Query 043887
Match_columns 48
No_of_seqs 111 out of 754
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9z_C Adrenodoxin; cytochrome 99.2 9.7E-13 3.3E-17 77.9 -0.3 41 1-41 76-116 (123)
2 3hui_A Ferredoxin; cytochrome 99.0 6.4E-11 2.2E-15 70.3 1.4 35 2-36 92-126 (126)
3 3lxf_A Ferredoxin; iron, iron- 98.9 1.3E-10 4.3E-15 66.4 0.7 34 2-35 71-104 (104)
4 2y5c_A Adrenodoxin-like protei 98.9 2.6E-10 9.1E-15 64.9 0.8 35 2-36 75-109 (109)
5 2bt6_A Adrenodoxin 1; rutheniu 98.9 3.6E-10 1.2E-14 64.1 1.1 31 2-32 78-108 (108)
6 1uwm_A Ferredoxin VI, FDVI; el 98.6 7.8E-09 2.7E-13 58.3 1.4 34 2-35 71-105 (106)
7 1xlq_A Putidaredoxin, PDX; [2F 98.6 1.1E-08 3.8E-13 57.6 1.3 33 3-35 72-105 (106)
8 1b9r_A Protein (terpredoxin); 98.6 1.7E-08 5.7E-13 56.8 2.0 30 5-34 75-104 (105)
9 2wlb_A ETP1-FD, electron trans 98.6 1.2E-08 4.2E-13 57.2 1.0 31 2-32 73-103 (103)
10 3ah7_A [2Fe-2S]ferredoxin; [2F 98.5 3.8E-08 1.3E-12 56.1 1.8 37 5-43 76-112 (113)
11 1l5p_A Ferredoxin; [2Fe-2S] cl 98.2 2.6E-07 8.8E-12 51.2 0.8 25 7-31 69-93 (93)
12 1i7h_A Ferredoxin; 2Fe-2S,elec 98.2 5.2E-07 1.8E-11 51.2 1.6 35 5-41 76-110 (111)
13 1a70_A Ferredoxin; iron-sulfur 96.7 0.00079 2.7E-08 37.1 2.1 26 10-38 71-96 (97)
14 1awd_A Ferredoxin; electron tr 96.5 0.0014 4.9E-08 35.7 2.3 25 9-36 68-92 (94)
15 1czp_A Ferredoxin I; [2Fe-2S] 96.4 0.0017 5.7E-08 35.7 2.3 24 10-36 73-96 (98)
16 1wri_A Ferredoxin II, ferredox 96.4 0.0017 5.8E-08 35.4 2.0 24 9-35 68-91 (93)
17 1iue_A Ferredoxin; electron tr 96.3 0.0012 4E-08 36.4 1.2 26 9-37 70-95 (98)
18 1frr_A Ferredoxin I; electron 96.2 0.0028 9.6E-08 34.3 2.2 25 9-36 69-93 (95)
19 1frd_A Heterocyst [2Fe-2S] fer 96.0 0.0038 1.3E-07 34.1 2.2 24 10-36 73-96 (98)
20 1jq4_A Methane monooxygenase c 95.3 0.0054 1.9E-07 33.5 1.2 21 11-34 77-97 (98)
21 1doi_A 2Fe-2S ferredoxin; halo 94.6 0.0062 2.1E-07 35.6 0.1 30 8-39 94-123 (128)
22 1krh_A Benzoate 1,2-dioxygenas 93.9 0.024 8.2E-07 36.0 1.7 23 9-34 76-98 (338)
23 3zyy_X Iron-sulfur cluster bin 90.1 0.16 5.5E-06 36.7 2.3 26 8-36 69-94 (631)
24 2pia_A Phthalate dioxygenase r 51.8 7.3 0.00025 24.5 1.8 19 10-30 302-320 (321)
25 3l4g_B Phenylalanyl-tRNA synth 38.6 18 0.0006 25.4 2.2 29 12-40 332-360 (589)
26 1kf6_B Fumarate reductase iron 37.5 12 0.00042 22.6 1.1 20 11-30 72-91 (243)
27 2cxi_A Phenylalanyl-tRNA synth 30.4 29 0.001 22.8 2.1 26 12-39 308-333 (348)
28 1xao_A YDJ1, mitochondrial pro 27.8 42 0.0015 18.7 2.3 21 13-34 21-43 (121)
29 3pco_B Phenylalanyl-tRNA synth 23.5 38 0.0013 24.8 1.8 27 12-40 431-457 (795)
30 4a0e_A YSCD, type III secretio 23.4 54 0.0019 19.0 2.2 29 10-43 43-72 (123)
31 2rhq_B Phenylalanyl-tRNA synth 20.0 45 0.0015 24.4 1.6 26 12-39 434-459 (795)
No 1
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.21 E-value=9.7e-13 Score=77.85 Aligned_cols=41 Identities=39% Similarity=0.713 Sum_probs=6.3
Q ss_pred CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeec
Q 043887 1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVD 41 (48)
Q Consensus 1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~ 41 (48)
||+.++++.++||||||+.++++|||++|+||...+++...
