Query 043887
Match_columns 48
No_of_seqs 111 out of 754
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.8 2.1E-21 4.6E-26 122.4 2.5 48 1-48 112-159 (159)
2 PLN02593 adrenodoxin-like ferr 99.7 1.2E-17 2.6E-22 99.5 3.5 48 1-48 70-117 (117)
3 PTZ00490 Ferredoxin superfamil 99.2 3.9E-12 8.4E-17 78.8 2.7 38 1-38 105-142 (143)
4 COG0633 Fdx Ferredoxin [Energy 98.3 2.6E-07 5.7E-12 53.7 1.8 33 1-34 69-101 (102)
5 TIGR02007 fdx_isc ferredoxin, 98.2 9E-07 2E-11 51.8 1.7 33 5-39 75-107 (110)
6 cd00207 fer2 2Fe-2S iron-sulfu 93.3 0.02 4.3E-07 30.5 -0.3 19 8-29 65-83 (84)
7 TIGR01941 nqrF NADH:ubiquinone 93.3 0.056 1.2E-06 37.0 1.8 26 7-35 99-124 (405)
8 COG2871 NqrF Na+-transporting 92.8 0.033 7.1E-07 39.5 0.1 30 7-39 104-133 (410)
9 TIGR02008 fdx_plant ferredoxin 92.7 0.056 1.2E-06 30.7 0.9 27 8-37 70-96 (97)
10 PRK05464 Na(+)-translocating N 90.4 0.19 4.2E-06 34.4 1.8 26 7-35 103-128 (409)
11 CHL00134 petF ferredoxin; Vali 87.3 0.23 5E-06 28.4 0.5 27 8-37 72-98 (99)
12 PF00111 Fer2: 2Fe-2S iron-sul 85.3 0.32 7E-06 25.7 0.4 11 11-21 68-78 (78)
13 COG3894 Uncharacterized metal- 82.9 0.57 1.2E-05 35.1 0.9 24 10-36 68-91 (614)
14 PTZ00038 ferredoxin; Provision 77.2 1.2 2.6E-05 28.9 0.9 27 8-37 162-188 (191)
15 smart00874 B5 tRNA synthetase 65.8 8.1 0.00018 20.1 2.4 28 12-39 29-56 (71)
16 PF03484 B5: tRNA synthetase B 64.5 5.6 0.00012 21.2 1.6 27 12-39 29-55 (70)
17 PLN03136 Ferredoxin; Provision 64.1 4 8.8E-05 25.3 1.1 25 9-36 122-146 (148)
18 PRK05713 hypothetical protein; 64.1 3.1 6.7E-05 27.4 0.7 22 8-32 64-85 (312)
19 PRK07609 CDP-6-deoxy-delta-3,4 58.2 5.9 0.00013 26.2 1.2 25 8-35 69-93 (339)
20 KOG1230 Protein containing rep 53.3 16 0.00035 27.1 2.8 22 7-29 226-247 (521)
21 PRK13285 flagellar assembly pr 48.5 9.4 0.0002 23.5 0.9 22 9-32 116-137 (148)
22 PF02623 FliW: FliW protein; 46.9 6.2 0.00013 23.4 -0.1 15 9-23 98-112 (121)
23 PF13085 Fer2_3: 2Fe-2S iron-s 45.7 12 0.00027 22.1 1.1 19 8-26 64-82 (110)
24 PRK13283 flagellar assembly pr 44.8 11 0.00024 23.1 0.8 15 9-23 98-112 (134)
25 KOG1765 Regulator of ribosome 44.4 24 0.00051 23.1 2.3 24 25-48 67-90 (181)
26 PF10927 DUF2738: Protein of u 43.3 26 0.00056 23.7 2.4 25 11-38 186-210 (244)
27 PRK13282 flagellar assembly pr 43.2 12 0.00026 22.7 0.8 15 9-23 97-111 (128)
28 PRK08640 sdhB succinate dehydr 39.6 9.7 0.00021 25.1 -0.0 25 6-30 73-97 (249)
29 PRK11872 antC anthranilate dio 38.8 15 0.00032 24.6 0.8 24 8-34 72-95 (340)
30 PRK12575 succinate dehydrogena 34.1 14 0.0003 24.3 0.0 24 7-30 67-90 (235)
31 COG0072 PheT Phenylalanyl-tRNA 32.0 39 0.00085 25.2 2.1 26 12-39 292-317 (650)
32 smart00240 FHA Forkhead associ 31.7 64 0.0014 15.1 2.4 32 10-43 18-50 (52)
33 PF13510 Fer2_4: 2Fe-2S iron-s 31.5 32 0.0007 18.8 1.3 16 13-31 64-79 (82)
34 PF14273 DUF4360: Domain of un 30.9 45 0.00097 21.1 2.0 27 9-35 50-77 (184)
35 COG0192 MetK S-adenosylmethion 30.8 20 0.00043 25.9 0.4 21 7-30 34-54 (388)
36 COG0479 FrdB Succinate dehydro 30.7 19 0.00041 24.1 0.3 21 6-26 63-83 (234)
37 PRK10713 2Fe-2S ferredoxin Yfa 30.4 34 0.00074 18.6 1.3 20 8-30 64-83 (84)
38 PLN00129 succinate dehydrogena 29.5 26 0.00057 23.8 0.8 25 6-30 106-131 (276)
39 PF00498 FHA: FHA domain; Int 28.3 82 0.0018 15.7 2.4 37 10-47 17-53 (68)
40 PRK07570 succinate dehydrogena 26.3 24 0.00053 23.4 0.2 22 12-33 80-101 (250)
41 PRK13284 flagellar assembly pr 25.8 59 0.0013 20.0 1.9 15 9-23 122-136 (145)
42 TIGR03274 methan_mark_7 putati 23.7 40 0.00087 23.6 0.9 29 17-45 244-277 (302)
43 TIGR02160 PA_CoA_Oxy5 phenylac 23.4 42 0.0009 22.3 0.9 20 9-30 331-350 (352)
44 PF15224 SCRG1: Scrapie-respon 23.0 28 0.00061 19.8 0.0 14 10-23 2-15 (78)
45 PRK12385 fumarate reductase ir 22.9 24 0.00051 23.1 -0.3 23 8-30 70-92 (244)
