~~~~~~lTA~ 149 (297)
T cd02896 85 AFVVKVFSLARK-----YI-PVDQNVICGSVNWLISNQKPDGSFQEPSPVIH---------REMTGGVEGSEGDVSLTAF 149 (297)
T ss_pred HHHHHHHHHHHH-----cC-CCCHHHHHHHHHHHHhcCCCCCeeCCCCCccC---------hhccCCccccCCCccchHH
Confidence 999999988753 12 56889999999999999999999985321110 0111111112467889999
Q ss_pred HHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 043885 571 TIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFL 650 (765)
Q Consensus 571 ~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~L 650 (765)
|+.+|...+...+.. ..++++.|.||++||.+.|.+ ++++|+++.+..||..+|.+ ...++.++|
T Consensus 150 vl~aL~~~~~~~~~~-~~~~~~~i~rA~~yL~~~~~~---------~~~~Y~~Al~ayALal~~~~-----~~~~a~~~L 214 (297)
T cd02896 150 VLIALQEARSICPPE-VQNLDQSIRKAISYLENQLPN---------LQRPYALAITAYALALADSP-----LSHAANRKL 214 (297)
T ss_pred HHHHHHhhhcccccc-chhhHHHHHHHHHHHHHhccc---------CCChHHHHHHHHHHHHcCCh-----hhHHHHHHH
Confidence 999999886543322 223567899999999998864 56899999999999888643 678999999
Q ss_pred HhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccc
Q 043885 651 LSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGS 730 (765)
Q Consensus 651 ls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~ 730 (765)
++.|+.||||++++.+ .++.+.+-.+...++..|||||+||+..|.. +.+.++++||.++|+.+|+|....
T Consensus 215 ~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~vE~TAYALLall~~~~~----~~a~~iv~WL~~qr~~~Ggf~sTQ---- 285 (297)
T cd02896 215 LSLAKRDGNGWYWWTI-DSPYWPVPGPSAITVETTAYALLALLKLGDI----EYANPIARWLTEQRNYGGGFGSTQ---- 285 (297)
T ss_pred HHHhhhCCCcceeccC-cCccCCCCCCchhhhHHHHHHHHHHHhcCCc----hhHHHHHHHHHhcCCCCCCeehHH----
Confidence 9999999999987665 2333322111223799999999999999843 358899999999999999997431
Q ss_pred cCCccccccCCccchHHHHHHHHH
Q 043885 731 FTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 731 f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
-.+-.|-||++|
T Consensus 286 ------------dTvval~AL~~y 297 (297)
T cd02896 286 ------------DTVVALQALAEY 297 (297)
T ss_pred ------------HHHHHHHHHhcC
Confidence 245678888876
No 20
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.87 E-value=4.2e-21 Score=216.15 Aligned_cols=490 Identities=17% Similarity=0.121 Sum_probs=301.9
Q ss_pred HHHHHHHHHHhcCCCCCCccc--cCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcc
Q 043885 101 TLRRALRFYSTLQSEDGFWPG--DYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGEST 178 (765)
Q Consensus 101 al~~a~~~l~~~Q~~DG~W~~--~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~ 178 (765)
-....++|+-.+|++||.|+- +-.+-||.|.--+++|+++|+....-+.-..++++.+|..| || -
T Consensus 148 hr~Eliry~ynhqn~DGGWGlhve~~S~mF~TvlNYi~LRilG~~~~~~~~~a~~~aR~wild~----GG---------a 214 (760)
T KOG0497|consen 148 HRKEILRYIYNHQNEDGGWGLHVEGKSTMFCTVLNYICLRILGEGPDHGDESACKRARKWILDH----GG---------A 214 (760)
T ss_pred cHHHHHHHHHhccCCCCCccccccCceeEEEeeehheeheeeccCCCCCchhHHHHHHHHHHHc----CC---------c
Confidence 445578899999999999996 45677888999999999999653222233466688888885 66 1
Q ss_pred hhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCCCCc
Q 043885 179 MLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGR 258 (765)
Q Consensus 179 m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~~~~ 258 (765)
+++..-+=+-|-.||. +-.+++|.|..-+-++||...++.+++++.++.+++.++|.
T Consensus 215 ~~~p~wgK~wLsvLgv-----------------------ydWsG~np~pPElwllP~~~P~h~g~~w~~~R~vy~pmsYl 271 (760)
T KOG0497|consen 215 TYIPSWGKFWLSVLGV-----------------------YDWSGVNPLPPELWLLPSFLPIHPGTLWCHCRDVYMPMSYL 271 (760)
T ss_pred cccchhhHHHHHhccc-----------------------ccCcCCCCCCchhhccccccCCCCCceEEEecceecccccc
Confidence 1111111123333443 44556677777778899999999999999999999999999
Q ss_pred ccccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccc---hhhhhhhccccc--cCCCCchhHHHH-------
Q 043885 259 MWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKID---WNRARFLCAQED--LYRQHPMFQDML------- 326 (765)
Q Consensus 259 ~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~---w~~~R~~~a~~d--~~~p~~~~~~~~------- 326 (765)
.+++.+.++.||.+.++++.-.+-...|.-++.+.++..++.+. +.+.|-.-.-+- .|--.+|...++
T Consensus 272 ygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~ 351 (760)
T KOG0497|consen 272 YGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLLNRWPLKLIREKALRT 351 (760)
T ss_pred eeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999998877677788888888876665531 111111000000 000011111000
Q ss_pred -HHH---------------HHHHhhhhhccC---CCHHHHHHHHHHHHHhhhhcCCCccc-eeec-hHHH-HHHHhhccc
Q 043885 327 -WNF---------------SHKVAEPLLKKW---PFSKIRQIALDTVMKHIHCEDENTQY-ICIA-GVNK-VLNMLCRWV 384 (765)
Q Consensus 327 -~~~---------------l~~~~e~~~~~~---p~~~lr~~Al~~~~~~i~~ede~t~y-~~i~-~v~~-~l~ml~~~~ 384 (765)
+.. +.++.+. +.+| |.+..-++-+..+.+.| ...+++.- -+.+ -++. ++.+-+...
T Consensus 352 ~me~ihyede~t~yi~ig~v~k~~~m-l~cwvedp~s~~Fkkhl~Ri~d~l-w~gedGmkmq~~~sQ~Wdt~falqalla 429 (760)
T KOG0497|consen 352 AMELIHYEDENTRYITIGPVNKAFNM-LACWVEDPNSDAFKKHLARIPDFL-WIAEDGMKMQGFNSQLWDTAFALQALLA 429 (760)
T ss_pred HHHHhhhhhcccCceecccchhhhcc-eeeeeeccchHHHHHHhccccCeE-EEcCCCceEeecchhHHHHHHHHHHHHh
Confidence 000 0111111 1222 22233333333333332 11122211 1112 1222 122211112
Q ss_pred cCCCcHHHHHHHHHHhhhheec---c--CC----ceeeccCCC-------chh----HHHHHHHHHHHcCCCC-c-----
Q 043885 385 EDPNSEAYKHHLARIKDYLWVA---E--DG----MKMQAYNGS-------QLW----DTAFAVHAILSTNLVD-E----- 438 (765)
Q Consensus 385 ~~p~~~~~~~~l~~l~~~l~~~---~--dG----~~~q~~~gs-------~~W----DTalai~AL~~ag~~~-~----- 438 (765)
.+++ ++|+.-+++-.+|+-.. + .| |.-|.+-|+ |-| .||=++...+=.+..+ +
T Consensus 430 ~~~~-~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~ 508 (760)
T KOG0497|consen 430 AGLV-DEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEK 508 (760)
T ss_pred cCCc-HHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCC
Confidence 2454 67777777777776422 1 11 222322222 212 3444433222222211 1
Q ss_pred -chHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCC--------CCCCCCCCCCChhhhHHHHHHHHHhccccccccC
Q 043885 439 -YGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGW--------PFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVG 509 (765)
Q Consensus 439 -~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW--------~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g 509 (765)
..+.|-.|++.|+..|... |++..+- ..+.+-| .|.+...-++-+.||..++.||....+.-++. -
T Consensus 509 ~~~erL~dav~~Ll~lq~~~---Gg~~~~e-~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~-r 583 (760)
T KOG0497|consen 509 IDVERLYDAVDVLLYLQSEN---GGFAAYE-PARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGH-R 583 (760)
T ss_pred CCHHHHHHHHHHHHhhhhcc---Ccccccc-ccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccH-H
Confidence 1567899999999999654 6655432 1222333 34455555788899999999998876532210 0
Q ss_pred CCCChHHHHHHHHHHHhccccCCCcc-ccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchh
Q 043885 510 EAIPLNRLFEAVNVVLSLQNSSGGVA-SYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRR 588 (765)
Q Consensus 510 ~~~~~~~l~~av~~Lls~Qn~dGGw~-~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~ 588 (765)
......+|.+||.||.++|-+||+|. .|...- ...|-.++.+|...++.+-.
T Consensus 584 ~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCF-----------------------tY~t~Fa~~gl~aaGkty~n---- 636 (760)
T KOG0497|consen 584 KKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCF-----------------------TYGTWFALRGLAAAGKTYEN---- 636 (760)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHH-----------------------HHHHHHhcchhhhcchhhhc----
Confidence 11235689999999999999999994 332210 12467778889888876544
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-------------chhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhccc
Q 043885 589 EIEEFIAKGANFIESIQRPDGWWYGSWGVC-------------FTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQL 655 (765)
Q Consensus 589 ~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~-------------~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~ 655 (765)
-.+|+||++||.+.|++||+|..+.-.| .+-+|++|+++|..+|....+.-.+.||++.|...|.
T Consensus 637 --c~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~ 714 (760)
T KOG0497|consen 637 --CEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQL 714 (760)
T ss_pred --cHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhccc
Confidence 3689999999999999999997655433 3458999999999999875555589999999999999
Q ss_pred CCCccccc
Q 043885 656 DSGGWGES 663 (765)
Q Consensus 656 ~DGGWGes 663 (765)
++|-|+..
T Consensus 715 ~nGdfpqq 722 (760)
T KOG0497|consen 715 ENGDFPQQ 722 (760)
T ss_pred ccCCcchh
Confidence 99999653
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.83 E-value=9.7e-19 Score=184.39 Aligned_cols=244 Identities=23% Similarity=0.205 Sum_probs=179.3
Q ss_pred CCcHHHHHHHHHHhhhheeccCCceeecc-C-CCchhHHHHHHHHHHHcCCC-CcchHHHHHHHHHHHhhccccCCCCCC
Q 043885 387 PNSEAYKHHLARIKDYLWVAEDGMKMQAY-N-GSQLWDTAFAVHAILSTNLV-DEYGSMLKKANNYIKTTQVRTKSFEDP 463 (765)
Q Consensus 387 p~~~~~~~~l~~l~~~l~~~~dG~~~q~~-~-gs~~WDTalai~AL~~ag~~-~~~~~~l~kA~~~L~~~Q~~~~~~Gd~ 463 (765)
.....+++++++|.++. ..||...... + .+.+|+|++++++|...+-. ....+.++++++||++.|..+ |+|
T Consensus 49 ~~~~~~~~~~~~l~~~q--~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~ 123 (300)
T cd00688 49 KADENIEKGIQRLLSYQ--LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED---GGF 123 (300)
T ss_pred cchHHHHHHHHHHHhcc--CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCC---CCe
Confidence 35667899999998863 5677433222 1 46899999999999988753 123678999999999999864 666
Q ss_pred ccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCc
Q 043885 464 SCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSY 543 (765)
Q Consensus 464 ~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~ 543 (765)
....+...+ .....+++++|+.+|.+|..+... ...+.+.++++||.++|++||||.. .
T Consensus 124 ~~~~~~~~~-------~~~~~~~~~~t~~al~aL~~~~~~--------~~~~~~~~~~~~l~~~q~~~g~~~~---~--- 182 (300)
T cd00688 124 REDGPGNHR-------IGGDESDVRLTAYALIALALLGKL--------DPDPLIEKALDYLLSCQNYDGGFGP---G--- 182 (300)
T ss_pred eeecCCCCc-------ccCCCCcccHHHHHHHHHHHcCCC--------CCcHHHHHHHHHHHHHhcCCCCcCC---C---
Confidence 543221110 112357889999999999877431 1267899999999999999999911 0
Q ss_pred chhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCC----CCCc
Q 043885 544 AWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSW----GVCF 619 (765)
Q Consensus 544 ~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~w----g~~~ 619 (765)
..+.+..|+.++.+|..++.. ....++++++||.+.|.+||+|...+ ....
T Consensus 183 -----------------~~~~~~~t~~~~~aL~~~~~~--------~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~ 237 (300)
T cd00688 183 -----------------GESHGYGTACAAAALALLGDL--------DSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237 (300)
T ss_pred -----------------ccccHHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence 012445689999999887642 13679999999999999999997654 1234
Q ss_pred hhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHH
Q 043885 620 TYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIE 694 (765)
Q Consensus 620 ~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~ 694 (765)
.+.|.+++.+|...+.. ...+.++++++||++.|+++|||+... ...++...|++||+||..
T Consensus 238 ~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~------------~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 238 SCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKP------------GKSYDTQHTVFALLALSL 299 (300)
T ss_pred hHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCC------------CCCCcchhhHHHHHHHhc
Confidence 55677778888877654 245688999999999999999997642 234668899999999964
No 22
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.79 E-value=2.5e-17 Score=176.74 Aligned_cols=279 Identities=16% Similarity=0.138 Sum_probs=199.0
Q ss_pred HHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhc-cccCCCCCCccccCCCC
Q 043885 393 KHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQ-VRTKSFEDPSCWYRHEF 471 (765)
Q Consensus 393 ~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q-~~~~~~Gd~~~~~~~~~ 471 (765)
++|++.+.+.+- .++...+..+.+.+|-|-+++.+|.-.|.... ...++++++||++.| ..+
T Consensus 2 ~~h~~~l~~~~~--~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~-~~~~~~~i~~l~~~q~~~~-------------- 64 (286)
T cd02890 2 EKHIKYLQRCLK--LLPSSYTSLDASRLWLLYWILSSLDLLGEDLD-DENKDEIIDFIYSCQVNED-------------- 64 (286)
T ss_pred hHHHHHHHHHhh--cCChhhhhHHhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHhhcCCC--------------
Confidence 578888887643 34666777777889999999999998886322 578999999999999 542
Q ss_pred CCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccc
Q 043885 472 QEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNP 551 (765)
Q Consensus 472 ~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p 551 (765)
|||+++ +...++...|..|+.+|..+... .......+++++||.++|++||||..-. ..
T Consensus 65 -Ggf~~~--~~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~~~-~~---------- 123 (286)
T cd02890 65 -GGFGGG--PGQDPHLASTYAAVLSLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRGDL-GG---------- 123 (286)
T ss_pred -CCCCCC--CCCCccHHHHHHHHHHHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCcccCC-CC----------
Confidence 455554 23568888999999999887520 0123345789999999999999996421 00
Q ss_pred ccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchhHHHHHHHHH
Q 043885 552 VENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWG-VCFTYGTWFGIKGL 630 (765)
Q Consensus 552 ~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg-~~~~YgT~~al~aL 630 (765)
.+.+..|-.++.+|..++... +..+++.++||.+.|++||+|.++-+ ...+-.|++++.+|
T Consensus 124 ----------~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL 185 (286)
T cd02890 124 ----------EVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASL 185 (286)
T ss_pred ----------CchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHH
Confidence 012223555666776665421 25689999999999999999976533 23344477888888
Q ss_pred HHcCCCCCChHHHHHHHHHHHhcccCCC-ccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 043885 631 VDSGRKYENSRSIRKACDFLLSKQLDSG-GWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAA 709 (765)
Q Consensus 631 ~aaG~~~~~~~~i~rav~~Lls~Q~~DG-GWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav 709 (765)
...|.. ....+++.++||+++|+.+| |+... .+..+++..|.|++-+|...+... ....++-.
T Consensus 186 ~~l~~~--~~~~~~~~~~~L~~~q~~~ggGf~g~------------~~~~~d~~yt~~~~~~l~~l~~~~--~~~~~~l~ 249 (286)
T cd02890 186 ALLGRL--DLIDKERLLRWLVERQLASGGGFNGR------------PNKLVDTCYSFWVGASLKILGRLH--LIDQEKLR 249 (286)
T ss_pred HHcCCC--cccCHHHHHHHHHHhCCCCCCCcCCC------------CCCCCccchhhHHHHHHHHccccc--ccCHHHHH
Confidence 888875 35678999999999999998 77443 145678889999999999887642 23467788
Q ss_pred HHHH-hcCcCCCCCCCCccccccCCccccccCCccchHHHHHHH
Q 043885 710 RVLI-NSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALG 752 (765)
Q Consensus 710 ~~L~-~~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg 752 (765)
+||+ .+|.++|+|.... |..+..| -..|.|.+|+
T Consensus 250 ~~l~~~~q~~~Ggf~~~~--~~~~d~~-------~T~~~l~~ls 284 (286)
T cd02890 250 EYILSCQQSEVGGFSDKP--GKPPDLY-------HTYYGLSGLS 284 (286)
T ss_pred HHHHhhcCCCCCCcCCCC--CCCCCch-------hHHHHHHHHH
Confidence 8999 6788999996431 3333333 3556777665
No 23
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.77 E-value=1.2e-17 Score=179.30 Aligned_cols=199 Identities=22% Similarity=0.202 Sum_probs=155.8
Q ss_pred CChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhcc-ccCCCccccccCCCcchhhccccccccccccccCC
Q 043885 485 IATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQ-NSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQ 563 (765)
Q Consensus 485 pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Q-n~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~ 563 (765)
+..-.|=.+|.+|..+. .++....++++++||+++| ++||||+.... +++
T Consensus 25 ~~~~~~y~~l~~l~ll~--------~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~---------------------~~~ 75 (286)
T cd02890 25 SRLWLLYWILSSLDLLG--------EDLDDENKDEIIDFIYSCQVNEDGGFGGGPG---------------------QDP 75 (286)
T ss_pred hHHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHHhhcCCCCCCCCCCC---------------------CCc
Confidence 44555777777777663 3467788999999999999 99999986421 245
Q ss_pred ccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCchhHHHHHHHHHHHcCCCCCChHH
Q 043885 564 YVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGS-WGVCFTYGTWFGIKGLVDSGRKYENSRS 642 (765)
Q Consensus 564 ~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~-wg~~~~YgT~~al~aL~aaG~~~~~~~~ 642 (765)
.+..|..++.+|..++.. .+. ...++++++||.+.|++||+|.+. ++..+++.|..++.+|...|.. ....
T Consensus 76 ~~~~T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~--~~~~ 147 (286)
T cd02890 76 HLASTYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNIL--TDID 147 (286)
T ss_pred cHHHHHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCc--hhhh
Confidence 567899999999998752 011 123678999999999999999775 5667788888999999988876 3578
Q ss_pred HHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCC-C
Q 043885 643 IRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENG-D 721 (765)
Q Consensus 643 i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG-~ 721 (765)
+++.++||+++|++||||++. ++++|++..|+||+.+|...|..+ +..+++.++||+++|..+| +
T Consensus 148 ~~~~~~~l~~~Q~~dGGf~~~------------~~~es~~~~t~~av~sL~~l~~~~--~~~~~~~~~~L~~~q~~~ggG 213 (286)
T cd02890 148 KEKLIDYILSCQNYDGGFGGV------------PGAESHGGYTFCAVASLALLGRLD--LIDKERLLRWLVERQLASGGG 213 (286)
T ss_pred HHHHHHHHHHhCCCCCCcCCC------------CCCCCCccHhHHHHHHHHHcCCCc--ccCHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999875 156799999999999999998764 3458999999999999987 6
Q ss_pred CCCCccccccCCccc
Q 043885 722 FPQQEIMGSFTRNCM 736 (765)
Q Consensus 722 w~~~~~~g~f~~~~~ 736 (765)
|... .+..+..||
T Consensus 214 f~g~--~~~~~d~~y 226 (286)
T cd02890 214 FNGR--PNKLVDTCY 226 (286)
T ss_pred cCCC--CCCCCccch
Confidence 6543 233445554
No 24
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.73 E-value=2.3e-16 Score=171.50 Aligned_cols=222 Identities=22% Similarity=0.268 Sum_probs=157.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHH
Q 043885 442 MLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAV 521 (765)
Q Consensus 442 ~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av 521 (765)
.++|.++||.+.|.. +|.|. ....++.+. -.+-.+|.+|..+... .....++.+
T Consensus 9 ~~~kh~~yl~~~~~~---~~~~~------------~~~~~~~r~--~~~y~~l~~L~lL~~~---------~~~~~~~~i 62 (316)
T PLN03201 9 VVDKHVRYIKSLEKK---KDSFE------------SVVMEHLRM--NGAYWGLTALDLLGKL---------DDVDRDEVV 62 (316)
T ss_pred cHHHHHHHHHHhCCC---CCCcc------------ccccccchH--HHHHHHHHHHHHhCCC---------ccccHHHHH
Confidence 468999999998763 23332 111111111 1132355566555421 123347899
Q ss_pred HHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHH
Q 043885 522 NVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFI 601 (765)
Q Consensus 522 ~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L 601 (765)
+||+++|++||||+.++.. .+....|-.++++|..+.+. ..++ .+++++||
T Consensus 63 ~~l~~cq~~~GGF~~~~~~---------------------~~h~~~Ty~al~~L~ll~~~------~~id--~~~~~~~l 113 (316)
T PLN03201 63 SWVMRCQHESGGFGGNTGH---------------------DPHILYTLSAVQILALFDRL------DLLD--ADKVASYV 113 (316)
T ss_pred HHHHHhcCCCCCcCCCCCC---------------------cccHHHHHHHHHHHHHhhhh------hhhh--HHHHHHHH
Confidence 9999999999999864321 12445688888888887431 1122 56799999
Q ss_pred HHhcCCCCCCCC-CCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCC
Q 043885 602 ESIQRPDGWWYG-SWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKA 680 (765)
Q Consensus 602 ~~~Q~~DGsW~g-~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S 680 (765)
.+.|++||+|.+ .++.+.+..|..|+.+|.-.+.. +...++++++||+++|+.||||+... +++|
T Consensus 114 ~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~p------------~~es 179 (316)
T PLN03201 114 AGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCTP------------GGES 179 (316)
T ss_pred HHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCCC------------CCCC
Confidence 999999999987 58877777777787777766643 34568999999999999999998752 5788
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccc
Q 043885 681 HNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCM 736 (765)
Q Consensus 681 ~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~ 736 (765)
+...|.||+.+|...|..+. ...++.++||+++|..+|+|... ++.++..||
T Consensus 180 h~g~T~caiaaL~llg~~~~--~d~~~l~~wL~~rQ~~~GGf~gr--p~k~~D~cy 231 (316)
T PLN03201 180 HAGQIFCCVGALAITGSLHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVCY 231 (316)
T ss_pred ccceehHHHHHHHHcCcccc--CCHHHHHHHHHHhCCCCCCcCCC--CCCCCchHH
Confidence 99999999999999886532 12466789999999999999754 456777776
No 25
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.72 E-value=1.8e-15 Score=162.71 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=189.1
Q ss_pred HHHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCC
Q 043885 392 YKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEF 471 (765)
Q Consensus 392 ~~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~ 471 (765)
..+|++.+.+.+-.. .+...+..+.+-.|-|=+++.+|.-.|..+. -..++.++||++.|... .|++.
T Consensus 3 ~~~h~~y~~~~~~~~-~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~--~~~~~~i~fl~~~q~~~--~GgF~------- 70 (287)
T cd02894 3 LEKHIEYILSLTKKK-DDYEYILTEHLRMSGIYWGLTALDLLGQLER--LNREEIIEFVKSCQDNE--DGGFG------- 70 (287)
T ss_pred HHHHHHHHHHhcccc-CChhhhhHHhhHHHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHHhcCC--CCCCC-------
Confidence 467888888765321 2233444445667888888888887775432 34699999999999532 25543
Q ss_pred CCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccc
Q 043885 472 QEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNP 551 (765)
Q Consensus 472 ~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p 551 (765)
-.. ..-|+.-.|-.|+.+|..+... ...++..+++++||+++|++||||..-...