T Consensus 76 ~L~~~~~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~~~~~ 116 (123)
T 3n9z_C 76 MLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQS 116 (123)
T ss_dssp HHCC--------CBCC-------------------------
T ss_pred hhcccccccCCeEEeeEeEEccCCCCEEEEECcccccccee
Confidence 35667788999999999999999999999999999877643
No 2
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.01 E-value=6.4e-11 Score=70.32 Aligned_cols=35 Identities=37% Similarity=0.708 Sum_probs=30.8
Q ss_pred cccCCCCCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887 2 LDLAFGLTETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
|+.+.++.+++|||||+.+..+|||++|+||+.++
T Consensus 92 L~~~~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 92 LDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp HTTSSSCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred cCchhhccCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence 44467788999999999999999999999999874
No 3
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=98.94 E-value=1.3e-10 Score=66.38 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=29.5
Q ss_pred cccCCCCCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887 2 LDLAFGLTETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
|+.+.++.+++|||||+.+..+|||++|+||+.+
T Consensus 71 L~~~~~~~~g~rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 71 LDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp HHTSTTCCTTEEEGGGCBCCGGGTTCEEEECCCC
T ss_pred hccccccCCCcEEEeeCEEccCCCCEEEEecCCC
Confidence 3445678899999999999999999999999864
No 4
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=98.89 E-value=2.6e-10 Score=64.90 Aligned_cols=35 Identities=54% Similarity=0.831 Sum_probs=29.8
Q ss_pred cccCCCCCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887 2 LDLAFGLTETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
|+.+.+..+++|||||+.+..++||++|++|+.++
T Consensus 75 L~~~~~~~~g~rLaCq~~~~~d~~~~~v~ip~~~~ 109 (109)
T 2y5c_A 75 LDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109 (109)
T ss_dssp HHTSTTCCTTEEEGGGCBCCGGGTTCEEECCSCCC
T ss_pred HhccccCCCCcEeeEEeEEecCCCeEEEEecCCCC
Confidence 33356788999999999999999999999998653
No 5
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=98.88 E-value=3.6e-10 Score=64.12 Aligned_cols=31 Identities=48% Similarity=0.923 Sum_probs=27.5
Q ss_pred cccCCCCCCCCccccceEeeCCCCCeEEEcC
Q 043887 2 LDLAFGLTETSHLGCQIVARPELDGICLALP 32 (48)
Q Consensus 2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp 32 (48)
|+.+.++.++||||||+.+.+++||++|+||
T Consensus 78 L~~~~~~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 78 LDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp HTTCTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred HhCcccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence 4445778899999999999999999999997
No 6
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=98.63 E-value=7.8e-09 Score=58.27 Aligned_cols=34 Identities=38% Similarity=0.658 Sum_probs=28.6
Q ss_pred cccCCCCC-CCCccccceEeeCCCCCeEEEcCCcc
Q 043887 2 LDLAFGLT-ETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 2 Ld~a~~~~-~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
|+.+.++. +++||+||+.+..+++|++|++|+.+
T Consensus 71 L~~~~~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 71 IDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp HTTSSSCCTTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred hcCccccCCCCcEecccCEEccCCCCEEEEecCCC
Confidence 33344677 89999999999999999999999865
No 7
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=98.59 E-value=1.1e-08 Score=57.62 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=27.8
Q ss_pred ccCCCC-CCCCccccceEeeCCCCCeEEEcCCcc
Q 043887 3 DLAFGL-TETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 3 d~a~~~-~~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
+.+.+. .+++||+||+.+..+++|++|++|+.+
T Consensus 72 ~~~~~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 72 ESVTAELKPNSRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp TTCSSCCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred hcccccCCCCcEeeeeeEeecCCCCEEEEecCcc
Confidence 333446 789999999999999999999999865
No 8
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=98.59 E-value=1.7e-08 Score=56.82 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=27.0
Q ss_pred CCCCCCCCccccceEeeCCCCCeEEEcCCc
Q 043887 5 AFGLTETSHLGCQIVARPELDGICLALPAA 34 (48)
Q Consensus 5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~ 34 (48)
+.++.+++||+||+.+..+++|++|++|+.