46 cd00060 FHA Forkhead associate 22.7 1.3E+02 0.0028 15.5 3.1 35 9-44 40-74 (102)
47 PF11774 Lsr2: Lsr2 ; InterPr 22.5 41 0.00089 19.8 0.7 23 18-43 7-29 (110)
48 PRK13552 frdB fumarate reducta 22.2 29 0.00062 22.7 -0.0 24 7-30 68-92 (239)
49 PF11581 Argos: Antagonist of 20.9 35 0.00075 21.2 0.1 12 8-19 76-87 (129)
50 PHA02087 hypothetical protein 20.7 1.1E+02 0.0024 17.5 2.2 19 16-35 45-63 (83)
51 PRK12577 succinate dehydrogena 20.6 31 0.00066 23.5 -0.2 17 8-24 64-80 (329)
52 PF04939 RRS1: Ribosome biogen 20.5 1.3E+02 0.0028 19.1 2.7 30 16-47 48-77 (164)
53 TIGR01750 fabZ beta-hydroxyacy 20.1 43 0.00093 19.2 0.4 22 2-23 18-39 (140)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.83 E-value=2.1e-21 Score=122.43 Aligned_cols=48 Identities=73% Similarity=1.196 Sum_probs=47.3
Q ss_pred CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeecCCccCCC
Q 043887 1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR 48 (48)
Q Consensus 1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~~~~~~ 48 (48)
|||+|++++++|||+|||.++.+||||+|+||+..+|+++||++||||
T Consensus 112 mLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph 159 (159)
T KOG3309|consen 112 MLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH 159 (159)
T ss_pred HHHhhhccccccccceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence 799999999999999999999999999999999999999999999998
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.70 E-value=1.2e-17 Score=99.51 Aligned_cols=48 Identities=81% Similarity=1.306 Sum_probs=44.9
Q ss_pred CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeecCCccCCC
Q 043887 1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR 48 (48)
Q Consensus 1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~~~~~~ 48 (48)
||+.+.++.++||||||+.++++++|++|+||++++|+++++|++|||
T Consensus 70 ~L~~~~~~~~~sRLaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~ 117 (117)
T PLN02593 70 MLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH 117 (117)
T ss_pred HHhcccCCCCCeEecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence 356677889999999999999999999999999999999999999998
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.25 E-value=3.9e-12 Score=78.80 Aligned_cols=38 Identities=39% Similarity=0.639 Sum_probs=33.7
Q ss_pred CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchhe
Q 043887 1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNF 38 (48)
Q Consensus 1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~ 38 (48)
||+.+.++.++||||||+.++++|||++|+||+++.|.
T Consensus 105 ~L~~~~~~~~gsRLaCQi~v~~~ldgl~V~vp~~~~~~ 142 (143)
T PTZ00490 105 VLAKALDVKETSRLACQVDLTPEMDGLEVELPSYVTNR 142 (143)
T ss_pred HhhccccCCCCcEEeeeEEEecCCCCEEEEeCcccccc
Confidence 46666788999999999999999999999999998763
No 4
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=98.33 E-value=2.6e-07 Score=53.71 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=28.9
Q ss_pred CcccCCCCCCCCccccceEeeCCCCCeEEEcCCc
Q 043887 1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAA 34 (48)
Q Consensus 1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~ 34 (48)
||+ ++...++|||+||+.+..+++..++.+|..
T Consensus 69 ~l~-~~~~~~~~rL~Cq~~~~~d~~i~~~~~~~~ 101 (102)
T COG0633 69 LLD-AAGLEGNSRLSCQCRVKGDLDIEVVEEPEY 101 (102)
T ss_pred HHH-hhccCCCcEEeeeeEECCCcceEEEeccCC
Confidence 344 678889999999999999999999999875
No 5
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=98.17 E-value=9e-07 Score=51.80 Aligned_cols=33 Identities=36% Similarity=0.608 Sum_probs=27.1
Q ss_pred CCCCCCCCccccceEeeCCCCCeEEEcCCcchhee
Q 043887 5 AFGLTETSHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
..++.+++|||||+.+..+ +++|++|..+.++.
