Query 043890
Match_columns 509
No_of_seqs 480 out of 2430
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 09:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 9.5E-51 2.1E-55 343.0 28.1 323 35-508 110-479 (480)
2 KOG1354 Serine/threonine prote 100.0 1.1E-48 2.4E-53 326.3 25.0 432 12-509 2-433 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-45 2.9E-50 315.8 24.1 288 33-509 168-459 (459)
4 KOG0271 Notchless-like WD40 re 100.0 6.5E-43 1.4E-47 295.6 23.5 280 34-457 151-470 (480)
5 KOG0286 G-protein beta subunit 100.0 1.7E-39 3.7E-44 265.6 30.7 293 33-508 48-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.7E-41 1.2E-45 287.5 19.6 254 20-423 200-458 (459)
7 KOG0319 WD40-repeat-containing 100.0 1.1E-38 2.5E-43 291.8 27.6 426 38-507 103-616 (775)
8 COG5170 CDC55 Serine/threonine 100.0 1.9E-39 4.1E-44 267.9 19.7 445 20-509 6-459 (460)
9 KOG0279 G protein beta subunit 100.0 2.9E-37 6.2E-42 251.0 30.5 299 33-508 8-311 (315)
10 KOG0315 G-protein beta subunit 100.0 2E-37 4.4E-42 247.7 26.9 250 52-446 10-266 (311)
11 KOG0265 U5 snRNP-specific prot 100.0 2.7E-37 5.9E-42 253.7 27.9 286 35-506 42-334 (338)
12 KOG0318 WD40 repeat stress pro 100.0 3.5E-36 7.7E-41 265.1 34.9 386 13-509 165-559 (603)
13 KOG0295 WD40 repeat-containing 100.0 3.3E-37 7.1E-42 259.6 27.0 308 5-507 77-403 (406)
14 KOG0284 Polyadenylation factor 100.0 6.1E-38 1.3E-42 267.8 19.4 279 40-508 96-378 (464)
15 KOG0291 WD40-repeat-containing 100.0 8.8E-36 1.9E-40 273.4 34.6 388 35-509 140-611 (893)
16 KOG0285 Pleiotropic regulator 100.0 2.2E-36 4.8E-41 254.0 27.5 288 37-508 148-437 (460)
17 KOG0315 G-protein beta subunit 100.0 8.2E-36 1.8E-40 238.5 29.4 269 38-446 37-308 (311)
18 KOG0279 G protein beta subunit 100.0 4.1E-36 9E-41 244.3 24.2 267 20-425 41-313 (315)
19 KOG0263 Transcription initiati 100.0 3.2E-36 6.9E-41 278.6 25.0 265 40-428 378-652 (707)
20 KOG0291 WD40-repeat-containing 100.0 1.9E-34 4.1E-39 264.7 35.5 386 39-509 95-549 (893)
21 KOG0276 Vesicle coat complex C 100.0 1.5E-35 3.3E-40 266.3 26.8 271 36-452 9-283 (794)
22 KOG0316 Conserved WD40 repeat- 100.0 1.5E-35 3.3E-40 235.0 23.7 283 36-508 13-297 (307)
23 KOG0296 Angio-associated migra 100.0 3.2E-35 7E-40 247.8 25.8 335 36-509 60-397 (399)
24 KOG0273 Beta-transducin family 100.0 6.4E-35 1.4E-39 253.8 27.8 276 39-508 234-521 (524)
25 KOG0293 WD40 repeat-containing 100.0 3.6E-35 7.9E-40 251.2 24.7 286 36-508 220-511 (519)
26 KOG0286 G-protein beta subunit 100.0 6.5E-35 1.4E-39 238.8 24.8 245 39-423 96-343 (343)
27 KOG0266 WD40 repeat-containing 100.0 9.8E-35 2.1E-39 276.7 29.5 289 39-508 158-452 (456)
28 KOG0282 mRNA splicing factor [ 100.0 9.2E-36 2E-40 260.1 19.2 291 30-508 204-503 (503)
29 KOG0645 WD40 repeat protein [G 100.0 8.2E-34 1.8E-38 230.0 29.0 294 36-508 10-309 (312)
30 KOG0306 WD40-repeat-containing 100.0 6.1E-34 1.3E-38 261.3 29.8 402 35-508 102-662 (888)
31 cd00200 WD40 WD40 domain, foun 100.0 2.9E-33 6.3E-38 255.2 34.0 281 37-508 6-289 (289)
32 KOG0318 WD40 repeat stress pro 100.0 2.7E-32 5.9E-37 240.7 36.5 309 37-444 56-369 (603)
33 KOG0273 Beta-transducin family 100.0 1.7E-33 3.7E-38 245.0 27.3 275 38-448 176-462 (524)
34 KOG0263 Transcription initiati 100.0 7.3E-34 1.6E-38 263.1 23.8 267 118-509 379-648 (707)
35 KOG0278 Serine/threonine kinas 100.0 4.5E-34 9.7E-39 228.7 18.6 279 37-508 11-295 (334)
36 PLN00181 protein SPA1-RELATED; 100.0 1.2E-31 2.7E-36 275.0 39.7 304 34-508 477-791 (793)
37 KOG0292 Vesicle coat complex C 100.0 4E-33 8.6E-38 260.3 25.8 295 39-508 8-319 (1202)
38 KOG0772 Uncharacterized conser 100.0 8.5E-33 1.8E-37 243.3 23.8 310 37-508 164-485 (641)
39 KOG0284 Polyadenylation factor 100.0 1.5E-33 3.2E-38 241.1 16.0 249 36-431 134-387 (464)
40 KOG0295 WD40 repeat-containing 100.0 7.6E-33 1.7E-37 233.4 19.2 246 33-424 143-405 (406)
41 KOG0283 WD40 repeat-containing 100.0 5E-32 1.1E-36 253.1 23.6 271 38-425 265-576 (712)
42 KOG0281 Beta-TrCP (transducin 100.0 8.3E-33 1.8E-37 231.8 16.1 235 39-429 196-432 (499)
43 KOG0275 Conserved WD40 repeat- 100.0 3E-32 6.4E-37 226.5 19.3 293 38-508 211-507 (508)
44 KOG1407 WD40 repeat protein [F 100.0 3E-31 6.6E-36 214.0 24.3 277 34-501 14-292 (313)
45 KOG0268 Sof1-like rRNA process 100.0 6.7E-33 1.4E-37 233.6 13.7 293 19-509 49-344 (433)
46 KOG0319 WD40-repeat-containing 100.0 2.1E-31 4.5E-36 244.5 24.5 281 35-452 318-603 (775)
47 KOG1446 Histone H3 (Lys4) meth 100.0 8.4E-30 1.8E-34 211.9 31.3 256 39-436 13-272 (311)
48 KOG0306 WD40-repeat-containing 100.0 2.5E-30 5.5E-35 237.7 29.9 361 40-507 65-577 (888)
49 KOG0313 Microtubule binding pr 100.0 4.2E-30 9.1E-35 218.1 27.7 299 28-508 93-416 (423)
50 KOG0310 Conserved WD40 repeat- 100.0 2.5E-30 5.4E-35 226.6 26.0 275 39-504 25-302 (487)
51 KOG0643 Translation initiation 100.0 8E-31 1.7E-35 212.2 20.8 297 36-426 6-318 (327)
52 KOG0265 U5 snRNP-specific prot 100.0 1.8E-30 4E-35 213.7 22.0 249 98-509 40-295 (338)
53 KOG0640 mRNA cleavage stimulat 100.0 1.4E-29 3.1E-34 209.3 26.6 313 36-508 108-424 (430)
54 KOG0285 Pleiotropic regulator 100.0 1.4E-30 3.1E-35 219.2 19.9 234 91-450 137-372 (460)
55 KOG0288 WD40 repeat protein Ti 100.0 9.4E-31 2E-35 224.4 18.7 285 36-507 171-458 (459)
56 PTZ00421 coronin; Provisional 100.0 6.5E-29 1.4E-33 235.5 32.3 302 23-451 5-316 (493)
57 KOG0296 Angio-associated migra 100.0 1.9E-29 4.1E-34 213.2 24.0 309 17-425 86-398 (399)
58 KOG0266 WD40 repeat-containing 100.0 2E-29 4.3E-34 240.4 27.2 251 32-425 195-454 (456)
59 KOG0645 WD40 repeat protein [G 100.0 8.6E-29 1.9E-33 201.0 26.0 244 38-425 59-311 (312)
60 KOG0277 Peroxisomal targeting 100.0 3.2E-30 6.9E-35 207.3 16.3 243 39-424 59-308 (311)
61 KOG0316 Conserved WD40 repeat- 100.0 4.4E-29 9.5E-34 198.5 20.9 212 118-444 18-231 (307)
62 KOG0277 Peroxisomal targeting 100.0 4.6E-29 9.9E-34 200.6 21.2 260 44-444 12-284 (311)
63 KOG0643 Translation initiation 100.0 1.2E-28 2.5E-33 199.8 23.2 287 99-507 4-314 (327)
64 KOG0281 Beta-TrCP (transducin 100.0 1E-29 2.2E-34 213.3 17.0 251 21-429 221-481 (499)
65 KOG0305 Anaphase promoting com 100.0 1.4E-28 3.1E-33 224.2 25.7 240 40-427 217-463 (484)
66 KOG0973 Histone transcription 100.0 1.4E-28 3.1E-33 236.1 26.7 315 40-508 13-353 (942)
67 KOG0647 mRNA export protein (c 100.0 1.6E-27 3.6E-32 196.5 27.5 273 40-451 27-306 (347)
68 KOG1408 WD40 repeat protein [F 100.0 4E-28 8.8E-33 222.0 25.1 448 38-509 76-625 (1080)
69 KOG0292 Vesicle coat complex C 100.0 1.4E-27 3E-32 223.5 29.1 252 37-426 48-322 (1202)
70 cd00200 WD40 WD40 domain, foun 100.0 1.2E-27 2.6E-32 218.1 28.2 241 36-423 47-289 (289)
71 KOG0305 Anaphase promoting com 100.0 1.2E-27 2.5E-32 218.3 27.0 272 42-508 179-459 (484)
72 KOG0641 WD40 repeat protein [G 100.0 2.3E-26 5E-31 182.0 30.6 309 39-508 31-347 (350)
73 KOG1539 WD repeat protein [Gen 100.0 1.9E-27 4E-32 221.5 27.7 372 38-508 241-646 (910)
74 KOG0282 mRNA splicing factor [ 100.0 1.3E-28 2.8E-33 215.6 18.4 259 21-423 241-503 (503)
75 KOG0276 Vesicle coat complex C 100.0 6.7E-28 1.5E-32 217.4 23.2 273 118-506 14-294 (794)
76 KOG0289 mRNA splicing factor [ 100.0 3.4E-27 7.3E-32 203.9 26.2 277 40-504 219-499 (506)
77 PTZ00420 coronin; Provisional 100.0 2.6E-26 5.7E-31 218.5 34.9 262 58-451 50-319 (568)
78 KOG0283 WD40 repeat-containing 100.0 1.4E-27 2.9E-32 223.6 25.5 302 116-508 266-574 (712)
79 KOG0293 WD40 repeat-containing 100.0 6.7E-28 1.4E-32 206.9 21.5 265 16-426 245-514 (519)
80 KOG0299 U3 snoRNP-associated p 100.0 4.3E-27 9.4E-32 204.9 26.6 271 37-427 139-412 (479)
81 KOG0278 Serine/threonine kinas 100.0 6.9E-29 1.5E-33 199.1 14.3 247 34-430 53-302 (334)
82 PLN00181 protein SPA1-RELATED; 100.0 7.2E-27 1.6E-31 240.0 31.8 255 38-424 530-792 (793)
83 KOG0300 WD40 repeat-containing 100.0 4.6E-27 9.9E-32 195.2 23.3 290 33-431 141-433 (481)
84 KOG1063 RNA polymerase II elon 100.0 1E-26 2.2E-31 212.4 25.4 419 34-508 185-697 (764)
85 KOG1036 Mitotic spindle checkp 100.0 4.8E-26 1E-30 188.7 27.0 277 40-501 13-294 (323)
86 KOG0313 Microtubule binding pr 100.0 5.2E-27 1.1E-31 199.4 21.4 274 35-425 139-418 (423)
87 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.7E-31 219.1 25.6 254 39-447 207-463 (537)
88 KOG4283 Transcription-coupled 100.0 3.5E-26 7.6E-31 188.0 23.5 297 38-450 41-347 (397)
89 KOG0289 mRNA splicing factor [ 100.0 2E-26 4.3E-31 199.2 23.0 247 35-424 256-505 (506)
90 PTZ00421 coronin; Provisional 100.0 8.9E-26 1.9E-30 214.2 27.9 218 36-376 71-298 (493)
91 KOG0294 WD40 repeat-containing 100.0 6.5E-26 1.4E-30 188.3 23.3 251 20-427 29-283 (362)
92 KOG2096 WD40 repeat protein [G 100.0 2.4E-25 5.2E-30 185.1 26.6 310 33-508 79-400 (420)
93 KOG0264 Nucleosome remodeling 100.0 2.7E-26 5.9E-31 199.9 21.6 268 37-425 121-404 (422)
94 KOG0308 Conserved WD40 repeat- 99.9 2.5E-26 5.4E-31 208.3 21.4 261 37-428 18-288 (735)
95 KOG1274 WD40 repeat protein [G 99.9 3E-25 6.4E-30 209.3 28.4 251 38-426 11-263 (933)
96 KOG1407 WD40 repeat protein [F 99.9 8.5E-26 1.9E-30 182.6 21.1 221 118-451 21-244 (313)
97 KOG1273 WD40 repeat protein [G 99.9 1.4E-25 3E-30 186.3 22.6 292 43-509 26-321 (405)
98 KOG4328 WD40 protein [Function 99.9 4.5E-25 9.8E-30 192.2 26.6 299 38-508 184-493 (498)
99 KOG0274 Cdc4 and related F-box 99.9 6.5E-26 1.4E-30 215.2 23.2 256 20-434 231-490 (537)
100 KOG0641 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 172.2 25.9 251 39-425 88-349 (350)
101 KOG0275 Conserved WD40 repeat- 99.9 3.8E-26 8.1E-31 190.3 17.7 248 34-423 257-507 (508)
102 KOG1332 Vesicle coat complex C 99.9 8.9E-26 1.9E-30 180.8 19.0 259 36-425 7-286 (299)
103 KOG0640 mRNA cleavage stimulat 99.9 1E-25 2.2E-30 186.6 19.8 230 118-436 113-345 (430)
104 KOG1332 Vesicle coat complex C 99.9 8.3E-26 1.8E-30 180.9 17.7 247 118-508 12-284 (299)
105 KOG0288 WD40 repeat protein Ti 99.9 4E-26 8.6E-31 196.1 16.8 246 33-423 212-459 (459)
106 KOG2055 WD40 repeat protein [G 99.9 7.7E-25 1.7E-29 190.9 24.4 286 40-508 213-510 (514)
107 KOG0973 Histone transcription 99.9 3.4E-25 7.4E-30 213.1 24.1 269 37-427 66-357 (942)
108 KOG1446 Histone H3 (Lys4) meth 99.9 3.9E-24 8.4E-29 178.3 27.2 241 118-509 15-261 (311)
109 KOG0310 Conserved WD40 repeat- 99.9 2.5E-25 5.3E-30 195.5 20.5 242 39-428 67-312 (487)
110 KOG0301 Phospholipase A2-activ 99.9 1.4E-24 3.1E-29 198.5 25.6 279 33-509 7-287 (745)
111 KOG0639 Transducin-like enhanc 99.9 3.8E-25 8.2E-30 194.8 20.9 283 37-507 416-701 (705)
112 PTZ00420 coronin; Provisional 99.9 7.5E-24 1.6E-28 201.8 31.3 178 226-431 70-255 (568)
113 KOG0269 WD40 repeat-containing 99.9 6.2E-26 1.3E-30 209.8 16.5 246 42-427 89-342 (839)
114 KOG1408 WD40 repeat protein [F 99.9 2.9E-24 6.2E-29 197.1 27.1 359 44-508 328-711 (1080)
115 KOG0264 Nucleosome remodeling 99.9 9.5E-25 2.1E-29 190.3 22.8 285 103-508 110-402 (422)
116 KOG0294 WD40 repeat-containing 99.9 3.9E-24 8.5E-29 177.7 25.2 251 54-445 3-256 (362)
117 KOG0650 WD40 repeat nucleolar 99.9 1.5E-24 3.3E-29 194.9 24.6 333 25-507 385-732 (733)
118 KOG0299 U3 snoRNP-associated p 99.9 2.3E-24 5E-29 188.0 24.5 252 37-424 199-455 (479)
119 KOG0772 Uncharacterized conser 99.9 2.8E-25 6E-30 196.2 18.9 262 38-423 212-485 (641)
120 KOG2445 Nuclear pore complex c 99.9 7.3E-24 1.6E-28 175.6 24.7 270 37-425 10-318 (361)
121 KOG2919 Guanine nucleotide-bin 99.9 5.6E-24 1.2E-28 177.4 23.4 292 42-448 51-350 (406)
122 KOG1063 RNA polymerase II elon 99.9 5.8E-24 1.3E-28 194.5 25.5 394 34-509 261-762 (764)
123 KOG2106 Uncharacterized conser 99.9 6.1E-23 1.3E-27 181.1 29.8 379 32-503 96-513 (626)
124 KOG0308 Conserved WD40 repeat- 99.9 6.4E-25 1.4E-29 199.3 16.4 197 226-452 69-269 (735)
125 KOG2048 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 184.7 31.4 272 40-448 25-301 (691)
126 KOG0302 Ribosome Assembly prot 99.9 1.1E-23 2.3E-28 179.2 21.6 220 227-509 208-437 (440)
127 KOG0300 WD40 repeat-containing 99.9 7.2E-24 1.6E-28 176.3 18.6 269 35-427 185-478 (481)
128 KOG1539 WD repeat protein [Gen 99.9 5.8E-23 1.3E-27 191.8 26.3 341 33-509 195-605 (910)
129 KOG0269 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 194.2 21.8 272 40-448 39-319 (839)
130 KOG2096 WD40 repeat protein [G 99.9 1E-22 2.3E-27 169.5 24.4 264 98-509 79-359 (420)
131 KOG0268 Sof1-like rRNA process 99.9 6.1E-24 1.3E-28 179.8 16.8 265 12-431 83-351 (433)
132 KOG0646 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 180.0 23.1 234 116-451 80-332 (476)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-21 2.7E-26 179.9 32.4 269 52-509 1-278 (300)
134 KOG0321 WD40 repeat-containing 99.9 7.2E-23 1.6E-27 185.7 22.6 286 45-450 54-372 (720)
135 KOG2106 Uncharacterized conser 99.9 1.8E-21 4E-26 171.8 30.7 270 40-425 246-521 (626)
136 KOG0646 WD40 repeat protein [G 99.9 4.7E-23 1E-27 180.3 20.4 238 39-384 80-323 (476)
137 KOG0267 Microtubule severing p 99.9 2.3E-24 4.9E-29 198.0 10.5 234 37-417 25-260 (825)
138 KOG0647 mRNA export protein (c 99.9 4.9E-22 1.1E-26 164.4 22.9 245 34-414 66-312 (347)
139 KOG1036 Mitotic spindle checkp 99.9 1.1E-21 2.5E-26 162.9 23.7 242 118-509 14-261 (323)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.3E-21 1.2E-25 175.7 29.8 262 41-448 31-300 (300)
141 KOG0639 Transducin-like enhanc 99.9 1.2E-22 2.5E-27 179.2 17.5 256 20-424 443-703 (705)
142 KOG0267 Microtubule severing p 99.9 8.4E-24 1.8E-28 194.4 10.8 222 118-452 29-252 (825)
143 KOG0302 Ribosome Assembly prot 99.9 6.5E-22 1.4E-26 168.5 21.0 264 36-418 147-432 (440)
144 KOG0321 WD40 repeat-containing 99.9 9.8E-22 2.1E-26 178.4 21.4 284 36-427 96-393 (720)
145 KOG0307 Vesicle coat complex C 99.9 1.3E-22 2.7E-27 196.5 16.4 191 227-453 113-311 (1049)
146 KOG1009 Chromatin assembly com 99.9 8.5E-21 1.8E-25 163.4 23.1 307 40-438 13-342 (434)
147 KOG1034 Transcriptional repres 99.9 1.9E-20 4.2E-25 156.8 24.3 324 37-508 35-381 (385)
148 KOG0301 Phospholipase A2-activ 99.9 5.9E-21 1.3E-25 175.1 22.8 231 37-425 54-288 (745)
149 KOG2048 WD40 repeat protein [G 99.9 2.2E-19 4.7E-24 164.6 32.8 207 39-369 68-277 (691)
150 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-20 3.6E-25 165.5 24.0 286 19-450 14-305 (673)
151 KOG0290 Conserved WD40 repeat- 99.9 1.9E-20 4.2E-25 154.2 22.6 209 227-508 147-363 (364)
152 KOG0322 G-protein beta subunit 99.9 2.1E-21 4.5E-26 157.7 16.0 304 38-424 12-322 (323)
153 KOG2055 WD40 repeat protein [G 99.9 7.2E-21 1.6E-25 166.4 20.3 252 39-425 256-512 (514)
154 KOG1445 Tumor-specific antigen 99.9 7E-20 1.5E-24 166.4 27.1 148 281-453 629-779 (1012)
155 KOG1274 WD40 repeat protein [G 99.9 6E-20 1.3E-24 173.9 25.7 269 118-501 14-290 (933)
156 KOG2445 Nuclear pore complex c 99.9 4.3E-20 9.3E-25 153.4 21.8 280 118-509 14-317 (361)
157 KOG4283 Transcription-coupled 99.9 1.4E-20 3E-25 155.3 18.7 220 226-508 39-274 (397)
158 KOG0270 WD40 repeat-containing 99.9 9.2E-20 2E-24 158.8 24.1 161 227-426 240-405 (463)
159 KOG4227 WD40 repeat protein [G 99.9 2.4E-20 5.3E-25 159.8 20.2 329 36-508 52-385 (609)
160 KOG1188 WD40 repeat protein [G 99.9 3.4E-20 7.4E-25 156.2 19.8 195 53-368 41-243 (376)
161 KOG0307 Vesicle coat complex C 99.9 2.6E-21 5.6E-26 187.5 15.0 255 39-428 63-330 (1049)
162 KOG0270 WD40 repeat-containing 99.9 1.9E-20 4.1E-25 163.1 18.6 264 44-431 177-455 (463)
163 KOG1273 WD40 repeat protein [G 99.9 1.2E-19 2.5E-24 151.3 21.5 198 120-425 26-226 (405)
164 KOG1034 Transcriptional repres 99.9 6.3E-21 1.4E-25 159.7 13.0 267 38-425 87-383 (385)
165 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-20 5.9E-25 164.2 16.8 214 42-384 81-297 (673)
166 KOG0644 Uncharacterized conser 99.8 7.5E-21 1.6E-25 177.8 13.2 264 36-452 186-452 (1113)
167 KOG0303 Actin-binding protein 99.8 4.4E-19 9.5E-24 152.3 22.0 292 23-450 10-321 (472)
168 KOG1538 Uncharacterized conser 99.8 4.9E-19 1.1E-23 161.9 22.0 270 42-507 14-290 (1081)
169 KOG0649 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 133.9 26.0 266 41-430 11-278 (325)
170 KOG0642 Cell-cycle nuclear pro 99.8 2.1E-19 4.5E-24 161.4 16.8 283 35-438 289-573 (577)
171 KOG0650 WD40 repeat nucleolar 99.8 3.7E-19 8.1E-24 160.7 18.3 249 97-509 392-679 (733)
172 KOG1517 Guanine nucleotide bin 99.8 1.5E-18 3.3E-23 166.6 23.3 314 42-428 1066-1384(1387)
173 KOG4328 WD40 protein [Function 99.8 1.2E-18 2.5E-23 152.6 18.6 249 227-509 183-449 (498)
174 KOG1007 WD repeat protein TSSC 99.8 3.1E-18 6.7E-23 141.2 20.0 244 18-367 94-361 (370)
175 KOG1963 WD40 repeat protein [G 99.8 3.5E-17 7.7E-22 154.9 29.9 316 37-509 202-537 (792)
176 KOG1007 WD repeat protein TSSC 99.8 6.9E-18 1.5E-22 139.2 20.2 271 37-425 60-361 (370)
177 KOG1009 Chromatin assembly com 99.8 2E-17 4.3E-22 142.8 22.9 295 18-429 37-376 (434)
178 KOG1587 Cytoplasmic dynein int 99.8 3.6E-17 7.9E-22 154.5 25.9 287 18-426 223-517 (555)
179 KOG1334 WD40 repeat protein [G 99.8 1.6E-18 3.4E-23 153.0 15.1 306 34-508 136-464 (559)
180 KOG1524 WD40 repeat-containing 99.8 2.2E-17 4.8E-22 147.5 22.4 182 116-423 103-284 (737)
181 PRK11028 6-phosphogluconolacto 99.8 2.1E-16 4.6E-21 146.3 29.6 169 233-427 82-260 (330)
182 KOG1310 WD40 repeat protein [G 99.8 5.3E-18 1.1E-22 151.8 17.6 244 33-369 43-305 (758)
183 KOG1240 Protein kinase contain 99.8 1.1E-16 2.4E-21 156.4 27.4 302 10-430 1022-1339(1431)
184 KOG1445 Tumor-specific antigen 99.8 1.2E-17 2.7E-22 152.0 18.4 262 48-441 587-860 (1012)
185 KOG0303 Actin-binding protein 99.8 2.4E-17 5.3E-22 141.7 18.9 209 38-368 79-295 (472)
186 KOG1524 WD40 repeat-containing 99.8 3.4E-17 7.3E-22 146.3 20.2 202 243-504 76-279 (737)
187 COG2319 FOG: WD40 repeat [Gene 99.8 3E-15 6.4E-20 145.2 36.0 265 36-446 61-336 (466)
188 PRK01742 tolB translocation pr 99.8 3.4E-17 7.4E-22 156.2 21.2 213 118-449 204-426 (429)
189 KOG2110 Uncharacterized conser 99.8 1.4E-15 3E-20 130.1 26.8 159 231-428 88-251 (391)
190 KOG0771 Prolactin regulatory e 99.8 4.3E-16 9.3E-21 135.7 23.7 184 234-452 148-338 (398)
191 PRK11028 6-phosphogluconolacto 99.8 2E-15 4.3E-20 139.9 29.9 263 39-425 33-304 (330)
192 KOG0290 Conserved WD40 repeat- 99.8 1.3E-16 2.9E-21 131.8 19.3 249 37-416 93-357 (364)
193 KOG0322 G-protein beta subunit 99.8 2.9E-17 6.3E-22 133.8 15.2 290 118-508 15-321 (323)
194 KOG2919 Guanine nucleotide-bin 99.8 1.8E-16 3.8E-21 133.1 20.1 247 39-416 103-361 (406)
195 KOG0642 Cell-cycle nuclear pro 99.8 3.4E-17 7.5E-22 147.3 16.3 232 118-438 295-531 (577)
196 KOG1587 Cytoplasmic dynein int 99.7 1.1E-15 2.5E-20 144.5 25.3 262 118-508 243-514 (555)
197 KOG1523 Actin-related protein 99.7 6.7E-16 1.4E-20 129.5 20.5 227 40-377 10-246 (361)
198 KOG1538 Uncharacterized conser 99.7 2.2E-16 4.7E-21 144.9 19.1 240 35-425 48-293 (1081)
199 KOG4497 Uncharacterized conser 99.7 1.6E-15 3.6E-20 127.6 22.4 300 45-428 13-394 (447)
200 COG2319 FOG: WD40 repeat [Gene 99.7 8.5E-14 1.8E-18 134.9 37.3 314 41-508 110-440 (466)
201 KOG1963 WD40 repeat protein [G 99.7 5.4E-15 1.2E-19 140.4 25.6 307 44-431 20-328 (792)
202 KOG1188 WD40 repeat protein [G 99.7 1E-15 2.2E-20 129.5 18.2 266 35-425 65-346 (376)
203 KOG2110 Uncharacterized conser 99.7 4.5E-14 9.8E-19 121.0 28.1 157 118-368 88-249 (391)
204 KOG4227 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 131.3 18.6 220 118-430 57-279 (609)
205 PRK03629 tolB translocation pr 99.7 1.1E-14 2.4E-19 138.6 26.8 168 234-448 246-427 (429)
206 KOG0771 Prolactin regulatory e 99.7 6.2E-16 1.3E-20 134.7 15.9 201 44-368 148-355 (398)
207 KOG1517 Guanine nucleotide bin 99.7 3.9E-15 8.5E-20 143.6 22.2 303 120-508 1067-1379(1387)
208 PRK01742 tolB translocation pr 99.7 3.1E-15 6.7E-20 142.8 19.2 209 37-383 200-418 (429)
209 KOG0649 WD40 repeat protein [G 99.7 2.3E-14 5E-19 115.7 20.8 260 118-476 11-276 (325)
210 KOG2139 WD40 repeat protein [G 99.7 7.2E-14 1.6E-18 119.4 24.5 266 41-426 99-384 (445)
211 KOG1523 Actin-related protein 99.7 4.7E-15 1E-19 124.5 15.9 241 118-447 11-258 (361)
212 KOG1240 Protein kinase contain 99.7 5.5E-14 1.2E-18 138.0 25.5 243 92-437 1035-1284(1431)
213 KOG1310 WD40 repeat protein [G 99.6 2.8E-15 6E-20 134.7 14.3 246 98-431 43-309 (758)
214 KOG3881 Uncharacterized conser 99.6 4.4E-14 9.5E-19 122.0 20.8 167 233-431 151-326 (412)
215 KOG2315 Predicted translation 99.6 1.6E-12 3.4E-17 117.8 30.8 332 21-508 15-388 (566)
216 PRK04922 tolB translocation pr 99.6 5.5E-14 1.2E-18 134.6 23.2 212 118-448 204-432 (433)
217 KOG2394 WD40 protein DMR-N9 [G 99.6 2.5E-14 5.5E-19 128.3 18.2 189 239-448 182-384 (636)
218 PRK02889 tolB translocation pr 99.6 1.4E-13 3.1E-18 131.2 24.7 214 118-448 196-424 (427)
219 KOG1272 WD40-repeat-containing 99.6 7.4E-16 1.6E-20 135.5 8.2 268 119-503 131-401 (545)
220 PRK05137 tolB translocation pr 99.6 4.3E-13 9.3E-18 128.7 26.3 211 118-448 202-432 (435)
221 PF08662 eIF2A: Eukaryotic tra 99.6 9.6E-14 2.1E-18 116.2 18.6 152 235-431 10-184 (194)
222 KOG2111 Uncharacterized conser 99.6 3.9E-12 8.5E-17 107.2 27.2 163 230-428 94-259 (346)
223 PF02239 Cytochrom_D1: Cytochr 99.6 1.6E-12 3.6E-17 119.9 27.6 323 53-509 6-346 (369)
224 KOG4497 Uncharacterized conser 99.6 2.1E-14 4.5E-19 121.1 13.3 176 123-412 14-195 (447)
225 PRK03629 tolB translocation pr 99.6 3.6E-13 7.7E-18 128.3 23.0 208 38-383 196-420 (429)
226 KOG2041 WD40 repeat protein [G 99.6 4.2E-13 9.2E-18 124.7 22.0 285 39-446 13-316 (1189)
227 KOG2321 WD40 repeat protein [G 99.6 3E-13 6.4E-18 122.5 20.0 262 108-431 42-308 (703)
228 KOG2394 WD40 protein DMR-N9 [G 99.6 6.7E-13 1.4E-17 119.4 21.7 136 231-384 220-378 (636)
229 KOG2321 WD40 repeat protein [G 99.6 5.4E-13 1.2E-17 120.9 21.2 164 228-426 173-344 (703)
230 COG2706 3-carboxymuconate cycl 99.6 1.1E-10 2.3E-15 100.9 33.6 296 17-429 16-327 (346)
231 KOG2139 WD40 repeat protein [G 99.6 4.8E-13 1E-17 114.5 18.7 167 231-425 99-268 (445)
232 PRK04922 tolB translocation pr 99.6 4.5E-13 9.8E-18 128.3 21.2 206 37-380 200-422 (433)
233 PF02239 Cytochrom_D1: Cytochr 99.6 2.5E-12 5.4E-17 118.7 24.2 263 44-435 40-356 (369)
234 PRK05137 tolB translocation pr 99.5 2.8E-12 6E-17 123.1 24.9 159 227-428 198-369 (435)
235 PRK02889 tolB translocation pr 99.5 9.2E-13 2E-17 125.7 21.3 209 37-381 192-415 (427)
236 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.4E-17 112.5 20.3 207 231-509 106-319 (412)
237 KOG0644 Uncharacterized conser 99.5 1.7E-14 3.7E-19 135.9 8.9 218 116-452 189-409 (1113)
238 KOG1272 WD40-repeat-containing 99.5 4.4E-13 9.5E-18 118.4 15.2 162 229-430 250-414 (545)
239 PF08662 eIF2A: Eukaryotic tra 99.5 1.8E-12 3.8E-17 108.6 18.3 147 283-508 9-177 (194)
240 KOG2111 Uncharacterized conser 99.5 2.2E-11 4.8E-16 102.7 24.3 107 241-368 147-257 (346)
241 TIGR02800 propeller_TolB tol-p 99.5 9.7E-12 2.1E-16 119.6 25.3 201 118-437 190-407 (417)
242 PRK04792 tolB translocation pr 99.5 1.3E-11 2.7E-16 118.2 25.4 167 235-448 266-446 (448)
243 COG2706 3-carboxymuconate cycl 99.5 2.1E-10 4.5E-15 99.2 29.8 167 234-425 92-274 (346)
244 KOG1334 WD40 repeat protein [G 99.5 6.1E-13 1.3E-17 118.2 14.8 214 118-425 143-366 (559)
245 PF10282 Lactonase: Lactonase, 99.5 2E-10 4.3E-15 106.5 31.9 278 40-431 36-330 (345)
246 PF10282 Lactonase: Lactonase, 99.5 3.9E-10 8.5E-15 104.6 33.8 176 232-425 88-275 (345)
247 PRK00178 tolB translocation pr 99.5 2.3E-11 4.9E-16 117.1 26.1 168 234-448 246-427 (430)
248 COG5354 Uncharacterized protei 99.5 1.2E-11 2.7E-16 110.8 21.7 293 40-426 32-396 (561)
249 TIGR02800 propeller_TolB tol-p 99.4 6.5E-11 1.4E-15 113.9 23.9 157 229-429 188-358 (417)
250 PRK00178 tolB translocation pr 99.4 7.9E-11 1.7E-15 113.3 22.7 204 37-378 195-415 (430)
251 KOG1354 Serine/threonine prote 99.4 7.3E-12 1.6E-16 106.6 13.2 235 231-508 85-357 (433)
252 KOG2314 Translation initiation 99.4 1.8E-10 3.8E-15 104.5 22.7 301 44-425 214-573 (698)
253 KOG2315 Predicted translation 99.4 1.5E-10 3.3E-15 105.2 21.9 150 251-450 251-412 (566)
254 PRK04792 tolB translocation pr 99.3 1.3E-10 2.9E-15 111.2 20.9 205 38-380 215-436 (448)
255 PRK01029 tolB translocation pr 99.3 2.2E-09 4.7E-14 102.1 26.4 174 234-449 234-425 (428)
256 COG4946 Uncharacterized protei 99.3 6.2E-09 1.4E-13 93.0 26.5 145 227-414 356-507 (668)
257 KOG1409 Uncharacterized conser 99.3 1.1E-10 2.4E-15 99.7 14.2 206 39-313 67-273 (404)
258 KOG0280 Uncharacterized conser 99.3 5.7E-10 1.2E-14 93.3 18.1 165 227-428 162-336 (339)
259 KOG1064 RAVE (regulator of V-A 99.3 4.6E-11 9.9E-16 122.2 13.2 198 38-378 2206-2408(2439)
260 KOG0974 WD-repeat protein WDR6 99.3 5.7E-10 1.2E-14 108.8 20.0 163 236-438 93-257 (967)
261 KOG4547 WD40 repeat-containing 99.3 4.3E-10 9.3E-15 103.1 17.6 146 241-426 69-221 (541)
262 PRK01029 tolB translocation pr 99.3 2.5E-09 5.5E-14 101.7 23.7 111 233-368 283-404 (428)
263 KOG0974 WD-repeat protein WDR6 99.3 4.1E-10 8.8E-15 109.8 18.1 151 46-313 139-291 (967)
264 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.1E-07 2.3E-12 86.1 30.7 165 233-431 107-293 (352)
265 PF04762 IKI3: IKI3 family; I 99.2 1.1E-07 2.4E-12 98.0 33.7 362 39-508 74-454 (928)
266 COG4946 Uncharacterized protei 99.2 4.3E-08 9.3E-13 87.8 25.6 136 279-450 359-500 (668)
267 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.5E-08 9.8E-13 88.5 26.3 123 286-434 200-338 (352)
268 KOG0280 Uncharacterized conser 99.2 5.3E-09 1.2E-13 87.7 18.7 157 233-426 124-285 (339)
269 KOG4547 WD40 repeat-containing 99.2 2.2E-09 4.9E-14 98.5 18.0 115 227-368 99-221 (541)
270 KOG4532 WD40-like repeat conta 99.2 1.9E-08 4.2E-13 83.3 21.2 170 233-428 161-334 (344)
271 KOG1409 Uncharacterized conser 99.2 3.3E-08 7.2E-13 84.8 22.8 250 37-428 21-273 (404)
272 COG5170 CDC55 Serine/threonine 99.1 6.9E-10 1.5E-14 93.6 11.3 252 118-438 27-322 (460)
273 KOG2041 WD40 repeat protein [G 99.1 3.7E-09 8E-14 99.1 16.1 171 118-368 15-187 (1189)
274 KOG4190 Uncharacterized conser 99.1 1.4E-09 3.1E-14 98.8 11.9 289 97-506 727-1032(1034)
275 PLN02919 haloacid dehalogenase 99.1 2.7E-07 5.8E-12 97.1 29.7 188 233-429 685-892 (1057)
276 KOG3914 WD repeat protein WDR4 99.0 6.1E-09 1.3E-13 91.2 13.9 79 227-314 148-227 (390)
277 PF04762 IKI3: IKI3 family; I 99.0 5.7E-07 1.2E-11 92.9 30.3 311 40-427 120-458 (928)
278 KOG4190 Uncharacterized conser 99.0 2.6E-09 5.5E-14 97.2 11.2 178 36-314 731-910 (1034)
279 KOG1064 RAVE (regulator of V-A 99.0 1.1E-08 2.4E-13 105.4 16.1 167 227-436 2205-2376(2439)
280 PRK04043 tolB translocation pr 99.0 1.3E-07 2.7E-12 89.5 22.1 103 235-367 281-400 (419)
281 KOG0309 Conserved WD40 repeat- 99.0 8.9E-09 1.9E-13 96.9 13.3 275 40-426 24-340 (1081)
282 KOG1912 WD40 repeat protein [G 99.0 1.2E-07 2.6E-12 90.1 20.6 257 40-426 15-305 (1062)
283 PRK04043 tolB translocation pr 99.0 3.1E-07 6.8E-12 86.9 23.0 154 232-430 189-362 (419)
284 PLN02919 haloacid dehalogenase 98.9 1.5E-06 3.2E-11 91.7 29.5 239 232-509 625-887 (1057)
285 PF15492 Nbas_N: Neuroblastoma 98.9 1.6E-06 3.5E-11 73.3 23.9 191 232-437 45-270 (282)
286 COG5354 Uncharacterized protei 98.9 9.9E-07 2.1E-11 80.0 23.7 226 233-508 74-346 (561)
287 PF08450 SGL: SMP-30/Gluconola 98.9 4.1E-06 8.8E-11 74.1 27.6 163 233-431 42-218 (246)
288 TIGR03300 assembly_YfgL outer 98.9 1.6E-06 3.5E-11 82.1 26.5 276 52-438 65-350 (377)
289 KOG0882 Cyclophilin-related pe 98.9 1.9E-07 4.1E-12 83.2 17.7 320 39-422 8-369 (558)
290 KOG1912 WD40 repeat protein [G 98.9 1.2E-07 2.7E-12 90.0 17.4 413 38-507 53-548 (1062)
291 KOG3914 WD repeat protein WDR4 98.9 5.3E-08 1.1E-12 85.5 13.3 163 233-436 65-233 (390)
292 KOG0309 Conserved WD40 repeat- 98.9 2.7E-08 6E-13 93.8 12.1 184 233-452 70-259 (1081)
293 PF08450 SGL: SMP-30/Gluconola 98.8 6.1E-06 1.3E-10 72.9 24.8 147 231-413 86-243 (246)
294 KOG4714 Nucleoporin [Nuclear s 98.8 2.3E-07 4.9E-12 76.8 13.8 75 231-312 180-256 (319)
295 KOG2695 WD40 repeat protein [G 98.8 3.6E-08 7.8E-13 84.7 9.5 159 242-438 225-388 (425)
296 KOG2314 Translation initiation 98.8 7.8E-07 1.7E-11 81.5 18.1 224 233-501 213-465 (698)
297 KOG4714 Nucleoporin [Nuclear s 98.7 3.2E-07 6.9E-12 75.9 13.2 151 237-426 96-255 (319)
298 PF15492 Nbas_N: Neuroblastoma 98.7 2.7E-05 5.8E-10 66.1 24.6 232 236-508 3-257 (282)
299 KOG4532 WD40-like repeat conta 98.7 2.6E-06 5.5E-11 71.0 18.1 175 241-451 83-263 (344)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 1.2E-08 2.6E-13 98.1 5.1 215 38-411 1099-1317(1516)
301 KOG0882 Cyclophilin-related pe 98.7 2.6E-07 5.6E-12 82.3 12.9 246 227-508 50-303 (558)
302 PF13360 PQQ_2: PQQ-like domai 98.7 1.2E-05 2.6E-10 70.8 22.6 158 242-430 76-235 (238)
303 PF07433 DUF1513: Protein of u 98.7 4.2E-05 9.1E-10 67.0 24.8 221 42-379 6-258 (305)
304 KOG2114 Vacuolar assembly/sort 98.6 3.1E-05 6.6E-10 75.3 23.4 120 229-368 124-244 (933)
305 TIGR03300 assembly_YfgL outer 98.6 2E-05 4.4E-10 74.6 21.9 134 242-422 241-376 (377)
306 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3.1E-12 55.9 4.7 33 36-68 7-39 (39)
307 KOG1275 PAB-dependent poly(A) 98.6 1.5E-06 3.2E-11 84.5 13.8 144 240-424 185-341 (1118)
308 KOG2695 WD40 repeat protein [G 98.5 2.4E-07 5.1E-12 79.8 7.1 135 229-380 251-388 (425)
309 KOG1645 RING-finger-containing 98.5 1.8E-05 4E-10 70.0 18.4 74 118-263 194-270 (463)
310 PF00400 WD40: WD domain, G-be 98.5 4.6E-07 9.9E-12 53.7 5.8 37 97-147 3-39 (39)
311 PF07433 DUF1513: Protein of u 98.4 4.9E-05 1.1E-09 66.6 18.7 116 228-365 160-283 (305)
312 PF08596 Lgl_C: Lethal giant l 98.4 0.00034 7.3E-09 65.4 24.4 256 119-431 3-296 (395)
313 KOG1832 HIV-1 Vpr-binding prot 98.4 4.7E-07 1E-11 87.5 5.5 195 116-431 1100-1297(1516)
314 KOG3621 WD40 repeat-containing 98.3 0.0001 2.2E-09 70.3 20.0 167 39-312 32-199 (726)
315 KOG2066 Vacuolar assembly/sort 98.3 2.1E-05 4.5E-10 75.8 14.8 149 239-425 80-233 (846)
316 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0002 4.4E-09 66.9 21.5 225 234-501 104-347 (353)
317 PRK11138 outer membrane biogen 98.3 0.0013 2.7E-08 62.8 26.1 103 293-431 257-359 (394)
318 KOG2114 Vacuolar assembly/sort 98.3 0.00039 8.4E-09 68.0 22.0 167 240-439 75-257 (933)
319 KOG1645 RING-finger-containing 98.2 0.00015 3.2E-09 64.4 16.9 80 36-152 189-269 (463)
320 KOG1275 PAB-dependent poly(A) 98.2 3.6E-05 7.8E-10 75.3 14.2 119 226-367 213-342 (1118)
321 KOG3617 WD40 and TPR repeat-co 98.2 8.9E-05 1.9E-09 72.0 16.5 108 44-259 19-131 (1416)
322 PF11768 DUF3312: Protein of u 98.2 0.00012 2.7E-09 68.6 16.4 134 283-447 209-351 (545)
323 KOG1920 IkappaB kinase complex 98.2 0.00029 6.2E-09 71.5 19.8 237 231-509 69-321 (1265)
324 KOG1008 Uncharacterized conser 98.2 4.6E-07 1E-11 84.5 0.5 166 227-425 99-275 (783)
325 KOG1008 Uncharacterized conser 98.2 3.1E-06 6.6E-11 79.3 5.7 209 40-368 56-276 (783)
326 KOG3617 WD40 and TPR repeat-co 98.1 8.5E-05 1.8E-09 72.2 15.1 70 233-311 62-132 (1416)
327 KOG1920 IkappaB kinase complex 98.1 0.00063 1.4E-08 69.2 21.6 219 41-313 69-325 (1265)
328 PF06977 SdiA-regulated: SdiA- 98.1 0.0026 5.6E-08 55.2 22.8 221 40-364 21-247 (248)
329 PRK02888 nitrous-oxide reducta 98.1 0.00037 8E-09 67.2 18.9 72 339-426 321-405 (635)
330 COG0823 TolB Periplasmic compo 98.1 0.00012 2.6E-09 69.1 14.8 156 231-429 193-362 (425)
331 PF08596 Lgl_C: Lethal giant l 98.1 0.0036 7.7E-08 58.7 24.1 268 42-415 3-326 (395)
332 PF06433 Me-amine-dh_H: Methyl 98.0 0.0095 2E-07 53.3 23.7 111 235-368 99-214 (342)
333 KOG3621 WD40 repeat-containing 98.0 0.0012 2.6E-08 63.3 18.9 113 128-311 42-155 (726)
334 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.016 3.6E-07 54.2 29.3 101 334-436 303-408 (415)
335 PF14583 Pectate_lyase22: Olig 98.0 0.014 3E-07 53.3 28.0 96 251-368 168-273 (386)
336 PF04053 Coatomer_WDAD: Coatom 98.0 0.0004 8.7E-09 65.8 15.9 140 278-508 31-171 (443)
337 PF11768 DUF3312: Protein of u 97.9 5.3E-05 1.2E-09 71.0 9.6 95 19-152 235-332 (545)
338 KOG2066 Vacuolar assembly/sort 97.9 0.00086 1.9E-08 65.2 17.5 151 232-438 41-199 (846)
339 COG0823 TolB Periplasmic compo 97.9 0.002 4.3E-08 61.0 19.0 139 235-416 242-390 (425)
340 PF13360 PQQ_2: PQQ-like domai 97.9 0.0019 4.2E-08 56.7 18.2 151 249-438 1-152 (238)
341 PF06433 Me-amine-dh_H: Methyl 97.8 0.02 4.3E-07 51.3 23.2 165 245-436 151-330 (342)
342 PF06977 SdiA-regulated: SdiA- 97.8 0.017 3.6E-07 50.2 23.1 175 231-422 65-247 (248)
343 PF04053 Coatomer_WDAD: Coatom 97.8 0.019 4.2E-07 54.7 24.4 147 242-426 117-263 (443)
344 PRK11138 outer membrane biogen 97.8 0.0087 1.9E-07 57.1 22.6 136 243-424 257-393 (394)
345 PF00780 CNH: CNH domain; Int 97.8 0.023 5.1E-07 51.1 26.7 159 241-438 104-267 (275)
346 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0071 1.5E-07 56.6 20.1 287 40-414 42-346 (353)
347 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.011 2.4E-07 49.9 17.1 69 51-156 62-130 (354)
348 PF08553 VID27: VID27 cytoplas 97.6 0.013 2.9E-07 59.1 20.6 144 293-509 494-646 (794)
349 COG3490 Uncharacterized protei 97.6 0.019 4E-07 49.4 18.2 197 284-509 72-309 (366)
350 PF04841 Vps16_N: Vps16, N-ter 97.6 0.063 1.4E-06 51.1 24.2 39 339-378 217-256 (410)
351 PF04841 Vps16_N: Vps16, N-ter 97.4 0.14 3E-06 48.8 25.2 49 400-449 221-270 (410)
352 PF08553 VID27: VID27 cytoplas 97.3 0.029 6.2E-07 56.8 19.3 70 230-310 577-647 (794)
353 smart00320 WD40 WD40 repeats. 97.3 0.00046 1E-08 40.0 4.2 31 38-68 10-40 (40)
354 cd00216 PQQ_DH Dehydrogenases 97.3 0.18 3.9E-06 49.5 24.2 30 406-436 405-434 (488)
355 KOG4640 Anaphase-promoting com 97.2 0.0018 4E-08 61.3 9.0 74 231-314 21-96 (665)
356 PRK02888 nitrous-oxide reducta 97.2 0.12 2.7E-06 50.5 20.8 30 400-429 325-355 (635)
357 COG3490 Uncharacterized protei 97.1 0.031 6.7E-07 48.0 14.1 84 231-314 226-314 (366)
358 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.5E-08 37.5 5.1 28 118-147 13-40 (40)
359 PF00780 CNH: CNH domain; Int 97.1 0.2 4.4E-06 45.0 25.2 120 233-368 38-166 (275)
360 COG3386 Gluconolactonase [Carb 97.1 0.21 4.7E-06 45.1 20.6 93 339-448 163-264 (307)
361 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0021 4.6E-08 39.0 5.3 31 40-70 11-41 (47)
362 KOG4640 Anaphase-promoting com 97.1 0.0026 5.6E-08 60.4 8.2 79 40-156 20-99 (665)
363 PF03178 CPSF_A: CPSF A subuni 97.0 0.19 4E-06 46.5 20.5 117 227-367 85-202 (321)
364 COG3391 Uncharacterized conser 97.0 0.31 6.6E-06 46.1 22.1 179 232-449 117-309 (381)
365 COG3391 Uncharacterized conser 97.0 0.33 7.1E-06 45.9 21.9 176 233-452 76-266 (381)
366 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.061 1.3E-06 39.5 13.0 63 286-367 9-71 (111)
367 PF02897 Peptidase_S9_N: Proly 96.9 0.46 1E-05 45.7 26.3 34 41-74 124-162 (414)
368 KOG2395 Protein involved in va 96.9 0.028 6E-07 52.6 12.9 142 294-508 348-498 (644)
369 COG3204 Uncharacterized protei 96.9 0.27 5.9E-06 42.8 19.5 136 235-379 133-273 (316)
370 PF05694 SBP56: 56kDa selenium 96.8 0.4 8.6E-06 44.7 19.7 120 250-375 221-350 (461)
371 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.1 2.2E-06 38.4 12.4 64 231-306 43-110 (111)
372 PF12894 Apc4_WD40: Anaphase-p 96.6 0.006 1.3E-07 37.1 4.5 30 118-149 12-41 (47)
373 cd00216 PQQ_DH Dehydrogenases 96.5 1 2.2E-05 44.4 27.8 26 132-157 111-136 (488)
374 KOG1897 Damage-specific DNA bi 96.5 1.3 2.8E-05 45.4 29.3 183 242-462 684-892 (1096)
375 PF03178 CPSF_A: CPSF A subuni 96.5 0.73 1.6E-05 42.5 21.4 141 251-425 2-157 (321)
376 KOG2079 Vacuolar assembly/sort 96.5 0.018 4E-07 58.4 9.5 102 293-424 100-202 (1206)
377 PF10168 Nup88: Nuclear pore c 96.4 1.4 3.1E-05 45.1 22.8 83 231-313 85-182 (717)
378 PRK13616 lipoprotein LpqB; Pro 96.4 0.53 1.2E-05 47.0 19.2 77 278-367 446-525 (591)
379 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.2 4.4E-06 42.6 13.4 116 285-435 16-132 (354)
380 PRK13616 lipoprotein LpqB; Pro 96.2 0.96 2.1E-05 45.3 20.1 74 230-309 447-524 (591)
381 KOG2395 Protein involved in va 96.1 0.1 2.2E-06 49.1 11.6 101 246-367 398-500 (644)
382 PF12234 Rav1p_C: RAVE protein 96.1 0.32 6.9E-06 48.2 15.7 118 232-368 31-157 (631)
383 PF12234 Rav1p_C: RAVE protein 96.0 0.28 6.1E-06 48.5 14.9 119 341-508 32-154 (631)
384 KOG4499 Ca2+-binding protein R 95.9 0.42 9.1E-06 40.1 13.2 137 230-384 108-257 (310)
385 KOG2079 Vacuolar assembly/sort 95.9 0.24 5.2E-06 50.8 13.8 70 51-156 98-167 (1206)
386 PF14583 Pectate_lyase22: Olig 95.9 1.5 3.2E-05 40.6 23.3 166 230-424 187-380 (386)
387 PF05694 SBP56: 56kDa selenium 95.7 1.8 3.9E-05 40.5 22.0 172 236-429 135-346 (461)
388 PF05096 Glu_cyclase_2: Glutam 95.7 1.3 2.8E-05 38.6 20.5 171 221-431 35-209 (264)
389 COG3204 Uncharacterized protei 95.5 1.5 3.3E-05 38.4 20.3 180 227-430 82-267 (316)
390 COG3386 Gluconolactonase [Carb 95.5 1.9 4.1E-05 39.1 23.5 91 279-383 162-257 (307)
391 PF15390 DUF4613: Domain of un 95.4 0.82 1.8E-05 44.1 14.9 152 279-508 19-184 (671)
392 PF10313 DUF2415: Uncharacteri 95.4 0.093 2E-06 30.9 5.6 29 340-368 2-34 (43)
393 TIGR02604 Piru_Ver_Nterm putat 95.2 1.8 3.9E-05 40.8 16.8 73 280-367 14-99 (367)
394 PF02897 Peptidase_S9_N: Proly 95.2 3.2 7E-05 39.9 27.1 71 235-312 174-262 (414)
395 PF10647 Gmad1: Lipoprotein Lp 95.1 1.6 3.4E-05 38.6 15.3 155 232-417 25-187 (253)
396 PF08728 CRT10: CRT10; InterP 95.0 2.7 5.9E-05 42.4 17.6 75 230-309 163-245 (717)
397 PF14870 PSII_BNR: Photosynthe 94.9 2.8 6E-05 37.9 17.4 158 229-422 143-301 (302)
398 PF10168 Nup88: Nuclear pore c 94.9 0.83 1.8E-05 46.7 14.3 92 393-509 82-178 (717)
399 PF10313 DUF2415: Uncharacteri 94.4 0.19 4E-06 29.6 5.0 33 280-312 1-35 (43)
400 KOG2444 WD40 repeat protein [G 94.3 0.16 3.6E-06 42.4 6.5 141 244-426 33-178 (238)
401 PHA02713 hypothetical protein; 94.2 0.99 2.1E-05 45.2 13.1 32 406-438 512-545 (557)
402 KOG2444 WD40 repeat protein [G 94.2 0.33 7.1E-06 40.6 7.9 64 239-311 111-178 (238)
403 PF14781 BBS2_N: Ciliary BBSom 94.0 2.1 4.6E-05 32.8 12.2 82 44-154 2-86 (136)
404 PF10647 Gmad1: Lipoprotein Lp 93.7 4.7 0.0001 35.6 22.5 68 232-301 113-186 (253)
405 TIGR02604 Piru_Ver_Nterm putat 93.6 4.4 9.6E-05 38.2 15.7 113 231-355 14-140 (367)
406 KOG3630 Nuclear pore complex, 93.6 3.4 7.4E-05 43.3 15.1 101 233-355 158-260 (1405)
407 PF08728 CRT10: CRT10; InterP 93.5 8.9 0.00019 38.9 17.7 168 242-424 49-245 (717)
408 PF07569 Hira: TUP1-like enhan 93.4 0.54 1.2E-05 40.3 8.3 79 401-509 16-94 (219)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 9.7 0.00021 37.9 27.5 26 406-431 471-496 (527)
410 KOG1900 Nuclear pore complex, 93.2 1.3 2.7E-05 47.1 11.8 82 231-313 179-275 (1311)
411 PF07569 Hira: TUP1-like enhan 93.1 0.81 1.8E-05 39.2 9.0 78 288-368 19-96 (219)
412 PF07995 GSDH: Glucose / Sorbo 93.1 5.1 0.00011 37.1 14.9 57 281-349 3-59 (331)
413 KOG1897 Damage-specific DNA bi 92.9 13 0.00029 38.6 29.0 104 393-501 772-888 (1096)
414 KOG1916 Nuclear protein, conta 92.9 0.16 3.6E-06 50.9 4.9 98 203-310 153-265 (1283)
415 KOG1898 Splicing factor 3b, su 92.5 16 0.00034 38.4 21.5 34 40-73 582-621 (1205)
416 KOG3630 Nuclear pore complex, 92.4 1.8 3.9E-05 45.2 11.3 124 279-425 100-228 (1405)
417 PF14761 HPS3_N: Hermansky-Pud 92.1 3.9 8.4E-05 34.4 11.2 127 344-508 23-161 (215)
418 PHA02713 hypothetical protein; 92.1 11 0.00023 37.9 16.7 60 293-368 465-534 (557)
419 PRK13684 Ycf48-like protein; P 91.9 10 0.00023 35.1 15.9 117 230-366 214-330 (334)
420 KOG2377 Uncharacterized conser 91.8 5.8 0.00013 37.2 12.9 130 234-382 26-155 (657)
421 KOG4460 Nuclear pore complex, 91.7 3.4 7.4E-05 39.4 11.5 88 397-508 105-196 (741)
422 PF07995 GSDH: Glucose / Sorbo 91.6 5 0.00011 37.1 12.9 116 233-357 4-132 (331)
423 TIGR03606 non_repeat_PQQ dehyd 91.4 14 0.00031 35.6 19.4 59 231-290 30-89 (454)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 91.3 2.1 4.6E-05 40.5 10.0 37 38-74 305-341 (415)
425 PF15390 DUF4613: Domain of un 91.2 9.7 0.00021 37.2 14.1 72 235-313 117-189 (671)
426 KOG1916 Nuclear protein, conta 90.9 0.031 6.8E-07 55.7 -2.2 76 47-149 190-265 (1283)
427 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.7 19 0.00042 35.8 21.9 170 244-430 122-338 (527)
428 COG5167 VID27 Protein involved 90.3 11 0.00024 36.0 13.4 102 294-425 482-591 (776)
429 PHA03098 kelch-like protein; P 90.2 16 0.00034 36.7 15.9 24 406-429 487-515 (534)
430 PF10214 Rrn6: RNA polymerase 90.1 28 0.0006 36.7 19.1 139 228-369 77-234 (765)
431 PRK13684 Ycf48-like protein; P 90.0 16 0.00035 33.9 18.0 159 230-424 172-330 (334)
432 KOG4460 Nuclear pore complex, 89.8 5.9 0.00013 37.9 11.3 92 339-430 104-203 (741)
433 PF05096 Glu_cyclase_2: Glutam 89.8 13 0.00029 32.6 18.0 104 249-377 108-212 (264)
434 PF14870 PSII_BNR: Photosynthe 89.8 15 0.00033 33.3 25.5 239 229-506 15-257 (302)
435 KOG2377 Uncharacterized conser 89.8 15 0.00033 34.7 13.6 105 229-355 65-170 (657)
436 KOG4441 Proteins containing BT 89.7 24 0.00053 35.5 20.0 148 241-429 380-550 (571)
437 PF13449 Phytase-like: Esteras 89.6 17 0.00037 33.6 16.6 113 233-355 87-231 (326)
438 KOG4499 Ca2+-binding protein R 89.4 13 0.00027 31.8 17.1 97 341-449 160-264 (310)
439 PF13449 Phytase-like: Esteras 89.0 19 0.00041 33.3 19.3 119 231-355 20-163 (326)
440 PF12657 TFIIIC_delta: Transcr 89.0 4.3 9.4E-05 33.4 9.2 29 398-426 88-122 (173)
441 KOG4441 Proteins containing BT 88.6 26 0.00057 35.3 15.9 150 241-431 332-505 (571)
442 PF10214 Rrn6: RNA polymerase 88.5 36 0.00078 35.9 22.4 110 339-451 146-259 (765)
443 KOG2280 Vacuolar assembly/sort 88.4 31 0.00067 35.0 17.3 38 339-377 217-255 (829)
444 TIGR02276 beta_rpt_yvtn 40-res 86.2 4.1 9E-05 23.7 5.7 31 405-436 1-32 (42)
445 PHA02790 Kelch-like protein; P 85.9 34 0.00074 33.7 14.9 64 241-313 318-387 (480)
446 KOG2247 WD40 repeat-containing 85.8 0.1 2.2E-06 48.6 -2.3 130 282-448 37-169 (615)
447 KOG3616 Selective LIM binding 84.5 27 0.0006 35.2 12.9 37 118-156 15-51 (1636)
448 PHA03098 kelch-like protein; P 84.3 48 0.001 33.3 17.4 23 290-313 342-369 (534)
449 PF12657 TFIIIC_delta: Transcr 84.1 14 0.0003 30.4 9.6 32 118-151 86-123 (173)
450 PF14761 HPS3_N: Hermansky-Pud 83.9 25 0.00054 29.7 16.5 56 294-364 30-92 (215)
451 KOG2247 WD40 repeat-containing 83.8 0.38 8.2E-06 45.0 0.4 144 43-304 37-182 (615)
452 PLN00033 photosystem II stabil 83.3 43 0.00093 31.9 18.5 155 233-422 241-396 (398)
453 COG4590 ABC-type uncharacteriz 82.6 12 0.00026 35.2 9.2 59 293-368 329-387 (733)
454 PF10395 Utp8: Utp8 family; I 81.3 66 0.0014 32.7 19.3 34 117-152 129-162 (670)
455 PF14781 BBS2_N: Ciliary BBSom 81.2 23 0.0005 27.4 13.1 71 285-369 4-83 (136)
456 COG4590 ABC-type uncharacteriz 81.1 9.7 0.00021 35.8 8.1 167 230-430 220-391 (733)
457 KOG2280 Vacuolar assembly/sort 80.5 71 0.0015 32.6 19.0 48 400-449 221-270 (829)
458 COG4257 Vgb Streptogramin lyas 80.2 41 0.00089 29.7 17.6 209 127-451 69-288 (353)
459 COG5290 IkappaB kinase complex 78.8 26 0.00057 35.7 10.6 64 232-303 297-360 (1243)
460 PRK10115 protease 2; Provision 78.2 91 0.002 32.5 26.3 33 41-73 127-164 (686)
461 PF07250 Glyoxal_oxid_N: Glyox 78.2 46 0.001 29.1 12.9 130 284-435 71-206 (243)
462 TIGR02276 beta_rpt_yvtn 40-res 77.4 12 0.00025 21.7 5.6 30 348-378 1-32 (42)
463 COG5167 VID27 Protein involved 77.2 25 0.00054 33.8 9.5 102 246-368 531-633 (776)
464 COG3823 Glutamine cyclotransfe 76.8 44 0.00096 28.1 12.6 54 249-314 109-162 (262)
465 PF07676 PD40: WD40-like Beta 76.5 10 0.00022 21.7 4.7 30 278-307 7-38 (39)
466 PF02333 Phytase: Phytase; In 76.1 70 0.0015 30.1 20.3 151 251-426 127-291 (381)
467 TIGR03074 PQQ_membr_DH membran 75.5 1.1E+02 0.0024 32.1 21.8 23 409-431 461-483 (764)
468 PF14727 PHTB1_N: PTHB1 N-term 75.4 79 0.0017 30.3 24.2 58 243-310 145-204 (418)
469 TIGR03606 non_repeat_PQQ dehyd 74.2 84 0.0018 30.5 12.6 61 280-350 30-90 (454)
470 KOG1983 Tomosyn and related SN 73.3 60 0.0013 35.3 12.5 26 404-429 243-268 (993)
471 PF11715 Nup160: Nucleoporin N 72.5 19 0.00042 36.2 8.6 32 400-431 219-254 (547)
472 PF03088 Str_synth: Strictosid 72.5 26 0.00056 25.0 6.7 42 299-357 34-75 (89)
473 PF11715 Nup160: Nucleoporin N 72.4 21 0.00046 35.9 8.9 34 280-314 215-252 (547)
474 KOG1900 Nuclear pore complex, 71.7 1.3E+02 0.0029 33.0 14.0 172 236-426 84-273 (1311)
475 TIGR03118 PEPCTERM_chp_1 conse 70.4 83 0.0018 28.4 22.6 27 44-70 26-52 (336)
476 smart00564 PQQ beta-propeller 69.2 9.8 0.00021 20.6 3.3 23 409-431 8-30 (33)
477 PLN00033 photosystem II stabil 69.1 1.1E+02 0.0024 29.3 18.0 69 231-307 328-396 (398)
478 PF03022 MRJP: Major royal jel 68.8 91 0.002 28.2 18.8 154 252-426 35-216 (287)
479 PF11725 AvrE: Pathogenicity f 68.7 2.2E+02 0.0047 32.6 19.0 80 41-151 438-518 (1774)
480 KOG1983 Tomosyn and related SN 68.4 48 0.0011 35.9 10.6 33 41-73 36-68 (993)
481 TIGR03118 PEPCTERM_chp_1 conse 68.3 93 0.002 28.1 25.3 62 359-436 222-289 (336)
482 PF08801 Nucleoporin_N: Nup133 67.9 1.1E+02 0.0023 29.6 12.3 32 280-312 190-221 (422)
483 PF08801 Nucleoporin_N: Nup133 67.2 99 0.0022 29.9 11.9 29 398-426 192-220 (422)
484 PF02333 Phytase: Phytase; In 64.7 1.3E+02 0.0028 28.4 22.6 133 233-378 158-301 (381)
485 PRK10115 protease 2; Provision 63.5 1.9E+02 0.0042 30.1 26.0 111 232-367 128-255 (686)
486 PF03022 MRJP: Major royal jel 62.8 1.2E+02 0.0026 27.5 11.8 113 360-507 35-156 (287)
487 PF07250 Glyoxal_oxid_N: Glyox 61.1 42 0.00092 29.3 7.1 95 304-424 48-147 (243)
488 COG3823 Glutamine cyclotransfe 59.6 1.1E+02 0.0024 25.9 13.9 24 51-74 55-80 (262)
489 PF03088 Str_synth: Strictosid 59.4 59 0.0013 23.2 6.4 17 119-137 58-74 (89)
490 TIGR02608 delta_60_rpt delta-6 58.5 39 0.00084 21.5 4.8 30 42-71 2-36 (55)
491 PF01011 PQQ: PQQ enzyme repea 56.0 24 0.00051 20.1 3.4 22 410-431 3-24 (38)
492 PF11635 Med16: Mediator compl 54.3 2.9E+02 0.0063 29.2 22.2 32 400-431 264-295 (753)
493 PF14269 Arylsulfotran_2: Aryl 54.1 65 0.0014 29.3 7.5 74 340-424 145-219 (299)
494 PF14269 Arylsulfotran_2: Aryl 53.4 71 0.0015 29.1 7.7 76 41-149 144-220 (299)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 51.6 1.3E+02 0.0028 31.8 9.7 68 301-384 328-402 (912)
496 COG4247 Phy 3-phytase (myo-ino 51.3 1.7E+02 0.0037 25.6 13.0 116 282-425 58-186 (364)
497 PF13570 PQQ_3: PQQ-like domai 50.2 29 0.00063 19.9 3.2 21 406-426 20-40 (40)
498 KOG3522 Predicted guanine nucl 50.0 49 0.0011 34.1 6.4 34 400-437 631-664 (925)
499 PF12768 Rax2: Cortical protei 49.0 2E+02 0.0044 25.9 11.3 54 251-313 16-75 (281)
500 PF12341 DUF3639: Protein of u 48.8 40 0.00087 17.7 3.2 25 119-147 3-27 (27)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-51 Score=342.95 Aligned_cols=323 Identities=15% Similarity=0.287 Sum_probs=278.5
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
...||.++|.|++|+|+|..||+|+.|.++|+||+.+..+ ..+.++|.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----------------------~~t~KgH~--------- 157 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----------------------LFTCKGHK--------- 157 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----------------------ceeecCCc---------
Confidence 4457999999999999999999999999999999999887 78889999
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|||+.||+|+.||+|++||..++++.-.