T Consensus 71 -----~~~--~~~~~~~~t~~a~~~L~ll~~~-------~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~----------- 125 (287)
T cd02894 71 -----GSP--GHDPHILSTLSAIQILALYDLL-------NKIDENKEKIAKFIKGLQNEDGSFSGDKWG----------- 125 (287)
T ss_pred -----CCC--CCcchHHHHHHHHHHHHHhhhh-------hhccHHHHHHHHHHHHHcCCCCCeecCCCC-----------
Confidence 111 1124555677777777665321 112335788999999999999999742110
Q ss_pred ccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCC-CCCchhHHHHHHHHH
Q 043885 552 VENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSW-GVCFTYGTWFGIKGL 630 (765)
Q Consensus 552 ~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~w-g~~~~YgT~~al~aL 630 (765)
.+.+..|-.++.+|.+.++. . . ..++++++||.+.|++||+|.++- +...+-.|++++.+|
T Consensus 126 ----------e~d~~~ty~a~~~l~ll~~~-~-----~--i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL 187 (287)
T cd02894 126 ----------EVDTRFSYCAVLCLTLLGKL-D-----L--IDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGAL 187 (287)
T ss_pred ----------CchHHHHHHHHHHHHHhCCc-c-----h--hhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence 01112255566666666432 1 1 237999999999999999998753 334444577888888
Q ss_pred HHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 043885 631 VDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAAR 710 (765)
Q Consensus 631 ~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~ 710 (765)
...|.. +...+.++++||+++|+++||++... +..+++..|-|++.+|...+... ....++..+
T Consensus 188 ~llg~~--~~~~~~~~~~~L~~~q~~~GGf~gr~------------~k~~D~~ysf~~~a~l~~l~~~~--~~~~~~l~~ 251 (287)
T cd02894 188 AILGSL--DLIDRDRLGWWLCERQLPSGGLNGRP------------EKLPDVCYSWWVLSSLKIIGRLH--WINKNKLKN 251 (287)
T ss_pred HHcCcc--cccCHHHHHHHHHHhCCCCCCcCCCC------------CCCCchhHhhHHHHHHHHhcccc--ccCHHHHHH
Confidence 888865 23458899999999999999996541 46688999999999998887643 123788899
Q ss_pred HHHhcC-cCCCCCCCCccccccCCccccccCCccchHHHHHHH
Q 043885 711 VLINSQ-MENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALG 752 (765)
Q Consensus 711 ~L~~~Q-~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg 752 (765)
||+++| .++|+|...+ +..+.. |-..|.|-+|+
T Consensus 252 ~l~~~q~~~~GGf~~~p--~~~~D~-------~ht~~~l~~Ls 285 (287)
T cd02894 252 FILACQDEEDGGFADRP--GNMVDV-------FHTFFGLAGLS 285 (287)
T ss_pred HHHHhcCCCCCCcCCCC--CCCCCh-------hHHHHHHHHHH
Confidence 999999 5789996532 334433 33567777765
No 26
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.69 E-value=9.7e-16 Score=164.73 Aligned_cols=193 Identities=26% Similarity=0.285 Sum_probs=138.2
Q ss_pred hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhcc-ccCCCccccccCCCcchhhccccccccccccccCCccCcH
Q 043885 490 TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQ-NSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECT 568 (765)
Q Consensus 490 TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Q-n~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~T 568 (765)
|=.+|.+|..+.. ......++.++||+++| +.+|||...... .+.+..|
T Consensus 33 ~y~~l~~l~lL~~---------~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~---------------------~~~~~~t 82 (287)
T cd02894 33 IYWGLTALDLLGQ---------LERLNREEIIEFVKSCQDNEDGGFGGSPGH---------------------DPHILST 82 (287)
T ss_pred HHHHHHHHHHhCC---------CchhhHHHHHHHHHHHhcCCCCCCCCCCCC---------------------cchHHHH
Confidence 4445556655532 12234588899999999 789999753211 1233457
Q ss_pred HHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCchhHHHHHHHHHHHcCCCCCChHHHHHHH
Q 043885 569 SSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGS-WGVCFTYGTWFGIKGLVDSGRKYENSRSIRKAC 647 (765)
Q Consensus 569 a~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~-wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav 647 (765)
-.++..|..++.. ..+++.++++++||.+.|++||+|.+. ++...+..|..|+.+|...+.. +...+++++
T Consensus 83 ~~a~~~L~ll~~~------~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~i~~~~~~ 154 (287)
T cd02894 83 LSAIQILALYDLL------NKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL--DLIDVDKAV 154 (287)
T ss_pred HHHHHHHHHhhhh------hhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc--chhhHHHHH
Confidence 7788888876421 124556899999999999999999875 7754443444444445444543 355689999
Q ss_pred HHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcc
Q 043885 648 DFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEI 727 (765)
Q Consensus 648 ~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~ 727 (765)
+||+++|++||||++. +++.++...|.||+.+|...|..+. ..+++.++||.++|..+|+|...
T Consensus 155 ~~l~~~q~~dGGF~~~------------~~~es~~~~t~cavasL~llg~~~~--~~~~~~~~~L~~~q~~~GGf~gr-- 218 (287)
T cd02894 155 DYLLSCYNFDGGFGCR------------PGAESHAGQIFCCVGALAILGSLDL--IDRDRLGWWLCERQLPSGGLNGR-- 218 (287)
T ss_pred HHHHHcCCCCCCcCCC------------CCCCCchhHHHHHHHHHHHcCcccc--cCHHHHHHHHHHhCCCCCCcCCC--
Confidence 9999999999999875 2577999999999999999987642 24899999999999999999543
Q ss_pred ccccCCccc
Q 043885 728 MGSFTRNCM 736 (765)
Q Consensus 728 ~g~f~~~~~ 736 (765)
++..+..||
T Consensus 219 ~~k~~D~~y 227 (287)
T cd02894 219 PEKLPDVCY 227 (287)
T ss_pred CCCCCchhH
Confidence 344555554
No 27
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.64 E-value=2.7e-16 Score=144.46 Aligned_cols=109 Identities=31% Similarity=0.429 Sum_probs=85.0
Q ss_pred HHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHH--HH
Q 043885 521 VNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAK--GA 598 (765)
Q Consensus 521 v~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~r--Av 598 (765)
|+||+++||+||||+.+ . .++.+.+|+.++.+|..++...+ .++ |+
T Consensus 1 v~~L~~~Q~~dGgw~~~--~--------------------~~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~ 48 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF--G--------------------GPSDVWDTAFALLALAALGEEPD----------RDRAAAV 48 (113)
T ss_dssp HHHHHHHB-TTSSBBSS--T--------------------S-BEHHHHHHHHHHHHHHTSHHC----------HHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC--C--------------------CCCCHHHHHHHHHHHHHhCCccc----------HHHHHHH
Confidence 78999999999999964 1 13567789999999998875321 233 69
Q ss_pred HHHHHhcCCCCCCCCCC--CCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcccc
Q 043885 599 NFIESIQRPDGWWYGSW--GVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGE 662 (765)
Q Consensus 599 ~~L~~~Q~~DGsW~g~w--g~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGe 662 (765)
+||++.|++||+|.... ....+|.|+.++.+|...+... ..+.++|+++||+++|++||||++
T Consensus 49 ~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~-~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 49 EWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD-DEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG-CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999999998765 3467889999999999888774 368999999999999999999974
No 28
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.63 E-value=5.2e-16 Score=142.63 Aligned_cols=110 Identities=28% Similarity=0.429 Sum_probs=87.9
Q ss_pred HHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHH--HHHHHhcccCCCccccccccccccccccC
Q 043885 598 ANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKA--CDFLLSKQLDSGGWGESYVSCVDRVYTNL 675 (765)
Q Consensus 598 v~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~ra--v~~Lls~Q~~DGGWGes~~s~~~~~Y~~l 675 (765)
|+||++.|++||+|...+..+.++.|++++.+|..+|... + .+++ ++||+++|++||||+....
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~-~---~~~~~~~~~L~~~q~~dGg~~~~~~---------- 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEEP-D---RDRAAAVEWLLSQQNPDGGWGSNPD---------- 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHH-C---HHHHHHHHHHHHHB-TTSGBBSSTT----------
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCcc-c---HHHHHHHHHHHHhCCCCCCccCCCC----------
Confidence 6899999999999987666788999999999999999874 2 4555 9999999999999987521
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCC
Q 043885 676 EGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFP 723 (765)
Q Consensus 676 ~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~ 723 (765)
+..+++..|++++++|...+..+. .+.++|+++||+++|++||+|.
T Consensus 67 -~~~~~~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 67 -GGPPDVYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp -TT-BSHHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB-TTSSB-
T ss_pred -CCCccHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCC
Confidence 345778999999999999886542 2469999999999999999995
No 29
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.62 E-value=3e-14 Score=153.97 Aligned_cols=226 Identities=16% Similarity=0.051 Sum_probs=159.3
Q ss_pred HHHHHHHHhhhheeccCCce-eeccCCCchhHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHhhccccCCCCCCccccCC
Q 043885 392 YKHHLARIKDYLWVAEDGMK-MQAYNGSQLWDTAFAVHAILSTNLVDE-YGSMLKKANNYIKTTQVRTKSFEDPSCWYRH 469 (765)
Q Consensus 392 ~~~~l~~l~~~l~~~~dG~~-~q~~~gs~~WDTalai~AL~~ag~~~~-~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~ 469 (765)
++++++++..| ...||.. .-+.+.+.+|.|||++.+|..++.... ....|++|++||.+.|..+ |+|....+-
T Consensus 54 i~~g~~r~l~~--q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d---G~f~e~~~~ 128 (297)
T cd02896 54 IRQGYQRQLSY--RKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPD---GSFQEPSPV 128 (297)
T ss_pred HHHHHHHHHhc--cCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCC---CeeCCCCCc
Confidence 67788888877 4567732 112336789999999999988753211 2578999999999999865 888764332
Q ss_pred CC---CCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchh
Q 043885 470 EF---QEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWM 546 (765)
Q Consensus 470 ~~---~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~l 546 (765)
+. .||+... .++++.||.++.+|+......+.. .....+.+.+|++||.++|++ .+
T Consensus 129 ~~~~m~gg~~~~-----~~~~~lTA~vl~aL~~~~~~~~~~--~~~~~~~i~rA~~yL~~~~~~--------~~------ 187 (297)
T cd02896 129 IHREMTGGVEGS-----EGDVSLTAFVLIALQEARSICPPE--VQNLDQSIRKAISYLENQLPN--------LQ------ 187 (297)
T ss_pred cChhccCCcccc-----CCCccchHHHHHHHHhhhcccccc--chhhHHHHHHHHHHHHHhccc--------CC------
Confidence 22 2344221 257889999999998875321100 012456899999999998764 00
Q ss_pred hccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCC--------C--
Q 043885 547 EMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSW--------G-- 616 (765)
Q Consensus 547 e~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~w--------g-- 616 (765)
++..++.+.-||.+.+. +...++.++|.+.|..||+|...| +
T Consensus 188 -----------------~~Y~~Al~ayALal~~~-----------~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (297)
T cd02896 188 -----------------RPYALAITAYALALADS-----------PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPG 239 (297)
T ss_pred -----------------ChHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCC
Confidence 12237777778877643 257889999999999999885322 1
Q ss_pred CC--chhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHH
Q 043885 617 VC--FTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIE 694 (765)
Q Consensus 617 ~~--~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~ 694 (765)
.. .+-.|++||.+|...|. ...+.++++||.++||.+|||+.+ =-|..||.||..
T Consensus 240 ~~~~~vE~TAYALLall~~~~----~~~a~~iv~WL~~qr~~~Ggf~sT-------------------QdTvval~AL~~ 296 (297)
T cd02896 240 PSAITVETTAYALLALLKLGD----IEYANPIARWLTEQRNYGGGFGST-------------------QDTVVALQALAE 296 (297)
T ss_pred CchhhhHHHHHHHHHHHhcCC----chhHHHHHHHHHhcCCCCCCeehH-------------------HHHHHHHHHHhc
Confidence 11 35679999999998873 246789999999999999999642 358999999864
No 30
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.62 E-value=1.1e-13 Score=150.03 Aligned_cols=299 Identities=15% Similarity=0.101 Sum_probs=184.2
Q ss_pred HHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHhhccccC-CCCCCccccCCC
Q 043885 393 KHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDE-YGSMLKKANNYIKTTQVRTK-SFEDPSCWYRHE 470 (765)
Q Consensus 393 ~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~-~~~~l~kA~~~L~~~Q~~~~-~~Gd~~~~~~~~ 470 (765)
+||++.+.+.+-.- ...++..+.+.+|-|=|++.+|.-.|.... ....-++.++||.+.|+..+ +.|+|....-+.
T Consensus 2 ~~H~~y~~~~l~~l--p~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~ 79 (307)
T cd02895 2 KKHVKFFQRCLQLL--PSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLG 79 (307)
T ss_pred hHHHHHHHHHhhhC--CchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCc
Confidence 56777766654221 223556667788999999999888775430 12344788999999995321 125554211000
Q ss_pred CCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccc
Q 043885 471 FQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLN 550 (765)
Q Consensus 471 ~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~ 550 (765)
..+ .......++.-.|=.|+.+|..+.. +......++.++||.++|+.||||+......
T Consensus 80 ~~~----~~~~~~~~~l~~ty~Al~~L~lL~~--------~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~--------- 138 (307)
T cd02895 80 LPG----TASKYDTGNLAMTYFALLSLLILGD--------DLSRVDRKAILNFLSKLQLPDGSFGSVLDSE--------- 138 (307)
T ss_pred ccc----ccccCCcccHHHHHHHHHHHHHhCC--------chhhhhHHHHHHHHHHhCCCCCCccCCcCCc---------
Confidence 000 0001123556667777777766642 1111224667899999999999997532000
Q ss_pred cccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCchhHHHHHHHH
Q 043885 551 PVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGS-WGVCFTYGTWFGIKG 629 (765)
Q Consensus 551 p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~-wg~~~~YgT~~al~a 629 (765)
++ .+..-.|-.++.+|..++...+ +.+ -.++.++||.+.|+.||+|.+. ++....=.|..|+.+
T Consensus 139 ----~~-----e~d~r~ty~Av~~l~lL~~~~~----~~~--d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~as 203 (307)
T cd02895 139 ----GG-----ENDMRFCYCAVAICYMLDDWSE----EDI--DKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIAS 203 (307)
T ss_pred ----CC-----CccHHHHHHHHHHHHHhCCCcc----ccc--cHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHH
Confidence 00 0112234445555655553211 011 3678999999999999999654 222222235567777
Q ss_pred HHHcCCCCC-ChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 043885 630 LVDSGRKYE-NSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRA 708 (765)
Q Consensus 630 L~aaG~~~~-~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~ra 708 (765)
|...|.... ....+.+.++||+++|+.+||++.. +++.+++-.|.|++.+|...+... .-..++.
T Consensus 204 L~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr------------~~k~~D~cysfw~~a~L~iL~~~~--~id~~~l 269 (307)
T cd02895 204 LSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR------------PNKPADTCYSFWVGASLKLLDAFQ--LIDFEKN 269 (307)
T ss_pred HHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC------------CCCCCccchhhHHHHHHHHcCccc--ccCHHHH
Confidence 776665410 1456789999999999999999654 156788899999999998887642 2247889
Q ss_pred HHHHHhcCc-CCCCCCCCccccccCCccccccCCccchHHHHHHH
Q 043885 709 ARVLINSQM-ENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALG 752 (765)
Q Consensus 709 v~~L~~~Q~-~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg 752 (765)
.+||+++|+ .+|+|... .|..|.. |-.+|.|-||+
T Consensus 270 ~~~l~~~q~~~~GGf~~~--p~~~~D~-------~ht~~~la~Ls 305 (307)
T cd02895 270 RNYLLSTQQSLVGGFAKN--PDSHPDP-------LHSYLGLAALS 305 (307)
T ss_pred HHHHHHHcCCCCCCcCCC--CCCCCCh-------hHHHHHHHHHH
Confidence 999999875 58999754 2334433 33557777775
No 31
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.60 E-value=3.2e-16 Score=143.53 Aligned_cols=108 Identities=34% Similarity=0.469 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccc
Q 043885 594 IAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYT 673 (765)
Q Consensus 594 I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~ 673 (765)
|+++++||.+.|++||||.+.|+. ..+.|.+++.+|...+.. ...++|+||++||+++|++||||++.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~-~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~---------- 68 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGS-DVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYS---------- 68 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-T----------
T ss_pred Cccccccccccccccccccccccc-cccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCc----------
Confidence 679999999999999999988874 477888899999888865 46889999999999999999999865
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcC
Q 043885 674 NLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQME 718 (765)
Q Consensus 674 ~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~ 718 (765)
..+..+.|+.++.+|+.++... +.++++||++||+++|..
T Consensus 69 ----~~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 69 ----GGEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQLD 108 (109)
T ss_dssp ----S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH---
T ss_pred ----CCCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCC
Confidence 1244667777787777776654 345799999999998753
No 32
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.59 E-value=3.8e-13 Score=146.34 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhhheeccCC-ceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCC
Q 043885 391 AYKHHLARIKDYLWVAEDG-MKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRH 469 (765)
Q Consensus 391 ~~~~~l~~l~~~l~~~~dG-~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~ 469 (765)
...+|++.+.+.+ ..+| ......+.+.+|.+-+++.+|.-.+..+. ...+++++||.+.|..+ |+|..
T Consensus 9 ~~~kh~~yl~~~~--~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~--~~~~~~i~~l~~cq~~~---GGF~~---- 77 (316)
T PLN03201 9 VVDKHVRYIKSLE--KKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDD--VDRDEVVSWVMRCQHES---GGFGG---- 77 (316)
T ss_pred cHHHHHHHHHHhC--CCCCCccccccccchHHHHHHHHHHHHHhCCCcc--ccHHHHHHHHHHhcCCC---CCcCC----
Confidence 3678998887742 2333 22222223445567666666665554332 34589999999999864 66531
Q ss_pred CCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcc
Q 043885 470 EFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEML 549 (765)
Q Consensus 470 ~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l 549 (765)
.+ ...|+.-.|-.|+.+|..+.. ...-..++.++||.++|++||||..-..
T Consensus 78 -----~~-----~~~~h~~~Ty~al~~L~ll~~---------~~~id~~~~~~~l~s~Q~~dGgF~~~~~---------- 128 (316)
T PLN03201 78 -----NT-----GHDPHILYTLSAVQILALFDR---------LDLLDADKVASYVAGLQNEDGSFSGDEW---------- 128 (316)
T ss_pred -----CC-----CCcccHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHhcCCCCCccCCCC----------
Confidence 11 122566778888888876632 1122345689999999999999974110
Q ss_pred ccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCC-CCCchhHHHHHHH
Q 043885 550 NPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSW-GVCFTYGTWFGIK 628 (765)
Q Consensus 550 ~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~w-g~~~~YgT~~al~ 628 (765)
++ .| +--|-.++.++.+.+... . ..++++++||.+.|++||+|.+.- +....--|+.++.
T Consensus 129 ------ge--~D---~r~ty~a~a~l~LL~~~~------~--i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caia 189 (316)
T PLN03201 129 ------GE--ID---TRFSYCALCCLSLLKRLD------K--INVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVG 189 (316)
T ss_pred ------CC--cc---HHHHHHHHHHHHHhCccc------h--hHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHH
Confidence 10 01 111444455555554321 1 237899999999999999997653 2233333667777
Q ss_pred HHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 043885 629 GLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRA 708 (765)
Q Consensus 629 aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~ra 708 (765)
+|.-.|.... ....+..+||.++|..+||+.... +...+.-.|.|++.+|...+... .-..++.
T Consensus 190 aL~llg~~~~--~d~~~l~~wL~~rQ~~~GGf~grp------------~k~~D~cys~w~~a~L~ll~~~~--~~d~~~l 253 (316)
T PLN03201 190 ALAITGSLHH--VDKDLLGWWLCERQVKSGGLNGRP------------EKLPDVCYSWWVLSSLIIIDRVH--WIDKDKL 253 (316)
T ss_pred HHHHcCcccc--CCHHHHHHHHHHhCCCCCCcCCCC------------CCCCchHHHHHHHHHHHHhcccc--ccCHHHH
Confidence 7877775321 123567899999999999996541 46688999999999999887643 1235778
Q ss_pred HHHHHhcCcC-CCCCCCCccccccCCccccccCCccchHHHHHHHHH
Q 043885 709 ARVLINSQME-NGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 709 v~~L~~~Q~~-dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
.+||+++|++ .|+|.... |..|.. |-.+|-|-+|+-.
T Consensus 254 ~~~i~~~q~~~~GGf~~~p--~~~~D~-------~ht~~~l~~lsl~ 291 (316)
T PLN03201 254 AKFILDCQDDENGGISDRP--DDAVDV-------FHTFFGVAGLSLL 291 (316)
T ss_pred HHHHHHHcCCCCCCcCCCc--CCCCCh-------hHHHHHHHHHHhc
Confidence 8999999985 78886542 333433 3356777777754
No 33
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.59 E-value=1.7e-13 Score=147.68 Aligned_cols=224 Identities=14% Similarity=0.060 Sum_probs=149.7
Q ss_pred HHHHHHHHhhhheeccCCceee-cc--CCCchhHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHhhccccCCCCCCcccc
Q 043885 392 YKHHLARIKDYLWVAEDGMKMQ-AY--NGSQLWDTAFAVHAILSTNL-VDEYGSMLKKANNYIKTTQVRTKSFEDPSCWY 467 (765)
Q Consensus 392 ~~~~l~~l~~~l~~~~dG~~~q-~~--~gs~~WDTalai~AL~~ag~-~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~ 467 (765)
++.+++++..| ...||..-. +- ..+.+|-||+++.+|.+++- ..-....|++|++||.+.|..+ |.|....
T Consensus 51 l~~g~~~~~~~--q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d---G~f~~~~ 125 (292)
T cd02897 51 LRTGYQRQLTY--KHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN---GCFREVG 125 (292)
T ss_pred HHHHHHHHHhc--cCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC---CCCCCCC
Confidence 45566666665 456774321 11 15689999999999998862 1122579999999999999765 7765321
Q ss_pred CCCCCCCCCCCCC-CCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchh
Q 043885 468 RHEFQEGWPFSSL-DNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWM 546 (765)
Q Consensus 468 ~~~~~GgW~fs~~-~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~l 546 (765)
+ +-.... ...-+.++.||.++.||.... .+...+.+.+|++||.+.+.+ .
T Consensus 126 ~------~~~~~~~~~~~~~~~~TA~vl~aL~~~g--------~~~~~~~i~~a~~yL~~~~~~--------~------- 176 (292)
T cd02897 126 R------VFHKAMQGGVDDEVALTAYVLIALLEAG--------LPSERPVVEKALSCLEAALDS--------I------- 176 (292)
T ss_pred c------ccChhhcCCCCCCcchHHHHHHHHHhcC--------CccccHHHHHHHHHHHHhccc--------C-------
Confidence 1 111000 001245688999999998764 223567899999999997764 0
Q ss_pred hccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCC-----------C
Q 043885 547 EMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGS-----------W 615 (765)
Q Consensus 547 e~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~-----------w 615 (765)
.++..++.+..||...+. +. ...+-+.+.++...+..+|.|... +
T Consensus 177 ----------------~~~y~~al~a~AL~~~~~--~~------~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 232 (292)
T cd02897 177 ----------------SDPYTLALAAYALTLAGS--EK------RPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQ 232 (292)
T ss_pred ----------------CCHHHHHHHHHHHHHcCC--cc------HHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCC
Confidence 022357888888888762 21 123334455566667777777421 1
Q ss_pred CC-CchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHH
Q 043885 616 GV-CFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIE 694 (765)
Q Consensus 616 g~-~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~ 694 (765)
+. ..+-.|+++|++|..++.. ..+.+.++|+||.+.|++||||+.+ -.|++||.||..
T Consensus 233 ~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sT-------------------Qdt~~al~AL~~ 291 (292)
T cd02897 233 APSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSST-------------------QDTVVALQALAK 291 (292)
T ss_pred CCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccH-------------------HHHHHHHHHHHc
Confidence 11 1244599999999988742 4578889999999999999999753 369999999964
No 34
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.58 E-value=6.1e-13 Score=143.78 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=179.7
Q ss_pred HHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCC
Q 043885 393 KHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQ 472 (765)
Q Consensus 393 ~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~ 472 (765)
++|++.+.+.+- .....++..+.+.+|=+-+++.+|.-.|...+ ....++.++||++.|..+ |++..
T Consensus 2 ~~h~~~~~~~l~--~~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~-~~~~~~~i~~i~~~q~~~---GgF~~------- 68 (299)
T cd02893 2 EKHIKYLKKSLR--QLPSSFTSLDASRPWLLYWILHSLELLGEELD-QSYADDVISFLRRCQNPS---GGFGG------- 68 (299)
T ss_pred hHHHHHHHHHhh--cCCccccccccccHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---CCCCC-------
Confidence 578877777643 23456666778899999999999988875222 345789999999999754 55431
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccc
Q 043885 473 EGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPV 552 (765)
Q Consensus 473 GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~ 552 (765)
+ ....++.-.|=.|+.+|..+... +....-..++.++||.++|++||||..-...
T Consensus 69 -----~--~~~~~h~~~Ty~A~~~L~ll~~~------~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~------------ 123 (299)
T cd02893 69 -----G--PGQLPHLATTYAAVNALAIIGTE------EAYDVIDREALYKFLLSLKQPDGSFRMHVGG------------ 123 (299)
T ss_pred -----C--CCCCccHHHHHHHHHHHHHhCCc------hhhhHhhHHHHHHHHHHhcCCCCCeeCCCCC------------
Confidence 1 12246666677777777766420 0011122345899999999999999853111
Q ss_pred cccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchhHHHHHHHHHH
Q 043885 553 ENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWG-VCFTYGTWFGIKGLV 631 (765)
Q Consensus 553 e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg-~~~~YgT~~al~aL~ 631 (765)
+ .|-..+.|. +..+.+++.. + +..++++++||.+.|+.||++.+.-+ ....=-|+.++.+|.
T Consensus 124 ----e--~D~r~tyca---va~~~lL~~~-~-------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~ 186 (299)
T cd02893 124 ----E--VDVRGTYCA---ISVASLLNIL-T-------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALA 186 (299)
T ss_pred ----C--chHhHHHHH---HHHHHHhCCC-c-------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHH
Confidence 0 011111122 2222223221 1 23578999999999999999976433 122212556777777
Q ss_pred HcCCCCCChHHHHHHHHHHHhcccC-CCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCC-----------
Q 043885 632 DSGRKYENSRSIRKACDFLLSKQLD-SGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAH----------- 699 (765)
Q Consensus 632 aaG~~~~~~~~i~rav~~Lls~Q~~-DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~----------- 699 (765)
-.|.. +...+.+.++||+++|.+ +||+.... ++.+++-.|.|++-+|...+...