T Consensus 75 ~~~~~~~~RLaCq~~~~~~--dl~v~~~~~~~~~~ 107 (110)
T TIGR02007 75 AWGLEPDSRLSCQAVVADE--DLVVEIPKYTINHA 107 (110)
T ss_pred ccCCCCCcEEeeeEEEcCC--CEEEEECchhhhhh
Confidence 4467789999999999864 89999998877654
No 6
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=93.29 E-value=0.02 Score=30.51 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.4
Q ss_pred CCCCCccccceEeeCCCCCeEE
Q 043887 8 LTETSHLGCQIVARPELDGICL 29 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V 29 (48)
..+.+||+||..+.+ +++|
T Consensus 65 ~~~~~~LaC~~~~~~---~i~v 83 (84)
T cd00207 65 AEGGYVLACQTRVTD---GLVI 83 (84)
T ss_pred HhCCeEEEEeCeeCC---CcEE
Confidence 457899999999954 4554
No 7
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.26 E-value=0.056 Score=37.02 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=20.5
Q ss_pred CCCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887 7 GLTETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
+..+++||+||..+.. +++|++|...
T Consensus 99 ~~~~g~rLaCq~~~~~---d~~i~~~~~~ 124 (405)
T TIGR01941 99 EAKEGWRLSCQVKVKQ---DMSIEIPEEI 124 (405)
T ss_pred HhcCCcEEEeeCEECC---CEEEEECccc
Confidence 4567899999998875 5789988554
No 8
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=92.76 E-value=0.033 Score=39.49 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCCCCCccccceEeeCCCCCeEEEcCCcchhee
Q 043887 7 GLTETSHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
++++.-|||||+.+..+| .+++|++-.++.
T Consensus 104 ea~eG~RLsCQ~~Vk~dm---~levpEe~fgvk 133 (410)
T COG2871 104 EAKEGWRLSCQVNVKHDM---DLEVPEEVFGVK 133 (410)
T ss_pred hhhccceEEEEecccccc---eeechHHhcCcc
Confidence 356788999999998754 699999877653
No 9
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=92.67 E-value=0.056 Score=30.69 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=21.4
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAASRN 37 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n 37 (48)
+....||+||..... .++|++|....+
T Consensus 70 ~~~g~~LaC~~~~~~---di~v~~~~~~~~ 96 (97)
T TIGR02008 70 MEAGYVLTCVAYPTS---DCTIETHKEEDL 96 (97)
T ss_pred HhCCeEEEeeCEECC---CeEEEecccccc
Confidence 445789999998764 689999987765
No 10
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=90.40 E-value=0.19 Score=34.45 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=19.7
Q ss_pred CCCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887 7 GLTETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
+..+.+||+||+.+.. +++|+++...
T Consensus 103 e~~~g~rLaCq~~~~~---d~~ie~~~~~ 128 (409)
T PRK05464 103 EAKEGWRLSCQVKVKQ---DMKIEVPEEI 128 (409)
T ss_pred hccCCcEEEeeCEECC---CEEEEECccc
Confidence 3567899999999876 4678887543
No 11
>CHL00134 petF ferredoxin; Validated
Probab=87.29 E-value=0.23 Score=28.40 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=21.5
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAASRN 37 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n 37 (48)
..+..||+||..... .++|++|..+.+
T Consensus 72 ~~~g~~L~C~~~~~~---d~~i~~~~~~~~ 98 (99)
T CHL00134 72 LEAGFVLTCVAYPTS---DCTILTHQEEEL 98 (99)
T ss_pred HhCCeEEEeeCEECC---CeEEEecccccc
Confidence 345788999999875 679999988764
No 12
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=85.30 E-value=0.32 Score=25.69 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=8.7
Q ss_pred CCccccceEee
Q 043887 11 TSHLGCQIVAR 21 (48)
Q Consensus 11 ~SRLsCQi~v~ 21 (48)
..||+||..++
T Consensus 68 ~~rLaCq~~~t 78 (78)
T PF00111_consen 68 GIRLACQTRVT 78 (78)
T ss_dssp EEEEGGGSEES
T ss_pred CCcCCcEEEeC
Confidence 45999999864
No 13
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=82.95 E-value=0.57 Score=35.11 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCCccccceEeeCCCCCeEEEcCCcch
Q 043887 10 ETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
...|||||..+. ..++|.||++++
T Consensus 68 ~g~rlac~~~v~---gd~~i~ip~es~ 91 (614)
T COG3894 68 RGYRLACQAQVL---GDLVIFIPPESR 91 (614)
T ss_pred hceeeeeehhhc---CceEEEcCchhh
Confidence 378999999986 478999999886
No 14
>PTZ00038 ferredoxin; Provisional
Probab=77.21 E-value=1.2 Score=28.89 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=21.8
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAASRN 37 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n 37 (48)
+....||+||..+.. +++|++|.....