T Consensus 158 ---~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~-------------------------------------- 194 (480)
T KOG0271|consen 158 ---NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGR-------------------------------------- 194 (480)
T ss_pred ---cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccc--------------------------------------
Confidence 88999999 99999999999999999999988863311
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-----CCCEEEEE-cCCeEEEEEccCCCceeeEe
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~-~dg~i~iwd~~~~~~~~~~~ 268 (509)
. +.+|...|++++|.| ..++|+++ .||.|+|||+..+...+
T Consensus 195 -----------------------------~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~--- 241 (480)
T KOG0271|consen 195 -----------------------------A-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR--- 241 (480)
T ss_pred -----------------------------c-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE---
Confidence 1 489999999999965 57889999 99999999999766554
Q ss_pred eccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe-
Q 043890 269 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA- 347 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s- 347 (509)
.+.+|..+|+|+.|--+| ++++|+.|++|++|+...+.++ +.+. +|...|+.++++
T Consensus 242 -----~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lk------------GHahwvN~lalsT 298 (480)
T KOG0271|consen 242 -----TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELK------------GHAHWVNHLALST 298 (480)
T ss_pred -----EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhc------------ccchheeeeeccc
Confidence 578999999999998775 9999999999999999998763 4444 445677777776
Q ss_pred ----------cC-------------------------CCEEEEecC-CeEEEEECCCCCCceEEEeeccccccccccccc
Q 043890 348 ----------KD-------------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE 391 (509)
Q Consensus 348 ----------~~-------------------------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
|. ++.|++|+| .++.+|+-....+++..+.+|...+.
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn------- 371 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN------- 371 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee-------
Confidence 22 345999876 99999998876789999999998865
Q ss_pred CCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCC---cccceeeEeecCCCC
Q 043890 392 NDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSR---SLSSITRVVRRGSDV 468 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~---~~~~~~~~~~~~~~~ 468 (509)
.+.||||++++|+++-|..|++|+..+|+.+. +|.+|-.+|+.++|+.|.+-. ..+...++|+.....
T Consensus 372 --------~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la-sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 372 --------HVSFSPDGRYIASASFDKSVKLWDGRTGKFLA-SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred --------eEEECCCccEEEEeecccceeeeeCCCcchhh-hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 89999999999999999999999999999999 999999999999999998763 234667888877777
Q ss_pred CcccCCCcccccccceEEEEEcCCCcEEEEEecC-ceEEEe
Q 043890 469 PGVDTNGNSFDFTTKLLHLAWHPTENSIACAAAN-SLYMYY 508 (509)
Q Consensus 469 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~-~i~v~~ 508 (509)
...+|.|+ .++|.++.|+|||..+++|+.+ .+++|.
T Consensus 443 l~~DLpGh----~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGH----ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCC----CceEEEEEecCCCceeecCCCceEEEeec
Confidence 77888886 8999999999999999999884 556663
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-48 Score=326.31 Aligned_cols=432 Identities=63% Similarity=0.992 Sum_probs=365.8
Q ss_pred cccCCCcceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCcccccccccccccc
Q 043890 12 AQASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSR 91 (509)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 91 (509)
++..+...+.|+|.|.|+.. +...+-|.++.|+..|.+||+|+.+|.|.++.-+....
T Consensus 2 ~~~~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~----------------- 59 (433)
T KOG1354|consen 2 ATMGKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK----------------- 59 (433)
T ss_pred CCcCcchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------
Confidence 45667788999999999654 44578999999999999999999999999998664432
Q ss_pred CCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCC
Q 043890 92 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGN 171 (509)
Q Consensus 92 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (509)
.++.+...++.|+++|+++++++.+..|+.++|+...+...++....|.+|++|.+........ ....
T Consensus 60 -~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~---------- 127 (433)
T KOG1354|consen 60 -GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNL---------- 127 (433)
T ss_pred -cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccc----------
Confidence 2567789999999999999999999999999996555566788889999999999986543321 0000
Q ss_pred cccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCC
Q 043890 172 VASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDL 251 (509)
Q Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg 251 (509)
......+....+++..+...+......|+|.|..+|...|++|.++.|++.+++++|-
T Consensus 128 ----------------------~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 128 ----------------------PEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred ----------------------cccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 0011345566788888888888888999999999999999999999999999999999
Q ss_pred eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCc
Q 043890 252 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSR 331 (509)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
.|.+|+++-..+.+.++++||..+......|++..|+|...++|+.++..|+|++.|+|...+|....+.|+.+..+..+
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEE
Q 043890 332 SFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA 411 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 411 (509)
..+.+....|..+.|+++|+|+++-+.-+|++||+.+..+++.+++.|.....+++.+|++++++.-|.++|+-++.+++
T Consensus 266 sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~ 345 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVM 345 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEe
Confidence 99999999999999999999999998899999999888899999999999999999999999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC
Q 043890 412 TGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP 491 (509)
Q Consensus 412 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 491 (509)
||+..+.+++|++..|.....++++...+. ....+....++ ..+......++.+..++|...|.+.+|||
T Consensus 346 TGsy~n~frvf~~~~gsk~d~tl~asr~~~---------~~~~~~k~~~V-~~~g~r~~~~~~vd~ldf~kkilh~aWhp 415 (433)
T KOG1354|consen 346 TGSYNNVFRVFNLARGSKEDFTLEASRKNM---------KPRKVLKLRLV-SSSGKRKRDEISVDALDFRKKILHTAWHP 415 (433)
T ss_pred cccccceEEEecCCCCcceeecccccccCC---------cccccccceee-ecCCCccccccccchhhhhhHHHhhccCC
Confidence 999999999999887766654565544332 11111112222 22222333556677788999999999999
Q ss_pred CCcEEEEEecCceEEEeC
Q 043890 492 TENSIACAAANSLYMYYA 509 (509)
Q Consensus 492 ~~~~la~~~~~~i~v~~~ 509 (509)
..+.+|++..+++++|++
T Consensus 416 ~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 416 KENSIAVAATNNLYIFQD 433 (433)
T ss_pred ccceeeeeecCceEEecC
Confidence 999999999999999974
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=315.83 Aligned_cols=288 Identities=21% Similarity=0.341 Sum_probs=254.9
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.+..++-+.+|..+.|+++++.||||+.+|.++||+...... ...|.+|.
T Consensus 168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~-----------------------~~~l~gH~------- 217 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL-----------------------LQTLRGHT------- 217 (459)
T ss_pred hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce-----------------------eEEEeccc-------
Confidence 455566889999999999999999999999999999998866 78999999
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.++.|.|-.++..++||+.||++++|++++...+..
T Consensus 218 -----~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~------------------------------------ 256 (459)
T KOG0272|consen 218 -----SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD------------------------------------ 256 (459)
T ss_pred -----cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh------------------------------------
Confidence 889999994322367899999999999999987654432
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+.+|...|..++|+|+|++|+++ -|.+-++||++++....
T Consensus 257 ---------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL------ 297 (459)
T KOG0272|consen 257 ---------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL------ 297 (459)
T ss_pred ---------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH------
Confidence 37889999999999999999999 89999999999987553
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
...+|...|.+++|++|| .++++|+.|..-+|||+++++. +..+.+ |..+|.++.|+|+|.
T Consensus 298 --~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~----im~L~g------------H~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 298 --LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRC----IMFLAG------------HIKEILSVAFSPNGY 358 (459)
T ss_pred --hhcccccccceeEecCCC-ceeeccCccchhheeecccCcE----EEEecc------------cccceeeEeECCCce
Confidence 568999999999999999 9999999999999999999984 455544 558999999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCce
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
.||+|+ |++++|||++. ..++.++.+|...++ .++|+| .|.+|+|++.|++++||.-.+..+
T Consensus 359 ~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS---------------~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVS---------------QVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred EEeecCCCCcEEEeeecc-cccceecccccchhh---------------heEecccCCeEEEEcccCcceeeecCCCccc
Confidence 999985 69999999997 788999999998876 899998 788999999999999999999999
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
++ .|.+|. .+|.+++.+|++.++++++- .++++|+
T Consensus 423 ~k-sLaGHe-------------------------------------------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 423 LK-SLAGHE-------------------------------------------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ch-hhcCCc-------------------------------------------cceEEEEeccCCceEEEeccCceeeecc
Confidence 98 888876 67888899999999999887 8999997
Q ss_pred C
Q 043890 509 A 509 (509)
Q Consensus 509 ~ 509 (509)
+
T Consensus 459 ~ 459 (459)
T KOG0272|consen 459 P 459 (459)
T ss_pred C
Confidence 4
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-43 Score=295.64 Aligned_cols=280 Identities=16% Similarity=0.242 Sum_probs=238.7
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
....+|...|.|++|+|||+.||+|+.||+|++||..+++. ....+.+|.
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g~~l~gH~-------- 200 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IGRALRGHK-------- 200 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------ccccccCcc--------
Confidence 34467999999999999999999999999999999998887 246788898
Q ss_pred hhhhccceeeEEE---EcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 114 LEIEEKINKIRWC---QTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 114 ~~~~~~v~~l~~~---~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..|++++|. ..|..++|++++.||.|+|||+..+.+...
T Consensus 201 ----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~---------------------------------- 242 (480)
T KOG0271|consen 201 ----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT---------------------------------- 242 (480)
T ss_pred ----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE----------------------------------
Confidence 889999995 345778999999999999999987653321
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
+.+|+.+|+|+.|--+| ++++| .|++|++|+...+..+
T Consensus 243 -----------------------------------lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~----- 281 (480)
T KOG0271|consen 243 -----------------------------------LSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLC----- 281 (480)
T ss_pred -----------------------------------eccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHH-----
Confidence 48999999999997665 78888 9999999999886654
Q ss_pred ccCCccCCCccceEEEEEeC-----------CC------------------------CcEEEEEEcCCeEEEEECCCCcc
Q 043890 270 VKPANMEDLTEVITSAEFHP-----------TH------------------------CNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~-----------~~------------------------~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
..+.+|...|+.++.+. .+ +..|++|+.|.++.+|+....+.
T Consensus 282 ---r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 282 ---RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred ---HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 37899999999998772 22 13599999999999998766542
Q ss_pred cCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCC
Q 043890 315 CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEND 393 (509)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
+...+.+|..-|+.+.||||++++|+++ |..|++||-++ ++.+.+|++|-..+.
T Consensus 359 ---------------pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VY--------- 413 (480)
T KOG0271|consen 359 ---------------PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAVY--------- 413 (480)
T ss_pred ---------------chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhccceeE---------
Confidence 1223566778999999999999999998 59999999997 899999999987755
Q ss_pred CccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccc
Q 043890 394 SIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSS 457 (509)
Q Consensus 394 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 457 (509)
.++|+.|.++|++|+.|.++++|++++.+... -|.+|...|..+.|+|++.....++
T Consensus 414 ------qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~-DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 414 ------QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ-DLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred ------EEEeccCccEEEEcCCCceEEEEEeeeeeecc-cCCCCCceEEEEEecCCCceeecCC
Confidence 99999999999999999999999999888776 9999999999999999998754443
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=265.62 Aligned_cols=293 Identities=15% Similarity=0.262 Sum_probs=242.0
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
+..+.+|.+.|+++.|++|.++|++++.||.+.|||..+... ...+.-..
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----------------------~haipl~s------- 97 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----------------------VHAIPLPS------- 97 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----------------------eeEEecCc-------
Confidence 345677999999999999999999999999999999887655 23333333
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|-..+| +|.|+++|+|+.|+...||++.+......
T Consensus 98 -----~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~------------------------------------ 134 (343)
T KOG0286|consen 98 -----SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN------------------------------------ 134 (343)
T ss_pred -----eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc------------------------------------
Confidence 67888888 99999999999999999999985421110
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
.+..+. +.+|.+-+.|+.|-+|+ .++++ .|.+.-+||+++++...
T Consensus 135 --------------------------~~v~r~-l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~------ 180 (343)
T KOG0286|consen 135 --------------------------VRVSRE-LAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQ------ 180 (343)
T ss_pred --------------------------ceeeee-ecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEE------
Confidence 011112 48999999999998855 56666 99999999999987653
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.+.+|.+.|.+++++|..++.|++|+-|+..++||+|.+.. +++|.+|+ +.|++++|.|+|.
T Consensus 181 --~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qtF~ghe------------sDINsv~ffP~G~ 242 (343)
T KOG0286|consen 181 --VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQTFEGHE------------SDINSVRFFPSGD 242 (343)
T ss_pred --EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEeecccc------------cccceEEEccCCC
Confidence 68899999999999994349999999999999999999864 46666554 8999999999999
Q ss_pred EEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 352 HILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 352 ~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
-+++|+| ++.++||++. .+.+..+.. . ..+.+|++++||..|++|+.|..|.++.+||.-.++.+
T Consensus 243 afatGSDD~tcRlyDlRa-D~~~a~ys~-~------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRA-DQELAVYSH-D------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV 308 (343)
T ss_pred eeeecCCCceeEEEeecC-CcEEeeecc-C------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceE
Confidence 9999986 9999999997 667776652 2 22344569999999999999999999999999888888
Q ss_pred eeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 431 ATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
. .|.+|. .+|+++..+|||.-|++|+- ..++||+
T Consensus 309 g-~L~GHe-------------------------------------------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 G-VLAGHE-------------------------------------------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred E-EeeccC-------------------------------------------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 7 777775 77999999999999999998 7899985
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-41 Score=287.51 Aligned_cols=254 Identities=19% Similarity=0.304 Sum_probs=225.3
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCC--CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceE
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKT--GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRY 97 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~--~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (509)
..|...+. .....+.+|.+.|.++.|+|. +.-||+|+.||++++|++++...
T Consensus 200 kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~----------------------- 253 (459)
T KOG0272|consen 200 KVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP----------------------- 253 (459)
T ss_pred eEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-----------------------
Confidence 45776664 234455679999999999997 67899999999999999998766
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
+..+.+|. ..|..++| +|+|++|+|++.|.+-++||++++.....
T Consensus 254 l~~l~gH~------------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~ElL~--------------------- 298 (459)
T KOG0272|consen 254 LQDLEGHL------------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSELLL--------------------- 298 (459)
T ss_pred hhhhhcch------------hhheeeee--cCCCceeeecccccchhhcccccchhhHh---------------------
Confidence 78889998 78999999 99999999999999999999998875433
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
..||...|.+++|.+||.++++| -|..-+||
T Consensus 299 ------------------------------------------------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 299 ------------------------------------------------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred ------------------------------------------------hcccccccceeEecCCCceeeccCccchhhee
Confidence 48899999999999999999999 89999999
Q ss_pred EccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 257 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
|++++++++ .+.+|..+|.+++|+|+| ..||+|+.|++++|||++..+. ++++. +
T Consensus 331 DlRtgr~im--------~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~ip------------A 385 (459)
T KOG0272|consen 331 DLRTGRCIM--------FLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYTIP------------A 385 (459)
T ss_pred ecccCcEEE--------EecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----ceecc------------c
Confidence 999999876 568899999999999999 9999999999999999998874 44444 4
Q ss_pred ccccEEEEEEec-CCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 337 IIASISDIKFAK-DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 337 ~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
|.+-|+.++|+| .|.+|++++ |++++||..++ ..+++.+.+|++.+- ++++++|++++++++
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV~---------------s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-WSPLKSLAGHEGKVI---------------SLDISPDSQAIATSS 449 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCC-cccchhhcCCccceE---------------EEEeccCCceEEEec
Confidence 558899999998 788999987 59999999996 899999999998754 999999999999999
Q ss_pred CCCcEEEEe
Q 043890 415 YSNLFRVFG 423 (509)
Q Consensus 415 ~dg~i~iw~ 423 (509)
.|.++++|.
T Consensus 450 ~DRT~KLW~ 458 (459)
T KOG0272|consen 450 FDRTIKLWR 458 (459)
T ss_pred cCceeeecc
Confidence 999999996
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=291.80 Aligned_cols=426 Identities=15% Similarity=0.170 Sum_probs=304.6
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEE-----------eeeccCCc
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYK-----------TEFQSHEP 106 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~h~~ 106 (509)
.|+.+|..++|+|.+.+||+|+.||.++|||+..+.+ ...++.+++++..+.++|..... ..+.....
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~-th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC-THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE-EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 3999999999999999999999999999999998887 66778888899999999865431 11111100
Q ss_pred chhhccch-hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCC--CCCcccCC-----C-CcccCCC
Q 043890 107 EFDYLKSL-EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNV--DPSKAVGN-----G-NVASSSN 177 (509)
Q Consensus 107 ~~~~~~~~-~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~-----~-~~~~~~~ 177 (509)
.- .+..+ .|.+.|+++.| ++|+..+++++.|..+.|||+.+.+...+..... +.+.+.++ + .++....
T Consensus 182 ~t-cl~~~~~H~S~vtsL~~--~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 182 RT-CLHTMILHKSAVTSLAF--SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred ch-HHHHHHhhhhheeeeee--ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence 00 11122 45689999999 9999999999999999999997655443322111 00001111 0 0111111
Q ss_pred CccCCccccCCCC------------C--------------------------------------------------ccee
Q 043890 178 NVSPKPYLANGGS------------P--------------------------------------------------SKEF 195 (509)
Q Consensus 178 ~~~~~~~~~~g~~------------~--------------------------------------------------~~~~ 195 (509)
......|.+.+.. + ....
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence 1111111111100 0 0111
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.+.....+.+|+++..+.... ...+|+..|.+++...+|.+|++| .|..+++|.++.+...... ...
T Consensus 339 laVATNs~~lr~y~~~~~~c~--------ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~----~a~ 406 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQ--------IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC----VAQ 406 (775)
T ss_pred EEEEeCCCceEEEecCCCceE--------EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh----hhh
Confidence 111222234444444333322 248999999999977788899999 9999999999543322111 135
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
..+|...|.+++++..+..+|++++.|.++++|++...+.... ...+ ........|...|++++.+|+.++++
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~------~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVL------TCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-ccee------hhhHHHHhhcccccceEecCCCceEE
Confidence 6789999999999988888999999999999999987432111 1111 11234456888999999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 433 (509)
+|+ |.+.+||++.. .....++.+|...+. ++.|+|..+.|||++.|++|+||.+.+..+++ +
T Consensus 480 T~SqDktaKiW~le~-~~l~~vLsGH~RGvw---------------~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk-T 542 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVW---------------CVSFSKNDQLLATCSGDKTVKIWSISTFSCLK-T 542 (775)
T ss_pred ecccccceeeecccC-ceEEEEeeCCccceE---------------EEEeccccceeEeccCCceEEEEEeccceeee-e
Confidence 997 59999999994 889999999987755 99999999999999999999999999999999 9
Q ss_pred eccCCCceeEEEEcCCCCCCc---ccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 434 LEASKNPMRRQVQTPSRPSRS---LSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
|++|...|....|-..+...+ ..+..+.|..........+.+ |+.+|+.++.+|....+++|+. +.+.+|
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----HNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----ccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999987776633 336788887665555555555 4899999999999999998888 555555
No 8
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-39 Score=267.88 Aligned_cols=445 Identities=50% Similarity=0.761 Sum_probs=339.0
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT 99 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (509)
-.|++.|+||++.........+.|++|.|...|.|||+|...|.|.+|..+.... -++++.+
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~------------------ceykf~t 67 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG------------------CEYKFFT 67 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccc------------------cchhhhh
Confidence 4699999999998877777889999999999999999999999999998765432 3566789
Q ss_pred eeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 100 EFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 100 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
.|++|+++|+++++++.+..|+.|.|+-......++..+.|++|++|.+.....+.+.+.+...
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~---------------- 131 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD---------------- 131 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc----------------
Confidence 9999999999999999999999999962223346778888999999999877554443332221
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEcc
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 259 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~ 259 (509)
...+|-|..+ -....+++..+...+......+.|++...|...+.++.|+.+.+.+++++|-.|.+|+++
T Consensus 132 --~~~~~~~g~~--------~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~ 201 (460)
T COG5170 132 --SFHSPMGGPL--------TSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLE 201 (460)
T ss_pred --ccccccCCCc--------CCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeecccc
Confidence 0111111111 011234555555555555667777787899999999999999999999999999999999
Q ss_pred CCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
.....+.++++||..+......|++..|+|...+.+..++..|.|++-|+|...+|..+.+.++....+.....+.+...
T Consensus 202 i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs 281 (460)
T COG5170 202 IIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS 281 (460)
T ss_pred ccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhh
Confidence 99999999999999998888999999999998889999999999999999999988887787776666666667777888
Q ss_pred cEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcE
Q 043890 340 SISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLF 419 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 419 (509)
.|..+.|+++|+++++-+.-+|+|||+++...++.++..|......+++.|++++++.-+.+.||.|.+.+++|+..+..
T Consensus 282 SISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 282 SISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred hhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 99999999999999999889999999999889999999999999999999999999999999999999999999999998
Q ss_pred EEEeCCCC-----ceeeeeeccCCCceeE---EEEcCCCCCCcccceeeEee-cCCCCCcccCCCcccccccceEEEEEc
Q 043890 420 RVFGCAPG-----STEATTLEASKNPMRR---QVQTPSRPSRSLSSITRVVR-RGSDVPGVDTNGNSFDFTTKLLHLAWH 490 (509)
Q Consensus 420 ~iw~~~~~-----~~~~~~~~~~~~~v~~---~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 490 (509)
-+|-..+. -.+. .+..|..+-.. ..-+-.........-.|... .+......-.....+++.+.|.+.+||
T Consensus 362 giyp~~ssg~~D~g~vv-~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD~d~ld~~k~ilh~sWh 440 (460)
T COG5170 362 GIYPTDSSGFKDVGHVV-NLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSWH 440 (460)
T ss_pred eeeccccCCCCcceEEE-ecccCCcccccCcccccccccccccccccccccccccCcceeeccCcchhHHHHHHHhhccC
Confidence 88875431 1111 33333322111 00000000000000000000 000001111112344567889999999
Q ss_pred CCCcEEEEEecCceEEEeC
Q 043890 491 PTENSIACAAANSLYMYYA 509 (509)
Q Consensus 491 p~~~~la~~~~~~i~v~~~ 509 (509)
|....+|++..++++||++
T Consensus 441 p~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 441 PFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred CcccceeeeecCceEEEec
Confidence 9999999999999999974
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-37 Score=251.02 Aligned_cols=299 Identities=16% Similarity=0.273 Sum_probs=235.6
Q ss_pred cCcceecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 33 AGEEVQEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
.+.+.+|++.|+.++..+. ...|++++.|..+.+|++..... +-......+.||+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs------ 63 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS------ 63 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc------
Confidence 5566789999999999987 58899999999999999986643 1223478889998
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..|..+.. ++||++.++++.|+++++||+.+++..+
T Consensus 64 ------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~------------------------------------ 99 (315)
T KOG0279|consen 64 ------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTR------------------------------------ 99 (315)
T ss_pred ------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEE------------------------------------
Confidence 77999999 9999999999999999999999875322
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
. +.+|...|.+++|++|.+.+++| .|.+|++|++.. .+.+++
T Consensus 100 --------------------------------~-f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~--- 142 (315)
T KOG0279|consen 100 --------------------------------R-FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTI--- 142 (315)
T ss_pred --------------------------------E-EEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEE---
Confidence 1 48999999999999999999999 999999999985 444433
Q ss_pred cCCccCCCccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 271 KPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
.-..+.+.|.++.|+|+. ..+|++++.|++|++||+++.++ ... +.+|.+.++.+++|||
T Consensus 143 ---~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l----~~~------------~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 143 ---HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL----RTT------------FIGHSGYVNTVTVSPD 203 (315)
T ss_pred ---ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch----hhc------------cccccccEEEEEECCC
Confidence 222348899999999984 37999999999999999999774 222 4456689999999999
Q ss_pred CCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 350 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 350 ~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
|.++++|+ ||.+.+||++. ++.+..+... .. |++++|+|+.-.|+.+. +..|+|||+.++.
T Consensus 204 GslcasGgkdg~~~LwdL~~-~k~lysl~a~-~~---------------v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNE-GKNLYSLEAF-DI---------------VNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred CCEEecCCCCceEEEEEccC-CceeEeccCC-Ce---------------EeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 99999986 59999999996 6666666432 22 33999999876666554 5569999999998
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
++. .+....... + ... -.....+++|++||..|..|-. +.|++|
T Consensus 266 ~v~-~l~~d~~g~-------s-----------------------~~~----~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 266 VVE-ELKLDGIGP-------S-----------------------SKA----GDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred hhh-hcccccccc-------c-----------------------ccc----CCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 876 444222000 0 000 0234578999999999888876 889988
Q ss_pred e
Q 043890 508 Y 508 (509)
Q Consensus 508 ~ 508 (509)
-
T Consensus 311 q 311 (315)
T KOG0279|consen 311 Q 311 (315)
T ss_pred E
Confidence 5
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-37 Score=247.66 Aligned_cols=250 Identities=15% Similarity=0.217 Sum_probs=200.6
Q ss_pred CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC
Q 043890 52 GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 131 (509)
Q Consensus 52 ~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 131 (509)
.-+||+++.|.+||+|...++.+ ..+++..+ +.|+.+.. .|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLei--Tpdk 52 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEI--TPDK 52 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEE--cCCc
Confidence 36899999999999999999998 55555444 78999999 9999
Q ss_pred ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccccc
Q 043890 132 ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVT 211 (509)
Q Consensus 132 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 211 (509)
+.||+|+.- .|++||++++....+
T Consensus 53 ~~LAaa~~q-hvRlyD~~S~np~Pv------------------------------------------------------- 76 (311)
T KOG0315|consen 53 KDLAAAGNQ-HVRLYDLNSNNPNPV------------------------------------------------------- 76 (311)
T ss_pred chhhhccCC-eeEEEEccCCCCCce-------------------------------------------------------
Confidence 999988875 899999998763222
Q ss_pred ccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC
Q 043890 212 SNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 290 (509)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 290 (509)
.. +.+|...|..+.|..+|+.+++| +||+++|||++.... .....|..+|+++..+|+
T Consensus 77 -----------~t-~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~---------qR~~~~~spVn~vvlhpn 135 (311)
T KOG0315|consen 77 -----------AT-FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC---------QRNYQHNSPVNTVVLHPN 135 (311)
T ss_pred -----------eE-EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc---------chhccCCCCcceEEecCC
Confidence 22 38899999999999999999999 999999999997432 245667899999999999
Q ss_pred CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCC
Q 043890 291 HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMD 369 (509)
Q Consensus 291 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~ 369 (509)
. ..|++|..+|.|++||+...... ..+-.. -...|.++...|||.+|+++.+ |..++|++...
T Consensus 136 Q-teLis~dqsg~irvWDl~~~~c~----~~liPe-----------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 136 Q-TELISGDQSGNIRVWDLGENSCT----HELIPE-----------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred c-ceEEeecCCCcEEEEEccCCccc----cccCCC-----------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 8 89999999999999999987521 111111 1258999999999999999976 99999998752
Q ss_pred -----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEE
Q 043890 370 -----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQ 444 (509)
Q Consensus 370 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 444 (509)
-.++..++.|+..+. .+-+|||+++||+++.|.+++||+.++--++...+++|..+++..
T Consensus 200 ~~~s~l~P~~k~~ah~~~il---------------~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHIL---------------RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC 264 (311)
T ss_pred CccccceEhhheecccceEE---------------EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee
Confidence 235667778877654 899999999999999999999999987633333677776443333
Q ss_pred EE
Q 043890 445 VQ 446 (509)
Q Consensus 445 ~~ 446 (509)
+|
T Consensus 265 ~F 266 (311)
T KOG0315|consen 265 AF 266 (311)
T ss_pred ee
Confidence 33
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=253.71 Aligned_cols=286 Identities=20% Similarity=0.323 Sum_probs=232.2
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|+++.|+|+|.+||+|+.|..|.+|+...... -...+++|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs--------- 90 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS--------- 90 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc---------
Confidence 3457999999999999999999999999999999765443 146778998
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|..+.| ..|++.+++++.|++|+.||+++|+....
T Consensus 91 ---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk-------------------------------------- 127 (338)
T KOG0265|consen 91 ---GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK-------------------------------------- 127 (338)
T ss_pred ---ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh--------------------------------------
Confidence 89999999 99999999999999999999999875443
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..+|..-|+.+.-+.-|..|+ ++ +|+++++||+++.+..
T Consensus 128 -------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-------- 168 (338)
T KOG0265|consen 128 -------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-------- 168 (338)
T ss_pred -------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh--------
Confidence 367888888888555565555 55 8999999999976543
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
........++++.|...+ ..+++|+-|+.|++||++.+.. .+++.++ ...|+.+..+|+|.+
T Consensus 169 -~t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~~lsGh------------~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 169 -KTFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LYTLSGH------------ADTITGLSLSRYGSF 230 (338)
T ss_pred -hccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eEEeecc------------cCceeeEEeccCCCc
Confidence 233457789999999998 8999999999999999998875 4555554 589999999999999
Q ss_pred EEEec-CCeEEEEECCCC---CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 353 ILSRD-YMTLKLWDINMD---SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+.+-+ |.++++||++-. .+++..+.+|..... .. ...++|+|+++++..|+.|..+++||..+..
T Consensus 231 llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe--------kn---lL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 231 LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE--------KN---LLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred cccccccceEEEEEecccCCCCceEEEeecchhhhh--------hh---cceeeccCCCCccccccccceEEEeeccccc
Confidence 99954 799999999841 344666776544322 11 1278999999999999999999999999877
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEE
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYM 506 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v 506 (509)
.+. .+.+|. ..|++++|||...+|.+++. .++|+
T Consensus 300 ~ly-klpGh~-------------------------------------------gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 300 ILY-KLPGHY-------------------------------------------GSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEE-EcCCcc-------------------------------------------eeEEEeeecCCCcEEEEeccCceeEe
Confidence 776 777776 66888999999988887776 55554
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-36 Score=265.13 Aligned_cols=386 Identities=16% Similarity=0.230 Sum_probs=269.0
Q ss_pred ccCCCcceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccC
Q 043890 13 QASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRH 92 (509)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (509)
+++.+......-..|| +.......|..-|.|+.|+|||.++|+.+.||.+.+||-.+++.
T Consensus 165 T~sdDn~v~ffeGPPF--KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------------------ 224 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPF--KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------------------ 224 (603)
T ss_pred eccCCCeEEEeeCCCe--eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------------------
Confidence 3344444444445555 22334456999999999999999999999999999999999987
Q ss_pred CcceEEeeec---cCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCC
Q 043890 93 PEFRYKTEFQ---SHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGN 169 (509)
Q Consensus 93 ~~~~~~~~~~---~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 169 (509)
+..+. +|. +.|.+|.| +||+..|++++.|.+++|||+.+.++.......... .+
T Consensus 225 -----vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v----~d 281 (603)
T KOG0318|consen 225 -----VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV----ED 281 (603)
T ss_pred -----EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCch----hc
Confidence 56666 777 89999999 999999999999999999999998766554332210 00
Q ss_pred CCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-
Q 043890 170 GNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA- 248 (509)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 248 (509)
.++ ...|- .+.+++-.-.+.+.+.+...... .+. ..+|...|+++..++++.+|++|
T Consensus 282 qqv--------G~lWq-------kd~lItVSl~G~in~ln~~d~~~------~~~-i~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 282 QQV--------GCLWQ-------KDHLITVSLSGTINYLNPSDPSV------LKV-ISGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eEE--------EEEEe-------CCeEEEEEcCcEEEEecccCCCh------hhe-ecccccceeEEEEcCCCCEEEeec
Confidence 000 00010 01112222333444544444332 122 38999999999999999999999
Q ss_pred cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 249 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
.||.|.-|+..++.... ..-..|...|.+++.+..+ .+++.+.|.++++.++..+..... ..++..
T Consensus 340 yDG~I~~W~~~~g~~~~-------~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~lg--- 405 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDR-------LAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKLG--- 405 (603)
T ss_pred cCceEEEEecCCccccc-------cccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeecC---
Confidence 89999999999876421 1236799999999998864 688999999999999976653211 111211
Q ss_pred CCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
....+++..+++.+++.+.++.|.+..-.+ .+...-..-.. .+++++|+++
T Consensus 406 ----------~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~~~y~~-----------------s~vAv~~~~~ 456 (603)
T KOG0318|consen 406 ----------SQPKGLAVLSDGGTAVVACISDIVLLQDQT--KVSSIPIGYES-----------------SAVAVSPDGS 456 (603)
T ss_pred ----------CCceeEEEcCCCCEEEEEecCcEEEEecCC--cceeecccccc-----------------ceEEEcCCCC
Confidence 233478888888777766665666654322 11111111111 1899999999
Q ss_pred EEEEeeCCCcEEEEeCCCCceee-eeeccCCCceeEEEEcCCCCCCcccceeeEe---ecCCCCCcccCCCcccccccce
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEA-TTLEASKNPMRRQVQTPSRPSRSLSSITRVV---RRGSDVPGVDTNGNSFDFTTKL 484 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i 484 (509)
.++.|+.|+.|+||.+..++... ..+..|.++++.+++||++......+..|.. +...... -.....-|+.+|
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI 533 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKI 533 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeE
Confidence 99999999999999998654222 2678899999999999999987666554432 2222111 111233468999
Q ss_pred EEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 485 LHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 485 ~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
++++|+|+..++|+|+- .+++||++
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEc
Confidence 99999999999999998 78999974
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=259.64 Aligned_cols=308 Identities=16% Similarity=0.240 Sum_probs=256.3
Q ss_pred ccccccccccCCCcceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccc
Q 043890 5 DEGAESAAQASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLER 84 (509)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~ 84 (509)
++..+-+|+.+--.+.+|-...++..+ +.+|..+|+.+-|+|+-.++++++.|++|++||..+++.
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~----l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------- 142 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQK----LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------- 142 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhh----hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh----------
Confidence 333444455554445667666555444 445999999999999999999999999999999999988
Q ss_pred cccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccch-hhhhhhccCCCC
Q 043890 85 MDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEK-KVKKIADMNVDP 163 (509)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~ 163 (509)
...++||+ ..|.+|+| +..|++|++++.|-.+++||..+. ++...
T Consensus 143 -------------e~~LrGHt------------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks------- 188 (406)
T KOG0295|consen 143 -------------ERSLRGHT------------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFFRCIKS------- 188 (406)
T ss_pred -------------hhhhhccc------------cceeEEEE--ecCccEEEecCCccchhheeHHHHHHHHHH-------
Confidence 68889999 77999999 999999999999988999999864 22221
Q ss_pred CcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC
Q 043890 164 SKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE 243 (509)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 243 (509)
+.+|...|.++.|-|.|.
T Consensus 189 --------------------------------------------------------------~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 189 --------------------------------------------------------------LIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred --------------------------------------------------------------hcCcccceeeEEEEecCC
Confidence 367888899999999999
Q ss_pred EEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeee
Q 043890 244 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILF 322 (509)
Q Consensus 244 ~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 322 (509)
+++++ .|.+|+.|++.++.+.. .+.+|...|..++.+.|| .++++++.|.++++|-+.+++. .
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~--------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~----k--- 270 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVK--------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQC----K--- 270 (406)
T ss_pred eeeecccccceeEEecccceeEE--------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchh----h---
Confidence 99999 99999999999987653 688999999999999999 9999999999999999988752 1
Q ss_pred ccccCCCCccccccccccEEEEEEecC---------------CCEEEEec-CCeEEEEECCCCCCceEEEeecccccccc
Q 043890 323 EEQEAPGSRSFFTEIIASISDIKFAKD---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
..+.+|.-+|.+++|.|. +.++++++ |++|++||+.+ +.++.++.+|..++.
T Consensus 271 ---------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr-- 338 (406)
T KOG0295|consen 271 ---------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVR-- 338 (406)
T ss_pred ---------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceee--
Confidence 123445578888888763 35888886 69999999998 799999999999976
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCC
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGS 466 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 466 (509)
.++|+|.|+||+++.+|+++++||+++++++. ++++|.
T Consensus 339 -------------~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk-~~~ah~---------------------------- 376 (406)
T KOG0295|consen 339 -------------GVAFSPGGKYILSCADDKTLRVWDLKNLQCMK-TLEAHE---------------------------- 376 (406)
T ss_pred -------------eeEEcCCCeEEEEEecCCcEEEEEeccceeee-ccCCCc----------------------------
Confidence 89999999999999999999999999999998 888776
Q ss_pred CCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 467 DVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 467 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
--+++++|+.+..++++|+- -.+.+|
T Consensus 377 ---------------hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 377 ---------------HFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred ---------------ceeEEEecCCCCceEEeccccceeeee
Confidence 33677777777778777776 566666
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.1e-38 Score=267.78 Aligned_cols=279 Identities=18% Similarity=0.339 Sum_probs=233.1
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
.-+|..|.|.|+|+.|++|+..|.+.||+...... ...+++|. ..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------------EtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------------ETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------HHHhhhhc------------cc
Confidence 46899999999999999999999999999854432 35667887 89
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
|+++.| ++++.++++|+.+|.|++|+.+-...+.+
T Consensus 141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~------------------------------------------- 175 (464)
T KOG0284|consen 141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII------------------------------------------- 175 (464)
T ss_pred ceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh-------------------------------------------
Confidence 999999 99999999999999999999875433221
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
...|...|++++|+|+...|+++ +||+|+|||....+.. ..+.+|
T Consensus 176 --------------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--------~vL~GH 221 (464)
T KOG0284|consen 176 --------------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--------RVLRGH 221 (464)
T ss_pred --------------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--------heeccC
Confidence 14455889999999999999999 9999999999876642 367899
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD- 357 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~- 357 (509)
...|.+++|+|.. .++++++.|..|++||.+++.. +.+ +.+|...|..+.|+|++.+|++++
T Consensus 222 gwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~c----l~t------------lh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 222 GWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSC----LAT------------LHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred CCCcceeccCCcc-ceeEEccCCceeEeecCCCcch----hhh------------hhhccceEEEEEEcCCCCeeEEccC
Confidence 9999999999997 8999999999999999999974 223 344568999999999999999987
Q ss_pred CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 358 YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 358 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
|..+++||+++ .+.+..+++|...+. ++.|+| ...+|.+|+.||.|..|.+...+++...-.
T Consensus 285 D~~~kv~DiR~-mkEl~~~r~Hkkdv~---------------~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~- 347 (464)
T KOG0284|consen 285 DQSCKVFDIRT-MKELFTYRGHKKDVT---------------SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP- 347 (464)
T ss_pred CceEEEEehhH-hHHHHHhhcchhhhe---------------eeccccccccceeeccCCCceEEEeccccccccCCCc-
Confidence 69999999996 688899999987765 899999 456788999999999999984444431112
Q ss_pred CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 437 SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 437 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.|...|++++|||-|.+|++|+. .+++.|.
T Consensus 348 ------------------------------------------AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 348 ------------------------------------------AHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ------------------------------------------ccccceeeeeccccceeEeecCCCcceeeec
Confidence 24578999999999999999988 6777774
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-36 Score=273.43 Aligned_cols=388 Identities=17% Similarity=0.235 Sum_probs=282.0
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
...+|.+.|.++.|+.|.++|++|+.|-.++||.++..+. -....+.+|.
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---------------------~~~~~l~gHk--------- 189 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---------------------LFTYALNGHK--------- 189 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---------------------cceEeccCCC---------
Confidence 4467999999999999999999999999999999986654 0146778898
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhh-----c------------cCCCCCcc--------cCC
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIA-----D------------MNVDPSKA--------VGN 169 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~------------~~~~~~~~--------~~~ 169 (509)
+.|-+.-| ..+...+++.+.||.+.+|.....-..... . -...++.+ ..+
T Consensus 190 ---d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 190 ---DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred ---cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 77888888 889999999999999999987721000000 0 00000000 000
Q ss_pred -CCcccCC-----------------------------------CCccCCccccCCCCCcceecCCCCCCCcccccccccc
Q 043890 170 -GNVASSS-----------------------------------NNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSN 213 (509)
Q Consensus 170 -~~~~~~~-----------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 213 (509)
.++.+.. ..+..+.|+..| .-+.+.++..+.+-+|+..++
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG----DWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG----DWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC----CEEEEcCCccceEEEEEeecc
Confidence 0000000 000111111111 113344455567777775544
Q ss_pred ccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCC
Q 043890 214 ETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 292 (509)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 292 (509)
.-... +.+|...+++++++|||+++++| +||.|+|||..++-+.. ++..|...|+.+.|+..+
T Consensus 341 sYVlK-------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v--------TFteHts~Vt~v~f~~~g- 404 (893)
T KOG0291|consen 341 SYVLK-------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV--------TFTEHTSGVTAVQFTARG- 404 (893)
T ss_pred ceeee-------ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE--------EeccCCCceEEEEEEecC-
Confidence 32211 37899999999999999999999 99999999999876654 688999999999999998
Q ss_pred cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C-CeEEEEECCCCC
Q 043890 293 NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-MTLKLWDINMDS 370 (509)
Q Consensus 293 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~ 370 (509)
+.+++++-||+|+.||+...+. .++|..+.. ....+++..|.|.++++|+ | -.|.+|++++ +
T Consensus 405 ~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-G 468 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-G 468 (893)
T ss_pred CEEEEeecCCeEEeeeecccce----eeeecCCCc-----------eeeeEEEEcCCCCEEEeeccceEEEEEEEeec-C
Confidence 9999999999999999998764 577766542 3567888999999999986 5 7899999998 8
Q ss_pred CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCC
Q 043890 371 GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
+.+..+.+|++++. +++|+|++..|++++.|.+|++||+-.......++ .+...+..++|+|++
T Consensus 469 qllDiLsGHEgPVs---------------~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 469 QLLDILSGHEGPVS---------------GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDG 532 (893)
T ss_pred eeeehhcCCCCcce---------------eeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCC
Confidence 99999999999876 89999999999999999999999997543222133 356789999999999
Q ss_pred CCCccc---ceeeEeecCCCCCcccCCCc------cc----------ccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 451 PSRSLS---SITRVVRRGSDVPGVDTNGN------SF----------DFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 451 ~~~~~~---~~~~~~~~~~~~~~~~~~~~------~~----------~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
+...+. +-...|+...-.+...+.|. .. .-.+..+.+.+++||..++.|+. +.+++|++
T Consensus 533 ~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 986544 33455553333333222222 11 11367899999999999888887 89999975
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=254.01 Aligned_cols=288 Identities=15% Similarity=0.261 Sum_probs=243.4
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+.|.|+++.|-.+++++|+.|++++|||+.+++. ..++.||-
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------------kltltGhi----------- 193 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------------KLTLTGHI----------- 193 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------EEeecchh-----------
Confidence 45999999999999999999999999999999999988 78899998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|..+++ ++...|+++++.|+.|+.||++..+.+..
T Consensus 194 -~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~---------------------------------------- 230 (460)
T KOG0285|consen 194 -ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRH---------------------------------------- 230 (460)
T ss_pred -heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHH----------------------------------------
Confidence 78999999 88999999999999999999998876543
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
| .+|-..|.|++.+|.-..|++| .|.++++||+++...+. .+
T Consensus 231 ----------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~--------~l 273 (460)
T KOG0285|consen 231 ----------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH--------VL 273 (460)
T ss_pred ----------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEE--------Ee
Confidence 2 7888999999999999999999 99999999999876553 67
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.+|..+|.++.+.|-+ -.+++|+.|++|++||++.++. ..+ +..|...+.+++.+|....+|+
T Consensus 274 ~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt----~~t------------lt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKT----MIT------------LTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred cCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCce----eEe------------eecccceeeEEecCCchhhhhc
Confidence 8999999999999987 7899999999999999999874 222 3445578999999999999999
Q ss_pred ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 356 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 356 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
++-..|+-|++.. +..+..+.+|...+. .++...|+ ++++|+++|.+.+||.++|...+ .++
T Consensus 337 as~dnik~w~~p~-g~f~~nlsgh~~iin---------------tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ-~~~ 398 (460)
T KOG0285|consen 337 ASPDNIKQWKLPE-GEFLQNLSGHNAIIN---------------TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQ-RGQ 398 (460)
T ss_pred cCCccceeccCCc-cchhhccccccceee---------------eeeeccCc-eEEEcCCceEEEEEecCcCcccc-ccc
Confidence 9888999999996 777888888887654 77777665 67889999999999999887654 322
Q ss_pred cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 436 ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.-. ++..+. -+..|.+.+|...+..|++|.. .+|.+|.
T Consensus 399 t~v------------------------------qpGSl~-----sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 399 TIV------------------------------QPGSLE-----SEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccc------------------------------cCCccc-----cccceeEEeecccCceEEeccCCcceEEEe
Confidence 111 111122 2467999999999999998887 6777774
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-36 Score=238.53 Aligned_cols=269 Identities=17% Similarity=0.278 Sum_probs=223.9
Q ss_pred ecc-cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEV-DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~-~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
+|. ..|+.++..|+++.||+++.. .||+||+.+... +| ..++.+|.
T Consensus 37 qh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np-----------------~P----v~t~e~h~----------- 83 (311)
T KOG0315|consen 37 QHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP-----------------NP----VATFEGHT----------- 83 (311)
T ss_pred ecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC-----------------Cc----eeEEeccC-----------
Confidence 454 689999999999999999965 799999998876 22 68899998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|+++.| ..+|+.+++|+.||+++|||++...+...
T Consensus 84 -kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~---------------------------------------- 120 (311)
T KOG0315|consen 84 -KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRN---------------------------------------- 120 (311)
T ss_pred -CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchh----------------------------------------
Confidence 77999999 89999999999999999999987432221
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
..|..+|+++..+|+...|++| .+|.|++||+........ .+
T Consensus 121 ------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-------li 163 (311)
T KOG0315|consen 121 ------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-------LI 163 (311)
T ss_pred ------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-------cC
Confidence 3466889999999999999999 899999999997644332 22
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
..-...|.++...|+| .+++.+...|...+|++.+.+.. ..+. +...+..|.+-+..+.+|||+++|++
T Consensus 164 Pe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s~l~------P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----SELE------PVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred CCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcc----ccce------EhhheecccceEEEEEECCCCcEEEe
Confidence 3345789999999999 99999999999999999885431 1111 12236778899999999999999999
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
++ |.+++||+.....+....+.+|..++. +++||.||+||+||+.|+.+++|++..++.+. ..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvW---------------dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~-qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVW---------------DCAFSADGEYLVTASSDHTARLWDLSAGKEVR-QY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEE---------------eeeeccCccEEEecCCCCceeecccccCceee-ec
Confidence 85 699999999975466677888888766 99999999999999999999999999999998 89
Q ss_pred ccCCCceeEEEE
Q 043890 435 EASKNPMRRQVQ 446 (509)
Q Consensus 435 ~~~~~~v~~~~~ 446 (509)
.+|..+..+++.
T Consensus 297 ~gh~K~~vc~~l 308 (311)
T KOG0315|consen 297 QGHHKAAVCVAL 308 (311)
T ss_pred CCcccccEEEEe
Confidence 999877666544
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-36 Score=244.30 Aligned_cols=267 Identities=16% Similarity=0.306 Sum_probs=214.5
Q ss_pred eeEEeec---cccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcce
Q 043890 20 LEWKFSQ---VFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFR 96 (509)
Q Consensus 20 ~~~~~~~---~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (509)
..|++.. .||.+.+ .+.||...|..+..+++|++.++++.|+.+++||+.+++.
T Consensus 41 i~W~L~~dd~~~G~~~r-~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---------------------- 97 (315)
T KOG0279|consen 41 IVWKLTSDDIKYGVPVR-RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---------------------- 97 (315)
T ss_pred EEEEeccCccccCceee-eeeccceEecceEEccCCceEEeccccceEEEEEecCCcE----------------------
Confidence 5577764 3443322 3567999999999999999999999999999999999877
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSS 176 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (509)
...|.+|. ..|.+++| ++|.+.|++|+.|++|++|++.........
T Consensus 98 -t~~f~GH~------------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~------------------- 143 (315)
T KOG0279|consen 98 -TRRFVGHT------------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIH------------------- 143 (315)
T ss_pred -EEEEEecC------------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEe-------------------
Confidence 78999999 77999999 999999999999999999998765322110
Q ss_pred CCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeE
Q 043890 177 NNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRI 253 (509)
Q Consensus 177 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i 253 (509)
-..+.+.|.|+.|+|+ ..+++++ .|++|
T Consensus 144 -------------------------------------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 144 -------------------------------------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred -------------------------------------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 0233678999999998 6778888 89999
Q ss_pred EEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccc
Q 043890 254 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSF 333 (509)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (509)
++||+++.+.. ..+.+|++.++.++++||| .++++|+.||.+.+||++.++. ++.++..
T Consensus 175 KvWnl~~~~l~--------~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~a~-------- 233 (315)
T KOG0279|consen 175 KVWNLRNCQLR--------TTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLEAF-------- 233 (315)
T ss_pred EEEccCCcchh--------hccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEeccCC--------
Confidence 99999976532 3678899999999999999 9999999999999999999874 4555533
Q ss_pred cccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 043890 334 FTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG 413 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 413 (509)
..|.+++|+|+...|+.+.+..|+|||+.+ ...+..++....... ....... ..+++|++||..|++|
T Consensus 234 -----~~v~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s--~~~~~~~----clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 234 -----DIVNSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGPS--SKAGDPI----CLSLAWSADGQTLFAG 301 (315)
T ss_pred -----CeEeeEEecCCceeEeeccCCceEEEeccc-hhhhhhccccccccc--cccCCcE----EEEEEEcCCCcEEEee
Confidence 689999999999899888888899999997 666666553221110 0000001 1278999999999999
Q ss_pred eCCCcEEEEeCC
Q 043890 414 SYSNLFRVFGCA 425 (509)
Q Consensus 414 ~~dg~i~iw~~~ 425 (509)
-.|+.|++|.+.
T Consensus 302 ~td~~irv~qv~ 313 (315)
T KOG0279|consen 302 YTDNVIRVWQVA 313 (315)
T ss_pred ecCCcEEEEEee
Confidence 999999999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-36 Score=278.64 Aligned_cols=265 Identities=18% Similarity=0.289 Sum_probs=217.0
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCC----CCcccccc----ccccccccCCcceEEeeeccCCcchhhc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDH----GGSRRDLE----RMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
...++|+.|++|+.+||.|-.|..|++|.+...+.. ...+..+. .....+-...+.....++.||.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 468999999999999999999999999999854320 00111110 0000111111122345688898
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
++|.+..| +|+.++|++++.|+++++|.+.+..+.-
T Consensus 452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V------------------------------------ 487 (707)
T KOG0263|consen 452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------------ 487 (707)
T ss_pred ------Cceeeeee--cccccceeeccCCcceeeeecccceeEE------------------------------------
Confidence 89999999 9999999999999999999998765321
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
.| .+|..+|+++.|+|.|-+||++ .|++.++|........
T Consensus 488 --------------------------------~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl------ 528 (707)
T KOG0263|consen 488 --------------------------------IY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL------ 528 (707)
T ss_pred --------------------------------Ee-cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch------
Confidence 23 7999999999999999999999 9999999999875432
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
..+.+|-+.|.|+.|+|+. +++++|+.|.+|++||..++.. ++.|.+ |.++|.+++|||+|
T Consensus 529 --RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRiF~G------------H~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 529 --RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRIFTG------------HKGPVTALAFSPCG 589 (707)
T ss_pred --hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEEecC------------CCCceEEEEEcCCC
Confidence 3678999999999999998 9999999999999999999975 566654 45899999999999
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
++|++|+ |+.|.+||+.+ +.++..+.+|.+.+. ++.|+.||..||+|+.|++|++||+..-.
T Consensus 590 r~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~---------------SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIY---------------SLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ceEeecccCCcEEEEEcCC-CcchhhhhcccCcee---------------EEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999997 49999999997 789999999977654 99999999999999999999999987543
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=264.73 Aligned_cols=386 Identities=16% Similarity=0.241 Sum_probs=271.0
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
-..+|.|+.|||||+++|+|.. +.+.||........ .++ -......+.+|. .
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~--------------~~~-pFvl~r~~~g~f------------d 146 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN--------------EFN-PFVLHRTYLGHF------------D 146 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc--------------ccC-cceEeeeecCCc------------c
Confidence 4689999999999999999885 48999997654330 011 123356777887 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhh--ccCCCCCcc---cCC-CCcccCCCCccCCccccC-----
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIA--DMNVDPSKA---VGN-GNVASSSNNVSPKPYLAN----- 187 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~----- 187 (509)
.|.+|.| +.|.++|++++.|.++++|.++..+..... ..+...+.. ..+ -.++.-..+.....|--+
T Consensus 147 di~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 147 DITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPE 224 (893)
T ss_pred ceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcc
Confidence 7999999 999999999999999999999876543222 222222111 000 001111111111112111
Q ss_pred -------------------CCC---------------------C-------cceecCCCCCCCccccccccccccceeee
Q 043890 188 -------------------GGS---------------------P-------SKEFSFPPGGIPSLRLPTVTSNETSLVAR 220 (509)
Q Consensus 188 -------------------g~~---------------------~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 220 (509)
+.. + ...+++.+=..+...++++.....
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l----- 299 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL----- 299 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-----
Confidence 000 0 000011111111122222222111
Q ss_pred eeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEE
Q 043890 221 CRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 298 (509)
Q Consensus 221 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~ 298 (509)
+.. +.-...+|..++|+..|.++|.| .=|.+.||+.++...++ ..++|...+++++++||| +++|+|
T Consensus 300 -ih~-LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG 368 (893)
T KOG0291|consen 300 -IHS-LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--------KQQGHSDRITSLAYSPDG-QLIATG 368 (893)
T ss_pred -EEE-eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--------eccccccceeeEEECCCC-cEEEec
Confidence 111 12233568899999999999998 46899999999876654 457899999999999999 999999
Q ss_pred EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 299 SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 299 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
+.||.|+|||.+.+-. +.+|.. |.+.|+.+.|+..|+.+++++ ||+|+.||+.. .+..+++.
T Consensus 369 ~eDgKVKvWn~~SgfC----~vTFte------------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft 431 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFC----FVTFTE------------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFT 431 (893)
T ss_pred cCCCcEEEEeccCceE----EEEecc------------CCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeec
Confidence 9999999999998753 445544 558999999999999999986 79999999995 78888888
Q ss_pred ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-cEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc
Q 043890 378 VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-LFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS 456 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 456 (509)
....... .+++..|.|.+++.|+.|. .|.+|++++|+++. ++.+|.+||..++|+|.+.....+
T Consensus 432 ~P~p~Qf--------------scvavD~sGelV~AG~~d~F~IfvWS~qTGqllD-iLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 432 SPEPIQF--------------SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD-ILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred CCCceee--------------eEEEEcCCCCEEEeeccceEEEEEEEeecCeeee-hhcCCCCcceeeEEccccCeEEec
Confidence 7654321 1788889999999999886 79999999999998 999999999999999999875433
Q ss_pred ---ceeeEee---cCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 457 ---SITRVVR---RGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 457 ---~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
..+|.|+ +..... .+.+...+..++|+|+|+.||+++- +.|-+|++
T Consensus 497 SWDkTVRiW~if~s~~~vE-------tl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVE-------TLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cccceEEEEEeeccCceee-------eEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 4566665 211222 3334567999999999999999998 68888874
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=266.32 Aligned_cols=271 Identities=16% Similarity=0.221 Sum_probs=232.7
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+..|.++|.++.|+|....++++-.+|.|.|||.++... ..+++-.+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~---------- 55 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE---------- 55 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc----------
Confidence 345899999999999999999999999999999998876 56666555
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
-+|++..| -+..+.+++|+.|..|+||+.++++.++.
T Consensus 56 --~PvRa~kf--iaRknWiv~GsDD~~IrVfnynt~ekV~~--------------------------------------- 92 (794)
T KOG0276|consen 56 --VPVRAAKF--IARKNWIVTGSDDMQIRVFNYNTGEKVKT--------------------------------------- 92 (794)
T ss_pred --cchhhhee--eeccceEEEecCCceEEEEecccceeeEE---------------------------------------
Confidence 67999999 77888999999999999999998864332
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|.+-|++++.+|...+++++ +|-.|++||.+..-.+. +.
