BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043890
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/489 (50%), Positives = 313/489 (64%), Gaps = 57/489 (11%)
Query: 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSR 79
++W FSQV G ++V E DIIS +EF+ +G+ LATGD+GGRVV+F++
Sbjct: 10 IQWCFSQVKG--AVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 80 RDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 139
+ E S SR E+ + FQSHEPEFDYLKSLEIEEKINKIRW N A FLLSTN
Sbjct: 58 -EQENKIQSHSR-GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115
Query: 140 DKTIXXXXXXXXXXXXIADMNVDPSKXXXXXXXXXXXXXXXPKPYLANGGSPSKEFSFPP 199
DKTI I++ + +P N + P
Sbjct: 116 DKTIKLWK--------ISERD--------------------KRPEGYNLKEEDGRYR-DP 146
Query: 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 259
+ +LR+P + + A RR++A+AH YHINSIS NSD ET++SADDLRINLW+LE
Sbjct: 147 TTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLE 206
Query: 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA 319
I+++SFNIVD+KPANME+LTEVIT+AEFHP CN YSSSKG+IRL D+R SALCD H+
Sbjct: 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266
Query: 320 ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVH 379
LFEE E P +RSFF+EII+SISD+KF+ GR++++RDY+++K+WD+NM++ PV T+QVH
Sbjct: 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVH 326
Query: 380 EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK- 438
EYLR KLC LYEND IFDKFECC +G V TGSY+N FR+F + TLEAS+
Sbjct: 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD--RNTKRDITLEASRE 384
Query: 439 NPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIAC 498
N R V P + S +R D VD S DF K+LH AWHP EN IA
Sbjct: 385 NNKPRTVLKPRKVCAS-------GKRKKDEISVD----SLDFNKKILHTAWHPKENIIAV 433
Query: 499 AAANSLYMY 507
A N+LY++
Sbjct: 434 ATTNNLYIF 442
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 14/147 (9%)
Query: 226 AHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 285
AHA + S + D ++D RI LW+ + I P + TS
Sbjct: 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP------TSL 220
Query: 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAI--------LFEEQEAPGSRSFFTEI 337
+HP + + G++ L+D + ++ S A+ +F P S +
Sbjct: 221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 338 IASISDIKFAKDGRHILSRDYMTLKLW 364
++ D ++ R RD++ W
Sbjct: 281 SLAVLDSSLSELFRSQAHRDFVRDATW 307
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 347 AKDGRHILSRDYMTLKLWDINMDSGPV-ATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405
+D R +S D + L I +SG V AT + E R KLCD Y+ +FD+ +C +
Sbjct: 161 VEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEAR-KLCDEYDALLVFDEVQCGMGR 219
Query: 406 DGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRG 465
G A Y + V A G + A R V P + R G
Sbjct: 220 TGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERANVLEPGDHGTTFGGNPLACRAG 279
Query: 466 SDV 468
V
Sbjct: 280 VTV 282
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 229 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 285
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345
F P N A S + RL DLR D + + II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRA----DQELMTYSHDN----------IICGITSVS 277
Query: 346 FAKDGRHILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC-L 403
F+K GR +L+ D +WD + + H+ ++ C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHD----------------NRVSCLGV 320
Query: 404 SGDGLRVATGSYSNLFRVF 422
+ DG+ VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 229 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 285
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345
F P N A S + RL DLR D + + II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRA----DQELMTYSHDN----------IICGITSVS 277
Query: 346 FAKDGRHILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC-L 403
F+K GR +L+ D +WD + + H+ ++ C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHD----------------NRVSCLGV 320
Query: 404 SGDGLRVATGSYSNLFRVF 422
+ DG+ VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 229 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 285
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 244
Query: 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345
F P N A S + RL DLR D + + II I+ +
Sbjct: 245 -FFPNG-NAFATGSDDATCRLFDLRA----DQELMTYSHDN----------IICGITSVS 288
Query: 346 FAKDGRHILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC-L 403
F+K GR +L+ D +WD + + H+ ++ C +
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHD----------------NRVSCLGV 331
Query: 404 SGDGLRVATGSYSNLFRVF 422
+ DG+ VATGS+ + +++
Sbjct: 332 TDDGMAVATGSWDSFLKIW 350
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 229 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 285
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345
F P N A S + RL DLR D + + II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRA----DQELMTYSHDN----------IICGITSVS 277
Query: 346 FAKDGRHILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC-L 403
F+K GR +L+ D +WD + + H+ ++ C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHD----------------NRVSCLGV 320
Query: 404 SGDGLRVATGSYSNLFRVF 422
+ DG+ VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 229 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 285
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345
F P N A S + RL DLR D + + II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRA----DQELMTYSHDN----------IICGITSVS 277
Query: 346 FAKDGRHILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC-L 403
F+K GR +L+ D +WD + + H+ ++ C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHD----------------NRVSCLGV 320
Query: 404 SGDGLRVATGSYSNLFRVF 422
+ DG+ VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 224 VYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 265
+YA+A D + +NN DG F S D RIN N +++ + F
Sbjct: 303 LYANAADIDYIAGTNNMDGHIFASIDMPRINKGNKKVTEEDF 344
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
Query: 347 AKDGRHILSRDYMTLKLWDINMDSGPV-ATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405
+D R S D + L I +SG V AT + E R KLCD Y+ +FD+ +C
Sbjct: 173 VEDLRRKXSEDVCAVFLEPIQGESGIVPATKEFLEEAR-KLCDEYDALLVFDEVQCGXGR 231
Query: 406 DGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRG 465
G A Y + V A G + A R V P + R G
Sbjct: 232 TGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERANVLEPGDHGTTFGGNPLACRAG 291
Query: 466 SDV 468
V
Sbjct: 292 VTV 294
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 227 HAHDYHINSISNNSDGETFISAD-DLRINLWNLE--ISNQSF 265
+ H+ I ++S+++DG+T SAD + IN W++ ISN+ F
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
>pdb|3D79|A Chain A, Crystal Structure Of Hypothetical Protein Ph0734.1 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 179
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 23 KFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDR 60
+ SQ+FGE A + + + D + EFDKT + + D+
Sbjct: 27 QLSQMFGEEIARKMLNKKDEVKVAEFDKTTEIILVNDK 64
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 217 LVARCRRVYAHAHDYHINSISNNSDGETF-ISADDLRINLWNLEISNQSFNIVDVKPANM 275
+ +R R Y H H+ INS+ DG+ F +DD L+++ +Q + + +P
Sbjct: 237 ITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRN 294
Query: 276 EDLTEVITSAEF 287
++ ++TS F
Sbjct: 295 DNELPIVTSVAF 306
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 224 VYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 265
+YA+A D + +NN DG F S D IN N +++ + F
Sbjct: 303 LYANAADIDYIAGTNNMDGHIFASIDMPAINKGNKKVTEEDF 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,475,591
Number of Sequences: 62578
Number of extensions: 567574
Number of successful extensions: 1392
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1378
Number of HSP's gapped (non-prelim): 20
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)