T Consensus 162 ~~~G~~LaCqa~p~s---Di~Ie~p~e~~~ 188 (191)
T PTZ00038 162 LKKGYCLLCTCYPKS---DCTIETHKEDEL 188 (191)
T ss_pred hcCCEEEEeeCEECC---CeEEecCChHHh
Confidence 355789999999874 689999998763
No 15
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=65.83 E-value=8.1 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=20.2
Q ss_pred CccccceEeeCCCCCeEEEcCCcchhee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
.||+|.+...++-+.+.|++|.+-.++.
T Consensus 29 ~~lg~~~~~~~~~~~~~v~~P~~R~Di~ 56 (71)
T smart00874 29 KRLGFEVEVSGDDDTLEVTVPSYRFDIL 56 (71)
T ss_pred HHCCCeEEecCCCCeEEEECCCCccccC
Confidence 4789998765434579999998765544
No 16
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=64.52 E-value=5.6 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=19.1
Q ss_pred CccccceEeeCCCCCeEEEcCCcchhee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
.||+|++...+ -+.+.|.+|.+-.++.
T Consensus 29 ~~lg~~~~~~~-~~~~~v~vP~~R~Di~ 55 (70)
T PF03484_consen 29 KRLGFKVEKID-GDTLEVTVPSYRFDIE 55 (70)
T ss_dssp HHTT-EEEE-C-TTEEEEEEETTSTT-S
T ss_pred HHCCCEEEECC-CCEEEEEcCCCcCCcC
Confidence 48999999853 3699999999876654
No 17
>PLN03136 Ferredoxin; Provisional
Probab=64.13 E-value=4 Score=25.34 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=19.8
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCcch
Q 043887 9 TETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
.+.-||+||..... .++|++|.+..
T Consensus 122 ~~G~~LaC~a~p~s---D~~Ie~~~e~~ 146 (148)
T PLN03136 122 SEGYVLTCVAYPTS---DVVIETHKEEA 146 (148)
T ss_pred cCCEEEEeEeEECC---CcEEecCChhh
Confidence 46789999998875 47899988653
No 18
>PRK05713 hypothetical protein; Provisional
Probab=64.10 E-value=3.1 Score=27.40 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=17.2
Q ss_pred CCCCCccccceEeeCCCCCeEEEcC
Q 043887 8 LTETSHLGCQIVARPELDGICLALP 32 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp 32 (48)
.....||+||..+.. .++|+++
T Consensus 64 ~~~g~~L~C~~~~~~---d~~i~~~ 85 (312)
T PRK05713 64 REQGWRLACQCRVVG---DLRVEVF 85 (312)
T ss_pred HhCCeEEEeECEECC---ceEEEec
Confidence 345689999999985 5788876
No 19
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=58.18 E-value=5.9 Score=26.16 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=18.6
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
....-||+||..... .++|++|...
T Consensus 69 ~~~g~~L~C~~~~~~---d~~i~~~~~~ 93 (339)
T PRK07609 69 RAAGEALTCCAKPLS---DLVLEAREVP 93 (339)
T ss_pred HhCCcEEEeeCEECC---CEEEEecccc
Confidence 345679999999875 5788887543
No 20
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=53.29 E-value=16 Score=27.14 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=16.2
Q ss_pred CCCCCCccccceEeeCCCCCeEE
Q 043887 7 GLTETSHLGCQIVARPELDGICL 29 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V 29 (48)
+.-|+-|=+||+.++++ +||+|
T Consensus 226 ga~PtpRSGcq~~vtpq-g~i~v 247 (521)
T KOG1230|consen 226 GAGPTPRSGCQFSVTPQ-GGIVV 247 (521)
T ss_pred CCCCCCCCcceEEecCC-CcEEE
Confidence 33466777999999986 46665
No 21
>PRK13285 flagellar assembly protein FliW; Provisional
Probab=48.47 E-value=9.4 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=16.5
Q ss_pred CCCCccccceEeeCCCCCeEEEcC
Q 043887 9 TETSHLGCQIVARPELDGICLALP 32 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp 32 (48)
+..+|+++|+++.++ +..++-|
T Consensus 116 N~~~~~g~QvIl~~~--~y~~r~p 137 (148)
T PRK13285 116 NKKKRKGKQVILDNE--KYSTKHP 137 (148)
T ss_pred ECCCCEEEEEEeCCC--CCccccc
Confidence 567899999999875 5555544
No 22
>PF02623 FliW: FliW protein; InterPro: IPR003775 The protein BSU35380 from Bacillus subtilis (renamed FliW) was characterised as being a flagellar assembly factor and is involved in Bacterial flagellum biogenesis. Experimental characterisation was also carried out in Treponema pallidum (TP0658). In Campylobacter jejuni, Cj1075 has been shown to be involved in motility and flagellin biosynthesis. The two paralogs in Helicobacter pylori 26695 (HP1154 and HP1377) were found to be able to bind to flagellin. For additional reading see [, , ].; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2AJ7_A.