T Consensus 187 llg~~--~~~d~~~l~~wl~~~q~~~~GGf~grp------------~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~ 252 (299)
T cd02893 187 ILGKP--DKLDLESLLRWLVARQMRFEGGFQGRT------------NKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAE 252 (299)
T ss_pred HcCCc--cccCHHHHHHHHHhhcCCCCCCcCCCC------------CCCCccHHHHHHHHHHHHHHHHhccccccccccc
Confidence 77754 234578999999999998 99995431 45678889999998888776431
Q ss_pred CCcHHHHHHHHHHHh-cCcCCCCCCCCccccccCCccccccCCccchHHHHHHH
Q 043885 700 RDPTPLHRAARVLIN-SQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALG 752 (765)
Q Consensus 700 ~d~~~i~rav~~L~~-~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg 752 (765)
......+.-.+||++ +|..+|+|... .+..| ..|-..|.|-+|+
T Consensus 253 ~~~~~~~~l~~~il~~~q~~~GGf~~~--p~~~~-------D~yHT~~~l~~Ls 297 (299)
T cd02893 253 GTLFDQEALQEYILLCCQSEEGGLRDK--PGKPR-------DFYHTCYALSGLS 297 (299)
T ss_pred ccccCHHHHHHHHHHhcCCCCCCcCCC--CCCCC-------CchhHHHHHHHHh
Confidence 011235677899995 45678999643 22233 2344667777765
No 35
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.55 E-value=1.3e-15 Score=139.47 Aligned_cols=105 Identities=30% Similarity=0.572 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCcchhh
Q 043885 102 LRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLN 181 (765)
Q Consensus 102 l~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m~~ 181 (765)
|+++++||.+.|.+||+|.+..+++++.|..++.+|..++. .-..+.++++++||+++|++||||+.. +...+++
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~---~~~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~ 75 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGD---AAVDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSM 75 (109)
T ss_dssp ----------------------------------------T---S-SSBSSHHHHHHHHH---TTS--S-T--S--HHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccCC---CCcHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHH
Confidence 67899999999999999999888889999999999999982 233566899999999999999999966 5566888
Q ss_pred hHHHHHHHHHcCCCCCCCchHHHHHHHHHHhc
Q 043885 182 TVLSYVGLRLLGERMDGGDGAIEKARKWILGR 213 (765)
Q Consensus 182 Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~ 213 (765)
|+.++.+|.+.|..+++ +.++||++||++|
T Consensus 76 t~~~~~~l~~~~~~~~~--~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDD--EAVERGLEWILSH 105 (109)
T ss_dssp HHHHHHHHHHHHTT--H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Confidence 88899999999998876 8999999999987
No 36
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.48 E-value=1.1e-11 Score=134.07 Aligned_cols=246 Identities=13% Similarity=0.034 Sum_probs=147.4
Q ss_pred HHHHhhccccCCCcHHHHHHHHHHhhhheeccCCce-eeccCCCchhHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHhh
Q 043885 376 VLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMK-MQAYNGSQLWDTAFAVHAILSTNLVDEY-GSMLKKANNYIKTT 453 (765)
Q Consensus 376 ~l~ml~~~~~~p~~~~~~~~l~~l~~~l~~~~dG~~-~q~~~gs~~WDTalai~AL~~ag~~~~~-~~~l~kA~~~L~~~ 453 (765)
.++.|.+.+.+.+....++.++.|..- +.+||.. ....+.+++.-|-.|+++|...|-.+.. .-..+++++||++.
T Consensus 33 ~l~~l~lL~~~~~~~~~~~~i~~i~~~--q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~ 110 (299)
T cd02893 33 ILHSLELLGEELDQSYADDVISFLRRC--QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSL 110 (299)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHh--cCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHh
Confidence 344444433322222334455555443 3456632 2222346788888888888887743211 12245699999999
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhh----hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccc
Q 043885 454 QVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDT----TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQN 529 (765)
Q Consensus 454 Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~----TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn 529 (765)
|..+ |+| ... .. ..+|. +|.++..|+.+ ..++.+++.++||+++|+
T Consensus 111 q~~d---Ggf------------~~~--~~--~e~D~r~tycava~~~lL~~-----------~~~~~~~~~~~~l~~cQ~ 160 (299)
T cd02893 111 KQPD---GSF------------RMH--VG--GEVDVRGTYCAISVASLLNI-----------LTDELFEGVAEYILSCQT 160 (299)
T ss_pred cCCC---CCe------------eCC--CC--CCchHhHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHcCC
Confidence 9764 444 332 11 23343 24444443321 134567899999999999
Q ss_pred cCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCC-C
Q 043885 530 SSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRP-D 608 (765)
Q Consensus 530 ~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~-D 608 (765)
.||||+. .+.. -+...-|..++.+|..++.... .-+++.++||.+.|.+ +
T Consensus 161 ~dGGF~~-~p~~--------------------e~h~~yTfcavasL~llg~~~~--------~d~~~l~~wl~~~q~~~~ 211 (299)
T cd02893 161 YEGGFGG-VPGN--------------------EAHGGYTFCALAALAILGKPDK--------LDLESLLRWLVARQMRFE 211 (299)
T ss_pred CCCCcCC-CCCC--------------------CCCccHHHHHHHHHHHcCCccc--------cCHHHHHHHHHhhcCCCC
Confidence 9999984 2111 1233457777888888765311 1267899999999988 8
Q ss_pred CCCCCCCCC-CchhHHHHHHHHHHHcCCCC-----------CChHHHHHHHHHHHh-cccCCCccccccccccccccccC
Q 043885 609 GWWYGSWGV-CFTYGTWFGIKGLVDSGRKY-----------ENSRSIRKACDFLLS-KQLDSGGWGESYVSCVDRVYTNL 675 (765)
Q Consensus 609 GsW~g~wg~-~~~YgT~~al~aL~aaG~~~-----------~~~~~i~rav~~Lls-~Q~~DGGWGes~~s~~~~~Y~~l 675 (765)
|++.|+-+. ..++=|++++.+|...+..+ ..-....+..+||++ +|+.+|||...
T Consensus 212 GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~------------ 279 (299)
T cd02893 212 GGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDK------------ 279 (299)
T ss_pred CCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCC------------
Confidence 998876531 12222345555554433221 012345678899995 45678999643
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 043885 676 EGNKAHNVNTAWAMLALIE 694 (765)
Q Consensus 676 ~g~~S~~~~TAwALlAL~~ 694 (765)
++..+++.+|+++|.+|..
T Consensus 280 p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 280 PGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred CCCCCCchhHHHHHHHHhc
Confidence 2567899999999999864
No 37
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.48 E-value=2.4e-12 Score=139.65 Aligned_cols=211 Identities=20% Similarity=0.185 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhcc----ccCCCccccccCCCcchhhccccccccccccccCC
Q 043885 488 DTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQ----NSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQ 563 (765)
Q Consensus 488 D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Q----n~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~ 563 (765)
-.|=.+|.+|..+... .......-++.++||.++| ++||||+....... +. .....+.+
T Consensus 28 ~~~yf~l~~L~lL~~~------~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~--------~~---~~~~~~~~ 90 (307)
T cd02895 28 TIAFFALSGLDLLGAL------DSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGL--------PG---TASKYDTG 90 (307)
T ss_pred HHHHHHHHHHHHhCCC------ccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcc--------cc---ccccCCcc
Confidence 3455666666666421 0012344466799999999 99999975321100 00 00112234
Q ss_pred ccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCC----CCCchhHHHHHHHHHHHcCCCCCC
Q 043885 564 YVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSW----GVCFTYGTWFGIKGLVDSGRKYEN 639 (765)
Q Consensus 564 ~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~w----g~~~~YgT~~al~aL~aaG~~~~~ 639 (765)
..-.|-.++.+|..++.... .+ -.++.++||.+.|++||+|.+.. +...+-.|..|+..|.-.|.....
T Consensus 91 ~l~~ty~Al~~L~lL~~~~~-----~i--dr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~ 163 (307)
T cd02895 91 NLAMTYFALLSLLILGDDLS-----RV--DRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEE 163 (307)
T ss_pred cHHHHHHHHHHHHHhCCchh-----hh--hHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccc
Confidence 44456677778877754211 12 24788999999999999998764 455555566777777766654211
Q ss_pred hHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHhcCcC
Q 043885 640 SRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHR-DPTPLHRAARVLINSQME 718 (765)
Q Consensus 640 ~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~-d~~~i~rav~~L~~~Q~~ 718 (765)
....++.++||+++|+.||||+... +++++...|.||+.+|...+.... ....+++.++||+++|..
T Consensus 164 ~~d~~~li~~l~s~Q~~dGGF~~~~------------~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~ 231 (307)
T cd02895 164 DIDKEKLIDYIKSSQSYDGGFGQGP------------GLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVS 231 (307)
T ss_pred cccHHHHHHHHHHccCCCCCccCCC------------CCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCC
Confidence 2357899999999999999998752 567888999999999999887531 123588999999999999
Q ss_pred CCCCCCCccccccCCccc
Q 043885 719 NGDFPQQEIMGSFTRNCM 736 (765)
Q Consensus 719 dG~w~~~~~~g~f~~~~~ 736 (765)
+|+|... ++..+..||
T Consensus 232 ~GGF~gr--~~k~~D~cy 247 (307)
T cd02895 232 GTGFNGR--PNKPADTCY 247 (307)
T ss_pred CCCcCCC--CCCCCccch
Confidence 9999654 355666665
No 38
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.45 E-value=1.4e-11 Score=131.42 Aligned_cols=254 Identities=18% Similarity=0.108 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHH
Q 043885 421 WDTAFAVHAILSTNLVD-----EYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLN 495 (765)
Q Consensus 421 WDTalai~AL~~ag~~~-----~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~ 495 (765)
+-..++..-+...+... +....|++++++|.+.|..+ |+| ++-..+ ..++.-.|+.+++
T Consensus 24 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~~d---Ggf------------~~w~~~-~~~~~~~Ta~~~~ 87 (282)
T cd02891 24 APNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQRSD---GSF------------SAWGNS-DSGSTWLTAYVVK 87 (282)
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcCCC---CCc------------cccCCC-CCCchHHHHHHHH
Confidence 33334444444444432 45788999999999999865 555 322111 1456778999999
Q ss_pred HHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHH
Q 043885 496 VSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCL 575 (765)
Q Consensus 496 aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL 575 (765)
+|..+.+. + .++.+.+.++++||++.|++||+|........... ++ .+.+....|+.++.+|
T Consensus 88 ~L~~a~~~-----~-~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~---------~~---~~~~~~~~tA~al~~L 149 (282)
T cd02891 88 FLSQARKY-----I-DVDENVLARALGWLVPQQKEDGSFRELGPVIHREM---------KG---GVDDSVSLTAYVLIAL 149 (282)
T ss_pred HHHHHHHc-----C-CCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh---------cC---CcCCCcchHHHHHHHH
Confidence 99887542 3 46788999999999999999999976543221100 00 1234557899999999
Q ss_pred HhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhccc
Q 043885 576 KSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQL 655 (765)
Q Consensus 576 ~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~ 655 (765)
...+... ...+.++++||.+.... ....|+.+....+|...|.. +...+.++-|...-.
T Consensus 150 ~~~g~~~--------~~~~~~a~~~L~~~~~~---------~~~~~~~a~la~al~~~g~~----~~~~~~l~~l~~~~~ 208 (282)
T cd02891 150 AEAGKAC--------DASIEKALAYLETQLDG---------LLDPYALAILAYALALAGDS----TRADEALKKLLEAAR 208 (282)
T ss_pred HHhcccc--------hHHHHHHHHHHHHhccc---------CCChHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHhh
Confidence 8876421 35789999999987754 24578888877788877753 334555555655544
Q ss_pred CCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCcc
Q 043885 656 DSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNC 735 (765)
Q Consensus 656 ~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~ 735 (765)
..+++... .......| +....+..|+++|++....+ ++....+.++||.+.+..+|.|...
T Consensus 209 ~~~~~~~~-~~~~~~~~----~s~~~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~sT---------- 269 (282)
T cd02891 209 EKGGTAHW-SLSWPGDY----GSSLRVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLST---------- 269 (282)
T ss_pred hcCCcccc-cCCCCCCC----CchhhHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCcccH----------
Confidence 44443221 00000011 23345677889998887654 2345788999999988888888643
Q ss_pred ccccCCccchHHHHHHHHH
Q 043885 736 MISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 736 ~~~Y~~Yr~~fpl~ALg~y 754 (765)
..+++.|.||++|
T Consensus 270 ------q~t~~al~AL~~y 282 (282)
T cd02891 270 ------QDTVVALQALAAY 282 (282)
T ss_pred ------HHHHHHHHHHHhC
Confidence 4578999999876
No 39
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.44 E-value=5.3e-12 Score=132.89 Aligned_cols=219 Identities=21% Similarity=0.189 Sum_probs=151.1
Q ss_pred CCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccccccccccccc
Q 043885 482 NGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIID 561 (765)
Q Consensus 482 ~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d 561 (765)
+.-+.+-.||.+++.|..+.+. ..++.+.|.++++||++.|++||.|..-.+-. ...|..
T Consensus 22 ~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~--------------~~~~~g 81 (246)
T PF07678_consen 22 DSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLISQQQPDGSFEEDGPVI--------------HREMQG 81 (246)
T ss_dssp TSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHHHHBETTSEB--SSS-S--------------SGGGSG
T ss_pred CCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCccccCCCcc--------------ccccCC
Confidence 3457888999999999877542 45788999999999999999999996422211 111111
Q ss_pred --CCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCC
Q 043885 562 --YQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYEN 639 (765)
Q Consensus 562 --~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~ 639 (765)
...+..|+.|+.||...+...+.. ...++..|+||++||++... .....|..+.+.-||..+| .
T Consensus 82 ~~~~~~~lTA~VliAL~e~~~~~~~~-~~~~~~~i~kA~~~L~~~~~---------~~~~~Y~lAl~aYAL~la~-~--- 147 (246)
T PF07678_consen 82 GVEDDIALTAYVLIALLEAGSLCDSE-KPEYENAINKALNYLERHLD---------NIQDPYTLALVAYALALAG-D--- 147 (246)
T ss_dssp GGTHHHHHHHHHHHHHHHCHCCHTTT-HHCHHHHHHHHHHHHHHHHG---------CTSSHHHHHHHHHHHHHTT-T---
T ss_pred CCCCCeeehHHHHHHHHhhhhhcccc-chhhHHHHHHHHHHHHHhcc---------ccCCHHHHHHHHHHHHhhc-c---
Confidence 234568999999998876432211 33467899999999988721 1345888888888888887 2
Q ss_pred hHHHHHHHHHHHhcccCCCc---cccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcC
Q 043885 640 SRSIRKACDFLLSKQLDSGG---WGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQ 716 (765)
Q Consensus 640 ~~~i~rav~~Lls~Q~~DGG---WGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q 716 (765)
++...++.+-|.+....+|+ |...........+.. .+...++..|||||++++..+ +.+...+.++||+++|
T Consensus 148 ~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~-~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr 222 (246)
T PF07678_consen 148 SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWS-RGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQR 222 (246)
T ss_dssp CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT--SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHhhhhccccCcccCCccccccccccc-ccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhc
Confidence 46677888888887777765 544321111000000 012246788999999999984 3456889999999999
Q ss_pred cCCCCCCCCccccccCCccccccCCccchHHHHHHHHHH
Q 043885 717 MENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFY 755 (765)
Q Consensus 717 ~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~ 755 (765)
+.+|+|.... -.+..|.||++|.
T Consensus 223 ~~~Ggf~STQ----------------dTvvaL~AL~~Ya 245 (246)
T PF07678_consen 223 NSGGGFGSTQ----------------DTVVALQALAEYA 245 (246)
T ss_dssp TTTSSTSSHH----------------HHHHHHHHHHHHH
T ss_pred CCCCccCcHH----------------HHHHHHHHHHHHh
Confidence 9999997531 3568899999984
No 40
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.43 E-value=6.9e-12 Score=140.26 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcH
Q 043885 489 TTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECT 568 (765)
Q Consensus 489 ~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~T 568 (765)
.|=.+|.+|..+. ..++.+.-.+.++||.++|++||||+.... +.+..-.|
T Consensus 74 ~~Yw~L~sL~lLg--------~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg---------------------~~~hl~~T 124 (439)
T PLN02710 74 LCYWILHSIALLG--------ESLDDELENDTIDFLSRCQDPNGGYGGGPG---------------------QLPHLATT 124 (439)
T ss_pred HHHHHHHHHHHhC--------CcccHHHHHHHHHHHHHhcCCCcCCCCCCC---------------------CCccHHHH
Confidence 3445666666553 234555667789999999999999975221 11233346
Q ss_pred HHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCC-CC---CCchhHHHHHHHHHHHcCCCCCChHHHH
Q 043885 569 SSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGS-WG---VCFTYGTWFGIKGLVDSGRKYENSRSIR 644 (765)
Q Consensus 569 a~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~-wg---~~~~YgT~~al~aL~aaG~~~~~~~~i~ 644 (765)
-.++.+|..++.. ... ..|+ .++.++||.+.|++||++.+. ++ +.++|... ..+.-.+.. ...-++
T Consensus 125 Y~Av~~L~iLg~~-~~l--~~Id--r~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAl---ail~LL~~l--~~~~~e 194 (439)
T PLN02710 125 YAAVNTLVTIGGE-RAL--SSIN--REKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAI---SVASLLNIL--DDELVK 194 (439)
T ss_pred HHHHHHHHHcCCc-hhh--cccC--HHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHH---HHHHHhCcC--chhhHH
Confidence 6777888877642 111 0122 467889999999999999754 33 24566533 233333432 345678
Q ss_pred HHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCC
Q 043885 645 KACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQ 724 (765)
Q Consensus 645 rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~ 724 (765)
+.++||+++|+.|||++.. ++..+|.-.|.||+.+|...|..+. -.+++.++||+++|..+|+|..
T Consensus 195 ~~~~~I~scQ~~dGGF~g~------------P~~EaH~gyTfcavAsL~LLg~l~~--id~~~l~~WL~~rQ~~~GGF~G 260 (439)
T PLN02710 195 GVGDYILSCQTYEGGIGGE------------PGAEAHGGYTFCGLAAMILINEVDR--LDLPSLINWVVFRQGVEGGFQG 260 (439)
T ss_pred HHHHHHHHhCCCCCCCCCC------------CCCCCchHHHHHHHHHHHHcCCccc--cCHHHHHHHHHHhcCcCCCcCC
Confidence 9999999999999999865 2678999999999999999886532 2478899999999999999976
Q ss_pred CccccccCCccccccCCccchHHHHHHHHH
Q 043885 725 QEIMGSFTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 725 ~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
. ++..+..|| .+|-+-+|.--
T Consensus 261 R--~nKl~D~CY-------SfW~~a~L~lL 281 (439)
T PLN02710 261 R--TNKLVDGCY-------SFWQGGVFALL 281 (439)
T ss_pred C--CCCCCCchh-------hHHHHHHHHHH
Confidence 5 356778886 35555554443
No 41
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.1e-12 Score=129.26 Aligned_cols=173 Identities=25% Similarity=0.309 Sum_probs=128.6
Q ss_pred HHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHH
Q 043885 517 LFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAK 596 (765)
Q Consensus 517 l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~r 596 (765)
-++-|.|++++|+.+|||+.++.... ..--|-.+++-|+.+... +.+ -..+
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Ghd~---------------------hll~TlsAvQiL~~ydsi-~~~-------d~d~ 118 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGHDP---------------------HLLYTLSAVQILALYDSI-NVL-------DRDK 118 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCCCh---------------------HHHHHHHHHHHHHHHccc-ccc-------cHHH
Confidence 35668999999999999997654321 122477888989888643 211 1456
Q ss_pred HHHHHHHhcCCCCCCCCC-CCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccC
Q 043885 597 GANFIESIQRPDGWWYGS-WGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNL 675 (765)
Q Consensus 597 Av~~L~~~Q~~DGsW~g~-wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l 675 (765)
-+.|+...|++|||+.|+ ||.-.|-=+..++.+|.-.|+- +...+.+||+|++++-|-|||||-.
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~------------ 184 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCR------------ 184 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCC------------
Confidence 789999999999999885 8853322233455566666654 3567899999999999999999975
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccc
Q 043885 676 EGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCM 736 (765)
Q Consensus 676 ~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~ 736 (765)
+|.+||.-|-...+-||..+|..+. -..++-..||..+|.+.|+-.... --.|..||
T Consensus 185 pGaESHagqifcCvgaLai~~~L~~--vd~d~lgwwlceRQ~~sGGLNGRp--eKlpDVCY 241 (329)
T KOG0366|consen 185 PGAESHAGQIFCCVGALAITGKLHL--VDRDLLGWWLCERQLPSGGLNGRP--EKLPDVCY 241 (329)
T ss_pred CCcccccceehhhHHHHHHccchhh--cCHHHHHHHHHhccCCCCCCCCCc--ccCcchhh
Confidence 2788999999999999999987752 123567789999999999876542 23788886
No 42
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.38 E-value=4e-12 Score=134.36 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=110.5
Q ss_pred hhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccC
Q 043885 487 TDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVE 566 (765)
Q Consensus 487 ~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d 566 (765)
-+-|...|.-|+.+-+. .+++...+++.||++|||++|++||||+.|.+.++ .++++|. |.| +
T Consensus 43 N~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~IT----fND--------~ 105 (290)
T TIGR02474 43 NGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAIT----YND--------N 105 (290)
T ss_pred CccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Ccccccc----cCc--------H
Confidence 34677788877776432 35678899999999999999999999999998776 5666663 433 3
Q ss_pred cHHHHHHHHHhccCc------CCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhH------------------
Q 043885 567 CTSSTIQCLKSFTKH------YPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYG------------------ 622 (765)
Q Consensus 567 ~Ta~~l~aL~~~~~~------~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~Yg------------------ 622 (765)
.+..||++|..+.+. .+..+.+++..+|+||++||++.|.++|+|++.|+++|.--
T Consensus 106 am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ 185 (290)
T TIGR02474 106 AMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSS 185 (290)
T ss_pred HHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccc
Confidence 355788888654321 12223467889999999999999999999999999876421
Q ss_pred -HHHHHHHHHHcC-CCCCChHHHHHHHHHHHhcccCCC
Q 043885 623 -TWFGIKGLVDSG-RKYENSRSIRKACDFLLSKQLDSG 658 (765)
Q Consensus 623 -T~~al~aL~aaG-~~~~~~~~i~rav~~Lls~Q~~DG 658 (765)
|.-+|.-|...- .+.+.-.+|..|++||.++..++=
T Consensus 186 ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~ 223 (290)
T TIGR02474 186 ESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGY 223 (290)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCc
Confidence 333343343322 111235688899999999876653
No 43
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.35 E-value=1.9e-10 Score=128.82 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=149.8
Q ss_pred HHHHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCC
Q 043885 391 AYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHE 470 (765)
Q Consensus 391 ~~~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~ 470 (765)
...+|++.+...+- .-+..++..+.+.+|=+=+++.+|.-.|.+-+ ...-++.++||.+.|..+ |+|.
T Consensus 45 ~~~~H~~yl~~~l~--~lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~-~~~~~~ii~~l~~cQ~~d---GGFg------ 112 (439)
T PLN02710 45 WREKHLEYLTRGLR--QLGPSFSVLDANRPWLCYWILHSIALLGESLD-DELENDTIDFLSRCQDPN---GGYG------ 112 (439)
T ss_pred cHHHHHHHHHHHhh--cCChhhhhhhhhhHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---cCCC------
Confidence 36788888776643 23445556667889999999999887775311 234578999999999864 6543
Q ss_pred CCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccc
Q 043885 471 FQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLN 550 (765)
Q Consensus 471 ~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~ 550 (765)
|-+ ...|+.-.|=.|+.+|..+.... .=..++ ..+.++||+++|++||||......
T Consensus 113 ---g~p-----g~~~hl~~TY~Av~~L~iLg~~~---~l~~Id---r~~l~~fl~s~q~~dGgF~~~~~g---------- 168 (439)
T PLN02710 113 ---GGP-----GQLPHLATTYAAVNTLVTIGGER---ALSSIN---REKLYTFLLRMKDPSGGFRMHDGG---------- 168 (439)
T ss_pred ---CCC-----CCCccHHHHHHHHHHHHHcCCch---hhcccC---HHHHHHHHHHcCCCCCCcccCCCC----------
Confidence 111 12355566777777776664210 001122 345689999999999999752211
Q ss_pred cccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchhHHHHHHHH
Q 043885 551 PVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWG-VCFTYGTWFGIKG 629 (765)
Q Consensus 551 p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg-~~~~YgT~~al~a 629 (765)
+. | +..|-.++..+.+++...+ .-+++.++||.+.|+.||++.+.-+ ...+--|++++.+
T Consensus 169 ------E~--D---~R~tYcAlail~LL~~l~~--------~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAs 229 (439)
T PLN02710 169 ------EM--D---VRACYTAISVASLLNILDD--------ELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAA 229 (439)
T ss_pred ------CC--C---cCCcHHHHHHHHHhCcCch--------hhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHH
Confidence 00 1 1122233333444433211 2478999999999999999987533 2233335567777
Q ss_pred HHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhC
Q 043885 630 LVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAG 696 (765)
Q Consensus 630 L~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG 696 (765)
|.-.|.. +.-.+.+.++||+++|+.+||++... ++..++-.|.|++-+|...+
T Consensus 230 L~LLg~l--~~id~~~l~~WL~~rQ~~~GGF~GR~------------nKl~D~CYSfW~~a~L~lL~ 282 (439)
T PLN02710 230 MILINEV--DRLDLPSLINWVVFRQGVEGGFQGRT------------NKLVDGCYSFWQGGVFALLQ 282 (439)
T ss_pred HHHcCCc--cccCHHHHHHHHHHhcCcCCCcCCCC------------CCCCCchhhHHHHHHHHHHH
Confidence 7766654 23346789999999999999996542 34466677788776665554
No 44
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.14 E-value=3e-10 Score=121.17 Aligned_cols=124 Identities=24% Similarity=0.317 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCCC---CchhHHHHHHHHHHHcCCC-CCChHHHHHHHHHHHhcccCCCccccc
Q 043885 588 REIEEFIAKGANFIESIQRPDGWWYGSWGV---CFTYGTWFGIKGLVDSGRK-YENSRSIRKACDFLLSKQLDSGGWGES 663 (765)
Q Consensus 588 ~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~---~~~YgT~~al~aL~aaG~~-~~~~~~i~rav~~Lls~Q~~DGGWGes 663 (765)
.+++..|++|+++|.+.|++|||| |-|+. ..++.|++++.+|..++.. ..+++.++||++||+++|++||+|.+.
T Consensus 45 ~~~~~~i~~~~~~l~~~Q~~dGgf-~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~ 123 (282)
T cd02891 45 EKALEYIRKGYQRLLTYQRSDGSF-SAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFREL 123 (282)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCc-cccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCC
Confidence 467889999999999999999998 66754 3788999999999866432 135789999999999999999999887
Q ss_pred cccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCc
Q 043885 664 YVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQM 717 (765)
Q Consensus 664 ~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~ 717 (765)
...+..+. .+ +..+....||+|+.+|..+|... +.++.++++||.++..