T Consensus 75 ~~~~~~g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 75 GEPMTAGTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp CCCCCTTBSCGGGCCCCTTSTTEEEECCSC
T ss_pred cccCCCCcEeeeeCEecCCCCcEEEEecCC
Confidence 467788999999999999999999999964
No 9
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=98.57 E-value=1.2e-08 Score=57.20 Aligned_cols=31 Identities=65% Similarity=1.133 Sum_probs=26.7
Q ss_pred cccCCCCCCCCccccceEeeCCCCCeEEEcC
Q 043887 2 LDLAFGLTETSHLGCQIVARPELDGICLALP 32 (48)
Q Consensus 2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp 32 (48)
|+.+.+..+++||+||+.+..++||++|++|
T Consensus 73 L~~~~~~~~g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 73 LDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp HTTBTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred HhcccCCCCCcEeeEeeEeCCCCCcEEEEcC
Confidence 3444567889999999999999999999997
No 10
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=98.50 E-value=3.8e-08 Score=56.07 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=29.9
Q ss_pred CCCCCCCCccccceEeeCCCCCeEEEcCCcchheeecCC
Q 043887 5 AFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGY 43 (48)
Q Consensus 5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~ 43 (48)
+++..+++||+||+.+.++ +++|++|..+.|.+.||+
T Consensus 76 ~~~~~~g~rLaCq~~~~~~--dl~v~~~~~~~~~~~~~~ 112 (113)
T 3ah7_A 76 AWGLEAQSRLGCQVFVADE--DLTIEIPKYSLNHAAEAP 112 (113)
T ss_dssp STTCCTTEEEGGGCBCCSS--CEEEECCSCCCCCCC---
T ss_pred ccccCCCcEEeeeCEEeCC--CEEEEECchhhhhhhccC
Confidence 3467889999999999754 899999999999999985
No 11
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=98.21 E-value=2.6e-07 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCCCCCccccceEeeCCCCCeEEEc
Q 043887 7 GLTETSHLGCQIVARPELDGICLAL 31 (48)
Q Consensus 7 ~~~~~SRLsCQi~v~~~ldGl~V~v 31 (48)
+..+++||+||+.+..+++|++|+|
T Consensus 69 ~~~~g~rLaCq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 69 DQPANARLACAITLSGENDGAVFEL 93 (93)
T ss_dssp TSCTTEEEGGGCEECGGGTTCEEEC
T ss_pred CCCCCcEEeeECEECCCCCceEEEC
Confidence 6778999999999999999999986
No 12
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=98.18 E-value=5.2e-07 Score=51.21 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=28.5
Q ss_pred CCCCCCCCccccceEeeCCCCCeEEEcCCcchheeec
Q 043887 5 AFGLTETSHLGCQIVARPELDGICLALPAASRNFAVD 41 (48)
Q Consensus 5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~ 41 (48)
+.+..+++||+||+.+..+ +++|++|+.+.|++.|
T Consensus 76 ~~~~~~g~rLaCq~~~~~~--dl~v~~~~~~~~~~~~ 110 (111)
T 1i7h_A 76 AWGLEPESRLSCQARVTDE--DLVVEIPRYTINHARE 110 (111)
T ss_dssp CTTCCTTEEETTTCBCCSS--CEEEECCSCCCCTTCC
T ss_pred ccccCCCcEEEEEEEEeCC--CEEEEEChHHhhhhcc
Confidence 3456789999999998644 8999999999887763
No 13
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=96.71 E-value=0.00079 Score=37.06 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=21.4
Q ss_pred CCCccccceEeeCCCCCeEEEcCCcchhe
Q 043887 10 ETSHLGCQIVARPELDGICLALPAASRNF 38 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~n~ 38 (48)
.++||+||..+.. +++|++|+.+..+
T Consensus 71 ~g~~LaCq~~~~~---d~~v~~~~~~~~~ 96 (97)
T 1a70_A 71 EGWVLTCAAYPVS---DVTIETHKKEELT 96 (97)
T ss_dssp HTEEEGGGCEESS---CEEEECCCGGGCC
T ss_pred CCeEEEeECEECC---CEEEEeCchhhcc
Confidence 5689999999876 4999999877643
No 14
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=96.52 E-value=0.0014 Score=35.73 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=20.7
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCcch
Q 043887 9 TETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
.+++||+||..+.. +++|++|+.+.