Probab=46.93 E-value=6.2 Score=23.44 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=8.9
Q ss_pred CCCCccccceEeeCC
Q 043887 9 TETSHLGCQIVARPE 23 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ 23 (48)
+..+|+|+|+++.++
T Consensus 98 N~~~~~g~QvIl~~~ 112 (121)
T PF02623_consen 98 NPENRLGKQVILDDD 112 (121)
T ss_dssp ETTTTEEEE---SS-
T ss_pred ECcCCEEEEEEECCC
Confidence 467999999999654
No 23
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=45.72 E-value=12 Score=22.12 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCCCCccccceEeeCCCCC
Q 043887 8 LTETSHLGCQIVARPELDG 26 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldG 26 (48)
.+-..||||+..+.+..++
T Consensus 64 ING~~~LAC~t~v~~~~~~ 82 (110)
T PF13085_consen 64 INGRPRLACKTQVDDLIEK 82 (110)
T ss_dssp ETTEEEEGGGSBGGGCTTS
T ss_pred ECCceecceeeEchhccCC
Confidence 4556799999999987655
No 24
>PRK13283 flagellar assembly protein FliW; Provisional
Probab=44.83 E-value=11 Score=23.12 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=12.1
Q ss_pred CCCCccccceEeeCC
Q 043887 9 TETSHLGCQIVARPE 23 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ 23 (48)
+...|+|||+++.++
T Consensus 98 N~~~~~g~QvIL~~~ 112 (134)
T PRK13283 98 NSKNGFAAQVALSMM 112 (134)
T ss_pred ECCCCEEEEEEECCC
Confidence 457899999999864
No 25
>KOG1765 consensus Regulator of ribosome synthesis [Translation, ribosomal structure and biogenesis]
Probab=44.38 E-value=24 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.677 Sum_probs=20.5
Q ss_pred CCeEEEcCCcchheeecCCccCCC
Q 043887 25 DGICLALPAASRNFAVDGYVPKPR 48 (48)
Q Consensus 25 dGl~V~vp~~~~n~~~~~~~~~~~ 48 (48)
+|++|++|+.+..+-.+.+-|+|+
T Consensus 67 e~vv~qLPe~Tt~LPReK~lPr~k 90 (181)
T KOG1765|consen 67 EGVVVQLPEPTTRLPREKPLPRPK 90 (181)
T ss_pred cceeEeCCCccccCccccCCCCCC
Confidence 599999999999888887777764
No 26
>PF10927 DUF2738: Protein of unknown function (DUF2738); InterPro: IPR024416 This is a family of plant and viral proteins whose function is unknown.
Probab=43.29 E-value=26 Score=23.68 Aligned_cols=25 Identities=4% Similarity=-0.032 Sum_probs=17.4
Q ss_pred CCccccceEeeCCCCCeEEEcCCcchhe
Q 043887 11 TSHLGCQIVARPELDGICLALPAASRNF 38 (48)
Q Consensus 11 ~SRLsCQi~v~~~ldGl~V~vp~~~~n~ 38 (48)
+++.||||++.+ +++++.-.+.+..
T Consensus 186 g~K~s~Q~KL~~---~vv~E~~~~~~~~ 210 (244)
T PF10927_consen 186 GAKFSLQWKLYQ---AVVVEPIDEAKPR 210 (244)
T ss_pred CCceeeEEEEEE---EEEeeehhccccc
Confidence 799999999986 5665654444433
No 27
>PRK13282 flagellar assembly protein FliW; Provisional
Probab=43.17 E-value=12 Score=22.72 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=12.0
Q ss_pred CCCCccccceEeeCC
Q 043887 9 TETSHLGCQIVARPE 23 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ 23 (48)
+..+|+|||+++.++
T Consensus 97 N~~~~~g~QvIL~~~ 111 (128)
T PRK13282 97 NLDNNTMGQVVLDSV 111 (128)
T ss_pred ECCCCEEEEEeeCCC
Confidence 457899999998763
No 28
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=39.59 E-value=9.7 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=16.6
Q ss_pred CCCCCCCccccceEeeCCCCCeEEE
Q 043887 6 FGLTETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 6 ~~~~~~SRLsCQi~v~~~ldGl~V~ 30 (48)
...+...||||+..+.+--++++|+
T Consensus 73 m~ING~p~LAC~t~v~~~~~~i~ie 97 (249)
T PRK08640 73 MVINGKPRQACTALIDQLEQPIRLE 97 (249)
T ss_pred eEECCccchhhhChHHHcCCcEEEE
Confidence 3456678999999995422455555
No 29
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=38.77 E-value=15 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=17.2
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCc
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAA 34 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~ 34 (48)
.....||+||..... .++|++|..