T Consensus 124 ~~~~~~~~-~~--~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 124 GPVIHREM-KG--GVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLD 172 (282)
T ss_pred CCccCHhh-cC--CcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcc
Confidence 54332211 01 23455678999999999998753 4579999999998665
No 45
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.6e-09 Score=112.13 Aligned_cols=176 Identities=23% Similarity=0.233 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHH
Q 043885 516 RLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIA 595 (765)
Q Consensus 516 ~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~ 595 (765)
.-++.+-+++++++++|||+.+..... ....|-.+|+.|.+....+- ...|+
T Consensus 76 ~~er~i~~v~~~~~~~G~f~~~~g~~~---------------------hL~sT~~Ai~~L~~~d~~~~-------~~~id 127 (342)
T COG5029 76 DKERKISFVLGCVGPSGGFGGGPGQDS---------------------HLASTVFAIQSLAMLDSLDV-------LSRID 127 (342)
T ss_pred hhhhhheeeeeeecCCCCcCCCCccch---------------------hHHHHHHHHHHHHHhccccc-------cchhh
Confidence 446678899999999999986543221 12347778899988764311 11233
Q ss_pred --HHHHHHHHhcCCCCCCCCC-CCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcccccccccccccc
Q 043885 596 --KGANFIESIQRPDGWWYGS-WGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVY 672 (765)
Q Consensus 596 --rAv~~L~~~Q~~DGsW~g~-wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y 672 (765)
+-.+||...|+|||++.+. +|...+-....|+..|.-.|.- +.+-..-+++||.++||=|||+|-..
T Consensus 128 r~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~--~~~~~e~~vdyl~kCqnyeGGFg~~p-------- 197 (342)
T COG5029 128 RDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDL--DKELFEGAVDYLKKCQNYEGGFGLCP-------- 197 (342)
T ss_pred HHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHhhccCCcccCCC--------
Confidence 5679999999999999764 5533222222333333344532 45667789999999999999998651
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccc
Q 043885 673 TNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCM 736 (765)
Q Consensus 673 ~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~ 736 (765)
+.+||.-+|..||.+|...+..+.-. .+++-+.||..+|.+.|++...+ --++..||
T Consensus 198 ----~aEaHag~tFcalaalalL~~Ld~ls-~~E~l~~Wl~~RQ~ssgGl~GR~--nKl~D~CY 254 (342)
T COG5029 198 ----YAEAHAGYTFCALAALALLGKLDKLS-DVEKLIRWLAERQLSSGGLNGRS--NKLVDTCY 254 (342)
T ss_pred ----chhhccchHHHHHHHHHHHhcccccc-hHHHHHHHHHHcccccCCcCCCc--ccCccchh
Confidence 45789999999999999888765322 28999999999999999887653 34778886
No 46
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-08 Score=105.21 Aligned_cols=210 Identities=18% Similarity=0.197 Sum_probs=139.4
Q ss_pred CCchhHHHHHHHHHHHcCCCCcchHHHH--HHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHH
Q 043885 417 GSQLWDTAFAVHAILSTNLVDEYGSMLK--KANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGL 494 (765)
Q Consensus 417 gs~~WDTalai~AL~~ag~~~~~~~~l~--kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL 494 (765)
.+++=.|-+||++|+-.+-. ++-..++ ...+||...|..+ |.++.. .| |-.|.|. +-
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~-~~~~~idr~~l~~fi~~lk~pd---GsF~~~-------~~-------gevDtr~---~Y 159 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSL-DVLSRIDRDSLASFISGLKNPD---GSFRSD-------LE-------GEVDTRF---LY 159 (342)
T ss_pred chhHHHHHHHHHHHHHhccc-cccchhhHHHHHHHHHhccCCC---Cceecc-------cC-------CcchHHH---HH
Confidence 35677899999999877522 1122333 5789999999865 665431 12 2233343 22
Q ss_pred HHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHH
Q 043885 495 NVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQC 574 (765)
Q Consensus 495 ~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~a 574 (765)
.|+..++- .| ..+.+-.+-+|+||+++||=||||+..... | +...-|.-++.+
T Consensus 160 ~al~ilsl-----lg-~~~~~~~e~~vdyl~kCqnyeGGFg~~p~a------------E---------aHag~tFcalaa 212 (342)
T COG5029 160 IALSILSL-----LG-DLDKELFEGAVDYLKKCQNYEGGFGLCPYA------------E---------AHAGYTFCALAA 212 (342)
T ss_pred HHHHHHHH-----Hh-hcchhhhHHHHHHHHHhhccCCcccCCCch------------h---------hccchHHHHHHH
Confidence 22222221 12 245667778899999999999999864321 1 133457777888
Q ss_pred HHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCC----CCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 043885 575 LKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWG----VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFL 650 (765)
Q Consensus 575 L~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg----~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~L 650 (765)
|+.+++..+- ..+++-+.||...|-+.|++.|+-. +||. +|++..|+-.|.. .--.-.+-.+||
T Consensus 213 lalL~~Ld~l-------s~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs---~WvlsSl~il~~~--~~in~e~L~~yi 280 (342)
T COG5029 213 LALLGKLDKL-------SDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYS---FWVLSSLAILGKL--DFINTEELTDYI 280 (342)
T ss_pred HHHHhccccc-------chHHHHHHHHHHcccccCCcCCCcccCccchhh---hhhcchHHhcchh--hhcCHHHHHHHH
Confidence 8888765332 1278889999999999999988743 4554 4666666655532 112234568899
Q ss_pred HhcccC-CCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCC
Q 043885 651 LSKQLD-SGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQA 698 (765)
Q Consensus 651 ls~Q~~-DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~ 698 (765)
+.+|.+ .||+... +|+.+++++|+++|.||...+..
T Consensus 281 L~c~q~~sGGfsdr------------p~~~~D~yHt~~~lagLsl~~~k 317 (342)
T COG5029 281 LDCQQETSGGFSDR------------PGEEPDVYHTCFGLAGLSLIEYK 317 (342)
T ss_pred HhhcccCCCCCCCC------------CcccchHHHHHHHHHHHHHhccC
Confidence 999988 7998654 27889999999999999887654
No 47
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.93 E-value=3.9e-08 Score=103.64 Aligned_cols=222 Identities=18% Similarity=0.113 Sum_probs=137.6
Q ss_pred HHHHHhhhheeccCCce--eeccCCCchhHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHhhccccCCCCCCccccCCCC
Q 043885 395 HLARIKDYLWVAEDGMK--MQAYNGSQLWDTAFAVHAILSTNLVDE-YGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEF 471 (765)
Q Consensus 395 ~l~~l~~~l~~~~dG~~--~q~~~gs~~WDTalai~AL~~ag~~~~-~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~ 471 (765)
+-+|+..| ...||.. ...-..+.+|-|||++..|..+.---. ....|.++++||.+.|..+ |.|....
T Consensus 2 GYqr~L~y--~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~d---G~F~e~~---- 72 (246)
T PF07678_consen 2 GYQRQLSY--RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPD---GSFEEDG---- 72 (246)
T ss_dssp HHHHHHTT--B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETT---SEB--SS----
T ss_pred chHHHhcC--CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---CccccCC----
Confidence 44566666 3567732 212225789999999999998744322 2578999999999999876 6654321
Q ss_pred CCCCCCCCCCCC--CCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcc
Q 043885 472 QEGWPFSSLDNG--WIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEML 549 (765)
Q Consensus 472 ~GgW~fs~~~~~--~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l 549 (765)
+-+...-.+ ..++..||.++.||+........ ..+.....+.+|++||.+... + ..
T Consensus 73 ---~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~--~~~~~~~~i~kA~~~L~~~~~-~--------~~-------- 130 (246)
T PF07678_consen 73 ---PVIHREMQGGVEDDIALTAYVLIALLEAGSLCDS--EKPEYENAINKALNYLERHLD-N--------IQ-------- 130 (246)
T ss_dssp ---S-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTT--THHCHHHHHHHHHHHHHHHHG-C--------TS--------
T ss_pred ---CccccccCCCCCCCeeehHHHHHHHHhhhhhccc--cchhhHHHHHHHHHHHHHhcc-c--------cC--------
Confidence 111111111 24567899999999987532211 123467899999999976511 0 00
Q ss_pred ccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCC---CCCCC-----------
Q 043885 550 NPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGW---WYGSW----------- 615 (765)
Q Consensus 550 ~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGs---W~g~w----------- 615 (765)
.+...+.+--||.+.++. +...++.+-|.+....+|+ |...-
T Consensus 131 --------------~~Y~lAl~aYAL~la~~~----------~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~ 186 (246)
T PF07678_consen 131 --------------DPYTLALVAYALALAGDS----------PQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSR 186 (246)
T ss_dssp --------------SHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-
T ss_pred --------------CHHHHHHHHHHHHhhccc----------chHHHHHHHHHHhhhhccccCcccCCcccccccccccc
Confidence 011234444556665421 3455666667666554432 32110
Q ss_pred C-CCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHH
Q 043885 616 G-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIE 694 (765)
Q Consensus 616 g-~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~ 694 (765)
+ ...+-.|+++|.++...+ +.....++++||.+.|+..|||+.+ -.|..||.||..
T Consensus 187 ~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~~~Ggf~ST-------------------QdTvvaL~AL~~ 243 (246)
T PF07678_consen 187 GSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRNSGGGFGST-------------------QDTVVALQALAE 243 (246)
T ss_dssp SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTTTTSSTSSH-------------------HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcCCCCccCcH-------------------HHHHHHHHHHHH
Confidence 0 011346899999998873 4678889999999999999999643 369999999975
No 48
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.87 E-value=2.8e-08 Score=112.59 Aligned_cols=221 Identities=18% Similarity=0.182 Sum_probs=143.1
Q ss_pred CChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccc------------cCCCccccccCCCcchhhccccc
Q 043885 485 IATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQN------------SSGGVASYERTRSYAWMEMLNPV 552 (765)
Q Consensus 485 pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn------------~dGGw~~~e~~~~~~~le~l~p~ 552 (765)
+++| |+.+.+++...+..+. ++ .++.++..||+..|- .-|||+.+
T Consensus 199 q~wD-~~f~~~~~~~~g~~~~-----~~--~aiaka~~~L~~kq~~~~~~~~~~~~~~~g~W~f~--------------- 255 (517)
T COG1657 199 QVWD-GGFIRRALLVAGLAET-----PI--PAIAKALMFLLDKQVLKYADWAVKRKFSPGGWGFS--------------- 255 (517)
T ss_pred cccc-chhhhhhhhhcCcccc-----ch--HhHHhhhhhhHHHHHHHhhccccccccCCCcccee---------------
Confidence 4544 7888888765443221 11 567777777766654 34666532
Q ss_pred cccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCC-------CC------C---
Q 043885 553 ENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYG-------SW------G--- 616 (765)
Q Consensus 553 e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g-------~w------g--- 616 (765)
.+...++.+|+|+.++.++...... +.+.++++|+..+|+..|+|.. .| +
T Consensus 256 ----~~~~~ypd~d~T~~~~~al~~~~~~----------~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~ 321 (517)
T COG1657 256 ----NINTGYPDADDTAGVVRALIGVQSL----------PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK 321 (517)
T ss_pred ----ecccCCCCchhhhHHHHHHHhhcch----------hhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc
Confidence 3333477899999999999877532 4567799999999999998831 11 0
Q ss_pred ----CCchhHHHHHHHHHHHcCCCCC--ChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHH
Q 043885 617 ----VCFTYGTWFGIKGLVDSGRKYE--NSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAML 690 (765)
Q Consensus 617 ----~~~~YgT~~al~aL~aaG~~~~--~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALl 690 (765)
.++.-+|..++.+|.+...-.+ ....|++|++||++.|++||.|-..+..| .+..|+.|+-
T Consensus 322 ~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~-------------~iY~~s~a~~ 388 (517)
T COG1657 322 AMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGVC-------------YIYGTSGALS 388 (517)
T ss_pred ccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEEEE-------------EEEehhhhhh
Confidence 1112234444445544322110 15679999999999999999995544333 2456889999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccccCCccccccCCccchHHHHHHHHHHHh
Q 043885 691 ALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNR 757 (765)
Q Consensus 691 AL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~ 757 (765)
+|...|..+..+..+.+++.||...|+++|+|.+....- +...|-.=..=--.++.|||..+-+.
T Consensus 389 ~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~--~~~~~~~t~~sl~~~~~wal~~~~~a 453 (517)
T COG1657 389 ALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAI--SDPVYTGTESSLLVQTNWALIALLTA 453 (517)
T ss_pred hhhccCccccchHHHHHHHHHhhhccccCCCcccccccc--cccccccccchhhcchhHHHHHHHHh
Confidence 999999876555689999999999999999998753221 11111100111134678998887553
No 49
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.76 E-value=1.2e-07 Score=100.73 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=96.4
Q ss_pred cHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC------Cchh---HHHHHHHHHHHc--CC
Q 043885 567 CTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGV------CFTY---GTWFGIKGLVDS--GR 635 (765)
Q Consensus 567 ~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~------~~~Y---gT~~al~aL~aa--G~ 635 (765)
.|...|..|+.+-+. ...+.+++++.||++||++.|.++|+|.-.+.. ..|| ++.-++..|..+ +.
T Consensus 45 aT~~e~~fLa~~y~~---t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~ 121 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQ---EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGK 121 (290)
T ss_pred cHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhcc
Confidence 466667777665332 223457899999999999999999999755432 1233 356677777432 22
Q ss_pred C----------CCChHHHHHHHHHHHhcccCCCcc-ccccccccccccccCCC----CCCcH-HHHHHHHHHHHHhCCCC
Q 043885 636 K----------YENSRSIRKACDFLLSKQLDSGGW-GESYVSCVDRVYTNLEG----NKAHN-VNTAWAMLALIEAGQAH 699 (765)
Q Consensus 636 ~----------~~~~~~i~rav~~Lls~Q~~DGGW-Ges~~s~~~~~Y~~l~g----~~S~~-~~TAwALlAL~~aG~~~ 699 (765)
. .....+++||++||++.|-++||| +..|..+....+.|... -+|-. ..|+-.|..|+....+.
T Consensus 122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 201 (290)
T TIGR02474 122 DPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPS 201 (290)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCC
Confidence 1 013679999999999999999877 33333333334444111 12322 34566666777664332
Q ss_pred -CCcHHHHHHHHHHHhcCcCCCCC
Q 043885 700 -RDPTPLHRAARVLINSQMENGDF 722 (765)
Q Consensus 700 -~d~~~i~rav~~L~~~Q~~dG~w 722 (765)
+-.++|+.|++||.+...++=.|
T Consensus 202 ~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 202 AEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred HHHHHHHHHHHHHHHHCCCCCcee
Confidence 11248999999999988765444
No 50
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.3e-07 Score=93.56 Aligned_cols=294 Identities=19% Similarity=0.233 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHH-HHHHHHHHHhhccccCCCCCCc-ccc
Q 043885 390 EAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSM-LKKANNYIKTTQVRTKSFEDPS-CWY 467 (765)
Q Consensus 390 ~~~~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~-l~kA~~~L~~~Q~~~~~~Gd~~-~~~ 467 (765)
-..+||+..+++.+-+- .++++.-.+=-++++..|+.-.++-+..+.. =+.-++||.+.|+.....+.-+ .-+
T Consensus 11 ~~~~kH~~ff~RhL~ll-----P~~y~shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF 85 (347)
T KOG0367|consen 11 FERKKHIKFFERHLQLL-----PSPYQSHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGF 85 (347)
T ss_pred hhHHHHHHHHHHHHHhC-----CCcccccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeee
Confidence 36789999888876442 2333222222355555555544333221111 1335789999999752111111 113
Q ss_pred CCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhh
Q 043885 468 RHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWME 547 (765)
Q Consensus 468 ~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le 547 (765)
+....+.-|+++....+|..-.|=.+|.+|.-++..- ..++.++| ++++..+|.+||.|-+-....
T Consensus 86 ~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddL-----srlDrksi---l~~v~~~Q~~dGsF~~~~~GS------ 151 (347)
T KOG0367|consen 86 RGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDL-----SRLDRKSI---LRFVSACQRPDGSFVSINVGS------ 151 (347)
T ss_pred eeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchH-----hhhhHHHH---HHHHHHhcCCCCceeecCCCC------
Confidence 3444456667664555676555555555555443200 01233333 567778999999996432221
Q ss_pred ccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCC-CCCchhHHHHH
Q 043885 548 MLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSW-GVCFTYGTWFG 626 (765)
Q Consensus 548 ~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~w-g~~~~YgT~~a 626 (765)
| .|-..+.|.+.+.-.|..+... + .++++.||.+.|+=||++.-.- +...-=.|..|
T Consensus 152 -----e------~DmRFvYcA~aI~ymLd~~s~i---------D--~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCA 209 (347)
T KOG0367|consen 152 -----E------SDMRFVYCAVAICYMLDFWSGI---------D--KEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCA 209 (347)
T ss_pred -----c------hhhHHHHHHHHHHHHhcccccc---------C--HHHHHHHHHHhhccccccccCCCCCCCcchhHHH
Confidence 1 1222344544443444323211 1 4689999999999999985322 22222245566
Q ss_pred HHHHHHcCCC----CCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHH---HHHHHhCCCC
Q 043885 627 IKGLVDSGRK----YENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAM---LALIEAGQAH 699 (765)
Q Consensus 627 l~aL~aaG~~----~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwAL---lAL~~aG~~~ 699 (765)
+.+|.-.|+- ..+...+.|-++||+.+|..+||+... ..-++-|.||. ..|...+.
T Consensus 210 lAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR---------------~NKp~DTCYaFWigasLklL~~-- 272 (347)
T KOG0367|consen 210 LASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGR---------------TNKPVDTCYAFWIGASLKLLDA-- 272 (347)
T ss_pred HHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCC---------------CCCCchhHHHHHHHHHHHHccc--
Confidence 6666655543 113344899999999999999999432 22345565554 44444332
Q ss_pred CCc-HHHHHHHHHHHhcCcCC-CC---CCCCccccccCCccccccCCccchHHHHHHHHH
Q 043885 700 RDP-TPLHRAARVLINSQMEN-GD---FPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754 (765)
Q Consensus 700 ~d~-~~i~rav~~L~~~Q~~d-G~---w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y 754 (765)
++ ..-++-.+||+.+|..- |+ ||++ +|.. |-.+|-+-||+--
T Consensus 273 -~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~-----~pD~-------~HsylG~~alal~ 319 (347)
T KOG0367|consen 273 -DWLIDKQVLRKFLLSTQDKLIGGFSKWPEE-----DPDL-------LHSYLGLAALALL 319 (347)
T ss_pred -hHhhhHHHHHHHHHHhhhhhcCcccCCCcc-----CchH-------HHHHHHHHHHHHh
Confidence 22 12445678999999876 77 4553 3332 3345666676643
No 51
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.6e-07 Score=91.39 Aligned_cols=218 Identities=22% Similarity=0.230 Sum_probs=139.7
Q ss_pred ccCCce-eeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCC
Q 043885 406 AEDGMK-MQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGW 484 (765)
Q Consensus 406 ~~dG~~-~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~ 484 (765)
.++|.. ..+-+.+++=-|--|+|-|+--+--+. -...|-..|+...|..+ |.+. ...|
T Consensus 80 ~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~--~d~d~v~~yi~gLq~ed---GsF~----------------gD~w 138 (329)
T KOG0366|consen 80 HEDGGFAGCPGHDPHLLYTLSAVQILALYDSINV--LDRDKVASYIKGLQQED---GSFS----------------GDIW 138 (329)
T ss_pred cCCCCcCCCCCCChHHHHHHHHHHHHHHHccccc--ccHHHHHHHHHhhcCcC---Cccc----------------CCcc
Confidence 455532 222234566667777777765542211 11355678999999875 5532 1234
Q ss_pred CChhh--hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccC
Q 043885 485 IATDT--TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDY 562 (765)
Q Consensus 485 pd~D~--TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~ 562 (765)
-.+|. +--|+.+|..+++ ++.-.+++||+|++++-|-||||+.-....+
T Consensus 139 GEvDTRfs~~av~~L~lLg~---------ld~~nve~aVd~~~~CyN~DGGFG~~pGaES-------------------- 189 (329)
T KOG0366|consen 139 GEVDTRFSYCAVACLALLGK---------LDTINVEKAVDFVLSCYNFDGGFGCRPGAES-------------------- 189 (329)
T ss_pred cccchhhhHHHHHHHHHHhh---------HHHhhHHHHHHHHHhhcccCCCcCCCCCccc--------------------
Confidence 34442 2233444444443 3456789999999999999999986432211
Q ss_pred CccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCC----CCchhHHHHHHHHHHHcCCCCC
Q 043885 563 QYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWG----VCFTYGTWFGIKGLVDSGRKYE 638 (765)
Q Consensus 563 ~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg----~~~~YgT~~al~aL~aaG~~~~ 638 (765)
.+.---.|+-||+..++.+- ++ -++--.||...|-+.|+--|+-. +|| .|+++..|+-.|+-.
T Consensus 190 -HagqifcCvgaLai~~~L~~------vd--~d~lgwwlceRQ~~sGGLNGRpeKlpDVCY---SwWvlsSL~iigrl~- 256 (329)
T KOG0366|consen 190 -HAGQIFCCVGALAITGKLHL------VD--RDLLGWWLCERQLPSGGLNGRPEKLPDVCY---SWWVLSSLAIIGRLH- 256 (329)
T ss_pred -ccceehhhHHHHHHccchhh------cC--HHHHHHHHHhccCCCCCCCCCcccCcchhh---HHHHHhHHHHhhhhh-
Confidence 11112234556766665421 11 24556799999999998877632 454 679999999888752
Q ss_pred ChHHHHHHHHHHHhccc-CCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCC
Q 043885 639 NSRSIRKACDFLLSKQL-DSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAH 699 (765)
Q Consensus 639 ~~~~i~rav~~Lls~Q~-~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~ 699 (765)
--.-.+-.+|++++|. +.||+... +|+..++.+|-+++.+|...|.+.
T Consensus 257 -wId~ekL~~FIl~cQd~~~GGfsDR------------pgd~~D~fHt~FgiAGLSLlg~~~ 305 (329)
T KOG0366|consen 257 -WIDREKLTKFILACQDEETGGFSDR------------PGDEVDIFHTLFGIAGLSLLGYPG 305 (329)
T ss_pred -hccHHHHHHHHHhcCCCCCCCcCCC------------CCCcccHHHHHHHHhhHhhhCCCC
Confidence 2223467899999998 67999654 267789999999999999988763
No 52
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.4e-06 Score=92.61 Aligned_cols=170 Identities=21% Similarity=0.219 Sum_probs=117.6
Q ss_pred CCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchh
Q 043885 509 GEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRR 588 (765)
Q Consensus 509 g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~ 588 (765)
++.++++..++++++|..+|.+.|||+. +++-+.++ .-|-.++.+|...+... .+
T Consensus 114 ~~~~dd~v~~~~i~fL~~c~~PeGGfgG-----GPGQl~HL----------------A~TYAAVnaL~~~~~e~-A~--- 168 (423)
T KOG0365|consen 114 DEWLDDDVKENAIDFLFTCQGPEGGFGG-----GPGQLPHL----------------APTYAAVNALCLCGSED-AY--- 168 (423)
T ss_pred cCcCCHHHHHHHHHHHHhcCCCCCCCCC-----CCccchhh----------------hHHHHHHHHHHhcCcHH-HH---
Confidence 4578899999999999999999999863 22222333 34777888888876431 11
Q ss_pred HHHHHH--HHHHHHHHHhcCCCCCCCC----CCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcccc
Q 043885 589 EIEEFI--AKGANFIESIQRPDGWWYG----SWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGE 662 (765)
Q Consensus 589 ~i~~~I--~rAv~~L~~~Q~~DGsW~g----~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGe 662 (765)
..| .+-..||.+..++||||.- .-.+-..|+. ..+..| .+.. .++--+--.+||.++|+-.||+|.
T Consensus 169 ---~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA-~svasl--lni~--~deL~eG~~~wi~~CQtyEGG~GG 240 (423)
T KOG0365|consen 169 ---SSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCA-LSVASL--LNIP--MDELFEGTLDWIASCQTYEGGFGG 240 (423)
T ss_pred ---HHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHH-HHHHHH--HCCC--cHHHHHHHHHHHHhcccccCCcCC
Confidence 233 3467999999999999962 2223345532 222333 3444 234455568999999999999986
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCc-CCCCCCCC
Q 043885 663 SYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQM-ENGDFPQQ 725 (765)
Q Consensus 663 s~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~-~dG~w~~~ 725 (765)
.. |.+.|---|..|+.||+..+..+ .-.+++-++|..++|+ ..|+|-..
T Consensus 241 ~P------------~~EAHGGYTFCalAalalLn~~d--~ln~~~Ll~W~~~RQm~~E~GFqGR 290 (423)
T KOG0365|consen 241 EP------------GVEAHGGYTFCALAALALLNEMD--QLNLEKLLEWAVRRQMRFEGGFQGR 290 (423)
T ss_pred Cc------------cccccCCeeHHHHHHHHHHhhhh--hhCHHHHHHHHHHhhhhhhcccccc
Confidence 52 34556667888998888877653 3347889999999998 67887543
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.4e-06 Score=86.80 Aligned_cols=207 Identities=16% Similarity=0.249 Sum_probs=126.5
Q ss_pred HHHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCC
Q 043885 392 YKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEF 471 (765)
Q Consensus 392 ~~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~ 471 (765)
.++|+..+..++-.-.+- +..-+.|..|-.=+++.+|.-.|..-+ +...+++++||...|..+ |++.
T Consensus 74 r~kH~~YL~~~Lr~Lp~~--~~~LDASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe---GGfg------- 140 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQ--YTCLDASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE---GGFG------- 140 (423)
T ss_pred HHHHHHHHHHHHHhCCCc--ccccccCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---CCCC-------
Confidence 467888887776543322 223456888999899888877664323 578999999999999765 5542
Q ss_pred CCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHH--HHHHHHhccccCCCccccccCCCcchhhcc
Q 043885 472 QEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFE--AVNVVLSLQNSSGGVASYERTRSYAWMEML 549 (765)
Q Consensus 472 ~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~--av~~Lls~Qn~dGGw~~~e~~~~~~~le~l 549 (765)
| .+.-.|..--|=.|+.||..+... . .-.+|.| -.+||.++.++||||-......