T Consensus 93 ------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~-------qt 135 (794)
T KOG0276|consen 93 ------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE-------QT 135 (794)
T ss_pred ------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee-------eE
Confidence 48899999999999999999999 99999999999643332 37
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--CCE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--GRH 352 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~ 352 (509)
+++|...|.+++|+|..++.|++++-|++|++|.+..... ..+++ +|..+|+++.|-+- ..+
T Consensus 136 feGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~------------gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLE------------GHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred EcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeee------------ccccCcceEEeccCCCcce
Confidence 8999999999999999889999999999999999987652 34444 45589999999884 469
Q ss_pred EEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|++|+| ..++|||.++ ..+++++.+|...+. .++|+|.-..+++|++||+++||+..+-++..
T Consensus 200 lIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs---------------~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQT-KSCVQTLEGHTNNVS---------------FVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred EEecCCCceEEEeecch-HHHHHHhhcccccce---------------EEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 999865 9999999998 799999999998765 89999999999999999999999999887776
Q ss_pred eeeccCCCceeEEEEcCCCCC
Q 043890 432 TTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~ 452 (509)
++.-..+.+++++..+....
T Consensus 264 -tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 264 -TLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred -hhhcCCceEEEEeecCCCCe
Confidence 77777778888776655444
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=235.02 Aligned_cols=283 Identities=19% Similarity=0.315 Sum_probs=238.0
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+-.|.++|.++.|+-+|+|.++++.|.+|++|+...+.. +.++.+|.
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l-----------------------iktYsghG---------- 59 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL-----------------------IKTYSGHG---------- 59 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccce-----------------------eeeecCCC----------
Confidence 345899999999999999999999999999999998887 88999998
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|..++. +.|+..|++|+.|+.+.+||+++|+....
T Consensus 60 --~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr--------------------------------------- 96 (307)
T KOG0316|consen 60 --HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR--------------------------------------- 96 (307)
T ss_pred --ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee---------------------------------------
Confidence 56999998 88999999999999999999999874432
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|...|+.+.|+.+...+++| -|..+++||-++..... .+.
T Consensus 97 ------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP------iQi 140 (307)
T KOG0316|consen 97 ------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP------IQI 140 (307)
T ss_pred ------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc------cch
Confidence 38999999999999999999999 89999999999754321 134
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+......|.++..+. ..+++|+.||+++.||++.+++. ..+- ..+|++++|++|++..+
T Consensus 141 ldea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~----sDy~--------------g~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLS----SDYF--------------GHPITSVSFSKDGNCSL 199 (307)
T ss_pred hhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceee----hhhc--------------CCcceeEEecCCCCEEE
Confidence 566678899998874 56999999999999999999752 1111 25899999999999888
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 433 (509)
+++ ++++++.|-.+ ++.++.+++|.....++ +++++.....+++|++||.|++||+..+..+. .
T Consensus 200 a~~l~stlrLlDk~t-GklL~sYkGhkn~eykl-------------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s-k 264 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKL-------------DCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS-K 264 (307)
T ss_pred Eeeccceeeecccch-hHHHHHhcccccceeee-------------eeeecccceeEEeccCCceEEEEEeccceeee-e
Confidence 875 69999999997 89999999997765433 78888888899999999999999999888776 5
Q ss_pred eccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 434 LEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
+..+. .-.|.++++||...-|+++.......|+
T Consensus 265 ~~~~~------------------------------------------~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 265 LSVVS------------------------------------------TVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred eccCC------------------------------------------ceeEEeeecccCccceeEecCCceecee
Confidence 55554 1236889999999888888887777775
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.2e-35 Score=247.80 Aligned_cols=335 Identities=13% Similarity=0.151 Sum_probs=259.0
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+..|+++|.+++.+|+.+++|||+.|..-.||+..++.. ...+.+|.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK---------- 106 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK---------- 106 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC----------
Confidence 456999999999999999999999999999999999987 78899999
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|+++.| +.+|.+||||..+|.|+||...++.....+..... ...=+.|.|.+. +
T Consensus 107 --DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~---------------dieWl~WHp~a~-----i 162 (399)
T KOG0296|consen 107 --DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE---------------DIEWLKWHPRAH-----I 162 (399)
T ss_pred --CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeecccC---------------ceEEEEeccccc-----E
Confidence 88999999 99999999999999999999999876554332222 223355667554 4
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
++.+..++.+-.|.+.+... .+. +.+|..++++=.|.|+|+.++++ .||+|++|+..++.+...+.
T Consensus 163 llAG~~DGsvWmw~ip~~~~------~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~------ 229 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQAL------CKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT------ 229 (399)
T ss_pred EEeecCCCcEEEEECCCcce------eeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec------
Confidence 47788999999999877522 223 48999999999999999999999 99999999999987665431
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
........++.++..+ ..++.|..++.+++-+..+++.. ..... ..+............|.++.++..-.+.|
T Consensus 230 -~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv----~~~n~-~~~~l~~~~e~~~esve~~~~ss~lpL~A 302 (399)
T KOG0296|consen 230 -QAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVV----NCNNG-TVPELKPSQEELDESVESIPSSSKLPLAA 302 (399)
T ss_pred -ccccCcCCcccccccc-ceeEeccCCccEEEEccccceEE----EecCC-CCccccccchhhhhhhhhcccccccchhh
Confidence 1113456678888887 88999999999999988888742 22221 11111111111123444555555666777
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 433 (509)
+|+ ||+|.|||+.. ..++..-.|...+. .+.|-+ ..+|++++.||.|++||.++|+++. +
T Consensus 303 ~G~vdG~i~iyD~a~--~~~R~~c~he~~V~---------------~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~-~ 363 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAA--STLRHICEHEDGVT---------------KLKWLN-TDYLLTACANGKVRQWDARTGQLKF-T 363 (399)
T ss_pred cccccceEEEEeccc--chhheeccCCCceE---------------EEEEcC-cchheeeccCceEEeeeccccceEE-E
Confidence 776 69999999985 33444445665544 899988 7899999999999999999999998 8
Q ss_pred eccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 434 LEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
+.+|. ..|.+++.+|+++++++++. +..+||.+
T Consensus 364 y~GH~-------------------------------------------~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 364 YTGHQ-------------------------------------------MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EecCc-------------------------------------------hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 88886 67888999999999999888 78888853
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.4e-35 Score=253.85 Aligned_cols=276 Identities=19% Similarity=0.338 Sum_probs=226.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
....|++++|+.+|.+||+|..||.+++|+...... .++..|. +
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------------~tl~~Hk------------g 277 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------------STLGQHK------------G 277 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------------hhhhccC------------C
Confidence 457899999999999999999999999999886654 6778888 8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
+|.+++| +..|.||++++.|+++.+||..++...+.
T Consensus 278 PI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~------------------------------------------ 313 (524)
T KOG0273|consen 278 PIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQ------------------------------------------ 313 (524)
T ss_pred ceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEe------------------------------------------
Confidence 9999999 99999999999999999999988764433
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+.-|..+..++.|-.+. .|+++ .|+.|+++.+....+. .++.+
T Consensus 314 ---------------------------f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~--------~t~~G 357 (524)
T KOG0273|consen 314 ---------------------------FEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPV--------KTFIG 357 (524)
T ss_pred ---------------------------eeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcc--------eeeec
Confidence 24455555678886554 56666 8999999999876644 36778
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC-------
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG------- 350 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~------- 350 (509)
|.+.|.++.|+|.+ .+|++++.|++++||.+..... ... +.+|...|..+.|+|+|
T Consensus 358 H~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~------------l~~Hskei~t~~wsp~g~v~~n~~ 420 (524)
T KOG0273|consen 358 HHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHD------------LQAHSKEIYTIKWSPTGPVTSNPN 420 (524)
T ss_pred ccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhh------------hhhhccceeeEeecCCCCccCCCc
Confidence 99999999999999 9999999999999999887653 222 44556789999999964
Q ss_pred --CEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 351 --RHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 351 --~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
..++++ .|++|++||+.. +.++..+..|..++. +++|+|+|+|||+|+.||.|++|+.+++
T Consensus 421 ~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVy---------------svafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVY---------------SVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCceEEEeecCCeEEEEEccC-CceeEeeccCCCceE---------------EEEecCCCcEEEecCCCCeeEeccccch
Confidence 456665 479999999996 899999988987755 9999999999999999999999999999
Q ss_pred ceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEE
Q 043890 428 STEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYM 506 (509)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v 506 (509)
+.++ .+.+ +..|..++|+.+|..|.++-. +.+++
T Consensus 485 ~l~~-s~~~--------------------------------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 485 KLVK-SYQG--------------------------------------------TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred heeE-eecC--------------------------------------------CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 8876 3332 245888999998877765544 66666
Q ss_pred Ee
Q 043890 507 YY 508 (509)
Q Consensus 507 ~~ 508 (509)
.+
T Consensus 520 ld 521 (524)
T KOG0273|consen 520 LD 521 (524)
T ss_pred EE
Confidence 43
No 25
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-35 Score=251.19 Aligned_cols=286 Identities=18% Similarity=0.337 Sum_probs=233.9
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+..|++.|.-+.||++|+|||+++.|.+..+|.+..... .++..++.+|.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--------------------~kl~~tlvgh~---------- 269 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--------------------FKLKKTLVGHS---------- 269 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--------------------eeeeeeeeccc----------
Confidence 456999999999999999999999999999999875433 23467888898
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
.+|..+.| +||.++|++|+.|..+.+||+.+|.......
T Consensus 270 --~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~------------------------------------- 308 (519)
T KOG0293|consen 270 --QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYP------------------------------------- 308 (519)
T ss_pred --CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcc-------------------------------------
Confidence 88999999 9999999999999999999999998665422
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.++...+.+++|.|||..+++| .|+.+..||++... .. .
T Consensus 309 -------------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~--------~ 348 (519)
T KOG0293|consen 309 -------------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LG--------N 348 (519)
T ss_pred -------------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hh--------c
Confidence 3455678899999999999999 89999999998543 11 1
Q ss_pred cCC-CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 275 MED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 275 ~~~-~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.++ ....|.+++..+|| +.+++.+.|..|++|+..+... ......+ .+|++++.|.|++++
T Consensus 349 W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~d----r~lise~-------------~~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVD----RGLISEE-------------QPITSFSISKDGKLA 410 (519)
T ss_pred ccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhh----hcccccc-------------CceeEEEEcCCCcEE
Confidence 222 23568999999999 8888888999999999887542 1122222 589999999999999
Q ss_pred EEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 354 LSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 354 ~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
++. .+..+++||+.. .+.+..+.+|......+ .-||.. +..++|+|++|+.|+||+..+|+++.
T Consensus 411 LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiI-------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFII-------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred EEEcccCeeEEeecch-hhHHHHhhcccccceEE-------------EeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 886 569999999994 78888998887654322 456654 55899999999999999999999998
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCC-cEEEEEec-CceEEEe
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTE-NSIACAAA-NSLYMYY 508 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la~~~~-~~i~v~~ 508 (509)
++.+|. +.|++++|+|.. .++|++++ ++|+||-
T Consensus 477 -~LsGHs-------------------------------------------~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 477 -VLSGHS-------------------------------------------KTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred -eecCCc-------------------------------------------ceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 888886 668999999987 57788887 8999995
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=238.85 Aligned_cols=245 Identities=24% Similarity=0.426 Sum_probs=210.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
....|..++|+|.|+++|.|+-|+...||++.+.+.. ...+...++.+|+ +
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~-----------------g~~~v~r~l~gHt------------g 146 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE-----------------GNVRVSRELAGHT------------G 146 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEeccccccc-----------------ccceeeeeecCcc------------c
Confidence 4688999999999999999999999999999866320 0112357789998 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
-+.+..| .. ...|+|++.|.+..+||+++++....
T Consensus 147 ylScC~f--~d-D~~ilT~SGD~TCalWDie~g~~~~~------------------------------------------ 181 (343)
T KOG0286|consen 147 YLSCCRF--LD-DNHILTGSGDMTCALWDIETGQQTQV------------------------------------------ 181 (343)
T ss_pred eeEEEEE--cC-CCceEecCCCceEEEEEcccceEEEE------------------------------------------
Confidence 7999999 54 55899999999999999998864332
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+.+|.+.|.+++++| +++.|++| .|+..++||++.+... +.+.
T Consensus 182 ---------------------------f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~--------qtF~ 226 (343)
T KOG0286|consen 182 ---------------------------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV--------QTFE 226 (343)
T ss_pred ---------------------------ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee--------Eeec
Confidence 489999999999999 89999999 9999999999988654 3789
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|...|+++.|.|+| .-|++|+.|++.++||+|..+. +..+.... ...+|++++||..|++|++|
T Consensus 227 ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~----~a~ys~~~----------~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 227 GHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE----LAVYSHDS----------IICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred ccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE----EeeeccCc----------ccCCceeEEEcccccEEEee
Confidence 999999999999999 9999999999999999999774 44454322 12689999999999999997
Q ss_pred -cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 357 -DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 357 -~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
.|..+.+||.-. .+.+..+.+|+..+. ++..+|||..|++|+.|.+++||.
T Consensus 292 y~d~~c~vWDtlk-~e~vg~L~GHeNRvS---------------cl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 292 YDDFTCNVWDTLK-GERVGVLAGHENRVS---------------CLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ecCCceeEeeccc-cceEEEeeccCCeeE---------------EEEECCCCcEEEecchhHheeecC
Confidence 469999999986 788899999998765 999999999999999999999994
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.8e-35 Score=276.70 Aligned_cols=289 Identities=24% Similarity=0.452 Sum_probs=236.9
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|...|.|+.|+++|++|++++.++.+++|+....+. .....+.+|. .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~ 204 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R 204 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence 478999999999999999999999999999966551 0145557777 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccch-hhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEK-KVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
.|++++| +|+++++++++.|++|+|||+... ..
T Consensus 205 ~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~-------------------------------------------- 238 (456)
T KOG0266|consen 205 GVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRN-------------------------------------------- 238 (456)
T ss_pred ceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeE--------------------------------------------
Confidence 8999999 999999999999999999999432 22
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.++ +.+|...|++++|+|+++++++| .|++|++||+++++.. ..+.
T Consensus 239 ------------------------~~~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~--------~~l~ 285 (456)
T KOG0266|consen 239 ------------------------LKT-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV--------RKLK 285 (456)
T ss_pred ------------------------EEE-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE--------Eeee
Confidence 223 37999999999999999999999 9999999999986644 2678
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|...|++++|++++ ++|++++.|+.|++||+.++... ..+.+..... .. .++.+.|+|++++++++
T Consensus 286 ~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~---------~~-~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAEN---------SA-PVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCC---------CC-ceeEEEECCCCcEEEEe
Confidence 999999999999999 99999999999999999998731 0223333221 11 58999999999999998
Q ss_pred cC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 DY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
.+ +.+++||+.. ......+.+|..... + +++...++.+.++++|+.|+.|++|++.++..+. .++
T Consensus 353 ~~d~~~~~w~l~~-~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~-~l~ 418 (456)
T KOG0266|consen 353 SLDRTLKLWDLRS-GKSVGTYTGHSNLVR---------C---IFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ-RLE 418 (456)
T ss_pred cCCCeEEEEEccC-CcceeeecccCCcce---------e---EecccccCCCCeEEEEeCCceEEEEeCCccchhh-hhc
Confidence 64 8999999996 788888888876421 1 2256668899999999999999999999988887 777
Q ss_pred cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe---cCceEEEe
Q 043890 436 ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA---ANSLYMYY 508 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~---~~~i~v~~ 508 (509)
+|. ...+..++|+|..+++++++ ++.+++|.
T Consensus 419 ~h~------------------------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 419 GHS------------------------------------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCC------------------------------------------CCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 773 25578889999999999887 36777774
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.2e-36 Score=260.07 Aligned_cols=291 Identities=16% Similarity=0.258 Sum_probs=235.2
Q ss_pred ccccCcceecccceEEEEECC-CCCeEEeecCCCeEEEEEccC-CCCCCCccccccccccccccCCcceEEeeeccCCcc
Q 043890 30 ERTAGEEVQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTD-TKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPE 107 (509)
Q Consensus 30 ~~~~~~~~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 107 (509)
.+....+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.+ +++|.+|.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-----------------------lrtf~gH~-- 258 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-----------------------LRTFKGHR-- 258 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-----------------------ehhhhcch--
Confidence 344566678999999999999 799999999999999999987 444 78999999
Q ss_pred hhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccC
Q 043890 108 FDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLAN 187 (509)
Q Consensus 108 ~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (509)
.+|.+++| +++|..|++++.|+.|++||+++|++...+
T Consensus 259 ----------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f------------------------------ 296 (503)
T KOG0282|consen 259 ----------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRF------------------------------ 296 (503)
T ss_pred ----------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEE------------------------------
Confidence 88999999 999999999999999999999999754331
Q ss_pred CCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCcee
Q 043890 188 GGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF 265 (509)
Q Consensus 188 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~ 265 (509)
.....+.|+.|+|++ +.|++| .|+.|+.||+++++.+
T Consensus 297 ----------------------------------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv- 335 (503)
T KOG0282|consen 297 ----------------------------------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV- 335 (503)
T ss_pred ----------------------------------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH-
Confidence 122347899999998 778888 9999999999998744
Q ss_pred eEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE
Q 043890 266 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
+.+..|-+.|..+.|-+++ +.+++++.|+.++||+.+..-.. +..... +.-...++.
T Consensus 336 -------qeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~i----k~i~~~-----------~~hsmP~~~ 392 (503)
T KOG0282|consen 336 -------QEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPI----KNIADP-----------EMHTMPCLT 392 (503)
T ss_pred -------HHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccc----hhhcch-----------hhccCccee
Confidence 3667789999999999998 99999999999999999877532 111111 013567899
Q ss_pred EecCCCEEEEec-CCeEEEEECCCCC--CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEE
Q 043890 346 FAKDGRHILSRD-YMTLKLWDINMDS--GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 346 ~s~~~~~l~s~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
.+|+++++++-+ ++.|.||.+.... ...+.+.+|...-.. ..+.|||||++|++|+.||.+++|
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSDGKVNFW 459 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCCccEEEe
Confidence 999999999865 6999999876422 223456666543221 178999999999999999999999
Q ss_pred eCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCC-cEEEEEec
Q 043890 423 GCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTE-NSIACAAA 501 (509)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la~~~~ 501 (509)
|.++-+++. .+++|. +.+..+.|||.. ..+|+++-
T Consensus 460 dwkt~kl~~-~lkah~-------------------------------------------~~ci~v~wHP~e~Skvat~~w 495 (503)
T KOG0282|consen 460 DWKTTKLVS-KLKAHD-------------------------------------------QPCIGVDWHPVEPSKVATCGW 495 (503)
T ss_pred echhhhhhh-ccccCC-------------------------------------------cceEEEEecCCCcceeEeccc
Confidence 999988887 777775 667888899987 45666665
Q ss_pred -CceEEEe
Q 043890 502 -NSLYMYY 508 (509)
Q Consensus 502 -~~i~v~~ 508 (509)
|.|++|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 8899885
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-34 Score=229.98 Aligned_cols=294 Identities=14% Similarity=0.306 Sum_probs=221.0
Q ss_pred ceecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee-ccCCcchhhccc
Q 043890 36 EVQEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QSHEPEFDYLKS 113 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 113 (509)
+.+|.++|..++|+|- |.+||+++.|..|++|+...+.. +.....+ .+|+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s--------------------~~ck~vld~~hk-------- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS--------------------WTCKTVLDDGHK-------- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc--------------------EEEEEeccccch--------
Confidence 4569999999999998 99999999999999999986332 1122222 3666
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|++++| +|.|++|++|+.|.++.||.-..++...+
T Consensus 62 ----rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv------------------------------------- 98 (312)
T KOG0645|consen 62 ----RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECV------------------------------------- 98 (312)
T ss_pred ----heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEE-------------------------------------
Confidence 78999999 99999999999999999999876653322
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
.+ +.+|...|.+++|+++|++||++ .|..|-||.+...... .+.
T Consensus 99 -----------------------------~~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-ec~---- 143 (312)
T KOG0645|consen 99 -----------------------------AT-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-ECI---- 143 (312)
T ss_pred -----------------------------ee-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE-EEE----
Confidence 12 48999999999999999999999 9999999999854432 221
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
..++.|...|..+.|+|.. .+|++++.|++|++|+-.... -+..+.++ .+|...|.+++|++.|..
T Consensus 144 aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd-dW~c~~tl------------~g~~~TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD-DWECVQTL------------DGHENTVWSLAFDNIGSR 209 (312)
T ss_pred eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC-CeeEEEEe------------cCccceEEEEEecCCCce
Confidence 3678899999999999997 899999999999999876322 22223444 445579999999999999
Q ss_pred EEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|+++++ ++++||-+.+.-. ..|...+ +.+.|. ...|++++.|+.|++|....+- .
T Consensus 210 l~s~sdD~tv~Iw~~~~~~~-----~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~-d- 265 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLYTDLS-----GMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSP-D- 265 (312)
T ss_pred EEEecCCcceEeeeeccCcc-----hhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCC-C-
Confidence 999975 9999998663111 1122222 278887 5689999999999999865320 0
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCC-CcEEEEEec-CceEEEe
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPT-ENSIACAAA-NSLYMYY 508 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~la~~~~-~~i~v~~ 508 (509)
+|...+... ....|...|++++|+|. .++|+++++ +.+++|.
T Consensus 266 -------~p~~~l~~~----------------------------~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 266 -------EPSWNLLAK----------------------------KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred -------CchHHHHHh----------------------------hhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 010100000 01135678999999995 577887777 7888875
No 30
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-34 Score=261.28 Aligned_cols=402 Identities=14% Similarity=0.169 Sum_probs=280.8
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+-+|..+|+++.|+..|..||+|+.|+.|.|||+-.... ...+.||.
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-----------------------l~rL~GHk--------- 149 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-----------------------LFRLRGHK--------- 149 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEecccee-----------------------eEEeecch---------
Confidence 3456999999999999999999999999999999987666 67889998
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcc-cCC-CCcccCCCCccC-----------
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKA-VGN-GNVASSSNNVSP----------- 181 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~----------- 181 (509)
+.|+.+.| ..+.+.+++.+.|+.|++||+++..+..+.-.+...+.. .-. ...++...+...
T Consensus 150 ---d~iT~~~F--~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~ 224 (888)
T KOG0306|consen 150 ---DSITQALF--LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDE 224 (888)
T ss_pred ---HHHhHHhc--cCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccc
Confidence 88999999 777789999999999999999987654432222221100 000 000000000000
Q ss_pred -------------------------CccccCCCCC---------------------------------------------
Q 043890 182 -------------------------KPYLANGGSP--------------------------------------------- 191 (509)
Q Consensus 182 -------------------------~~~~~~g~~~--------------------------------------------- 191 (509)
++..++++++
T Consensus 225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~ 304 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE 304 (888)
T ss_pred ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence 0011111100
Q ss_pred --------------------cceecCCCCCC--------Cccccccccccccc-e-eeeeeeeeecccccCeEEEEECCC
Q 043890 192 --------------------SKEFSFPPGGI--------PSLRLPTVTSNETS-L-VARCRRVYAHAHDYHINSISNNSD 241 (509)
Q Consensus 192 --------------------~~~~~~~~~~~--------~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~v~~i~~~~~ 241 (509)
..++..+++.. ..+.++.+...... + ..+....-..+|...|++++++.+
T Consensus 305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d 384 (888)
T KOG0306|consen 305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD 384 (888)
T ss_pred hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence 11111111111 11222222210000 0 001111224789999999999999
Q ss_pred CCEEEEEcCCeEEEEEccCCCceeeEe----------------------------ecc----CCccCCCccceEEEEEeC
Q 043890 242 GETFISADDLRINLWNLEISNQSFNIV----------------------------DVK----PANMEDLTEVITSAEFHP 289 (509)
Q Consensus 242 ~~~l~~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~----~~~~~~~~~~i~~l~~~~ 289 (509)
...+++|..+.+++|+..+.+++.++. ++. .....+|.+.|.+++.+|
T Consensus 385 ~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p 464 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP 464 (888)
T ss_pred ceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC
Confidence 888888888899999988776554331 000 124468999999999999
Q ss_pred CCCcEEEEEEcCCeEEEEECCCCcc---------cCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CC
Q 043890 290 THCNMLAYSSSKGSIRLIDLRQSAL---------CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YM 359 (509)
Q Consensus 290 ~~~~~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~ 359 (509)
|+ ..+++|+.|.+|++||..-... .....++++. ...|.++.+||||++|+.+- |+
T Consensus 465 D~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-------------~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 465 DN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-------------EDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred CC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-------------cccEEEEEEcCCCcEEEEEeccC
Confidence 98 9999999999999999763211 0011122222 25899999999999999984 79
Q ss_pred eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCC
Q 043890 360 TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKN 439 (509)
Q Consensus 360 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 439 (509)
+|+||-+.+ -+....+.+|.-++. ++..|||++.++||+.|.+|+||-++-|.+-+ .+.+|..
T Consensus 531 TVkVyflDt-lKFflsLYGHkLPV~---------------smDIS~DSklivTgSADKnVKiWGLdFGDCHK-S~fAHdD 593 (888)
T KOG0306|consen 531 TVKVYFLDT-LKFFLSLYGHKLPVL---------------SMDISPDSKLIVTGSADKNVKIWGLDFGDCHK-SFFAHDD 593 (888)
T ss_pred eEEEEEecc-eeeeeeeccccccee---------------EEeccCCcCeEEeccCCCceEEeccccchhhh-hhhcccC
Confidence 999999997 688888999987755 99999999999999999999999999999998 9999999
Q ss_pred ceeEEEEcCCCCCCc---ccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 440 PMRRQVQTPSRPSRS---LSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 440 ~v~~~~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.|.++.|-|..-... -.+..+.|+-.+......+.|+ ...|++++.+|+|.++++++. .+|++|.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H----~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH----HSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc----hheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 999999999543321 1234555554444444455554 789999999999999999998 7999995
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.9e-33 Score=255.21 Aligned_cols=281 Identities=24% Similarity=0.433 Sum_probs=230.2
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.++|++++|+|++++|++++.||.|++|++.+.+. ...+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC-----------
Confidence 46999999999999999999999999999999987765 56667776
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..+..+.| .+++++|++++.||.|++|++.+++....
T Consensus 52 -~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---------------------------------------- 88 (289)
T cd00200 52 -GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRT---------------------------------------- 88 (289)
T ss_pred -cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEE----------------------------------------
Confidence 67889999 88999999999999999999986532111
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+..|...+.++.|++++++++++ .++.|++||+++.+... .+
T Consensus 89 -----------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~ 131 (289)
T cd00200 89 -----------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT--------TL 131 (289)
T ss_pred -----------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE--------Ee
Confidence 25667789999999999899988 69999999998655433 34
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
..|...|.++.|+|++ .++++++.++.|++||++.++. ...+.. |...+.++.|+|+++.+++
T Consensus 132 ~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~~------------~~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 132 RGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKC----VATLTG------------HTGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred ccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEcccccc----ceeEec------------CccccceEEECCCcCEEEE
Confidence 5688899999999997 8888888899999999987653 233332 3368999999999988888
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
++ ++.|++||++. .+.+..+..|...+. +++|+|++.++++++.||.|++|++.+++... .+
T Consensus 195 ~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~---------------~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~ 257 (289)
T cd00200 195 SSSDGTIKLWDLST-GKCLGTLRGHENGVN---------------SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ-TL 257 (289)
T ss_pred ecCCCcEEEEECCC-CceecchhhcCCceE---------------EEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE-Ec
Confidence 75 69999999986 566666655654433 89999999999988889999999999877766 55
Q ss_pred ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 435 EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
..|. ..|.+++|+|++++|++++. +.+++|+
T Consensus 258 ~~~~-------------------------------------------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 SGHT-------------------------------------------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cccC-------------------------------------------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4443 56899999999999998887 7899885
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-32 Score=240.72 Aligned_cols=309 Identities=14% Similarity=0.218 Sum_probs=220.8
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|...++...|+|.|-|+|+|...|+|||||....+. .+..+++.-.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---------------------iLKnef~v~a----------- 103 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---------------------ILKNEFQVLA----------- 103 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---------------------eeeeeeeecc-----------
Confidence 46999999999999999999999999999999876443 1123344333
Q ss_pred hccceeeEEEEcCCCceEEEeeC--C--CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 117 EEKINKIRWCQTANGALFLLSTN--D--KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~--d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
++|..|+| +.++++|+..+. + |.+.+||- +... |++..+........|-|+.-
T Consensus 104 -G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DS--G~Sv---------------Gei~GhSr~ins~~~KpsRP--- 160 (603)
T KOG0318|consen 104 -GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDS--GNSV---------------GEITGHSRRINSVDFKPSRP--- 160 (603)
T ss_pred -ccccccee--CCCCcEEEEEecCccceeEEEEecC--CCcc---------------ceeeccceeEeeeeccCCCc---
Confidence 78999999 999999988765 3 34555554 3221 11111111112222222211
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
-.+++++.+..+.+++-..... ... +..|..-|+|+.|+|||.+|++. .||.+.+||-.+++....+-
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKF------k~s-~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~--- 229 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKF------KSS-FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE--- 229 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeee------eec-ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec---
Confidence 1334566677777765332221 112 36788899999999999999999 99999999999998776542
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.-.+|++.|.+++|+||+ ..|++++.|.+++|||+.+.++ ++++...... ......+.|. ++.
T Consensus 230 --~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~sl----v~t~~~~~~v---------~dqqvG~lWq-kd~ 292 (603)
T KOG0318|consen 230 --DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSL----VSTWPMGSTV---------EDQQVGCLWQ-KDH 292 (603)
T ss_pred --CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccce----EEEeecCCch---------hceEEEEEEe-CCe
Confidence 355899999999999998 9999999999999999999876 4555543310 1234455565 344
Q ss_pred EEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 352 HILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 352 ~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
++...-.|.|.+++... ..++..+.+|...++ ++..+||+++|++|+.||.|.-|+..+|..-.
T Consensus 293 lItVSl~G~in~ln~~d-~~~~~~i~GHnK~IT---------------aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSD-PSVLKVISGHNKSIT---------------ALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred EEEEEcCcEEEEecccC-CChhheeccccccee---------------EEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 44444469999999997 569999999987765 99999999999999999999999998876543
Q ss_pred eeeccCCCceeEE
Q 043890 432 TTLEASKNPMRRQ 444 (509)
Q Consensus 432 ~~~~~~~~~v~~~ 444 (509)
..-++|...|..+
T Consensus 357 ~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 357 LAGKGHTNQIKGM 369 (603)
T ss_pred cccccccceEEEE
Confidence 1225555544443
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-33 Score=245.02 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=212.3
Q ss_pred ecccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.|..+|.+.+|+|-.. +||+|+.|-..++|++............+ .++ ..+.+ ++...
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l--------rh~-----~~~~~--------~s~~~ 234 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL--------RHC-----IREGG--------KSVPS 234 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh--------hhh-----hhhhc--------ccCCc
Confidence 4999999999999866 99999999999999997521100000000 000 00011 11222
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
...|++++| +.+|..||+|+.||.+++|+........
T Consensus 235 nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t----------------------------------------- 271 (524)
T KOG0273|consen 235 NKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST----------------------------------------- 271 (524)
T ss_pred cCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh-----------------------------------------
Confidence 367999999 9999999999999999999987654221
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+..|.++|.++.|+.+|++++++ .|+++.+||..++.... .+
T Consensus 272 -----------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q--------~f 314 (524)
T KOG0273|consen 272 -----------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ--------QF 314 (524)
T ss_pred -----------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE--------ee
Confidence 37799999999999999999999 89999999998766432 45
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.-|..+-..+.|-.+ .-|++++.|+.|+|+-+..... +.++.+ |.+.|.++.|.|.|.+|++
T Consensus 315 ~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P----~~t~~G------------H~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRP----VKTFIG------------HHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCc----ceeeec------------ccCceEEEEECCCCceEEE
Confidence 557777678899877 5899999999999999886652 455554 4589999999999999999
Q ss_pred ecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC---------CEEEEeeCCCcEEEEeCC
Q 043890 356 RDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG---------LRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 356 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iw~~~ 425 (509)
++| ++++||.... ......+..|...+. .+.|+|+| ..|++++.|++|++||+.
T Consensus 377 ~SdD~TlkiWs~~~-~~~~~~l~~Hskei~---------------t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQ-SNSVHDLQAHSKEIY---------------TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred ecCCCeeEeeecCC-Ccchhhhhhhcccee---------------eEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 975 9999999885 678888888886644 78888865 469999999999999999
Q ss_pred CCceeeeeeccCCCceeEEEEcC
Q 043890 426 PGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
.+.++. +|..|..||++++|||
T Consensus 441 ~gv~i~-~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 441 SGVPIH-TLMKHQEPVYSVAFSP 462 (524)
T ss_pred CCceeE-eeccCCCceEEEEecC
Confidence 999998 8877774444433333
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.3e-34 Score=263.07 Aligned_cols=267 Identities=18% Similarity=0.301 Sum_probs=212.4
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..++|..| ++|+.+||.|-.|..|++|.+...+.+.......-. ++ +
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~-------~~--------------d---------- 425 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLS-------NI--------------D---------- 425 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhc-------cc--------------c----------
Confidence 56899999 999999999999999999999876544332110000 00 0
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
....+-.+...|.... ...+. +.+|.++|..+.|+|+.++|+++ +|+++++|.+++..... ...
T Consensus 426 ~~sad~~~~~~D~~~~------~~~~~-L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------~y~ 490 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSS------GTSRT-LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------IYK 490 (707)
T ss_pred ccccchhhhhccccCC------ceeEE-eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--------Eec
Confidence 0000000111111111 11122 48999999999999999999999 99999999999877654 467
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|..+|..+.|+|.| .+||+++.|++-++|...... +.+.|.+| .+.|.|+.|+|+..|+++|
T Consensus 491 GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~----PlRifagh------------lsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 491 GHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK----PLRIFAGH------------LSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred CCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC----chhhhccc------------ccccceEEECCcccccccC
Confidence 999999999999998 999999999999999988754 24555544 4889999999999999998
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
+ |.+|++||+.+ +..++.|.+|.+.+. +++|||+|++|++|++||.|.+||+.+++.+. .+.
T Consensus 554 SsD~tVRlWDv~~-G~~VRiF~GH~~~V~---------------al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~-~l~ 616 (707)
T KOG0263|consen 554 SSDRTVRLWDVST-GNSVRIFTGHKGPVT---------------ALAFSPCGRYLASGDEDGLIKIWDLANGSLVK-QLK 616 (707)
T ss_pred CCCceEEEEEcCC-CcEEEEecCCCCceE---------------EEEEcCCCceEeecccCCcEEEEEcCCCcchh-hhh
Confidence 6 69999999997 788999999998866 99999999999999999999999999999988 777
Q ss_pred cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 436 ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
+|+ ..|.++.|+.+|..||+|+. +++++|+.
T Consensus 617 ~Ht-------------------------------------------~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 617 GHT-------------------------------------------GTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ccc-------------------------------------------CceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 775 55788888889999998888 88999974
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-34 Score=228.74 Aligned_cols=279 Identities=13% Similarity=0.211 Sum_probs=240.5
Q ss_pred eecccceEEEEECC---CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDK---TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~---~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+|+.+|..++||| +|-+|++++.||.-.+-+-+++.- +.+|.||.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------------igtfeghk-------- 59 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------------IGTFEGHK-------- 59 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------------EEeeeccC--------
Confidence 46999999999996 789999999999998888888887 89999999
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|.+... +.+..+-++++.|-+-++||..+|..+..
T Consensus 60 ----gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs------------------------------------- 96 (334)
T KOG0278|consen 60 ----GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS------------------------------------- 96 (334)
T ss_pred ----cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh-------------------------------------
Confidence 88999988 77887889999999999999998876554
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..|..-|..++|+.|.++|++| .+..+++||++..+. +|
T Consensus 97 ---------------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-------pp 136 (334)
T KOG0278|consen 97 ---------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-------PP 136 (334)
T ss_pred ---------------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-------Cc
Confidence 4466679999999999999999 899999999997764 34
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
..+.+|...|..+.|.... +.+++++.|++||+||.+++.. ++.+... .+|+++.++++|++
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~----v~sL~~~-------------s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE----VQSLEFN-------------SPVTSLEVSQDGRI 198 (334)
T ss_pred hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE----EEEEecC-------------CCCcceeeccCCCE
Confidence 5889999999999999987 8999999999999999999985 5566544 58999999999999
Q ss_pred EEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 353 ILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 353 l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
|..+..+.|.+||..+ ..+++.++.... |.+..++|+...+++|++|..++.||..+|+.+.
T Consensus 199 lTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~- 260 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG- 260 (334)
T ss_pred EEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEEeccCCceee-
Confidence 9998779999999997 677777765433 2278999999999999999999999999999887
Q ss_pred ee-ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 433 TL-EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 433 ~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.+ ++|. .+|.|+.|+|+|...|+|+. ++|+||-
T Consensus 261 ~~nkgh~-------------------------------------------gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 261 SYNKGHF-------------------------------------------GPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecccCCC-------------------------------------------CceEEEEECCCCceeeccCCCceEEEEE
Confidence 32 4443 67888899999999999998 8899985
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-31 Score=275.03 Aligned_cols=304 Identities=22% Similarity=0.346 Sum_probs=222.5
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
+.+..|.+.|.+++|+|+|++||+|+.|+.|+||+............ .| ...+.++
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~-----------~~----~~~~~~~--------- 532 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIH-----------YP----VVELASR--------- 532 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccc-----------cc----eEEeccc---------
Confidence 34556999999999999999999999999999999864321000000 00 1122222
Q ss_pred hhhhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 114 LEIEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++| ++ ++.+|++++.||+|++||+.+++...
T Consensus 533 ----~~v~~l~~--~~~~~~~las~~~Dg~v~lWd~~~~~~~~------------------------------------- 569 (793)
T PLN00181 533 ----SKLSGICW--NSYIKSQVASSNFEGVVQVWDVARSQLVT------------------------------------- 569 (793)
T ss_pred ----CceeeEEe--ccCCCCEEEEEeCCCeEEEEECCCCeEEE-------------------------------------
Confidence 56899999 54 57799999999999999998654221
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
. +.+|...|++++|+| ++.+|++| .|+.|++||++++.....
T Consensus 570 -------------------------------~-~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~---- 613 (793)
T PLN00181 570 -------------------------------E-MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT---- 613 (793)
T ss_pred -------------------------------E-ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE----
Confidence 1 367899999999997 78899999 899999999997664432
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
+. +...+.++.|++..+.+|++|+.|+.|++||++..+.. ...+ .+|...|.++.|. ++
T Consensus 614 ----~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~~~~------------~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 614 ----IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---LCTM------------IGHSKTVSYVRFV-DS 672 (793)
T ss_pred ----Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---ceEe------------cCCCCCEEEEEEe-CC
Confidence 22 23578999996543399999999999999999876421 2222 3455789999997 67
Q ss_pred CEEEEec-CCeEEEEECCCC-----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 351 RHILSRD-YMTLKLWDINMD-----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
.+|++++ |+.|+|||++.. ..++..+.+|...+. .++|+|++++|++|+.|+.|++|+.
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~---------------~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN---------------FVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee---------------EEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 7888875 699999999742 246677777766543 7899999999999999999999998
Q ss_pred CCCceeeeeecc-CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-C
Q 043890 425 APGSTEATTLEA-SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-N 502 (509)
Q Consensus 425 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~ 502 (509)
.....+. .+.. +..++..+ .. ..+...|.+++|+|++..|++|+. +
T Consensus 738 ~~~~~~~-s~~~~~~~~~~~~---------------------------~~----~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 738 AFPMPVL-SYKFKTIDPVSGL---------------------------EV----DDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCceE-EEecccCCccccc---------------------------cc----CCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 7655443 2211 11111100 00 012467999999999999998888 8
Q ss_pred ceEEEe
Q 043890 503 SLYMYY 508 (509)
Q Consensus 503 ~i~v~~ 508 (509)
.|+||+
T Consensus 786 ~I~i~~ 791 (793)
T PLN00181 786 NIKILE 791 (793)
T ss_pred cEEEEe
Confidence 999996
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-33 Score=260.27 Aligned_cols=295 Identities=17% Similarity=0.236 Sum_probs=242.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
.+.+|..++|+|....++++-..|.|++||...+.. +..|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------------i~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------------IDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------------HhhhhccC------------C
Confidence 357789999999999999999999999999998877 67778887 9
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
+|.++.| +|++.+|++|+.|..|+||+..+.++...
T Consensus 53 pVRgv~F--H~~qplFVSGGDDykIkVWnYk~rrclft------------------------------------------ 88 (1202)
T KOG0292|consen 53 PVRGVDF--HPTQPLFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------ 88 (1202)
T ss_pred ccceeee--cCCCCeEEecCCccEEEEEecccceehhh------------------------------------------
Confidence 9999999 99999999999999999999998876544
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+.+|-+-|+.+.|++.-.+++++ +|.+|+||+..+.+++. .+.+
T Consensus 89 ---------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia--------vltG 133 (1202)
T KOG0292|consen 89 ---------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA--------VLTG 133 (1202)
T ss_pred ---------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE--------EEec
Confidence 47899999999999999999999 99999999999877654 5789
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeec-------------cccCCCCccccccccccEEEE
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFE-------------EQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~ 344 (509)
|...|.|..|+|.. .+++++|-|.+|||||+..-+.-......++ +....--+..+.+|..+|+.+
T Consensus 134 HnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred CceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 99999999999987 8999999999999999976432111011111 111111233578899999999
Q ss_pred EEecCCCEEEEecC-CeEEEEECCCCCC--ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEE
Q 043890 345 KFAKDGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 421 (509)
Q Consensus 345 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 421 (509)
+|+|.-.++++|+| +.|++|.+.. .+ .+.+..+|.+.+. ++-|+|...++++.++|+.|+|
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nnVs---------------svlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNNVS---------------SVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEecc-ccceeehhhhcccCCcc---------------eEEecCccceeEecCCCccEEE
Confidence 99999999999875 9999999875 33 3556778877765 8999999999999999999999
Q ss_pred EeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 422 FGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 422 w~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
||+...+.+. ++.-. .++-+.++-||..+++|.|-+
T Consensus 277 wDm~kRt~v~-tfrre-------------------------------------------ndRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 277 WDMTKRTSVQ-TFRRE-------------------------------------------NDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred Eeccccccee-eeecc-------------------------------------------CCeEEEEEecCCcceeeeecC
Confidence 9999888776 54432 255677888888888888877
Q ss_pred CceEEEe
Q 043890 502 NSLYMYY 508 (509)
Q Consensus 502 ~~i~v~~ 508 (509)
+++.||-
T Consensus 313 sGm~VFk 319 (1202)
T KOG0292|consen 313 SGMIVFK 319 (1202)
T ss_pred CceEEEE
Confidence 7777763
No 38
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=243.27 Aligned_cols=310 Identities=19% Similarity=0.340 Sum_probs=228.5
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|+..|+++++.|.|-.|++|+.|-.|++||+.......+ ..+.+.-...|
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------~fr~l~P~E~h------------ 215 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------SFRQLQPCETH------------ 215 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccch----------------hhhccCccccc------------
Confidence 45889999999999999999999999999999987654111 11112223344
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
.|++++| ++.|..|++.+.....+++|-..........
T Consensus 216 --~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K-------------------------------------- 253 (641)
T KOG0772|consen 216 --QINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSK-------------------------------------- 253 (641)
T ss_pred --ccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeec--------------------------------------
Confidence 4999999 9999999999999999999987654332211
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
|. -.+-|+.+ ..+|...++|.+|+|.. +.|+++ .||++++||+...+....++.. ..
T Consensus 254 ---GD---QYI~Dm~n-------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~--k~ 312 (641)
T KOG0772|consen 254 ---GD---QYIRDMYN-------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT--KP 312 (641)
T ss_pred ---cc---hhhhhhhc-------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee--cc
Confidence 11 11111211 38899999999999974 456677 9999999999987655555433 34
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc--cEEEEEEecCCCE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA--SISDIKFAKDGRH 352 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~ 352 (509)
..+..-++++++|++++ ++||+|..||.|.+||.+.... .+...+. .+|.. .|+++.||+||++
T Consensus 313 ~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v--~p~~~vk-----------~AH~~g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV--RPVMKVK-----------DAHLPGQDITSISFSYDGNY 378 (641)
T ss_pred CCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc--ccceEee-----------eccCCCCceeEEEeccccch
Confidence 44567789999999999 8999999999999999865432 1122221 22333 8999999999999
Q ss_pred EEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC------CCcEEEEeCC
Q 043890 353 ILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY------SNLFRVFGCA 425 (509)
Q Consensus 353 l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~ 425 (509)
|++- .|+++++||++...+++....+-.... +-+.++|||+.++|++|+. .|.+.+||..
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 9995 579999999998878877665533221 1128999999999999864 4679999988
Q ss_pred CCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-Cce
Q 043890 426 PGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSL 504 (509)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i 504 (509)
+-+.+. .+... +..|..+.|||.-+.+.+++. +++
T Consensus 446 t~d~v~-ki~i~-------------------------------------------~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 446 TLDTVY-KIDIS-------------------------------------------TASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred ceeeEE-EecCC-------------------------------------------CceEEEEeecchhhheeeecCCCce
Confidence 766665 22211 356889999999877776666 899
Q ss_pred EEEe
Q 043890 505 YMYY 508 (509)
Q Consensus 505 ~v~~ 508 (509)
+|||
T Consensus 482 ~vyY 485 (641)
T KOG0772|consen 482 HVYY 485 (641)
T ss_pred EEEE
Confidence 9987
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=241.08 Aligned_cols=249 Identities=18% Similarity=0.330 Sum_probs=205.2
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+..|.++|+++.|+++|.++++|+.+|.|++|+..-... +.+++|..
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV------------------------k~~~ahh~--------- 180 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV------------------------KIIQAHHA--------- 180 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh------------------------HHhhHhhh---------
Confidence 345999999999999999999999999999999875543 45555542
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|++++| +|+...|++++.||+|+|||....+...+
T Consensus 181 --eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~v--------------------------------------- 217 (464)
T KOG0284|consen 181 --EAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERV--------------------------------------- 217 (464)
T ss_pred --hhhheecc--CCCCceeEEecCCCeEEEEeccCCchhhe---------------------------------------
Confidence 67999999 88999999999999999999876653322
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|.-.|++++|+|...+++++ .|..|++||.+++.++. +
T Consensus 218 ------------------------------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~--------t 259 (464)
T KOG0284|consen 218 ------------------------------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA--------T 259 (464)
T ss_pred ------------------------------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh--------h
Confidence 37899999999999999999999 89999999999998764 6
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 353 (509)
+..|+..|..+.|+|++ ++|++++.|..++++|+++.+. +..+. +|...++++.|+|-.. +|
T Consensus 260 lh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~~r------------~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 260 LHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFTYR------------GHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred hhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHHhh------------cchhhheeeccccccccce
Confidence 78899999999999999 9999999999999999996543 34444 4558899999999555 55
Q ss_pred EEe-cCCeEEEEECCCCCCceEEE-eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC-CCcee
Q 043890 354 LSR-DYMTLKLWDINMDSGPVATF-QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA-PGSTE 430 (509)
Q Consensus 354 ~s~-~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~ 430 (509)
++| .||.|..|.+.. .+++..+ .+|...+. +++|+|-|.+|++|+.|.++++|.-. .+...
T Consensus 323 tsgg~Dgsvvh~~v~~-~~p~~~i~~AHd~~iw---------------sl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~ 386 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGL-EEPLGEIPPAHDGEIW---------------SLAYHPLGHILATGSNDRTVRFWTRNRPGDKN 386 (464)
T ss_pred eeccCCCceEEEeccc-cccccCCCccccccee---------------eeeccccceeEeecCCCcceeeeccCCCCCcc
Confidence 554 579999999985 4444433 34665544 99999999999999999999999754 44444
Q ss_pred e
Q 043890 431 A 431 (509)
Q Consensus 431 ~ 431 (509)
.
T Consensus 387 ~ 387 (464)
T KOG0284|consen 387 A 387 (464)
T ss_pred c
Confidence 3
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=233.39 Aligned_cols=246 Identities=20% Similarity=0.312 Sum_probs=213.4
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCC-CCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDT-KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
...+.+|++.|.+++|+..|++||+++.|-.+++||.+.. ++ ...+.+|+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c-----------------------~ks~~gh~------ 193 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC-----------------------IKSLIGHE------ 193 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH-----------------------HHHhcCcc------
Confidence 4456789999999999999999999999988999999863 33 45667777
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..|.++.| -|.|.+|++++.|.+|+.|++.++.++..
T Consensus 194 ------h~vS~V~f--~P~gd~ilS~srD~tik~We~~tg~cv~t----------------------------------- 230 (406)
T KOG0295|consen 194 ------HGVSSVFF--LPLGDHILSCSRDNTIKAWECDTGYCVKT----------------------------------- 230 (406)
T ss_pred ------cceeeEEE--EecCCeeeecccccceeEEecccceeEEe-----------------------------------
Confidence 77999999 77889999999999999999998865433
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+.+|...|+.+..+.||.+++++ .|.+|++|-+.+.+..
T Consensus 231 ----------------------------------~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k------ 270 (406)
T KOG0295|consen 231 ----------------------------------FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK------ 270 (406)
T ss_pred ----------------------------------ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh------
Confidence 37888899999999999999999 8999999999987543
Q ss_pred cCCccCCCccceEEEEEeCCC--------------CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 271 KPANMEDLTEVITSAEFHPTH--------------CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~--------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
..+..|..+|-+++|.|.. ..++.+++.|++|++||+.++.. +.++.+
T Consensus 271 --~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~g------------ 332 (406)
T KOG0295|consen 271 --AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVG------------ 332 (406)
T ss_pred --hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEec------------
Confidence 3678899999999998742 25899999999999999999974 455544
Q ss_pred ccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 337 IIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
|...|..++|+|.|+||+++. |+++++||+++ .+++..+..|+..++ +++|+.+..++++|+-
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfvt---------------~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFVT---------------SLDFHKTAPYVVTGSV 396 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCcceeE---------------EEecCCCCceEEeccc
Confidence 458999999999999999975 59999999997 899999999998876 8999999999999999
Q ss_pred CCcEEEEeC
Q 043890 416 SNLFRVFGC 424 (509)
Q Consensus 416 dg~i~iw~~ 424 (509)
|..+++|..
T Consensus 397 dqt~KvwEc 405 (406)
T KOG0295|consen 397 DQTVKVWEC 405 (406)
T ss_pred cceeeeeec
Confidence 999999974
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=253.13 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=201.9
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCC-------C------------------C-cc----ccccccc-
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDH-------G------------------G-SR----RDLERMD- 86 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~-------~------------------~-~~----~~~~~~~- 86 (509)
.|.+.|.++.||+||+|||+|+.|+.|+||.+...+.. . . .+ ...+...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 69999999999999999999999999999998761110 0 0 00 0000000
Q ss_pred -cccccC-----CcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccC
Q 043890 87 -YSTSRH-----PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMN 160 (509)
Q Consensus 87 -~~~~~~-----~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 160 (509)
.++... -.......|.||. +.|..|.| +.++ +|++++.|++|++|++....++++
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn~-fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKNN-FLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccc--ccCC-eeEeccccccEEeecCCCcceeeE----
Confidence 000111 1223466788888 77999999 7555 999999999999999987665443
Q ss_pred CCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC
Q 043890 161 VDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS 240 (509)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 240 (509)
..|.+-|+|++|+|
T Consensus 406 ------------------------------------------------------------------F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 406 ------------------------------------------------------------------FSHNDFVTCVAFNP 419 (712)
T ss_pred ------------------------------------------------------------------EecCCeeEEEEecc
Confidence 46889999999999
Q ss_pred -CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCc
Q 043890 241 -DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSH 318 (509)
Q Consensus 241 -~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 318 (509)
|.++|++| -||.|+||++...+.. .......-|++++|.|+| +..++|+.+|.+++|+....++.
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv---------~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~--- 486 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVV---------DWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLV--- 486 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeE---------eehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEE---
Confidence 67899999 8999999999865432 223345889999999998 99999999999999999987742
Q ss_pred eeeeccccCCCCccccccccccEEEEEEecCC--CEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCcc
Q 043890 319 AILFEEQEAPGSRSFFTEIIASISDIKFAKDG--RHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIF 396 (509)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
..+......+. -..| ..|+.+.|.|.. +.|++..|..|+|||.+. ..++..+++.......+
T Consensus 487 -~~~~I~~~~~K---k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~---------- 550 (712)
T KOG0283|consen 487 -SDFHIRLHNKK---KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQI---------- 550 (712)
T ss_pred -EeeeEeeccCc---cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcce----------
Confidence 22221111111 1112 279999999844 378888889999999985 78888888765443211
Q ss_pred ceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 397 DKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 397 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
...|+.||++|+++++|..|+||+..
T Consensus 551 ---~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 551 ---SASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ---eeeEccCCCEEEEeecCceEEEEeCC
Confidence 78999999999999999999999984
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.3e-33 Score=231.78 Aligned_cols=235 Identities=13% Similarity=0.301 Sum_probs=199.1
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
..+.|+|+.+. ...+++|..|++|+|||..+..+ ...+.||+ +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c-----------------------~~~L~GHt------------G 238 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC-----------------------LKILTGHT------------G 238 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH-----------------------HHhhhcCC------------C
Confidence 46889999976 45699999999999999998887 78889999 8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.++.| +.+.|++|+.|.+|+|||++++++..+
T Consensus 239 SVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t------------------------------------------ 272 (499)
T KOG0281|consen 239 SVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT------------------------------------------ 272 (499)
T ss_pred cEEeeec----cceEEEecCCCceEEEEeccCCchhhH------------------------------------------
Confidence 8999999 777999999999999999999987765
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+.+|...|..+.|+. .+++++ .|..+.+||+....... + ...+.+
T Consensus 273 ---------------------------lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it-~----rrVLvG 318 (499)
T KOG0281|consen 273 ---------------------------LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDIT-L----RRVLVG 318 (499)
T ss_pred ---------------------------HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHH-H----HHHHhh
Confidence 367888899999863 688888 99999999998765221 1 025789
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
|...|+.+.|+. +++++++.|.+|++|++.+... ++++.+ |..+|.|+.+ .|+++++|+
T Consensus 319 HrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef----vRtl~g------------HkRGIAClQY--r~rlvVSGS 377 (499)
T KOG0281|consen 319 HRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF----VRTLNG------------HKRGIACLQY--RDRLVVSGS 377 (499)
T ss_pred hhhheeeecccc---ceEEEecCCceEEEEeccceee----ehhhhc------------ccccceehhc--cCeEEEecC
Confidence 999999999963 6999999999999999999874 455554 4478888877 589999985
Q ss_pred -CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 358 -YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 358 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
|.+|++||+.. +.+++.+.+|+..+. ++.| |.+.+++|+.||+|++||+..+..
T Consensus 378 SDntIRlwdi~~-G~cLRvLeGHEeLvR---------------ciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 378 SDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred CCceEEEEeccc-cHHHHHHhchHHhhh---------------heee--cCceeeeccccceEEEEecccccC
Confidence 69999999997 899999999998866 7788 678899999999999999987643
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-32 Score=226.51 Aligned_cols=293 Identities=16% Similarity=0.279 Sum_probs=234.0
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+....+-|..|||||+||++|+.||.|.+||..+++. .+. ..+++.. . -+-++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl----rKD-----------------LkYQAqd-~-----fMMmd 263 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL----RKD-----------------LKYQAQD-N-----FMMMD 263 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchh----hhh-----------------hhhhhhc-c-----eeecc
Confidence 4567788999999999999999999999999998876 110 0111111 0 01233
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++.| +.|.+.+++|+.||.|+||.+.+|.+...+
T Consensus 264 ~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRrF---------------------------------------- 301 (508)
T KOG0275|consen 264 DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRRF---------------------------------------- 301 (508)
T ss_pred cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHHh----------------------------------------
Confidence 78999999 999999999999999999999999876542
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
-.+|...|+|+.|+.|+..++++ .|.++++.-+.+++.+ ..+.
T Consensus 302 ----------------------------drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L--------KEfr 345 (508)
T KOG0275|consen 302 ----------------------------DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL--------KEFR 345 (508)
T ss_pred ----------------------------hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH--------HHhc
Confidence 26899999999999999999988 8999999999998865 3789
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILS 355 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s 355 (509)
+|+..|+...|.++| ..+++++.||+|++|+.++... +.+|..... ..+|+++-.-|. -..++.
T Consensus 346 GHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~~----------d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLGT----------DYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred CccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCCC----------cccceeEEEcCCCCceEEE
Confidence 999999999999999 9999999999999999998873 344443221 147888887774 456677
Q ss_pred ecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 RDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
+.. ++|+|.++. ++.++.+......-. .. .+++.||.|.++++.++|+.++-|.+.+|++.. ++
T Consensus 411 CNrsntv~imn~q--GQvVrsfsSGkREgG---------dF---i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-tl 475 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQ--GQVVRSFSSGKREGG---------DF---INAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-TL 475 (508)
T ss_pred EcCCCeEEEEecc--ceEEeeeccCCccCC---------ce---EEEEecCCCcEEEEEccCcEEEEEEeecCceee-ee
Confidence 754 999999987 577777765332211 11 178899999999999999999999999999887 77
Q ss_pred ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 435 EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
..|. +.+..++-||-.++||+-+. +-+.+|.
T Consensus 476 ~VhE-------------------------------------------kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 476 PVHE-------------------------------------------KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccc-------------------------------------------ccccccccCcccchhhhhcccchhhhcC
Confidence 7765 55778888999999998887 6677774
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3e-31 Score=213.96 Aligned_cols=277 Identities=17% Similarity=0.292 Sum_probs=220.0
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+..+|...|.+|+|+.+|..||+|+.|+++++|+++..+. .....+.+|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------~~~~~~~gh~-------- 64 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------RKELVYRGHT-------- 64 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------hhhhcccCCC--------
Confidence 44566999999999999999999999999999999987754 0124556777
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|..++|. .+...+|++++.|.+|++||++.+++.....
T Consensus 65 ----~svdql~w~-~~~~d~~atas~dk~ir~wd~r~~k~~~~i~----------------------------------- 104 (313)
T KOG1407|consen 65 ----DSVDQLCWD-PKHPDLFATASGDKTIRIWDIRSGKCTARIE----------------------------------- 104 (313)
T ss_pred ----cchhhheeC-CCCCcceEEecCCceEEEEEeccCcEEEEee-----------------------------------
Confidence 779999994 2355689999999999999999887543311
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
....=..+.|+|+|++++.+ .|..|...|.++.+..
T Consensus 105 -----------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~-------- 141 (313)
T KOG1407|consen 105 -----------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV-------- 141 (313)
T ss_pred -----------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEeccccee--------
Confidence 11223357899999999999 8999999999976533
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
........+..+.|+.++ .+|+.....|+|.|.....-+ ++. .+.+|...+.++.|+|+|++
T Consensus 142 -~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk----pv~------------si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 142 -NEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK----PVQ------------SIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred -ehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccc----ccc------------ccccCCcceEEEEECCCCce
Confidence 223345667889999776 777777777999988766433 133 34556688999999999999
Q ss_pred EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+|+|+ |..+.+||+.. --+++.+..+..++. .+.||.||++||+|++|..|-|=++++|..+.
T Consensus 204 fA~GsADAlvSLWD~~E-LiC~R~isRldwpVR---------------TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDE-LICERCISRLDWPVR---------------TLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred EeeccccceeeccChhH-hhhheeeccccCceE---------------EEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 99986 69999999995 678888888877655 89999999999999999999999999998775
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
.+ .+..+...++|||...+||.+++
T Consensus 268 -eI--------------------------------------------~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 268 -EI--------------------------------------------PCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred -Ee--------------------------------------------eccCCceeEEecCCCceeeEEec
Confidence 22 22467789999999999998876
No 45
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-33 Score=233.59 Aligned_cols=293 Identities=20% Similarity=0.308 Sum_probs=231.5
Q ss_pred ceeEEeeccccccccCcceecccceEEEEECCCC-CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceE
Q 043890 19 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTG-DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRY 97 (509)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~-~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (509)
+++..|++|| .+.+-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+
T Consensus 49 KleR~fakPF----v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----------------------- 101 (433)
T KOG0268|consen 49 KLERVFAKPF----VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----------------------- 101 (433)
T ss_pred HHHHHhhccc----hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------
Confidence 4666777777 55666799999999999986 8899999999999999998887
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
...+++|. +.|.+|++ .. ..+++++.|++|+.|.++.. ...
T Consensus 102 ~~~f~AH~------------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~-p~~---------------------- 142 (433)
T KOG0268|consen 102 IRTFKAHE------------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGP-PLH---------------------- 142 (433)
T ss_pred hheeeccc------------CceeeEEe--cc--cceEEecCCcceeeeeccCC-cce----------------------
Confidence 78899998 88999999 43 68999999999999998752 111
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWN 257 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd 257 (509)
++ .-...+..|.-+..+..++++.. .|.|||
T Consensus 143 ----------------------------------------------ti--lg~s~~~gIdh~~~~~~FaTcGe-~i~IWD 173 (433)
T KOG0268|consen 143 ----------------------------------------------TI--LGKSVYLGIDHHRKNSVFATCGE-QIDIWD 173 (433)
T ss_pred ----------------------------------------------ee--eccccccccccccccccccccCc-eeeecc
Confidence 01 11233556676677778888721 489999
Q ss_pred ccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccc
Q 043890 258 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEI 337 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (509)
.+...+.. .+......|.++.|+|-...+|++++.|+.|.+||++......+.+..