T Consensus 72 ~~~g~~L~C~~~~~~---d~~i~~~~~ 95 (340)
T PRK11872 72 LAQRKMLACQTRVKS---DAAFYFDFD 95 (340)
T ss_pred HhCCeEEEeeCEECC---ceEEEecCc
Confidence 345778999998876 457776643
No 30
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=34.12 E-value=14 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=16.9
Q ss_pred CCCCCCccccceEeeCCCCCeEEE
Q 043887 7 GLTETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V~ 30 (48)
..+...||||+..+.+--++++|+
T Consensus 67 ~iNG~~~LaC~t~~~~~~~~i~ie 90 (235)
T PRK12575 67 NINGRNGLACLTNMQALPREIVLR 90 (235)
T ss_pred EECCeEcchhhCcHhHcCCCEEEe
Confidence 355678999999997533456655
No 31
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=31.98 E-value=39 Score=25.21 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=21.6
Q ss_pred CccccceEeeCCCCCeEEEcCCcchhee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
.||+|++....+ |+.|.+|.+-.++.
T Consensus 292 ~rLg~~~~~~~~--~~~V~vPs~R~DI~ 317 (650)
T COG0072 292 KRLGFKVEVKGD--GLTVTVPSYRVDIL 317 (650)
T ss_pred HHcCCeeEecCC--cEEEeCCCCccccc
Confidence 589999998876 89999999776654
No 32
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=31.67 E-value=64 Score=15.07 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=19.2
Q ss_pred CCCccccceEeeCCCCC-eEEEcCCcchheeecCC
Q 043887 10 ETSHLGCQIVARPELDG-ICLALPAASRNFAVDGY 43 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldG-l~V~vp~~~~n~~~~~~ 43 (48)
.-||.-|.|.+.++ | +.++--....-.+++|.
T Consensus 18 ~vs~~H~~i~~~~~--~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 18 SISRRHAEIVYDGG--GRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CcchhHcEEEECCC--CeEEEEECCCCCCeeECCE
Confidence 37888888888765 5 55444443444455543
No 33
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=31.49 E-value=32 Score=18.77 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=9.4
Q ss_pred ccccceEeeCCCCCeEEEc
Q 043887 13 HLGCQIVARPELDGICLAL 31 (48)
Q Consensus 13 RLsCQi~v~~~ldGl~V~v 31 (48)
..||+..+.+ ||+|+.
T Consensus 64 v~AC~t~v~~---GM~V~T 79 (82)
T PF13510_consen 64 VRACSTPVED---GMVVET 79 (82)
T ss_dssp EETTT-B--T---TEEEE-
T ss_pred eEcccCCCcC---CcEEEE
Confidence 4799999876 788763
No 34
>PF14273 DUF4360: Domain of unknown function (DUF4360)
Probab=30.87 E-value=45 Score=21.08 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=18.4
Q ss_pred CCCCccccceEeeCCC-CCeEEEcCCcc
Q 043887 9 TETSHLGCQIVARPEL-DGICLALPAAS 35 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~l-dGl~V~vp~~~ 35 (48)
...+|..||+.+.-.. .|+.+.|....
T Consensus 50 ~~~~rknCql~l~v~~p~G~q~av~~~d 77 (184)
T PF14273_consen 50 ATDSRKNCQLNLQVQVPQGWQFAVASAD 77 (184)
T ss_pred CccCcccceEEEEEecCCCeEEEEEEEE
Confidence 3589999999876443 27777665533
No 35
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=30.75 E-value=20 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCCCCCccccceEeeCCCCCeEEE
Q 043887 7 GLTETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V~ 30 (48)
.-.|+||.||-..++. |+++-
T Consensus 34 ~~Dp~srVAcEt~v~t---g~v~i 54 (388)
T COG0192 34 KQDPNSRVACETLVTT---GLVVI 54 (388)
T ss_pred hcCCCceEEEEEEEec---CeEEE
Confidence 3468999999999997 55554
No 36
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=30.72 E-value=19 Score=24.06 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=16.6
Q ss_pred CCCCCCCccccceEeeCCCCC
Q 043887 6 FGLTETSHLGCQIVARPELDG 26 (48)
Q Consensus 6 ~~~~~~SRLsCQi~v~~~ldG 26 (48)
...+-..||||+..+.+-.+|
T Consensus 63 m~ING~prLAC~t~~~~~~~~ 83 (234)
T COG0479 63 MNINGKPRLACKTLMKDLEEG 83 (234)
T ss_pred eEECCccccchhchhhhccCC
Confidence 345678899999999886665
No 37
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=30.38 E-value=34 Score=18.62 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=14.2
Q ss_pred CCCCCccccceEeeCCCCCeEEE
Q 043887 8 LTETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~ 30 (48)
..+..+|+||.....+ ++|+
T Consensus 64 ~~~g~~L~C~~~p~sd---~~ie 83 (84)
T PRK10713 64 IQPGEILPCCCRAKGD---IEIE 83 (84)
T ss_pred hhCCEEEEeeCEECCC---EEEe
Confidence 4556799999987754 5555
No 38
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=29.49 E-value=26 Score=23.75 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=16.7
Q ss_pred CCCCCCCccccceEeeCCC-CCeEEE
Q 043887 6 FGLTETSHLGCQIVARPEL-DGICLA 30 (48)
Q Consensus 6 ~~~~~~SRLsCQi~v~~~l-dGl~V~ 30 (48)
...+-..||+|+..+.+.. +.++|+
T Consensus 106 m~ING~p~LAC~t~v~~~~~~~i~ie 131 (276)