T Consensus 141 --G-----GPGQl~HLA~TYAAVnaL~~~~~e-------~-A~~~InR~~l~~fL~slK~~dGgFrmh~~GE-------- 197 (423)
T KOG0365|consen 141 --G-----GPGQLPHLAPTYAAVNALCLCGSE-------D-AYSSINREKLYQFLFSLKDPDGGFRMHVEGE-------- 197 (423)
T ss_pred --C-----CCccchhhhHHHHHHHHHHhcCcH-------H-HHHHhhHHHHHHHHHHhcCCCCCeEeecCCc--------
Confidence 1 223346666788889998877421 1 1223332 4689999999999996433210
Q ss_pred ccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC----CchhHHHH
Q 043885 550 NPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGV----CFTYGTWF 625 (765)
Q Consensus 550 ~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~----~~~YgT~~ 625 (765)
+|-..+.| |.++..|... |. ++--+--.+||.+.|+=+|++.|.=++ .|||+.
T Consensus 198 ----------~DvRs~Yc-A~svasllni----~~------deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCa-- 254 (423)
T KOG0365|consen 198 ----------VDVRSAYC-ALSVASLLNI----PM------DELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCA-- 254 (423)
T ss_pred ----------chHHHHHH-HHHHHHHHCC----Cc------HHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHH--
Confidence 11111222 2222222222 21 244556679999999999999765432 466654
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHHhccc-CCCcc
Q 043885 626 GIKGLVDSGRKYENSRSIRKACDFLLSKQL-DSGGW 660 (765)
Q Consensus 626 al~aL~aaG~~~~~~~~i~rav~~Lls~Q~-~DGGW 660 (765)
+.+|+-.+.- +.-..++-.+|..++|. ..|||
T Consensus 255 -lAalalLn~~--d~ln~~~Ll~W~~~RQm~~E~GF 287 (423)
T KOG0365|consen 255 -LAALALLNEM--DQLNLEKLLEWAVRRQMRFEGGF 287 (423)
T ss_pred -HHHHHHHhhh--hhhCHHHHHHHHHHhhhhhhccc
Confidence 3344333322 23445677888888887 46776
No 54
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.45 E-value=2.9e-07 Score=70.73 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhccCCCCccccccCCCcchhhhHHHHHHHHHcC
Q 043885 151 YRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLG 193 (765)
Q Consensus 151 ~~~~~~ryl~~~Qn~DGGWgl~~~~~s~m~~Tv~~Y~aLrllG 193 (765)
.++++++||+++|++||||+..+++++++..|..++.+|+++|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999997
No 55
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.1e-05 Score=80.32 Aligned_cols=142 Identities=16% Similarity=0.163 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHH
Q 043885 517 LFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAK 596 (765)
Q Consensus 517 l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~r 596 (765)
.++++.||+++|+=||||+.-... | +....|.-+|.+|++.++..|+.-.. +..++|
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~pg~------------E---------sHgG~TfCAlAsL~L~~~l~~e~l~~--~~~~er 232 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHPGG------------E---------SHGGATFCALASLALMGKLIPEELSN--TSKVER 232 (347)
T ss_pred HHHHHHHHHHhhccccccccCCCC------------C---------CCcchhHHHHHHHHHHhhhhhhhhcc--ccCHHH
Confidence 467899999999999999842211 1 24456778888888887764432110 123899
Q ss_pred HHHHHHHhcCCCCCCCCCCC----CCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCC-Cccccccccccccc
Q 043885 597 GANFIESIQRPDGWWYGSWG----VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDS-GGWGESYVSCVDRV 671 (765)
Q Consensus 597 Av~~L~~~Q~~DGsW~g~wg----~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~D-GGWGes~~s~~~~~ 671 (765)
-++|+...|..+|++.|+-. .||.| |+...|.-.+... -..-++-.+||+++|..- |||.-.
T Consensus 233 lirWli~RQ~~sgGfqGR~NKp~DTCYaF---WigasLklL~~~~--~~d~~~lr~fll~~Q~~~iGGFsK~-------- 299 (347)
T KOG0367|consen 233 LIRWLIQRQVSSGGFQGRTNKPVDTCYAF---WIGASLKLLDADW--LIDKQVLRKFLLSTQDKLIGGFSKW-------- 299 (347)
T ss_pred HHHHHHHHhhccCCcCCCCCCCchhHHHH---HHHHHHHHccchH--hhhHHHHHHHHHHhhhhhcCcccCC--------
Confidence 99999999999999998743 35544 3333343332221 112235678999999987 999654
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHhCCC
Q 043885 672 YTNLEGNKAHNVNTAWAMLALIEAGQA 698 (765)
Q Consensus 672 Y~~l~g~~S~~~~TAwALlAL~~aG~~ 698 (765)
++..+++.+|++.+-||...++.
T Consensus 300 ----P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 300 ----PEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred ----CccCchHHHHHHHHHHHHHhcCC
Confidence 25678999999999999887765
No 56
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.13 E-value=4.7e-06 Score=63.99 Aligned_cols=43 Identities=35% Similarity=0.444 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhC
Q 043885 642 SIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAG 696 (765)
Q Consensus 642 ~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG 696 (765)
.++++++||+++|++||||+... +..+++..|.||+.+|...|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~------------~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRP------------GGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSST------------TSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCC------------CCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999998863 45789999999999998764
No 57
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.06 E-value=7.2e-06 Score=87.40 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=85.2
Q ss_pred CcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC------CchhH---HHHHHHHHHH--cC
Q 043885 566 ECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGV------CFTYG---TWFGIKGLVD--SG 634 (765)
Q Consensus 566 d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~------~~~Yg---T~~al~aL~a--aG 634 (765)
+.|...|..|+.+-. ....+.+.+++.||++||++.|-++|+|...|.. ..||. ..-++.-|.. .|
T Consensus 39 ~aT~~ei~fLa~~y~---~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 39 DATTTEIRFLARVYQ---ATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp GTTHHHHHHHHHHHH---HCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 357777777776533 2244568899999999999999999999876542 23442 2333333332 23
Q ss_pred CC-C---------CChHHHHHHHHHHHhcccC----CCccccccccccccccccCCC----CCC-cHHHHHHHHHHHHHh
Q 043885 635 RK-Y---------ENSRSIRKACDFLLSKQLD----SGGWGESYVSCVDRVYTNLEG----NKA-HNVNTAWAMLALIEA 695 (765)
Q Consensus 635 ~~-~---------~~~~~i~rav~~Lls~Q~~----DGGWGes~~s~~~~~Y~~l~g----~~S-~~~~TAwALlAL~~a 695 (765)
.. + .-..++.||+++|+++|-. -.+|+--+.. .++.|..+ -+| ....|+-.|..|+..
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~---~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~ 192 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDE---VTLQPAWARAYEPPSLSGSESVGIVRFLMSL 192 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-T---TT-SB---STT--SSEECCCHHHHHHHHCTS
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCc---ccccccccccCCCcccccccHHHHHHHHhcC
Confidence 22 2 1357899999999999983 3468654321 22222100 012 123467777888876
Q ss_pred CCCCC-CcHHHHHHHHHHHhcCcCCCCCC
Q 043885 696 GQAHR-DPTPLHRAARVLINSQMENGDFP 723 (765)
Q Consensus 696 G~~~~-d~~~i~rav~~L~~~Q~~dG~w~ 723 (765)
..+.. -.++|+.|++||.++..++..|.
T Consensus 193 ~~ps~~v~~aI~~AvaWl~~~ki~g~~~~ 221 (289)
T PF09492_consen 193 PNPSPEVLAAIEAAVAWLESVKIPGKRWE 221 (289)
T ss_dssp SS--HHHHHHHHHHHHHHCCTSEEEEEE-
T ss_pred CCCCHHHHHHHHHHHHHHHhCcCCCceeE
Confidence 54420 01488999999999887776654
No 58
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.05 E-value=7.9e-05 Score=75.01 Aligned_cols=227 Identities=20% Similarity=0.202 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCCh-hhhHHHHHHHHHhccccccccCCCCChHHHHHH
Q 043885 442 MLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIAT-DTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEA 520 (765)
Q Consensus 442 ~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~-D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~a 520 (765)
.+.+-.+||...|+.+ ||..|-. +-||+ .+|=.|++.+-.+.+ +.++.++.
T Consensus 7 ~l~rvi~fi~~Rrhed---------------GGy~f~~---~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---------------GGYCFVS---QLPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---------------CCeEEec---cCcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4688899999988754 5555532 23565 678888888776643 44678999
Q ss_pred HHHHHh-ccccCCCcccc----------ccCCCcchh--hccccccc-cccccccCCc-------cCcHHHHHHHHHhcc
Q 043885 521 VNVVLS-LQNSSGGVASY----------ERTRSYAWM--EMLNPVEN-FGESIIDYQY-------VECTSSTIQCLKSFT 579 (765)
Q Consensus 521 v~~Lls-~Qn~dGGw~~~----------e~~~~~~~l--e~l~p~e~-f~~~~~d~~~-------~d~Ta~~l~aL~~~~ 579 (765)
++||.+ ||..-+|++.- +.++++..| ..-||+|. |. .+..-++ -+.|-.+..+|.+..
T Consensus 59 iefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~-~~lggs~~f~t~~~Le~ty~~~~~l~~~n 137 (274)
T COG1689 59 IEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFA-VGLGGSEEFGTATPLEATYWMMSALNMVN 137 (274)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHh-hhcCceeecCCCchHHHHHHHHHHHHHhC
Confidence 999987 67777777521 122221111 01123221 11 1111111 244556666777765
Q ss_pred CcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCc
Q 043885 580 KHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659 (765)
Q Consensus 580 ~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGG 659 (765)
..++ +..-+|+.+.|+++|.. +.+|+... .|-++.++|.-.|... .+.. +.-..++--++||
T Consensus 138 ~~~~-----------eE~k~~v~~~~re~~~g-~~YGv~~p-nt~~t~~aly~l~~k~----~~~~-v~~Fe~~c~~~Gg 199 (274)
T COG1689 138 YEYL-----------EEMKEKVIEFVREFGIG-DAYGVTHP-NTTMTYQALYTLGSKG----PKEE-VRHFELCCGDWGG 199 (274)
T ss_pred cCch-----------HHHHHHHHHHhhhhccc-cccccCCc-chHHHHHHHHhhcccc----chHH-HHhHHhccccCCC
Confidence 4333 22235777888888754 44565433 2344455554443321 1222 3333344467888
Q ss_pred cccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccc
Q 043885 660 WGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGS 730 (765)
Q Consensus 660 WGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~ 730 (765)
|.+...|+ ++-..-|-+|+-+|-..++.. .+.+-++|+.+.|+.||+|..+...|.
T Consensus 200 f~~~P~sy-----------PPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 200 FTEVPNSY-----------PPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred cccCCCCC-----------CCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 88775544 244567999999998887642 377789999999999999988766553
No 59
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.98 E-value=0.0005 Score=69.39 Aligned_cols=128 Identities=26% Similarity=0.246 Sum_probs=85.3
Q ss_pred HHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHH
Q 043885 517 LFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAK 596 (765)
Q Consensus 517 l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~r 596 (765)
.++--+|+++.|+.+|+..+|..+. + .|-...+||-.++...| ++.
T Consensus 141 ~eE~k~~v~~~~re~~~g~~YGv~~---------------------p---nt~~t~~aly~l~~k~~----------~~~ 186 (274)
T COG1689 141 LEEMKEKVIEFVREFGIGDAYGVTH---------------------P---NTTMTYQALYTLGSKGP----------KEE 186 (274)
T ss_pred hHHHHHHHHHHhhhhccccccccCC---------------------c---chHHHHHHHHhhccccc----------hHH
Confidence 4455688999999999998876532 2 35666777766553322 111
Q ss_pred HHHHHHHhcCCCCCCCCCCCC--CchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCcccccccccccccccc
Q 043885 597 GANFIESIQRPDGWWYGSWGV--CFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTN 674 (765)
Q Consensus 597 Av~~L~~~Q~~DGsW~g~wg~--~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~ 674 (765)
-..| +..--++|+|...=+. .|+-.|..++.+|.-.|..+ .+.+-++|+.|.||+|||+..|+
T Consensus 187 v~~F-e~~c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~---------- 251 (274)
T COG1689 187 VRHF-ELCCGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSY---------- 251 (274)
T ss_pred HHhH-HhccccCCCcccCCCCCCCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeE----------
Confidence 1222 2223344444321111 34557888999998887665 45677899999999999999874
Q ss_pred CCCCCCcHHHHHHHHHHHHH
Q 043885 675 LEGNKAHNVNTAWAMLALIE 694 (765)
Q Consensus 675 l~g~~S~~~~TAwALlAL~~ 694 (765)
+++-|+..+|-.||..|..
T Consensus 252 -~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 252 -ELGISTFENTYRALASLAS 270 (274)
T ss_pred -eccccchHHHHHHHHHHHH
Confidence 2678999999888877764
No 60
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.72 E-value=5.5e-05 Score=80.78 Aligned_cols=158 Identities=15% Similarity=0.256 Sum_probs=90.1
Q ss_pred ChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCcc
Q 043885 486 ATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYV 565 (765)
Q Consensus 486 d~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~ 565 (765)
|-+.|...|.-|+.+-.. .+++...+++.+|++|||+.|-++|||+-+-+.++. +..+| +|.|
T Consensus 37 DN~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~~~I----TfND-------- 99 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YHDHI----TFND-------- 99 (289)
T ss_dssp GGGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GGGSE----E-GG--------
T ss_pred cChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CCCce----EEcc--------
Confidence 345688888888776432 245667899999999999999999999865544332 22222 1222
Q ss_pred CcHHHHHHHHHhccCcCCcc------chhHHHHHHHHHHHHHHHhcCC-CC---CCCC---------CCCCCc------h
Q 043885 566 ECTSSTIQCLKSFTKHYPKH------RRREIEEFIAKGANFIESIQRP-DG---WWYG---------SWGVCF------T 620 (765)
Q Consensus 566 d~Ta~~l~aL~~~~~~~p~~------r~~~i~~~I~rAv~~L~~~Q~~-DG---sW~g---------~wg~~~------~ 620 (765)
+....+|..|....+..+.+ ++..+..++.||+++|++.|-. +| .|.. .|+..| +
T Consensus 100 dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~ 179 (289)
T PF09492_consen 100 DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSG 179 (289)
T ss_dssp GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEEC
T ss_pred HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCccccc
Confidence 34566777676554332322 3445778999999999999973 33 3431 122111 1
Q ss_pred hHHHHHHHHHHHcCCC-CCChHHHHHHHHHHHhcccCCCcc
Q 043885 621 YGTWFGIKGLVDSGRK-YENSRSIRKACDFLLSKQLDSGGW 660 (765)
Q Consensus 621 YgT~~al~aL~aaG~~-~~~~~~i~rav~~Lls~Q~~DGGW 660 (765)
--|.-+|.-|...-.+ .+.-.+|..|++||.++..++.-|
T Consensus 180 ~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 180 SESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp CCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 1244444445433211 123467889999999988877665
No 61
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=97.60 E-value=0.0035 Score=74.83 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccc-cCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHh
Q 043885 422 DTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCW-YRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLL 500 (765)
Q Consensus 422 DTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~-~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l 500 (765)
|++++++||..+|.+ +..++.++||.+.|..+ |.|-.. +.+.....|.. -.-.|.|+..|-|+...
T Consensus 299 D~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~~dG~~~~~~~------~~Q~D~~g~~l~al~~y 365 (616)
T TIGR01577 299 DASYIATALDRAGYH----DRVDRFFRWAMQTQSRD---GSWQQRYYLNGRLAPLQW------GLQIDETGSILWAMDQH 365 (616)
T ss_pred cHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcC---CCcceEEecCCCCCCCCC------CccccchhHHHHHHHHH
Confidence 899999999999975 45788999999999875 665332 22222221211 13457799988887543
Q ss_pred ccccccccCC-C---CChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHH
Q 043885 501 SEMSYDLVGE-A---IPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLK 576 (765)
Q Consensus 501 ~~~~~~~~g~-~---~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~ 576 (765)
-+.. +. . ..-+.++++++|+.....+++.-. +. .-|-+ . . . ..+...+.+..||.
T Consensus 366 ~~~t----~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~----~~-~lWEe-r-----~-----G-~~~~t~a~~~aAL~ 424 (616)
T TIGR01577 366 YRLT----NDRAFLEEIWESVQKAAQYLILFIDPETPLP----CR-DLWEE-R-----E-----G-VFTYTASAVYGGLD 424 (616)
T ss_pred HHHH----CCHHHHHHHHHHHHHHHHHHHHhccCCCCCC----CC-cccee-c-----C-----C-ccCccHHHHHHHHH
Confidence 2211 11 1 112568999999998765431111 00 01111 0 0 0 12334556655664
Q ss_pred hccCcCCccchhHHHHHHHHHHHHHH-----HhcCCCCCCCCC-CCC---CchhHHHHHHHHHH-HcCCCCCChHHHHHH
Q 043885 577 SFTKHYPKHRRREIEEFIAKGANFIE-----SIQRPDGWWYGS-WGV---CFTYGTWFGIKGLV-DSGRKYENSRSIRKA 646 (765)
Q Consensus 577 ~~~~~~p~~r~~~i~~~I~rAv~~L~-----~~Q~~DGsW~g~-wg~---~~~YgT~~al~aL~-aaG~~~~~~~~i~ra 646 (765)
...+........+......+..+.|. ..-.++++++.+ .+. ..+--. .+.+|. ..|.-..+++.+...
T Consensus 425 ~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~~~~~vDa--SlL~l~~~~g~l~~~Dpr~v~T 502 (616)
T TIGR01577 425 AAAAVADKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMVLDKTIDI--SILGISVPFNLIAPDDERMVKM 502 (616)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCCCCCcccH--HHHhHHHhcCCCCCCChHHHHH
Confidence 43221000000111122333333333 334556655532 110 111112 233443 356433356666655
Q ss_pred HHHHHhcccC--CCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCc---------HHHHHHHHHHHhc
Q 043885 647 CDFLLSKQLD--SGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDP---------TPLHRAARVLINS 715 (765)
Q Consensus 647 v~~Lls~Q~~--DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~---------~~i~rav~~L~~~ 715 (765)
++-+.+.=.. +|||..- ....|.+ +.+=...|.|...+++.+|....+. +..++-++|++++
T Consensus 503 v~~I~~~L~~~~~ggi~RY----~~D~y~~---g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~ 575 (616)
T TIGR01577 503 AEAIEKHLTSPIVGGIKRY----ENDPYVG---GNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDH 575 (616)
T ss_pred HHHHHHHhcccCCCeeeCC----CCCCCCC---CCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhc
Confidence 5555443222 6777532 2223432 3344588999999999988653211 1234557888898
Q ss_pred CcCCCCCCCCcc--ccccCCcccc
Q 043885 716 QMENGDFPQQEI--MGSFTRNCMI 737 (765)
Q Consensus 716 Q~~dG~w~~~~~--~g~f~~~~~~ 737 (765)
.++.|-++||-- +|..-.++-+
T Consensus 576 ~~~~Gll~Eqvd~~~g~~~g~~Pl 599 (616)
T TIGR01577 576 RTDLGLLPEQVDKETGKPAWAVPL 599 (616)
T ss_pred CCCCCCCccccCCCCCCCCCcCCc
Confidence 899999998753 4433344433
No 62
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.34 E-value=0.0039 Score=68.71 Aligned_cols=280 Identities=14% Similarity=0.127 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHH
Q 043885 420 LWDTAFAVHAILSTNL-VDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSV 498 (765)
Q Consensus 420 ~WDTalai~AL~~ag~-~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~ 498 (765)
-|..++...+|.++-. ..+ ..-++.+.+|....+.... . .... |.-+.+..+..+.
T Consensus 24 ~W~~G~~~~gl~~~~~~tgd-~~~~~~a~~~~~~~~~~~~---~--------------~~~~-----d~~~~g~~~~~~y 80 (336)
T PF07470_consen 24 DWTNGVFWYGLLEAYEYTGD-ERYLDYAERWADRFIEEDG---S--------------DYNL-----DDHDIGFLLLDLY 80 (336)
T ss_dssp SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---T--------------TTSC-----CGTTHHHHHHHHH
T ss_pred CcChhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHhccC---C--------------ccCC-----chhhhHHHHHHHH
Confidence 5888876666665421 222 3445556666666544321 1 0011 1112444444444
Q ss_pred HhccccccccCCCCChHHHHHHHHHHHhcccc--CCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHH
Q 043885 499 LLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNS--SGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLK 576 (765)
Q Consensus 499 ~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~--dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~ 576 (765)
... |++...+.+.++.++++..+.+ +|++.......... .+|+-.+++..|.
T Consensus 81 ~~t-------~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~-------------------wiD~~~M~~p~l~ 134 (336)
T PF07470_consen 81 ERT-------GDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQV-------------------WIDGMYMNLPFLA 134 (336)
T ss_dssp HHH--------THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEE-------------------ETTHHHHHHHHHH
T ss_pred HHh-------CCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCce-------------------eeccccccHHHHH
Confidence 332 3445677888899988876654 89986522221111 2344445555665
Q ss_pred hccCcCCccchhHHHHHHHHHHHHHHHhcCC-CCCCCCC--------CC-CCchhHHHHHHHHHHHcCC----C----CC
Q 043885 577 SFTKHYPKHRRREIEEFIAKGANFIESIQRP-DGWWYGS--------WG-VCFTYGTWFGIKGLVDSGR----K----YE 638 (765)
Q Consensus 577 ~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~-DGsW~g~--------wg-~~~~YgT~~al~aL~aaG~----~----~~ 638 (765)
...+...+ .+-.+.+++.+..+......+ +|-|... |. .+-.-|.++++.||+.+=. . ..
T Consensus 135 ~~~~~tgd--~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~ 212 (336)
T PF07470_consen 135 WAGKLTGD--PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDE 212 (336)
T ss_dssp HHHHHHTG--HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHCC--cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHH
Confidence 55432211 122345666666666666654 6766422 21 2345578888888874311 0 01
Q ss_pred ChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHH---hCCCCCC--cHHHHHHHHHHH
Q 043885 639 NSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIE---AGQAHRD--PTPLHRAARVLI 713 (765)
Q Consensus 639 ~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~---aG~~~~d--~~~i~rav~~L~ 713 (765)
-....++.++.|.+.|.+||.|...... +. ++...+.+.||.+.-||+. .|..+.. ..+++|+.+.|+
T Consensus 213 ~~~~~~~~~~~l~~~q~~~G~w~~~~~~---~~----~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~ 285 (336)
T PF07470_consen 213 LLEIAKKLADALARYQDEDGLWYQDLDD---PD----PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALL 285 (336)
T ss_dssp HHHHHHHHHHHHHTTSTTTSBEBSBTTT---TT----TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceecCC---CC----CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 1345667788899999999999765321 11 0234567888877777743 4544211 147889999999
Q ss_pred hc-CcCCCC--CCCCccccccC---CccccccCCccchHHHHHHHHHHHh
Q 043885 714 NS-QMENGD--FPQQEIMGSFT---RNCMISYSAWRNIFPIWALGAFYNR 757 (765)
Q Consensus 714 ~~-Q~~dG~--w~~~~~~g~f~---~~~~~~Y~~Yr~~fpl~ALg~y~~~ 757 (765)
+. -.+||. +.+.+...... ..-......|-..+-|+||.||.|.
T Consensus 286 ~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 286 SNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp HCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHHHCG
T ss_pred hCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 99 788888 66543322211 1112334568899999999999875
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.31 E-value=0.051 Score=66.02 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=54.4
Q ss_pred ccCCCCCcchHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHhccCCCCccccccC--CCcchhhhHHHHHHHHHcCCCCC
Q 043885 121 GDYAGPLFLLPCLVIGLYIT-GDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIE--GESTMLNTVLSYVGLRLLGERMD 197 (765)
Q Consensus 121 ~~~~g~~~~~~~~vial~~~-g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~--~~s~m~~Tv~~Y~aLrllG~~~~ 197 (765)
|+.+.++..||= |-...-. |.. .+.-.+.++||++.|.+|||||.... ..-.+..|.-+-+||+-=...+
T Consensus 91 g~~S~S~YDTAW-VAmVp~~~g~~-----~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~- 163 (800)
T PLN02592 91 GEISISAYDTAW-VALVEDINGSG-----TPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHP- 163 (800)
T ss_pred CCcCCcHHHhHH-HhhcccCCCCC-----CCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccH-
Confidence 566666666776 3222222 321 13345789999999999999997522 2344677777778888754432
Q ss_pred CCchHHHHHHHHHHh
Q 043885 198 GGDGAIEKARKWILG 212 (765)
Q Consensus 198 ~~~~~~~rAr~~Il~ 212 (765)
.++.|+..||.+
T Consensus 164 ---~~i~rGl~fi~~ 175 (800)
T PLN02592 164 ---EKCEKGMSFFRE 175 (800)
T ss_pred ---HHHHHHHHHHHH
Confidence 468999999995
No 64
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.29 E-value=0.011 Score=71.51 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCC-CCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCC-ccccccccccccc
Q 043885 594 IAKGANFIESIQRPD-GWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSG-GWGESYVSCVDRV 671 (765)
Q Consensus 594 I~rAv~~L~~~Q~~D-GsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DG-GWGes~~s~~~~~ 671 (765)
-.++++||.+....- |+-...+.+. .+-..+.|-.|...|..+.-.+.|+++.+.+.+.=...| ||+..