T Consensus 174 ~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---------------- 229 (433)
T KOG0268|consen 174 EQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---------------- 229 (433)
T ss_pred cccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------------
Confidence 98655432 455567789999999998889999999999999999998754322222
Q ss_pred cccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 338 IASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 338 ~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
..-+.++|+|++-.+++|+ |..++.||++.-..++....+|...+. +++|||.|+-+++|+.|
T Consensus 230 -mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~---------------dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 230 -MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM---------------DVDFSPTGQEFVSGSYD 293 (433)
T ss_pred -ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEE---------------EeccCCCcchhcccccc
Confidence 2457799999776677776 599999999987788888888887754 99999999999999999
Q ss_pred CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEE
Q 043890 417 NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
.+|+||..+.+.-.. ++ |+ +. =+.|.++.||.|.+++
T Consensus 294 ksIRIf~~~~~~SRd-iY--ht-----------------------------------kR-----Mq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRD-IY--HT-----------------------------------KR-----MQHVFCVKYSMDSKYI 330 (433)
T ss_pred ceEEEeecCCCcchh-hh--hH-----------------------------------hh-----hheeeEEEEeccccEE
Confidence 999999998664332 11 10 00 1568999999999999
Q ss_pred EEEec-CceEEEeC
Q 043890 497 ACAAA-NSLYMYYA 509 (509)
Q Consensus 497 a~~~~-~~i~v~~~ 509 (509)
++|++ +++++|.+
T Consensus 331 ~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKA 344 (433)
T ss_pred EecCCCcceeeeec
Confidence 99999 89999964
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=244.49 Aligned_cols=281 Identities=18% Similarity=0.285 Sum_probs=231.8
Q ss_pred cceecccceEEEEEC-CCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDIISAIEFD-KTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s-~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..+|-.+.|.+++|- |+.++||+++..+.+++|++.+..+ ..+.||+
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------------~ii~GH~-------- 365 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------------QIIPGHT-------- 365 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce------------------------EEEeCch--------
Confidence 345678999999984 6789999999999999999988877 5889998
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.++.. ..+|.+|+||+.|.++++|.++++......-
T Consensus 366 ----e~vlSL~~--~~~g~llat~sKD~svilWr~~~~~~~~~~~----------------------------------- 404 (775)
T KOG0319|consen 366 ----EAVLSLDV--WSSGDLLATGSKDKSVILWRLNNNCSKSLCV----------------------------------- 404 (775)
T ss_pred ----hheeeeee--cccCcEEEEecCCceEEEEEecCCcchhhhh-----------------------------------
Confidence 78999984 4577899999999999999995543222100
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
.. ..+|...|.+++++..+ .+|+++ .|+++++|++...+.....+.+.
T Consensus 405 -----------------------------a~-~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 405 -----------------------------AQ-ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred -----------------------------hh-hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 00 27899999999997665 567777 89999999998733221111000
Q ss_pred -CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 272 -PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 272 -~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
......|...|++++++|+. +++|||+.|.+.++|++....+ ..+ +.+|..+|.++.|+|..
T Consensus 455 ~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l----~~v------------LsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRL----LGV------------LSGHTRGVWCVSFSKND 517 (775)
T ss_pred hhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceE----EEE------------eeCCccceEEEEecccc
Confidence 01345799999999999998 9999999999999999996653 344 44556899999999999
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+.+++++ |.+|+||.+.+ ..+++++.+|...+. .+.|-.+++.|++++.||-|+||+++++++
T Consensus 518 q~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVl---------------ra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVL---------------RASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred ceeEeccCCceEEEEEecc-ceeeeeecCccceeE---------------eeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999985 69999999997 799999999998754 899999999999999999999999999999
Q ss_pred eeeeeccCCCceeEEEEcCCCCC
Q 043890 430 EATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
+. ++.+|...|+.+..++....
T Consensus 582 ~~-tlD~H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 582 EM-TLDAHNDRVWALSVSPLLDM 603 (775)
T ss_pred hh-hhhhccceeEEEeecCccce
Confidence 99 99999999999999998774
No 47
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-30 Score=211.90 Aligned_cols=256 Identities=21% Similarity=0.295 Sum_probs=201.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
-.+.|+++.|+++|.+|++++.|..++|||..+++. ..++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence 368899999999999999999999999999999987 56666665 5
Q ss_pred cceeeEEEEcCCCceEEEeeC--CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 119 KINKIRWCQTANGALFLLSTN--DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
.|..++| ......++.++. |.+|+..++.+.+.+.
T Consensus 58 G~~~~~F--th~~~~~i~sStk~d~tIryLsl~dNkylR----------------------------------------- 94 (311)
T KOG1446|consen 58 GVDLACF--THHSNTVIHSSTKEDDTIRYLSLHDNKYLR----------------------------------------- 94 (311)
T ss_pred cccEEEE--ecCCceEEEccCCCCCceEEEEeecCceEE-----------------------------------------
Confidence 6888999 444445555554 8899999998776432
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
|+.||...|..|+.+|-+..++++ .|++|++||++..++...+
T Consensus 95 ----------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-------- 138 (311)
T KOG1446|consen 95 ----------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-------- 138 (311)
T ss_pred ----------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--------
Confidence 259999999999999999999999 8999999999976643321
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
+...-..++|+|.| -++|++.....|++||+|.-.. .+..++.... +-....+.+.|||||++|+.
T Consensus 139 --~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 139 --NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITD---------NDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred --ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCC---------CCccceeeeEEcCCCCEEEE
Confidence 12222357899999 8999998888999999998642 2344444331 11257899999999999998
Q ss_pred ecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 RDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
++. +.+++.|.-. +..+.++..+...-.. . ..++|+||++++++|+.||+|++|++++|..+. .+
T Consensus 205 sT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~--------~----~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~-~~ 270 (311)
T KOG1446|consen 205 STNASFIYLLDAFD-GTVKSTFSGYPNAGNL--------P----LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA-VL 270 (311)
T ss_pred EeCCCcEEEEEccC-CcEeeeEeeccCCCCc--------c----eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee-Ee
Confidence 865 9999999986 6777888776544210 0 178999999999999999999999999999988 66
Q ss_pred cc
Q 043890 435 EA 436 (509)
Q Consensus 435 ~~ 436 (509)
.+
T Consensus 271 ~~ 272 (311)
T KOG1446|consen 271 RG 272 (311)
T ss_pred cC
Confidence 65
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-30 Score=237.67 Aligned_cols=361 Identities=15% Similarity=0.202 Sum_probs=272.6
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
...|+|+.-+|+.-+||+|-.||.|+||++.+... ...+.||. ..
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-----------------------~~tfngHK------------~A 109 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-----------------------LITFNGHK------------AA 109 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCce-----------------------eeeecccc------------cc
Confidence 46899999999999999999999999999998766 67889999 88
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
|+.+.| +..|.+|++|+.|+.|.+||+-...-...+..+ ...++...|.. ...++++.
T Consensus 110 Vt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH---------------kd~iT~~~F~~-----~~~~lvS~ 167 (888)
T KOG0306|consen 110 VTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH---------------KDSITQALFLN-----GDSFLVSV 167 (888)
T ss_pred eEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecc---------------hHHHhHHhccC-----CCeEEEEe
Confidence 999999 999999999999999999999765432222211 11122222222 23466788
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccC------------------
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI------------------ 260 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~------------------ 260 (509)
+.+..+++||+.+. .|..+. ..|.+.++.+++.+ +.++++ .|+.+++|++..
T Consensus 168 sKDs~iK~WdL~tq------hCf~Th-vd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQ------HCFETH-VDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred ccCceEEEEecccc------eeeeEE-ecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccce
Confidence 99999999999874 444443 67889999999987 667776 899999999810
Q ss_pred --------------------------------------------------------------------------------
Q 043890 261 -------------------------------------------------------------------------------- 260 (509)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (509)
T Consensus 239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence
Q ss_pred -------------CCce----------eeEeeccC-------------CccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 261 -------------SNQS----------FNIVDVKP-------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 261 -------------~~~~----------~~~~~~~~-------------~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
+... ..++.+.. ..+.+|...|.+++++.+. ..++ ++..+.|
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~-Sga~~Si 396 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLA-SGAGESI 396 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeee-ecCCCcE
Confidence 0000 00000010 1345788899999999985 4444 4456789
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeeccccc
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
++|+..+.+. ++++.. ..+.+..|-|.+++++.|.. |.+.+||+.+ ...+.++++|.+.+
T Consensus 397 kiWn~~t~kc----iRTi~~--------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 397 KIWNRDTLKC----IRTITC--------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI 457 (888)
T ss_pred EEEEccCcce----eEEecc--------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce
Confidence 9999998874 566664 46889999999999999976 9999999997 78888889999886
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC-----CCceeeeeeccC-------CCceeEEEEcCCCC
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA-----PGSTEATTLEAS-------KNPMRRQVQTPSRP 451 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~-------~~~v~~~~~s~~~~ 451 (509)
. +++.+||++.+++|+.|.+|++||.. .|...+ .+.-+ ...+.++.+||+++
T Consensus 458 W---------------si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k-~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 458 W---------------SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK-VLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred e---------------eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce-eeeeccceEEeccccEEEEEEcCCCc
Confidence 6 89999999999999999999999975 122222 22222 25678999999999
Q ss_pred CCccc---ceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 452 SRSLS---SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 452 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
...++ ..++++.-........|.| |+-||.+|..+||++++++|+. .++.+|
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYG----HkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYG----HKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecc----cccceeEEeccCCcCeEEeccCCCceEEe
Confidence 86655 5566665444333444555 4789999999999999999998 799998
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.2e-30 Score=218.11 Aligned_cols=299 Identities=19% Similarity=0.322 Sum_probs=230.1
Q ss_pred ccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcc
Q 043890 28 FGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPE 107 (509)
Q Consensus 28 ~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 107 (509)
+..|.....+.|.+.|+++... ++.+++|+.||.+++||..... ...+.||.
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~------------------------~~~~~Ght-- 144 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS------------------------IKTIVGHT-- 144 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce------------------------EEEEecCC--
Confidence 3334445556799999999987 7899999999999999987554 47888998
Q ss_pred hhhccchhhhccceeeEEE-EcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCcccc
Q 043890 108 FDYLKSLEIEEKINKIRWC-QTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLA 186 (509)
Q Consensus 108 ~~~~~~~~~~~~v~~l~~~-~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (509)
++|.+++|. .++....|++++.|.++++|.++.++.......
T Consensus 145 ----------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~--------------------------- 187 (423)
T KOG0313|consen 145 ----------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK--------------------------- 187 (423)
T ss_pred ----------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---------------------------
Confidence 889999986 333344799999999999999987764432110
Q ss_pred CCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCC-ce
Q 043890 187 NGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QS 264 (509)
Q Consensus 187 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~-~~ 264 (509)
. ..||...|.+++..++|..+++| -|..|.+|+..+.. ..
T Consensus 188 -------------------------------------~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 188 -------------------------------------V-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred -------------------------------------H-hcccccceeEEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 0 15899999999999999999999 89999999933211 00
Q ss_pred eeE----------------eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 265 FNI----------------VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 265 ~~~----------------~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
++- ...+...+.+|..+|.++.|++. ..+.+++.|.+|+.||+.+++. ...+...
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~----~~~~~~~--- 300 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGL----KSTLTTN--- 300 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccc----eeeeecC---
Confidence 000 00011356899999999999994 6899999999999999999885 2333333
Q ss_pred CCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCC--ceEEEeecccccccccccccCCCccceeeEEEcC
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
..+.++.++|..++|++|+ |..+++||.+++.. ..+++.+|..++. ++.|+|
T Consensus 301 ----------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs---------------svkwsp 355 (423)
T KOG0313|consen 301 ----------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS---------------SVKWSP 355 (423)
T ss_pred ----------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh---------------heecCC
Confidence 4789999999999999985 69999999997543 4567888999876 899999
Q ss_pred CCC-EEEEeeCCCcEEEEeCCCCc-eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccc
Q 043890 406 DGL-RVATGSYSNLFRVFGCAPGS-TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTK 483 (509)
Q Consensus 406 ~~~-~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (509)
... .|++++.|+++++||+++.. ++. .+.+|. ++
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~ply-dI~~h~-------------------------------------------DK 391 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAPLY-DIAGHN-------------------------------------------DK 391 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCcce-eeccCC-------------------------------------------ce
Confidence 665 57899999999999999766 555 555554 77
Q ss_pred eEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 484 LLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 484 i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
|.++.|+..+ ++++|+. ++++||.
T Consensus 392 vl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 392 VLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred EEEEeccCCc-eEEeccCcceEEEec
Confidence 8888886443 6666665 8888874
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.5e-30 Score=226.62 Aligned_cols=275 Identities=17% Similarity=0.314 Sum_probs=217.3
Q ss_pred cccceEEEEECCCCCe-EEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGDH-LATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~-la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
..+.|++++|+|...+ +|+.+. -.+.||+..+... ...+.-..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~-----------------------~k~~srFk------------ 68 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV-----------------------RKTFSRFK------------ 68 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhh-----------------------hhhHHhhc------------
Confidence 4689999999997533 454443 4799999887765 22222222
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++.| -.||++|+.|...|.|+|||+.+......
T Consensus 69 ~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~----------------------------------------- 105 (487)
T KOG0310|consen 69 DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ----------------------------------------- 105 (487)
T ss_pred cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH-----------------------------------------
Confidence 67999999 88999999999999999999766433322
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+.+|+.++..+.|+|.++ .|++| +|+.+++||+.+.... ..+
T Consensus 106 ----------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~--------~~l 149 (487)
T KOG0310|consen 106 ----------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ--------AEL 149 (487)
T ss_pred ----------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE--------EEe
Confidence 378999999999999765 56667 8999999999976531 267
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.+|++.|.+.+|+|..+.++++|+.||.|++||++.... .+..+. |..+|.++.+-|.|..+++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~eln-------------hg~pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELN-------------HGCPVESVLALPSGSLIAS 213 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEec-------------CCCceeeEEEcCCCCEEEE
Confidence 899999999999998767999999999999999998641 133333 4479999999999999999
Q ss_pred ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 356 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 356 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
++.+.|+|||+.++++.+..+..|...++ |+.+..++..|++++-|+.|++||+.+-+.+.
T Consensus 214 AgGn~vkVWDl~~G~qll~~~~~H~KtVT---------------cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~---- 274 (487)
T KOG0310|consen 214 AGGNSVKVWDLTTGGQLLTSMFNHNKTVT---------------CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH---- 274 (487)
T ss_pred cCCCeEEEEEecCCceehhhhhcccceEE---------------EEEeecCCceEeecccccceEEEEccceEEEE----
Confidence 98899999999976777776666776655 99999999999999999999999987666554
Q ss_pred cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCce
Q 043890 436 ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSL 504 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i 504 (509)
.+.+..+|.+++.+|++..+++|-.+++
T Consensus 275 -----------------------------------------s~~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 275 -----------------------------------------SWKYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred -----------------------------------------eeecccceeeEEecCCCceEEEecccce
Confidence 2224567888888888877777776544
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=8e-31 Score=212.23 Aligned_cols=297 Identities=13% Similarity=0.150 Sum_probs=229.1
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
++||..+|+-+.++.+|.+|.+++.|....||-..+++. +.++.||.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------------lGty~GHt---------- 52 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------------LGTYDGHT---------- 52 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------------eeeecCCC----------
Confidence 567999999999999999999999999999999988888 89999999
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.|.++.. +-+.+++++|+.|.++++||+.+|+++........ ...+.|+.+|+......
T Consensus 53 --GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~----------------Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 53 --GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP----------------VKRVDFSFGGNLILAST 112 (327)
T ss_pred --ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecCCe----------------eEEEeeccCCcEEEEEe
Confidence 88999999 88999999999999999999999987766544322 12234444444432222
Q ss_pred cCCCCCCCccccccccccccc-eeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETS-LVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
--.-+....|.++|+...... ...++.... ..+...++.+-|.|-++++++| +||.|.+||.+++.....
T Consensus 113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~------- 184 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD------- 184 (327)
T ss_pred hhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee-------
Confidence 222344556777776644322 222333333 5566889999999999999999 999999999999876543
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
....|...|+.+.++++. .++++++.|.+-++||.++-.. ++++... .++++.+++|...++
T Consensus 185 s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~te-------------~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 185 SDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTTE-------------RPVNTAAISPLLDHV 246 (327)
T ss_pred chhhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeeec-------------ccccceecccccceE
Confidence 556789999999999998 9999999999999999999775 5677655 489999999988877
Q ss_pred EEec--C-CeEEEEECCCC-----------CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcE
Q 043890 354 LSRD--Y-MTLKLWDINMD-----------SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLF 419 (509)
Q Consensus 354 ~s~~--~-~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 419 (509)
+.|+ + ..|.-=+.+.. .+.+..+++|-+++. +++|+|+|+..++|++||.|
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN---------------svAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN---------------SVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc---------------eeEECCCCcccccCCCCceE
Confidence 7753 2 33322222210 234556777777655 99999999999999999999
Q ss_pred EEEeCCC
Q 043890 420 RVFGCAP 426 (509)
Q Consensus 420 ~iw~~~~ 426 (509)
++.-.+.
T Consensus 312 R~h~Fd~ 318 (327)
T KOG0643|consen 312 RLHHFDS 318 (327)
T ss_pred EEEEecc
Confidence 9987654
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=1.8e-30 Score=213.69 Aligned_cols=249 Identities=19% Similarity=0.343 Sum_probs=206.7
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
...+.+|+ +.|+.+.| +|+|.+|++|+.|..|.+|++.....- .
T Consensus 40 ~m~l~gh~------------geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN-~--------------------- 83 (338)
T KOG0265|consen 40 IMLLPGHK------------GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCEN-F--------------------- 83 (338)
T ss_pred hhhcCCCc------------ceEEEEEE--CCCCCeEeecCCcceEEEEeccccccc-e---------------------
Confidence 34566777 78999999 999999999999999999997643210 0
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
| .+.+|.++|..+.|.++++.++++ .|.+|+.|
T Consensus 84 ------------------------------~----------------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 84 ------------------------------W----------------VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred ------------------------------e----------------eeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 0 137899999999999999999999 99999999
Q ss_pred EccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 257 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
|+++++... ....|..-++++.-+.-|..++.+++.|+++++||+|.... +++++..
T Consensus 118 D~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~~t~~~k----------- 174 (338)
T KOG0265|consen 118 DAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----IKTFENK----------- 174 (338)
T ss_pred ecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch----hhccccc-----------
Confidence 999988653 67889999999987767777888999999999999998764 4555443
Q ss_pred ccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 337 IIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
..++++.|..++.-+.+|. |+.|++||++. +.....+.+|...++ .+..+++|.++.+-+.
T Consensus 175 --yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt---------------~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 175 --YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADTIT---------------GLSLSRYGSFLLSNSM 236 (338)
T ss_pred --eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCcee---------------eEEeccCCCccccccc
Confidence 4799999999999999976 79999999996 788999999998766 8999999999999999
Q ss_pred CCcEEEEeCCCC----ceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC
Q 043890 416 SNLFRVFGCAPG----STEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP 491 (509)
Q Consensus 416 dg~i~iw~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 491 (509)
|.++++||++.- .++. ++++|. ..|......++|+|
T Consensus 237 d~tvrvwd~rp~~p~~R~v~-if~g~~---------------------------------------hnfeknlL~cswsp 276 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVK-IFQGHI---------------------------------------HNFEKNLLKCSWSP 276 (338)
T ss_pred cceEEEEEecccCCCCceEE-Eeecch---------------------------------------hhhhhhcceeeccC
Confidence 999999999742 2243 555443 12456678999999
Q ss_pred CCcEEEEEec-CceEEEeC
Q 043890 492 TENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 492 ~~~~la~~~~-~~i~v~~~ 509 (509)
++..+..++. ..+|+|++
T Consensus 277 ~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDT 295 (338)
T ss_pred CCCccccccccceEEEeec
Confidence 9999988887 78999985
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=209.30 Aligned_cols=313 Identities=15% Similarity=0.226 Sum_probs=228.5
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+..|..++.+.+|+|||.++|+|+.|-.|+|.|++..-... ..++.... ..-..+ ..+.++-.|.
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~-~~qa~h---PvIRTlYDH~---------- 172 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISG-DTQARH---PVIRTLYDHV---------- 172 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccC-CcccCC---ceEeehhhcc----------
Confidence 34699999999999999999999999999999998432200 00000000 000112 2456666676
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.|+++.| .|....|++++.|++|++||+.....++.++.
T Consensus 173 --devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------------ 212 (430)
T KOG0640|consen 173 --DEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------------ 212 (430)
T ss_pred --Ccccceee--cchhheEEeccCCCeEEEEecccHHHHHHHHH------------------------------------
Confidence 78999999 99999999999999999999987654443221
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.....+|+++.|+|.|.+|++| +...+++||+++.++.... ..
T Consensus 213 -------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-----nP 256 (430)
T KOG0640|consen 213 -------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-----NP 256 (430)
T ss_pred -------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----Cc
Confidence 1223569999999999999999 8999999999987654432 24
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
-.+|.+.|+++.+++.+ ++.++++.||.|++||=-.++. ++++..... ...|.+..|..+|+|++
T Consensus 257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~----------gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHG----------GSEVCSAVFTKNGKYIL 321 (430)
T ss_pred ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcC----------CceeeeEEEccCCeEEe
Confidence 56799999999999999 9999999999999999777663 444442211 25799999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCCCCceeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~ 432 (509)
+.+ |..+++|.+.+ ++++..+.+....-. ... -+...|+....|++.-.+ .+.+.-||.+++..+..
T Consensus 322 sSG~DS~vkLWEi~t-~R~l~~YtGAg~tgr--q~~--------rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 322 SSGKDSTVKLWEIST-GRMLKEYTGAGTTGR--QKH--------RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred ecCCcceeeeeeecC-CceEEEEecCCcccc--hhh--------hhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 864 79999999998 788888876522100 000 014667777778776654 57899999998877652
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.--+| +..+..+.-+|.+.-+.++++ -..+.||
T Consensus 391 ~slgH-------------------------------------------n~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 391 LSLGH-------------------------------------------NGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cccCC-------------------------------------------CCCceEEEeCCCCCceeeecccceeeeee
Confidence 22333 456677777777777777776 4666665
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=219.21 Aligned_cols=234 Identities=16% Similarity=0.276 Sum_probs=200.6
Q ss_pred cCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCC
Q 043890 91 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNG 170 (509)
Q Consensus 91 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 170 (509)
.+..+++...+.+|. +.|.++++ .|.++.|++|+.|++|+|||+.+++++..
T Consensus 137 WHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt-------------- 188 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT-------------- 188 (460)
T ss_pred ccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe--------------
Confidence 344566777888998 89999999 89999999999999999999999875432
Q ss_pred CcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c
Q 043890 171 NVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D 249 (509)
Q Consensus 171 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 249 (509)
+.+|...|+.+++++-..||.++ .
T Consensus 189 -------------------------------------------------------ltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 189 -------------------------------------------------------LTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred -------------------------------------------------------ecchhheeeeeeecccCceEEEecC
Confidence 47888999999999999999999 9
Q ss_pred CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCC
Q 043890 250 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPG 329 (509)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 329 (509)
|+.|+.||++..+.+ ..+.+|-..|.+++.+|.- ..|++|+.|.++++||+++... +..+.+
T Consensus 214 dk~VKCwDLe~nkvI--------R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~----V~~l~G----- 275 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVI--------RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS----VHVLSG----- 275 (460)
T ss_pred CCeeEEEechhhhhH--------HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce----EEEecC-----
Confidence 999999999987654 3678999999999999997 9999999999999999999764 455544
Q ss_pred CccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC
Q 043890 330 SRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 330 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
|..+|.++.+.|-...+++|+ |++|++||++. ++.+.++..|...+. +++.+|...
T Consensus 276 -------H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvr---------------al~lhP~e~ 332 (460)
T KOG0285|consen 276 -------HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVR---------------ALCLHPKEN 332 (460)
T ss_pred -------CCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccceee---------------EEecCCchh
Confidence 558999999999888888886 79999999996 788888888876544 899999999
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCC
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
.+|+++.| .|+-|++..|..+. .+.+|...+.++....|+
T Consensus 333 ~fASas~d-nik~w~~p~g~f~~-nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 333 LFASASPD-NIKQWKLPEGEFLQ-NLSGHNAIINTLSVNSDG 372 (460)
T ss_pred hhhccCCc-cceeccCCccchhh-ccccccceeeeeeeccCc
Confidence 99999888 78999999999998 788888777777665543
No 55
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.4e-31 Score=224.35 Aligned_cols=285 Identities=19% Similarity=0.298 Sum_probs=224.7
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+-.|.+.+..+.|-++...|++|+.|..|++|+....+. ....++.|-.
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC----------
Confidence 345999999999999999999999999999999886653 1134455544
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.|+.+.| .+++.++++++.|+.+++|++...+....
T Consensus 220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T--------------------------------------- 256 (459)
T KOG0288|consen 220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT--------------------------------------- 256 (459)
T ss_pred --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh---------------------------------------
Confidence 77999999 99999999999999999999998876654
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|++.|+++.|......+++| .|.+|++||+....+..++
T Consensus 257 ------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~------- 299 (459)
T KOG0288|consen 257 ------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV------- 299 (459)
T ss_pred ------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-------
Confidence 47899999999998776668888 8999999999975544221
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+ ....+..|+.+ . ..+++|..|+.|++||+++... .+..+.. +.|+++..+++|..|.
T Consensus 300 l--~~S~cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~ls~~g~~lL 357 (459)
T KOG0288|consen 300 L--PGSQCNDIVCS--I-SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDLSMDGLELL 357 (459)
T ss_pred c--ccccccceEec--c-eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEeeccCCeEEe
Confidence 1 23345556665 2 5799999999999999999874 3444443 5899999999999998
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 433 (509)
+++ |..+.+.|+++ ......+....... --+++.+.|||++.|+++|+.||.|+||++.++++.. .
T Consensus 358 sssRDdtl~viDlRt-~eI~~~~sA~g~k~-----------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~-~ 424 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRT-KEIRQTFSAEGFKC-----------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK-V 424 (459)
T ss_pred eecCCCceeeeeccc-ccEEEEeecccccc-----------ccccceeEECCCCceeeeccCCCcEEEEEccCceEEE-E
Confidence 876 69999999997 56666665433211 1112389999999999999999999999999999887 5
Q ss_pred eccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 434 LEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
+..... ...|++++|+|.|..|+.++. ..+.+|
T Consensus 425 l~~s~s-----------------------------------------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 425 LSLSTS-----------------------------------------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCC-----------------------------------------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 554331 135899999999988888877 667776
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.5e-29 Score=235.46 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=214.0
Q ss_pred EeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeec
Q 043890 23 KFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ 102 (509)
Q Consensus 23 ~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (509)
+|.+.||++...+. |...|.....++++..+++++.+.....|+...+.. .-.+...... ... ...+.
T Consensus 5 k~rh~~g~~~k~~~--~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~----v~~~~~~G~~-~~~-----~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPARPDR--HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA----VLKHTDYGKL-ASN-----PPILL 72 (493)
T ss_pred cccccccccCCccc--ceeccccccccCCCCCcEeECCceEEEEEecCCceE----EeeccccccC-CCC-----CceEe
Confidence 56677776655533 677788888888877777788888888888654422 0000000000 000 12466
Q ss_pred cCCcchhhccchhhhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccC
Q 043890 103 SHEPEFDYLKSLEIEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSP 181 (509)
Q Consensus 103 ~h~~~~~~~~~~~~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (509)
+|. +.|++++| +| ++++|++|+.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------ 114 (493)
T PTZ00421 73 GQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------ 114 (493)
T ss_pred CCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCcccccc------------------------
Confidence 787 88999999 88 7889999999999999999764311000
Q ss_pred CccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEcc
Q 043890 182 KPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLE 259 (509)
Q Consensus 182 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~ 259 (509)
..+... +.+|...|.+++|+|++ ++|+++ .|+.|++||++
T Consensus 115 -------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 115 -------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred -------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 001111 37899999999999985 689998 89999999999
Q ss_pred CCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
+++... .+..|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+..+.. .
T Consensus 157 tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~-----------~ 212 (493)
T PTZ00421 157 RGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEAHAS-----------A 212 (493)
T ss_pred CCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEecCCC-----------C
Confidence 876432 456789999999999998 9999999999999999998764 344443320 1
Q ss_pred cEEEEEEecCCCEEEEec-----CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 340 SISDIKFAKDGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
....+.|.+++..+++++ |+.|++||+++...++.....+.... +....|++++++|++++
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGS 278 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEE
Confidence 345678888877777632 58999999987555555443332111 11457899999999888
Q ss_pred -CCCcEEEEeCCCCceeeeeec-cCCCceeEEEEcCCCC
Q 043890 415 -YSNLFRVFGCAPGSTEATTLE-ASKNPMRRQVQTPSRP 451 (509)
Q Consensus 415 -~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~ 451 (509)
.|+.|++||+.+++.+. ... .+..+...+++.|...
T Consensus 279 kgDg~Iriwdl~~~~~~~-~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 279 KGEGNIRCFELMNERLTF-CSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred eCCCeEEEEEeeCCceEE-EeeccCCCCCcceEeccccc
Confidence 49999999999988776 443 3556788888887543
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=213.16 Aligned_cols=309 Identities=20% Similarity=0.251 Sum_probs=230.2
Q ss_pred CcceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcce
Q 043890 17 PQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFR 96 (509)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (509)
+-...|+... ++ ..+++.+|.+.|+|+.|+.+|.|||||+.+|.|+||...++..
T Consensus 86 D~AflW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~---------------------- 140 (399)
T KOG0296|consen 86 DLAFLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE---------------------- 140 (399)
T ss_pred ceEEEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce----------------------
Confidence 3346788876 22 4667788999999999999999999999999999999998876
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSS 176 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (509)
...+...- ..|.=|.| +|.+..|+.|+.||.+.+|.+.++...+++.. +.
T Consensus 141 -~~~~~~e~------------~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~G---------------h~ 190 (399)
T KOG0296|consen 141 -QWKLDQEV------------EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQALCKVMSG---------------HN 190 (399)
T ss_pred -EEEeeccc------------CceEEEEe--cccccEEEeecCCCcEEEEECCCcceeeEecC---------------CC
Confidence 33332111 33556677 88999999999999999999998654444332 45
Q ss_pred CCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEE
Q 043890 177 NNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINL 255 (509)
Q Consensus 177 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~i 255 (509)
..++...|.|+|+.+ +.+..+++|++|+..+..... ...........++.++..+..++.| .++.+++
T Consensus 191 ~~ct~G~f~pdGKr~-----~tgy~dgti~~Wn~ktg~p~~------~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~ 259 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRI-----LTGYDDGTIIVWNPKTGQPLH------KITQAEGLELPCISLNLAGSTLTKGNSEGVACG 259 (399)
T ss_pred CCcccccccCCCceE-----EEEecCceEEEEecCCCceeE------EecccccCcCCccccccccceeEeccCCccEEE
Confidence 556777888888765 555668999999988763321 1112224457788888889889999 8999998
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCCCC--cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSF 333 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (509)
-+..+++.........+.....+...+.++.+.|... .+.|+|+.||+|.|||+...++ +..-.
T Consensus 260 ~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-----R~~c~--------- 325 (399)
T KOG0296|consen 260 VNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-----RHICE--------- 325 (399)
T ss_pred EccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----heecc---------
Confidence 8887766543321111222234455555555554321 5889999999999999998774 32222
Q ss_pred cccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 334 FTEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
|..+|..+.|-+ ..+|+++ .+|.|++||.++ ++++..+.+|...+. +++++|+.++++|
T Consensus 326 ---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il---------------~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 326 ---HEDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTGHQMGIL---------------DFALSPQKRLVVT 385 (399)
T ss_pred ---CCCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEecCchhee---------------EEEEcCCCcEEEE
Confidence 336899999998 5566654 579999999998 899999999988755 9999999999999
Q ss_pred eeCCCcEEEEeCC
Q 043890 413 GSYSNLFRVFGCA 425 (509)
Q Consensus 413 ~~~dg~i~iw~~~ 425 (509)
++.|++.+||++.
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 9999999999874
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2e-29 Score=240.40 Aligned_cols=251 Identities=19% Similarity=0.343 Sum_probs=206.8
Q ss_pred ccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCC-CCCCCccccccccccccccCCcceEEeeeccCCcchhh
Q 043890 32 TAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDT-KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDY 110 (509)
Q Consensus 32 ~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 110 (509)
+...+.+|...|++++|+|+++++++|+.|++|+|||+... .. +..+.+|.
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~-----------------------~~~l~gH~----- 246 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN-----------------------LKTLKGHS----- 246 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE-----------------------EEEecCCC-----
Confidence 34444679999999999999999999999999999999433 44 78899999
Q ss_pred ccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 111 LKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 111 ~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..|++++| +|+++++++|+.|++|+|||+.++++...
T Consensus 247 -------~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~---------------------------------- 283 (456)
T KOG0266|consen 247 -------TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRK---------------------------------- 283 (456)
T ss_pred -------CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEe----------------------------------
Confidence 78999999 99999999999999999999998654332
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCce-eeEe
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIV 268 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~-~~~~ 268 (509)
+.+|...|++++|++++++|+++ .|+.|++||+.++... ..
T Consensus 284 -----------------------------------l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 326 (456)
T KOG0266|consen 284 -----------------------------------LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLK-- 326 (456)
T ss_pred -----------------------------------eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeee--
Confidence 48899999999999999999999 8999999999987732 11
Q ss_pred eccCCccCCCcc--ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE
Q 043890 269 DVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 269 ~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (509)
.+..+.. +++++.|+|++ .+++++..|+.+++||++.+.. ...+..+... ...+.+...
T Consensus 327 -----~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~---------~~~~~~~~~ 387 (456)
T KOG0266|consen 327 -----LLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL---------VRCIFSPTL 387 (456)
T ss_pred -----cccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc---------ceeEecccc
Confidence 2333333 69999999998 9999999999999999998874 4555544321 024555566
Q ss_pred ecCCCEEEEec-CCeEEEEECCCCCCceEEEeec-ccccccccccccCCCccceeeEEEcCCCCEEEEee--CCCcEEEE
Q 043890 347 AKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS--YSNLFRVF 422 (509)
Q Consensus 347 s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw 422 (509)
++.++++++|+ |+.|++||+.+ ...+..+.+| ...+. .+.++|...++++++ .|+.+++|
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~---------------~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAAVS---------------DLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCcee---------------ccccCCCcCeeeecCcCCCceEEEe
Confidence 88999999986 59999999997 7788888888 44332 789999999999998 68999999
Q ss_pred eCC
Q 043890 423 GCA 425 (509)
Q Consensus 423 ~~~ 425 (509)
..+
T Consensus 452 ~~~ 454 (456)
T KOG0266|consen 452 KYD 454 (456)
T ss_pred cCC
Confidence 864
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.6e-29 Score=200.97 Aligned_cols=244 Identities=16% Similarity=0.259 Sum_probs=192.0
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+|+..|.+++|+|.|++||+|+.|.++.||.-..++. .....+.||+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef---------------------ecv~~lEGHE------------ 105 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF---------------------ECVATLEGHE------------ 105 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCce---------------------eEEeeeeccc------------
Confidence 5999999999999999999999999999998765433 4478899999
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.+++| +++|++||+++.|+.|-||.+..+..
T Consensus 106 nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddE-------------------------------------------- 139 (312)
T KOG0645|consen 106 NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDE-------------------------------------------- 139 (312)
T ss_pred cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCc--------------------------------------------
Confidence 77999999 99999999999999999999985431
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.+|..+ +.+|...|..+.|+|...+|+++ .|++|++|+-.....-..+ ..+.
T Consensus 140 ---------------------fec~aV-L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~-----~tl~ 192 (312)
T KOG0645|consen 140 ---------------------FECIAV-LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV-----QTLD 192 (312)
T ss_pred ---------------------EEEEee-eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEE-----EEec
Confidence 112222 48899999999999999999999 8999999987732211111 3788
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|...|.+++|++.| ..|++++.|++++||-+.+.- . ..|...+..+.|. .-.|+++
T Consensus 193 g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~---------~-----------~~~sr~~Y~v~W~--~~~IaS~ 249 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL---------S-----------GMHSRALYDVPWD--NGVIASG 249 (312)
T ss_pred CccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc---------c-----------hhcccceEeeeec--ccceEec
Confidence 999999999999998 999999999999999866431 0 1133678999998 4456664
Q ss_pred -cCCeEEEEECCCC-CCceE-----EEeecccccccccccccCCCccceeeEEEcCC-CCEEEEeeCCCcEEEEeCC
Q 043890 357 -DYMTLKLWDINMD-SGPVA-----TFQVHEYLRPKLCDLYENDSIFDKFECCLSGD-GLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 357 -~~~~i~iwd~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~ 425 (509)
+|+.|++|.-... ..+.. .-..|... |++++|.|. ...|++|+.||.|++|.+.
T Consensus 250 ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---------------VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---------------VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCchHHHHHhhhcccccc---------------cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6799999976531 11211 22234433 339999994 6789999999999999875
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-30 Score=207.25 Aligned_cols=243 Identities=20% Similarity=0.324 Sum_probs=196.7
Q ss_pred cccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
-.+.+..|+|+++ .+.+++++.||+++|||+..... .+..++.|.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----------------------Pi~~~kEH~------------ 104 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----------------------PIHKFKEHK------------ 104 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----------------------chhHHHhhh------------
Confidence 3588999999997 47888889999999999654433 267788887
Q ss_pred ccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 118 EKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 118 ~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.++.| ++ +++.+++++.|++|++|+......++
T Consensus 105 ~EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~----------------------------------------- 141 (311)
T KOG0277|consen 105 REVYSVDW--NTVRRRIFLTSSWDGTIKLWDPNRPNSVQ----------------------------------------- 141 (311)
T ss_pred hheEEecc--ccccceeEEeeccCCceEeecCCCCcceE-----------------------------------------
Confidence 67999999 54 55678888999999999987654322
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+ +.+|...|....|+|. .++++++ .|+.+++||++.....+ .
T Consensus 142 ---------------------------T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~--------~ 185 (311)
T KOG0277|consen 142 ---------------------------T-FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM--------S 185 (311)
T ss_pred ---------------------------e-ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee--------E
Confidence 2 3889999999999995 6788888 89999999999876443 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 353 (509)
+..|...|.++.|+.-..+++++|+.|+.|+.||+++-+. ++. .+.+|.-.|..++|||... +|
T Consensus 186 i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~---pl~------------eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT---PLF------------ELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc---cce------------eecCCceEEEEEecCcchhhHh
Confidence 6779999999999987779999999999999999998652 222 2455668999999999654 67
Q ss_pred EEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeC
Q 043890 354 LSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 354 ~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 424 (509)
+++++ -+++|||...+...+.+...|+..+. .+.|++ ++.++|+++.|+.++||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~---------------g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVC---------------GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEe---------------ccccccccCceeeecccccceeeecc
Confidence 77875 99999999876677777777776644 677876 5679999999999999984
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=198.49 Aligned_cols=212 Identities=19% Similarity=0.328 Sum_probs=180.3
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
++|..+.| +-||+|.++++.|++|++|+...+.+++
T Consensus 18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~lik------------------------------------------ 53 (307)
T KOG0316|consen 18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIK------------------------------------------ 53 (307)
T ss_pred cceEEEEE--ccCCCEEEEcCCCceEEeecccccceee------------------------------------------
Confidence 88999999 9999999999999999999998775433
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+| .+|..+|..++.+.|+..|++| .|..+.+||+.+++.. ..+.
T Consensus 54 --------------------------tY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~--------Rr~r 98 (307)
T KOG0316|consen 54 --------------------------TY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD--------RRFR 98 (307)
T ss_pred --------------------------ee-cCCCceeeeccccccccccccCCCCceEEEEEcccCeee--------eecc
Confidence 34 7888899999999999999999 9999999999998865 3789
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|.+.|+.+.|+.+. ..+++|+.|..+++||.+.... ++++++... ...|.++..+ +..+++|
T Consensus 99 gH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQildea------------~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDEA------------KDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred cccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhhh------------cCceeEEEec--ccEEEee
Confidence 999999999999997 9999999999999999998763 445555443 3688888875 5677777
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
+ ||+++.||++. +.....+.+|. |++++|++|++.++.++.|+++++.|-.+|++++ .++
T Consensus 162 S~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~-sYk 222 (307)
T KOG0316|consen 162 SVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK-SYK 222 (307)
T ss_pred ccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchhHHHH-Hhc
Confidence 6 79999999996 55554444443 2399999999999999999999999999999998 999
Q ss_pred cCCCceeEE
Q 043890 436 ASKNPMRRQ 444 (509)
Q Consensus 436 ~~~~~v~~~ 444 (509)
+|....+.+
T Consensus 223 Ghkn~eykl 231 (307)
T KOG0316|consen 223 GHKNMEYKL 231 (307)
T ss_pred ccccceeee
Confidence 998666554
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-29 Score=200.64 Aligned_cols=260 Identities=19% Similarity=0.293 Sum_probs=192.2
Q ss_pred EEEEECCC-CCeEEeec-------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 44 SAIEFDKT-GDHLATGD-------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 44 ~~v~~s~~-~~~la~g~-------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.++.|||= .++||++. ..|.+.|.++...+. +.++. ++.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-----------------------i~e~~----------s~d 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-----------------------IQECQ----------SYD 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC-----------------------eEEEE----------eee
Confidence 67999993 34444432 258899999874444 22222 222
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
.++.+..++|+++. .+.+++++.||++++||+....
T Consensus 59 ~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s------------------------------------------- 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPS------------------------------------------- 94 (311)
T ss_pred cccceeEeeecCCC-cceEEEEecCceEEEeccCCCC-------------------------------------------
Confidence 33779999995332 3467888999999999953221
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
.+++. ++.|..+|.++.|++. ++.++++ -|++|++|+...++.+.
T Consensus 95 ------------------------~Pi~~-~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~-------- 141 (311)
T KOG0277|consen 95 ------------------------KPIHK-FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ-------- 141 (311)
T ss_pred ------------------------cchhH-HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE--------
Confidence 01112 3889999999999885 4556677 79999999998776553
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRH 352 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 352 (509)
++.+|..-|...+|+|..++++++++.|+.+++||++.... ...++. |...|.++.|+. +...
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i~a------------h~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSIEA------------HNSEILCCDWSKYNHNV 205 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEEEe------------ccceeEeecccccCCcE
Confidence 68899999999999999889999999999999999987642 222433 447899999998 5566
Q ss_pred EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCCcee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
|++|+ |+.|++||+++-+.++..+.+|.-.+. .+.|||.. ..||+++.|-+++|||...+.-.
T Consensus 206 l~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVR---------------kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTPLFELNGHGLAVR---------------KVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred EEecCCCceEEEEehhhccccceeecCCceEEE---------------EEecCcchhhHhhhccccceEEecccccchhh
Confidence 77775 699999999987888999999987765 89999954 68999999999999998855433
Q ss_pred eeeeccCCCceeEE
Q 043890 431 ATTLEASKNPMRRQ 444 (509)
Q Consensus 431 ~~~~~~~~~~v~~~ 444 (509)
..+.+.|++-+..+
T Consensus 271 ~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 271 IETVDHHTEFVCGL 284 (311)
T ss_pred hhhhhccceEEecc
Confidence 32555555433333
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-28 Score=199.76 Aligned_cols=287 Identities=16% Similarity=0.226 Sum_probs=220.5
Q ss_pred eeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCC
Q 043890 99 TEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNN 178 (509)
Q Consensus 99 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (509)
..++||+ .+++.|.+ +.+|.+|++++.|.+..||--.+|+.+-
T Consensus 4 i~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlG----------------------- 46 (327)
T KOG0643|consen 4 ILLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLG----------------------- 46 (327)
T ss_pred cccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceee-----------------------
Confidence 3467888 88999999 9999999999999999999876665221
Q ss_pred ccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEE
Q 043890 179 VSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 257 (509)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd 257 (509)
.| .+|.+.|+|++.+.+.+.+++| .|.++++||
T Consensus 47 ---------------------------------------------ty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 47 ---------------------------------------------TY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred ---------------------------------------------ee-cCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 23 8999999999999999999999 999999999
Q ss_pred ccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-----CCeEEEEECCCCcc---cCCceeeeccccCCC
Q 043890 258 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDLRQSAL---CDSHAILFEEQEAPG 329 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~ 329 (509)
+++++++..+ ....+|..+.|+++| ++++.+.. .+.|.++|++.... ..++...+..++
T Consensus 81 v~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--- 147 (327)
T KOG0643|consen 81 VETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--- 147 (327)
T ss_pred cCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---
Confidence 9999977543 246789999999998 66666554 36799999985431 112233333332
Q ss_pred CccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC
Q 043890 330 SRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 330 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
+.++.+-|.|-+++|++|. +|.|.+||++++.+.+.....|...++ ++++++|..
T Consensus 148 ---------skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~In---------------d~q~s~d~T 203 (327)
T KOG0643|consen 148 ---------SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIN---------------DLQFSRDRT 203 (327)
T ss_pred ---------cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccc---------------cccccCCcc
Confidence 6899999999999999996 599999999986566777777776654 899999999
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccce--eeEe-----ecCC------CCCcccCCC
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSI--TRVV-----RRGS------DVPGVDTNG 475 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~--~~~~-----~~~~------~~~~~~~~~ 475 (509)
++++++.|.+-++||+.+-+.++ ++.. ..|+++.+++|-.++.+.++- ++-+ +.++ ++...+--|
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~K-ty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLK-TYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred eEEecccCccceeeeccceeeEE-Eeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 99999999999999999988887 6664 459999999998877654432 1111 1121 000011111
Q ss_pred cccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 476 NSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 476 ~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
..-.|-.+|++++|||+|+..++|+. +.++|.
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 11235689999999999999999999 667664
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1e-29 Score=213.32 Aligned_cols=251 Identities=16% Similarity=0.318 Sum_probs=198.9
Q ss_pred eEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEee
Q 043890 21 EWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTE 100 (509)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (509)
.|.-...+. ...+.||++.|.|+.|.. +.|++|+.|.+|+|||++++++ +..
T Consensus 221 iWD~n~~~c---~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~-----------------------l~t 272 (499)
T KOG0281|consen 221 IWDKNSLEC---LKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEP-----------------------LNT 272 (499)
T ss_pred EeccccHHH---HHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCch-----------------------hhH
Confidence 355554442 234567999999999874 4999999999999999999998 778
Q ss_pred eccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCcc
Q 043890 101 FQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVS 180 (509)
Q Consensus 101 ~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (509)
+-+|. ..|..+.| ...++++++.|.++.|||+..........
T Consensus 273 lihHc------------eaVLhlrf----~ng~mvtcSkDrsiaVWdm~sps~it~rr---------------------- 314 (499)
T KOG0281|consen 273 LIHHC------------EAVLHLRF----SNGYMVTCSKDRSIAVWDMASPTDITLRR---------------------- 314 (499)
T ss_pred Hhhhc------------ceeEEEEE----eCCEEEEecCCceeEEEeccCchHHHHHH----------------------
Confidence 88888 78999999 34499999999999999998765332211
Q ss_pred CCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEcc
Q 043890 181 PKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 259 (509)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~ 259 (509)
.+.+|...|+.+.|+. ++++++ .|.+|++|++.
T Consensus 315 --------------------------------------------VLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 315 --------------------------------------------VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTS 348 (499)
T ss_pred --------------------------------------------HHhhhhhheeeecccc--ceEEEecCCceEEEEecc
Confidence 1488999999999864 589999 99999999999
Q ss_pred CCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
+.+.. ..+.+|...|.|+.+. + +++++|+.|.+|++||+..+.. ++.+++|+ .
T Consensus 349 t~efv--------Rtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeGHE------------e 401 (499)
T KOG0281|consen 349 TCEFV--------RTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGHE------------E 401 (499)
T ss_pred ceeee--------hhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhchH------------H
Confidence 87765 3678999999888875 4 8999999999999999999975 56666554 7
Q ss_pred cEEEEEEecCCCEEEEec-CCeEEEEECCCCCCc--------eEEEeecccccccccccccCCCccceeeEEEcCCCCEE
Q 043890 340 SISDIKFAKDGRHILSRD-YMTLKLWDINMDSGP--------VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV 410 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 410 (509)
-|.++.|. .+.+++|. ||+|+|||+.....+ +..+..|.+. ||.+.| |...+
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR---------------VFrLQF--D~fqI 462 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR---------------VFRLQF--DEFQI 462 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccce---------------eEEEee--cceEE
Confidence 89999994 68899986 599999999863322 2222233332 447888 67789
Q ss_pred EEeeCCCcEEEEeCCCCce
Q 043890 411 ATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 411 ~~~~~dg~i~iw~~~~~~~ 429 (509)
++++.|.+|.|||..++-.
T Consensus 463 vsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EeccCCCeEEEEEcCCCCc
Confidence 9999999999999986644
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-28 Score=224.22 Aligned_cols=240 Identities=17% Similarity=0.319 Sum_probs=205.2
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeecc-CCcchhhccchhhhc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE 118 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~ 118 (509)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+. ...+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----------------------~~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----------------------TRTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----------------------cccccCCcC------------c
Confidence 78999999999999999999999999999998877 456666 66 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|-+++| . +..+.+|+.|+.|..+|++..+....
T Consensus 262 rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~------------------------------------------ 295 (484)
T KOG0305|consen 262 RVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS------------------------------------------ 295 (484)
T ss_pred eeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh------------------------------------------
Confidence 8999999 4 66899999999999999987653221
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
.+.+|...|..+.|++++++||+| .|+.+.|||........ .+..
T Consensus 296 --------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--------~~~~ 341 (484)
T KOG0305|consen 296 --------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--------TFTE 341 (484)
T ss_pred --------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE--------EEec
Confidence 037899999999999999999999 99999999996655443 5788
Q ss_pred CccceEEEEEeCCCCcEEEEEE--cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 278 LTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
|.+.|.+++|+|-...+||+|+ .|++|++||..++.. +...... +.|.+|.|++..+-|++
T Consensus 342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~----i~~vdtg-------------sQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR----IDSVDTG-------------SQVCSLIWSKKYKELLS 404 (484)
T ss_pred cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE----ecccccC-------------CceeeEEEcCCCCEEEE
Confidence 9999999999998878999976 499999999998874 3333322 58999999999887777
Q ss_pred e---cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 356 R---DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 356 ~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
+ +++.|.||++.+ ..++..+.+|...+. .++++|||..+++|+.|.++++|++-..
T Consensus 405 thG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl---------------~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPS-MKLVAELLGHTSRVL---------------YLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEeccc-cceeeeecCCcceeE---------------EEEECCCCCEEEEecccCcEEeccccCC
Confidence 5 248999999997 788899999987654 8999999999999999999999999864
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-28 Score=236.09 Aligned_cols=315 Identities=14% Similarity=0.231 Sum_probs=227.9
Q ss_pred ccceEEEEECCCCCeEEeec--CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 40 VDIISAIEFDKTGDHLATGD--RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
...|.++..+|+|..+|||+ .||.++||+.+.--........ . -.+.+.....|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~------~-----l~k~l~~m~~h~------------ 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE------N-----LPKHLCTMDDHD------------ 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc------c-----cchhheeecccc------------
Confidence 46799999999999999999 8999999997643210000000 0 011234455555
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|+|+.| ++||++||+|+.|+.|.||..........+ -
T Consensus 70 ~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f---------------------------------------g 108 (942)
T KOG0973|consen 70 GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVF---------------------------------------G 108 (942)
T ss_pred CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccc---------------------------------------c
Confidence 89999999 999999999999999999998751100000 0
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+.++...+.-|. +... +.+|...|.+++|+|++.+|+++ -|+.|.+||.++.+.. ..+.
T Consensus 109 s~g~~~~vE~wk-----------~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~--------~vl~ 168 (942)
T KOG0973|consen 109 STGGAKNVESWK-----------VVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL--------KVLR 168 (942)
T ss_pred ccccccccceee-----------EEEE-EecCCCccceeccCCCccEEEEecccceEEEEccccceee--------eeee
Confidence 012222233332 2233 48899999999999999999999 8999999999988433 3678
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|...|..+.|.|-| ++||+-+.|++|++|++..... .+.+..+..... -..-...+.|||||++|++.
T Consensus 169 ~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i----~k~It~pf~~~~------~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGI----EKSITKPFEESP------LTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cccccccceEECCcc-CeeeeecCCceEEEEEccccee----eEeeccchhhCC------CcceeeecccCCCcCeecch
Confidence 999999999999999 9999999999999999766443 233322211000 11467889999999999995
Q ss_pred c-----CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCC-----CC------------EEEEee
Q 043890 357 D-----YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGD-----GL------------RVATGS 414 (509)
Q Consensus 357 ~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~ 414 (509)
. ...+.|.+-.+ .+.-..+-+|..+++ .+.|+|. .+ .+|+|+
T Consensus 238 nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~e---------------vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVE---------------VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred hhccCCcceeEEEecCC-ceeeeeeecCCCceE---------------EEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 2 26788988875 666778889988765 7778761 11 688999
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN 494 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 494 (509)
.|+.|.||.....+++. -.|. -|...|..|+|+|||.
T Consensus 302 qDrSlSVW~T~~~RPl~---vi~~----------------------------------------lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLF---VIHN----------------------------------------LFNKSIVDMSWSPDGF 338 (942)
T ss_pred CCccEEEEecCCCCchh---hhhh----------------------------------------hhcCceeeeeEcCCCC
Confidence 99999999986665554 1111 1357899999999998
Q ss_pred EEEEEec-CceEEEe
Q 043890 495 SIACAAA-NSLYMYY 508 (509)
Q Consensus 495 ~la~~~~-~~i~v~~ 508 (509)
.|.+++. ++|.++.
T Consensus 339 ~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 339 SLFACSLDGTVALIH 353 (942)
T ss_pred eEEEEecCCeEEEEE
Confidence 7777776 7777753
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.6e-27 Score=196.52 Aligned_cols=273 Identities=18% Similarity=0.257 Sum_probs=205.7
Q ss_pred ccceEEEEECC-CCCeEEeecCCCeEEEEEccCC-CCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 40 VDIISAIEFDK-TGDHLATGDRGGRVVLFERTDT-KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 40 ~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
.+.|.+|+||| ...+|+.|+.||+||+|+++.. ... .+....|.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------~ka~~~~~------------ 72 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------PKAQQSHD------------ 72 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc----------------------chhhhccC------------
Confidence 68999999999 5677779999999999999874 320 12334444
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
++|.+++| +.||..+++|+.|+.+++||+.++...++
T Consensus 73 ~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v----------------------------------------- 109 (347)
T KOG0647|consen 73 GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV----------------------------------------- 109 (347)
T ss_pred CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-----------------------------------------
Confidence 88999999 99999999999999999999998854332
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC--EEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
..|..+|..+.|-+... .|++| -|.+|+.||++....+..+
T Consensus 110 -----------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------- 153 (347)
T KOG0647|consen 110 -----------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL------- 153 (347)
T ss_pred -----------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-------
Confidence 67999999999976655 79999 7999999999987655432
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
...+.+.++..-. .+++++..++.|.+|+|+++.. .+.....+ -.-.+++++..+|....+
T Consensus 154 --~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~t------e~k~~~Sp--------Lk~Q~R~va~f~d~~~~a 214 (347)
T KOG0647|consen 154 --QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPT------EFKRIESP--------LKWQTRCVACFQDKDGFA 214 (347)
T ss_pred --eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcc------hhhhhcCc--------ccceeeEEEEEecCCceE
Confidence 1345566665543 4788888999999999987753 22222111 013689999999888778
Q ss_pred Eec-CCeEEEEECCCCC-CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 355 SRD-YMTLKLWDINMDS-GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
.|+ +|.+.|..+..+. ..-.+++.|...-. . .+.++.|.+++|+|....|+|++.||++.+||-+....++
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~-----~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk- 287 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-V-----NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK- 287 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCC-C-----CCceEEecceEeecccceEEEecCCceEEEecchhhhhhh-
Confidence 776 5999999888521 33456777764322 1 1235667799999999999999999999999998888777
Q ss_pred eeccCCCceeEEEEcCCCC
Q 043890 433 TLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~ 451 (509)
..+.|..||++..|+.+|.
T Consensus 288 ~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNGS 306 (347)
T ss_pred ccCcCCCccceeEecCCCC
Confidence 7777776666666665554
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4e-28 Score=222.02 Aligned_cols=448 Identities=16% Similarity=0.147 Sum_probs=278.8
Q ss_pred ecccceEEEEECCCCCeEEeec--CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeecc-CCcchhh----
Q 043890 38 QEVDIISAIEFDKTGDHLATGD--RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQS-HEPEFDY---- 110 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~---- 110 (509)
.|..+++|++|+++|+|+|+|- ....++||++..... ..++..++..+.++.|.|..+++.+.-. |..-...
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~v-VAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGV-VAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccc-hhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 4778999999999999999986 667899999998775 6677778888888888888777664432 2210000
Q ss_pred ccchhhhccceee--EEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCC-------CCc-------ccCCCCc--
Q 043890 111 LKSLEIEEKINKI--RWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVD-------PSK-------AVGNGNV-- 172 (509)
Q Consensus 111 ~~~~~~~~~v~~l--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~-------~~~~~~~-- 172 (509)
.....-+..|.+. +.+|+.||.|+++++. ..|++|.++.++..+- ..... ..+ .++.|..
T Consensus 155 ~N~~~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~Kykd-piPl~gRs~~lg~lr~n~f~avaCg~gicAe 232 (1080)
T KOG1408|consen 155 VNSSGASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKD-PIPLPGRSYFLGNLRFNEFLAVACGVGICAE 232 (1080)
T ss_pred hcccccccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccC-CccccchhhhccccccchhhhhhhcCccccc
Confidence 0011112344443 2348888988888874 5899999987761111 00000 000 0222211
Q ss_pred --ccCCCCccCCcccc---------------CCCCCcceecCCCCCCCccccccccccccce--------------eeee
Q 043890 173 --ASSSNNVSPKPYLA---------------NGGSPSKEFSFPPGGIPSLRLPTVTSNETSL--------------VARC 221 (509)
Q Consensus 173 --~~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~ 221 (509)
++.+.......|+. ..-.+...+++.+...+.|++++..+.+... ..++
T Consensus 233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~ 312 (1080)
T KOG1408|consen 233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP 312 (1080)
T ss_pred ceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence 11111111111111 1111156678888889999998755432211 1111
Q ss_pred eeeeec---ccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCC------
Q 043890 222 RRVYAH---AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH------ 291 (509)
Q Consensus 222 ~~~~~~---~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~------ 291 (509)
.+.+.. +.-.....+.|++....|.+. .|..+++||++.-+...+. ..+..|...|+.+.--|-+
T Consensus 313 ~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~~~ 387 (1080)
T KOG1408|consen 313 EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSPTA 387 (1080)
T ss_pred cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCccc
Confidence 111110 111224467789999999988 9999999999986654332 3455677777777655521
Q ss_pred ----CcEEEEEEcCCeEEEEECCCCccc---CCce------ee-ecccc--------C---CCCccccccccccEEEEEE
Q 043890 292 ----CNMLAYSSSKGSIRLIDLRQSALC---DSHA------IL-FEEQE--------A---PGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 292 ----~~~l~~~~~dg~i~vwd~~~~~~~---~~~~------~~-~~~~~--------~---~~~~~~~~~~~~~i~~~~~ 346 (509)
+..|++++.|++|++||+.....- ...+ +. +...+ . ........+....+.+++.
T Consensus 388 aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v 467 (1080)
T KOG1408|consen 388 ACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV 467 (1080)
T ss_pred ccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE
Confidence 136999999999999999873210 0000 00 00000 0 0000011223457999999
Q ss_pred ecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC---CCCEEEEeeCCCcEEEE
Q 043890 347 AKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG---DGLRVATGSYSNLFRVF 422 (509)
Q Consensus 347 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw 422 (509)
+|+|++||+|+. |.++|||+.. .+.+..+..|+..+. ++.|+. ..++||+++.|.-|+||
T Consensus 468 Sp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEil---------------cLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 468 SPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEIL---------------CLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred CCCcceecccCccCceEEEEehh-hhhhhheecccceeE---------------EEeecCchhhhHhhhhccCCceEEEE
Confidence 999999999986 9999999996 677778888987754 777774 35789999999999999
Q ss_pred eCCCCceeeeeeccCCCceeEEEEcCCCCCC-ccc-ce--eeEeecCCCCCcccC--CCcccccccceEEEEEcCCCcEE
Q 043890 423 GCAPGSTEATTLEASKNPMRRQVQTPSRPSR-SLS-SI--TRVVRRGSDVPGVDT--NGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~~-~~--~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
|+.....+.+++.+|...|+++.|...+... .+. +. ...++..+......+ .++..--+..+..|+..|+.+++
T Consensus 532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 9987766666999999999999998776431 111 11 111222111111100 00000114568899999999999
Q ss_pred EEEec-CceEEEeC
Q 043890 497 ACAAA-NSLYMYYA 509 (509)
Q Consensus 497 a~~~~-~~i~v~~~ 509 (509)
++++. .+|+||+.
T Consensus 612 ~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDI 625 (1080)
T ss_pred EEEecccceEEEec
Confidence 99998 79999973
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=223.52 Aligned_cols=252 Identities=15% Similarity=0.245 Sum_probs=208.0
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
-+|.++|..++|+|++.++++|+.|-.|+||++...++ +.++.||.
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-----------------------lftL~GHl----------- 93 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-----------------------LFTLLGHL----------- 93 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEeccccee-----------------------hhhhcccc-----------
Confidence 34999999999999999999999999999999999988 78889998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+-|..+.| ++.-..|+++|.|-+|+||++.+++++.+
T Consensus 94 -DYVRt~~F--HheyPWIlSASDDQTIrIWNwqsr~~iav---------------------------------------- 130 (1202)
T KOG0292|consen 94 -DYVRTVFF--HHEYPWILSASDDQTIRIWNWQSRKCIAV---------------------------------------- 130 (1202)
T ss_pred -ceeEEeec--cCCCceEEEccCCCeEEEEeccCCceEEE----------------------------------------
Confidence 77999999 88888999999999999999998876544
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCcee----------
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF---------- 265 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~---------- 265 (509)
+.+|..-|.|..|+|...+++++ -|.+|++||+..-+...
