BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043888
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 88/156 (56%), Gaps = 7/156 (4%)
Query: 138 LEVHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNS-TR 196
L++ DMT PLS YFI + HN+YLT QL+ S +AL G R +ELD+W
Sbjct: 314 LDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPE 373
Query: 197 EDINVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHL-TPDLQAKAAEMITQI 255
E+ + HG T+TT V L + L++I + AF +SPYPVI++ E+H+ + QAK AE I
Sbjct: 374 EEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSI 433
Query: 256 FGKMLYFPESNKL-----AEFPSPESLKQRIIISTK 286
FG L +K PSP+ L RI++ K
Sbjct: 434 FGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK 469
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 88/156 (56%), Gaps = 7/156 (4%)
Query: 138 LEVHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNS-TR 196
L++ DMT PLS YFI + HN+YLT QL+ S +AL G R +ELD+W
Sbjct: 312 LDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPE 371
Query: 197 EDINVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHL-TPDLQAKAAEMITQI 255
E+ + HG T+TT V L + L++I + AF +SPYPVI++ E+H+ + QAK AE I
Sbjct: 372 EEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSI 431
Query: 256 FGKMLYFPESNKL-----AEFPSPESLKQRIIISTK 286
FG L +K PSP+ L RI++ K
Sbjct: 432 FGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK 467
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 137 KLEVHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNS-T 195
KL +H+DMT PL++YFI + HN+YLT Q S S + L G R +ELD W
Sbjct: 307 KLLLHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPP 366
Query: 196 REDINVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHL-TPDLQAKAAEMITQ 254
E+ + HG T+TT + +++I ++AF +SPYP+I++ E+H+ +P QAK AE
Sbjct: 367 DEEPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRT 426
Query: 255 IFGKMLYFPESNKL-----AEFPSPESLKQRIIISTK 286
IFG ML K PSPE L+ +I+I K
Sbjct: 427 IFGDMLLTEPLEKFPLKPGVPLPSPEDLRGKILIKNK 463
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 140 VHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNSTREDI 199
V+ DM PLS+Y + + HN+YL +QL+ S +AL +G R +ELD W +E I
Sbjct: 162 VYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPI 221
Query: 200 NVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHLTPDLQAKAAEMITQIFGKM 259
+ HG T T+ + + L++IRD AF +SPYPVI++LE+H + + Q A + I G +
Sbjct: 222 -IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLRAILGPI 280
Query: 260 LY-FPESNKLAEFPSPE 275
L P PSPE
Sbjct: 281 LLDQPLDGVTTSLPSPE 297
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 140 VHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNSTREDI 199
V+ DM PLS+Y + + HN+YL +QL+ S +AL +G R +ELD W +E I
Sbjct: 160 VYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPI 219
Query: 200 NVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHLTPDLQAKAAEMITQIFGKM 259
+ HG T T+ + + L++IRD AF +SPYPVI++LE+H + + Q A + I G +
Sbjct: 220 -IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLRAILGPI 278
Query: 260 LY-FPESNKLAEFPSPE 275
L P PSPE
Sbjct: 279 LLDQPLDGVTTSLPSPE 295
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 137 KLEVHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNSTR 196
+L++ +M L+ Y+I + HN+YLTG+QL+ S + L G R +ELD W
Sbjct: 318 RLDLGANMKLTLAAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDGKDG 377
Query: 197 EDINVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHLTPDLQAKAAEMITQIF 256
E I + HG T+ T V + + +I ++AF S YPVI++ E+H + Q A+ + F
Sbjct: 378 EPI-ITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAF 436
Query: 257 GKMLYFP--ESNKL---AEFPSPESLKQRIIISTK 286
G++L + + L P+P L+++I+I K
Sbjct: 437 GELLLDKPIDGHPLKPGVPLPTPYDLRKKILIKNK 471
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 137 KLEVHNDMTAPLSNYFIYTGHNSYLTGNQLSSDCSEVPIAKALQRGVRVIELDIWPNSTR 196
+L++ +M L+ Y+I + HN+YLTG+QL+ S + L G R +ELD W
Sbjct: 318 RLDLGANMKLSLAAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDGKDG 377
Query: 197 EDINVLHGRTLTTPVSLINCLKSIRDNAFVSSPYPVIITLEDHLTPDLQAKAAEMITQIF 256
E I + HG T+ T V + + +I + AF S YPVI++ E+H + Q A+ + F
Sbjct: 378 EPI-ITHGFTMCTEVQFKDVVHAIAECAFKVSEYPVILSFENHCSVPQQKLLAQYCHEAF 436
Query: 257 GKML 260
G++L
Sbjct: 437 GELL 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,831,763
Number of Sequences: 62578
Number of extensions: 426045
Number of successful extensions: 709
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 11
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)