T Consensus 284 d~~cl~YL~~~~~k~~GgVP~vyP~d-~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~-------- 354 (800)
T PLN02592 284 DENCLEYLNKAVQRFNGGVPNVYPVD-LFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARN-------- 354 (800)
T ss_pred chHHHHHHHHHHHHcCCCCCCCCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccC--------
Confidence 356667776654433 3333333332 346678888999999998788999999999986322223 55311
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHhCCC
Q 043885 672 YTNLEGNKAHNVNTAWAMLALIEAGQA 698 (765)
Q Consensus 672 Y~~l~g~~S~~~~TAwALlAL~~aG~~ 698 (765)
....+...||.++..|...|..
T Consensus 355 -----~~~~Dld~TALaFRLLRqhGy~ 376 (800)
T PLN02592 355 -----SHVHDIDDTAMGFRLLRLHGHQ 376 (800)
T ss_pred -----CCcCCHHHHHHHHHHHHHcCCC
Confidence 1235788999999999999875
No 65
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.22 E-value=0.0039 Score=67.81 Aligned_cols=106 Identities=24% Similarity=0.279 Sum_probs=76.9
Q ss_pred ccCcHHHHHHHHHhccCcCCc--cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCC-h
Q 043885 564 YVECTSSTIQCLKSFTKHYPK--HRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYEN-S 640 (765)
Q Consensus 564 ~~d~Ta~~l~aL~~~~~~~p~--~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~-~ 640 (765)
.||.+|+++.||.-..+..+. .-+.+|..+|++.++.|.+.|.+||.++ .+|.|..|++||...+..+.. .
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~ 258 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESE 258 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHH
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchh
Confidence 578899999999766543222 2235688899999999999999999862 488999999999999887632 3
Q ss_pred HHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHh
Q 043885 641 RSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEA 695 (765)
Q Consensus 641 ~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~a 695 (765)
....++.+.|++. -++|.|+. +..+|-.|-+|.--
T Consensus 259 w~C~k~~~~ll~~-i~~G~F~n-------------------P~a~aQiLPaL~gK 293 (326)
T PF01122_consen 259 WNCQKALDALLKE-ISQGAFQN-------------------PMAIAQILPALNGK 293 (326)
T ss_dssp HHHHHHHHHHHHH-HTTTTT-S-------------------HHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHH-hhcCCCCC-------------------HHHHHHHHHHHcCC
Confidence 6788999999985 46898843 56677777777543
No 66
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0062 Score=77.82 Aligned_cols=210 Identities=20% Similarity=0.124 Sum_probs=123.4
Q ss_pred CCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCC
Q 043885 484 WIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQ 563 (765)
Q Consensus 484 ~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~ 563 (765)
..-.+.||.+|+.+..... ...++...+.+|++||..+|..+|.|..-. +.+.+.|...-
T Consensus 999 ~~stWLtafvlr~f~~a~~------~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~--------------~v~~~~~qg~l 1058 (1436)
T KOG1366|consen 999 SGSTWLTAFVLRVFSQAKE------YIFIDPNVITQALNWLSQQQKENGSFKEVG--------------EVLHNEMQGGL 1058 (1436)
T ss_pred cccHHHHHHHHHHhhhccC------ceEecHHHHHHHHHHHHHhhccCceEeccc--------------cccchhhhcCC
Confidence 3567889999999987632 235688899999999999999999995211 11111111100
Q ss_pred c--cCcHHHHHHHHHhccCcCCccchhHH-HHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCCh
Q 043885 564 Y--VECTSSTIQCLKSFTKHYPKHRRREI-EEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENS 640 (765)
Q Consensus 564 ~--~d~Ta~~l~aL~~~~~~~p~~r~~~i-~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~ 640 (765)
. +-.|+.++..+. . + ...+.+++.|+++.-..- ...+|..+....||..++.+
T Consensus 1059 ~~~~~l~~~~l~~~~------~------~~~~~~~~a~~~~~~~~~~~--------~~~~~~~a~~ayAl~l~~sp---- 1114 (1436)
T KOG1366|consen 1059 QDIVALTAIVLSVIL------D------VDNASIQKAVAYLEESLDSG--------SMDVYTVAITAYALQLAKSP---- 1114 (1436)
T ss_pred CCcceeeeEeeeeec------c------chhhHHHHHHHHHhhccCcc--------ccccchHHHHHHHHHhccCc----
Confidence 0 111111111111 0 1 356899999998754322 12455555555666665544
Q ss_pred HHHHHHHHHHHhcccCCC---ccccccccccccc-cccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcC
Q 043885 641 RSIRKACDFLLSKQLDSG---GWGESYVSCVDRV-YTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQ 716 (765)
Q Consensus 641 ~~i~rav~~Lls~Q~~DG---GWGes~~s~~~~~-Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q 716 (765)
...+++.-|.+.-...| .|........++. |.+ .+..-++..|+|||++++...+.+ .+...++||.+++
T Consensus 1115 -~a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~-q~~s~~VE~tsYaLL~~~~~~~~~----~~~pivrWl~~qr 1188 (1436)
T KOG1366|consen 1115 -QAAKALAKLKSLARVEGDRRYWWASALKAKNAVKYSP-QARSIDVETTAYALLAYLLLAQVD----YALPIVRWLVEQR 1188 (1436)
T ss_pred -hHHHHHHhhhhhhcccCCceeeeeccccccCcccCCC-ccchhhccchHHHHHHHHHhcccC----cCchhHhhhhhhh
Confidence 22333333443332222 2433322222222 332 122346788999999998876543 2455789999999
Q ss_pred cCCCCCCCCccccccCCccccccCCccchHHHHHHHHHHHhcc
Q 043885 717 MENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVL 759 (765)
Q Consensus 717 ~~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~ 759 (765)
+..|+|... .-.+-.|-||.+|.....
T Consensus 1189 ~~~GGf~ST----------------QdTvvalqaLs~y~~~~~ 1215 (1436)
T KOG1366|consen 1189 NALGGFSST----------------QDTVVALQALSEYAALSH 1215 (1436)
T ss_pred cccCceeeh----------------HHHHHHHHHHHHhhhhcc
Confidence 999999653 346678999999976543
No 67
>PLN02279 ent-kaur-16-ene synthase
Probab=96.64 E-value=0.028 Score=68.32 Aligned_cols=255 Identities=13% Similarity=0.115 Sum_probs=131.3
Q ss_pred CCcHHHHHHHHHHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccc
Q 043885 387 PNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCW 466 (765)
Q Consensus 387 p~~~~~~~~l~~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~ 466 (765)
|.+-.+...+++|+..+.. +. . ..+.+|||++.+ +..--... .|..-.+++||++.|..+ |
T Consensus 30 ~~~~~~~~~~~~i~~~l~~----~e---~-s~s~YDTAWvam--v~~~~~~~-~p~Fp~~~~wil~nQ~~d---G----- 90 (784)
T PLN02279 30 ANNVSFEGTKERIKKMFDK----VE---L-SVSSYDTAWVAM--VPSPNSQQ-APLFPECVKWLLENQLED---G----- 90 (784)
T ss_pred CccccchhHHHHHHHHhcc----Cc---C-CCchhhhHHHHh--cccCCCCC-CCCChHHHHHHHhcCCCC---C-----
Confidence 3334455667777776542 11 2 346799999855 33211122 578888999999999875 4
Q ss_pred cCCCCCCCCCCCCCCCCCCChhh---hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCc
Q 043885 467 YRHEFQEGWPFSSLDNGWIATDT---TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSY 543 (765)
Q Consensus 467 ~~~~~~GgW~fs~~~~~~pd~D~---TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~ 543 (765)
+|+-.+. +.....|+ |..++.||..-.. .++.+.+++.+|.+--.. ..-+....+
T Consensus 91 -------sWg~~~~-~~~~~~D~ll~TlAcvlAL~~w~~----------~~~~~~~gl~fi~~n~~~----~~d~~~~~p 148 (784)
T PLN02279 91 -------SWGLPHD-HPLLVKDALSSTLASILALKKWGV----------GEEQINKGLQFIELNSAS----VTDEKQHKP 148 (784)
T ss_pred -------CCCCCCC-CcchhHHhhHHHHHHHHHHHHHhc----------CcccchhhHHHHHHHHHh----hcccccCCC
Confidence 4543211 22233454 6666666655431 234567777776531110 000111112
Q ss_pred chhhccccc--cccccccccCCccCcHHHHHHHHHhccC----cCCc---cchhH----HHHHHHHHHHH--HHHhcCCC
Q 043885 544 AWMEMLNPV--ENFGESIIDYQYVECTSSTIQCLKSFTK----HYPK---HRRRE----IEEFIAKGANF--IESIQRPD 608 (765)
Q Consensus 544 ~~le~l~p~--e~f~~~~~d~~~~d~Ta~~l~aL~~~~~----~~p~---~r~~~----i~~~I~rAv~~--L~~~Q~~D 608 (765)
-+.|.+=|+ |...+..++.++. ...|+.+..-.+ ..|. +..+. .-+.+..-++| +.+.|..|
T Consensus 149 vGfei~fP~ll~~a~~~gl~~~~~---~~~l~~~~~~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~ 225 (784)
T PLN02279 149 IGFDIIFPGMIEYAKDLDLNLPLG---SEVVDAMLHKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKN 225 (784)
T ss_pred ceEEEehHHHHHHHHHcCCCCCCC---hHHHHHHHHhhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCC
Confidence 223333221 1111222333332 233333311110 0000 00000 01223333344 67889999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHH
Q 043885 609 GWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWA 688 (765)
Q Consensus 609 GsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwA 688 (765)
||...+ .-.|+.+++ ..+ -.++.+||.+.++.-||.--+ .| +.+.....|.
T Consensus 226 Gs~~~S-----PsaTAa~l~---~~~--------~~~~~~yL~~~~~~~~g~vP~-------~y------p~~~fe~l~l 276 (784)
T PLN02279 226 GSLFNS-----PSTTAAAFS---HLQ--------NAGCLRYLRSLLQKFGNAVPT-------VY------PLDQYARLSM 276 (784)
T ss_pred CCcccC-----cHHHHHHHH---ccC--------ChHHHHHHHHHHHhcCCCCCC-------CC------cccHHHHhHH
Confidence 998543 446766653 221 158899999988776653211 12 3568899999
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHh
Q 043885 689 MLALIEAGQAHRDPTPLHRAARVLIN 714 (765)
Q Consensus 689 LlAL~~aG~~~~d~~~i~rav~~L~~ 714 (765)
+-+|..+|....=...|+..++.+-+
T Consensus 277 vd~L~rlGi~~hF~~EI~~~L~~~~~ 302 (784)
T PLN02279 277 VDTLERLGIDRHFRKEIKSVLDETYR 302 (784)
T ss_pred HHHHHHhCCccccHHHHHHHHHHHHH
Confidence 99999999763212358888877765
No 68
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.17 E-value=0.052 Score=59.84 Aligned_cols=242 Identities=19% Similarity=0.136 Sum_probs=126.9
Q ss_pred HHHHHHHHHHH-cCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHh
Q 043885 422 DTAFAVHAILS-TNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLL 500 (765)
Q Consensus 422 DTalai~AL~~-ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l 500 (765)
+.++++..+-+ ++ .+++...+.++.+|+.+.+.+.. .|.+ .....+..+--+|+--.++..|..+
T Consensus 71 ~~g~~~~~~y~~t~-d~~y~~~~~~~a~~~l~~~~~~~-~G~~------------~~~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 71 DIGFLLLDLYERTG-DEKYKDAAIQAADWLLARRPRTS-DGGF------------WHNRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp THHHHHHHHHHHH--THHHHHHHHHHHHHHHHTSCBEC-TGCB------------ECTTTSTTEEETTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhCCCCC-CCcc------------ccCCCCCCceeeccccccHHHHHHH
Confidence 44554444443 34 55678889999998888776521 1332 1122223333467665677777666
Q ss_pred ccccccccCCCC-ChHHHHHHHHHHHhcccc-CCCcc-ccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHh
Q 043885 501 SEMSYDLVGEAI-PLNRLFEAVNVVLSLQNS-SGGVA-SYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKS 577 (765)
Q Consensus 501 ~~~~~~~~g~~~-~~~~l~~av~~Lls~Qn~-dGGw~-~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~ 577 (765)
+... |++. .+.++.....+...+.++ +|-|- .+....... .++.. -.-..+-++.+|..
T Consensus 137 ~~~t----gd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~----------~s~~~----WsRG~gW~~~Gl~~ 198 (336)
T PF07470_consen 137 GKLT----GDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYAD----------WSDSF----WSRGNGWAIYGLAE 198 (336)
T ss_dssp HHHH----TGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSST----------TST------BHHHHHHHHHHHHH
T ss_pred HHHH----CCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcC----------ccccc----CcchhhHHHHHHHH
Confidence 5432 3321 122333333344445554 44442 111110000 00000 01123444555554
Q ss_pred ccCcCCc--cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC------CchhHHHHHHHHHH---HcCCCC--CChHHHH
Q 043885 578 FTKHYPK--HRRREIEEFIAKGANFIESIQRPDGWWYGSWGV------CFTYGTWFGIKGLV---DSGRKY--ENSRSIR 644 (765)
Q Consensus 578 ~~~~~p~--~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~------~~~YgT~~al~aL~---aaG~~~--~~~~~i~ 644 (765)
.-+..|. ...+++.+..++.++.|.+.|.+||.|+-...- --+.||+.+..||. ..|... ...+.++
T Consensus 199 ~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~ 278 (336)
T PF07470_consen 199 VLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAE 278 (336)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 3222222 123456677888889999999999999743221 23568888888884 345431 1257889
Q ss_pred HHHHHHHhc-ccCCCc--cccccccccccccccCCCCCCcHHHHHHHHHHHHHh
Q 043885 645 KACDFLLSK-QLDSGG--WGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEA 695 (765)
Q Consensus 645 rav~~Lls~-Q~~DGG--WGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~a 695 (765)
|+.+.|.++ =++||. +-..+....-..|.+.+....++...++.|+||+..
T Consensus 279 ~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 279 KALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp HHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 999999999 777887 654444333112322111234578899999998764
No 69
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.05 E-value=0.67 Score=55.61 Aligned_cols=287 Identities=16% Similarity=0.084 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhc
Q 043885 422 DTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLS 501 (765)
Q Consensus 422 DTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~ 501 (765)
|.+++++||..+|.. +.-++.++||.+.|..+ |.|-..| ...|-+.... --.|.||+.|.++..+.
T Consensus 299 D~a~~a~AL~~~G~~----~~a~~~~~~l~~~~~~~---G~~lq~y---~vdG~~~~~~----iQlD~~g~~i~~~~~l~ 364 (648)
T TIGR01535 299 DLYQVANAFLAAGDV----DSALRSLDYLAKVQQDN---GMFPQNS---WVDGKPYWTG----IQLDETAFPILLAYRLH 364 (648)
T ss_pred hHHHHHHHHHHCCCH----HHHHHHHHHHHHHhccC---CCcCcee---ccCCCCCCCC----ccccHHHHHHHHHHHHH
Confidence 899999999999975 45799999999999875 5543222 1222221111 12589999999887765
Q ss_pred cccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCc
Q 043885 502 EMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKH 581 (765)
Q Consensus 502 ~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~ 581 (765)
+. +.....+.|+++++||...- +.=...-||...+ ....+.+.++.||....+.
T Consensus 365 ~~-----~~~~~~~~vk~aadfl~~~~-p~p~~d~WEer~g--------------------~~~~T~a~v~aaL~~Aa~i 418 (648)
T TIGR01535 365 RY-----DHAFYDKMLKPAADFIVKNG-PKTGQERWEEIGG--------------------YSPSTLAAEIAGLTAAADI 418 (648)
T ss_pred Hc-----CcHHHHHHHHHHHHHHHHcC-CCCCCCcccccCC--------------------cCchhHHHHHHHHHHHHHH
Confidence 42 22234467999999999742 1111111221111 1123456666666543221
Q ss_pred CCccchhHHHHHHHHHHHH----HH-HhcCCCCCC-----CCCC----------------CCCchhHH---HHHHHHHHH
Q 043885 582 YPKHRRREIEEFIAKGANF----IE-SIQRPDGWW-----YGSW----------------GVCFTYGT---WFGIKGLVD 632 (765)
Q Consensus 582 ~p~~r~~~i~~~I~rAv~~----L~-~~Q~~DGsW-----~g~w----------------g~~~~YgT---~~al~aL~a 632 (765)
-......+......++.+. ++ ..-.++|.. |-+- +....|+. -..+..|..
T Consensus 419 A~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~L~~ 498 (648)
T TIGR01535 419 AEQNGDAGSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLELVR 498 (648)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHHHHH
Confidence 0000000001112222222 22 223344222 1000 00000110 022345566
Q ss_pred cCCCCCChHHHHHHHHHHHhcccCC----CccccccccccccccccC-C------C--CCCcHHHHHHHHHHHHHhCCCC
Q 043885 633 SGRKYENSRSIRKACDFLLSKQLDS----GGWGESYVSCVDRVYTNL-E------G--NKAHNVNTAWAMLALIEAGQAH 699 (765)
Q Consensus 633 aG~~~~~~~~i~rav~~Lls~Q~~D----GGWGes~~s~~~~~Y~~l-~------g--~~S~~~~TAwALlAL~~aG~~~ 699 (765)
.|....+++.+.+-++-+.+.-..| |+|..-.. ..|..- + + +..=+.-|.|-=.-.+++++.
T Consensus 499 ~G~~~~dDPri~~Tl~aIe~~L~~~~~~~g~~~RY~~----Dgyg~~~~~~~~~~~~~G~~Wpi~T~~~~~y~l~~~~~- 573 (648)
T TIGR01535 499 LGVKSPDDPHILATLKEIDSTIKVDTPKGPSWYRYTH----DGYGEPAKTEAYDGTGKGRLWPLLTGERGHYELAAGKD- 573 (648)
T ss_pred cCCcCCCCHHHHHHHHHHHHHhccCCCCCCeEEecCC----CCCCCcCCCCCccCCcCCceeehhhhHHHHHHHHcCCh-
Confidence 7876557888888888777666655 67743211 112100 0 1 122345565544433444431
Q ss_pred CCcHHHHHHHHHHHhcCcCCCCCCCCccccc-cC-CccccccCCccchHH-HHHHHHHHHhcc
Q 043885 700 RDPTPLHRAARVLINSQMENGDFPQQEIMGS-FT-RNCMISYSAWRNIFP-IWALGAFYNRVL 759 (765)
Q Consensus 700 ~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~-f~-~~~~~~Y~~Yr~~fp-l~ALg~y~~~~~ 759 (765)
...-++|+...-++.|-.|||--.++ -+ +.+.+-- +-...-| .||=++|.+.+.
T Consensus 574 -----a~~~l~~~~~~a~~~g~lpEQV~d~~~~~~~~~~~G~-pt~Sa~PL~WsHA~yi~l~~ 630 (648)
T TIGR01535 574 -----ATPYLKAMEKFANEGGMIPEQVWDQTDLPSRGLFYGL-PTDSASPLNWAHAEYVKLLR 630 (648)
T ss_pred -----HHHHHHHHHHhcCcCCCcCcccCCCCCCcccccccCC-cCCccccchhhHHHHHHHHH
Confidence 34678888888888898998854443 01 1111111 1124456 699999988653
No 70
>PLN02279 ent-kaur-16-ene synthase
Probab=95.89 E-value=0.42 Score=58.41 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccCCCCccccccCC----CcchhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHh
Q 043885 151 YRREMLRYLYNHQNEDGGWGLHIEG----ESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILG 212 (765)
Q Consensus 151 ~~~~~~ryl~~~Qn~DGGWgl~~~~----~s~m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~ 212 (765)
.-.+.++||+++|.+||+||..... .-.+..|.-+-+||+-=+..++. +.|+-.||.+
T Consensus 74 ~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~~~----~~~gl~fi~~ 135 (784)
T PLN02279 74 LFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGEEQ----INKGLQFIEL 135 (784)
T ss_pred CChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCccc----chhhHHHHHH
Confidence 3456899999999999999976332 24577888788899988776544 7888888884
No 71
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.37 E-value=1.5 Score=48.96 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=65.0
Q ss_pred CCchhHHHHHHHHHHHcCC---CCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHH
Q 043885 417 GSQLWDTAFAVHAILSTNL---VDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEG 493 (765)
Q Consensus 417 gs~~WDTalai~AL~~ag~---~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~a 493 (765)
..++|.+|++|.|++.+.. .++..+..+++.+||.+.-...++ |+|-.... ..|. ..+. -++..+-+.+
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~-Gg~~~~~~--~~g~----~~~~-~~~l~~~a~~ 120 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDH-GGWYFALD--QDGR----PVDA-TKDLYSHAFA 120 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCC-CCEEEEEc--CCCC----Cccc-ccchHHHHHH
Confidence 4568899999999987632 344566778999999885433211 44422211 0111 0111 1456778899
Q ss_pred HHHHHHhccccccccCCCCChHHHHHHHHHHHhccc-cCCCc
Q 043885 494 LNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQN-SSGGV 534 (765)
Q Consensus 494 L~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn-~dGGw 534 (765)
|.|+..+.+. .|++...+...+.++++.+..- .+||+
T Consensus 121 l~ala~~~~a----t~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 121 LLAAAQAAKV----GGDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 9998877643 2455556677777888877663 45665
No 72
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=95.33 E-value=0.042 Score=59.95 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=72.9
Q ss_pred HHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCC--------CC
Q 043885 568 TSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKY--------EN 639 (765)
Q Consensus 568 Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~--------~~ 639 (765)
-+..+.||..+++.+ ....+.+++ +..+.+.. ++.+ -.+-.++.|+.||.-+.... ..
T Consensus 148 ~sL~vLALCv~~~~~----------~~~~v~kL~-~~~~~~~~-~~~~--~sVDT~AmA~LALtCv~~~~~~~~~~~~~i 213 (326)
T PF01122_consen 148 YSLGVLALCVHNKRV----------SLSVVAKLL-KAENHNFY-HGSQ--FSVDTGAMAVLALTCVKNSNPNGPELRRRI 213 (326)
T ss_dssp HHHHHHHHHHTTHHH----------HHHHHHHHH-HHHHSSTS-S-ST--CHHHHHHHHHHHHHHHHTTTSTTGGGHHHH
T ss_pred hHHHHHHHHccCCCc----------CHHHHHHHH-HHHHhhcc-cCCC--CCccHHHHHHHHHHHHhccCcCcHhHHHHH
Confidence 356678888875321 122223333 34444411 1221 12334556666776432211 12
Q ss_pred hHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHhcCcC
Q 043885 640 SRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRD-PTPLHRAARVLINSQME 718 (765)
Q Consensus 640 ~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d-~~~i~rav~~L~~~Q~~ 718 (765)
..+|++.++.|++.|.+||.+|.. +.|+.||.||..++..... .-...++.+.|++. ..
T Consensus 214 ~~~i~~~~~kIl~~q~~~G~~GNi-------------------ySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~ 273 (326)
T PF01122_consen 214 QQAIRSLVEKILSQQKPNGLFGNI-------------------YSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-IS 273 (326)
T ss_dssp HHHHHHHHHHHHHTB-TTS-BSST-------------------TTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHhcCCCCcccch-------------------hhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hh
Confidence 457778888899999999999863 4699999999999875432 13588999999985 46
Q ss_pred CCCCCCC
Q 043885 719 NGDFPQQ 725 (765)
Q Consensus 719 dG~w~~~ 725 (765)
+|.|...
T Consensus 274 ~G~F~nP 280 (326)
T PF01122_consen 274 QGAFQNP 280 (326)
T ss_dssp TTTT-SH
T ss_pred cCCCCCH
Confidence 8988764
No 73
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=94.32 E-value=1.7 Score=52.07 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccc-cccCCCcchhhcccccccccccccc-CCccC
Q 043885 489 TTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVAS-YERTRSYAWMEMLNPVENFGESIID-YQYVE 566 (765)
Q Consensus 489 ~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~-~e~~~~~~~le~l~p~e~f~~~~~d-~~~~d 566 (765)
|++.++.||+.++ ..+..++.++||.+.|.+||+|.. +..+.+.. | .+ ..-.|
T Consensus 299 D~~~~a~Al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~------~--------~~~~~Q~D 353 (616)
T TIGR01577 299 DASYIATALDRAG-----------YHDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLA------P--------LQWGLQID 353 (616)
T ss_pred cHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhCcCCCcceEEecCCCCC------C--------CCCCcccc
Confidence 5888888988764 357788899999999999999842 11211110 1 01 12346
Q ss_pred cHHHHHHHHHhccCcCCc-cchhHHHHHHHHHHHHHHHhcC------CCCCCCCCCCCCchhHHHHHHHHHHH
Q 043885 567 CTSSTIQCLKSFTKHYPK-HRRREIEEFIAKGANFIESIQR------PDGWWYGSWGVCFTYGTWFGIKGLVD 632 (765)
Q Consensus 567 ~Ta~~l~aL~~~~~~~p~-~r~~~i~~~I~rAv~~L~~~Q~------~DGsW~g~wg~~~~YgT~~al~aL~a 632 (765)
.++.+|.++..+.+...+ .-.+++-+.|+++++|+.+... ..|-|..+.|. ++|..+.+..||.+
T Consensus 354 ~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~G~-~~~t~a~~~aAL~~ 425 (616)
T TIGR01577 354 ETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEEREGV-FTYTASAVYGGLDA 425 (616)
T ss_pred chhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecCCc-cCccHHHHHHHHHH
Confidence 688888877544221111 1122345689999999998652 33446555553 67777777777764
No 74
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.62 Score=60.25 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=42.4
Q ss_pred ccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 043885 564 YVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDS 633 (765)
Q Consensus 564 ~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aa 633 (765)
.+|.|+.++.++....+. + .+...++||.+.++..|+| ..+..|..++.||...