T Consensus 131 -----------------------------ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~ 181 (1202)
T KOG0292|consen 131 -----------------------------LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQM 181 (1202)
T ss_pred -----------------------------EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhh
Confidence 48899999999999999999999 89999999986422100
Q ss_pred -------eEe---e-ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccc
Q 043890 266 -------NIV---D-VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFF 334 (509)
Q Consensus 266 -------~~~---~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (509)
.+. + +-...+.+|+..|+-++|+|.- .++++|+.|+.|++|.++..+. ++. .++
T Consensus 182 ~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKa-------WEv-------Dtc 246 (1202)
T KOG0292|consen 182 RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKA-------WEV-------DTC 246 (1202)
T ss_pred hccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccc-------eee-------hhh
Confidence 000 0 0013567899999999999997 8999999999999999987653 332 346
Q ss_pred ccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 043890 335 TEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG 413 (509)
Q Consensus 335 ~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 413 (509)
.+|.+.|.++-|+|...++++.+ |++|+|||+.. ...+++++.....-. .++.+|..+++| +
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRFW---------------~laahP~lNLfA-A 309 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRFW---------------ILAAHPELNLFA-A 309 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeEE---------------EEEecCCcceee-e
Confidence 67789999999999999999965 69999999996 788888865433222 788999998776 5
Q ss_pred eCCCcEEEEeCCC
Q 043890 414 SYSNLFRVFGCAP 426 (509)
Q Consensus 414 ~~dg~i~iw~~~~ 426 (509)
+.|+-+.+|.++.
T Consensus 310 gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 310 GHDSGMIVFKLER 322 (1202)
T ss_pred ecCCceEEEEEcc
Confidence 6677788888873
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.2e-27 Score=218.13 Aligned_cols=241 Identities=24% Similarity=0.372 Sum_probs=199.0
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
...|...+..+.|+|++++|++++.+|.|++|++.+.+. ...+..|.
T Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-----------------------~~~~~~~~---------- 93 (289)
T cd00200 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-----------------------VRTLTGHT---------- 93 (289)
T ss_pred EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-----------------------eEEEeccC----------
Confidence 345888999999999999999999999999999987655 45666776
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.++.| +++++++++++.|+.|.+||+.+++....
T Consensus 94 --~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------------------- 130 (289)
T cd00200 94 --SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTT--------------------------------------- 130 (289)
T ss_pred --CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEE---------------------------------------
Confidence 67999999 88888888888899999999985432211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+..|...+.+++|+|++.+++++ .++.|++||+++.+... .
T Consensus 131 ------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--------~ 172 (289)
T cd00200 131 ------------------------------LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA--------T 172 (289)
T ss_pred ------------------------------eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce--------e
Confidence 24577789999999999999999 69999999998665432 3
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+..|...+.++.|+|++ +.+++++.++.|++||++.++. ...+. .|...+.++.|+|++.+++
T Consensus 173 ~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~------------~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 173 LTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC----LGTLR------------GHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred EecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCce----ecchh------------hcCCceEEEEEcCCCcEEE
Confidence 45678899999999998 8899999999999999987653 23332 2336899999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
+++ ++.|++||+.+ .++...+..|...+. +++|+|++++|++++.|+.|++|+
T Consensus 236 ~~~~~~~i~i~~~~~-~~~~~~~~~~~~~i~---------------~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRT-GECVQTLSGHTNSVT---------------SLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCC-ceeEEEccccCCcEE---------------EEEECCCCCEEEEecCCCeEEecC
Confidence 987 79999999986 677777776655433 899999999999999999999996
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=218.26 Aligned_cols=272 Identities=17% Similarity=0.286 Sum_probs=215.8
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
..+-+.|+ ..+.||+|.. ..|++|+..+++. .....-++ ..|+
T Consensus 179 Y~nlldWs-s~n~laValg-~~vylW~~~s~~v-----------------------~~l~~~~~------------~~vt 221 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALG-QSVYLWSASSGSV-----------------------TELCSFGE------------ELVT 221 (484)
T ss_pred hhhHhhcc-cCCeEEEEec-ceEEEEecCCCce-----------------------EEeEecCC------------CceE
Confidence 44557788 5567888774 4799999988875 22222223 6799
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
++.| +++|.+|++|..+|.|.|||..+.+....
T Consensus 222 Sv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~--------------------------------------------- 254 (484)
T KOG0305|consen 222 SVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT--------------------------------------------- 254 (484)
T ss_pred EEEE--CCCCCEEEEeecCCeEEEEehhhcccccc---------------------------------------------
Confidence 9999 99999999999999999999987654332
Q ss_pred CCccccccccccccceeeeeeeeeecc-cccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 279 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
+.+ |...|-+++|. +..+.+| .++.|..+|++..+.... .+.+|.
T Consensus 255 ------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~ 301 (484)
T KOG0305|consen 255 ------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHR 301 (484)
T ss_pred ------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhccc
Confidence 234 88889999998 5678888 999999999998776542 378899
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEEec-
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRD- 357 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~- 357 (509)
..|..++|++++ ++||+|+.|+.+.|||...... ...+ .+|.+.|.+++|+| ...+||+|+
T Consensus 302 qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----~~~~------------~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 302 QEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----KFTF------------TEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred ceeeeeEECCCC-CeeccCCCccceEeccCCCccc----cEEE------------eccceeeeEeeeCCCccCceEEcCC
Confidence 999999999999 9999999999999999955432 3333 44568999999999 456788863
Q ss_pred --CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee--CCCcEEEEeCCCCceeeee
Q 043890 358 --YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS--YSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 358 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~ 433 (509)
|+.|++||..+ +..+..+....+ |..+.|++..+-|+++. .++.|.||+..+.+.+. .
T Consensus 365 s~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~-~ 426 (484)
T KOG0305|consen 365 SADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA-E 426 (484)
T ss_pred CcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee-e
Confidence 69999999996 666666654433 23899999987777653 47799999999988777 7
Q ss_pred eccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 434 LEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+.+|. .+|..++++||+..+++|+. .++++|+
T Consensus 427 l~gH~-------------------------------------------~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 427 LLGHT-------------------------------------------SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecCCc-------------------------------------------ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 77775 67999999999999998887 8999986
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.3e-26 Score=182.00 Aligned_cols=309 Identities=20% Similarity=0.247 Sum_probs=220.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
....|.+++|+|.|.+.|+|+...+++|-....... ....++... -|-....+.-+.|. +
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~---~r~~hea~~-----~pp~v~~kr~khhk------------g 90 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID---LRHAHEAAK-----QPPSVLCKRNKHHK------------G 90 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccC---ccccccccc-----CCCeEEeeeccccC------------c
Confidence 567899999999999999999999999887654322 111111111 01111122333444 8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.+.+| +|+|++|++|+.|++|++...+...+... |
T Consensus 91 siyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~-------------------------------g---------- 127 (350)
T KOG0641|consen 91 SIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNAT-------------------------------G---------- 127 (350)
T ss_pred cEEEEEe--cCccCeEEecCCCceEEEEeccccccccc-------------------------------C----------
Confidence 9999999 99999999999999999988775543211 0
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC----CCCEEEEE--cCCeEEEEEccCCCceeeEeeccC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
.++ -+.-|.+.|+.++|.. .+.+|+++ .|..|++-|..++...
T Consensus 128 ---------~dl--------------e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~-------- 176 (350)
T KOG0641|consen 128 ---------HDL--------------EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF-------- 176 (350)
T ss_pred ---------cce--------------eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc--------
Confidence 000 0367889999999954 35678876 5777888787776643
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
..+.+|.+.|.++- +-++ -++++|+.|.+|++||++-... ++++......+- -..+.|.+++..|.|++
T Consensus 177 ~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~----v~~l~~~~~~~g-----lessavaav~vdpsgrl 245 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSC----VNTLDNDFHDGG-----LESSAVAAVAVDPSGRL 245 (350)
T ss_pred eeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccce----eeeccCcccCCC-----cccceeEEEEECCCcce
Confidence 36788999998763 3344 7999999999999999997653 344432211000 01257999999999999
Q ss_pred EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|++|. |....+||++. ++.++.+..|...+. ++.|+|...||++++.|..|++=|+. |.+..
T Consensus 246 l~sg~~dssc~lydirg-~r~iq~f~phsadir---------------~vrfsp~a~yllt~syd~~ikltdlq-gdla~ 308 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRG-GRMIQRFHPHSADIR---------------CVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAH 308 (350)
T ss_pred eeeccCCCceEEEEeeC-CceeeeeCCCcccee---------------EEEeCCCceEEEEecccceEEEeecc-cchhh
Confidence 99995 69999999995 899999998887765 99999999999999999999999987 33222
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.+ ++.-+ ..|+.++..+.|||..-.+++.+. .+.-+|-
T Consensus 309 -el-----~~~vv---------------------------------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 309 -EL-----PIMVV---------------------------------AEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred -cC-----ceEEE---------------------------------EeccCceEEEEecCccceeeeccCcceEEEec
Confidence 11 11000 125678899999999866666655 6777773
No 73
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=221.51 Aligned_cols=372 Identities=14% Similarity=0.170 Sum_probs=254.9
Q ss_pred ec-ccceEEEEECCCC-CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCc---------------------
Q 043890 38 QE-VDIISAIEFDKTG-DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPE--------------------- 94 (509)
Q Consensus 38 ~h-~~~I~~v~~s~~~-~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (509)
.| .++|++++|..|| .+||+|+..|.+.+||++..+........+.+.+....+-|+
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 35 4999999999998 567888888999999999887744333333233322222221
Q ss_pred ---ceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCC
Q 043890 95 ---FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGN 171 (509)
Q Consensus 95 ---~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (509)
.+++..-.||. .+-.+|+|. ..+|..+.+++.|++++.+++......+........-+...-+.
T Consensus 321 dg~pR~LR~R~GHs------------~Pp~~irfy-~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHS------------APPSCIRFY-GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCcchheeeccCCC------------CCchheeee-ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 12223333444 889999994 57889999999999999999875543333222000000000000
Q ss_pred c-ccCCCCccCCccccCC--CCCcceecCCCCCCCcccccccccccc-ceeeeeeeeeecccccCeEEEEECCCCCEEEE
Q 043890 172 V-ASSSNNVSPKPYLANG--GSPSKEFSFPPGGIPSLRLPTVTSNET-SLVARCRRVYAHAHDYHINSISNNSDGETFIS 247 (509)
Q Consensus 172 ~-~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 247 (509)
. --.-.......|...+ ...-..+.....+....+-|+..+... ...-.+ .. +......+++++.++.|++.+.
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-~~-~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-KR-FKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecC-cc-ccccCcceEEEEEeccCceEEE
Confidence 0 0000011111121111 111223344455566677777665433 111000 00 1223467889999999999999
Q ss_pred E-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc
Q 043890 248 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE 326 (509)
Q Consensus 248 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 326 (509)
| +.|.|-+|+++++-..-+. ..-..|..+|++++...-+ +.+++++.+|.+++||.....+ ...+...
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf-----~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l----~~~l~l~- 534 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSF-----GDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVL----KKSLRLG- 534 (910)
T ss_pred eccCCeEEEEEcccCeeeccc-----ccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcce----eeeeccC-
Confidence 9 9999999999987543211 0225799999999999997 9999999999999999998763 3444433
Q ss_pred CCCCccccccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC
Q 043890 327 APGSRSFFTEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
..+..+..+....+++.+ ++-.|+++|..+ .+.++.+.+|...++ +++|||
T Consensus 535 ------------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nrit---------------d~~FS~ 586 (910)
T KOG1539|consen 535 ------------SSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRIT---------------DMTFSP 586 (910)
T ss_pred ------------CCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhhcccccee---------------eeEeCC
Confidence 467888888877777775 569999999997 788899999988765 999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceE
Q 043890 406 DGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLL 485 (509)
Q Consensus 406 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 485 (509)
||++|++++.|++|++||+.++.++. .+....+..
T Consensus 587 DgrWlisasmD~tIr~wDlpt~~lID---------------------------------------------~~~vd~~~~ 621 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWDLPTGTLID---------------------------------------------GLLVDSPCT 621 (910)
T ss_pred CCcEEEEeecCCcEEEEeccCcceee---------------------------------------------eEecCCcce
Confidence 99999999999999999999999886 222357789
Q ss_pred EEEEcCCCcEEEEEec--CceEEEe
Q 043890 486 HLAWHPTENSIACAAA--NSLYMYY 508 (509)
Q Consensus 486 ~~~~~p~~~~la~~~~--~~i~v~~ 508 (509)
.+.|+|+|.+||+... ++|++|.
T Consensus 622 sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999998876 7999995
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=215.62 Aligned_cols=259 Identities=18% Similarity=0.289 Sum_probs=206.5
Q ss_pred eEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEee
Q 043890 21 EWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTE 100 (509)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (509)
.|++.. ........++|..+|.+++|+++|..+++++.|+.|++||.+++++ ...
T Consensus 241 lW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~-----------------------~~~ 295 (503)
T KOG0282|consen 241 LWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV-----------------------LSR 295 (503)
T ss_pred EEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE-----------------------EEE
Confidence 466654 2233456678999999999999999999999999999999999988 444
Q ss_pred eccCCcchhhccchhhhccceeeEEEEcCCC-ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 101 FQSHEPEFDYLKSLEIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 101 ~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
+... ..++++.| .|++ +.+++|+.|+.|+-||+++++.++.
T Consensus 296 f~~~-------------~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe----------------------- 337 (503)
T KOG0282|consen 296 FHLD-------------KVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKVVQE----------------------- 337 (503)
T ss_pred EecC-------------CCceeeec--CCCCCcEEEEecCCCcEEEEeccchHHHHH-----------------------
Confidence 4322 45899999 7887 7889999999999999999987765
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEc
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 258 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~ 258 (509)
...|-+.|..+.|-++|..++++ +|+.++||+.
T Consensus 338 ----------------------------------------------Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 338 ----------------------------------------------YDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred ----------------------------------------------HHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence 15577889999999999999999 9999999999
Q ss_pred cCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc
Q 043890 259 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
+..-.... ....+.....++..+|++ .+++.-+.|+.|.++.+...-. ....+.|+++...
T Consensus 372 ~~~v~ik~-------i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~va---------- 432 (503)
T KOG0282|consen 372 RIPVPIKN-------IADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSVA---------- 432 (503)
T ss_pred CCCccchh-------hcchhhccCcceecCCCC-CeehhhccCceEEEEecccccc-cCHhhhhcceecc----------
Confidence 87543321 122234455689999998 9999999999999998654321 1113445554422
Q ss_pred ccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCC
Q 043890 339 ASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYS 416 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 416 (509)
+.-..+.|||||++|++|+ +|.+.+||.++ .+.+..++.|...+. .+.|+|.. ..+|+++.|
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci---------------~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCI---------------GVDWHPVEPSKVATCGWD 496 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceE---------------EEEecCCCcceeEecccC
Confidence 4567789999999999996 59999999997 789999999977644 89999964 579999999
Q ss_pred CcEEEEe
Q 043890 417 NLFRVFG 423 (509)
Q Consensus 417 g~i~iw~ 423 (509)
|.|++|+
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999996
No 75
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.7e-28 Score=217.39 Aligned_cols=273 Identities=18% Similarity=0.230 Sum_probs=225.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++.| +|....++++-.+|.|.|||.++...++.+
T Consensus 14 dRVKsVd~--HPtePw~la~LynG~V~IWnyetqtmVksf---------------------------------------- 51 (794)
T KOG0276|consen 14 DRVKSVDF--HPTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------------------- 51 (794)
T ss_pred Cceeeeec--CCCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence 78999999 899999999999999999999987655432
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.-...+|++..|-...+++++| +|..|++|+..+.+.. ..+.
T Consensus 52 -----------------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV--------~~Fe 94 (794)
T KOG0276|consen 52 -----------------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV--------KTFE 94 (794)
T ss_pred -----------------------------eecccchhhheeeeccceEEEecCCceEEEEecccceee--------EEee
Confidence 2234567888888888999999 9999999999998854 4789
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILS 355 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s 355 (509)
+|.+.|++++.+|.. .++++++.|-.|++||.+..=.| .++|++ |...|++++|.| |...+++
T Consensus 95 AH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~qtfeG------------H~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 95 AHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQTFEG------------HEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred ccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---eeEEcC------------cceEEEEEEecCCCccceee
Confidence 999999999999998 89999999999999999875432 455554 458999999999 5668888
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC--CCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG--DGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
++ |++|+||.+.. ..+..++.+|...+. ++++-+ |..+|++|++|.+|+|||..+..+++
T Consensus 159 ~sLDrTVKVWslgs-~~~nfTl~gHekGVN---------------~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~- 221 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGS-PHPNFTLEGHEKGVN---------------CVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ- 221 (794)
T ss_pred eeccccEEEEEcCC-CCCceeeeccccCcc---------------eEEeccCCCcceEEecCCCceEEEeecchHHHHH-
Confidence 86 79999999997 688899999998866 888876 45799999999999999999999998
Q ss_pred eeccCCCceeEEEEcCCCCCC---cccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEE
Q 043890 433 TLEASKNPMRRQVQTPSRPSR---SLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYM 506 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v 506 (509)
+|++|...|..+.|.|.-+-. ..++..|+|........-.++-. -.+|++++-++.+..+++|.+.+...
T Consensus 222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g----leRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG----LERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC----CceEEEEeecCCCCeEEEeccCCcEE
Confidence 999999999999999976653 23467888876654433322221 37899999999999999998854443
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=203.91 Aligned_cols=277 Identities=17% Similarity=0.272 Sum_probs=221.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
...|.++...|....+++|+.|..+.++|...++. +..|.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-----------------------l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-----------------------LATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh-----------------------hhhccCcc------------eE
Confidence 35788888888888999999999999999998887 78999999 78
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
|+.+.| +++...+++++.|..|+||..........
T Consensus 264 i~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~------------------------------------------- 298 (506)
T KOG0289|consen 264 ITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS------------------------------------------- 298 (506)
T ss_pred EEEEEe--ccchhheeecCCcceEEeeccccccCccc-------------------------------------------
Confidence 999999 89999999999999999999865542211
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
...|..+|+.+..+|.|.||+++ .|++..+.|++++...... .-...
T Consensus 299 --------------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v------s~~~s 346 (506)
T KOG0289|consen 299 --------------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV------SDETS 346 (506)
T ss_pred --------------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE------eeccc
Confidence 36799999999999999999999 9999999999998765432 11233
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD- 357 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~- 357 (509)
.-.+++.+|+||| .+|.+|..|+.|++||+..... +.. +.+|.++|..++|+.+|-+|+++.
T Consensus 347 ~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~----~a~------------Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN----VAK------------FPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred cceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc----ccc------------CCCCCCceeEEEeccCceEEEEEec
Confidence 4568999999999 9999999999999999998763 233 445669999999999999999975
Q ss_pred CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc--eeeeeec
Q 043890 358 YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS--TEATTLE 435 (509)
Q Consensus 358 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~ 435 (509)
|+.|++||++. .+.++++...+.. .+.+++|.+.|.+|+.++.|=+|++++-.+.+ ++. .+.
T Consensus 410 d~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~-~~~ 473 (506)
T KOG0289|consen 410 DGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK-ELA 473 (506)
T ss_pred CCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccceeee-hhh
Confidence 48899999996 6677777654431 12289999999999999888778777754433 222 222
Q ss_pred cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCce
Q 043890 436 ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSL 504 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i 504 (509)
.| ....+.+.|.....++++++.+.+
T Consensus 474 ~~-------------------------------------------sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 474 DH-------------------------------------------SGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred hc-------------------------------------------ccccceeeecccceEEeeccchhh
Confidence 22 345677888888888888888544
No 77
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.6e-26 Score=218.55 Aligned_cols=262 Identities=18% Similarity=0.276 Sum_probs=185.0
Q ss_pred ecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC-CceEEE
Q 043890 58 GDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN-GALFLL 136 (509)
Q Consensus 58 g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~l~s 136 (509)
|+.++.|++|+...... ...+.+|. +.|.+++| +|+ +++|++
T Consensus 50 GG~~gvI~L~~~~r~~~-----------------------v~~L~gH~------------~~V~~laf--sP~~~~lLAS 92 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP-----------------------VIKLKGHT------------SSILDLQF--NPCFSEILAS 92 (568)
T ss_pred CCceeEEEeeecCCCce-----------------------EEEEcCCC------------CCEEEEEE--cCCCCCEEEE
Confidence 56678899998765543 67788998 88999999 886 789999
Q ss_pred eeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccc
Q 043890 137 STNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETS 216 (509)
Q Consensus 137 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 216 (509)
|+.||.|++||+.++..... . +
T Consensus 93 gS~DgtIrIWDi~t~~~~~~-~----------------------------------------------i----------- 114 (568)
T PTZ00420 93 GSEDLTIRVWEIPHNDESVK-E----------------------------------------------I----------- 114 (568)
T ss_pred EeCCCeEEEEECCCCCcccc-c----------------------------------------------c-----------
Confidence 99999999999976421000 0 0
Q ss_pred eeeeeeeeeecccccCeEEEEECCCCCEE-EEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcE
Q 043890 217 LVARCRRVYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 294 (509)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 294 (509)
..+... +.+|...|.+++|+|++..+ +++ .|+.|++||+++++.... +. |...|.+++|+|+| .+
T Consensus 115 --~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~SlswspdG-~l 181 (568)
T PTZ00420 115 --KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKWNIKG-NL 181 (568)
T ss_pred --ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEECCCC-CE
Confidence 001111 37889999999999998764 677 899999999998764432 22 45689999999998 89
Q ss_pred EEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C----CeEEEEECCCC
Q 043890 295 LAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y----MTLKLWDINMD 369 (509)
Q Consensus 295 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~----~~i~iwd~~~~ 369 (509)
|++++.|+.|++||+++++. +..+..|..... ...+....|++++.+|++++ + +.|+|||++..
T Consensus 182 Lat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~-------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKN-------TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEecCCEEEEEECCCCcE----EEEEecccCCce-------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 99999999999999999864 344544431100 01123334568888888853 3 37999999965
Q ss_pred CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCC
Q 043890 370 SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPS 449 (509)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~ 449 (509)
..++..+..+... . .+ +.....++|.++++|+.|+.|++|++..+......-..+..|...++|.|.
T Consensus 251 ~~pl~~~~ld~~~-~---------~L---~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 251 TSALVTMSIDNAS-A---------PL---IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCceEEEEecCCc-c---------ce---EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 6677665443321 1 00 022334568899999999999999998775433222235678899999997
Q ss_pred CC
Q 043890 450 RP 451 (509)
Q Consensus 450 ~~ 451 (509)
..
T Consensus 318 r~ 319 (568)
T PTZ00420 318 QI 319 (568)
T ss_pred cc
Confidence 64
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=223.63 Aligned_cols=302 Identities=14% Similarity=0.201 Sum_probs=198.7
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcc--cCCCCcccCCCCccCCccccCCCCCcc
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKA--VGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
|.+.|.+|.| ++||+|||+|+.||.|+||.+...+...........+.+ ...+.+....... -...++..
T Consensus 266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~----~~~~~~~s-- 337 (712)
T KOG0283|consen 266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE----EKISSRTS-- 337 (712)
T ss_pred cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc----cccccccc--
Confidence 3499999999 999999999999999999999874432222111111111 0011100000000 00000000
Q ss_pred eecCCC-CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPP-GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
.... .....+.+. .........+.+.| .+|.+.|.+|.|+.++ +|+++ -|.+|++|++....++
T Consensus 338 --~~~~~~~s~~~~~p---~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL------- 403 (712)
T KOG0283|consen 338 --SSRKGSQSPCVLLP---LKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL------- 403 (712)
T ss_pred --ccccccCCccccCC---Cccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCCCccee-------
Confidence 0000 000011111 11111123344444 8999999999999765 66666 8999999999976654
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
....|...|+|++|+|-+.++|++|+-|+.|+||++...++ +.-.+.+ .-|++++|.|||+
T Consensus 404 --~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V----v~W~Dl~-------------~lITAvcy~PdGk 464 (712)
T KOG0283|consen 404 --KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV----VDWNDLR-------------DLITAVCYSPDGK 464 (712)
T ss_pred --eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCee----Eeehhhh-------------hhheeEEeccCCc
Confidence 34569999999999998779999999999999999998774 1222222 4799999999999
Q ss_pred EEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCCce
Q 043890 352 HILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 352 ~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+.+.|+. |.+++|+... .+.......+..... +..-.+|+.+.|.|.. ..|++.+.|..|+|||.++..+
T Consensus 465 ~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~K-------k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l 536 (712)
T KOG0283|consen 465 GAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKK-------KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL 536 (712)
T ss_pred eEEEEEeccEEEEEEccC-CeEEEeeeEeeccCc-------cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence 9999985 9999999985 555544433222111 0111135588888643 3577788999999999988888
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+. .|++.... ..=....|+.||++++++++ ..+|||+
T Consensus 537 v~-KfKG~~n~-----------------------------------------~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 537 VH-KFKGFRNT-----------------------------------------SSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred hh-hhcccccC-----------------------------------------CcceeeeEccCCCEEEEeecCceEEEEe
Confidence 87 77765411 12256788889999999998 7999997
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=206.89 Aligned_cols=265 Identities=15% Similarity=0.178 Sum_probs=205.5
Q ss_pred CCcceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcc
Q 043890 16 PPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEF 95 (509)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (509)
.....-|....--..+....+.+|..+|.-+.||||.++|++++.+-.+++||+.++..
T Consensus 245 D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--------------------- 303 (519)
T KOG0293|consen 245 DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--------------------- 303 (519)
T ss_pred CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh---------------------
Confidence 34445566654433445566788999999999999999999999999999999999987
Q ss_pred eEEeeec-cCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCccc
Q 043890 96 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVAS 174 (509)
Q Consensus 96 ~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (509)
...+. +|. ..+.+.+| .|||..+++|+.|+.+..||++......
T Consensus 304 --~~~y~~~~~------------~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDgn~~~~------------------- 348 (519)
T KOG0293|consen 304 --RHLYPSGLG------------FSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDGNILGN------------------- 348 (519)
T ss_pred --hhhcccCcC------------CCcceeEE--ccCCceeEecCCCCcEEEecCCcchhhc-------------------
Confidence 22221 222 56999999 8999999999999999999998654211
Q ss_pred CCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeE
Q 043890 175 SSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRI 253 (509)
Q Consensus 175 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i 253 (509)
|. .-....|.+++..+||+++++. .|..|
T Consensus 349 ---------------------------------W~-----------------gvr~~~v~dlait~Dgk~vl~v~~d~~i 378 (519)
T KOG0293|consen 349 ---------------------------------WE-----------------GVRDPKVHDLAITYDGKYVLLVTVDKKI 378 (519)
T ss_pred ---------------------------------cc-----------------ccccceeEEEEEcCCCcEEEEEecccce
Confidence 11 1112458899999999999888 99999
Q ss_pred EEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccc
Q 043890 254 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSF 333 (509)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (509)
++++.++.... .+-....+|+++..+.++ +++++.-.+..+++||+...++ ++.+.++...
T Consensus 379 ~l~~~e~~~dr---------~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq~----- 439 (519)
T KOG0293|consen 379 RLYNREARVDR---------GLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQG----- 439 (519)
T ss_pred eeechhhhhhh---------ccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhccccc-----
Confidence 99998864422 123346789999999998 9999999999999999997665 4555555421
Q ss_pred cccccccEEEEEEec-CCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEE
Q 043890 334 FTEIIASISDIKFAK-DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRV 410 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 410 (509)
.-+-.-+|-- +..++++|+ |+.|+||+..+ ++++..+.+|...+. +++|+|.. ..+
T Consensus 440 -----~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vN---------------cVswNP~~p~m~ 498 (519)
T KOG0293|consen 440 -----HFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVN---------------CVSWNPADPEMF 498 (519)
T ss_pred -----ceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceee---------------EEecCCCCHHHh
Confidence 2334445544 558999997 59999999997 899999999987755 99999954 578
Q ss_pred EEeeCCCcEEEEeCCC
Q 043890 411 ATGSYSNLFRVFGCAP 426 (509)
Q Consensus 411 ~~~~~dg~i~iw~~~~ 426 (509)
|+|++||+|+||....
T Consensus 499 ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSD 514 (519)
T ss_pred hccCCCCeEEEecCCc
Confidence 9999999999998763
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.3e-27 Score=204.86 Aligned_cols=271 Identities=14% Similarity=0.242 Sum_probs=204.5
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee-ccCCcchhhccchh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~ 115 (509)
..|.-+|.||+++|++++.++++.+|+|.-|++.+++.....+..- .+....+.| ...- ++|.
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~~~~~----~k~~r~~h~---------- 202 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKSHGNP----LKESRKGHV---------- 202 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhhccCC----CCccccccc----------
Confidence 4599999999999999999999999999999999887521111110 000000111 0111 2555
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.+++. ++||+||++|+.|..|.||+.++.+.++.
T Consensus 203 --keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~--------------------------------------- 239 (479)
T KOG0299|consen 203 --KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV--------------------------------------- 239 (479)
T ss_pred --ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc---------------------------------------
Confidence 77999999 99999999999999999999998865443
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|.+.|.+++|-.....|+++ .|+.|++|+++..... .+
T Consensus 240 ------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v--------et 281 (479)
T KOG0299|consen 240 ------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV--------ET 281 (479)
T ss_pred ------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH--------HH
Confidence 37899999999998776677777 9999999999865543 36
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+.+|...|.+|....-+ +.+-+|+.|+++++|++..... .+|.. +.+.+.|++|-. ...++
T Consensus 282 lyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lifrg------------~~~sidcv~~In-~~Hfv 342 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIFRG------------GEGSIDCVAFIN-DEHFV 342 (479)
T ss_pred HhCCccceeeechhccc-ceEEeccccceeEEEeccccce-----eeeeC------------CCCCeeeEEEec-cccee
Confidence 88999999999998887 7788888999999999955431 23333 347899999975 45677
Q ss_pred EecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 355 SRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 355 s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
+|+| |.|.+|++.. .+++.+.....+..+....+..+ +.|++++..|...++|+|+.+|.|++|.+.++
T Consensus 343 sGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 7765 9999999996 67877766543333322111111 34668999999999999999999999999987
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.9e-29 Score=199.11 Aligned_cols=247 Identities=15% Similarity=0.242 Sum_probs=204.4
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
+...+|.+.|...+++.+....|+++.|-+-+|||.-++.. +.+
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde------------------------------------lhs 96 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------------------------------------LHS 96 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh------------------------------------hhh
Confidence 45567999999999999999999999999999999988876 445
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
++|..-|.+++| +.|.++|++|+.++.++|||++..+....
T Consensus 97 f~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~------------------------------------- 137 (334)
T KOG0278|consen 97 FEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPK------------------------------------- 137 (334)
T ss_pred hhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCch-------------------------------------
Confidence 555577999999 99999999999999999999986542111
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
. +.+|.+.|+.+.|....+.++++ +|+.||+||.+++....++
T Consensus 138 ------------------------------E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL----- 181 (334)
T KOG0278|consen 138 ------------------------------E-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL----- 181 (334)
T ss_pred ------------------------------h-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-----
Confidence 0 27899999999998888888887 9999999999998865443
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
....+|+++.++++| .+| +-...+.|.+||..+-.+ ++.++.+ ..|.+..++|+...
T Consensus 182 ----~~~s~VtSlEvs~dG-~il-Tia~gssV~Fwdaksf~~----lKs~k~P-------------~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 182 ----EFNSPVTSLEVSQDG-RIL-TIAYGSSVKFWDAKSFGL----LKSYKMP-------------CNVESASLHPKKEF 238 (334)
T ss_pred ----ecCCCCcceeeccCC-CEE-EEecCceeEEeccccccc----eeeccCc-------------cccccccccCCCce
Confidence 246789999999998 544 445667899999998765 4555544 47899999999988
Q ss_pred EEEec-CCeEEEEECCCCCCceEEE-eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATF-QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
+++|+ |..++.||+.+ +..+..+ ++|.+++. ++.|+|||...++|++||+|+||.+..++..
T Consensus 239 fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVh---------------cVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVH---------------CVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEecCcceEEEEEeccC-CceeeecccCCCCceE---------------EEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 88876 59999999998 5666665 77877755 9999999999999999999999999876644
No 82
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=7.2e-27 Score=239.97 Aligned_cols=255 Identities=14% Similarity=0.227 Sum_probs=191.7
Q ss_pred ecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+...|.+++|+|. +.+||+++.||.|+|||+.+++. ...+.+|.
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-----------------------~~~~~~H~----------- 575 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----------------------VTEMKEHE----------- 575 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-----------------------EEEecCCC-----------
Confidence 34578999999874 78999999999999999987766 67788888
Q ss_pred hccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 117 EEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 117 ~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.|++++| +| ++.+|++|+.||.|++||+.++.....
T Consensus 576 -~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--------------------------------------- 613 (793)
T PLN00181 576 -KRVWSIDY--SSADPTLLASGSDDGSVKLWSINQGVSIGT--------------------------------------- 613 (793)
T ss_pred -CCEEEEEE--cCCCCCEEEEEcCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 78999999 75 788999999999999999986542211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEEC-CCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
+. +...+.++.|+ +++.+|++| .||.|++||++..+... .
T Consensus 614 ------------------------------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~-------~ 655 (793)
T PLN00181 614 ------------------------------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL-------C 655 (793)
T ss_pred ------------------------------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccc-------e
Confidence 12 22458889994 578999999 99999999998755322 2
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcc--cCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSAL--CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.+.+|...|.++.|. ++ .+|++++.|+.|++||++.... ....++. +.+|...+..++|+|++.
T Consensus 656 ~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------------~~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 656 TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHS------------FMGHTNVKNFVGLSVSDG 721 (793)
T ss_pred EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEE------------EcCCCCCeeEEEEcCCCC
Confidence 456899999999997 44 7899999999999999986421 0111233 344557899999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecc-cccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHE-YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
+|++|+ |+.|++|+... ..++..+.... ....... ....-..|.+++|+|++..|++|+.||.|+||++
T Consensus 722 ~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 722 YIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999986 59999999875 34443332211 1110000 0011112459999999999999999999999996
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-27 Score=195.22 Aligned_cols=290 Identities=19% Similarity=0.258 Sum_probs=214.0
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
..++.||.+.|..++-.....++.+++.|.+.+||.++++.+ +..+.||.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----------------------L~~Y~GH~------- 190 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-----------------------LATYTGHT------- 190 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-----------------------eeeecccc-------
Confidence 345678999999999988889999999999999999999999 88999999
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
+.|++|+| ++.+.++++++.|++-.||...-.-.... +..+...+.+...-.
T Consensus 191 -----GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~---~~a~~~hSsEeE~e~------------------ 242 (481)
T KOG0300|consen 191 -----GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPS---NNAPSDHSSEEEEEH------------------ 242 (481)
T ss_pred -----cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCC---CCCCCCCCchhhhhc------------------
Confidence 89999999 88999999999999999998432110000 000000000000000
Q ss_pred ceecCCCCCCCccccccc-cccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 193 KEFSFPPGGIPSLRLPTV-TSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
.+...+.-|- ...+...+..+... +.+|...|.+..|-..|+.++++ -|.+..+||+++++..
T Consensus 243 --------sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v------ 307 (481)
T KOG0300|consen 243 --------SDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV------ 307 (481)
T ss_pred --------ccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCcee------
Confidence 0000000000 00111111222333 38899999999999999999999 8999999999998754
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
..+.+|....+.++-+|.. +++++++.|.+.++||.+..- ..+.. +.+|...|+++.|..+.
T Consensus 308 --~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI---~sV~V------------FQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 308 --NILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI---QSVAV------------FQGHTDTVTSVVFNTDD 369 (481)
T ss_pred --ccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc---ceeee------------ecccccceeEEEEecCC
Confidence 3688999999999999998 999999999999999999432 12334 45556899999999866
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+ +++|+ |.+|+|||+++...++.++...... ..++.+..+..++.--.+..|++||++ |..
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDln-G~R 431 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLN-GNR 431 (481)
T ss_pred c-eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecC-CCc
Confidence 5 56665 5999999999877888888765432 278888888899988999999999998 444
Q ss_pred ee
Q 043890 430 EA 431 (509)
Q Consensus 430 ~~ 431 (509)
+.
T Consensus 432 la 433 (481)
T KOG0300|consen 432 LA 433 (481)
T ss_pred cc
Confidence 44
No 84
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1e-26 Score=212.37 Aligned_cols=419 Identities=15% Similarity=0.164 Sum_probs=282.2
Q ss_pred CcceecccceEEEEECCCC---CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceE----------Eee
Q 043890 34 GEEVQEVDIISAIEFDKTG---DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRY----------KTE 100 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~---~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 100 (509)
.++-||.+.|.+++|...+ -+||+++.|..||||.+.-........++... ..++--|.... -..
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~--t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL--TTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc--ccccCCceeeeeeeEEEEEehhhh
Confidence 4556899999999999764 48999999999999998654421111110000 00000111111 123
Q ss_pred eccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCcc
Q 043890 101 FQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVS 180 (509)
Q Consensus 101 ~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (509)
+.||+ +.|+++.| +|.+..|++++.|.++.+|...+..-+....... |.+-..+..+.
T Consensus 263 l~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl--------Ge~gg~a~GF~ 320 (764)
T KOG1063|consen 263 LMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL--------GEVGGSAGGFW 320 (764)
T ss_pred hcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEe--------eccccccccee
Confidence 34666 89999999 9999999999999999999987654333222111 11112333455
Q ss_pred CCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEcc
Q 043890 181 PKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 259 (509)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~ 259 (509)
...|+++++ ..++.+..+..++|. +.+.. .-.......+|...|++++|+|.|.+|++. .|.+-|+|-.-
T Consensus 321 g~lw~~n~~-----~ii~~g~~Gg~hlWk--t~d~~--~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 321 GGLWSPNSN-----VIIAHGRTGGFHLWK--TKDKT--FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred eEEEcCCCC-----EEEEecccCcEEEEe--ccCcc--ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 667777774 346677778888887 21111 111122358999999999999999999998 89999998654
Q ss_pred CCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCc--------------------------
Q 043890 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSA-------------------------- 313 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------------------- 313 (509)
..+... . +..+.+-|...++|+++-+.. ..|++|..+..+|+|+....-
T Consensus 392 g~q~~w--H--EiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vpa 466 (764)
T KOG1063|consen 392 GRQQEW--H--EIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPA 466 (764)
T ss_pred ccccce--e--eecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccc
Confidence 222211 1 113456688899999999964 789999999999999876320
Q ss_pred --ccCCceee------------eccc--------------------cCCCCccccccccccEEEEEEecCCCEEEEec--
Q 043890 314 --LCDSHAIL------------FEEQ--------------------EAPGSRSFFTEIIASISDIKFAKDGRHILSRD-- 357 (509)
Q Consensus 314 --~~~~~~~~------------~~~~--------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-- 357 (509)
+..++... .+.. ...+....+.+|...|.+++.+|+|+++|++.
T Consensus 467 LGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS 546 (764)
T KOG1063|consen 467 LGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKS 546 (764)
T ss_pred ccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhh
Confidence 00000000 0000 00011123568999999999999999999962
Q ss_pred ---C-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee--
Q 043890 358 ---Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA-- 431 (509)
Q Consensus 358 ---~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-- 431 (509)
. ..|++|+..+ ....+.+.+|.-.++ .++|||||++|++.+.|.++.+|.........
T Consensus 547 ~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT---------------~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTAN-WLQVQELEGHSLTVT---------------RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred CCccceEEEEEeccc-hhhhheecccceEEE---------------EEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 2 6799999996 677778999987765 89999999999999999999999986433222
Q ss_pred -eeeccCCCceeEEEEcCCCCCCc---ccceeeEeecCCC--CCcccCCCcccccccceEEEEEcCCC-----cEEEEEe
Q 043890 432 -TTLEASKNPMRRQVQTPSRPSRS---LSSITRVVRRGSD--VPGVDTNGNSFDFTTKLLHLAWHPTE-----NSIACAA 500 (509)
Q Consensus 432 -~~~~~~~~~v~~~~~s~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~p~~-----~~la~~~ 500 (509)
..++.|+..|+...|+|++.... -+..+.+|..... .+..+. ..+.|...|+.++|.|-. ..+++|-
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF--ACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--chhccCCceeeEEeeccccccccceEEEEe
Confidence 24789999999999999988632 2244566654333 111111 344678899999998853 2667777
Q ss_pred c-CceEEEe
Q 043890 501 A-NSLYMYY 508 (509)
Q Consensus 501 ~-~~i~v~~ 508 (509)
. +.|+||.
T Consensus 689 e~GeI~l~~ 697 (764)
T KOG1063|consen 689 EKGEIVLWR 697 (764)
T ss_pred cccEEEEEe
Confidence 7 8999986
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.8e-26 Score=188.69 Aligned_cols=277 Identities=15% Similarity=0.201 Sum_probs=207.6
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
.+.|++|.|+|.+..|++++.||.+++|+....+. ...+ .|. .+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------------------~~~~-~~~------------~p 56 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------------------KLKF-KHG------------AP 56 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------------------hhhe-ecC------------Cc
Confidence 58899999999999999999999999999987754 1222 222 67
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
+.+.+| . +...+++|+.||.|+.+|++++....
T Consensus 57 lL~c~F--~-d~~~~~~G~~dg~vr~~Dln~~~~~~-------------------------------------------- 89 (323)
T KOG1036|consen 57 LLDCAF--A-DESTIVTGGLDGQVRRYDLNTGNEDQ-------------------------------------------- 89 (323)
T ss_pred eeeeec--c-CCceEEEeccCceEEEEEecCCccee--------------------------------------------
Confidence 999999 4 45689999999999999999875322
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+..|..+++|+...+....+++| -|+.|++||.+...... .+ ..
T Consensus 90 --------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--------~~-d~ 134 (323)
T KOG1036|consen 90 --------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--------TF-DQ 134 (323)
T ss_pred --------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc--------cc-cc
Confidence 36789999999999988888888 89999999999633221 12 22
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD- 357 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~- 357 (509)
...|.++.... +.|++|+.+..+.+||+++.... +...+ ..-.-.+.++++-|++.-.++++
T Consensus 135 ~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~------~q~re--------S~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 135 GKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEP------FQRRE--------SSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred CceEEEEeccC---CEEEEeecCceEEEEEcccccch------hhhcc--------ccceeEEEEEEEecCCCceEEEee
Confidence 34787777653 67999999999999999987631 11100 01124789999999877666654
Q ss_pred CCeEEEEECCCC---CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 358 YMTLKLWDINMD---SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 358 ~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
+|.|.+=.+... ......|+.|..... ..+.+++|.+++|+|-...||||+.||.|.+||+.+.+.+. .+
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-q~ 270 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-QL 270 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh-hc
Confidence 798887666541 133455667754322 22456677899999999999999999999999999887765 22
Q ss_pred ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 435 EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
.. ++..|..++|+.+|..||+++.
T Consensus 271 ~~-------------------------------------------~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 271 AK-------------------------------------------YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cC-------------------------------------------CCCceEEEEeccCCCeEEEEec
Confidence 21 2466889999999999998875
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.2e-27 Score=199.44 Aligned_cols=274 Identities=16% Similarity=0.233 Sum_probs=198.9
Q ss_pred cceecccceEEEEECCC---CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 35 EEVQEVDIISAIEFDKT---GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~---~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
...||.++|.+++|.-. ...+++++.|.++++|..+.++...+ ....-+||+
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-------------------~~~~~~GHk------ 193 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-------------------ALKVCRGHK------ 193 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh-------------------HHhHhcccc------
Confidence 34679999998888643 34699999999999999987765111 122334887
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..|.++.. .++|.++++|+.|.+|+||+................ .++
T Consensus 194 ------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r-----rk~-------------------- 240 (423)
T KOG0313|consen 194 ------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR-----RKK-------------------- 240 (423)
T ss_pred ------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhh-----hhh--------------------
Confidence 88999999 899999999999999999994332211110000000 000
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
-...+......++ +.+.+|..+|.++.|++ ...+.++ -|.+|+.||+.+++...++
T Consensus 241 ------------------~~~~~~~~~r~P~-vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--- 297 (423)
T KOG0313|consen 241 ------------------QKREKEGGTRTPL-VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--- 297 (423)
T ss_pred ------------------hhhhhcccccCce-EEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---
Confidence 0000000001111 23589999999999998 5566666 8999999999998765432
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.....+.++.++|.. ++|++|+.|..|++||.+++.- .. . ...+.+|.+.|.++.|+|..
T Consensus 298 ------~~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-----s~-v-------~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 298 ------TTNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG-----SV-V-------SQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred ------ecCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-----ce-e-------EEeeecchhhhhheecCCCC
Confidence 235688999999987 9999999999999999998852 11 1 12366777999999999977
Q ss_pred CEE-EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 351 RHI-LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 351 ~~l-~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
.++ ++++ |+++++||+++...++..+.+|...+ +++.|. ++.++++|+.|++|+|+.-.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv---------------l~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV---------------LSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCCCcceeeccCCceE---------------EEEecc-CCceEEeccCcceEEEeccc
Confidence 755 4566 69999999998666999999997654 389995 56789999999999998743
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=219.09 Aligned_cols=254 Identities=14% Similarity=0.240 Sum_probs=208.1
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|...+.+..|+ ..++++++.++.|.+|+..++.. ....+.||. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence 56788899998 66899999999999999998876 234499999 8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.++++ ..-+.+|++|+.|.++++||..++.+...
T Consensus 251 ~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~sg~C~~~------------------------------------------ 286 (537)
T KOG0274|consen 251 GVWGLAF--PSGGDKLVSGSTDKTERVWDCSTGECTHS------------------------------------------ 286 (537)
T ss_pred CceeEEE--ecCCCEEEEEecCCcEEeEecCCCcEEEE------------------------------------------
Confidence 8999999 54577999999999999999998875543
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+.+|...+.++...+ .++++| .|.+|++|+++++..+. .+.+
T Consensus 287 ---------------------------l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~--------l~~~ 329 (537)
T KOG0274|consen 287 ---------------------------LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN--------LLRG 329 (537)
T ss_pred ---------------------------ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE--------Eecc
Confidence 378888898888644 567777 89999999999776542 4556
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
|..+|.++..+ + .++++|+.|++|++||+.+++. ++.+.+ |...|.++.+.+. ..+++|+
T Consensus 330 h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~c----l~sl~g------------H~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 330 HTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKC----LKSLSG------------HTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred ccccEEEEEec--C-CEEEEEecCceEEEEEhhhcee----eeeecC------------CcceEEEEEecCc-ceEEeee
Confidence 99999999998 4 7999999999999999998774 455554 4589999988765 7888886
Q ss_pred -CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 358 -YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 358 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
|+.|++||+++..+++..+.+|...+. . ....+++|++++.|++|++||..+++++. ++++
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~---------------~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~-~~~~ 451 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLVS---------------S--LLLRDNFLVSSSADGTIKLWDAEEGECLR-TLEG 451 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCccccc---------------c--cccccceeEeccccccEEEeecccCceee-eecc
Confidence 699999999973288999999887643 3 33467899999999999999999999998 8888
Q ss_pred -CCCceeEEEEc
Q 043890 437 -SKNPMRRQVQT 447 (509)
Q Consensus 437 -~~~~v~~~~~s 447 (509)
|.+.+..+++.
T Consensus 452 ~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 452 RHVGGVSALALG 463 (537)
T ss_pred CCcccEEEeecC
Confidence 56666666554
No 88
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.5e-26 Score=188.05 Aligned_cols=297 Identities=16% Similarity=0.239 Sum_probs=205.7
Q ss_pred ecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.|.+.|+++...+. |+|+++|+.||.|.|||+++...- +.... +.-+....-...-.+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-------e~s~l-i~k~~c~v~~~h~~~Hk----------- 101 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-------EASGL-IAKHKCIVAKQHENGHK----------- 101 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccch-------hhccc-eeheeeeccccCCccce-----------
Confidence 49999999999985 899999999999999999876520 00000 00000000011223444
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
-.|.++.|.|. |...+.+++.|.+++|||.++.+..-.
T Consensus 102 -y~iss~~WyP~-DtGmFtssSFDhtlKVWDtnTlQ~a~~---------------------------------------- 139 (397)
T KOG4283|consen 102 -YAISSAIWYPI-DTGMFTSSSFDHTLKVWDTNTLQEAVD---------------------------------------- 139 (397)
T ss_pred -eeeeeeEEeee-cCceeecccccceEEEeecccceeeEE----------------------------------------
Confidence 77999999654 444888999999999999987653222
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC---CCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..-++.|.+-+++|- ..++|+| .+-.|++.|+.++...
T Consensus 140 ------------------------------F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-------- 181 (397)
T KOG4283|consen 140 ------------------------------FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-------- 181 (397)
T ss_pred ------------------------------eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce--------
Confidence 112234666667663 3467788 8999999999988754
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC--CCccccccccccEEEEEEecCC
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP--GSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
..+.+|...|.++.|+|....+|++|+.||.|++||++...-| ...++.++.. .....-..|.+.++.++|+.++
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccc
Confidence 3689999999999999998788999999999999999976543 5666665521 2222456788999999999999
Q ss_pred CEEEEe-cCCeEEEEECCCCCCceEEEee--cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 351 RHILSR-DYMTLKLWDINMDSGPVATFQV--HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 351 ~~l~s~-~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
.+++++ .|..+++|+..++...+..+-. |... .-..+.+. +-+...++.--.++.+.++++-+|
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~------------~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg 325 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT------------TSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG 325 (397)
T ss_pred hhhhhccCccceEEeecccCccccccccccccccc------------ccceEEEe-ecccceEEEEecCCeEEEEEccCc
Confidence 999986 5799999999874333332211 1111 10000122 234444444556689999999999
Q ss_pred ceeeeeeccCCCceeEEEEcCCC
Q 043890 428 STEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
..+. .+..|...+.+.++.|+-
T Consensus 326 s~ir-~l~~h~k~i~c~~~~~~f 347 (397)
T KOG4283|consen 326 SFVR-RLSTHLKRINCAAYRPDF 347 (397)
T ss_pred eEEE-eeecccceeeEEeecCch
Confidence 9998 888887666666666543
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2e-26 Score=199.17 Aligned_cols=247 Identities=17% Similarity=0.253 Sum_probs=201.4
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.||...|+.+.|+|+...+++++.|-.|+||....... ......|+
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------------~~~~~~h~--------- 303 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------------PTSSRPHE--------- 303 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------------cccccccc---------
Confidence 3467999999999999999999999999999999887665 46667777
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
++|+.+.. .|.|+||++++.||+..+.|++++.......
T Consensus 304 ---~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------------------------------------ 342 (506)
T KOG0289|consen 304 ---EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVS------------------------------------ 342 (506)
T ss_pred ---ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEe------------------------------------
Confidence 88999999 9999999999999999999999886443211
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
-....-.+++.+|+|||.+|.+| .||.|++||+..+... .
T Consensus 343 -------------------------------~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~--------a 383 (506)
T KOG0289|consen 343 -------------------------------DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV--------A 383 (506)
T ss_pred -------------------------------eccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc--------c
Confidence 01223458899999999999999 9999999999987643 4
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+.+|.++|..++|+.+| .+|+++..|+.|++||+|..+. .+++...+ ..++.++.|.+.|.+|
T Consensus 384 ~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l~~-----------~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQLDE-----------KKEVNSLSFDQSGTYL 447 (506)
T ss_pred cCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeeccc-----------cccceeEEEcCCCCeE
Confidence 789999999999999999 9999999999999999998764 44554332 1369999999999999
Q ss_pred EEec-CCeEEEEECCC-CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 354 LSRD-YMTLKLWDINM-DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
+.++ +=+|++++-.+ ....+..+..|.+..+ .+.|....+++++++.|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st---------------~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLST---------------GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccc---------------eeeecccceEEeeccchhheEEeec
Confidence 9975 35555555332 2455666666765544 7899999999999999999998864
No 90
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=8.9e-26 Score=214.16 Aligned_cols=218 Identities=13% Similarity=0.162 Sum_probs=164.2
Q ss_pred ceecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 36 EVQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
+.+|.+.|.+++|+| ++++||+|+.|+.|++||+.+..... . ....+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-~---------------~~~~l~~L~gH~--------- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-N---------------ISDPIVHLQGHT--------- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-c---------------cCcceEEecCCC---------
Confidence 467999999999999 88999999999999999997653200 0 001246778888
Q ss_pred hhhccceeeEEEEcCCC-ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.+++| +|++ ++|++++.|+.|+|||+.+++....
T Consensus 126 ---~~V~~l~f--~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~------------------------------------- 163 (493)
T PTZ00421 126 ---KKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGKAVEV------------------------------------- 163 (493)
T ss_pred ---CcEEEEEe--CcCCCCEEEEEeCCCEEEEEECCCCeEEEE-------------------------------------
Confidence 78999999 8875 6899999999999999987642211
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
+.+|...|.+++|+|++.+|+++ .|+.|++||+++++...
T Consensus 164 --------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~------- 204 (493)
T PTZ00421 164 --------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS------- 204 (493)
T ss_pred --------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE-------
Confidence 36788889999999999999999 99999999999876543
Q ss_pred CccCCCccc-eEEEEEeCCCCcEEEEEE----cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 273 ANMEDLTEV-ITSAEFHPTHCNMLAYSS----SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 273 ~~~~~~~~~-i~~l~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+..|... +..+.|.+++ ..+++++ .|+.|++||+++... +......+ +...+....|+
T Consensus 205 -tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~~d-----------~~~~~~~~~~d 268 (493)
T PTZ00421 205 -SVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVDLD-----------QSSALFIPFFD 268 (493)
T ss_pred -EEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCC---ceeEeccC-----------CCCceEEEEEc
Confidence 34556543 4567888887 5666544 479999999987542 12222211 11356667899
Q ss_pred cCCCEEEEec--CCeEEEEECCCCCCceEEE
Q 043890 348 KDGRHILSRD--YMTLKLWDINMDSGPVATF 376 (509)
Q Consensus 348 ~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~ 376 (509)
+++.+|++++ |+.|++||+.. +.++...
T Consensus 269 ~d~~~L~lggkgDg~Iriwdl~~-~~~~~~~ 298 (493)
T PTZ00421 269 EDTNLLYIGSKGEGNIRCFELMN-ERLTFCS 298 (493)
T ss_pred CCCCEEEEEEeCCCeEEEEEeeC-CceEEEe
Confidence 9999888763 79999999996 5555544
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-26 Score=188.26 Aligned_cols=251 Identities=19% Similarity=0.304 Sum_probs=192.0
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT 99 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (509)
-.|.+.+.| ....|.++|++|+. ++.++|+|+.|-+|+|||+..... ..
T Consensus 29 ~~~~l~~lF------~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----------------------lg 77 (362)
T KOG0294|consen 29 VKPTLKPLF------AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----------------------LG 77 (362)
T ss_pred cceeeeccc------cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----------------------hc
Confidence 456666666 23459999999996 489999999999999999998877 56
Q ss_pred eeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 100 EFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 100 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
.+-.|. +.|+++.|.+......|++|+.||.|.+|+...-.+..
T Consensus 78 ~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~------------------------ 121 (362)
T KOG0294|consen 78 ILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK------------------------ 121 (362)
T ss_pred ceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee------------------------
Confidence 777787 88999999422233489999999999999987543222
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEc
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 258 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~ 258 (509)
. +.+|...|+.++.+|.+++.++. .|+.+++||+
T Consensus 122 --------------------------------------------s-lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 122 --------------------------------------------S-LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred --------------------------------------------e-ecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence 1 48899999999999999987776 9999999999
Q ss_pred cCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc
Q 043890 259 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
-+++..+.+ .+ ....+.+.|+|.| .+|+.++.+ .|-+|.+.+..+. ..+..+
T Consensus 157 V~Gr~a~v~------~L---~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~~------------- 208 (362)
T KOG0294|consen 157 VRGRVAFVL------NL---KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIENP------------- 208 (362)
T ss_pred hcCccceee------cc---CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhcc-------------
Confidence 988755432 22 2223449999999 777777665 5999999887642 222211
Q ss_pred ccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEE--EcCCCCEEEEeeC
Q 043890 339 ASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC--LSGDGLRVATGSY 415 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~ 415 (509)
..+.++.|.. +..|++| +++.|.+||... ..+...+.+|...+. ++. -.|++.+|+|++.
T Consensus 209 ~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 209 KRILCATFLD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASS 271 (362)
T ss_pred ccceeeeecC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEecc
Confidence 2467777765 4555555 569999999996 788999999987765 444 3577899999999
Q ss_pred CCcEEEEeCCCC
Q 043890 416 SNLFRVFGCAPG 427 (509)
Q Consensus 416 dg~i~iw~~~~~ 427 (509)
||.|++||++..
T Consensus 272 DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGFIKVWDIDME 283 (362)
T ss_pred CceEEEEEcccc
Confidence 999999999865
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=185.14 Aligned_cols=310 Identities=15% Similarity=0.214 Sum_probs=210.7
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
...+.+|.+.|++++|+.||++||+++.|+.|+||++.+-.. +.|.- ++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~---------------------------~eHr~----~R 127 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN---------------------------KEHRC----IR 127 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh---------------------------hhhhH----hh
Confidence 345678999999999999999999999999999999986543 11110 00
Q ss_pred -chhhhccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 113 -SLEIEEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 113 -~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
.++. +.-+.+.| .||-+-++.... ..++++|.+...+--
T Consensus 128 ~nve~-dhpT~V~F--apDc~s~vv~~~~g~~l~vyk~~K~~dG------------------------------------ 168 (420)
T KOG2096|consen 128 QNVEY-DHPTRVVF--APDCKSVVVSVKRGNKLCVYKLVKKTDG------------------------------------ 168 (420)
T ss_pred ccccC-CCceEEEE--CCCcceEEEEEccCCEEEEEEeeecccC------------------------------------
Confidence 0000 34678899 888887766554 458999987654310
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
+......-||-. .|-..|...+..+-...++.+++++ .|..|.+|+++ ++.+.
T Consensus 169 ---------~~~~~~v~~D~~------------~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~---- 222 (420)
T KOG2096|consen 169 ---------SGSHHFVHIDNL------------EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ---- 222 (420)
T ss_pred ---------CCCccccccccc------------ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee----
Confidence 000001111100 0125577777778888889999999 89999999999 44332
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
.+......-+..+.+|+| +++++++..--|++|.+--++- -+|+. ....-.+.+|.+.|..++|+++
T Consensus 223 ----~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kd-----G~fqe---v~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 223 ----SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKD-----GTFQE---VKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred ----eeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccC-----cchhh---hhhhheeccchhheeeeeeCCC
Confidence 334444555678899999 9999999999999998643321 11111 0112346788899999999999
Q ss_pred CCEEEEec-CCeEEEEECCCC------CCceEEEe--ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEE
Q 043890 350 GRHILSRD-YMTLKLWDINMD------SGPVATFQ--VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 420 (509)
Q Consensus 350 ~~~l~s~~-~~~i~iwd~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 420 (509)
.+.+++.+ ||+++|||..-. .+.++... .|.... +.+ .+..+|.|+.||.+ ....++
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~---------~p~----RL~lsP~g~~lA~s-~gs~l~ 355 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS---------EPV----RLELSPSGDSLAVS-FGSDLK 355 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC---------Cce----EEEeCCCCcEEEee-cCCceE
Confidence 99999986 699999998631 11111111 111110 111 78999999998854 455899
Q ss_pred EEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe
Q 043890 421 VFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA 500 (509)
Q Consensus 421 iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 500 (509)
+|..++|+... .++. -|...|.+++|+|+|+++|+++
T Consensus 356 ~~~se~g~~~~-~~e~------------------------------------------~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 356 VFASEDGKDYP-ELED------------------------------------------IHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred EEEcccCccch-hHHH------------------------------------------hhcCceeeEEecCCCcEEeeec
Confidence 99988887655 2221 1346799999999999999999
Q ss_pred cCceEEEe
Q 043890 501 ANSLYMYY 508 (509)
Q Consensus 501 ~~~i~v~~ 508 (509)
+..++|+.
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 98888763
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.7e-26 Score=199.89 Aligned_cols=268 Identities=16% Similarity=0.280 Sum_probs=193.7
Q ss_pred eecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 37 VQEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.|.+.|+.+.+-|+ ..++|+++..+.|.|||..+.....+.. .+.+.-..+.+|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------~~~~Pdl~L~gH~---------- 177 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------GECRPDLRLKGHE---------- 177 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------ccCCCceEEEeec----------
Confidence 459999999999997 4788889999999999998654311100 0122245778887
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.=.+|.|.+. ..-+|++++.|+.|++||+........
T Consensus 178 --~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~--------------------------------------- 215 (422)
T KOG0264|consen 178 --KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDK--------------------------------------- 215 (422)
T ss_pred --ccccccccccc-cceeEeeccCCCcEEEEeccccccCCc---------------------------------------
Confidence 44677999422 233899999999999999986532100
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
...+ +..+.+|...|..++|++.. .+|+++ +|+.+.|||+|+.... ...
T Consensus 216 ----------------------~~~p-~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------~~~ 266 (422)
T KOG0264|consen 216 ----------------------VVDP-KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------PSH 266 (422)
T ss_pred ----------------------cccc-eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC------Ccc
Confidence 0011 12348999999999999865 456666 9999999999963111 113
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-E
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-H 352 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~ 352 (509)
...+|...|.+++|+|-+..+||+|+.|++|.+||+|+-.. ++++++.| ...|..+.|+|+.. .
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H------------~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGH------------EDEVFQVEWSPHNETV 331 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCC------------CcceEEEEeCCCCCce
Confidence 66789999999999998889999999999999999998653 35555554 48999999999765 5
Q ss_pred EEEe-cCCeEEEEECCCCCC----------ceEEEeecccccccccccccCCCccceeeEEEcCCCCE-EEEeeCCCcEE
Q 043890 353 ILSR-DYMTLKLWDINMDSG----------PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR-VATGSYSNLFR 420 (509)
Q Consensus 353 l~s~-~~~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~ 420 (509)
|+++ .|+.+.|||+..-+. +...+..|.+...+ |..+.|+|+..+ |++.++|+.+.