T Consensus 68 ~~g~~LaCq~~~~~---d~~i~~~~~~~ 92 (94)
T 1awd_A 68 GKGFVLTCVAYPTS---DVTILTHQEAA 92 (94)
T ss_dssp HTTEEEGGGCEESS---CEEEECCCGGG
T ss_pred hCCcEEeeECEECC---CEEEEecchhc
Confidence 35789999999875 79999998764
No 15
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=96.44 E-value=0.0017 Score=35.69 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=20.0
Q ss_pred CCCccccceEeeCCCCCeEEEcCCcch
Q 043887 10 ETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
+++||+||..+.. +++|++|+.+.
T Consensus 73 ~g~~LaCq~~~~~---d~~v~~~~~~~ 96 (98)
T 1czp_A 73 AGYVLTCVAYPTS---DVVIQTHKEED 96 (98)
T ss_dssp TTEEEGGGCEESS---CEEEECCCTTT
T ss_pred CCeEEeeeCEECC---CEEEEeccccc
Confidence 5789999999876 58999998654
No 16
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=96.38 E-value=0.0017 Score=35.45 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=19.9
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCcc
Q 043887 9 TETSHLGCQIVARPELDGICLALPAAS 35 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~ 35 (48)
..++||+||..+.. +++|++|+.+
T Consensus 68 ~~g~~LaCq~~~~~---d~~v~~~~~~ 91 (93)
T 1wri_A 68 EQGYVLTCIAIPES---DVVIETHKED 91 (93)
T ss_dssp HTTEEETTTCEESS---CEEEECCCGG
T ss_pred hCCcEEeeeCEECC---CEEEEecccc
Confidence 35789999999876 4899999865
No 17
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=96.35 E-value=0.0012 Score=36.43 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=21.3
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887 9 TETSHLGCQIVARPELDGICLALPAASRN 37 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~n 37 (48)
..++||+||..+.. +++|++|+.+..
T Consensus 70 ~~g~~LaCq~~~~~---d~~i~~~~~~~~ 95 (98)
T 1iue_A 70 KKKYILLCTCYPKS---DCVIETHKEDEL 95 (98)
T ss_dssp HTTEEEGGGCEESS---CEEEECCCHHHH
T ss_pred hCCeEEEeECEECC---CeEEEeCChHhh
Confidence 35789999999875 699999987654
No 18
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=96.19 E-value=0.0028 Score=34.29 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCcch
Q 043887 9 TETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
...+||+||..+.+ |++|++|+...
T Consensus 69 ~~g~~LaC~~~~~~---~~~v~~~~~~~ 93 (95)
T 1frr_A 69 EEGFVLTCIAIPES---DLVIETHKEEE 93 (95)
T ss_dssp HTTEEETTTCEESS---CEEEECCCTTT
T ss_pred hCCcEEeeECEECC---CEEEEEcchhh
Confidence 35689999999875 79999987654
No 19
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=95.98 E-value=0.0038 Score=34.05 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=19.7
Q ss_pred CCCccccceEeeCCCCCeEEEcCCcch
Q 043887 10 ETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
.++||+||..+.. +++|++|+...
T Consensus 73 ~g~~LaC~~~~~~---d~~v~~~~~~~ 96 (98)
T 1frd_A 73 KGFALLCVTYPRS---NCTIKTHQEPY 96 (98)
T ss_dssp TTEEEGGGCEESS---SEEEECCCGGG
T ss_pred CCcEEEeECEECC---CEEEEecchhh
Confidence 5699999999875 68999987653
No 20
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=95.34 E-value=0.0054 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.4
Q ss_pred CCccccceEeeCCCCCeEEEcCCc
Q 043887 11 TSHLGCQIVARPELDGICLALPAA 34 (48)
Q Consensus 11 ~SRLsCQi~v~~~ldGl~V~vp~~ 34 (48)
++||+||..+.. +++|++|..