T Consensus 1157 ~VE~tsYaLL~~~~~~~~-~---------~~~pivrWl~~qr~~~GGf------~STQdTvvalqaLs~y 1210 (1436)
T KOG1366|consen 1157 DVETTAYALLAYLLLAQV-D---------YALPIVRWLVEQRNALGGF------SSTQDTVVALQALSEY 1210 (1436)
T ss_pred hccchHHHHHHHHHhccc-C---------cCchhHhhhhhhhcccCce------eehHHHHHHHHHHHHh
Confidence 478999999888776542 1 3556688999999999988 3578899999999753
No 75
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=91.58 E-value=1.3 Score=53.31 Aligned_cols=123 Identities=13% Similarity=0.119 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCcc-ccccCCCcchhhcccccc
Q 043885 475 WPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVA-SYERTRSYAWMEMLNPVE 553 (765)
Q Consensus 475 W~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~-~~e~~~~~~~le~l~p~e 553 (765)
|.|.+ .||- |.++++.||+.++ ..+..++.++||.+.|.++|.|. .|..+....|.+
T Consensus 290 ~dYry---vW~R--D~a~~a~AL~~~G-----------~~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~------ 347 (648)
T TIGR01535 290 GGYHL---VWPR--DLYQVANAFLAAG-----------DVDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTG------ 347 (648)
T ss_pred CceEE---Eehh--hHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCC------
Confidence 55543 3663 6899999998875 45778899999999999999983 233333333221
Q ss_pred ccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcC--CCCCCCCCCCCCchhHHHHHHHHHH
Q 043885 554 NFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQR--PDGWWYGSWGVCFTYGTWFGIKGLV 631 (765)
Q Consensus 554 ~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~--~DGsW~g~wg~~~~YgT~~al~aL~ 631 (765)
---|.|+.+|.++-.+.+. +. ...-+.|+++++||.+.-. ..|-|.-+-|. ..|..+.++.||.
T Consensus 348 ---------iQlD~~g~~i~~~~~l~~~--~~--~~~~~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~ 413 (648)
T TIGR01535 348 ---------IQLDETAFPILLAYRLHRY--DH--AFYDKMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLT 413 (648)
T ss_pred ---------ccccHHHHHHHHHHHHHHc--Cc--HHHHHHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHH
Confidence 1247899998877554332 11 3355789999999998643 23666655553 2344444556776
Q ss_pred Hc
Q 043885 632 DS 633 (765)
Q Consensus 632 aa 633 (765)
++
T Consensus 414 ~A 415 (648)
T TIGR01535 414 AA 415 (648)
T ss_pred HH
Confidence 43
No 76
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=87.33 E-value=53 Score=36.47 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhheeccCCceeecc--CC------CchhHHHHHHHHHHHcCC---CCcchHHHHHHHHHHHhhcc
Q 043885 392 YKHHLARIKDYLWVAEDGMKMQAY--NG------SQLWDTAFAVHAILSTNL---VDEYGSMLKKANNYIKTTQV 455 (765)
Q Consensus 392 ~~~~l~~l~~~l~~~~dG~~~q~~--~g------s~~WDTalai~AL~~ag~---~~~~~~~l~kA~~~L~~~Q~ 455 (765)
.+++++.|.++++..+-|...... +| .+++|-++++.||+++.. .+++....+++.++|.+...
T Consensus 78 A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~ 152 (384)
T cd00249 78 AEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFW 152 (384)
T ss_pred HHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 445566666666644424332222 22 248999999999987532 23455677788888887765
No 77
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.98 E-value=11 Score=45.31 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHHhcccCCC-ccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHH
Q 043885 626 GIKGLVDSGRKYENSRSIRKACDFLLSKQLDSG-GWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTP 704 (765)
Q Consensus 626 al~aL~aaG~~~~~~~~i~rav~~Lls~Q~~DG-GWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~ 704 (765)
++.+|...|....+++.+.+-++-+.+.-..+| ||..-- .-.+..+.. ++.+=+..|.|-...+...|..+ .
T Consensus 483 sll~l~~fg~i~~~D~~~~~t~~~I~~~L~~~~~gi~RY~-~~~~d~~~~--~~~~w~i~t~Wl~~~~~~~g~~~----~ 555 (612)
T COG3387 483 SLLGLVLFGFIPPDDPRILATVEAIERELLVDGGGIRRYN-NEYDDGLGG--DNGPWIITTLWLSEYYLALGRLD----E 555 (612)
T ss_pred HHhhccccCccCCCCHHHHHHHHHHHHHHhhcCCcEEcCc-cccccccCC--CCCcceeehhHHHHHHHHccchH----H
Confidence 344555677665567777788888877777777 674321 100111111 12244577899999999998643 4
Q ss_pred HHHHHHHHHhcCcCCCCCCCCcccc
Q 043885 705 LHRAARVLINSQMENGDFPQQEIMG 729 (765)
Q Consensus 705 i~rav~~L~~~Q~~dG~w~~~~~~g 729 (765)
.++-+++|++.+.++|-++||--.+
T Consensus 556 a~~ll~~l~~~a~~~gll~EQv~~~ 580 (612)
T COG3387 556 AKKLLEWLLAFASPLGLLPEQVDDG 580 (612)
T ss_pred HHHHHHHHHHhcCCCCCcchhhcCC
Confidence 7778999999999999999885443
No 78
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=86.58 E-value=41 Score=39.63 Aligned_cols=144 Identities=13% Similarity=0.138 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhhccccCCCCCCc----cccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChH
Q 043885 440 GSMLKKANNYIKTTQVRTKSFEDPS----CWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLN 515 (765)
Q Consensus 440 ~~~l~kA~~~L~~~Q~~~~~~Gd~~----~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~ 515 (765)
.+..+...++++..|...- ...++ .....+..|||.=......+.+.| ++.=|.|+..+... .+++.-.+
T Consensus 10 ~~~~~~~~~~~l~~~~d~l-l~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~-~g~wl~a~a~~~~~----~~D~~l~~ 83 (520)
T PF07944_consen 10 KRRQELNRAYLLPLDPDRL-LYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHD-VGKWLEAAAYAYAY----TGDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHhHHHHH-hhhcCcccCCCCccccCCCCccCCCCCccCCCc-HHHHHHHHHHHHHH----CCCHHHHH
Confidence 3455666666665553210 00111 112234568887333344556655 66667666544321 24455668
Q ss_pred HHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHH
Q 043885 516 RLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIA 595 (765)
Q Consensus 516 ~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~ 595 (765)
++.+.|+.|+++|.+||-.+++.... ..++-..|.+ +...--|...++++|....+. . ..++.-+++.
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~------~~~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~-t--G~~~~L~v~~ 151 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEER------NFNPDDRWAP---DMHELYCLGKLLEGLIDYYEA-T--GNERALDVAT 151 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccccc------ccccccCCCC---CccceehHhHHHHHHHHHHHH-H--CcHHHHHHHH
Confidence 89999999999999999887765433 0112222322 111235677888888765432 1 1234567888
Q ss_pred HHHHHH
Q 043885 596 KGANFI 601 (765)
Q Consensus 596 rAv~~L 601 (765)
|.++|+
T Consensus 152 k~ad~~ 157 (520)
T PF07944_consen 152 KLADWV 157 (520)
T ss_pred HHHHHH
Confidence 999999
No 79
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=86.31 E-value=19 Score=39.68 Aligned_cols=252 Identities=13% Similarity=0.081 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhc-CCCccceeechHHHHHHHhhc--cccCCCcHHHHHHHHHHh
Q 043885 324 DMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCE-DENTQYICIAGVNKVLNMLCR--WVEDPNSEAYKHHLARIK 400 (765)
Q Consensus 324 ~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~e-de~t~y~~i~~v~~~l~ml~~--~~~~p~~~~~~~~l~~l~ 400 (765)
.+.+.++.+.+|--- -++.++.++++.... ++++ +..-.|+.+.+++.+ .-+.-..|.+......+.
T Consensus 39 GV~lyGv~~~~eAT~--------d~~yl~~l~~~~d~~i~~~g--~~~~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a 108 (357)
T COG4225 39 GVFLYGVARAYEATG--------DAEYLDYLKTWFDEQIDEGG--LPPRNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLA 108 (357)
T ss_pred cchHHHHHHHHHHcC--------cHHHHHHHHHHHHhhhccCC--CCccchhhhccCceeeehhhhhCCHHHHHHHHHHH
Confidence 455666666655211 344455555443211 2332 122225555444333 223445667777777777
Q ss_pred hhheec----cCCc-eeeccCCCchhHHHHHHHHH--HH----cCCCCcchHHHHHHHHHHHhhccccCCC-CCCccccC
Q 043885 401 DYLWVA----EDGM-KMQAYNGSQLWDTAFAVHAI--LS----TNLVDEYGSMLKKANNYIKTTQVRTKSF-EDPSCWYR 468 (765)
Q Consensus 401 ~~l~~~----~dG~-~~q~~~gs~~WDTalai~AL--~~----ag~~~~~~~~l~kA~~~L~~~Q~~~~~~-Gd~~~~~~ 468 (765)
+++... ++|+ +.-.+ .-|+|+=+|-.-.+ ++ .|-++-+.+. -++|....+...++. |=|=.-+-
T Consensus 109 ~~l~~~~Rt~eG~f~H~~~~-p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~---~~QF~~~~~~l~Dp~TGL~YH~wd 184 (357)
T COG4225 109 SWLVHEPRTKEGGFQHKVKY-PHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEA---LYQFSLHEKYLRDPETGLYYHGWD 184 (357)
T ss_pred HHHhhCcccCCCccccccCc-hhHhhhcchhhhhHHHHHHHHHhCCHHHHHHH---HHHHHHHHHHccCCCcCceEEeec
Confidence 776532 3332 22223 67999755432222 22 2333222333 335665555554432 22210011
Q ss_pred CCCCCCCCCCCCC--CCCC--ChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcc
Q 043885 469 HEFQEGWPFSSLD--NGWI--ATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYA 544 (765)
Q Consensus 469 ~~~~GgW~fs~~~--~~~p--d~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~ 544 (765)
....+-|.-...+ ..|. ... -+.+|-.++.+ +|....+...-.+.+.+-++-|++.|..+|=|-+---+.
T Consensus 185 ~~~~~~w~~~~sG~~~fWaRg~gW-~~mal~d~le~--lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~--- 258 (357)
T COG4225 185 EDGTMPWANNESGEPAFWARGNGW-YAMALADLLEL--LPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDG--- 258 (357)
T ss_pred cCCCCccccccCCCceeeecccch-HHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccC---
Confidence 1111222211111 2221 112 22333333332 332211222344678888999999999999996432210
Q ss_pred hhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCC
Q 043885 545 WMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGW 610 (765)
Q Consensus 545 ~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGs 610 (765)
--.+++|.+++++-|-++.+....++-..+..+.++||.+=|...-.++|-
T Consensus 259 ---------------~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~ 309 (357)
T COG4225 259 ---------------RPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEGE 309 (357)
T ss_pred ---------------CCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccc
Confidence 002456667777655444431111222223457899999999998887764
No 80
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.69 E-value=74 Score=35.75 Aligned_cols=222 Identities=16% Similarity=0.180 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHHcCCC---CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHH
Q 043885 420 LWDTAFAVHAILSTNLV---DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNV 496 (765)
Q Consensus 420 ~WDTalai~AL~~ag~~---~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~a 496 (765)
+=|+|+..+||..+.-. .-....-++-++||++.-..+.+ .+-|-| -.+.+..+
T Consensus 108 ~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~~------------~nNW~l-----------F~v~v~~~ 164 (361)
T PF10022_consen 108 LVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKPP------------DNNWLL-----------FRVMVEAF 164 (361)
T ss_pred HhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCCc------------cchhHH-----------HHHHHHHH
Confidence 34899999999988411 00134556778899864433211 233432 13334444
Q ss_pred HHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHH
Q 043885 497 SVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLK 576 (765)
Q Consensus 497 L~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~ 576 (765)
|.. +|.+.+.++++.+++-+.+.--.||=++ =.... -+|| | .+.+|+-..
T Consensus 165 L~~--------~G~~~d~~~i~~~l~~~e~~Y~GdGWY~-DG~~~-----------------~~DY-Y---ns~aih~y~ 214 (361)
T PF10022_consen 165 LKK--------VGEEYDEERIDYDLERIEEWYLGDGWYS-DGPEF-----------------QFDY-Y---NSWAIHPYL 214 (361)
T ss_pred HHH--------cCCCCcHHHHHHHHHHHHHHhccCCccc-cCCcc-----------------CCcc-h---HHHHHHHHH
Confidence 433 4778899999999999998877664332 11111 1232 1 244443222
Q ss_pred h-ccCcCCccchhHHHHHHHHHHHHHHHh---cCCCCCCCCCCCCCchh--HHHHHHHHHHHcCC--CCC-ChHHHHHHH
Q 043885 577 S-FTKHYPKHRRREIEEFIAKGANFIESI---QRPDGWWYGSWGVCFTY--GTWFGIKGLVDSGR--KYE-NSRSIRKAC 647 (765)
Q Consensus 577 ~-~~~~~p~~r~~~i~~~I~rAv~~L~~~---Q~~DGsW~g~wg~~~~Y--gT~~al~aL~aaG~--~~~-~~~~i~rav 647 (765)
. +.+..++...+..+...+|+.+|.... -.+||+. -.+|.+-+| ++...+.+++-++. ... +...+++++
T Consensus 215 l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~-~~~GRSltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l 293 (361)
T PF10022_consen 215 LLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAA-PPFGRSLTYRFAAFAFLAAAALAGVLPEPLISPGQVRRAL 293 (361)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-CCccccHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHH
Confidence 1 111112222123456778888887654 4689975 356766666 44444444555555 111 334555554
Q ss_pred ----HHHHhc-ccCCC-ccccccccccc----cccccCCCCCCcHHHHHHHHHHHHHhCCCCCCc
Q 043885 648 ----DFLLSK-QLDSG-GWGESYVSCVD----RVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDP 702 (765)
Q Consensus 648 ----~~Lls~-Q~~DG-GWGes~~s~~~----~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~ 702 (765)
+|..+. ..-|. ||=.-...+++ ..|. .+-+--||+.+++..+.++.+|
T Consensus 294 ~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~-------~~gSpYwa~k~Fl~L~Lp~dhp 351 (361)
T PF10022_consen 294 SRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYN-------SPGSPYWASKAFLPLGLPADHP 351 (361)
T ss_pred HHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccC-------CCCCHHHHHHHHHHhcCCCCCc
Confidence 444443 33332 44211111222 1232 2233467777777777665443
No 81
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.96 E-value=1.1e+02 Score=34.41 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccc
Q 043885 472 QEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNP 551 (765)
Q Consensus 472 ~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p 551 (765)
+.-|++.. +..-+.||+.+.| .+|+... +..=++.+.+.=++-++||.+.....-.... |+
T Consensus 95 pdyw~~~~-~~dQ~~VEaa~la-~aL~~a~----~~lW~~L~~~~k~~l~~wL~~~~~~~~~~nN--------W~----- 155 (361)
T PF10022_consen 95 PDYWGFIG-DYDQRLVEAASLA-LALLRAP----EWLWDPLDEEEKENLVDWLKQIRGIKPPDNN--------WL----- 155 (361)
T ss_pred ccccCCcc-cchhhHhHHHHHH-HHHHHCH----HHHHhhCCHHHHHHHHHHHHhcCcCCCccch--------hH-----
Confidence 45577643 3345788865544 4555442 2233466777778888999876544333221 21
Q ss_pred ccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchhHHHHHHHHH
Q 043885 552 VENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWG-VCFTYGTWFGIKGL 630 (765)
Q Consensus 552 ~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg-~~~~YgT~~al~aL 630 (765)
.| ...|-.+|..++..+. ...|+.+++-+++....|| ||++-. ..+-|=..||+.-.
T Consensus 156 --lF------------~v~v~~~L~~~G~~~d-------~~~i~~~l~~~e~~Y~GdG-WY~DG~~~~~DYYns~aih~y 213 (361)
T PF10022_consen 156 --LF------------RVMVEAFLKKVGEEYD-------EERIDYDLERIEEWYLGDG-WYSDGPEFQFDYYNSWAIHPY 213 (361)
T ss_pred --HH------------HHHHHHHHHHcCCCCc-------HHHHHHHHHHHHHHhccCC-ccccCCccCCcchHHHHHHHH
Confidence 12 4556667777765432 3678888888999888887 875422 23333234444332
Q ss_pred H-----HcCCCC--CChHHHHHHHHHHHhcc---cCCCcc
Q 043885 631 V-----DSGRKY--ENSRSIRKACDFLLSKQ---LDSGGW 660 (765)
Q Consensus 631 ~-----aaG~~~--~~~~~i~rav~~Lls~Q---~~DGGW 660 (765)
. -.+... .-....+|+.+|+.... .+||..
T Consensus 214 ~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~ 253 (361)
T PF10022_consen 214 LLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAA 253 (361)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 1 122221 12345677777776544 367763
No 82
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=93 Score=37.56 Aligned_cols=226 Identities=18% Similarity=0.221 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHH
Q 043885 440 GSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFE 519 (765)
Q Consensus 440 ~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~ 519 (765)
.+.|.++.+-|.+...++. |||+.+.. .| ++..|..|+..... .|+ ...+..
T Consensus 182 ~~~l~~~~~~l~~~~D~~~--------------GGfg~~pK---FP----~~~~l~~Llr~~~~----~~d---~~~~~~ 233 (667)
T COG1331 182 EEVLDRAAEALARSFDREY--------------GGFGSAPK---FP----PPHLLLFLLRYSLR----TGD---ERALDM 233 (667)
T ss_pred hHHHHHHHHHHHHhcchhh--------------CCcCCCCC---CC----ChHHHHHHHHHHHh----hCC---HHHHHH
Confidence 4568999999988776542 55554322 24 55677777664321 122 233333
Q ss_pred HHHHHHhcccc------CCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhHHHHH
Q 043885 520 AVNVVLSLQNS------SGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEF 593 (765)
Q Consensus 520 av~~Lls~Qn~------dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~ 593 (765)
+..-|-.|-.. .|||-.|..++ .|+ + ..|....+| -+..+.++...- ...+...+...
T Consensus 234 ~~~TL~~ma~GGIyDhlgGGF~RYStD~--~Wl--v---PHFEKMLyD------nA~l~~~y~~ay---~~tgd~~y~~~ 297 (667)
T COG1331 234 VLRTLDAMARGGIYDHLGGGFFRYSTDR--EWL--V---PHFEKMLYD------NALLLRAYAEAY---RATGDDLYRRA 297 (667)
T ss_pred HHHHHHHHHccCCccccCCceeeeecCC--cee--c---hhHHHHHHH------HHHHHHHHHHHH---HHhCCHHHHHH
Confidence 33334444332 58888776655 343 1 134444443 233333333211 11122356788
Q ss_pred HHHHHHHHHH-hcCCCCCCCCC-----CCCCchhHHHHHHHHHHHcCCCC------------------------------
Q 043885 594 IAKGANFIES-IQRPDGWWYGS-----WGVCFTYGTWFGIKGLVDSGRKY------------------------------ 637 (765)
Q Consensus 594 I~rAv~~L~~-~Q~~DGsW~g~-----wg~~~~YgT~~al~aL~aaG~~~------------------------------ 637 (765)
+..-++||.+ +..++|++|.+ +|..--|-||..-..-...|.+.
T Consensus 298 a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~ 377 (667)
T COG1331 298 AEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGNFEGRNVLHVPGPLEEA 377 (667)
T ss_pred HHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCCcCCceeecccCchhhh
Confidence 9999999866 56678888743 33211121222211111222110
Q ss_pred --CChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCc---HHHHHHHHHH
Q 043885 638 --ENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDP---TPLHRAARVL 712 (765)
Q Consensus 638 --~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~---~~i~rav~~L 712 (765)
+..+.++++.+-|+.....- ...+-.+|++ +..-++++-||+.++..-.++ +..+++++|+
T Consensus 378 ~~~~~~~l~~~r~kL~~~R~~R-----~~P~~Ddkvl---------t~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi 443 (667)
T COG1331 378 IEEAEEKLERAREKLLAAREKR-----KQPSRDDKVL---------TDWNGLMIAALAEAGRVLGDPEYLEAAERAADFI 443 (667)
T ss_pred hhhhHHHHHHHHHHHHHHHHhC-----CCCCCCccee---------eccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 01233344444444321110 1112223333 345688999999887764455 3567788999
Q ss_pred HhcCcCCCCCCC
Q 043885 713 INSQMENGDFPQ 724 (765)
Q Consensus 713 ~~~Q~~dG~w~~ 724 (765)
.+....+ ...-
T Consensus 444 ~~~l~~~-rl~~ 454 (667)
T COG1331 444 LDNLYVD-RLLR 454 (667)
T ss_pred HHhhccc-chhe
Confidence 9988777 4433
No 83
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=75.87 E-value=84 Score=34.82 Aligned_cols=226 Identities=17% Similarity=0.119 Sum_probs=118.9
Q ss_pred CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHH-HHHHHHHhccccccccCCCCChH
Q 043885 437 DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAE-GLNVSVLLSEMSYDLVGEAIPLN 515 (765)
Q Consensus 437 ~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~-aL~aL~~l~~~~~~~~g~~~~~~ 515 (765)
+++.+...+..+||...- +.++ |.+. |..+ | +. +.++||=. +..-++.+++. .+ .++
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~e-G~f~----H~~~----~--p~---Q~W~DtL~Ma~~F~ak~g~~----~~---~~e 155 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKE-GGFQ----HKVK----Y--PH---QMWLDTLYMAGLFLAKYGQV----TG---RPE 155 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCC-Cccc----cccC----c--hh---HhhhcchhhhhHHHHHHHHH----hC---CHH
Confidence 356777888888887755 4322 4432 2221 1 11 34555543 23333333332 12 234
Q ss_pred HHHHHH-HHH---HhccccC-CCc-cccccCCCcchhhcccccccccc--ccccCCccCcHHHHHHHHHhccCcCCccch
Q 043885 516 RLFEAV-NVV---LSLQNSS-GGV-ASYERTRSYAWMEMLNPVENFGE--SIIDYQYVECTSSTIQCLKSFTKHYPKHRR 587 (765)
Q Consensus 516 ~l~~av-~~L---ls~Qn~d-GGw-~~~e~~~~~~~le~l~p~e~f~~--~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~ 587 (765)
-+++++ .|. .-.|.++ |=| -+|+.+.+..|.+.. ++ +.......=.+.....+|..+-+.+| .+
T Consensus 156 ~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~------sG~~~fWaRg~gW~~mal~d~le~lp~~~~--~r 227 (357)
T COG4225 156 YFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNE------SGEPAFWARGNGWYAMALADLLELLPEDHP--DR 227 (357)
T ss_pred HHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCcccccc------CCCceeeecccchHHHHHHHHHHhCCCCCc--hH
Confidence 445543 333 3345666 444 356666555554422 12 22222211122223344444444333 24
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCC--CCC--Cc--hhHHHHHHHHHHH---cCCC-CCChHHHHHHHHHHHhcccCC
Q 043885 588 REIEEFIAKGANFIESIQRPDGWWYGS--WGV--CF--TYGTWFGIKGLVD---SGRK-YENSRSIRKACDFLLSKQLDS 657 (765)
Q Consensus 588 ~~i~~~I~rAv~~L~~~Q~~DGsW~g~--wg~--~~--~YgT~~al~aL~a---aG~~-~~~~~~i~rav~~Lls~Q~~D 657 (765)
.++.+.++.-++=|.+.|.++|-|+-- -|. ++ +.+|+...-||.. .|.- .+..+.++||.+=|+.+-.++
T Consensus 228 ~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~ 307 (357)
T COG4225 228 RELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEE 307 (357)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccc
Confidence 467888999999999999999999732 111 22 3356555556654 4543 234689999999999988876
Q ss_pred Cccccc-----c--ccccccccccCCCCCCcHHHHHHHHHHHHHh
Q 043885 658 GGWGES-----Y--VSCVDRVYTNLEGNKAHNVNTAWAMLALIEA 695 (765)
Q Consensus 658 GGWGes-----~--~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~a 695 (765)
|-=|.. + .++..+.|.+ .++.+++-+.+|.+|+.+
T Consensus 308 g~~g~vs~~~~~~~~~~g~~~~~~---~~~~~~~q~~g~g~~~la 349 (357)
T COG4225 308 GEVGGVSLGTIVGHDLDGYRDYYP---SRPTPYGQALGLGALLLA 349 (357)
T ss_pred cccceeecCccccccccccccccc---CccccCCcchhhHHHHHH
Confidence 522111 1 1222222222 456677778888887765
No 84
>PRK01631 hypothetical protein; Provisional
Probab=66.27 E-value=4.5 Score=34.80 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCCCCcccccccccccccHHHHHHHH
Q 043885 34 GTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTL 102 (765)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~al 102 (765)
-|+||.++-.++|++|-++ .|-||. . .+-.|+|-|..+.+||++.+...-
T Consensus 20 LT~eE~~Eq~~LR~eYl~~-----------fR~~~~------~--~L~~i~ivD~~G~dvTP~Klk~~q 69 (76)
T PRK01631 20 LTVDEKQEQQMLRQNYTQT-----------FRGSLD------S--ILLNTKIVDQNGLNVTPAALQDAQ 69 (76)
T ss_pred CCHHHHHHHHHHHHHHHHH-----------HHHHHH------H--HhcCceeECCCCCcCCHHHHHHHH
Confidence 4999999999999999876 233332 2 455677766669999999887753
No 85
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=62.57 E-value=26 Score=38.67 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=61.5
Q ss_pred cCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcC--CCCCCCCCC-------CCCchhHHHHHHHHHHHcCC
Q 043885 565 VECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQR--PDGWWYGSW-------GVCFTYGTWFGIKGLVDSGR 635 (765)
Q Consensus 565 ~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~--~DGsW~g~w-------g~~~~YgT~~al~aL~aaG~ 635 (765)
+-.+++.|-+++.... .. .++..+..+++++||.+... .+|+|+... .....|..+|++.||+.+..
T Consensus 20 ~~~q~R~~~~fa~a~~-~g---~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~ 95 (346)
T PF07221_consen 20 LWVQARQLYTFARAYR-LG---RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA 95 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TT---SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC
T ss_pred eeeeHHHHHHHHHHHh-cC---chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH
Confidence 4467888877765433 11 23466789999999999874 558886321 23468999999999987432
Q ss_pred CC--CChHHHHHHHHHHHhcc-cCC-Cccccc
Q 043885 636 KY--ENSRSIRKACDFLLSKQ-LDS-GGWGES 663 (765)
Q Consensus 636 ~~--~~~~~i~rav~~Lls~Q-~~D-GGWGes 663 (765)
+. +..+.++++.++|.+.- .++ ||+.+.