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k------------V~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK------------VSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc------------cccccCCCCCCeEEEEecCCceEE
Confidence 5554 579999999975222 22333334433222 228899998765 66788999999
Q ss_pred EEeCC
Q 043890 421 VFGCA 425 (509)
Q Consensus 421 iw~~~ 425 (509)
||++.
T Consensus 400 IW~~s 404 (422)
T KOG0264|consen 400 IWQMA 404 (422)
T ss_pred Eeecc
Confidence 99987
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=208.32 Aligned_cols=261 Identities=20% Similarity=0.298 Sum_probs=206.4
Q ss_pred eecccceE---EEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 37 VQEVDIIS---AIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 37 ~~h~~~I~---~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.+|...|. ++..+. .++||++|+.||.|++|+...... .|+..+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~-----------------~~s~~~~asme~Hs------- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN-----------------EPSTPYIASMEHHS------- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccC-----------------CcccchhhhhhhhH-------
Confidence 35667777 666664 578899999999999999875543 12223456777777
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
+.|+.+.. ..+++.|++++.|-+|++|+...+...+.
T Consensus 74 -----DWVNDiiL--~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------------------------------------ 110 (735)
T KOG0308|consen 74 -----DWVNDIIL--CGNGKTLISASSDTTVKVWNAHKDNTFCM------------------------------------ 110 (735)
T ss_pred -----hHHhhHHh--hcCCCceEEecCCceEEEeecccCcchhH------------------------------------
Confidence 88999999 77898999999999999999876531111
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEE-CCCCCEEEEE-cCCeEEEEEccCCCc--eeeEe
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISNQ--SFNIV 268 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~-~dg~i~iwd~~~~~~--~~~~~ 268 (509)
++ +..|.+.|.|++. .++..++|+| -|+.|.+||++++.. ..+.-
T Consensus 111 ------------------------------st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 111 ------------------------------ST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred ------------------------------hh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 01 3779999999999 7788889998 899999999997632 11110
Q ss_pred eccCCccC-CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 269 DVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 269 ~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+....+. ++...|++++.++.+ ..+++|+.++.+++||.++.+. +.. +.+|...|..+..+
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k----imk------------LrGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK----IMK------------LRGHTDNVRVLLVN 222 (735)
T ss_pred ccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc----eee------------eeccccceEEEEEc
Confidence 01112333 788999999999998 9999999999999999999873 233 34566899999999
Q ss_pred cCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 348 KDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 348 ~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
.||+.++++ +||+|++||+.. .+++.++..|...+. ++..+|+-.++++|+.||.|+.=|+.+
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VW---------------aL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVW---------------ALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CCCCeEeecCCCceEEeeeccc-cceeeeEEeccCceE---------------EEeeCCCcceEEecCCCCcEEecccCC
Confidence 999999997 479999999996 899999999987655 788889999999999999999999987
Q ss_pred Cc
Q 043890 427 GS 428 (509)
Q Consensus 427 ~~ 428 (509)
-.
T Consensus 287 ~~ 288 (735)
T KOG0308|consen 287 PA 288 (735)
T ss_pred ch
Confidence 43
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-25 Score=209.27 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=191.3
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
.|+...+.++|.|+|++|.+++.||.|++|+....... | ..+.-+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P-----~ti~~~g------------ 56 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------P-----ETIDISG------------ 56 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------C-----chhhccC------------
Confidence 48999999999999999999999999999998766220 1 1111122
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.+++- ++.+|++++.+++|.+|.+.++....+
T Consensus 57 ~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i----------------------------------------- 91 (933)
T KOG1274|consen 57 ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI----------------------------------------- 91 (933)
T ss_pred ceeEEEee----cccceEEeeccceEEEeeCCCCCccce-----------------------------------------
Confidence 45777765 566999999999999999987753211
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+..-+-++++++++.+|+++|.| +|-.|++.++.+.... ..+.
T Consensus 92 ----------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------~~lr 135 (933)
T KOG1274|consen 92 ----------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------KVLR 135 (933)
T ss_pred ----------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--------eeec
Confidence 12234568999999999999999 9999999999876644 2678
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILS 355 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s 355 (509)
+|.++|.++.|+|.+ ++||+.+.||.|++||+..+.+. +++..-..... ..-...+..++|+|+ |++++.
T Consensus 136 gh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~v~k~n~----~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTGVDKDNE----FILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred ccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhcccCCcccc----ccccceeeeeeecCCCCeEEee
Confidence 999999999999998 99999999999999999988752 22221110000 000246788999998 556666
Q ss_pred ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 356 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 356 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
+.++.|++|+... ......+........ +..++|+|.|+|||+++.||.|.|||+++
T Consensus 207 ~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 207 PVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7889999999986 666666554322111 12899999999999999999999999997
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=8.5e-26 Score=182.64 Aligned_cols=221 Identities=16% Similarity=0.271 Sum_probs=171.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|.+++| +.+|..|++++.|+++.+|+++..+......
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------------------------------- 59 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------------------------------- 59 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc---------------------------------------
Confidence 88999999 9999999999999999999998774332211
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
..+|.+.|-.++|+|. ...|+++ .|..|++||++++++...+
T Consensus 60 ----------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i-------- 103 (313)
T KOG1407|consen 60 ----------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI-------- 103 (313)
T ss_pred ----------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------
Confidence 2778888999999875 5678888 8999999999998876543
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.. ...=.-+.|+|+| .+++.++.|..|.+.|.++.+.. ...+.. ..+..++|+-++.+++.
T Consensus 104 ~~-~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~----~~~~~~-------------~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 104 ET-KGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIV----NEEQFK-------------FEVNEISWNNSNDLFFL 164 (313)
T ss_pred ec-cCcceEEEEcCCC-CEEEEecCcccEEEEEeccccee----ehhccc-------------ceeeeeeecCCCCEEEE
Confidence 11 2233458899999 99999999999999999987742 222111 35778889877776665
Q ss_pred e-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 R-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
. +.|.|.|..... -+++..++.|..... ++.|+|+|+|+|+|+.|-.+.+||++.--++. .+
T Consensus 165 t~GlG~v~ILsyps-Lkpv~si~AH~snCi---------------cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R-~i 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPS-LKPVQSIKAHPSNCI---------------CIEFDPDGRYFATGSADALVSLWDVDELICER-CI 227 (313)
T ss_pred ecCCceEEEEeccc-cccccccccCCcceE---------------EEEECCCCceEeeccccceeeccChhHhhhhe-ee
Confidence 4 459999999996 899999999985432 89999999999999999999999999877776 55
Q ss_pred ccCCCceeEEEEcCCCC
Q 043890 435 EASKNPMRRQVQTPSRP 451 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~ 451 (509)
.-+.-||+.+.||-+++
T Consensus 228 sRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDGR 244 (313)
T ss_pred ccccCceEEEEeccCcc
Confidence 55554444444444433
No 97
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=186.30 Aligned_cols=292 Identities=21% Similarity=0.328 Sum_probs=203.3
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcccee
Q 043890 43 ISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 122 (509)
Q Consensus 43 I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 122 (509)
-.|+.|++.|.+||+|+.||.|.|||+.+... ...+.+|. .+|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------------ar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------------ARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-----------------------hhhhhccc------------cceeE
Confidence 68999999999999999999999999998876 57788888 78999
Q ss_pred eEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC
Q 043890 123 IRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI 202 (509)
Q Consensus 123 l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 202 (509)
++| |+||+.|+|++.|..|.+||+..|.+.+..
T Consensus 71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~ri--------------------------------------------- 103 (405)
T KOG1273|consen 71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--------------------------------------------- 103 (405)
T ss_pred EEe--cCCCCEeeeecCCceeEEEeccCCCceeEE---------------------------------------------
Confidence 999 999999999999999999999988644321
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-E-EEEEcCCeEEEEEccCCCceeeEeeccCCccCCCcc
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-T-FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 280 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~-l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
.-..+|+...|+|..+ . +++--+..-.+.++....... .... .-...+.
T Consensus 104 -------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~--Lp~d--~d~dln~ 154 (405)
T KOG1273|consen 104 -------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV--LPKD--DDGDLNS 154 (405)
T ss_pred -------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee--ccCC--Ccccccc
Confidence 1235688888888543 2 333333334555555332211 0000 0011122
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cCC
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DYM 359 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~ 359 (509)
...+..|.+.| +++++|...|.+.++|..+.+. +..+.... ...|..+.++..|++|+.- +|+
T Consensus 155 sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~----vas~rits-----------~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 155 SASHGVFDRRG-KYIITGTSKGKLLVYDAETLEC----VASFRITS-----------VQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred ccccccccCCC-CEEEEecCcceEEEEecchhee----eeeeeech-----------heeeeEEEEeccCcEEEEecCCc
Confidence 22344688888 9999999999999999998764 23332221 1478999999999999985 689
Q ss_pred eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCCCCceeeeeeccCC
Q 043890 360 TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 360 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
.||.|+++.-..+ --.+......++.++...-. ..+++|+.+|.|++.++. -..++||.-..|.+++ .|.+..
T Consensus 219 vIR~ye~~di~~~--~r~~e~e~~~K~qDvVNk~~---Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK-ILhG~k 292 (405)
T KOG1273|consen 219 VIRTYEISDIDDE--GRDGEVEPEHKLQDVVNKLQ---WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK-ILHGTK 292 (405)
T ss_pred eEEEEehhhhccc--CccCCcChhHHHHHHHhhhh---hhheeecCCccEEEeccccceeEEEEecCCcceee-eecCCc
Confidence 9999998730000 00000000001111111111 127899999999987764 4689999999999998 777654
Q ss_pred CceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 439 NPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 439 ~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
......+.|||--..+++-..+.+++|.+
T Consensus 293 ------------------------------------------gE~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 293 ------------------------------------------GEELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred ------------------------------------------hhheeecccccceeeeeeccCCceEEEEe
Confidence 24567899999999999888899999963
No 98
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=4.5e-25 Score=192.17 Aligned_cols=299 Identities=18% Similarity=0.286 Sum_probs=216.2
Q ss_pred ecccceEEEEECCCC--CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 38 QEVDIISAIEFDKTG--DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~--~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
-|.++|++++|+|.. +++|+|+..|+|-+||+.+.+. +..-...+..|.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs---------- 234 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS---------- 234 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC----------
Confidence 378999999999974 6899999999999999974433 112245667777
Q ss_pred hhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 116 IEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 116 ~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
++|.+|.| +| +-..+++.+.||+|+.-|+++.....+....
T Consensus 235 --~~Vs~l~F--~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~---------------------------------- 276 (498)
T KOG4328|consen 235 --GPVSGLKF--SPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD---------------------------------- 276 (498)
T ss_pred --ccccceEe--cCCChhheeeeccCceeeeeeecchhhHHHhhcC----------------------------------
Confidence 88999999 54 3457899999999999999987655543321
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
.....+..+.|+.+...++.+ .=|...+||+++.+..+.
T Consensus 277 ---------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~------- 316 (498)
T KOG4328|consen 277 ---------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE------- 316 (498)
T ss_pred ---------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccch-------
Confidence 112235567788777777777 667999999999875442
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+.-|...|++++++|..+.+||+++.|++.+|||+|.-..-.++ .-....|...|.++.|||++-.|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp------------~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP------------FLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc------------ceecccccceeeeeEEcCCCCce
Confidence 456688899999999999899999999999999999975432111 11123456799999999976666
Q ss_pred EE-ecCCeEEEEECC---CCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 354 LS-RDYMTLKLWDIN---MDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 354 ~s-~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
++ +.|..|+|||.. ....+..++. |.... .+....+.+.|.|+..++++|..-..|-|+|-+.++.
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t---------~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT---------GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred EeeccCCceEEeecccccccCCccceee-ccCcc---------cccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 66 557999999984 2234444443 32211 1112234789999999999999999999999988776
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccce-EEEEEcCCCcEEEEEec--CceEE
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKL-LHLAWHPTENSIACAAA--NSLYM 506 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~la~~~~--~~i~v 506 (509)
+. .+.... ...| .-..|||-...++.|+. +.++|
T Consensus 455 v~-el~~P~------------------------------------------~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 455 VC-ELHDPE------------------------------------------SSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred ee-eccCcc------------------------------------------ccccccceeecccccceeccCCccceEEE
Confidence 65 332221 1122 24789999997776666 78888
Q ss_pred Ee
Q 043890 507 YY 508 (509)
Q Consensus 507 ~~ 508 (509)
|.
T Consensus 492 ft 493 (498)
T KOG4328|consen 492 FT 493 (498)
T ss_pred Ee
Confidence 74
No 99
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.5e-26 Score=215.16 Aligned_cols=256 Identities=16% Similarity=0.241 Sum_probs=206.5
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT 99 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (509)
..|.....+ .....+.+|.+.|.+++|..-+.+|++|+.|.++++||..++++ ..
T Consensus 231 ~~~~~~~~~--~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------~~ 285 (537)
T KOG0274|consen 231 HLWDLNNGY--LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------TH 285 (537)
T ss_pred EEeecccce--EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------EE
Confidence 356655544 22333667999999999998889999999999999999999998 88
Q ss_pred eeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 100 EFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 100 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
++.+|. +.|.++.. ...++++|+.|.+|++|++.++....+
T Consensus 286 ~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l----------------------- 326 (537)
T KOG0274|consen 286 SLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNL----------------------- 326 (537)
T ss_pred EecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEE-----------------------
Confidence 999998 78998876 566889999999999999997764433
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEc
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 258 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~ 258 (509)
+.+|..+|+++..+ +.++++| .|+.|++||+
T Consensus 327 ----------------------------------------------~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 327 ----------------------------------------------LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred ----------------------------------------------eccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 35699999999987 7889998 8999999999
Q ss_pred cCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC-cccCCceeeeccccCCCCccccccc
Q 043890 259 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS-ALCDSHAILFEEQEAPGSRSFFTEI 337 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (509)
.+.+.+. .+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +. +.++..+
T Consensus 359 ~~~~cl~--------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c----~~tl~~h------------ 412 (537)
T KOG0274|consen 359 RTGKCLK--------SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC----IHTLQGH------------ 412 (537)
T ss_pred hhceeee--------eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----hhhhcCC------------
Confidence 9877653 67889999999988875 58999999999999999998 42 4444444
Q ss_pred cccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeec-ccccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 338 IASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 338 ~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
.+-+..+.+ .+++|++++ |+.|++||..+ +++++.+.++ ...+. .+++. ...+++++.
T Consensus 413 ~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v~---------------~l~~~--~~~il~s~~ 472 (537)
T KOG0274|consen 413 TSLVSSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGVS---------------ALALG--KEEILCSSD 472 (537)
T ss_pred ccccccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCcccEE---------------EeecC--cceEEEEec
Confidence 355655544 578899876 69999999997 7888888873 33322 44443 467888999
Q ss_pred CCcEEEEeCCCCceeeeee
Q 043890 416 SNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 416 dg~i~iw~~~~~~~~~~~~ 434 (509)
||.+++||+++++... .+
T Consensus 473 ~~~~~l~dl~~~~~~~-~l 490 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLIR-TL 490 (537)
T ss_pred CCeeEEEecccCchhh-hh
Confidence 9999999999998887 44
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=172.15 Aligned_cols=251 Identities=18% Similarity=0.293 Sum_probs=185.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|.+.|+|.+|+|+|++||+|+.|..|++........ ...+|+-+ -..|++
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-------------------------~~~g~dle-----~nmhdg 137 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-------------------------NATGHDLE-----FNMHDG 137 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccc-------------------------cccCccee-----eeecCC
Confidence 899999999999999999999999999987765443 22333311 122348
Q ss_pred cceeeEEE--EcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 119 KINKIRWC--QTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 119 ~v~~l~~~--~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
.|..++|. |...+..|++++. |..|.+=|...+...+.
T Consensus 138 tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--------------------------------------- 178 (350)
T KOG0641|consen 138 TIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--------------------------------------- 178 (350)
T ss_pred ceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee---------------------------------------
Confidence 89999997 4445667777654 66666666655542211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|.+.|.++- +-++-++++| .|.+|++||++-......+ . ..
T Consensus 179 ------------------------------~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l-~---~~ 223 (350)
T KOG0641|consen 179 ------------------------------LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTL-D---ND 223 (350)
T ss_pred ------------------------------ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeec-c---Cc
Confidence 377888887763 4567889999 9999999999975543221 1 11
Q ss_pred cCC---CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 275 MED---LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 275 ~~~---~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
+.. ....|.+++..|.| ++|++|-.|....+||++.++. +..|..+ ...|.++.|+|...
T Consensus 224 ~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~----iq~f~ph------------sadir~vrfsp~a~ 286 (350)
T KOG0641|consen 224 FHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM----IQRFHPH------------SADIRCVRFSPGAH 286 (350)
T ss_pred ccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce----eeeeCCC------------ccceeEEEeCCCce
Confidence 111 24679999999999 9999999999999999999875 4445444 47899999999999
Q ss_pred EEEEecC-CeEEEEECCCC---CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 352 HILSRDY-MTLKLWDINMD---SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 352 ~l~s~~~-~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
|++++++ ..|++=|++.. .-++.....|...+ ..+.|+|+.--+++.+.|.++.+|-++
T Consensus 287 yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecccceEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence 9999985 99999999842 12233344444332 178999999889999999999999765
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.8e-26 Score=190.34 Aligned_cols=248 Identities=15% Similarity=0.208 Sum_probs=210.7
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeec-cCCcchhhcc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ-SHEPEFDYLK 112 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~ 112 (509)
..++-|.++|.|+.||.|...||+|+.||.|++|.+.++.+ +..|. +|+
T Consensus 257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C-----------------------lRrFdrAHt------- 306 (508)
T KOG0275|consen 257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC-----------------------LRRFDRAHT------- 306 (508)
T ss_pred cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH-----------------------HHHhhhhhc-------
Confidence 34455899999999999999999999999999999999998 45554 777
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|+++.| +.|+..+++++.|.++++.-+.+|++.+.
T Consensus 307 -----kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKE------------------------------------ 343 (508)
T KOG0275|consen 307 -----KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKE------------------------------------ 343 (508)
T ss_pred -----cCeeEEEE--ccCcchhhcccccceEEEeccccchhHHH------------------------------------
Confidence 78999999 99999999999999999999999987665
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+.+|..-|+...|.++|..++++ .||+|++|+..+.++....
T Consensus 344 ---------------------------------frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf---- 386 (508)
T KOG0275|consen 344 ---------------------------------FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF---- 386 (508)
T ss_pred ---------------------------------hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc----
Confidence 48899999999999999999999 9999999999998766443
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
...+.+.+|.++..-|.++..++++...++|.+-++...- ++.|...... .+...+.+.+|.|.
T Consensus 387 --k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-----VrsfsSGkRE---------gGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 387 --KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-----VRSFSSGKRE---------GGDFINAILSPKGE 450 (508)
T ss_pred --cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-----EeeeccCCcc---------CCceEEEEecCCCc
Confidence 2334677899999999888899999999999999988653 5666544322 24567788999999
Q ss_pred EEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 352 HILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 352 ~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
++.+. .|+.++.|.+.+ +++..++..|+..+- .++-+|..+.||+-++||.+++|.
T Consensus 451 wiYcigED~vlYCF~~~s-G~LE~tl~VhEkdvI---------------Gl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLS-GKLERTLPVHEKDVI---------------GLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeec-Cceeeeeeccccccc---------------ccccCcccchhhhhcccchhhhcC
Confidence 99985 579999999997 788888888876543 788899999999999999999996
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.9e-26 Score=180.76 Aligned_cols=259 Identities=17% Similarity=0.240 Sum_probs=198.9
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
..+|.+.|..+..+--|+.|||++.|+.|+|+....... ..++.++.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~---------- 56 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS---------- 56 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC----------
Confidence 456999999999999999999999999999999986653 12368899999
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
++|..+.|.-...|..||+++.||.|.||.-.+++-.+...
T Consensus 57 --GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e------------------------------------- 97 (299)
T KOG1332|consen 57 --GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE------------------------------------- 97 (299)
T ss_pred --CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh-------------------------------------
Confidence 89999999633389999999999999999998885433311
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
...|...|++++|.|. |-.|+++ .||.|.|.+.+....... .
T Consensus 98 ------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-----~ 142 (299)
T KOG1332|consen 98 ------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-----S 142 (299)
T ss_pred ------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-----h
Confidence 2678899999999886 5678888 999999999987622111 1
Q ss_pred CccCCCccceEEEEEeCC---C----------CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 273 ANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~---~----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
.....|.-.|++++|.|. | .+.|++|+.|+.|+||+...+.-.. - .++.+|..
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e------------~~l~~H~d 208 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--E------------RTLEGHKD 208 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--h------------hhhhhcch
Confidence 245779999999999986 2 1569999999999999998864210 1 22566779
Q ss_pred cEEEEEEecCC----CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 340 SISDIKFAKDG----RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 340 ~i~~~~~s~~~----~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
.|+.++|.|.- .+|++++ ||++.||..+....+-+.-..+. . .+. +..+.||+.|+.|+.++
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~-f---------~~~---~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE-F---------PDV---VWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc-C---------Ccc---eEEEEEeccccEEEEec
Confidence 99999999954 4788886 69999998774222211111111 0 011 23899999999999999
Q ss_pred CCCcEEEEeCC
Q 043890 415 YSNLFRVFGCA 425 (509)
Q Consensus 415 ~dg~i~iw~~~ 425 (509)
.|+.|.+|.-+
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999865
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=186.60 Aligned_cols=230 Identities=17% Similarity=0.243 Sum_probs=174.2
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.+.+-+| ++||.++++|+.|..|+|.|++..-.+.. ...
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~-~~e------------------------------------- 152 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSK-PKE------------------------------------- 152 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcc-hhh-------------------------------------
Confidence 88999999 99999999999999999999874211110 000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+...+.+.....+|++ ..|..+|+++.|+|....|+++ .|++|++||+....... .....
T Consensus 153 ------------m~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr------A~K~~ 213 (430)
T KOG0640|consen 153 ------------MISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR------AFKVF 213 (430)
T ss_pred ------------hccCCcccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH------HHHHh
Confidence 0000001112334454 8899999999999999999999 99999999997532110 01222
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
....+|.++.|+|.| .+|++|....++++||+++-+. |.... .-..|.+.|+++.+++.|++.+++
T Consensus 214 qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qc-------fvsan------Pd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 214 QDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQC-------FVSAN------PDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred hccceeeeEeecCCC-ceEEEecCCCceeEEeccceeE-------eeecC------cccccccceeEEEecCCccEEEEe
Confidence 345789999999999 9999999999999999998762 11111 124467899999999999999999
Q ss_pred c-CCeEEEEECCCCCCceEEEee-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 357 D-YMTLKLWDINMDSGPVATFQV-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
+ ||.|+|||=-+ ++++.++.. |.+.. |.++.|..+++|+++.+.|..+++|.+.+++++. ++
T Consensus 280 SkDG~IklwDGVS-~rCv~t~~~AH~gse--------------vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~-~Y 343 (430)
T KOG0640|consen 280 SKDGAIKLWDGVS-NRCVRTIGNAHGGSE--------------VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK-EY 343 (430)
T ss_pred ccCCcEEeecccc-HHHHHHHHhhcCCce--------------eeeEEEccCCeEEeecCCcceeeeeeecCCceEE-EE
Confidence 7 69999999876 688877764 43321 2378899999999999999999999999999987 55
Q ss_pred cc
Q 043890 435 EA 436 (509)
Q Consensus 435 ~~ 436 (509)
.+
T Consensus 344 tG 345 (430)
T KOG0640|consen 344 TG 345 (430)
T ss_pred ec
Confidence 44
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.3e-26 Score=180.93 Aligned_cols=247 Identities=16% Similarity=0.250 Sum_probs=188.0
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|..+.. .-.|++|+|++.|++|+|+.++.......
T Consensus 12 D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~s~l----------------------------------------- 48 (299)
T KOG1332|consen 12 DMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQSKL----------------------------------------- 48 (299)
T ss_pred hhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCCcee-----------------------------------------
Confidence 77888877 66899999999999999999986542110
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+. -+.+|.++|..++|.. -|.+||++ .||.|.||.-..++.. +...
T Consensus 49 ------------------------l~-~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~------k~~e 97 (299)
T KOG1332|consen 49 ------------------------LA-ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT------KAYE 97 (299)
T ss_pred ------------------------ee-EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh------hhhh
Confidence 00 1489999999999954 59999999 8999999998876432 2246
Q ss_pred cCCCccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC---C
Q 043890 275 MEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD---G 350 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~ 350 (509)
...|+..|++++|.|.+ +-.|++++.||.|.|.+.+..... . ...+...|.-.|++++|.|. |
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-~------------t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-T------------TSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-c------------chhhhhccccccceeeecCcCCCc
Confidence 67899999999999975 358899999999999998876311 1 11223456679999999995 4
Q ss_pred -----------CEEEEec-CCeEEEEECCCCC-CceEEEeecccccccccccccCCCccceeeEEEcCCC----CEEEEe
Q 043890 351 -----------RHILSRD-YMTLKLWDINMDS-GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG----LRVATG 413 (509)
Q Consensus 351 -----------~~l~s~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~ 413 (509)
+.|++|+ |+.|+||+..... ..-..+.+|...+. +++|.|.- .+||++
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR---------------DVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR---------------DVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh---------------hhhhccccCCCceeeEEe
Confidence 5588865 7999999998632 23345888999876 89999864 579999
Q ss_pred eCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCccc-ccccceEEEEEcCC
Q 043890 414 SYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSF-DFTTKLLHLAWHPT 492 (509)
Q Consensus 414 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~ 492 (509)
++||++.||..+ .+... .+ ...+ .|...+..++||+.
T Consensus 230 SqDg~viIwt~~-~e~e~--wk---------------------------------------~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 230 SQDGTVIIWTKD-EEYEP--WK---------------------------------------KTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred cCCCcEEEEEec-CccCc--cc---------------------------------------ccccccCCcceEEEEEecc
Confidence 999999999876 22111 00 0011 25678999999999
Q ss_pred CcEEEEEec-CceEEEe
Q 043890 493 ENSIACAAA-NSLYMYY 508 (509)
Q Consensus 493 ~~~la~~~~-~~i~v~~ 508 (509)
|+.||+++. +++.+|-
T Consensus 268 Gn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccEEEEecCCcEEEEEE
Confidence 999998887 8898884
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4e-26 Score=196.15 Aligned_cols=246 Identities=15% Similarity=0.264 Sum_probs=192.2
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
...+-|..+.|+++.|.++++++++++.|+.+++|+++..+. ..++.||.
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~-----------------------~~TLsGHt------- 261 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL-----------------------RHTLSGHT------- 261 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh-----------------------hhhhcccc-------
Confidence 445556778999999999999999999999999999998887 67889999
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
+.|+++.| ......+++|+.|.+|+.||+....+.+.
T Consensus 262 -----dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt------------------------------------ 298 (459)
T KOG0288|consen 262 -----DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKT------------------------------------ 298 (459)
T ss_pred -----cceeeehh--hccccceeeccccchhhhhhhhhhheecc------------------------------------
Confidence 88999999 55555599999999999999987654332
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
++.+ ..+.+|..+ ...+++| -|+.|++||.++......
T Consensus 299 --------------------------------~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s----- 337 (459)
T KOG0288|consen 299 --------------------------------VLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS----- 337 (459)
T ss_pred --------------------------------cccc--ccccceEec--ceeeeecccccceEEEeccCCceeeE-----
Confidence 0111 123344443 5568888 899999999998775543
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.. ..+.|+++..++++ ..+.+++.|.++.+.|+++... ..++..... ..+ ...+.+.|||++.
T Consensus 338 ---v~-~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI----~~~~sA~g~------k~a--sDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 338 ---VP-LGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEI----RQTFSAEGF------KCA--SDWTRVVFSPDGS 400 (459)
T ss_pred ---ee-cCcceeeEeeccCC-eEEeeecCCCceeeeecccccE----EEEeecccc------ccc--cccceeEECCCCc
Confidence 22 24599999999998 8888889999999999999874 233332211 111 3478899999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
|+++|+ ||.|+||++.+ +++...+....... .|+++.|+|.|.+|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence 999986 69999999997 67777776544321 134999999999999999999999994
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.7e-25 Score=190.92 Aligned_cols=286 Identities=15% Similarity=0.211 Sum_probs=212.4
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
.++|++|.|+|...+|++++.||+++||.++.... | .++++.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N------------------~---~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN------------------P---KLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC------------------h---hheeeeecc------------Cc
Confidence 47899999999999999999999999999986544 0 122222222 56
Q ss_pred ceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 120 INKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 120 v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
|.+..| .|+|. .+++++....+..||+.+.+..++...
T Consensus 260 i~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~--------------------------------------- 298 (514)
T KOG2055|consen 260 IQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP--------------------------------------- 298 (514)
T ss_pred cceeee--cCCCceEEEecccceEEEEeeccccccccccCC---------------------------------------
Confidence 999999 88998 899999999999999998875544221
Q ss_pred CCCCCccccccccccccceeeeeeeeeeccc-ccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.++ ...+....+++++++++.. ..|.|.+....+++.+..+
T Consensus 299 ----------------------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--------- 341 (514)
T KOG2055|consen 299 ----------------------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--------- 341 (514)
T ss_pred ----------------------------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------
Confidence 122 2335667789999999988 8999999999887754332
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
...+.|..+.|+.++ +.|++++.+|.|.+||++.... ++.|..... -.-++++.+++|.+||+|
T Consensus 342 KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~----~~rf~D~G~-----------v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 342 KIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSC----LHRFVDDGS-----------VHGTSLCISLNGSYLATG 405 (514)
T ss_pred eeccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcce----EEEEeecCc-----------cceeeeeecCCCceEEec
Confidence 236789999999998 8888888999999999999853 566654320 123567778999999999
Q ss_pred cC-CeEEEEECCCC-----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC--CCcEEEEeCCCCc
Q 043890 357 DY-MTLKLWDINMD-----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY--SNLFRVFGCAPGS 428 (509)
Q Consensus 357 ~~-~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~ 428 (509)
++ |.|-|||.++. .+|+..+..-.. .|.+++|++|.++||.++. +..+++-.+.+..
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt---------------~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTT---------------AITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhhe---------------eeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 98 99999997641 233333332222 2348999999999998874 6788888777554
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
... .+.....+ -..|+||+|+|.+-+||+|.. +.+.+|
T Consensus 471 VFs-NfP~~n~~----------------------------------------vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 471 VFS-NFPTSNTK----------------------------------------VGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eec-cCCCCCCc----------------------------------------ccceEEEEecCCCceEEeecCCCceeeE
Confidence 332 22211110 155899999999999999999 899998
Q ss_pred e
Q 043890 508 Y 508 (509)
Q Consensus 508 ~ 508 (509)
.
T Consensus 510 k 510 (514)
T KOG2055|consen 510 K 510 (514)
T ss_pred e
Confidence 4
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.4e-25 Score=213.06 Aligned_cols=269 Identities=17% Similarity=0.298 Sum_probs=194.1
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|.+.|+|+.|+|||++||+|++|+.|.||+.... .....+.. .-.....-.++....+.+|.
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs----~g~~~~vE~wk~~~~l~~H~----------- 129 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGS----TGGAKNVESWKVVSILRGHD----------- 129 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccc----cccccccceeeEEEEEecCC-----------
Confidence 459999999999999999999999999999998851 10111110 00111122456678889998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|..+.| +|++.+|++++.|++|.|||..+.+...+
T Consensus 130 -~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~v---------------------------------------- 166 (942)
T KOG0973|consen 130 -SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKV---------------------------------------- 166 (942)
T ss_pred -Cccceecc--CCCccEEEEecccceEEEEccccceeeee----------------------------------------
Confidence 77999999 99999999999999999999987743322
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+.+|...|..+.|.|-|++||+- +|++|++|++.+-...-.+. +|..-
T Consensus 167 -----------------------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It--~pf~~ 215 (942)
T KOG0973|consen 167 -----------------------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT--KPFEE 215 (942)
T ss_pred -----------------------------eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec--cchhh
Confidence 48899999999999999999999 99999999976532221110 11121
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEc----CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-- 349 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-- 349 (509)
......+..+.|+||| .+|++... -.++.|.+-.+.+ ....+-+|..++.+++|+|.
T Consensus 216 ~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk----------------~~~~LvGH~~p~evvrFnP~lf 278 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK----------------VDKDLVGHSAPVEVVRFNPKLF 278 (942)
T ss_pred CCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce----------------eeeeeecCCCceEEEEeChHHh
Confidence 2234567899999999 88887643 2245555543332 12335667789999999981
Q ss_pred ---CC------------EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 043890 350 ---GR------------HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG 413 (509)
Q Consensus 350 ---~~------------~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 413 (509)
.+ .+|+|+ |++|.||.... .+|+.....-. +.+ |.+++|+|||..|+.+
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf-----------~~S---I~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLF-----------NKS---IVDMSWSPDGFSLFAC 343 (942)
T ss_pred ccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhh-----------cCc---eeeeeEcCCCCeEEEE
Confidence 11 344565 69999999875 56654433211 122 2399999999999999
Q ss_pred eCCCcEEEEeCCCC
Q 043890 414 SYSNLFRVFGCAPG 427 (509)
Q Consensus 414 ~~dg~i~iw~~~~~ 427 (509)
+.||+|.+...+..
T Consensus 344 S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 344 SLDGTVALIHFEEK 357 (942)
T ss_pred ecCCeEEEEEcchH
Confidence 99999999998753
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-24 Score=178.34 Aligned_cols=241 Identities=17% Similarity=0.270 Sum_probs=187.4
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|++|.| +.+|+++++++.|.++++||..+++..+.
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~t----------------------------------------- 51 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKT----------------------------------------- 51 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeE-----------------------------------------
Confidence 67999999 99999999999999999999998875543
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEE-E--cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
...+...+..++|....+.++. . .|..|+..++.+.+.+ ..
T Consensus 52 ----------------------------i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl--------RY 95 (311)
T KOG1446|consen 52 ----------------------------INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL--------RY 95 (311)
T ss_pred ----------------------------eecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE--------EE
Confidence 1334455777778555444444 3 5999999999987755 36
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+.+|...|++|+.+|-+ ..+++++.|++|++||++..+. ...+.. ..-..++|+|+|-++|
T Consensus 96 F~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c----qg~l~~--------------~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 96 FPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC----QGLLNL--------------SGRPIAAFDPEGLIFA 156 (311)
T ss_pred cCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC----ceEEec--------------CCCcceeECCCCcEEE
Confidence 89999999999999998 9999999999999999996652 122221 2334578999999999
Q ss_pred EecC-CeEEEEECCCC-CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 355 SRDY-MTLKLWDINMD-SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
++.. +.|++||+++. ..|..++....... ..+..+.|||||++|+.++..+.+++.|.-+|....
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~------------~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~- 223 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDE------------AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS- 223 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCc------------cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-
Confidence 9876 69999999974 45666665442111 012389999999999999999999999999999776
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.+..+... ..--....|.||++++.+|++ +.+++|++
T Consensus 224 tfs~~~~~----------------------------------------~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 224 TFSGYPNA----------------------------------------GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred eEeeccCC----------------------------------------CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 66665411 011157899999999999998 99999985
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=195.48 Aligned_cols=242 Identities=16% Similarity=0.273 Sum_probs=191.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
-.+.|+++.|-.||++||+|+..|.|+|||..+... +..+.+|+ .
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-----------------------LR~~~ah~------------a 111 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI-----------------------LRQLYAHQ------------A 111 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHH-----------------------HHHHhhcc------------C
Confidence 468899999999999999999999999999554333 56778888 8
Q ss_pred cceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 119 KINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 119 ~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+|..+.| +| ++..|++|+.|+.+++||+.+... +
T Consensus 112 pv~~~~f--~~~d~t~l~s~sDd~v~k~~d~s~a~v-~------------------------------------------ 146 (487)
T KOG0310|consen 112 PVHVTKF--SPQDNTMLVSGSDDKVVKYWDLSTAYV-Q------------------------------------------ 146 (487)
T ss_pred ceeEEEe--cccCCeEEEecCCCceEEEEEcCCcEE-E------------------------------------------
Confidence 8999999 55 455778888899999999987652 1
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
..+.+|++.|+|.+|+|... .+++| .||.|++||++...... ..
T Consensus 147 --------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v--------~e 192 (487)
T KOG0310|consen 147 --------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV--------VE 192 (487)
T ss_pred --------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee--------EE
Confidence 12488999999999999755 67788 89999999999864211 22
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
..|..+|..+.+-|.| .++++++. ..|++||+.++... +..+ ..|...|+|+++..++..|++
T Consensus 193 lnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~ql---l~~~------------~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQL---LTSM------------FNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred ecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCcee---hhhh------------hcccceEEEEEeecCCceEee
Confidence 4589999999999998 78888765 57999999966531 1111 224578999999999999999
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
++ |+.|++||+.+ .+.+..+..... |.+++.+|+++.++.|-.||.+.+=+...++
T Consensus 256 ~sLD~~VKVfd~t~-~Kvv~s~~~~~p----------------vLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTN-YKVVHSWKYPGP----------------VLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred cccccceEEEEccc-eEEEEeeecccc----------------eeeEEecCCCceEEEecccceeeeehhhccc
Confidence 87 79999999775 677776665433 2389999999999999999998877554443
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.4e-24 Score=198.46 Aligned_cols=279 Identities=13% Similarity=0.199 Sum_probs=221.2
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
...+.+|...|..+++.+. ..+++++.||++++|+-...+. .-...+.+|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~------- 57 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPK------- 57 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCccc---------------------ccceecccCc-------
Confidence 4455679999999887755 4788999999999999866554 0123456665
Q ss_pred chhhhcccee-eEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 113 SLEIEEKINK-IRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 113 ~~~~~~~v~~-l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
+.|.. +++.+ .++.+|++|+.|..|.+|.........+
T Consensus 58 -----g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~----------------------------------- 96 (745)
T KOG0301|consen 58 -----GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYT----------------------------------- 96 (745)
T ss_pred -----ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhh-----------------------------------
Confidence 55665 77733 4666899999999999999987764433
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+.+|+..|.+++...++. +++| -|.++++|....-.
T Consensus 97 ----------------------------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-------- 133 (745)
T KOG0301|consen 97 ----------------------------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-------- 133 (745)
T ss_pred ----------------------------------hhccccceeeeecCCcCc-eEecccccceEEecchhhh--------
Confidence 489999999999888887 8888 79999999876433
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
..+.+|...|.+++.-|.+ .+++|+.|.+|++|.-.+ . +++| .+|...|+.+++-+++
T Consensus 134 --~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~----l~tf------------~gHtD~VRgL~vl~~~ 191 (745)
T KOG0301|consen 134 --YSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT--L----LKTF------------SGHTDCVRGLAVLDDS 191 (745)
T ss_pred --cccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc--h----hhhh------------ccchhheeeeEEecCC
Confidence 2578999999999999985 899999999999997532 2 3444 4556899999999988
Q ss_pred CEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 351 RHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 351 ~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
.++-++.||.|++|++. +..+..+.+|+..+. ++....++..++++++|++++||+.. ++.
T Consensus 192 ~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vY---------------sis~~~~~~~Ivs~gEDrtlriW~~~--e~~ 252 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVY---------------SISMALSDGLIVSTGEDRTLRIWKKD--ECV 252 (745)
T ss_pred CeEeecCCceEEEEecc--CceeeeeeccceEEE---------------EEEecCCCCeEEEecCCceEEEeecC--ceE
Confidence 87777778999999995 688899999988754 88877888999999999999999977 444
Q ss_pred eeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 431 ATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
+ .+.-. +..|+++.+-++|..++.+++|.+|||..
T Consensus 253 q-~I~lP-------------------------------------------ttsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 253 Q-VITLP-------------------------------------------TTSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred E-EEecC-------------------------------------------ccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 3 32211 24689999999999999999999999963
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.8e-25 Score=194.77 Aligned_cols=283 Identities=12% Similarity=0.223 Sum_probs=218.2
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|..-|.++++|...++++||+. |.|+|||+..... ..| ...+..-. .
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~----------------k~P----vsqLdcl~----------r 464 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN----------------KSP----VSQLDCLN----------R 464 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC----------------CCc----cccccccC----------c
Confidence 458899999999999999999995 6799999975432 011 11222111 1
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+.-|.+... .|||+.|++|+.-.++.|||+......-..+
T Consensus 465 dnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae-------------------------------------- 504 (705)
T KOG0639|consen 465 DNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-------------------------------------- 504 (705)
T ss_pred ccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh--------------------------------------
Confidence 255888888 9999999999999999999998654322211
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+....-....++.+||.++..++ .||.|.|||+.....+ ..+
T Consensus 505 -----------------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V--------rqf 547 (705)
T KOG0639|consen 505 -----------------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV--------RQF 547 (705)
T ss_pred -----------------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee--------ecc
Confidence 11122346678899999998888 9999999999964432 378
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.+|.+.+.||.++++| ..|-+|+-|++||.||++.++... .+. ..+.|.++.++|++.+|+.
T Consensus 548 qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-------qhd----------F~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-------QHD----------FSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-------hhh----------hhhhheecccCCCccceee
Confidence 9999999999999999 999999999999999999986421 111 1268999999999999999
Q ss_pred ecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 RDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
|-. +.+.|..... .....+..|+..+. ++.|.+-|+++++.+.|+.+..|...-|..+. ..
T Consensus 610 GMens~vevlh~sk--p~kyqlhlheScVL---------------SlKFa~cGkwfvStGkDnlLnawrtPyGasiF-qs 671 (705)
T KOG0639|consen 610 GMENSNVEVLHTSK--PEKYQLHLHESCVL---------------SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QS 671 (705)
T ss_pred ecccCcEEEEecCC--ccceeecccccEEE---------------EEEecccCceeeecCchhhhhhccCcccccee-ec
Confidence 965 8888877763 44455666766543 89999999999999999999999999887665 11
Q ss_pred ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecC-ceEEE
Q 043890 435 EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAAN-SLYMY 507 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~-~i~v~ 507 (509)
+ -..+|.++..+.|.+++++|+.+ ..-||
T Consensus 672 k--------------------------------------------E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 672 K--------------------------------------------ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred c--------------------------------------------ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 1 03679999999999999999985 55555
No 112
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=7.5e-24 Score=201.83 Aligned_cols=178 Identities=15% Similarity=0.237 Sum_probs=133.8
Q ss_pred ecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 226 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 226 ~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
+.+|...|.+++|+|+ +++|++| .|+.|++||+.+..............+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3889999999999997 7899999 9999999999864321110000012457899999999999998456789999999
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccc
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
|++||+++++. ...+.. ...|.+++|+|+|.+|++++ |+.|+|||+++ +..+..+.+|.+.
T Consensus 150 IrIWDl~tg~~----~~~i~~-------------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~ 211 (568)
T PTZ00420 150 VNIWDIENEKR----AFQINM-------------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG 211 (568)
T ss_pred EEEEECCCCcE----EEEEec-------------CCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence 99999998763 222321 24799999999999999875 69999999997 6777888888765
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeeCCC----cEEEEeCCC-Cceee
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN----LFRVFGCAP-GSTEA 431 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iw~~~~-~~~~~ 431 (509)
+... .+....|++++.+|++++.|+ +|+|||++. ++++.
T Consensus 212 ~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 212 KNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred ceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 3210 011234678999999988774 799999985 44443
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.2e-26 Score=209.82 Aligned_cols=246 Identities=17% Similarity=0.285 Sum_probs=192.4
Q ss_pred ceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 42 IISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 42 ~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
.+..|.|+. +.++|||++.+|.|.+||+...-. .+.+..|..|+ ..|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r--------------------nk~l~~f~EH~------------Rs~ 136 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR--------------------NKLLTVFNEHE------------RSA 136 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc--------------------chhhhHhhhhc------------cce
Confidence 456678874 368999999999999999986211 01156778888 789
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
+++.|. +-...+|++|+.||.|++||++..+....
T Consensus 137 ~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t-------------------------------------------- 171 (839)
T KOG0269|consen 137 NKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKST-------------------------------------------- 171 (839)
T ss_pred eeeeec-cCCccEEEecCCCceEEEEeeeccccccc--------------------------------------------
Confidence 999995 33455899999999999999987654332
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+.+....|+++.|+|. +..|+++ +.|.+++||++..+... ..+.+|
T Consensus 172 -------------------------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-------~k~~AH 219 (839)
T KOG0269|consen 172 -------------------------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-------KKLTAH 219 (839)
T ss_pred -------------------------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-------HHhhcc
Confidence 1345566999999985 7788999 99999999999877554 267899
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE-EEEe-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH-ILSR- 356 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~- 356 (509)
.++|.++.|+|++ .+||+|+.|+.|+|||+...+. .+..++... .++..++|-|+..+ |+++
T Consensus 220 ~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--~~~~tInTi-------------apv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 220 NGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA--KPKHTINTI-------------APVGRVKWRPARSYHLATCS 283 (839)
T ss_pred cCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc--cceeEEeec-------------ceeeeeeeccCccchhhhhh
Confidence 9999999999987 9999999999999999997653 112333322 58999999998765 5554
Q ss_pred --cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCC
Q 043890 357 --DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 357 --~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
.|-.|+|||++.+--|..++..|...++ .++|.. |-..|.+++.||.|..-.++++
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt---------------~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEHTDSVT---------------GIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccccceEEEEeeccccccceeeeccCcccc---------------ceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 3589999999987788899999988766 788854 5567889999998876655544
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.9e-24 Score=197.06 Aligned_cols=359 Identities=17% Similarity=0.233 Sum_probs=228.5
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
.++.|++....|...-.|..++|||+.+....++. ..+-.|. ..|.++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~--------------------~s~lyHS------------~ciW~V 375 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC--------------------SSMLYHS------------ACIWDV 375 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccce--------------------eeeeecc------------ceeeee
Confidence 56889999999999999999999999987663332 2233343 334444
Q ss_pred EEEE----------cCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 124 RWCQ----------TANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 124 ~~~~----------~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
.-.| -|.+ -|++++.|++|++|++.....-.+...+. ++ ..-..+.+..+..
T Consensus 376 e~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNi-----------ls--~~l~ki~y~d~~~---- 437 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNI-----------LS--ANLSKIPYEDSTQ---- 437 (1080)
T ss_pred ccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeeccc-----------ch--hhhhcCccccCch----
Confidence 4321 1233 58999999999999998632211111100 00 0000000000000
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
+.+..-.....+..... .......+++++.+|+|++||+| .-|.+++|++...+...
T Consensus 438 ---------q~~~d~~~~~fdka~~s------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~------- 495 (1080)
T KOG1408|consen 438 ---------QIMHDASAGIFDKALVS------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC------- 495 (1080)
T ss_pred ---------hhhhhccCCcccccchh------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-------
Confidence 00000000000000000 12334569999999999999999 89999999999766443
Q ss_pred CccCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 273 ANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.++.|...|.++.|+.. +.++||+++.|+-|.|||....-. ..+++.+|...|+++.|..+|
T Consensus 496 -~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~---------------l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 496 -FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD---------------LVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred -heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc---------------hhhhhcccccceeEEEEeecC
Confidence 56889999999999853 237899999999999999876542 123456677999999999877
Q ss_pred --CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 351 --RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 351 --~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
..+++++ |..|. |+......-...+..|.....+ ..+++++..|..+++++++.|..|+||++.+|
T Consensus 560 ln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~k----------tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSK----------TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred CceEEEeccCchhhh-eehhccccCceecccccccccc----------ceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 5666654 55554 4443222223334434332221 11348999999999999999999999999999
Q ss_pred ceeeeeeccCC---CceeEEEEcCCCCCCcccceeeEeecCCCCCcccC-----CCcccccccceEEEEEcCCCcEEEEE
Q 043890 428 STEATTLEASK---NPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDT-----NGNSFDFTTKLLHLAWHPTENSIACA 499 (509)
Q Consensus 428 ~~~~~~~~~~~---~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~p~~~~la~~ 499 (509)
+..+ .|++.. +..-.+...|++.+...+.. .+.+...+. ....++|..-|+.+.|.+|.+.|++.
T Consensus 629 Kq~k-~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 629 KQVK-SFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred ceee-eecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence 9998 888654 44556666777665322211 111112221 11123568899999999999888866
Q ss_pred ec-CceEEEe
Q 043890 500 AA-NSLYMYY 508 (509)
Q Consensus 500 ~~-~~i~v~~ 508 (509)
+. +.|+||.
T Consensus 702 sgDgCIFvW~ 711 (1080)
T KOG1408|consen 702 SGDGCIFVWK 711 (1080)
T ss_pred cCCceEEEEE
Confidence 65 9999996
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=9.5e-25 Score=190.34 Aligned_cols=285 Identities=18% Similarity=0.264 Sum_probs=199.0
Q ss_pred cCCcchhhccchhhhccceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccC
Q 043890 103 SHEPEFDYLKSLEIEEKINKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSP 181 (509)
Q Consensus 103 ~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (509)
.+...++..+.+.|++.|+.+++ -|+.. .+++.+..+.|.|||.............
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRy--mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~--------------------- 166 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARY--MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGE--------------------- 166 (422)
T ss_pred ccccceEEEEeccCCccchhhhh--CCCCCcEEEecCCCCCEEEEEeccCCCccccccc---------------------
Confidence 34445555566677799999999 55544 5667788999999998764322211000
Q ss_pred CccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEcc
Q 043890 182 KPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLE 259 (509)
Q Consensus 182 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~ 259 (509)
..+. ..+.+|...-.+++|++.. -.|+++ +|+.|.+||+.
T Consensus 167 -------------------------------------~~Pd-l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 167 -------------------------------------CRPD-LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred -------------------------------------CCCc-eEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence 0000 0147888878889998864 356666 99999999998
Q ss_pred CCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
.....-.... +...+.+|...|..++|++....+|++++.|+.+.|||+|++.. ++. ....+|.+
T Consensus 209 ~~~~~~~~~~-p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~------------~~~~ah~~ 273 (422)
T KOG0264|consen 209 AESKEDKVVD-PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPS------------HSVKAHSA 273 (422)
T ss_pred ccccCCcccc-ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCc------------ccccccCC
Confidence 6543211110 11367889999999999998878999999999999999997421 111 22455678
Q ss_pred cEEEEEEecC-CCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCC
Q 043890 340 SISDIKFAKD-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYS 416 (509)
Q Consensus 340 ~i~~~~~s~~-~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 416 (509)
.|++++|+|- +..||+|+ |++|.+||+++-..++.++.+|...+. ++.|+|.. ..||+++.|
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~---------------~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF---------------QVEWSPHNETVLASSGTD 338 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE---------------EEEeCCCCCceeEecccC
Confidence 9999999995 45666776 799999999988889999999988754 99999965 678899999
Q ss_pred CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEE
Q 043890 417 NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
+.+.|||+..-...+..-.+..+|.- +.|. -.+|+..|..++|+|+..++
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppE-llF~-----------------------------HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPE-LLFI-----------------------------HGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcc-eeEE-----------------------------ecCcccccccccCCCCCCeE
Confidence 99999999742222101111111111 1110 11357889999999999887
Q ss_pred EEEec--CceEEEe
Q 043890 497 ACAAA--NSLYMYY 508 (509)
Q Consensus 497 a~~~~--~~i~v~~ 508 (509)
+++.. +.+.||.
T Consensus 389 I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 389 IASVAEDNILQIWQ 402 (422)
T ss_pred EEEecCCceEEEee
Confidence 75544 7888985
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-24 Score=177.75 Aligned_cols=251 Identities=13% Similarity=0.228 Sum_probs=186.8
Q ss_pred eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCce
Q 043890 54 HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGAL 133 (509)
Q Consensus 54 ~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 133 (509)
.+++|+....|.=+++.-... ...-+..|.......+.+|. ++|++++. ++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccc------------cceeEEEe----ccee
Confidence 367788887777777653321 00011122233356677887 88999998 8889
Q ss_pred EEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccccccc
Q 043890 134 FLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSN 213 (509)
Q Consensus 134 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 213 (509)
+++|+.|-+|+|||+........
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987654332
Q ss_pred ccceeeeeeeeeecccccCeEEEEECCCCC--EEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC
Q 043890 214 ETSLVARCRRVYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 290 (509)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 290 (509)
+..|.+.|+++.|.+.-. .|++| +||.|.+|+...-... ..+.+|.+.|+.++.+|.
T Consensus 79 ------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--------~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 79 ------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--------KSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred ------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------eeecccccccceeEecCC
Confidence 356888999999988754 78888 9999999999865432 367889999999999999
Q ss_pred CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCC
Q 043890 291 HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDS 370 (509)
Q Consensus 291 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~ 370 (509)
+ ++-++.+.|+.+++||+-.++. ...+... .....+.|+|.|.+++.+..+.|-||.+.+ .
T Consensus 139 ~-KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A 199 (362)
T KOG0294|consen 139 G-KLALSVGGDQVLRTWNLVRGRV----AFVLNLK-------------NKATLVSWSPQGDHFVVSGRNKIDIYQLDN-A 199 (362)
T ss_pred C-ceEEEEcCCceeeeehhhcCcc----ceeeccC-------------CcceeeEEcCCCCEEEEEeccEEEEEeccc-H
Confidence 8 9999999999999999998874 2222222 234559999999988888778999999986 4
Q ss_pred CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEE
Q 043890 371 GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQV 445 (509)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 445 (509)
.....+..... +.++.| -++.+|++|++|+.|.+||.++..++. .+.+|...|..+.
T Consensus 200 ~v~~~i~~~~r----------------~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~-~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 200 SVFREIENPKR----------------ILCATF-LDGSELLVGGDNEWISLKDTDSDTPLT-EFLAHENRVKDIA 256 (362)
T ss_pred hHhhhhhcccc----------------ceeeee-cCCceEEEecCCceEEEeccCCCccce-eeecchhheeeeE
Confidence 44443332211 115555 467789999999999999999988887 8888875555553
No 117
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.5e-24 Score=194.94 Aligned_cols=333 Identities=15% Similarity=0.235 Sum_probs=227.9
Q ss_pred eccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccC
Q 043890 25 SQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSH 104 (509)
Q Consensus 25 ~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 104 (509)
.+||...-.....+|++.|.|++.+|.|.+||+|+.||+|+||.+.++++ +..+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-----------------------vr~~--- 438 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-----------------------VRTV--- 438 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-----------------------EEEE---
Confidence 46665444555678999999999999999999999999999999999988 3322
Q ss_pred CcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCcc
Q 043890 105 EPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPY 184 (509)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (509)
..++.|.+|+|+|.++-..||++-... +.|-+..-|..+..... . ..++...
T Consensus 439 ----------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t--~--------ell~~~~------- 490 (733)
T KOG0650|consen 439 ----------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPT--K--------ELLASAP------- 490 (733)
T ss_pred ----------eecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcch--h--------hhhhcCC-------
Confidence 223669999996655665666666554 66655443321111000 0 0000000
Q ss_pred ccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c---CCeEEEEEccC
Q 043890 185 LANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEI 260 (509)
Q Consensus 185 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---dg~i~iwd~~~ 260 (509)
-....+..+..|.-...+..... ++. ...|...|+.+.|+..|.||++. . ...|.|+++..
T Consensus 491 ------------~~~~p~~~~~~W~~~~~~e~~~~--v~~-~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 491 ------------NESEPDAAVVTWSRASLDELEKG--VCI-VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred ------------CccCCcccceeechhhhhhhccc--eEE-EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 00011112334432222111111 112 24578889999999999999986 2 56788998876
Q ss_pred CCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccccc
Q 043890 261 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIAS 340 (509)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (509)
.... ..+....+.|.++.|+|.. .+|++++. ..|++||+....+ ++.+.... ..
T Consensus 556 ~~sQ--------~PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqel----vKkL~tg~------------kw 609 (733)
T KOG0650|consen 556 RKSQ--------SPFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQEL----VKKLLTGS------------KW 609 (733)
T ss_pred cccc--------CchhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHH----HHHHhcCC------------ee
Confidence 5432 2455567889999999997 66666654 5799999988664 23222221 47
Q ss_pred EEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcE
Q 043890 341 ISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLF 419 (509)
Q Consensus 341 i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 419 (509)
|..++.+|.|.-|+.++. +.+..||+....++.+++..|...++ +++|++.-.++++|+.||++
T Consensus 610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr---------------~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR---------------SVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhh---------------hhhhccccceeeeecCCCcE
Confidence 999999999999998874 99999999987889999999988766 89999999999999999999
Q ss_pred EEEeCCC-C--------ceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEc
Q 043890 420 RVFGCAP-G--------STEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWH 490 (509)
Q Consensus 420 ~iw~~~~-~--------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 490 (509)
.||.-.- . -++. .|.+|. ..-.-.|..+.||
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK-~L~gH~---------------------------------------~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLK-RLRGHE---------------------------------------KTNDLGVLDTIWH 714 (733)
T ss_pred EEEeeeeehhhhcCCceEeee-eccCce---------------------------------------eecccceEeeccc
Confidence 9986331 0 1111 333332 1112448999999
Q ss_pred CCCcEEEEEec-CceEEE
Q 043890 491 PTENSIACAAA-NSLYMY 507 (509)
Q Consensus 491 p~~~~la~~~~-~~i~v~ 507 (509)
|...+|.+++. +.|++|
T Consensus 715 P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCceEEecCCCceEEee
Confidence 99999999888 699988
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-24 Score=187.97 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=195.4
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|...|.+++.|+||+|||+|+.|..|.||+.++.+. +..+.+|.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----------------------v~~~~ghr----------- 244 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----------------------VKVFKGHR----------- 244 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccch-----------------------hhcccccc-----------
Confidence 36999999999999999999999999999999999987 67789998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+.|.+++| -.....|++++.|+.|++|+++....+..
T Consensus 245 -~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vet---------------------------------------- 281 (479)
T KOG0299|consen 245 -GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVET---------------------------------------- 281 (479)
T ss_pred -cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHH----------------------------------------
Confidence 88999999 55666899999999999999998766554
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+.+|.+.|.+|....-++.+.+| .|.++++|++....++ .+
T Consensus 282 -----------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql---------if 323 (479)
T KOG0299|consen 282 -----------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL---------IF 323 (479)
T ss_pred -----------------------------HhCCccceeeechhcccceEEeccccceeEEEecccccee---------ee
Confidence 47899999999998888888888 9999999999654433 46
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.++.+.+-|++|-.+ ..|++|+.+|.|.+|++-..+. +.+...............+...|++++..|...++++
T Consensus 324 rg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkp----lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 324 RGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKP----LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred eCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCc----eeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence 778889999999987 5899999999999999988764 3333322111110001122358999999999999999
Q ss_pred ec-CCeEEEEECCCCCCceEEEee--cccccccccccccCCCccceeeEEEcCCCCEEEEe-eCCCcEEEEeC
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQV--HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG-SYSNLFRVFGC 424 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~ 424 (509)
|+ +|.|++|-+..+.+.+..+.. -.+. |++++|+++|+.|++| +....+-=|-.
T Consensus 398 GS~~G~vrLW~i~~g~r~i~~l~~ls~~Gf---------------VNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 398 GSWSGCVRLWKIEDGLRAINLLYSLSLVGF---------------VNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cCCCCceEEEEecCCccccceeeecccccE---------------EEEEEEccCCCEEEEecccccccceeeE
Confidence 97 599999999875444444332 2222 2389999999966655 44444444443
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=196.21 Aligned_cols=262 Identities=18% Similarity=0.198 Sum_probs=185.8
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
.....|.+++|++.|..|++.+.....+|+|.+..+. .+..+ .....+-...-+||.
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~-~e~~K----------GDQYI~Dm~nTKGHi------------ 268 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI-VEFSK----------GDQYIRDMYNTKGHI------------ 268 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCcee-eeeec----------cchhhhhhhccCCce------------
Confidence 3567899999999998877777778899999876554 11000 000001122335666
Q ss_pred ccceeeEEEEcCCC-ceEEEeeCCCeEEEEeccchhhh-hhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 118 EKINKIRWCQTANG-ALFLLSTNDKTIKFWKVQEKKVK-KIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 118 ~~v~~l~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..+++.+| +|+. +.++|++.||++++||++..+.. +++..
T Consensus 269 a~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~------------------------------------ 310 (641)
T KOG0772|consen 269 AELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT------------------------------------ 310 (641)
T ss_pred eeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEee------------------------------------
Confidence 78999999 6654 47899999999999999875421 11110
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
....+..-.++.++|+++|+++|+| .||.|.+|+.......... ..
T Consensus 311 ----------------------------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-----~v 357 (641)
T KOG0772|consen 311 ----------------------------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-----KV 357 (641)
T ss_pred ----------------------------ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-----Ee
Confidence 0013344568899999999999999 9999999998643221111 12
Q ss_pred cCCCcc--ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 275 MEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 275 ~~~~~~--~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
-.+|.. .|++|.|+++| ++|++-+.|+++++||++..+.+ +..+.+-. .. -+-+.++|||+.++
T Consensus 358 k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkp---L~~~tgL~--t~--------~~~tdc~FSPd~kl 423 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKP---LNVRTGLP--TP--------FPGTDCCFSPDDKL 423 (641)
T ss_pred eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccc---hhhhcCCC--cc--------CCCCccccCCCceE
Confidence 355766 89999999999 99999999999999999987642 33322211 11 24577899999999
Q ss_pred EEEec-------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 353 ILSRD-------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 353 l~s~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
|++|+ .+.+.+||..+ ...+..+......+ ..+.|+|.=+.|..|+.||.+++|=
T Consensus 424 i~TGtS~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 424 ILTGTSAPNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEecccccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEE
Confidence 99972 27899999887 55666655443332 2789999988899999999999873
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.3e-24 Score=175.57 Aligned_cols=270 Identities=13% Similarity=0.202 Sum_probs=190.8
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+-|+|+.|++-|+.+|+++.|++|+|||...... ++.....++.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~----------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD----------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC-----------
Confidence 35999999999999999999999999999999865543 455677888998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+.|..+.|....-|+.+|+++.|+++.||.=........