T PLN00129 106 MNIDGKNTLACLTKIDRDESGPTTIT 131 (276)
T ss_pred eEECCcccccccccHhhcCCCcEEEE
Confidence 3456678999999997653 234443
No 39
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=28.27 E-value=82 Score=15.66 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=24.2
Q ss_pred CCCccccceEeeCCCCCeEEEcCCcchheeecCCccCC
Q 043887 10 ETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~~~~~ 47 (48)
.-||.=|.|...++ ..+.++--....-.+++|....+
T Consensus 17 ~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~ 53 (68)
T PF00498_consen 17 SISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGP 53 (68)
T ss_dssp TSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESS
T ss_pred heeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCC
Confidence 37888899988875 35555554556666777766543
No 40
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=26.29 E-value=24 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=13.3
Q ss_pred CccccceEeeCCCCCeEEEcCC
Q 043887 12 SHLGCQIVARPELDGICLALPA 33 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~ 33 (48)
.||||+..+.+--+|-+|+|-+
T Consensus 80 ~~LAC~t~~~~~~~~~~i~ieP 101 (250)
T PRK07570 80 GTTTCQLHMRSFKDGDTITIEP 101 (250)
T ss_pred ccchhhhhhhhcCCCCeEEEEE
Confidence 3999999886533333444433
No 41
>PRK13284 flagellar assembly protein FliW; Provisional
Probab=25.80 E-value=59 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.084 Sum_probs=12.1
Q ss_pred CCCCccccceEeeCC
Q 043887 9 TETSHLGCQIVARPE 23 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ 23 (48)
+..+|+|+|+++.+.
T Consensus 122 N~~~~~g~QvIL~~~ 136 (145)
T PRK13284 122 NPISRRGLQKVITGL 136 (145)
T ss_pred ECCCCEEEEEEEcCC
Confidence 457899999999765
No 42
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.72 E-value=40 Score=23.63 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=21.0
Q ss_pred ceEeeCCCCCeEEEcC-----CcchheeecCCcc
Q 043887 17 QIVARPELDGICLALP-----AASRNFAVDGYVP 45 (48)
Q Consensus 17 Qi~v~~~ldGl~V~vp-----~~~~n~~~~~~~~ 45 (48)
...++-.|||+.|.+| +.-.|..++|+++
T Consensus 244 P~Pit~QldGlRvKl~YD~y~e~i~~v~i~g~~l 277 (302)
T TIGR03274 244 PMPIVLQLDGVRVKLPYDEYAEEIAEVEVEGYRL 277 (302)
T ss_pred CCceeEeccceEEecCchhHHHHHhheEEccEEh
Confidence 4456677999999999 3445777777664
No 43
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.40 E-value=42 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=14.2
Q ss_pred CCCCccccceEeeCCCCCeEEE
Q 043887 9 TETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~ 30 (48)
....||+||.....+ .++|.
T Consensus 331 ~~g~~l~C~~~~~~~--~~~~~ 350 (352)
T TIGR02160 331 DAGYVLTCQAYPLSD--KLVVD 350 (352)
T ss_pred hCCcEEEeeEEECCC--cEEEe
Confidence 456799999988654 56654
No 44
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=22.95 E-value=28 Score=19.81 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=9.9
Q ss_pred CCCccccceEeeCC
Q 043887 10 ETSHLGCQIVARPE 23 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ 23 (48)
+.+||||--++-.+
T Consensus 2 ps~RlsCyrk~L~D 15 (78)
T PF15224_consen 2 PSNRLSCYRKILKD 15 (78)
T ss_pred CccchhHHHHHhcc
Confidence 57899997665544
No 45
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=22.87 E-value=24 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=16.5
Q ss_pred CCCCCccccceEeeCCCCCeEEE
Q 043887 8 LTETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~ 30 (48)
.+...||||+..+.+--+|++|+
T Consensus 70 InG~~~laC~t~~~~~~~~~~ie 92 (244)
T PRK12385 70 VNNVPKLACKTFLRDYTGGMKVE 92 (244)
T ss_pred ECccChhhHhhHHHHcCCCeEEe
Confidence 34456999999987743577776
No 46
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=22.72 E-value=1.3e+02 Score=15.55 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCcchheeecCCc
Q 043887 9 TETSHLGCQIVARPELDGICLALPAASRNFAVDGYV 44 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~~ 44 (48)
..-||.-|.|...++ +++.+.-.....-.++++..
T Consensus 40 ~~iS~~H~~i~~~~~-~~~~~~~~~s~~g~~vn~~~ 74 (102)
T cd00060 40 PSVSRRHAVIRYDGD-GGVVLIDLGSTNGTFVNGQR 74 (102)
T ss_pred CCeeCcceEEEEcCC-CCEEEEECCCCCCeEECCEE
Confidence 346888899988874 36666655555555666544
No 47
>PF11774 Lsr2: Lsr2 ; InterPro: IPR024412 This entry represents Lsr2, which is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homologue of the H-NS-like proteins []. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression [, ].; PDB: 4E1R_B 4E1P_B 2KNG_A.