T Consensus 96 tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~ 127 (346)
T PF07221_consen 96 TGDPEALELAEQTLEFLERRFWDPEGGGYRES 127 (346)
T ss_dssp TT-TTHHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred hCChhHHHHHHHHHHHHHHHhcccccCcceec
Confidence 21 23466778899988874 454 555554
No 86
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=58.91 E-value=42 Score=44.75 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCccCcHHHHHHHHHhccCcCCcc--chhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC---c----hhHHHHHHHHHHH
Q 043885 562 YQYVECTSSTIQCLKSFTKHYPKH--RRREIEEFIAKGANFIESIQRPDGWWYGSWGVC---F----TYGTWFGIKGLVD 632 (765)
Q Consensus 562 ~~~~d~Ta~~l~aL~~~~~~~p~~--r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~---~----~YgT~~al~aL~a 632 (765)
|.|++-|++.+..+....+..... .....+..++.|+.=|.+.|..+|++ +-|+.. . .|..-|.+.| ..
T Consensus 1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F-~~W~~~~~~d~~ltaYa~~Fl~~A-~e 1244 (1621)
T COG2373 1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAF-GLWGGNGSGDPWLTAYAVDFLLRA-RE 1244 (1621)
T ss_pred ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCce-eecCCCCCcchhhhHHHHHHHhhh-hh
Confidence 445666766666555544332222 23446678999999999999999975 566542 2 3444455555 45
Q ss_pred cCCCCCChHHHHHHHHHHHh-cccC
Q 043885 633 SGRKYENSRSIRKACDFLLS-KQLD 656 (765)
Q Consensus 633 aG~~~~~~~~i~rav~~Lls-~Q~~ 656 (765)
.|... .+.++.++.+++++ .||+
T Consensus 1245 ~g~~v-p~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1245 QGYSV-PSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred cCcCC-CHHHHHHHHHHHHHHHhCc
Confidence 55554 68889998775544 4444
No 87
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=55.73 E-value=2.9e+02 Score=29.65 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChH
Q 043885 436 VDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLN 515 (765)
Q Consensus 436 ~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~ 515 (765)
.+++.+.++++.++|.+..... .++..+ +.....--+| ...+|-.+.+|+.+.+. .+++...+
T Consensus 100 ~~~~l~~a~~~~~~l~~~~~~~---~~~~~~-~~~~~~~~G~---------~hG~aGi~~~L~~l~~~----t~d~~~l~ 162 (321)
T cd04791 100 DPALLEAAAKIAELLAEALERG---DPALLW-PDFDRVDHGL---------LHGWAGIALFLLRLYKA----TGDSRYLE 162 (321)
T ss_pred ChHHHHHHHHHHHHHHHHhhcc---cccccc-ccCCCCCCcc---------ccCcHHHHHHHHHHHHH----HCCHHHHH
Confidence 3456677888999998765432 122111 0000001112 22355555566555432 24444556
Q ss_pred HHHHHHHHHHhccc-cCCCcc
Q 043885 516 RLFEAVNVVLSLQN-SSGGVA 535 (765)
Q Consensus 516 ~l~~av~~Lls~Qn-~dGGw~ 535 (765)
...++++++++... .++||.
T Consensus 163 ~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 163 LAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred HHHHHHHHHHHhhccCCCCce
Confidence 77788888877654 356763
No 88
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.48 E-value=1.2e+02 Score=36.53 Aligned_cols=131 Identities=17% Similarity=0.100 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCC---CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHH
Q 043885 423 TAFAVHAILSTNLV---DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVL 499 (765)
Q Consensus 423 Talai~AL~~ag~~---~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~ 499 (765)
-+++|.||+.++.. +++-..-+++.+||.+....+. ....+++-... ...-.+|=|..+.+++.
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~r----l~~~~~~G~a~---------~~g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDR----LLRRYRGGEAA---------VAGLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccc----hheeeecCccc---------ccccchhHHHHHHHHHH
Confidence 47899999988664 2345677899999999887631 11112221111 12334567777777777
Q ss_pred hccccccccCCCCChHHHHHHH----HHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHH
Q 043885 500 LSEMSYDLVGEAIPLNRLFEAV----NVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCL 575 (765)
Q Consensus 500 l~~~~~~~~g~~~~~~~l~~av----~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL 575 (765)
+-... -+.+-+..|. +.+...+.+.|||-..... +...+ +-|.+ ..|-+++...+.++.+|
T Consensus 480 lye~t-------~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~-~~~l~--ir~~~-----~~D~a~~S~na~~~~~L 544 (667)
T COG1331 480 LYEAT-------GDLAYLEKAIELADEAIADFWDDEGGFYDTPSD-SEDLL--IRPKE-----PTDGATPSGNAVAAQAL 544 (667)
T ss_pred HHHhh-------CcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCc-ccccc--cCCCC-----CCCCCCCCHHHHHHHHH
Confidence 64321 1334444443 4456667777886322211 11111 11222 33444555567777777
Q ss_pred HhccCc
Q 043885 576 KSFTKH 581 (765)
Q Consensus 576 ~~~~~~ 581 (765)
..+...
T Consensus 545 ~~Ls~l 550 (667)
T COG1331 545 LRLSLL 550 (667)
T ss_pred HHHHhh
Confidence 666543
No 89
>PRK02539 hypothetical protein; Provisional
Probab=51.40 E-value=16 Score=32.21 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCCCCcccccccccccccHHHHHHH
Q 043885 34 GTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTT 101 (765)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~a 101 (765)
-|+||.++-+++|++|-++- |-|| .. .+-.|+|-|..+.+||++.+...
T Consensus 21 LT~eEk~Eq~~LR~eYl~~f-----------R~~~------~~--~L~~i~ivD~~G~dVTP~Klk~~ 69 (85)
T PRK02539 21 LTGEEKVEQAKLREEYIEGY-----------RRSV------RH--HIEGIKIVDEEGNDVTPEKLRQV 69 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------HHHH------HH--HhccceEECCCCCCCCHHHHHHH
Confidence 49999999999999998642 2232 22 45567776666999999988764
No 90
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=51.33 E-value=3.7e+02 Score=29.54 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHH
Q 043885 490 TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTS 569 (765)
Q Consensus 490 TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta 569 (765)
.+-.+.+++.+.+..+...+.+...+...+.++.+...-..+...+. ....++
T Consensus 4 ~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~---------------------------~~G~aG 56 (343)
T cd04794 4 AAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISF---------------------------LCGNAG 56 (343)
T ss_pred hHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCc---------------------------cCCcHH
Q ss_pred HHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCC----ChHHHHH
Q 043885 570 STIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYE----NSRSIRK 645 (765)
Q Consensus 570 ~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~----~~~~i~r 645 (765)
.+...+............++..+.+.+.++-....+ .++.. ...+|++=.+.+|...-.... ....+.+
T Consensus 57 i~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~------d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~ 129 (343)
T cd04794 57 VYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPD-SGLPD------ELLYGRAGYLYALLFLNKKFGFKKIPSSLIKS 129 (343)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcc-cCCch------hhhccHHHHHHHHHHHHHHcCcCCCCHHHHHH
Q ss_pred HHHHHHhc--ccCCC---ccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCC
Q 043885 646 ACDFLLSK--QLDSG---GWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENG 720 (765)
Q Consensus 646 av~~Lls~--Q~~DG---GWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG 720 (765)
.++.++.. +..+. +|...+. ..+..|. |-.--....+++|+.+......+.-.+.++++++|+.+.+.++|
T Consensus 130 ~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~---G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g 205 (343)
T cd04794 130 ICDAILESGRTGAAKYRAPCPLMYE-WHGKEYL---GAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSG 205 (343)
T ss_pred HHHHHHHHHHHhhhccCCCCCcccc-ccCceec---chhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCC
Q ss_pred CCC
Q 043885 721 DFP 723 (765)
Q Consensus 721 ~w~ 723 (765)
.||
T Consensus 206 ~w~ 208 (343)
T cd04794 206 NFP 208 (343)
T ss_pred CCC
No 91
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=51.23 E-value=43 Score=44.67 Aligned_cols=100 Identities=19% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCChhhhHHHHHHHHHhccccccc-cCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccC
Q 043885 484 WIATDTTAEGLNVSVLLSEMSYDL-VGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDY 562 (765)
Q Consensus 484 ~pd~D~TA~aL~aL~~l~~~~~~~-~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~ 562 (765)
|.+.--|+-.++.++.+....... ....-..++++.++.=|+++|+.||+|+.|....+.
T Consensus 1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~------------------- 1227 (1621)
T COG2373 1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGSG------------------- 1227 (1621)
T ss_pred ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCCc-------------------
Confidence 344555676777777766544332 233445678999999999999999999998874221
Q ss_pred CccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHH-HHhcCC
Q 043885 563 QYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFI-ESIQRP 607 (765)
Q Consensus 563 ~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L-~~~Q~~ 607 (765)
..-+|+.++.+|...++. ++- .-+..+.++.+++ +..|++
T Consensus 1228 -d~~ltaYa~~Fl~~A~e~--g~~--vp~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1228 -DPWLTAYAVDFLLRAREQ--GYS--VPSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred -chhhhHHHHHHHhhhhhc--CcC--CCHHHHHHHHHHHHHHHhCc
Confidence 233688888888776432 111 1146677776644 444443
No 92
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=50.31 E-value=2.4e+02 Score=32.42 Aligned_cols=52 Identities=6% Similarity=-0.072 Sum_probs=30.1
Q ss_pred CChhhhHHHHHHHHHhccccccccCCCCChHH--HHHHHHHHHhccccCCCcccccc
Q 043885 485 IATDTTAEGLNVSVLLSEMSYDLVGEAIPLNR--LFEAVNVVLSLQNSSGGVASYER 539 (765)
Q Consensus 485 pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~--l~~av~~Lls~Qn~dGGw~~~e~ 539 (765)
|=.|.||..+.++..+....... .....+. |+..++|+.+.=+ .-++.-||-
T Consensus 123 ~Q~D~~gl~l~~l~~~~~~g~~~--~~~~~~~~~I~~~~~yi~~~w~-~pd~dlWEe 176 (448)
T PF00723_consen 123 PQNDGPGLRLLALWQYIDSGLQI--IYTYWEVSFIKNDLDYIERNWR-EPDFDLWEE 176 (448)
T ss_dssp -BTHHHHHHHHHHHHHHHTTHHH--HHTHHHHHTHHHHHHHHHHHTT-SBEE-TTSS
T ss_pred cCCCchHHHHHHHHHHHHcCCCc--ccccchhHHHHHHHHHHHHHcC-CcCCccccc
Confidence 66799999999998873211000 1123345 8888999876522 224555553
No 93
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=47.75 E-value=37 Score=39.95 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred CcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCC-----------CCCCC--CchhHHHHHHHHHHH
Q 043885 566 ECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWY-----------GSWGV--CFTYGTWFGIKGLVD 632 (765)
Q Consensus 566 d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~-----------g~wg~--~~~YgT~~al~aL~a 632 (765)
+.++.-|.|++.+-.. ...+++++.+++.|+.|.+.|++||-.. ..|.. ...|+....+.||.+
T Consensus 60 ~~~g~wl~a~a~~~~~---~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~ 136 (520)
T PF07944_consen 60 HDVGKWLEAAAYAYAY---TGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLID 136 (520)
T ss_pred CcHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHH
Confidence 3567778777665432 2235678899999999999999998321 12332 115666667778874
Q ss_pred ----cCCCCCChHHHHHHHHHH
Q 043885 633 ----SGRKYENSRSIRKACDFL 650 (765)
Q Consensus 633 ----aG~~~~~~~~i~rav~~L 650 (765)
.|... --+.+.|..+|+
T Consensus 137 ~y~~tG~~~-~L~v~~k~ad~~ 157 (520)
T PF07944_consen 137 YYEATGNER-ALDVATKLADWV 157 (520)
T ss_pred HHHHHCcHH-HHHHHHHHHHHH
Confidence 34431 345667888888
No 94
>PRK01546 hypothetical protein; Provisional
Probab=45.54 E-value=22 Score=30.94 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCCCCcccccccccccccHHHHHHH
Q 043885 34 GTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTT 101 (765)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~a 101 (765)
-|+||.++-+++|++|-++- |-|| .. .+-.|+|-|..+.+||++.+...
T Consensus 22 LT~eEk~Eq~~LR~eYl~~f-----------R~~~------~~--~L~~i~vvD~~G~dVTP~Klk~~ 70 (79)
T PRK01546 22 LTEEEQRERQSLREQYLKGF-----------RQNM------LN--ELKGIKVVNEQGTDVTPAKLKAL 70 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------HHHH------HH--HhccceEECCCCCCCCHHHHHHH
Confidence 49999999999999998742 2222 22 45667776666999999988764
No 95
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=42.20 E-value=68 Score=35.30 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=28.5
Q ss_pred CchhHHHHHHHHHHHcCC--CCcchHHHHHHHHHHHhhcc
Q 043885 418 SQLWDTAFAVHAILSTNL--VDEYGSMLKKANNYIKTTQV 455 (765)
Q Consensus 418 s~~WDTalai~AL~~ag~--~~~~~~~l~kA~~~L~~~Q~ 455 (765)
.+.+|.+|+++||.++.. .++....+++++++|.+.-.
T Consensus 78 ~~~Y~~af~l~ala~~~~tg~~~~~~~A~~~~~~l~~~~~ 117 (346)
T PF07221_consen 78 KDLYDQAFALLALAEARATGDPEALELAEQTLEFLERRFW 117 (346)
T ss_dssp EEHHHHHHHHHHHHHHHCTT-TTHHHHHHHHHHHHHHHTE
T ss_pred cchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Confidence 478999999999998522 23556778889999977643
No 96
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=42.02 E-value=12 Score=31.48 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCCCCcccccccccccccHHHH
Q 043885 34 GTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAV 98 (765)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 98 (765)
-|+||.++-+.+|++|-++- |-|| .. .+-.|+|-|..+.+||++.+
T Consensus 19 LT~eE~~Eq~~LR~eYl~~f-----------R~~~------~~--~L~~i~ivD~~G~dVTP~Kl 64 (65)
T PF05979_consen 19 LTEEEKAEQAELRQEYLQNF-----------RGNF------RS--QLENIKIVDPDGNDVTPEKL 64 (65)
T ss_dssp --HHHHHHHHHHHHHHHHTT-----------HHHH------HH--CSSTT---------------
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------HHHH------HH--HhcceeEECCCCCCCChhhc
Confidence 49999999999999998742 2232 22 56667776656889998865
No 97
>PLN00119 endoglucanase
Probab=39.49 E-value=4.2e+02 Score=31.16 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHH----cCCCCcchHHHHHHHHHHHhhcccc
Q 043885 420 LWDTAFAVHAILS----TNLVDEYGSMLKKANNYIKTTQVRT 457 (765)
Q Consensus 420 ~WDTalai~AL~~----ag~~~~~~~~l~kA~~~L~~~Q~~~ 457 (765)
+|.-+..|.-|.. .-.+.++.++|.+++.|.+.+..-.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~nY~~aL~~sl~Ff~aQRsG~ 50 (489)
T PLN00119 9 LWTLSICIVLLVMSMARGAVSTNYGEALTKSLLYFEAQRSGK 50 (489)
T ss_pred hhHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhHhcCCCC
Confidence 5765555444433 2234578999999999998876543
No 98
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=38.24 E-value=27 Score=42.00 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccc-cCCccccccCCccchHHHH
Q 043885 684 NTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGS-FTRNCMISYSAWRNIFPIW 749 (765)
Q Consensus 684 ~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g~-f~~~~~~~Y~~Yr~~fpl~ 749 (765)
-++++.+||..+|.. ....+..+||.+.|..+|.|-+...... ....-++.+..|.+.|||+
T Consensus 289 D~~~~~~AL~~~G~~----~~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~ 351 (612)
T COG3387 289 DASYAALALLAIGYK----KEALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVR 351 (612)
T ss_pred cHHHHHHHHHHcCCH----HHHHHHHHHHHHhhCCCCceeeEEecCCCccccccccccCCCCCCceE
Confidence 367788888888853 4578899999999999887655433333 4444466677788888763
No 99
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.20 E-value=61 Score=27.86 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCCCCcccccccccccccHHHHHHHH
Q 043885 34 GTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTL 102 (765)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~al 102 (765)
-|.||..+-+.+|++|-+- .|-| ++. .+..|+|-|..+.+||++.+.+.-
T Consensus 21 LTeeEk~eQ~~LR~eYl~~-----------fr~~------vk~--~l~~ikiiDp~GnDVTP~Klk~~q 70 (77)
T COG4224 21 LTEEEKKEQAKLRREYLES-----------FRGQ------VKN--QLENIKIIDPKGNDVTPEKLKQIQ 70 (77)
T ss_pred CCHHHHHHHHHHHHHHHHH-----------HHHH------HHH--hhcceeeeCCCCCCCChHHHHHHH
Confidence 4999999999999999762 1222 222 566777756447799999887643
No 100
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=34.52 E-value=5.3e+02 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhccccCCCc
Q 043885 515 NRLFEAVNVVLSLQNSSGGV 534 (765)
Q Consensus 515 ~~l~~av~~Lls~Qn~dGGw 534 (765)
+.++=+++||++||.++|++
T Consensus 98 de~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 98 DEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp HHHHHHHHHHHHTBSCTTEE
T ss_pred HHHHHHHHHHHhccCCCCce
Confidence 45666799999999997665
No 101
>PLN02909 Endoglucanase
Probab=34.11 E-value=4e+02 Score=31.30 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHhccccCCCcc
Q 043885 513 PLNRLFEAVNVVLSLQNSSGGVA 535 (765)
Q Consensus 513 ~~~~l~~av~~Lls~Qn~dGGw~ 535 (765)
..+.++=+++||++||..+|++-
T Consensus 122 ~ldeikw~~D~llk~~~~~~~~y 144 (486)
T PLN02909 122 VRAAIRWGTDYFLKAASRKNRLY 144 (486)
T ss_pred HHHHHHHHHHHHHHhccCCCeEE
Confidence 34566778999999999988874
No 102
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=31.83 E-value=3.2e+02 Score=30.86 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=51.2
Q ss_pred cCCCchhHHHHHHHHHHHc---CCC--CcchHHHHHHHHHHHhhccccCCCCCC-ccccCCCCCCCCC---CCCCC-CCC
Q 043885 415 YNGSQLWDTAFAVHAILST---NLV--DEYGSMLKKANNYIKTTQVRTKSFEDP-SCWYRHEFQEGWP---FSSLD-NGW 484 (765)
Q Consensus 415 ~~gs~~WDTalai~AL~~a---g~~--~~~~~~l~kA~~~L~~~Q~~~~~~Gd~-~~~~~~~~~GgW~---fs~~~-~~~ 484 (765)
+....+||++.-++||+++ |+- +|+...|.|.+..|.+...-+ |.. ..+|. ..-|.+- -.... .||
T Consensus 28 ~~~tT~wdiG~yL~al~AA~~lglIs~~e~~~Rl~~~L~tL~~lpl~~---g~lPn~~Y~-t~T~~~~~~~~~p~~~~gw 103 (367)
T PF11329_consen 28 YPSTTMWDIGSYLMALVAARELGLISREEFDQRLEKTLATLEKLPLFR---GHLPNKWYN-TQTGQPVDYGNQPGERIGW 103 (367)
T ss_pred CCccChHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCcccC---CcCccceee-cCcCcccccCCCCCccCCc
Confidence 4345789999999988876 665 456788999999998887654 443 22231 1111111 01112 567
Q ss_pred CChhhhHHHHHHHHHhc
Q 043885 485 IATDTTAEGLNVSVLLS 501 (765)
Q Consensus 485 pd~D~TA~aL~aL~~l~ 501 (765)
.-+| .+.-+.+|..+.
T Consensus 104 SavD-~GrLl~~L~il~ 119 (367)
T PF11329_consen 104 SAVD-IGRLLIALRILK 119 (367)
T ss_pred cHhh-HHHHHHHHHHHH
Confidence 6666 777777777765
No 103
>PLN02613 endoglucanase
Probab=27.63 E-value=6.2e+02 Score=29.86 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHhccccCCCc
Q 043885 513 PLNRLFEAVNVVLSLQNSSGGV 534 (765)
Q Consensus 513 ~~~~l~~av~~Lls~Qn~dGGw 534 (765)
..+.++=+++||++||..+|++
T Consensus 114 ~ldeikw~lD~llkm~~~~~~~ 135 (498)
T PLN02613 114 LRSAIRWGTDFILRAHTSPTTL 135 (498)
T ss_pred HHHHHHHHHHHHHHhccCCCeE
Confidence 3456666899999998776555
No 104
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=3.1e+02 Score=33.87 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCCcHHHHHHHHHHhhhh
Q 043885 324 DMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYL 403 (765)
Q Consensus 324 ~~~~~~l~~~~e~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~~~~~~~~l~~l~~~l 403 (765)
.++|.++..+ ..-.|-+.||..|.+-+-+++...|.|.+|+.+ +||...+ .-++.++++|-..|.+=+
T Consensus 292 AILYE~V~TI----~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL-------n~L~r~V-~~d~~avqrHr~tIleCL 359 (866)
T KOG1062|consen 292 AILYECVRTI----MDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL-------NMLLRVV-QQDPTAVQRHRSTILECL 359 (866)
T ss_pred HHHHHHHHHH----HhccCCchHHHHHHHHHHHHhcCCccceeeeeh-------hhHHhhh-cCCcHHHHHHHHHHHHHh
Confidence 4455554333 333344579999999999999999999999864 4444322 224458999998887632
Q ss_pred eeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhh
Q 043885 404 WVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTT 453 (765)
Q Consensus 404 ~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~ 453 (765)
.+.|- |=-=-|-=.+.+|... ..+...+++-++||.++
T Consensus 360 -~DpD~--------SIkrralELs~~lvn~---~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 360 -KDPDV--------SIKRRALELSYALVNE---SNVRVMVKELLEFLESS 397 (866)
T ss_pred -cCCcH--------HHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhc
Confidence 11111 1000111122333322 23467788888888776
No 105
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=23.44 E-value=1.5e+03 Score=28.15 Aligned_cols=81 Identities=10% Similarity=0.038 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHH
Q 043885 437 DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNR 516 (765)
Q Consensus 437 ~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~ 516 (765)
+.+...+.++.++|.+.+..++ +|..........||. || ++-.+.+|+.+.+. .+++...+.
T Consensus 606 ~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~~~~~~G~a-----HG------~sGi~~aL~~l~~~----~~d~~~~~~ 667 (825)
T cd04792 606 ERFLDLALKCGDHLLENASNED---GGIGPAEQPNLTGFA-----HG------ASGIAWALLRLYKV----TGDSRYLKL 667 (825)
T ss_pred hHHHHHHHHHHHHHHHhhhhcc---CCccccccccccccc-----cc------HHHHHHHHHHHHHH----cCcHHHHHH
Confidence 4456678888888887665431 221000001112332 23 33344555555432 233444556
Q ss_pred HHHHHHHHHhcccc-CCCcc
Q 043885 517 LFEAVNVVLSLQNS-SGGVA 535 (765)
Q Consensus 517 l~~av~~Lls~Qn~-dGGw~ 535 (765)
+.+++++..+.... .++|.
T Consensus 668 a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 668 AHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred HHHHHHHHHHhcCHhhcCCC
Confidence 77777777665443 35564
No 106
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=22.22 E-value=9.7e+02 Score=25.53 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHHHHHHhccCcCCccchhH
Q 043885 510 EAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRRE 589 (765)
Q Consensus 510 ~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~ 589 (765)
++...+.+.+.++.|++....+..+..|.... .......+.++-++.+|..+.+.. ..++
T Consensus 100 ~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~-----------------~~~~G~~hG~aGi~~~L~~l~~~t---~d~~ 159 (321)
T cd04791 100 DPALLEAAAKIAELLAEALERGDPALLWPDFD-----------------RVDHGLLHGWAGIALFLLRLYKAT---GDSR 159 (321)
T ss_pred ChHHHHHHHHHHHHHHHHhhccccccccccCC-----------------CCCCccccCcHHHHHHHHHHHHHH---CCHH
Confidence 44456777888898887654443333331110 001123455666666665443321 2234
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCCC
Q 043885 590 IEEFIAKGANFIESIQRP-DGWWY 612 (765)
Q Consensus 590 i~~~I~rAv~~L~~~Q~~-DGsW~ 612 (765)
+.+.+.++++++.+...+ +++|+
T Consensus 160 ~l~~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 160 YLELAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred HHHHHHHHHHHHHHhhccCCCCce
Confidence 567788888888766543 45553
No 107
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 2WCO_A 2X03_B 2WDA_A 1N7N_A 1W3Y_A 1LXK_A 1LOH_A 1OJO_A 1C82_A 1EGU_A ....
Probab=21.09 E-value=1.1e+03 Score=25.84 Aligned_cols=69 Identities=13% Similarity=-0.093 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHHHHHHhcC-CCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCChHHHHHHHHHHHhcc
Q 043885 585 HRRREIEEFIAKGANFIESIQR-PDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQ 654 (765)
Q Consensus 585 ~r~~~i~~~I~rAv~~L~~~Q~-~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~~~i~rav~~Lls~Q 654 (765)
++.+++.+.|.+|++|+.+..- +.-.++|.|--..+--.-.....|....... ..+.+.+.++.+...+
T Consensus 80 Y~n~~l~~~I~~aL~~~~~~~y~~~~~~~gNWW~~eIG~P~~l~~~liLl~d~l-~~~~~~~~~~~i~~~~ 149 (324)
T PF08124_consen 80 YQNPALLNAILKALDWWYDNDYNPSKDEYGNWWDWEIGIPQALGNILILLYDEL-PPELIAKYTAAIDRFV 149 (324)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTSSTTS-TTSSHHHHHTHHHHHHHHHHHHTGGGS-CHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccchHHHHHHHHHHccccc-CHHHHHHHHHHHHHhC
Confidence 4567788999999999987654 3334555542111111111222233333332 4667777777765543
Done!