T Consensus 77 g~~LaCq~~~~~---d~~v~~~~~ 97 (98)
T 1jq4_A 77 GLVLLCRTYPKT---DLEIELPYT 97 (98)
T ss_dssp HCBCTTTCCSSC---CSEEECSCC
T ss_pred CcEEEeeCEECC---CEEEEecCC
Confidence 589999999875 589999864
No 21
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=94.64 E-value=0.0062 Score=35.61 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCcchhee
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
...++||+||..+..+ .++|++.....+.+
T Consensus 94 ~~~g~rLaCq~~~~~d--~i~i~~~~~~~~~~ 123 (128)
T 1doi_A 94 EDKNVRLTCIGSPDAD--EVKIVYNAKHLDYL 123 (128)
T ss_dssp HTSCEEEGGGEEECSS--EEEEEECGGGSGGG
T ss_pred ccCCEEEEEEeEEcCC--eEEEEecCCCcchh
Confidence 4578999999998875 68887665544433
No 22
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=93.92 E-value=0.024 Score=36.05 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=19.0
Q ss_pred CCCCccccceEeeCCCCCeEEEcCCc
Q 043887 9 TETSHLGCQIVARPELDGICLALPAA 34 (48)
Q Consensus 9 ~~~SRLsCQi~v~~~ldGl~V~vp~~ 34 (48)
..++||+||..+.+ +++|++|..
T Consensus 76 ~~g~~LaCq~~~~~---~~~v~~~~~ 98 (338)
T 1krh_A 76 QQGYVLACQCRPTS---DAVFQIQAS 98 (338)
T ss_dssp HHTEEETTTCEESS---SEEEEESSC
T ss_pred hCCeEEEEeCEECC---CeEEEEecc
Confidence 34689999999976 589999875
No 23
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=90.07 E-value=0.16 Score=36.66 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.3
Q ss_pred CCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887 8 LTETSHLGCQIVARPELDGICLALPAASR 36 (48)
Q Consensus 8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~ 36 (48)
..+++||+||..... +++|++|..+.
T Consensus 69 ~~~G~rLaCqa~~~s---Dl~Ielp~~~~ 94 (631)
T 3zyy_X 69 IAQGYVLACQTYPES---DLIIEIPFDSR 94 (631)
T ss_dssp HHTTEEETTTEEECS---SEEEECCTTSS
T ss_pred hcCCcEEeeeCEECC---CEEEEecchhh
Confidence 345799999999885 58999998765
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=51.81 E-value=7.3 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.3
Q ss_pred CCCccccceEeeCCCCCeEEE
Q 043887 10 ETSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~ 30 (48)
...||+||.....+ .++|.
T Consensus 302 ~g~~L~C~~~~~~d--~~~i~ 320 (321)
T 2pia_A 302 GTQIMVCVSRAKSA--ELVLD 320 (321)
T ss_dssp TTEEETTTCEESSS--EEEEC
T ss_pred CCeEEEeEeEECCC--cEEEe
Confidence 67899999988653 36664
No 25
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=38.62 E-value=18 Score=25.39 Aligned_cols=29 Identities=7% Similarity=0.088 Sum_probs=21.8
Q ss_pred CccccceEeeCCCCCeEEEcCCcchheee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFAV 40 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~~ 40 (48)
.||+|++....+-+++.|.+|.+-.++..
T Consensus 332 ~~Lgf~~~~~~~~~~~~V~vPs~R~DI~~ 360 (589)
T 3l4g_B 332 TRMYLKSEVIGDGNQIEIEIPPTRADIIH 360 (589)
T ss_dssp HHTTCEEEECSSSSEEEEEECSSCTTCCS
T ss_pred HHCCCeEEEcCCCceEEEECCCCccccCC
Confidence 48899988764435699999998776653
No 26
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=37.54 E-value=12 Score=22.63 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=15.6
Q ss_pred CCccccceEeeCCCCCeEEE
Q 043887 11 TSHLGCQIVARPELDGICLA 30 (48)
Q Consensus 11 ~SRLsCQi~v~~~ldGl~V~ 30 (48)
..+|||+..+.+..++++|+
T Consensus 72 ~~~~aC~~~~~~~~~~~~i~ 91 (243)
T 1kf6_B 72 VPKLACKTFLRDYTDGMKVE 91 (243)
T ss_dssp EEEEGGGCBGGGCTTCEEEE
T ss_pred EEEeeeeeEHhhCCCcEEEE
Confidence 45899999998865667775
No 27
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=30.37 E-value=29 Score=22.84 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=20.0
Q ss_pred CccccceEeeCCCCCeEEEcCCcchhee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
.||+|++.... +++.|++|.+-.++.