T Consensus 60 -~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~---------------------------------------- 98 (361)
T KOG2445|consen 60 -GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH---------------------------------------- 98 (361)
T ss_pred -CcEEEEEecCccccceEEEEecCCceeeeeecccccccc----------------------------------------
Confidence 889999998667899999999999999998542211000
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeE-----e
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI-----V 268 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~-----~ 268 (509)
-+-| .++..+......|+++.|.|. |-.||++ .||.+|||+.-....+... +
T Consensus 99 --------~~~W------------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 99 --------GRRW------------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred --------ccee------------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 0001 112223556678999999985 6778888 8999999987653321110 0
Q ss_pred eccCCccCCCccceEEEEEeCCC--CcEEEEEEcC-----CeEEEEECCCCcccCCceeeeccccCCCCccccccccccE
Q 043890 269 DVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSK-----GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASI 341 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~~l~~~~~~--~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (509)
..-+.....+..+..|+.|+|.. +.+||.|+.+ +.++||........+.. ...+.+|..+|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k------------va~L~d~~dpI 226 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK------------VAELPDHTDPI 226 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee------------ehhcCCCCCcc
Confidence 00011223466778899999753 3578888876 57888876654321111 12344677899
Q ss_pred EEEEEecC----CCEEEEec-CCeEEEEECCCCCC-------------------ceEEEeecccccccccccccCCCccc
Q 043890 342 SDIKFAKD----GRHILSRD-YMTLKLWDINMDSG-------------------PVATFQVHEYLRPKLCDLYENDSIFD 397 (509)
Q Consensus 342 ~~~~~s~~----~~~l~s~~-~~~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
++++|.|+ -.+||+++ || |+||.+..... .+..+..|.+.+.
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW------------- 292 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW------------- 292 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE-------------
Confidence 99999995 34677775 57 99999884111 1223344544433
Q ss_pred eeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 398 KFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 398 v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
.+.|+-.|..|++.+.||.|++|..+
T Consensus 293 --rv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 293 --RVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred --EEEEeeeeeEEeecCCCceeeehhhh
Confidence 89999999999999999999999876
No 121
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=5.6e-24 Score=177.41 Aligned_cols=292 Identities=15% Similarity=0.221 Sum_probs=199.1
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
-...+.|+|||.-|++-+.|..+.+|++......... ......+.+ .+++--++ ..|.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~------~~~r~~eg-----------~tvy 108 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKH------LSYRYQEG-----------ETVY 108 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccc------eeEEeccC-----------CEEE
Confidence 3457899999999999999999999998643220000 000000000 11111111 4577
Q ss_pred eeEEE-----EcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 122 KIRWC-----QTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 122 ~l~~~-----~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
.-+|. -.|+..++++.+.+.-|++||.-+|+.+.....
T Consensus 109 dy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------- 151 (406)
T KOG2919|consen 109 DYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------- 151 (406)
T ss_pred EEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh-------------------------------------
Confidence 77774 246778999999999999999999986654221
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+|. ...-....+++|+|||..|++|....|+++|+.....-..........-.
T Consensus 152 -----------ydh----------------~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 152 -----------YDH----------------QDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred -----------hhh----------------HHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 110 00112355899999999999998899999999433322221111111123
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+..+-|.+++|+|.....++.++....+-||.-..... +.. +.+|.+.|+.++|.++|+.|++|
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~l------------lggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQL------------LGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eee------------ecccCCCeeeEEeccCcCeeccc
Confidence 34678899999999877999999999998887666553 233 34566999999999999999998
Q ss_pred c--CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC-Cceeeee
Q 043890 357 D--YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP-GSTEATT 433 (509)
Q Consensus 357 ~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~ 433 (509)
. +..|..||++....++..+..|.... +++| -+...|++++|++|+.||.|++||++. |..+. .
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s-v 335 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS-V 335 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCCCccc-c
Confidence 5 58999999998777777777765422 1222 356679999999999999999999997 66565 5
Q ss_pred eccCCCceeEEEEcC
Q 043890 434 LEASKNPMRRQVQTP 448 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~ 448 (509)
+..+..-++.+++.|
T Consensus 336 ~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNP 350 (406)
T ss_pred cccccccccceecCc
Confidence 555554444444443
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=5.8e-24 Score=194.48 Aligned_cols=394 Identities=14% Similarity=0.175 Sum_probs=260.8
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..++||.+.|+++.|+|.+..|++++.|.++.+|..++....-. ....+....|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv----------------~~vRlGe~gg~a-------- 316 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV----------------DVVRLGEVGGSA-------- 316 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEE----------------EEEEeecccccc--------
Confidence 34468999999999999999999999999999999876643000 000011112222
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..-.+..| +|+++.+++-+..|-.++|...+.. .. ....-+-.+......+.|.|+|.++
T Consensus 317 ----~GF~g~lw--~~n~~~ii~~g~~Gg~hlWkt~d~~-~w-----------~~~~~iSGH~~~V~dv~W~psGefl-- 376 (764)
T KOG1063|consen 317 ----GGFWGGLW--SPNSNVIIAHGRTGGFHLWKTKDKT-FW-----------TQEPVISGHVDGVKDVDWDPSGEFL-- 376 (764)
T ss_pred ----cceeeEEE--cCCCCEEEEecccCcEEEEeccCcc-ce-----------eeccccccccccceeeeecCCCCEE--
Confidence 45778888 9999999999999999999932211 11 1112233456667889999999855
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccC------------
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI------------ 260 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~------------ 260 (509)
++.+.+.+-|++-.+..+.. -.+.-| .+-|...++|+++-+..-.|++| ++..+|+|+...
T Consensus 377 ---Lsvs~DQTTRlFa~wg~q~~-wHEiaR--PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~ 450 (764)
T KOG1063|consen 377 ---LSVSLDQTTRLFARWGRQQE-WHEIAR--PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGK 450 (764)
T ss_pred ---EEeccccceeeecccccccc-eeeecc--cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCc
Confidence 66677777777766622221 111111 15677889999998866677888 899999997641
Q ss_pred -------------------------------CCc---eeeE---------e-------------eccCCccCCCccceEE
Q 043890 261 -------------------------------SNQ---SFNI---------V-------------DVKPANMEDLTEVITS 284 (509)
Q Consensus 261 -------------------------------~~~---~~~~---------~-------------~~~~~~~~~~~~~i~~ 284 (509)
+.. ..+. . -.+...+.+|...|++
T Consensus 451 ~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~ 530 (764)
T KOG1063|consen 451 CFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYA 530 (764)
T ss_pred cccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEE
Confidence 000 0000 0 0011245689999999
Q ss_pred EEEeCCCCcEEEEEEcC-----CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C
Q 043890 285 AEFHPTHCNMLAYSSSK-----GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y 358 (509)
Q Consensus 285 l~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~ 358 (509)
++.+|++ +++|+++.. ..|++|+..+-.. .+. +.+|.-.|+.++|||||++|++.+ |
T Consensus 531 l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~----~~~------------L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 531 LAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQ----VQE------------LEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred EEecCCC-CEEeehhhhCCccceEEEEEeccchhh----hhe------------ecccceEEEEEEECCCCcEEEEeecC
Confidence 9999998 999998864 4699998877653 233 344557899999999999999976 6
Q ss_pred CeEEEEECCCCCCc---eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC--ceeee-
Q 043890 359 MTLKLWDINMDSGP---VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG--STEAT- 432 (509)
Q Consensus 359 ~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~- 432 (509)
+++.+|........ ....+.|...+. ++.|+|++.+++|++.|.+|.+|..... +.+..
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIW---------------dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIW---------------DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEE---------------EcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 99999988643222 223455655433 8999999999999999999999999876 44442
Q ss_pred eeccCCCceeEEEEcCCCCCCcccce--------eeEeecC-C----CCCcccCCCc---ccccccceEEEEEcCC----
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSI--------TRVVRRG-S----DVPGVDTNGN---SFDFTTKLLHLAWHPT---- 492 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~--------~~~~~~~-~----~~~~~~~~~~---~~~~~~~i~~~~~~p~---- 492 (509)
....+..+|+.+++.|--.....+-. .-.++.. . ......+... .+.+...|+.+.|.|.
T Consensus 659 a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~ 738 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDD 738 (764)
T ss_pred chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccc
Confidence 34467889999998875443211111 1111111 0 0001111111 1234677999999987
Q ss_pred ----Cc--EEEEEec-CceEEEeC
Q 043890 493 ----EN--SIACAAA-NSLYMYYA 509 (509)
Q Consensus 493 ----~~--~la~~~~-~~i~v~~~ 509 (509)
.. .|++|++ ..+++|+.
T Consensus 739 ~~~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 739 WVEDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred cccccceeEEeeecccceeEEeec
Confidence 23 4577777 78999874
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=6.1e-23 Score=181.09 Aligned_cols=379 Identities=12% Similarity=0.125 Sum_probs=248.5
Q ss_pred ccCcceecccceEEEEECCCCCeEEeecCCC--------eEEEEEccCCCCCCCccccccccccccccCCcceEEeeecc
Q 043890 32 TAGEEVQEVDIISAIEFDKTGDHLATGDRGG--------RVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQS 103 (509)
Q Consensus 32 ~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg--------~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (509)
.+....+|++.|.|++.+|+.-.+|+|..-| .+++||..+... +..+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T-----------------------L~V~g~ 152 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST-----------------------LHVIGF 152 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee-----------------------eeeecc
Confidence 3455678999999999999999999886655 599999765554 334433
Q ss_pred CCcchhhccchhhhccceeeEEEEcCCCceEEEe--eCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccC
Q 043890 104 HEPEFDYLKSLEIEEKINKIRWCQTANGALFLLS--TNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSP 181 (509)
Q Consensus 104 h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (509)
.+ ..|.+++|++...|.+|+.- +.+..+.|||...+..... +.+..+....
T Consensus 153 f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---------------vk~sne~v~~ 205 (626)
T KOG2106|consen 153 FD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---------------VKTSNEVVFL 205 (626)
T ss_pred cc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---------------ceeccceEEE
Confidence 33 67999999755566666655 4467899999987653221 1112222233
Q ss_pred CccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccC
Q 043890 182 KPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 260 (509)
Q Consensus 182 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~ 260 (509)
..|.|.+..+ +...+.+.+.+|+......... ...|-......|.|++|.++|+ +++| ++|.|.||+..+
T Consensus 206 a~FHPtd~nl-----iit~Gk~H~~Fw~~~~~~l~k~---~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 206 ATFHPTDPNL-----IITCGKGHLYFWTLRGGSLVKR---QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT 276 (626)
T ss_pred EEeccCCCcE-----EEEeCCceEEEEEccCCceEEE---eeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC
Confidence 4566655433 3345666788887665443221 1222122235699999999986 5677 999999999976
Q ss_pred CCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCccc-------CCceeeeccc--------
Q 043890 261 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALC-------DSHAILFEEQ-------- 325 (509)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~-------- 325 (509)
.+... ....|.+.|.++..-.+| .|++|+.|+.|..||-.-.++. ..++++....
T Consensus 277 ~~~~k--------~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGT 346 (626)
T KOG2106|consen 277 NRISK--------QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGT 346 (626)
T ss_pred ceEEe--------EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEee
Confidence 54332 233899999999999998 4566999999999994332210 0011111111
Q ss_pred ---------cCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCc
Q 043890 326 ---------EAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSI 395 (509)
Q Consensus 326 ---------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
-.........+|......++.+|+...+++++ |+.+++|+ . .++.-+.......
T Consensus 347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~------------- 410 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA------------- 410 (626)
T ss_pred ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce-------------
Confidence 01111223356788899999999988888865 69999999 3 3554443332221
Q ss_pred cceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc---ceeeEeecCCCCCccc
Q 043890 396 FDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS---SITRVVRRGSDVPGVD 472 (509)
Q Consensus 396 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~ 472 (509)
.++.|+|.| .||.|...|...+.|.++...+. +....+++..+.++|++....++ .....+.....-..+.
T Consensus 411 ---~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~--~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 411 ---ECADFHPSG-VVAVGTATGRWFVLDTETQDLVT--IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred ---eEeeccCcc-eEEEeeccceEEEEecccceeEE--EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 189999999 99999999999999999866664 33348999999999999875443 1122222111111111
Q ss_pred CCCcccccccceEEEEEcCCCcEEEEEecCc
Q 043890 473 TNGNSFDFTTKLLHLAWHPTENSIACAAANS 503 (509)
Q Consensus 473 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 503 (509)
..+. .+..+|+.+.|++|+++|.+-+.+.
T Consensus 485 r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 485 RVGK--CSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred Eeee--ecCceeEEeeecCCCceEEeccCce
Confidence 1111 1247899999999999999888753
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.4e-25 Score=199.28 Aligned_cols=197 Identities=19% Similarity=0.256 Sum_probs=163.1
Q ss_pred ecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCC-ceeeEeeccCCccCCCccceEEEEE-eCCCCcEEEEEEcCC
Q 043890 226 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEF-HPTHCNMLAYSSSKG 302 (509)
Q Consensus 226 ~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~~~l~~~~~dg 302 (509)
+..|.+.|+.+....+++.|+++ .|-+|++|+..... ... ..+..|.+.|.++++ .++. .++|+|+-|+
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~-------stir~H~DYVkcla~~ak~~-~lvaSgGLD~ 140 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM-------STIRTHKDYVKCLAYIAKNN-ELVASGGLDR 140 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------hhhhcccchheeeeecccCc-eeEEecCCCc
Confidence 37899999999999999999999 99999999998764 222 367889999999999 6665 8999999999
Q ss_pred eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeeccc
Q 043890 303 SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 303 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
.|.+||++++... .+..+. .........++..+|.+++..+.|..+++|+ .+.+++||.++ .+.+..+.+|..
T Consensus 141 ~IflWDin~~~~~--l~~s~n---~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLrGHTd 214 (735)
T KOG0308|consen 141 KIFLWDINTGTAT--LVASFN---NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTD 214 (735)
T ss_pred cEEEEEccCcchh--hhhhcc---ccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeeecccc
Confidence 9999999987420 011121 1111122237778999999999998899886 59999999998 677778889988
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
.+. .+-.++||+.+++++.||+|++||+...+++. ++..|...++++..+|+-.+
T Consensus 215 NVr---------------~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~-T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 215 NVR---------------VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA-TYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred ceE---------------EEEEcCCCCeEeecCCCceEEeeeccccceee-eEEeccCceEEEeeCCCcce
Confidence 765 88899999999999999999999999999998 99999999999999876554
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-22 Score=184.72 Aligned_cols=272 Identities=15% Similarity=0.223 Sum_probs=205.5
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
..+|.|++|+...+.||.+-.+|.|.+|++...=. ....+.+++ +..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----------------------~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----------------------LEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce----------------------eeEEEecCC-----------CCc
Confidence 57899999999999999999999999999986533 245666665 278
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
|.+++| . ++.+|++.+.+|.|..||+.+++.+..
T Consensus 72 IE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~~------------------------------------------- 105 (691)
T KOG2048|consen 72 IESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKYN------------------------------------------- 105 (691)
T ss_pred eeeEEE--c-cCCeEEeecCCceEEEEecccCceeEE-------------------------------------------
Confidence 999999 5 566899999999999999998864322
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
.....+.|++++.+|.+..++.| +||.+..++...++-.+.. .+...
T Consensus 106 --------------------------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq 153 (691)
T KOG2048|consen 106 --------------------------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQ 153 (691)
T ss_pred --------------------------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccc
Confidence 13445679999999999999999 9998888877765543332 44455
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY 358 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 358 (509)
.+.|.++.|+|++ ..++.|+.||.|++||...+.... +.+........ .-..-|.++.|-.++ .|++|+.
T Consensus 154 ~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~--~~~~~~d~l~k------~~~~iVWSv~~Lrd~-tI~sgDS 223 (691)
T KOG2048|consen 154 KSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLH--IITMQLDRLSK------REPTIVWSVLFLRDS-TIASGDS 223 (691)
T ss_pred cceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEE--Eeeeccccccc------CCceEEEEEEEeecC-cEEEecC
Confidence 7899999999998 889999999999999999887421 11111111110 011357888887654 5777765
Q ss_pred -CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce---eeeee
Q 043890 359 -MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST---EATTL 434 (509)
Q Consensus 359 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~ 434 (509)
|+|.+||... +.+++....|...+. +++..+++.++++++.|+.|..|...++.. .....
T Consensus 224 ~G~V~FWd~~~-gTLiqS~~~h~adVl---------------~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r 287 (691)
T KOG2048|consen 224 AGTVTFWDSIF-GTLIQSHSCHDADVL---------------ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR 287 (691)
T ss_pred CceEEEEcccC-cchhhhhhhhhccee---------------EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc
Confidence 9999999996 788888888877644 899999999999999999999999876533 11234
Q ss_pred ccCCCceeEEEEcC
Q 043890 435 EASKNPMRRQVQTP 448 (509)
Q Consensus 435 ~~~~~~v~~~~~s~ 448 (509)
..|...+++++..+
T Consensus 288 ~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 288 DLHAHDVRSMAVIE 301 (691)
T ss_pred cCCcccceeeeeec
Confidence 56666666665543
No 126
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=179.22 Aligned_cols=220 Identities=17% Similarity=0.249 Sum_probs=163.0
Q ss_pred cccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 227 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
.+|...-..++|+|-. ..|++| .-+.|++|...++.... ....+.+|...|-.|+|+|....+|++|+.||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 7899889999999943 347888 78899999998866443 2356788999999999999988899999999999
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCC--CCCceEEEeeccc
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEY 381 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~~~~ 381 (509)
+|||+|.+... ... ..++|.+.|+.+.|+..-.+||+|+| |+++|||++. .+.++..++.|..
T Consensus 283 rIWDiRs~~~~--~~~------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKK--AAV------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCcc--cee------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 99999998421 011 12446689999999998889999976 9999999986 3467889999988
Q ss_pred ccccccccccCCCccceeeEEEcCC-CCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceee
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGD-GLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITR 460 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 460 (509)
+++ ++.|+|. ...|++++.|.+|.|||+....-.. ... ......+
T Consensus 349 pIt---------------sieW~p~e~s~iaasg~D~QitiWDlsvE~D~e-e~~--~~a~~~L---------------- 394 (440)
T KOG0302|consen 349 PIT---------------SIEWHPHEDSVIAASGEDNQITIWDLSVEADEE-EID--QEAAEGL---------------- 394 (440)
T ss_pred Cee---------------EEEeccccCceEEeccCCCcEEEEEeeccCChh-hhc--cccccch----------------
Confidence 866 9999985 4578888999999999986321100 000 0000000
Q ss_pred EeecCCCCCcccCCCcc-ccc--ccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 461 VVRRGSDVPGVDTNGNS-FDF--TTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 461 ~~~~~~~~~~~~~~~~~-~~~--~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.++.... |-| .+.|..+.||+.-.-+++.+. +++.||.+
T Consensus 395 ----------~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 395 ----------QDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred ----------hcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 0111111 111 467889999999977777766 99999974
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.2e-24 Score=176.30 Aligned_cols=269 Identities=16% Similarity=0.253 Sum_probs=201.9
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCC-----ccc---cccccc---c------ccccCCcceE
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGG-----SRR---DLERMD---Y------STSRHPEFRY 97 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~-----~~~---~~~~~~---~------~~~~~~~~~~ 97 (509)
...||.+.|+|+.|++.+.++++++.|++-.||...-.-..+. -.. +.+... . ....+.-...
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 3457999999999999999999999999999998432111000 000 000000 0 1111111234
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
+..+.+|. +.|.+..| -..|+.+++++.|.+..+||+++++.+..
T Consensus 265 l~~ltgH~------------~vV~a~dW--L~gg~Q~vTaSWDRTAnlwDVEtge~v~~--------------------- 309 (481)
T KOG0300|consen 265 LMRLTGHR------------AVVSACDW--LAGGQQMVTASWDRTANLWDVETGEVVNI--------------------- 309 (481)
T ss_pred eeeeeccc------------cceEehhh--hcCcceeeeeeccccceeeeeccCceecc---------------------
Confidence 66788887 78999999 78899999999999999999999986554
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
+.+|....+.++-+|..++++++ .|.+.++|
T Consensus 310 ------------------------------------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 310 ------------------------------------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred ------------------------------------------------ccCcchhccccccCCcceEEEEeccCceeEec
Confidence 47888889999999999999999 89999999
Q ss_pred EccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 257 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
|++..-+.. ..+++|...|+++.|.-+. .+++|+.|.+|++||+++.+. ++.++...
T Consensus 342 DFReaI~sV-------~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs---plATIRtd----------- 398 (481)
T KOG0300|consen 342 DFREAIQSV-------AVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS---PLATIRTD----------- 398 (481)
T ss_pred cchhhccee-------eeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccC---cceeeecC-----------
Confidence 999544333 3689999999999999984 799999999999999998763 34444433
Q ss_pred ccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceE----EEeecccccccccccccCCCccceeeEEEcCCC--CE
Q 043890 337 IIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVA----TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG--LR 409 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~ 409 (509)
++++.++.+..++.++.--| ..|++||+.. .+..+ .-++|...+. +++|..+. .-
T Consensus 399 --S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~---------------c~AW~eehp~cn 460 (481)
T KOG0300|consen 399 --SPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVT---------------CCAWLEEHPACN 460 (481)
T ss_pred --CccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeee---------------eeeccccCcccc
Confidence 58899999998888888765 9999999984 33222 2334544433 88897543 34
Q ss_pred EEEeeCCCcEEEEeCCCC
Q 043890 410 VATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~~ 427 (509)
|++++-|..+.=|+++..
T Consensus 461 LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 461 LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccceeeeeEeccc
Confidence 889999999999998753
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=5.8e-23 Score=191.83 Aligned_cols=341 Identities=15% Similarity=0.174 Sum_probs=242.9
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.....++.+.|+++.=+|--..+|.|..+|+|.|+|+..++. +.+|+--.
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-----------------------l~sFk~d~------- 244 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-----------------------LMSFKQDW------- 244 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-----------------------EEEEEccc-------
Confidence 344556789999999999999999999999999999998887 55554333
Q ss_pred chhhhccceeeEEEEcCCCce-EEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 113 SLEIEEKINKIRWCQTANGAL-FLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
+.|++++| ..||.. +++|+..|.+.+||++..+........ +........+.+
T Consensus 245 -----g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na--------------h~~sv~~~~fl~----- 298 (910)
T KOG1539|consen 245 -----GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA--------------HYGSVTGATFLP----- 298 (910)
T ss_pred -----cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc--------------ccCCcccceecC-----
Confidence 78999999 888875 566677899999999987765443210 101111111222
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEEC-CCCCEEEEE-cCCeEEEEEcc----------
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLE---------- 259 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~dg~i~iwd~~---------- 259 (509)
...++++.+.+.++++|-..++++. .+..|.. .||..+..++.|. .+|..+.++ .|++.+.+++.
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 2234456667777888776655543 2223332 6777777777775 456666665 66666655443
Q ss_pred -------------------------------------------------------CCCceeeEeeccCCccCCCccceEE
Q 043890 260 -------------------------------------------------------ISNQSFNIVDVKPANMEDLTEVITS 284 (509)
Q Consensus 260 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (509)
....-. ..+++..+......+++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~--~~L~~~~~~~~~~~~~a 453 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR--HVLDPKRFKKDDINATA 453 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc--EEecCccccccCcceEE
Confidence 111000 01122233334567899
Q ss_pred EEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEE
Q 043890 285 AEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKL 363 (509)
Q Consensus 285 l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~i 363 (509)
++.++.| ++.+.|...|.|-+|+++++-. ...|- .-..|..+|++++...-++.+++++ +|-+++
T Consensus 454 v~vs~CG-NF~~IG~S~G~Id~fNmQSGi~----r~sf~---------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 454 VCVSFCG-NFVFIGYSKGTIDRFNMQSGIH----RKSFG---------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred EEEeccC-ceEEEeccCCeEEEEEcccCee----ecccc---------cCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 9999999 9999999999999999999863 12221 0135678999999999899899876 599999
Q ss_pred EECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 364 WDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 364 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
||... ..++..+....... .+..+.....++.+..|-.|+++|+.+.+.++ .|.+|.
T Consensus 520 w~f~~-k~l~~~l~l~~~~~----------------~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-~f~gh~----- 576 (910)
T KOG1539|consen 520 WDFKK-KVLKKSLRLGSSIT----------------GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-EFWGHG----- 576 (910)
T ss_pred EecCC-cceeeeeccCCCcc----------------eeeeeehhhhhhhhcCceeEEEEEchhhhhhH-Hhhccc-----
Confidence 99996 55566655433221 66777888899999999999999999988887 777775
Q ss_pred EEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 444 QVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 444 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.+|++++|||||++|++++. ++|++|+.
T Consensus 577 --------------------------------------nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 577 --------------------------------------NRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred --------------------------------------cceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 77999999999999999998 89999974
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=194.20 Aligned_cols=272 Identities=15% Similarity=0.235 Sum_probs=203.7
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
...+.++..+++-.-++.++.. .++||.+......... ...+..... ..-.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~-------------------~~~~k~kqn---------~~~S 89 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKC-------------------NHRFKTKQN---------KFYS 89 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcce-------------------eeecccccc---------eeee
Confidence 4566788888998888888765 6888888755441110 011111100 0034
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccch---hhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEK---KVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+..+.|. +-+.++||+++..|.|.+||+... +....
T Consensus 90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~---------------------------------------- 128 (839)
T KOG0269|consen 90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTV---------------------------------------- 128 (839)
T ss_pred hhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhH----------------------------------------
Confidence 6778896 557789999999999999999862 11111
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+..|+..+++++|++. .++|++| .||.|++||++..+.. ..
T Consensus 129 -----------------------------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--------~t 171 (839)
T KOG0269|consen 129 -----------------------------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--------ST 171 (839)
T ss_pred -----------------------------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc--------cc
Confidence 3789999999999885 5678888 9999999999987643 25
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+.+....|+.++|+|..++.|+++...|.+.+||+|....+. . .+.+|.++|.++.|+|++.+||
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~---~------------k~~AH~GpV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE---K------------KLTAHNGPVLCLNWHPNREWLA 236 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH---H------------HhhcccCceEEEeecCCCceee
Confidence 667889999999999887999999999999999999877431 1 2456779999999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCE-EEEee--CCCcEEEEeCCCCcee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR-VATGS--YSNLFRVFGCAPGSTE 430 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iw~~~~~~~~ 430 (509)
+|+ |+.|+|||... .+.......++ +.+|.++.|-|+.++ ||+++ .|-.|+|||+......
T Consensus 237 TGGRDK~vkiWd~t~-~~~~~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTD-SRAKPKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ecCCCccEEEEeccC-CCccceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 987 69999999985 33322222222 222348999998765 56655 4889999999987777
Q ss_pred eeeeccCCCceeEEEEcC
Q 043890 431 ATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~ 448 (509)
..++..|...++.++|-.
T Consensus 302 ~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ceeeeccCccccceeccC
Confidence 779999999999998865
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1e-22 Score=169.54 Aligned_cols=264 Identities=16% Similarity=0.260 Sum_probs=181.2
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
...+++|. +.|++|+| +.||++|++++.|++|++|++.+-....-..
T Consensus 79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~------------------- 125 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRC------------------- 125 (420)
T ss_pred hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhH-------------------
Confidence 34677887 78999999 9999999999999999999998754322110
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINL 255 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~i 255 (509)
+| . .-.-+..+.+.|.||.+-++.. ....+++
T Consensus 126 ---------------------------~R-----------------~--nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 126 ---------------------------IR-----------------Q--NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ---------------------------hh-----------------c--cccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 00 0 0011235678999998776655 6788999
Q ss_pred EEccCCC---ceeeEeeccCC-ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCc
Q 043890 256 WNLEISN---QSFNIVDVKPA-NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSR 331 (509)
Q Consensus 256 wd~~~~~---~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
|.+...+ .....+..... --..|...|..+-....+ .++++++.|..|.+||++ +++ +..++...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~----L~~idtnq----- 228 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQL----LQSIDTNQ----- 228 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cce----eeeecccc-----
Confidence 9876432 11111101100 113466777788887777 999999999999999999 543 34444332
Q ss_pred cccccccccEEEEEEecCCCEEEEecC-CeEEEEECCC--C-----CCceEEEeecccccccccccccCCCccceeeEEE
Q 043890 332 SFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINM--D-----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCL 403 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 403 (509)
..-...+.||+|+++++++. -.|++|.+-- . -..+..+++|...+. .++|
T Consensus 229 -------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~---------------~~aF 286 (420)
T KOG2096|consen 229 -------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL---------------AAAF 286 (420)
T ss_pred -------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee---------------eeee
Confidence 34566789999999999876 8899998632 1 123456788888765 8999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCceee---eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCccccc
Q 043890 404 SGDGLRVATGSYSNLFRVFGCAPGSTEA---TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDF 480 (509)
Q Consensus 404 s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
+++.+.+++.+.||.++|||.+-..... ++|+.... .+. .-
T Consensus 287 sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~--------------------------------pl~----aa 330 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA--------------------------------PLH----AA 330 (420)
T ss_pred CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc--------------------------------chh----hc
Confidence 9999999999999999999987322211 01110000 000 00
Q ss_pred ccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 481 TTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 481 ~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
...-..++.+|.++.||++....+.+|++
T Consensus 331 g~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred CCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 12234899999999999999999998864
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.1e-24 Score=179.80 Aligned_cols=265 Identities=15% Similarity=0.191 Sum_probs=197.3
Q ss_pred cccCCCcc-eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccc
Q 043890 12 AQASPPQP-LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTS 90 (509)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 90 (509)
++++-+.. ..|++++.-. ...+..|.+.|..++++. +.+++++.|.+|+.|.++.. .
T Consensus 83 aSGs~DG~VkiWnlsqR~~---~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p---------------- 140 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQREC---IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-P---------------- 140 (433)
T ss_pred hccccCceEEEEehhhhhh---hheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-c----------------
Confidence 34444444 5699998432 223455999999999987 67788888999999998753 1
Q ss_pred cCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCC
Q 043890 91 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNG 170 (509)
Q Consensus 91 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 170 (509)
..++.+. ..+.+|.- ...+..++|++. .|.|||.+....++.+
T Consensus 141 -------~~tilg~-------------s~~~gIdh--~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm------------- 183 (433)
T KOG0268|consen 141 -------LHTILGK-------------SVYLGIDH--HRKNSVFATCGE--QIDIWDEQRDNPVSSM------------- 183 (433)
T ss_pred -------ceeeecc-------------cccccccc--ccccccccccCc--eeeecccccCCcccee-------------
Confidence 2333333 34556654 445668888886 4999998765543321
Q ss_pred CcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-
Q 043890 171 NVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA- 248 (509)
Q Consensus 171 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~- 248 (509)
.-..+.+.++.|+|.. ..|+++
T Consensus 184 --------------------------------------------------------swG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 184 --------------------------------------------------------SWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred --------------------------------------------------------ecCCCceeEEecCCCcchheeeec
Confidence 1122448899999975 456677
Q ss_pred cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 249 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
+|+.|.+||+++...+..++ ....-+.|+|+|.+ ..|+++++|..+..||++.-.. ++
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi---------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~---p~--------- 265 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI---------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR---PL--------- 265 (433)
T ss_pred cCCceEEEecccCCccceee---------eeccccceecCccc-cceeeccccccceehhhhhhcc---cc---------
Confidence 99999999999877654331 23345689999976 8899999999999999997542 22
Q ss_pred CCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG 407 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 407 (509)
..+.+|.+.|.++.|+|.|+-+++|+ |.+|+||..+. + | ..++|++.+++.|+++.||.|.
T Consensus 266 ---~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~-~--------~------SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 266 ---NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH-G--------H------SRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ---hhhcccceeEEEeccCCCcchhccccccceEEEeecCC-C--------c------chhhhhHhhhheeeEEEEeccc
Confidence 23456678999999999999999998 49999999884 2 2 2456788899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCceee
Q 043890 408 LRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 408 ~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+|+++|++|+.|++|..+..+.+.
T Consensus 328 kyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cEEEecCCCcceeeeecchhhhcC
Confidence 999999999999999987655444
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=179.96 Aligned_cols=234 Identities=19% Similarity=0.168 Sum_probs=183.1
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..+.|.+++- +|+|.+|+.|+..|.|++|.+.+|....+
T Consensus 80 ~Pg~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v--------------------------------------- 118 (476)
T KOG0646|consen 80 LPGPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNV--------------------------------------- 118 (476)
T ss_pred cccceeeeec--CCCceEEEeecccCcEEEEEeccccHHHH---------------------------------------
Confidence 3478999998 89998888888999999999999987765
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc-CC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK-PA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-~~ 273 (509)
+.+|-..|+|+.|+.||.+|++| .||.|.+|.+-.--........+ ..
T Consensus 119 ------------------------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 119 ------------------------------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred ------------------------------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 36788889999999999999999 99999999875321111100011 13
Q ss_pred ccCCCccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 274 NMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
.+..|.-+|+.+...+.+ ...+++++.|.++++||+..+.+. .++..+ ..+.+++.+|.++.
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lti~fp-------------~si~av~lDpae~~ 231 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LTITFP-------------SSIKAVALDPAERV 231 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee----EEEecC-------------CcceeEEEcccccE
Confidence 678899999999998764 258999999999999999999863 333333 57999999999999
Q ss_pred EEEec-CCeEEEEECCCCC---------------CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 353 ILSRD-YMTLKLWDINMDS---------------GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
++.|+ +|.|.+.++.... ..+..+.+|.+. ..|++++++.||.+|++|+.|
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCC
Confidence 99986 5999998876411 012233344431 124499999999999999999
Q ss_pred CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCC
Q 043890 417 NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
|.|+|||+.+.++++ ++....++|+.+.+.|-.+
T Consensus 299 g~VcvWdi~S~Q~iR-tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIR-TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred CCEEEEecchHHHHH-HHhhhccccceeEeecccc
Confidence 999999999999998 8888889999998865433
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.2e-21 Score=179.90 Aligned_cols=269 Identities=12% Similarity=0.154 Sum_probs=182.0
Q ss_pred CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC
Q 043890 52 GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 131 (509)
Q Consensus 52 ~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 131 (509)
++++++++.|+.|++||+.+++. ...+..+. .+.++.| +|++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~~-------------~~~~l~~--~~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVGQ-------------RPRGITL--SKDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECCC-------------CCCceEE--CCCC
Confidence 36788999999999999987765 45555443 3678999 9999
Q ss_pred ceE-EEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccc
Q 043890 132 ALF-LLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTV 210 (509)
Q Consensus 132 ~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 210 (509)
+.+ ++++.++.|++||..+++....
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~------------------------------------------------------ 68 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGT------------------------------------------------------ 68 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEe------------------------------------------------------
Confidence 876 5667789999999987653221
Q ss_pred cccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe
Q 043890 211 TSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 288 (509)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 288 (509)
+..+. .+..++|+|+++.++++ .++.|++||+++.+.... +. +...+.+++|+
T Consensus 69 ---------------~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~--------~~-~~~~~~~~~~~ 123 (300)
T TIGR03866 69 ---------------LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE--------IP-VGVEPEGMAVS 123 (300)
T ss_pred ---------------ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------ee-CCCCcceEEEC
Confidence 01111 24567899999877654 689999999987553321 11 22346789999
Q ss_pred CCCCcEEEEEEcCC-eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEE
Q 043890 289 PTHCNMLAYSSSKG-SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWD 365 (509)
Q Consensus 289 ~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd 365 (509)
|++ .+++++..++ .+.+||.++++. ....... ..+..++|+|++++|+.+ . ++.|++||
T Consensus 124 ~dg-~~l~~~~~~~~~~~~~d~~~~~~----~~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 124 PDG-KIVVNTSETTNMAHFIDTKTYEI----VDNVLVD-------------QRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred CCC-CEEEEEecCCCeEEEEeCCCCeE----EEEEEcC-------------CCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 998 8888887765 577789887653 1211111 245678999999988654 3 59999999
Q ss_pred CCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe-eCCCcEEEEeCCCCceeeeeeccCCCceeEE
Q 043890 366 INMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG-SYSNLFRVFGCAPGSTEATTLEASKNPMRRQ 444 (509)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 444 (509)
+.+ .+.+..+..+...... ... ....++|+|++++++.+ +.++.+.+||+++++.+. .+. +
T Consensus 186 ~~~-~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-~~~-~------- 247 (300)
T TIGR03866 186 VAT-RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-YLL-V------- 247 (300)
T ss_pred cCc-ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-EEE-e-------
Confidence 996 5555555432111000 000 01168899999986544 556789999998877654 221 1
Q ss_pred EEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe--cCceEEEeC
Q 043890 445 VQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA--ANSLYMYYA 509 (509)
Q Consensus 445 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~--~~~i~v~~~ 509 (509)
...+.+++|+|++++|++++ .+.|.+|++
T Consensus 248 ------------------------------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 248 ------------------------------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ------------------------------------CCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 13367888899988888764 378888874
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=7.2e-23 Score=185.68 Aligned_cols=286 Identities=18% Similarity=0.271 Sum_probs=192.0
Q ss_pred EEEECCC---CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 45 AIEFDKT---GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 45 ~v~~s~~---~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
+..|++. ..+||.+..||.|.++|....... ++..-+..+.+|. ..|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----------------~ee~~lk~~~aH~------------nAif 104 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----------------LEERQLKKPLAHK------------NAIF 104 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcc-----------------hhhhhhccccccc------------ceeE
Confidence 4667653 478999999999999998765441 1112235566777 7899
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
.+.| -|-...|++++.|.++++||+.+.++...
T Consensus 105 Dl~w--apge~~lVsasGDsT~r~Wdvk~s~l~G~--------------------------------------------- 137 (720)
T KOG0321|consen 105 DLKW--APGESLLVSASGDSTIRPWDVKTSRLVGG--------------------------------------------- 137 (720)
T ss_pred eecc--CCCceeEEEccCCceeeeeeeccceeecc---------------------------------------------
Confidence 9999 77666899999999999999998764321
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCce---------eeEe--
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS---------FNIV-- 268 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~---------~~~~-- 268 (509)
+ ...+|.+.|.+++|.|.. ..|++| .||.|.|||++..... ....
T Consensus 138 ---------------------~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 138 ---------------------R-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred ---------------------e-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 0 137899999999999975 567788 9999999999854310 0000
Q ss_pred ---eccC-----CccCCCccceEE---EEEeCCCCcEEEEEEc-CCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 269 ---DVKP-----ANMEDLTEVITS---AEFHPTHCNMLAYSSS-KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 269 ---~~~~-----~~~~~~~~~i~~---l~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
..++ .....+...|.+ +.+..|+ ..||+++. |+.|+|||++..... +.... .....+..
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~------~r~ep--~~~~~~~t 266 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTA------YRQEP--RGSDKYPT 266 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccc------cccCC--CcccCccC
Confidence 0000 122334455555 5666776 78998888 999999999987531 11110 00011111
Q ss_pred c---cccEEEEEEecCCCEEEE-ecCCeEEEEECCCCC-CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEE
Q 043890 337 I---IASISDIKFAKDGRHILS-RDYMTLKLWDINMDS-GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA 411 (509)
Q Consensus 337 ~---~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 411 (509)
| .-.+.++.....|.+|++ |.|+.|++||+..-. .++..+.++.... ++ ..-..+||+.+|+
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLL 333 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEe
Confidence 1 246778888877887665 789999999998622 3344444432211 00 0345789999999
Q ss_pred EeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCC
Q 043890 412 TGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 412 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
+|+.|...++|.+.+-+..-..+.+|.-.|+.++|.|+.
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999999999997665544667777565555555543
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.8e-21 Score=171.84 Aligned_cols=270 Identities=13% Similarity=0.273 Sum_probs=187.2
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
..-|.|++|.++|. ++||+++|.|.||+..+.+. .+...+|. +.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------------~k~~~aH~------------gg 289 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------------SKQVHAHD------------GG 289 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------------EeEeeecC------------Cc
Confidence 37899999999997 77899999999999876654 34444887 88
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCC--CCCcc--cCCCCcccCCCCccCCccccCCCCCccee
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNV--DPSKA--VGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
|.+++- -.+| .|++|+.|..|..|| ...+.....+.+. .+++. .+.+.++..+.....+.=+
T Consensus 290 v~~L~~--lr~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt---------- 355 (626)
T KOG2106|consen 290 VFSLCM--LRDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT---------- 355 (626)
T ss_pred eEEEEE--ecCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee----------
Confidence 999998 6777 566799999999999 2222221111111 11111 0011111111000000000
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+. ..... ...+|......++.+|+.+.++++ .|+.+++|+ ..+....
T Consensus 356 --------------~~-------~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt-------- 403 (626)
T KOG2106|consen 356 --------------LE-------NGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT-------- 403 (626)
T ss_pred --------------ec-------CCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE--------
Confidence 00 00001 136888999999999999999998 999999999 2233222
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.....+..++.|+|.| .+|.|...|...+.|.++..+. ++... ..+++.++|+|+|.+||
T Consensus 404 -~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv-----~~~~d------------~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 404 -KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLV-----TIHTD------------NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred -EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeE-----EEEec------------CCceEEEEEcCCCCEEE
Confidence 1235778899999997 8999999999999999986541 11111 15899999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
.|+ |+.|+||.+...++.+.....+.+. +++.+.||+|+++|.+-+.|-.|..|...
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EecCCCeEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCceEEEEEccc
Confidence 997 6999999998766666555444331 13489999999999999999999999543
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.7e-23 Score=180.26 Aligned_cols=238 Identities=16% Similarity=0.245 Sum_probs=182.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.++.. +..+.+|- .
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY------------Q 124 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY------------Q 124 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc------------c
Confidence 368899999999999999999999999999999988 67778888 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|+++.| +.||.+|+||+.||.|.+|.+..--..
T Consensus 125 ~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a-------------------------------------------- 158 (476)
T KOG0646|consen 125 SITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSA-------------------------------------------- 158 (476)
T ss_pred ceeEEEE--eCCCcEEEecCCCccEEEEEEEeeccc--------------------------------------------
Confidence 8999999 999999999999999999998643100
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
..++ ...+.+.| ..|.-+|+++...+. ...++++ .|.++++||+..+..+.++
T Consensus 159 -~~~~--------------~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-------- 214 (476)
T KOG0646|consen 159 -DNDH--------------SVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-------- 214 (476)
T ss_pred -ccCC--------------Cccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE--------
Confidence 0000 01122333 889999999988664 4567887 9999999999988765543
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc--cEEEEEEecCCCEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA--SISDIKFAKDGRHI 353 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l 353 (509)
.....+.+++.+|.+ +.+..|+.+|.|.+.++.........+..-..+........+.+|.+ .|+|++++-||.+|
T Consensus 215 -~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 215 -TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred -ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 246789999999998 99999999999999988764411111111112222333455677777 99999999999999
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccc
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRP 384 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 384 (509)
++|+ ||.|+|||+.+ .++++++....+.++
T Consensus 293 lSGd~dg~VcvWdi~S-~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYS-KQCIRTLQTSKGPVT 323 (476)
T ss_pred EeeCCCCCEEEEecch-HHHHHHHhhhccccc
Confidence 9997 59999999997 677777764444444
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-24 Score=198.05 Aligned_cols=234 Identities=19% Similarity=0.329 Sum_probs=196.1
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|...|.|+..-..++.+++|+.|-.+-||.+..... +..|.+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----------------------i~S~~~he----------- 70 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----------------------ITSLTGHE----------- 70 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCch-----------------------hheeeccC-----------
Confidence 44899999999977899999999999999999887665 56789998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.++.| +++..+|+.|+.+|+|++||++..+....
T Consensus 71 -spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt---------------------------------------- 107 (825)
T KOG0267|consen 71 -SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT---------------------------------------- 107 (825)
T ss_pred -Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh----------------------------------------
Confidence 89999999 88888999999999999999998775543
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+.+|...+..+.|+|-+.+++.| .|..+.+||++...+.. .+
T Consensus 108 -----------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~--------~~ 150 (825)
T KOG0267|consen 108 -----------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH--------TY 150 (825)
T ss_pred -----------------------------hhccccCcceeeeccceEEeccccccccceehhhhccCcee--------ee
Confidence 47888889999999999999999 89999999999766543 56
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.+|...+..+.|+|+| ++++.++.|.+++|||+..+++ ...|..+ .+.+.++.|+|..-++++
T Consensus 151 ~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~----~~ef~~~------------e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKL----SKEFKSH------------EGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred cCCcceeEEEeecCCC-ceeeccCCcceeeeeccccccc----ccccccc------------cccccccccCchhhhhcc
Confidence 6799999999999999 9999999999999999999986 4555544 478999999998888888
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
|+ |+++++||+++ ...+......... |.+..|+|+++.+++|....
T Consensus 214 Gs~d~tv~f~dlet-fe~I~s~~~~~~~---------------v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 214 GSSDRTVRFWDLET-FEVISSGKPETDG---------------VRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCCCceeeeeccce-eEEeeccCCccCC---------------ceeeeecCCceeeecCchhh
Confidence 86 69999999997 3444433332222 33899999999998887653
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.9e-22 Score=164.41 Aligned_cols=245 Identities=14% Similarity=0.220 Sum_probs=183.0
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.....|.++|.+++|+.||..+++|+.|+.+++||+.+++. ..+..|.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------------------------~~v~~Hd-------- 113 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------------------------SQVAAHD-------- 113 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------------------------eeeeecc--------
Confidence 34456999999999999999999999999999999999976 6778888
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
++|..+.|.....-..|+||+.|++|+.||.+....+....+
T Consensus 114 ----~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L---------------------------------- 155 (347)
T KOG0647|consen 114 ----APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL---------------------------------- 155 (347)
T ss_pred ----cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec----------------------------------
Confidence 889999996444456899999999999999986554332111
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
...+.++.. ...+++++ .+..|.+|+++.+...+..
T Consensus 156 ------------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~----- 192 (347)
T KOG0647|consen 156 ------------------------------------PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKR----- 192 (347)
T ss_pred ------------------------------------cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhh-----
Confidence 122333333 33567777 8999999999865433221
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
......-.+++++..++. ...+.|+.+|.+.+..+..+.. +.-.+|..|....... +-.-.|++++|+|....
T Consensus 193 -~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~---~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 193 -IESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVN---DDVYAVNSIAFHPVHGT 265 (347)
T ss_pred -hcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCC---CceEEecceEeecccce
Confidence 112245678999999997 6779999999999999987632 2246777776443311 12247899999998777
Q ss_pred EEE-ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 353 ILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 353 l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
|++ |+||++.+||-+. ...+.....|...++ +++|+.+|.++|.+.
T Consensus 266 lvTaGsDGtf~FWDkda-r~kLk~s~~~~qpIt---------------cc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDA-RTKLKTSETHPQPIT---------------CCSFNRNGSIFAYAL 312 (347)
T ss_pred EEEecCCceEEEecchh-hhhhhccCcCCCccc---------------eeEecCCCCEEEEEe
Confidence 777 5789999999886 556666666776655 999999999988664
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-21 Score=162.91 Aligned_cols=242 Identities=13% Similarity=0.223 Sum_probs=178.0
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|++|.| +|.++.|+.++.||++++|++.....+..
T Consensus 14 d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------------------------- 50 (323)
T KOG1036|consen 14 DGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------------------------- 50 (323)
T ss_pred hceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhhhh-----------------------------------------
Confidence 77999999 88888999999999999999987743332
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
..|..++.+++|.++. .+++| -||.|+.+|+.++... .+.
T Consensus 51 -----------------------------~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~---------~ig 91 (323)
T KOG1036|consen 51 -----------------------------FKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED---------QIG 91 (323)
T ss_pred -----------------------------eecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce---------eec
Confidence 4577889999998754 55566 8999999999987643 567
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE-
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS- 355 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s- 355 (509)
.|..+|.++.+.+.. ..+++|+.|++|++||.+.... ...++.. ..|.++... |..|+.
T Consensus 92 th~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~----~~~~d~~-------------kkVy~~~v~--g~~LvVg 151 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV----VGTFDQG-------------KKVYCMDVS--GNRLVVG 151 (323)
T ss_pred cCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc----ccccccC-------------ceEEEEecc--CCEEEEe
Confidence 899999999999886 8999999999999999997432 2333322 367777664 555666
Q ss_pred ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce---eee
Q 043890 356 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST---EAT 432 (509)
Q Consensus 356 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~ 432 (509)
+.+..+.+||+++...+.+..... .. +.+.++++-|++.-.+.++-||.|.+=.++..+. .+.
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~reS~--lk------------yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQRRESS--LK------------YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ecCceEEEEEcccccchhhhcccc--ce------------eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 567999999999744443221110 00 1123888889888889999999998866665421 122
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.|+.|..... ..+.--+|++|+|||-...||+|+. +-+.+|+.
T Consensus 218 aFkCHr~~~~----------------------------------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 218 AFKCHRLSEK----------------------------------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eEEeeecccC----------------------------------CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 5666652110 0011367999999999999999988 77888874
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=5.3e-21 Score=175.67 Aligned_cols=262 Identities=14% Similarity=0.148 Sum_probs=177.0
Q ss_pred cceEEEEECCCCCeE-EeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 41 DIISAIEFDKTGDHL-ATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 41 ~~I~~v~~s~~~~~l-a~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
..+.+++|+|+++.+ ++++.++.|++||..+++. ...+..+. .
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~-------------~ 74 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP-------------D 74 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------C
Confidence 446789999999876 5677889999999987765 33333332 2
Q ss_pred ceeeEEEEcCCCceEEEe-eCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 120 INKIRWCQTANGALFLLS-TNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
+..+.| +|+++.++++ +.|+.+++||+.+.+....
T Consensus 75 ~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~------------------------------------------ 110 (300)
T TIGR03866 75 PELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAE------------------------------------------ 110 (300)
T ss_pred ccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeE------------------------------------------
Confidence 556778 8999877655 5689999999986542211
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC-CeEEEEEccCCCceeeEeeccCCccC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
..+...+.+++|+|++++++++ .+ ..+.+||.++.+....+
T Consensus 111 ----------------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--------- 153 (300)
T TIGR03866 111 ----------------------------IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--------- 153 (300)
T ss_pred ----------------------------eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------
Confidence 0111235679999999999988 54 45778898765433211
Q ss_pred CCccceEEEEEeCCCCcEE-EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 277 DLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.....+..++|+|++ ++| +++..++.|++||+++++. ...+........ . .......++|+|++++++.
T Consensus 154 ~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~----~-~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 154 LVDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKV----IKKITFEIPGVH----P-EAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred EcCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCccee----eeeeeecccccc----c-ccCCccceEECCCCCEEEE
Confidence 112345679999998 666 4555699999999998764 222221100000 0 0012356889999998655
Q ss_pred e--cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe-eCCCcEEEEeCCCCceeee
Q 043890 356 R--DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG-SYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 356 ~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~ 432 (509)
+ +++.+.+||+++ .+....+.. ...+ .+++|+|+|++|+++ +.++.|.+||+.+++.+.
T Consensus 224 ~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~- 285 (300)
T TIGR03866 224 ALGPANRVAVVDAKT-YEVLDYLLV-GQRV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK- 285 (300)
T ss_pred EcCCCCeEEEEECCC-CcEEEEEEe-CCCc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-
Confidence 3 357899999986 555444322 2222 289999999999886 468999999999999887
Q ss_pred eeccCCCceeEEEEcC
Q 043890 433 TLEASKNPMRRQVQTP 448 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~ 448 (509)
.++....| +.++++|
T Consensus 286 ~~~~~~~~-~~~~~~~ 300 (300)
T TIGR03866 286 SIKVGRLP-WGVVVRP 300 (300)
T ss_pred EEEccccc-ceeEeCC
Confidence 77766444 7777654
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.2e-22 Score=179.25 Aligned_cols=256 Identities=16% Similarity=0.275 Sum_probs=198.0
Q ss_pred eeEEeeccccccccCcc---eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcce
Q 043890 20 LEWKFSQVFGERTAGEE---VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFR 96 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (509)
..|.+.++- .+..... ......|.++.+.|||+-|++|+.-.++.|||+......
T Consensus 443 KVWdis~pg-~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr--------------------- 500 (705)
T KOG0639|consen 443 KVWDISQPG-NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR--------------------- 500 (705)
T ss_pred EEeeccCCC-CCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc---------------------
Confidence 468888873 3332222 235678999999999999999999999999999876540
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSS 176 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (509)
+...+..-. -..++++. +||.+..++++.||.|.|||+.+...+.
T Consensus 501 ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vr--------------------- 545 (705)
T KOG0639|consen 501 IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVR--------------------- 545 (705)
T ss_pred hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeee---------------------
Confidence 012222221 23567777 9999999999999999999998764322
Q ss_pred CCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEE
Q 043890 177 NNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINL 255 (509)
Q Consensus 177 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~i 255 (509)
. +.+|.+.+.||.++++|..|.+| -|++|+.
T Consensus 546 -----------------------------------------------q-fqGhtDGascIdis~dGtklWTGGlDntvRc 577 (705)
T KOG0639|consen 546 -----------------------------------------------Q-FQGHTDGASCIDISKDGTKLWTGGLDNTVRC 577 (705)
T ss_pred -----------------------------------------------c-ccCCCCCceeEEecCCCceeecCCCccceee
Confidence 1 48999999999999999999999 8999999
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT 335 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
||+++++++.. ......|.++.++|.+ .++++|-.++.+.|......+ .+.+..
T Consensus 578 WDlregrqlqq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-----kyqlhl----------- 631 (705)
T KOG0639|consen 578 WDLREGRQLQQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-----KYQLHL----------- 631 (705)
T ss_pred hhhhhhhhhhh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-----ceeecc-----------
Confidence 99998875431 2346789999999998 999999999999888776654 233333
Q ss_pred cccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 336 EIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
|.+-|.++.|++-|+++++. -|+.+-.|.... +..+...+... .|.++.+|.|.+|++||+
T Consensus 632 -heScVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~S----------------sVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 632 -HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESS----------------SVLSCDISFDDKYIVTGS 693 (705)
T ss_pred -cccEEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccC----------------cceeeeeccCceEEEecC
Confidence 44789999999999999985 579999999886 44443333222 134899999999999999
Q ss_pred CCCcEEEEeC
Q 043890 415 YSNLFRVFGC 424 (509)
Q Consensus 415 ~dg~i~iw~~ 424 (509)
.|..-.+|.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888875
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.4e-24 Score=194.36 Aligned_cols=222 Identities=16% Similarity=0.287 Sum_probs=184.1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++.. -..++.+++|+.|..+.+|.+..-....
T Consensus 29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------------------------------ 64 (825)
T KOG0267|consen 29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------------------------------ 64 (825)
T ss_pred hhhceeee--eccceeeccCCCceeeccccccCCchhh------------------------------------------
Confidence 56777776 5677789999999888899875432111
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
. +.+|..+|.++.|++...+|+.| .+|.|++||++..+.. .++.
T Consensus 65 --------------------------S-~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v--------rtLt 109 (825)
T KOG0267|consen 65 --------------------------S-LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV--------RTLT 109 (825)
T ss_pred --------------------------e-eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh--------hhhh
Confidence 0 37899999999999999999999 9999999999976533 3788
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|...+.++.|+|-+ .+++.|+.|..+++||++.... .+.+.. |...+..+.|+|+|++++.+
T Consensus 110 gh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc----~~~~~s------------~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 110 GHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGC----SHTYKS------------HTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred ccccCcceeeeccce-EEeccccccccceehhhhccCc----eeeecC------------CcceeEEEeecCCCceeecc
Confidence 999999999999998 8999999999999999996543 455554 34789999999999999998
Q ss_pred cC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 DY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
++ ..++|||+.. ++.+..|..|+..+. .+.|+|..-+|++|+.|+++++||+++-+.+. ..+
T Consensus 173 ~ed~tvki~d~~a-gk~~~ef~~~e~~v~---------------sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~-s~~ 235 (825)
T KOG0267|consen 173 GEDNTVKIWDLTA-GKLSKEFKSHEGKVQ---------------SLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS-SGK 235 (825)
T ss_pred CCcceeeeecccc-ccccccccccccccc---------------ccccCchhhhhccCCCCceeeeeccceeEEee-ccC
Confidence 65 9999999995 888999998887654 78899999999999999999999999888776 666
Q ss_pred cCCCceeEEEEcCCCCC
Q 043890 436 ASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~ 452 (509)
.....|.+..|.|++..
T Consensus 236 ~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKI 252 (825)
T ss_pred CccCCceeeeecCCcee
Confidence 66677777777776653
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.5e-22 Score=168.49 Aligned_cols=264 Identities=16% Similarity=0.241 Sum_probs=182.1
Q ss_pred ceecccceEEEEECCCC--CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 36 EVQEVDIISAIEFDKTG--DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~--~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+.|.+.|+.+.-++-+ .+.|+=+..|.|+||++...-. .+...+..+.. ...+.+.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---~l~~~~~~~~~----s~~~Pl~t~~ghk-------- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---ALSEPGLEVKD----SEFRPLFTFNGHK-------- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---hhcCccccccc----cccCceEEecccC--------
Confidence 35688888888888754 5666777889999999864322 11111111111 2233367788887
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.=++|.|+|...| .|++|.--+.|++|...++.-..-
T Consensus 212 ----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd------------------------------------- 249 (440)
T KOG0302|consen 212 ----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVD------------------------------------- 249 (440)
T ss_pred ----ccceeeeccccccc-ccccCccccceEeeeeccCceeec-------------------------------------
Confidence 55789999443355 578888888999999987642110
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
. + -+.+|+..|-.++|+|.. ..|++| .||.|+|||+|.+.....+
T Consensus 250 ------------------~----------~-Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~---- 296 (440)
T KOG0302|consen 250 ------------------Q----------R-PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV---- 296 (440)
T ss_pred ------------------C----------c-cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee----
Confidence 0 0 136799999999999974 567888 8999999999987433222
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
....|...|+.|.|+... .+||+|+.||+++|||+|.-+.- .+ ...++.|..+|+++.|+|...
T Consensus 297 --~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~p------------VA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 297 --STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QP------------VATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred --EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-Cc------------ceeEEeccCCeeEEEeccccC
Confidence 347899999999999998 69999999999999999986631 22 334556679999999999543
Q ss_pred --EEEEecCCeEEEEECCCCCC---------------ceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEe
Q 043890 352 --HILSRDYMTLKLWDINMDSG---------------PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATG 413 (509)
Q Consensus 352 --~l~s~~~~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~ 413 (509)
++++|.|.+|.|||+..... +.+.+..|.+... + -.+.|+++- .+|++.
T Consensus 361 s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke----------~---KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 361 SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE----------V---KEVHWHRQIPGLLVST 427 (440)
T ss_pred ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH----------h---hhheeccCCCCeEEEe
Confidence 44445679999999865211 1223333433211 1 178898864 467777
Q ss_pred eCCCc
Q 043890 414 SYSNL 418 (509)
Q Consensus 414 ~~dg~ 418 (509)
+.||.
T Consensus 428 a~dGf 432 (440)
T KOG0302|consen 428 AIDGF 432 (440)
T ss_pred cccce
Confidence 77864
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=9.8e-22 Score=178.41 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=189.3
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.+.|...|..+.|-|-...|++++.|.++++||+...+..+ ...+.||.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------------------~~~~~GH~---------- 144 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------------------GRLNLGHT---------- 144 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------------ceeecccc----------
Confidence 45699999999999976889999999999999999887611 23478888
Q ss_pred hhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 116 IEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|.+++| .++ ...|++|+.||.|.|||+.............
T Consensus 145 --~SvkS~cf--~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~--------------------------------- 187 (720)
T KOG0321|consen 145 --GSVKSECF--MPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN--------------------------------- 187 (720)
T ss_pred --cccchhhh--ccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh---------------------------------
Confidence 88999999 554 4478999999999999998654222111000
Q ss_pred ecCCCCCCCcccccccccc---ccceeeeeeeeeecccccCeEE---EEECCCCCEEEEE--cCCeEEEEEccCCCceee
Q 043890 195 FSFPPGGIPSLRLPTVTSN---ETSLVARCRRVYAHAHDYHINS---ISNNSDGETFISA--DDLRINLWNLEISNQSFN 266 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~---i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~ 266 (509)
++++..+. ..++..+-.+.. ..+...+.+ +.+..|...||++ .|+.|++||++.....++
T Consensus 188 -----------~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 188 -----------RIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred -----------hhhccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 00000000 000000000111 233334444 4455677888887 499999999998765554
Q ss_pred EeeccCCccCCC---ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 267 IVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 267 ~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
........+..| ...+.++.....| .+|.+.+.|+.|.+||+..-.. .++..+...... .--..
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~----------sf~vk 322 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLNS----------SFYVK 322 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCc--CchhhccCcccc----------eeeee
Confidence 322222233334 4567888888888 5565556699999999998653 122222221100 11122
Q ss_pred EEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEE
Q 043890 344 IKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRV 421 (509)
Q Consensus 344 ~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i 421 (509)
-..+||+.++++|+ |...++|.+.+...+...+.+|...++ .++|.|.. .-++++++|..++|
T Consensus 323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt---------------~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 323 SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT---------------TVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE---------------EEeeccccCCCceeeccCcceEE
Confidence 34689999999986 699999999988888888888887755 88887743 34677799999999
Q ss_pred EeCCCC
Q 043890 422 FGCAPG 427 (509)
Q Consensus 422 w~~~~~ 427 (509)
|++..+
T Consensus 388 W~l~~~ 393 (720)
T KOG0321|consen 388 WRLSNG 393 (720)
T ss_pred EeccCc
Confidence 999654
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-22 Score=196.52 Aligned_cols=191 Identities=19% Similarity=0.229 Sum_probs=152.3
Q ss_pred cccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 227 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
..|.+.|..+.|++.. ++||+| +||.|.|||+...+..+.. .-....+.|.+++|+..-..+|++++.+|.+
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 7799999999999975 599999 9999999999986654321 1222467899999998776899999999999
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EEEEe--cC--CeEEEEECCCCCCceEEEeec
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HILSR--DY--MTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~--~~--~~i~iwd~~~~~~~~~~~~~~ 379 (509)
.|||++..+.+ -.+..+.. ...+..++|+|++. .|+++ +| -.|.+||++....+++.+.+|
T Consensus 187 ~iWDlr~~~pi----i~ls~~~~----------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPI----IKLSDTPG----------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCcc----cccccCCC----------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 99999988642 22221110 03478999999865 33333 34 689999999878899999999
Q ss_pred ccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCC
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSR 453 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 453 (509)
...+. ++.|++.+ ++|++++.|+.|.+|+.++++.+. .+.....+...+.|.|..+..