Probab=22.52 E-value=41 Score=19.82 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=12.7
Q ss_pred eEeeCCCCCeEEEcCCcchheeecCC
Q 043887 18 IVARPELDGICLALPAASRNFAVDGY 43 (48)
Q Consensus 18 i~v~~~ldGl~V~vp~~~~n~~~~~~ 43 (48)
+.+-+++|| ...+++..|.+||.
T Consensus 7 v~l~DDlDG---~~a~etv~F~ldG~ 29 (110)
T PF11774_consen 7 VQLVDDLDG---SEADETVRFGLDGV 29 (110)
T ss_dssp ---B-TTTS---SB-SEEEEEEETTE
T ss_pred EEEEeCCCC---CccceEEEEEECCe
Confidence 456788888 44557777777764
No 48
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=22.24 E-value=29 Score=22.71 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCCCCCccccceEeeCCCC-CeEEE
Q 043887 7 GLTETSHLGCQIVARPELD-GICLA 30 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ld-Gl~V~ 30 (48)
..+...||||+..+.+--+ +++|+
T Consensus 68 ~ING~~~LAC~t~v~~~~~~~i~ie 92 (239)
T PRK13552 68 VINGRPTLACRTLTSDYPDGVITLM 92 (239)
T ss_pred EECCeEhhhhhccHhhcCCCcEEEE
Confidence 3456779999999876322 45554
No 49
>PF11581 Argos: Antagonist of EGFR signalling, Argos; InterPro: IPR021633 Argos is a natural secreted antagonist of EGFR signalling which functions by binding growth factor ligands that activate EGFR by forming a clamp like structure using three disulphide-bonded beta-sheet domains []. ; PDB: 3CGU_A 3C9A_A.
Probab=20.94 E-value=35 Score=21.20 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=5.4
Q ss_pred CCCCCccccceE
Q 043887 8 LTETSHLGCQIV 19 (48)
Q Consensus 8 ~~~~SRLsCQi~ 19 (48)
-.+.|||-||-+
T Consensus 76 CSP~srlRCqrK 87 (129)
T PF11581_consen 76 CSPQSRLRCQRK 87 (129)
T ss_dssp EEESS--B--TT
T ss_pred cChhhhhhhccc
Confidence 357899999954
No 50
>PHA02087 hypothetical protein
Probab=20.71 E-value=1.1e+02 Score=17.46 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=13.5
Q ss_pred cceEeeCCCCCeEEEcCCcc
Q 043887 16 CQIVARPELDGICLALPAAS 35 (48)
Q Consensus 16 CQi~v~~~ldGl~V~vp~~~ 35 (48)
-|..+-+. ||.++++|++.
T Consensus 45 v~y~lvds-dg~~ielpe~~ 63 (83)
T PHA02087 45 VQYMLVDS-DGVKIELPESE 63 (83)
T ss_pred eeEEEEcC-CCcEEECCccc
Confidence 35555443 79999999875
No 51
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=20.58 E-value=31 Score=23.50 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=12.6
Q ss_pred CCCCCccccceEeeCCC
Q 043887 8 LTETSHLGCQIVARPEL 24 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~l 24 (48)
.+-..+|||+..+.+.+
T Consensus 64 inG~~~laC~t~v~~~~ 80 (329)
T PRK12577 64 INGRSALACKENVGSEL 80 (329)
T ss_pred ECCeeecCcccchhhhh
Confidence 44557899999987654
No 52
>PF04939 RRS1: Ribosome biogenesis regulatory protein (RRS1); InterPro: IPR007023 This is a family of eukaryotic ribosomal biogenesis regulatory proteins.; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=20.54 E-value=1.3e+02 Score=19.10 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=19.0
Q ss_pred cceEeeCCCCCeEEEcCCcchheeecCCccCC
Q 043887 16 CQIVARPELDGICLALPAASRNFAVDGYVPKP 47 (48)
Q Consensus 16 CQi~v~~~ldGl~V~vp~~~~n~~~~~~~~~~ 47 (48)
+.+..++ +|+++.+|+...-+-.+.-.|+|
T Consensus 48 Lp~~~~~--~g~~~~LP~p~t~LPReKplPk~ 77 (164)
T PF04939_consen 48 LPTERTE--DGVLAKLPEPTTRLPREKPLPKP 77 (164)
T ss_pred CCceecC--CCeEEECCCCCccCcccCCCCCC
Confidence 3444443 59999999988765554444443
No 53
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=20.11 E-value=43 Score=19.20 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=9.6
Q ss_pred cccCCCCCCCCccccceEeeCC
Q 043887 2 LDLAFGLTETSHLGCQIVARPE 23 (48)
Q Consensus 2 Ld~a~~~~~~SRLsCQi~v~~~ 23 (48)
+|...+..+..+..|+..++.+
T Consensus 18 vD~i~~~~~~~~~~~~~~v~~~ 39 (140)
T TIGR01750 18 VDRILELDPGKRIVAIKNVTIN 39 (140)
T ss_pred EEEEEEEcCCCEEEEEEEcCCC
Confidence 3333333333444555555443
Done!