T Consensus 308 ~~lg~~~~~~~--~~~~V~vP~~R~DI~ 333 (348)
T 2cxi_A 308 EKMMYEVEISR--GRAKLKYPAFRDDIM 333 (348)
T ss_dssp HHTTCEEEEET--TEEEEEECTTCCCCC
T ss_pred HHcCCeEEeCC--CeEEEECCCCcccCC
Confidence 48999987554 479999999876654
No 28
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=27.79 E-value=42 Score=18.66 Aligned_cols=21 Identities=10% Similarity=0.242 Sum_probs=15.9
Q ss_pred ccccceEeeCCCCC--eEEEcCCc
Q 043887 13 HLGCQIVARPELDG--ICLALPAA 34 (48)
Q Consensus 13 RLsCQi~v~~~ldG--l~V~vp~~ 34 (48)
-|+|++.+.. +|| +.|.||+.
T Consensus 21 llG~~i~v~t-ldG~~~~v~ip~g 43 (121)
T 1xao_A 21 IAGGEFALEH-VSGDWLKVGIVPG 43 (121)
T ss_dssp HHCEEEEEEC-TTSCEEEEEECTT
T ss_pred hCCCEEEEec-CCCCEEEEEeCCC
Confidence 4688888854 778 78888865
No 29
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=23.48 E-value=38 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=20.9
Q ss_pred CccccceEeeCCCCCeEEEcCCcchheee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFAV 40 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~~ 40 (48)
.||+|++.... +++.|++|.+-.++..
T Consensus 431 ~~Lgf~v~~~~--~~~~V~vPs~R~DI~~ 457 (795)
T 3pco_B 431 RRLGCEVTEGK--DEWQAVAPSWRFDMEI 457 (795)
T ss_dssp HHHTCEEEEET--TEEEEECCSSCSSCSS
T ss_pred HHCCCeEEeCC--ceEEEECCCCccccCC
Confidence 48999997755 4799999998766543
No 30
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=23.35 E-value=54 Score=18.98 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCCccccceEeeCCCCCeEEEcCCcchhee-ecCC
Q 043887 10 ETSHLGCQIVARPELDGICLALPAASRNFA-VDGY 43 (48)
Q Consensus 10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~-~~~~ 43 (48)
.-||.=|++.++++ |+.++ .+.|.. +||.
T Consensus 43 ~Vs~~H~~L~~~~~--g~~L~---~s~ngt~vdG~ 72 (123)
T 4a0e_A 43 EIAPVHLVLMVDEE--GIRLT---DSAEPLLQEGL 72 (123)
T ss_dssp TSCSSCEEEEEETT--EEEEE---EESSCCEETTE
T ss_pred CccceeEEEEECCC--eEEEE---eccCCEEECCE
Confidence 47888999999886 98886 444444 5543
No 31
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=20.01 E-value=45 Score=24.36 Aligned_cols=26 Identities=12% Similarity=0.429 Sum_probs=20.4
Q ss_pred CccccceEeeCCCCCeEEEcCCcchhee
Q 043887 12 SHLGCQIVARPELDGICLALPAASRNFA 39 (48)
Q Consensus 12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~ 39 (48)
.||+|++.... +++.|++|.+-.++.
T Consensus 434 ~~Lg~~v~~~~--~~~~V~vPs~R~Di~ 459 (795)
T 2rhq_B 434 RQLGFETTLKG--ETLTVNVPSRRKDIT 459 (795)
T ss_dssp HHTTCEEEEET--TEEEEEEETTCTTCC
T ss_pred HHCCCeEEeCC--ceEEEECCCCccccC
Confidence 48999997543 479999999887765
Done!