T Consensus 253 ~~Gil---------------slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~-~~p~~~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 253 QRGIL---------------SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG-ELPAQGNWCFDVQWCPRNPSV 311 (1049)
T ss_pred cccee---------------eeccCCCCchhhhcccCCCCeeEecCCCceEee-ecCCCCcceeeeeecCCCcch
Confidence 87754 89999866 899999999999999999999998 888888888888888877753
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=8.5e-21 Score=163.38 Aligned_cols=307 Identities=15% Similarity=0.224 Sum_probs=191.4
Q ss_pred ccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 40 VDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 40 ~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
..+|.++.|.++.. .||||+.|..|++|.+...+.... .....+...+..|. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------c
Confidence 46789999999875 999999999999999987765110 02344567788888 8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|+.+.| +|+|+.|++|+.+|.|.+|....-...
T Consensus 67 aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~-------------------------------------------- 100 (434)
T KOG1009|consen 67 AVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF-------------------------------------------- 100 (434)
T ss_pred eeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc--------------------------------------------
Confidence 8999999 999999999999999999987641110
Q ss_pred CCCCCccccccccc-cccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 199 PGGIPSLRLPTVTS-NETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 199 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+..+ .+........+..+.+|...+..++|+|++++++++ -|+.+++||+..+... ..+.
T Consensus 101 ----------~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~--------~~~~ 162 (434)
T KOG1009|consen 101 ----------DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL--------AILD 162 (434)
T ss_pred ----------cccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE--------eecc
Confidence 0000 000000112223347899999999999999999999 8999999999987644 2578
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCce--eeec--cccCCCCc-ccccc--ccccEEEEEEecC
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA--ILFE--EQEAPGSR-SFFTE--IIASISDIKFAKD 349 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~--~~~~~~~~-~~~~~--~~~~i~~~~~s~~ 349 (509)
.|...+..++|.|-+ +++++-+.|...+.+.+...+...... .... ..+..... ..+.+ ...-...++|+||
T Consensus 163 dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred ccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 899999999999998 999999999877777776654321100 0000 00000000 00000 1134567889999
Q ss_pred CCEEEEec-----CC-----eEEEEECCCCCCceEEEeeccccccc--ccccccCCCccceeeEEE-cCCCCEEEEeeCC
Q 043890 350 GRHILSRD-----YM-----TLKLWDINMDSGPVATFQVHEYLRPK--LCDLYENDSIFDKFECCL-SGDGLRVATGSYS 416 (509)
Q Consensus 350 ~~~l~s~~-----~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d 416 (509)
|.+|++.. .+ ..++|+-..-.++...+......... .+.+|..-+-......-| -|-+..+|.++.
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~- 320 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK- 320 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-
Confidence 99999731 12 34566544333444444332221110 000110000000000011 133344555554
Q ss_pred CcEEEEeCCCCceeeeeeccCC
Q 043890 417 NLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~ 438 (509)
..|+|||.++-.++...-..|.
T Consensus 321 ~svyvydtq~~~P~~~v~nihy 342 (434)
T KOG1009|consen 321 NSVYVYDTQTLEPLAVVDNIHY 342 (434)
T ss_pred ceEEEeccccccceEEEeeeee
Confidence 4899999988877774444444
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.9e-20 Score=156.83 Aligned_cols=324 Identities=14% Similarity=0.171 Sum_probs=212.8
Q ss_pred eecccceEEEEECC-----CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 37 VQEVDIISAIEFDK-----TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 37 ~~h~~~I~~v~~s~-----~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
..|..+|..++|++ +-..+|+.+.+ .+.+|+....-. .+.++.+...
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~--------------------ir~lq~y~D~------- 86 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG--------------------IRLLQSYADE------- 86 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc--------------------eeeeeeccCC-------
Confidence 35889999999996 24678887755 789998865432 0112222211
Q ss_pred cchhhhccceeeEEEEcCC--CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCC
Q 043890 112 KSLEIEEKINKIRWCQTAN--GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
+++..-..++|+.... ..++|.|+.-|.|+|.|+.++++...
T Consensus 87 ---d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~--------------------------------- 130 (385)
T KOG1034|consen 87 ---DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN--------------------------------- 130 (385)
T ss_pred ---CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc---------------------------------
Confidence 2226678888863332 45888899999999999998765432
Q ss_pred CCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeE
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~ 267 (509)
+.+|...|+.|.+.|+. ++++++ .|..|++|++++..++.-+
T Consensus 131 ------------------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 131 ------------------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ------------------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 37899999999999975 678888 8999999999987765443
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccC--CceeeeccccC----C---CCcc---ccc
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCD--SHAILFEEQEA----P---GSRS---FFT 335 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~----~---~~~~---~~~ 335 (509)
.-..+|.+.|.++.|++++ .++++++.|.+|++|++...+... +....+..... + .+.. +-.
T Consensus 175 -----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 175 -----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred -----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 3568899999999999999 899999999999999999554211 11111111110 0 1111 123
Q ss_pred cccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 336 EIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
-|...|.|+.|- |.++++- .++.|..|-...-.+.+...+..+...+.+..+.-..+-..-...+|.|-++.||.|.
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 466777777775 5788884 4689999987221222222222222222211111111111112567888899999999
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN 494 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 494 (509)
..|.|++||++..++...+ .+.-+. -...|.+.+|+.|+.
T Consensus 327 q~g~v~vwdL~~~ep~~~t---------tl~~s~-------------------------------~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCT---------TLTHSK-------------------------------SGSTVRQTSFSRDGS 366 (385)
T ss_pred CCCcEEEEECCCCCCccCc---------eEEecc-------------------------------ccceeeeeeecccCc
Confidence 9999999999976653201 110000 035689999999998
Q ss_pred EEEEEec-CceEEEe
Q 043890 495 SIACAAA-NSLYMYY 508 (509)
Q Consensus 495 ~la~~~~-~~i~v~~ 508 (509)
+|+..++ +.+.-|+
T Consensus 367 ~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEEEeCCCcEEEEE
Confidence 8776665 7777775
No 148
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=5.9e-21 Score=175.08 Aligned_cols=231 Identities=17% Similarity=0.275 Sum_probs=184.4
Q ss_pred eecccceEE-EEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 37 VQEVDIISA-IEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 37 ~~h~~~I~~-v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+|.+-|.+ +++-+ ++-.|.+|+.|..|.+|.+....+ ...+.+|+
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P-----------------------~~~LkgH~--------- 101 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP-----------------------LYTLKGHK--------- 101 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecCCCCc-----------------------hhhhhccc---------
Confidence 347777777 88885 556799999999999999998887 78899999
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.++.. ..++. +++||.|.++++|....-...
T Consensus 102 ---snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~---------------------------------------- 135 (745)
T KOG0301|consen 102 ---SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS---------------------------------------- 135 (745)
T ss_pred ---cceeeeec--CCcCc-eEecccccceEEecchhhhcc----------------------------------------
Confidence 78999987 66665 999999999999997543210
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
+.+|+..|+++..-|++ .+++| .|..|++|.-.+.. .
T Consensus 136 -------------------------------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l----------~ 173 (745)
T KOG0301|consen 136 -------------------------------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLL----------K 173 (745)
T ss_pred -------------------------------cCCcchheeeeeecCCC-cEEeccCcceeeeccCCchh----------h
Confidence 38899999999999988 77777 99999999864322 3
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+.+|.+.|+++++-+++ .|++++.||.|++|++.... +..+. +|.+-+.+++...++..+
T Consensus 174 tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~-----l~~~~------------ghtn~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 174 TFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEV-----LLEMH------------GHTNFVYSISMALSDGLI 234 (745)
T ss_pred hhccchhheeeeEEecCC--CeEeecCCceEEEEeccCce-----eeeee------------ccceEEEEEEecCCCCeE
Confidence 788999999999999984 69999999999999995443 33333 455889999977777888
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
++++ |++++||+.. .+.+.+.-....+. ++++-++|. +++|+.||.||||...
T Consensus 235 vs~gEDrtlriW~~~---e~~q~I~lPttsiW---------------sa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD---ECVQVITLPTTSIW---------------SAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCceEEEeecC---ceEEEEecCccceE---------------EEEEeeCCC-EEEeccCceEEEEEec
Confidence 8765 6999999976 56666654443322 777777777 6679999999999876
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-19 Score=164.56 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=157.1
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
....|..++|++.+ .|.+.+.+|.|.-||+.+.+. ...+.... +
T Consensus 68 ~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~-----------------------~~~~d~~g------------g 111 (691)
T KOG2048|consen 68 EDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQ-----------------------KYNIDSNG------------G 111 (691)
T ss_pred CCCceeeEEEccCC-eEEeecCCceEEEEecccCce-----------------------eEEecCCC------------c
Confidence 45789999999555 577777899999999999887 44555444 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.+|+. +|.+..++.|+.||.+..++...++....
T Consensus 112 ~IWsiai--~p~~~~l~IgcddGvl~~~s~~p~~I~~~------------------------------------------ 147 (691)
T KOG2048|consen 112 AIWSIAI--NPENTILAIGCDDGVLYDFSIGPDKITYK------------------------------------------ 147 (691)
T ss_pred ceeEEEe--CCccceEEeecCCceEEEEecCCceEEEE------------------------------------------
Confidence 7999999 88888999999999888777776653221
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+. +...++.+.+++|+|++..+++| .||.|++||..++.... +..++.-.+..
T Consensus 148 ------------------------r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k 201 (691)
T KOG2048|consen 148 ------------------------RS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSK 201 (691)
T ss_pred ------------------------ee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eeeeccccccc
Confidence 11 24446779999999999999999 99999999999877554 22222222222
Q ss_pred -CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 278 -LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 278 -~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
...-|.++.|-.++ .+++|...|+|.+||...+.+ +..+.. |...|.+++.++++.+++++
T Consensus 202 ~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTL----iqS~~~------------h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 202 REPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTL----IQSHSC------------HDADVLALAVADNEDRVFSA 263 (691)
T ss_pred CCceEEEEEEEeecC--cEEEecCCceEEEEcccCcch----hhhhhh------------hhcceeEEEEcCCCCeEEEc
Confidence 34467888888774 899999999999999999876 233333 44789999999998888886
Q ss_pred c-CCeEEEEECCCC
Q 043890 357 D-YMTLKLWDINMD 369 (509)
Q Consensus 357 ~-~~~i~iwd~~~~ 369 (509)
+ |+.|.-|...+.
T Consensus 264 Gvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTN 277 (691)
T ss_pred cCCCceEEEEecCC
Confidence 5 788888877653
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-20 Score=165.55 Aligned_cols=286 Identities=13% Similarity=0.138 Sum_probs=202.3
Q ss_pred ceeEEeeccccccccCcceecccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceE
Q 043890 19 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRY 97 (509)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (509)
-..|+++..-+++.-.+.. -.-.+.++.|+.... .+|+.+.|..+++|.-..... +...
T Consensus 14 ~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~-------------------~Vp~ 73 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP-------------------EVPR 73 (673)
T ss_pred eEEeecccccCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCCC-------------------ccce
Confidence 3457776544322221111 112389999997763 334445677899997654421 1111
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
.....+.. ...|.+..+ ..|+++|+..+.|+|||+....+.+.
T Consensus 74 ~~k~~gd~-----------~~Cv~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr~--------------------- 116 (673)
T KOG4378|consen 74 VRKLTGDN-----------AFCVACASQ-----SLYEISGGQSGCVKIWDLRAKLIHRF--------------------- 116 (673)
T ss_pred eeccccch-----------HHHHhhhhc-----ceeeeccCcCceeeehhhHHHHHhhh---------------------
Confidence 22222222 123444444 47999999999999999985443322
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
+.+|...|+++.++....++|++ ..|.|.|.
T Consensus 117 ------------------------------------------------lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 117 ------------------------------------------------LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIH 148 (673)
T ss_pred ------------------------------------------------ccCCcceeEEEEecCCcceeEEeccCCcEEEE
Confidence 47899999999999999999999 89999999
Q ss_pred EccCCCceeeEeeccCCccCCC-ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc
Q 043890 257 NLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT 335 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
.+.++.... .+... ...|.-+.|+|....+|.+++.+|.|.+||...... +..+ ..
T Consensus 149 ~~~t~~~tt--------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~-----------~~ 205 (673)
T KOG4378|consen 149 GTKTKQKTT--------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHA-----------SE 205 (673)
T ss_pred ecccCcccc--------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccch-----------hh
Confidence 998876432 23222 345678999999867788999999999999987652 2222 34
Q ss_pred cccccEEEEEEecCCCEEE-E-ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 043890 336 EIIASISDIKFAKDGRHIL-S-RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG 413 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~-s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 413 (509)
.|..+...++|+|.+..|+ + |-|..|.+||.+. .+....+...... . .++|+++|.+|+.|
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl-s---------------tvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL-S---------------TVAFSECGTYLCAG 268 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc-c---------------eeeecCCceEEEee
Confidence 4668999999999766554 4 4479999999996 5666665543322 1 89999999999999
Q ss_pred eCCCcEEEEeCCC-CceeeeeeccCCCceeEEEEcCCC
Q 043890 414 SYSNLFRVFGCAP-GSTEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 414 ~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
...|.|+.||++. ..++. ++.+|...|++++|.|..
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~-v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVA-VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCce-EeeecccceeEEEeeecc
Confidence 9999999999985 45565 999999999999998763
No 151
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=1.9e-20 Score=154.18 Aligned_cols=209 Identities=14% Similarity=0.223 Sum_probs=155.9
Q ss_pred cccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCc-eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 227 HAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 227 ~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
..+..++++..|+. +-+++.++ -|-+..|||++++.. ..+ ..+-+|...|..++|...+.++||+.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk------TQLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK------TQLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee------eEEEecCcceeEEEeccCccceEEEecCCCc
Confidence 34557899999976 45677777 799999999998622 111 2567899999999999988789999999999
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEE-ecC-CeEEEEECCCCCCceEEEeecc
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILS-RDY-MTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
+|+||+|...- ..-.++.+.. ..+...++|++. -+++|+ +.| ..|.|.|++.+..++..+..|.
T Consensus 221 vRmFDLR~leH---STIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 221 VRMFDLRSLEH---STIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred EEEEEeccccc---ceEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 99999998652 1122332221 147888999884 457776 445 8999999999999999999999
Q ss_pred cccccccccccCCCccceeeEEEcCC-CCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccccee
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLSGD-GLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSIT 459 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 459 (509)
+.+. .++|.|. ...|++++.|.++.|||+.+.-.. ....|+.. +
T Consensus 288 a~VN---------------gIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPila--y------------- 332 (364)
T KOG0290|consen 288 ASVN---------------GIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPILA--Y------------- 332 (364)
T ss_pred cccc---------------ceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCchhh--h-------------
Confidence 8866 8999996 468999999999999999853210 11111110 0
Q ss_pred eEeecCCCCCcccCCCcccccccceEEEEEcCC-CcEEEEEecCceEEEe
Q 043890 460 RVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPT-ENSIACAAANSLYMYY 508 (509)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~la~~~~~~i~v~~ 508 (509)
.-..+|+.+.|+|. ..+++++.++++.+..
T Consensus 333 -------------------~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 333 -------------------TAGGEVNQIQWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred -------------------hccceeeeeeecccCCCEEEEEecCeeeEEe
Confidence 11467999999976 5899999998887754
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=2.1e-21 Score=157.65 Aligned_cols=304 Identities=11% Similarity=0.144 Sum_probs=199.6
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+|.+.|+++.|..+++ |.+|..-|.|++|++.+.+. ...+++|..
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~-----------------------~~~~r~~g~----------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD-----------------------LPLIRLFGR----------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCcc-----------------------chhhhhhcc-----------
Confidence 5899999999998876 88899999999999998877 455553321
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|+.+.- -|+ ..+.+-+.|+.+.+|++..+....+.....+ ...++...+++.++........
T Consensus 57 ~~it~lq~--~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~n-------------slgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 57 LFITNLQS--IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVN-------------SLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ceeeceee--cCC-cchhhcCCCceEEEEEccCcceEEEeeeecc-------------ccccccceeccCCCcchhheec
Confidence 56888887 565 5789999999999999987655444332222 2222333333333322111111
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCC--EEEEE-cCCeEEEEEccCCCceeeEeec--c
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGE--TFISA-DDLRINLWNLEISNQSFNIVDV--K 271 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~--~l~~~-~dg~i~iwd~~~~~~~~~~~~~--~ 271 (509)
.+.+...+..-|........... .-..+..+.+.+..+.- .+. +++.| ++|.+.+||+.++...+.+... .
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~d---d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv 197 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIAD---DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV 197 (323)
T ss_pred CCcccchhhhhccCccceeEccC---chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc
Confidence 11111111111111110000000 00123345566666532 232 35567 8999999999987543322110 0
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
......|..+|.++.|.+.- ..=++|+.+..+..|.++............... ...+..+..-||++
T Consensus 198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk------------npGv~gvrIRpD~K 264 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLK------------NPGVSGVRIRPDGK 264 (323)
T ss_pred ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEec------------CCCccceEEccCCc
Confidence 12445689999999999875 677888888899999987652111111111111 14789999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
.+|+++ |++||||..++ ..++..++.|...+. +++|+|+...+|.+++|++|.+|++
T Consensus 265 IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn---------------~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVN---------------AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEecc-CCchhhhhhhhccee---------------EEEeCCCCchhhhccCCceEEeeec
Confidence 999976 79999999997 799999999987755 9999999999999999999999986
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.2e-21 Score=166.39 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=185.2
Q ss_pred cccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
..-+|.+++|.|+|. .+++++.-..++.||+.+.+.. . +....+++ +
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~--k-------------------~~~~~g~e-----------~ 303 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT--K-------------------LKPPYGVE-----------E 303 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccc--c-------------------ccCCCCcc-----------c
Confidence 457999999999998 9999999999999999887750 0 12223332 1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..+..... ++++++|+.++..|.|.+....+++.+..++
T Consensus 304 ~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s~K--------------------------------------- 342 (514)
T KOG2055|consen 304 KSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITSFK--------------------------------------- 342 (514)
T ss_pred chhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhheee---------------------------------------
Confidence 34666666 8999999999999999999988887554322
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
-.+.|..++|+.+++.|+.+ .+|.|.+||++......+.. .
T Consensus 343 -------------------------------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-------D 384 (514)
T KOG2055|consen 343 -------------------------------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-------D 384 (514)
T ss_pred -------------------------------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-------e
Confidence 23458899999999888877 99999999999875443321 1
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.-.-.-++++.++++ .+||+|+..|.|.|||.++... ...+.+...+..-...|+++.|++|.++||.+
T Consensus 385 ~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 385 DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 111123577888998 8999999999999999776431 11112222233334689999999999999987
Q ss_pred c---CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 357 D---YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 357 ~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+ ...+++-.+.+ ......+.... ..+..|++++|||.+.+||.|.++|.+.+|.+.
T Consensus 454 S~~~knalrLVHvPS-~TVFsNfP~~n------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPS-CTVFSNFPTSN------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhccccceEEEeccc-eeeeccCCCCC------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5 37899888875 33333333322 334446699999999999999999999999875
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=7e-20 Score=166.40 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=109.7
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEEec-C
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILSRD-Y 358 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~-~ 358 (509)
.|+.+.|+|-....|++++.||.|++|.+..+.+. .........++.|...|+++.|+|- ...|++++ |
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~---------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP---------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCC---------cccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 46777788866688999999999999999987641 1112223567888899999999993 44666665 5
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
.+|++||+++ ......+.+|...+ +.++|||||+.+|+.+.||+|++|+..+++...+.-++..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999997 78888899998764 3999999999999999999999999987765421222211
Q ss_pred C-ceeEEEEcCCCCCC
Q 043890 439 N-PMRRQVQTPSRPSR 453 (509)
Q Consensus 439 ~-~v~~~~~s~~~~~~ 453 (509)
+ .--.+.|.-+++..
T Consensus 764 gtRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIV 779 (1012)
T ss_pred cCcceeEEEEecCcEE
Confidence 1 11245565555543
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6e-20 Score=173.89 Aligned_cols=269 Identities=14% Similarity=0.197 Sum_probs=192.2
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..-+.|+| .++|+.|++++.||.|++|+.........
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~----------------------------------------- 50 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPE----------------------------------------- 50 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCc-----------------------------------------
Confidence 66889999 99999999999999999999765421000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
....+...|.+++. .+++|+++ .+++|.+|.+..+..-. .+.
T Consensus 51 ---------------------------ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~--------iL~ 93 (933)
T KOG1274|consen 51 ---------------------------TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDT--------ILA 93 (933)
T ss_pred ---------------------------hhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccc--------eee
Confidence 00114445666664 44588888 99999999998766321 234
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
...-+++.++++.+| +++|.|+.|-.|++-++..... .+.+.+ |.++|.++.|+|++.+||+.
T Consensus 94 Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~----~~~lrg------------h~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQ----EKVLRG------------HDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred eeeccceEEEEecCC-cEEEeecCceeEEEEeccccch----heeecc------------cCCceeeeeEcCCCCEEEEE
Confidence 456789999999998 9999999999999999887763 344444 45899999999999999997
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
+ +|.|+|||+.+ +.+..++.+-...-. +.. .++ +..++|+|+|..|+....|+.|.+|+....+... .|.
T Consensus 157 s~dG~v~iw~~~~-~~~~~tl~~v~k~n~----~~~-s~i--~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f-~Lr 227 (933)
T KOG1274|consen 157 SCDGKVQIWDLQD-GILSKTLTGVDKDNE----FIL-SRI--CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF-KLR 227 (933)
T ss_pred ecCceEEEEEccc-chhhhhcccCCcccc----ccc-cce--eeeeeecCCCCeEEeeccCCeEEEEccCCceehe-eec
Confidence 5 79999999996 566555544221100 000 111 1278999998889999999999999999888777 443
Q ss_pred --cCCCceeEEEEcCCCCCCcccc---eeeEeecCCCCCcccCCCccc-ccccceEEEEEcCCCcEEEEEec
Q 043890 436 --ASKNPMRRQVQTPSRPSRSLSS---ITRVVRRGSDVPGVDTNGNSF-DFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 436 --~~~~~v~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
.+...+..+.|+|.|.+...+. ...+|+... +.. .+...|.+++|.|+.+.+-+-..
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t---------~~~~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT---------HERHEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc---------chhccccceeEEEecCCCCCeeEEEee
Confidence 2334478888888887754432 233443222 111 24677888999998877765544
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.3e-20 Score=153.40 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=181.6
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+-|+++.| ...|+++|+|+.|++|+|||.........
T Consensus 14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------------------------------------- 50 (361)
T KOG2445|consen 14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWS----------------------------------------- 50 (361)
T ss_pred ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceE-----------------------------------------
Confidence 67999999 89999999999999999999754321110
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEE-cCCeEEEEEccCC--CceeeEeeccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEIS--NQSFNIVDVKP 272 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~dg~i~iwd~~~~--~~~~~~~~~~~ 272 (509)
+... -+.|.+.|..+.|.+ -|+.+|++ .|+++.||.-... +..-. .-.+.
T Consensus 51 -----------------------~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~-~Wv~~ 105 (361)
T KOG2445|consen 51 -----------------------CTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR-RWVRR 105 (361)
T ss_pred -----------------------Eeee-EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc-eeEEE
Confidence 1111 277899999999954 38999999 8999999976321 11000 00112
Q ss_pred CccCCCccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccc-cCCCCccccccccccEEEEEEecC-
Q 043890 273 ANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQ-EAPGSRSFFTEIIASISDIKFAKD- 349 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~- 349 (509)
..+......|+.+.|.|.. +-.||+++.||.+|||+.-.... +..+... +..........+..+..|+.|+|.
T Consensus 106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n----Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr 181 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN----LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR 181 (361)
T ss_pred EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc----cccchhhhhhhhccCCcccccCcceEEeecccc
Confidence 3556678899999999964 26899999999999998765431 1111111 111111112234467899999983
Q ss_pred --CCEEEEecCC------eEEEEECCCCCC---ceEEEeecccccccccccccCCCccceeeEEEcCCC----CEEEEee
Q 043890 350 --GRHILSRDYM------TLKLWDINMDSG---PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG----LRVATGS 414 (509)
Q Consensus 350 --~~~l~s~~~~------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~ 414 (509)
..+||.|++. .++||......+ .+..+.+|..+++ +++|.|+- ..||+++
T Consensus 182 ~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~---------------di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 182 MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR---------------DISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce---------------eeeeccccCCceeeEEEee
Confidence 4588888654 899998876442 2345556666554 99999963 4799999
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN 494 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 494 (509)
.|| |+||+++...... .-+.-. .|+.... ++ ..+.+..-+|..+|..+.|+-.|.
T Consensus 247 kDg-v~I~~v~~~~s~i-~~ee~~--------~~~~~~~--------------l~-v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAI-EEEEVL--------APDLMTD--------------LP-VEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred cCc-EEEEEEeeccchh-hhhccc--------CCCCccc--------------cc-eEEeeeccCCCCceEEEEEeeeee
Confidence 999 9999998422110 000000 0000000 00 001111114678999999999999
Q ss_pred EEEEEec-CceEEEeC
Q 043890 495 SIACAAA-NSLYMYYA 509 (509)
Q Consensus 495 ~la~~~~-~~i~v~~~ 509 (509)
.|++.++ |.+++|.+
T Consensus 302 iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEeecCCCceeeehhh
Confidence 9997777 89999853
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.4e-20 Score=155.33 Aligned_cols=220 Identities=18% Similarity=0.195 Sum_probs=166.6
Q ss_pred ecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCc---ee----eEeeccCCccCCCccceEEEEEeCCCCcEEE
Q 043890 226 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ---SF----NIVDVKPANMEDLTEVITSAEFHPTHCNMLA 296 (509)
Q Consensus 226 ~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~ 296 (509)
...|.+.|+++...+ .|+++++| .||.|.+||++.... .. ....+......+|...|.++.|-|-..-+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 367899999999987 58999999 999999999986431 00 0011122345678999999999997767999
Q ss_pred EEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC---CCEEEEecC-CeEEEEECCCCCCc
Q 043890 297 YSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD---GRHILSRDY-MTLKLWDINMDSGP 372 (509)
Q Consensus 297 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~ 372 (509)
+++.|.++++||.++.+. ...|.-+ +.|.+-+++|- ..++|+|.+ -+|++.|+.+ +..
T Consensus 119 ssSFDhtlKVWDtnTlQ~----a~~F~me-------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~ 180 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE----AVDFKME-------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSF 180 (397)
T ss_pred cccccceEEEeeccccee----eEEeecC-------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccC-Ccc
Confidence 999999999999998774 3444433 46888888883 346666765 8999999997 789
Q ss_pred eEEEeecccccccccccccCCCccceeeEEEcCCCCE-EEEeeCCCcEEEEeCCCC-ceeeeeeccCCCceeEEEEcCCC
Q 043890 373 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR-VATGSYSNLFRVFGCAPG-STEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
..++.+|.+.+. ++.|+|...+ |++|+.||.|++||++.. -+.. .+..|... ..|.
T Consensus 181 sH~LsGHr~~vl---------------aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~-~lD~hn~k-----~~p~- 238 (397)
T KOG4283|consen 181 SHTLSGHRDGVL---------------AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR-VLDQHNTK-----RPPI- 238 (397)
T ss_pred eeeeccccCceE---------------EEEeccCceeEEEecCCCceEEEEEeecccceeE-EeecccCc-----cCcc-
Confidence 999999988754 9999998775 778999999999999854 4454 77777631 0110
Q ss_pred CCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 451 PSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
++ ....|...|+.++|..++.++++++. +.+++|+
T Consensus 239 ----------------------~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 239 ----------------------LK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ----------------------cc-ccccccceeeeeeecccchhhhhccCccceEEee
Confidence 01 12235678999999999999987666 8999997
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=9.2e-20 Score=158.83 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=131.5
Q ss_pred cccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 227 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
.+|+..|..++|+.. .+.||+| .|.+|.+||+.++++.. .+..|...|.+++|+|..+.+|++|+.|++|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 579999999999876 4678888 89999999999988653 4567999999999999999999999999999
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE-EEec-CCeEEEEECCCCCCceEEEeecccc
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI-LSRD-YMTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
.+.|+|..... -..+... +.|-.++|.|..... +++. ||.|+-+|++..++++.+++.|...
T Consensus 312 ~l~D~R~~~~s---~~~wk~~-------------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 312 ALKDCRDPSNS---GKEWKFD-------------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EeeeccCcccc---CceEEec-------------cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 99999953211 1223322 579999999976543 3444 5999999999988999999999988
Q ss_pred cccccccccCCCccceeeEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGD-GLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~ 426 (509)
+. ++++++. ..+|+|++.|+.|++|++..
T Consensus 376 IS---------------gl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 376 IS---------------GLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred cc---------------eEEecCCCCcceeeccccceEEEEeecC
Confidence 76 7888764 45788999999999999873
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=159.79 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=208.4
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|+++.|+.++++||+|+.|..++||+++..-. .+ .| +.+ .+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-~k--------------~~--KPI-~~~~~~---------- 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-RK--------------TP--KPI-GVMEHP---------- 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-hc--------------CC--CCc-eeccCc----------
Confidence 356999999999999999999999999999999874322 00 00 001 222322
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
|...|.+++| ......+++|..+++|...|+++.+.+-++.
T Consensus 104 H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~------------------------------------- 144 (609)
T KOG4227|consen 104 HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVAN------------------------------------- 144 (609)
T ss_pred cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeec-------------------------------------
Confidence 1167999999 8888899999999999999999875332211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
-....+.|..+..+|..+.|++. .++.|.+||.+.......++ -
T Consensus 145 ------------------------------~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~ 189 (609)
T KOG4227|consen 145 ------------------------------ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----L 189 (609)
T ss_pred ------------------------------ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----e
Confidence 02233579999999999999998 99999999999755333221 2
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+........++.|+|..+.+|++.+..+-+.+||++..... +....... . +......-+++.|+|+|..+.
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~--~----L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFK--G----LPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhccc--c----CcccchhhhheeeCCCCCeeh
Confidence 23345667889999999999999999999999999976521 11111110 0 000012346788999999888
Q ss_pred EecC-CeEEEEECCCCCCceEEEeeccc-ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee-
Q 043890 355 SRDY-MTLKLWDINMDSGPVATFQVHEY-LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA- 431 (509)
Q Consensus 355 s~~~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~- 431 (509)
+--. ..-.+||+-+...++..+. |.. .-. ....+ .+++|-.|-. +++|+.+-.|++|.+.....-.
T Consensus 261 siRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~------N~~T~---KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCFVLKSD-HNPNGYC------NIKTI---KSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred hhhccCCCEEeeeecccceeEecc-CCCCcce------eeeee---eeeeeeccee-eeccCcccceEEEecCCCccccC
Confidence 7543 4445678876333333332 222 111 01112 2788865544 8999999999999986321111
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.+--+|...... ..++-.+ ...-|.| |..-++++.|+|-..+|++++- +.++||+
T Consensus 330 ~~~IG~~~~~~~---------------~~~~i~~---~~~VLrG----HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 330 FTQIGHDEEEMP---------------SEIFIEK---ELTVLRG----HRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccccCcchhhCc---------------hhheecc---eeEEEec----ccccccceeecCCcceEeccchhhheeccc
Confidence 011112100000 0000000 0011223 3566788999998888776665 8888886
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=156.23 Aligned_cols=195 Identities=17% Similarity=0.274 Sum_probs=148.7
Q ss_pred CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCc
Q 043890 53 DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGA 132 (509)
Q Consensus 53 ~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 132 (509)
+.+|++..+|.|++||..+++. +..+++|. ..++.++|.-.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----------------------l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----------------------LEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----------------------hheecCCC------------CcccceEEecCCCCC
Confidence 6799999999999999999877 77888888 779999995211456
Q ss_pred eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccc
Q 043890 133 LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTS 212 (509)
Q Consensus 133 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ 212 (509)
.+.+|+.||+|++||++.........
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~------------------------------------------------------ 111 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARIS------------------------------------------------------ 111 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhhee------------------------------------------------------
Confidence 78999999999999998765433211
Q ss_pred cccceeeeeeeeeecccc-cCeEEEEECCCCCEEEEE-c----CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEE
Q 043890 213 NETSLVARCRRVYAHAHD-YHINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 286 (509)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 286 (509)
...+. .+..+++..-.++.+++| . +-.|.+||+|..++.+. .-...|...|+++.
T Consensus 112 -------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~------~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 112 -------------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR------QLNESHNDDVTQLR 172 (376)
T ss_pred -------------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhh------hhhhhccCcceeEE
Confidence 12232 456677777678888887 3 78899999998776443 24577999999999
Q ss_pred EeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC--CEEEEecCCeEEEE
Q 043890 287 FHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG--RHILSRDYMTLKLW 364 (509)
Q Consensus 287 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iw 364 (509)
|+|..+++|++|+.||.|.+||++....-.....++ .|...|..+.|..++ +.+...-.....+|
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIY 239 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-------------cccceeeeeeeecCCcceEEEEEccCceeEE
Confidence 999999999999999999999998764221112222 234679999999888 54444446899999
Q ss_pred ECCC
Q 043890 365 DINM 368 (509)
Q Consensus 365 d~~~ 368 (509)
+++.
T Consensus 240 ele~ 243 (376)
T KOG1188|consen 240 ELED 243 (376)
T ss_pred EccC
Confidence 9986
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.6e-21 Score=187.51 Aligned_cols=255 Identities=15% Similarity=0.239 Sum_probs=190.5
Q ss_pred cccceEEEEECCCCCe----EEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 39 EVDIISAIEFDKTGDH----LATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~----la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
-..+.+.++|.+.|.. ||.|..||.|.+||...... +.+...+..+..|+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~--------- 116 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT--------- 116 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC---------
Confidence 4567899999998755 99999999999999876311 11122345666777
Q ss_pred hhhccceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|.++.| ++... +||+|+.||.|.|||+..-+.-.. +
T Consensus 117 ---G~V~gLDf--N~~q~nlLASGa~~geI~iWDlnn~~tP~~-----------------------------~------- 155 (1049)
T KOG0307|consen 117 ---GPVLGLDF--NPFQGNLLASGADDGEILIWDLNKPETPFT-----------------------------P------- 155 (1049)
T ss_pred ---Cceeeeec--cccCCceeeccCCCCcEEEeccCCcCCCCC-----------------------------C-------
Confidence 88999999 66554 999999999999999986431110 0
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+ ...-...|.+++|+..- ..|+++ .+|.+.|||++..+.++.+
T Consensus 156 ------~-------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l---- 200 (1049)
T KOG0307|consen 156 ------G-------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL---- 200 (1049)
T ss_pred ------C-------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc----
Confidence 0 02234569999998764 557777 8999999999988766543
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCC---eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
........+..++|+|++...+++++.|. .|.+||+|.... +++++ .+|..+|.++.|++
T Consensus 201 --s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~------------~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 201 --SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKIL------------EGHQRGILSLSWCP 263 (1049)
T ss_pred --ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhh------------cccccceeeeccCC
Confidence 22222345789999999988888888764 699999997542 23444 44568999999999
Q ss_pred CC-CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCCCcEEEEeCC
Q 043890 349 DG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYSNLFRVFGCA 425 (509)
Q Consensus 349 ~~-~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 425 (509)
.+ ++|++++ |++|.+|+.++ ++.+..+.....+.. .+.|.|... .++.++-||.|.||.+.
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~f---------------dv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWCF---------------DVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCC-ceEeeecCCCCccee---------------eeeecCCCcchhhhheeccceeeeeee
Confidence 66 7777764 79999999998 788888877666543 899999665 78888999999999998
Q ss_pred CCc
Q 043890 426 PGS 428 (509)
Q Consensus 426 ~~~ 428 (509)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 554
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=163.07 Aligned_cols=264 Identities=16% Similarity=0.221 Sum_probs=180.3
Q ss_pred EEEEECC-------CCCeEEeecCCCeEEEEEccCCCCCCCcccccc---ccccccccCCcceEEeeeccCCcchhhccc
Q 043890 44 SAIEFDK-------TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLE---RMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 44 ~~v~~s~-------~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.|++|.. .|+|+|.|+.|..|.|||++-.... ...-.+. ....... ......-.+|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v-~P~~~LGs~~sk~~~k~----~k~~~~~~gHT-------- 243 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAV-LPCVTLGSKASKKKKKK----GKRSNSASGHT-------- 243 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccc-ccceeechhhhhhhhhh----cccccccccch--------
Confidence 5666653 2689999999999999999754331 0000110 0000000 00011234565
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|..|.|+ -...+.||+||.|.+|++||+.++++...
T Consensus 244 ----davl~Ls~n-~~~~nVLaSgsaD~TV~lWD~~~g~p~~s------------------------------------- 281 (463)
T KOG0270|consen 244 ----DAVLALSWN-RNFRNVLASGSADKTVKLWDVDTGKPKSS------------------------------------- 281 (463)
T ss_pred ----HHHHHHHhc-cccceeEEecCCCceEEEEEcCCCCccee-------------------------------------
Confidence 789999994 22345899999999999999999986544
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+..|...|.++.|+|. ..+|++| .|++|.+.|.|.....-.
T Consensus 282 --------------------------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~----- 324 (463)
T KOG0270|consen 282 --------------------------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK----- 324 (463)
T ss_pred --------------------------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-----
Confidence 2567889999999985 6778899 899999999996433211
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.-...+.|-.++|.|.....++++..||+|+-+|+|+.. +++.++. +|.++|.++++++.-.
T Consensus 325 ---~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~------------AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 325 ---EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLK------------AHDDEISGLSVNIQTP 386 (463)
T ss_pred ---eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEE------------eccCCcceEEecCCCC
Confidence 112367889999999988899999999999999999875 2344444 4558999999998665
Q ss_pred E-EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCCc
Q 043890 352 H-ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 352 ~-l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 428 (509)
. +++++ ++.|++|++.. ..+. ....|.-.... ..++++.|+- -.|+.|+..+.++|||+.+..
T Consensus 387 ~~l~t~s~d~~Vklw~~~~-~~~~-~v~~~~~~~~r------------l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDV-DSPK-SVKEHSFKLGR------------LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cceeeccccceEEEEeecC-CCCc-ccccccccccc------------eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 4 55554 69999999985 2221 11122211111 1156666654 357788888899999999877
Q ss_pred eee
Q 043890 429 TEA 431 (509)
Q Consensus 429 ~~~ 431 (509)
.+.
T Consensus 453 ~V~ 455 (463)
T KOG0270|consen 453 PVR 455 (463)
T ss_pred hHH
Confidence 665
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=151.35 Aligned_cols=198 Identities=17% Similarity=0.283 Sum_probs=150.7
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
..++.| ++-|.+||+|+.||.|.|||+.+.....+
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 678888 99999999999999999999998764333
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+.+|..+|.+++|+++|+.|+++ .|..|.+||+..+....++ ..
T Consensus 61 --------------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri---------rf 105 (405)
T KOG1273|consen 61 --------------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI---------RF 105 (405)
T ss_pred --------------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE---------Ec
Confidence 47899999999999999999999 8999999999988755433 24
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY 358 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 358 (509)
.++|..+.|+|...+.+++.-.+..-.+.++.... -..+.... .+... ....+..|.+.|+++++|..
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-----h~~Lp~d~-d~dln------~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-----HSVLPKDD-DGDLN------SSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCc-----eeeccCCC-ccccc------cccccccccCCCCEEEEecC
Confidence 78999999999875666655555555555655433 12222111 11111 12233468999999999976
Q ss_pred -CeEEEEECCCCCCceEEEeecc-cccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 359 -MTLKLWDINMDSGPVATFQVHE-YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 359 -~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
|.+.++|..+ .+++..++... .. |..+.++..|+.|+.-+.|..|+.|++.
T Consensus 174 KGkllv~~a~t-~e~vas~rits~~~---------------IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 174 KGKLLVYDAET-LECVASFRITSVQA---------------IKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cceEEEEecch-heeeeeeeechhee---------------eeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999999997 67777766543 22 2278899999999999999999999986
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=6.3e-21 Score=159.72 Aligned_cols=267 Identities=15% Similarity=0.219 Sum_probs=185.2
Q ss_pred ecccceEEEEECCC----CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 38 QEVDIISAIEFDKT----GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 38 ~h~~~I~~v~~s~~----~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.|......++|+-+ ..+||.|+.-|.|+|.|+.+++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 37788889999865 46899999999999999999888 67888888
Q ss_pred hhhhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 114 LEIEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|+.|.| .|+ .++++++++|..|++|++++..++.++..
T Consensus 136 ----~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--------------------------------- 176 (385)
T ss_pred ----ccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------------------------
Confidence 78999999 554 46899999999999999999887655321
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeE----
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI---- 267 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~---- 267 (509)
..+|.+.|.++.|+.+|.+++++ -|..+++|++...+..-.+
T Consensus 177 ---------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~ 223 (385)
T KOG1034|consen 177 ---------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSI 223 (385)
T ss_pred ---------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhc
Confidence 37899999999999999999999 8999999999843211000
Q ss_pred --eecc------------C--CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc-CCCC
Q 043890 268 --VDVK------------P--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE-APGS 330 (509)
Q Consensus 268 --~~~~------------~--~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~ 330 (509)
..-+ | .+..-|...|-|+.|-- +++++-+-++.|..|....-... +.....++ ....
T Consensus 224 ~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~---~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 224 TYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEES---IHNVKPPESATTI 297 (385)
T ss_pred ccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhh---hhccCCCccceee
Confidence 0000 0 02234666677777653 57888888999999987321110 11110000 0000
Q ss_pred ccccccccccEEEEE--EecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC
Q 043890 331 RSFFTEIIASISDIK--FAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG 407 (509)
Q Consensus 331 ~~~~~~~~~~i~~~~--~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 407 (509)
...+......|.-+. |.|-+++||.|.. |.|++||++....+..+--.|. .+...|...+|+.|+
T Consensus 298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s------------~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS------------KSGSTVRQTSFSRDG 365 (385)
T ss_pred eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec------------cccceeeeeeecccC
Confidence 111222234555555 5566889999876 9999999997333222111121 111224489999999
Q ss_pred CEEEEeeCCCcEEEEeCC
Q 043890 408 LRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 408 ~~l~~~~~dg~i~iw~~~ 425 (509)
..|+...+|++|.-||.-
T Consensus 366 s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEEeCCCcEEEEEee
Confidence 999999999999999853
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.7e-20 Score=164.20 Aligned_cols=214 Identities=14% Similarity=0.191 Sum_probs=171.1
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
.-.||+......|+++|+..+.|+|||+..... ...+++|. ..|+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-----------------------hr~lkdh~------------stvt 125 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI-----------------------HRFLKDHQ------------STVT 125 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHH-----------------------hhhccCCc------------ceeE
Confidence 345555555569999999999999999996555 46678888 8899
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
++.+ +-...|||+++..|.|.|..+.++.....+.
T Consensus 126 ~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~------------------------------------------- 160 (673)
T KOG4378|consen 126 YVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT------------------------------------------- 160 (673)
T ss_pred EEEe--cCCcceeEEeccCCcEEEEecccCcccccee-------------------------------------------
Confidence 9999 8888899999999999999998775322211
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEE-E-cCCeEEEEEccCCCceeeEeeccCCccCCCc
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 279 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
.+....|+-+.+++..+.+++ + ++|.|.+||+........ ....|.
T Consensus 161 -------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------~~~~Hs 208 (673)
T KOG4378|consen 161 -------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------ASEAHS 208 (673)
T ss_pred -------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------hhhhcc
Confidence 122334667889998877665 4 899999999987665442 467799
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY- 358 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 358 (509)
.+...|+|+|..+.+|++.+.|..|.+||++..... ..+.-. .+...++|.++|.+|++|..
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y~-------------~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTYS-------------HPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeeccccccc----ceeeec-------------CCcceeeecCCceEEEeecCC
Confidence 999999999998899999999999999999976642 222211 47899999999999999965
Q ss_pred CeEEEEECCCCCCceEEEeecccccc
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRP 384 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~ 384 (509)
|.|..||++....++..+..|...++
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred ceEEEEecccCCCCceEeeeccccee
Confidence 99999999987889999999987765
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=7.5e-21 Score=177.79 Aligned_cols=264 Identities=14% Similarity=0.208 Sum_probs=196.0
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|..+|+|+.|+..|.++++|+.|..++||..++..+ +....||+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------------lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------------LASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------------hccCCCCc----------
Confidence 456999999999999999999999999999999998888 78889999
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.|+.++. +.+..++++++.|..|++|.+.++..+.+
T Consensus 233 --~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv--------------------------------------- 269 (1113)
T KOG0644|consen 233 --GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV--------------------------------------- 269 (1113)
T ss_pred --cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH---------------------------------------
Confidence 77999999 77888999999999999999999887665
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+.+|++.|++|+|+|-. .+++||++++||.+- . ..++...|..+
T Consensus 270 ------------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~-~--~~~y~prp~~~ 313 (1113)
T KOG0644|consen 270 ------------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL-E--PRIYVPRPLKF 313 (1113)
T ss_pred ------------------------------HhccccceeeeccCccc---cCCCCCceEeccccc-c--ccccCCCCCCc
Confidence 48899999999999955 333899999999981 1 11111122233
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC-CEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-RHIL 354 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~ 354 (509)
.+ ..-+.++.|...+ .-+++++.|+.-..|.+..... .. ..+.-+.++.+- .+.+
T Consensus 314 ~~-~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~-~~---------------------~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 314 TE-KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW-RS---------------------NLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred cc-ccceeeeeccccc-cccccccCCcccccchhhHhhh-hc---------------------cceEEEeccccccccce
Confidence 32 3566778888887 8899999999888887654321 00 111112222222 3444
Q ss_pred Ee-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCCceeee
Q 043890 355 SR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
++ .+-.+++|++.+ +.+.+.+.+|...+. .+.++|-+ +...+++.||...|||+-.|.+++.
T Consensus 370 ~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~y---------------vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYT-GQLLHNLMGHSDEVY---------------VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred eeeeeeEeeeeeccc-chhhhhhccccccee---------------eeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 44 457899999997 777888888877644 78889854 4566889999999999999988884
Q ss_pred eeccCCCceeEEEEcCCCCC
Q 043890 433 TLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~ 452 (509)
.+.+ .+.+..-+||++|..
T Consensus 434 y~~g-h~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 434 YFIG-HGKLVDGKFSQDGTS 452 (1113)
T ss_pred eecc-cceeeccccCCCCce
Confidence 4444 334444456655554
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=4.4e-19 Score=152.31 Aligned_cols=292 Identities=18% Similarity=0.295 Sum_probs=194.5
Q ss_pred EeeccccccccCcceecccceEEEEECC-----CCCeEEee---cCCCeEEEEEccC-CCCCCCccccccccccccccCC
Q 043890 23 KFSQVFGERTAGEEVQEVDIISAIEFDK-----TGDHLATG---DRGGRVVLFERTD-TKDHGGSRRDLERMDYSTSRHP 93 (509)
Q Consensus 23 ~~~~~~~~~~~~~~~~h~~~I~~v~~s~-----~~~~la~g---~~dg~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (509)
+|.+.||++...+.--..=.|+-++|+. +.++||.- +..|...+.-+.. ++. - +
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~----d-------------~ 72 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRM----D-------------A 72 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeeccccccccc----C-------------C
Confidence 5667888777665544455778888876 45677652 2233444444332 111 0 0
Q ss_pred cceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcc
Q 043890 94 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVA 173 (509)
Q Consensus 94 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (509)
-.-.+.||+ +.|..+.|+|. +.+.||+||.|.+|.||++-.+-......
T Consensus 73 ---~~P~v~GHt------------~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------- 121 (472)
T KOG0303|consen 73 ---SYPLVCGHT------------APVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLT--------------- 121 (472)
T ss_pred ---CCCCccCcc------------ccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcc---------------
Confidence 013457787 88999999644 45589999999999999997654222110
Q ss_pred cCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCC
Q 043890 174 SSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDL 251 (509)
Q Consensus 174 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg 251 (509)
++. ..+.+|...|--+.|+|.. +.|+++ .|.
T Consensus 122 ----------------------------------------------epv-v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 122 ----------------------------------------------EPV-VELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ----------------------------------------------cce-EEEeecceeEEEEeecccchhhHhhccCCc
Confidence 111 1258999999999999974 567777 899
Q ss_pred eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCc
Q 043890 252 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSR 331 (509)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
+|.+||+.+++.+++ +. |...|.++.|+.+| .+|++.+.|..|+|||.+++++.. .-..|+.
T Consensus 155 ~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~----e~~~heG---- 216 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVS----EGVAHEG---- 216 (472)
T ss_pred eEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEee----ecccccC----
Confidence 999999999987654 33 99999999999999 999999999999999999998532 2122221
Q ss_pred cccccccccEEEEEEecCCCEEEEe----cCCeEEEEECCCCCCceE--EEeecccccccccccccCCCccceeeEEEcC
Q 043890 332 SFFTEIIASISDIKFAKDGRHILSR----DYMTLKLWDINMDSGPVA--TFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s~----~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
..-..+.|-.+|.++.+| ++.++-+||..+-.+++. .+...++. .---|.+
T Consensus 217 -------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv----------------l~PFyD~ 273 (472)
T KOG0303|consen 217 -------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV----------------LLPFYDP 273 (472)
T ss_pred -------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCce----------------EEeeecC
Confidence 234556788889966666 358999999886445533 22222221 1223567
Q ss_pred CCCEEEEee-CCCcEEEEeCCCCceeeeeec--cCCCceeEEEEcCCC
Q 043890 406 DGLRVATGS-YSNLFRVFGCAPGSTEATTLE--ASKNPMRRQVQTPSR 450 (509)
Q Consensus 406 ~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~s~~~ 450 (509)
|.+.++.++ .|+.|+.|.+....+....|. ....|-+.+.+-|.+
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 777776555 699999999986553221222 233555666665543
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=4.9e-19 Score=161.93 Aligned_cols=270 Identities=15% Similarity=0.243 Sum_probs=194.7
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
.|..++|-|||.-|+.+..+ .+.+||...+.. +..+++|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~l-----------------------lqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTL-----------------------LQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccc-----------------------cccccccc------------ceEE
Confidence 89999999999887776644 799999999887 78999999 8899
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
+++| +.||+++++|+.|+.|.+|+-.-...
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~------------------------------------------------ 87 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGI------------------------------------------------ 87 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEecccccce------------------------------------------------
Confidence 9999 99999999999999999998642210
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccc
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 281 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 281 (509)
....|.+.|.|+.|+|-...|+++.=...-+|........ -......
T Consensus 88 -----------------------LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----------K~kss~R 134 (1081)
T KOG1538|consen 88 -----------------------LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----------KHKSSSR 134 (1081)
T ss_pred -----------------------eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----------hhhhhee
Confidence 1257899999999999999999984334668887653311 1223567
Q ss_pred eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC-----CEEEEe
Q 043890 282 ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-----RHILSR 356 (509)
Q Consensus 282 i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-----~~l~s~ 356 (509)
+.+++|..|| ++|+.|-.+|+|.+-+-..... ++ ++.+ .+..++|.+++|+|.. ..++..
T Consensus 135 ~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek----~~-I~Rp---------gg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 135 IICCSWTNDG-QYLALGMFNGTISIRNKNGEEK----VK-IERP---------GGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred EEEeeecCCC-cEEEEeccCceEEeecCCCCcc----eE-EeCC---------CCCCCCceEEEecCCCCCCccceEEEE
Confidence 8899999999 9999999999999986443321 12 2211 1123689999999953 245555
Q ss_pred cC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 DY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
+- .++.+|.+.. +.+..-+.-.-. -.++.+-++|.+++.|+.|+.+.+|.-+ |-.+. ++.
T Consensus 200 DW~qTLSFy~LsG--~~Igk~r~L~Fd---------------P~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLG-Tvg 260 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSG--KQIGKDRALNFD---------------PCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLG-TVG 260 (1081)
T ss_pred eccceeEEEEecc--eeecccccCCCC---------------chhheeccCCcEEEEccCCCceEEEeec-CeEEe-ecc
Confidence 43 6677776652 222211110000 0178888999999999999999999865 55554 332
Q ss_pred cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 436 ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
. +...|+.++.+|++.++++|+. +++--|
T Consensus 261 ~-------------------------------------------~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 261 E-------------------------------------------QDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred c-------------------------------------------cceeEEEEEEccCCceEEEEEccCeeehh
Confidence 2 2356788888888888888877 555444
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-17 Score=133.88 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=181.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
..|.+-+++|.+++|++|+.+|.|.+..+.+...... ..|.-..+..+++|+ ++|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeeccccC------------CCe
Confidence 4566778999999999999999999999876543110 112222244557887 889
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
+.++| . ..+|++|+ ||.|+-|..+......-
T Consensus 66 y~~~f--~--d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------------------- 96 (325)
T KOG0649|consen 66 YYLAF--H--DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------------------- 96 (325)
T ss_pred eeeee--e--hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence 99999 3 44677766 59999999876532110
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 279 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
.-++|.+...... - .-.-..|+++...|..+-++.+ .|+.++.||+++++-.. .+.+|+
T Consensus 97 ---~K~lwe~~~P~~~--------~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r--------~~rGHt 156 (325)
T KOG0649|consen 97 ---TKRLWEVKIPMQV--------D-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR--------EYRGHT 156 (325)
T ss_pred ---chhhhhhcCcccc--------C-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE--------EEcCCc
Confidence 1223332211100 0 0112358889999887777766 99999999999877432 689999
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc-ccccEEEEEEecCCCEEEEecC
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE-IIASISDIKFAKDGRHILSRDY 358 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~ 358 (509)
+.|.+++-.... ..+++|++||++|+||+++++. +.+++..+.+.. +.- -...|.+++. +..+|++|+.
T Consensus 157 DYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~---lRp~~g~wigala~--~edWlvCGgG 226 (325)
T KOG0649|consen 157 DYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNL---LRPDWGKWIGALAV--NEDWLVCGGG 226 (325)
T ss_pred ceeeeeeecccC-cceeecCCCccEEEEeccccce----eEEeccccChhh---cCcccCceeEEEec--cCceEEecCC
Confidence 999999986554 6899999999999999999874 444443322211 111 1245666665 5679999988
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
..+.+|.++. ..+...+...... ..+.|. .+.++++++.+.|.-|.+. |...
T Consensus 227 p~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~ 278 (325)
T KOG0649|consen 227 PKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQ 278 (325)
T ss_pred CceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec-cEEE
Confidence 8999999997 6777766543321 156773 4567788888899999987 5443
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.1e-19 Score=161.38 Aligned_cols=283 Identities=15% Similarity=0.174 Sum_probs=196.8
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+..|.+.|..++|+|....|++++.||.|++|+++.... +.......+.+|.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~---------------s~~~~~epi~tfraH~--------- 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK---------------SAEKDVEPILTFRAHE--------- 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC---------------ccccceeeeEEEeccc---------
Confidence 4456999999999999999999999999999999954222 1112334478999999
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
++|.|+.. +++++.+++|+.||+|+.|++.... -..-
T Consensus 345 ---gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~d------------------------------------- 381 (577)
T KOG0642|consen 345 ---GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDD------------------------------------- 381 (577)
T ss_pred ---CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Cccc-------------------------------------
Confidence 89999999 9999999999999999999886221 0000
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
.+|. ......+.||.+.++.+++++....|+++ .||++++|+......+. + .
T Consensus 382 ------------s~dp---------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~--f----~ 434 (577)
T KOG0642|consen 382 ------------SYDP---------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCT--F----G 434 (577)
T ss_pred ------------ccCc---------chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccc--c----C
Confidence 0000 00001148999999999999999899999 99999999987654310 0 0
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
....| +...++.+-.......++...-+.-.++|+..... ...+.....++... ...+..+.++|.+.+.
T Consensus 435 ~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~~-----~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 435 EPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPRR-----YPQINKVVSHPTADIT 504 (577)
T ss_pred Ccccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCcccc-----cCccceEEecCCCCee
Confidence 11112 23345555444322333333333334444444332 34444433222211 1357888899999988
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
+++- ++.|+++|..+ +.++.....|...++ ++++.|+|-+|++++.|+.+++|.+....++.
T Consensus 505 ~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svt---------------slai~~ng~~l~s~s~d~sv~l~kld~k~~~~- 567 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKT-GKILHSMVAHKDSVT---------------SLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL- 567 (577)
T ss_pred EecccCCceecccccc-cccchheeeccceec---------------ceeecCCCceEEeecCCceeehhhccchheee-
Confidence 8875 59999999997 788888888876655 89999999999999999999999998777665
Q ss_pred eeccCC
Q 043890 433 TLEASK 438 (509)
Q Consensus 433 ~~~~~~ 438 (509)
....|.
T Consensus 568 es~~~r 573 (577)
T KOG0642|consen 568 ESTAHR 573 (577)
T ss_pred cccccc
Confidence 444443
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.7e-19 Score=160.65 Aligned_cols=249 Identities=14% Similarity=0.231 Sum_probs=179.0
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSS 176 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (509)
....+.||+ +.|.+|.. .|.|..|++|+.||+|+||.+.++.++.....
T Consensus 392 ~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----------------- 440 (733)
T KOG0650|consen 392 CALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----------------- 440 (733)
T ss_pred eeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEee-----------------
Confidence 456788998 88999999 89999999999999999999999986654221
Q ss_pred CCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC--EEEEE-c----
Q 043890 177 NNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE--TFISA-D---- 249 (509)
Q Consensus 177 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~---- 249 (509)
.+.|.|++|+|.+. .||++ .
T Consensus 441 -----------------------------------------------------d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 441 -----------------------------------------------------DSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred -----------------------------------------------------cceeEEEEecCCCCceeEEEEecCceE
Confidence 12355666655443 23333 2
Q ss_pred ----------------------------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC
Q 043890 250 ----------------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 301 (509)
Q Consensus 250 ----------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d 301 (509)
++.+..|.-...++... .....-.|...|..+.|+..| .+|++...+
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~----~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~ 542 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEK----GVCIVIKHPKSIRQVTWHRKG-DYLATVMPD 542 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhcc----ceEEEEecCCccceeeeecCC-ceEEEeccC
Confidence 22333333221110000 000112467889999999999 899987664
Q ss_pred ---CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEee
Q 043890 302 ---GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 302 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~ 378 (509)
..|.|+++..... ...|... .+.|.++.|+|...+|+.++...|+|||+.. ...++.+..
T Consensus 543 ~~~~~VliHQLSK~~s----Q~PF~ks------------kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~t 605 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKS----QSPFRKS------------KGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLT 605 (733)
T ss_pred CCcceEEEEecccccc----cCchhhc------------CCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhc
Confidence 5688999887653 1222222 2679999999999999999999999999986 566665554
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccce
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSI 458 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 458 (509)
...++. .++.+|.|..|+.++.|+.+..||+.-+....+++.-|.
T Consensus 606 g~kwiS---------------~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~-------------------- 650 (733)
T KOG0650|consen 606 GSKWIS---------------SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-------------------- 650 (733)
T ss_pred CCeeee---------------eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--------------------
Confidence 444433 889999999999999999999999986554443555554
Q ss_pred eeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 459 TRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
+.++.++||+.-.++|+|++ +.++||++
T Consensus 651 -----------------------~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 651 -----------------------KAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred -----------------------hhhhhhhhccccceeeeecCCCcEEEEee
Confidence 67889999999999999999 88998874
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.5e-18 Score=166.61 Aligned_cols=314 Identities=13% Similarity=0.211 Sum_probs=205.6
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
.-..+.|+|=...+++++..-.|+|||.+.++. ...|..+... ...|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-----------------------l~~F~n~~~~---------~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-----------------------LNGFDNGAFP---------DTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce-----------------------eccccCCCCC---------CCccc
Confidence 456788999888899988777999999998877 4444444322 16699
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhh-hhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKV-KKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
.|.+....|..++++|+.||.|+||+--.... ...+-..... =.+.............|..... .+...|
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~----Ls~~~~~~r~~~~v~dWqQ~~G-----~Ll~tG 1184 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS----LSDQLPGARGTGLVVDWQQQSG-----HLLVTG 1184 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc----ccccCccCCCCCeeeehhhhCC-----eEEecC
Confidence 99986445667899999999999998432210 0000000000 0011111111112223332221 234566
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEEC-CCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+...|++||...+.... ....+....++++.-+ ..|+.++.| .||.|++||.+....-..+ .....|
T Consensus 1185 d~r~IRIWDa~~E~~~~------diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-----~~~R~h 1253 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVA------DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-----CVYREH 1253 (1387)
T ss_pred CeeEEEEEecccceeEe------ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----eeeccc
Confidence 68899999987653321 1123445567766653 347999999 9999999999875432111 245667
Q ss_pred ccc--eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 279 TEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 279 ~~~--i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+.. |..+.+.+.|-..|++|+.||.|++||+|.... .. .-+...+. +..+..+++..+++...+|+|
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~-~~~iv~~~---------~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET-FLTIVAHW---------EYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc-cceeeecc---------ccCccceeeeeccCCCeeeec
Confidence 776 999999998855699999999999999998521 11 11111110 112358999999999999999
Q ss_pred cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 357 DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 357 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+.+.|+||++. ++.+..++.+.... ..++..+.+++|+|-.-+||+|+.|.+|.||......
T Consensus 1323 s~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1323 SAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 88999999998 35555555443222 2344445599999999999999999999999987543
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=152.57 Aligned_cols=249 Identities=15% Similarity=0.215 Sum_probs=182.7
Q ss_pred cccccCeEEEEECCCCC--EEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 227 HAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~--~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
.-+...|++++|+|..+ ++++| ..|.|-+||+++.+.... ....+..|..+|.++.|+|.+...+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d----~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD----GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC----ceEEeccCCccccceEecCCChhheeeeccCce
Confidence 45678899999999754 67788 799999999974332221 112567899999999999998889999999999
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccc
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
|++-|++.... +.+...... ...+.++.|+.+...++.+++ |...+||+++++.....+..|...
T Consensus 259 iR~~D~~~~i~--e~v~s~~~d------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNIS--EEVLSLDTD------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhh--HHHhhcCcc------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 99999998752 112222111 146788899998888888876 999999999977778888878765
Q ss_pred cccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCC--ce-eeeeeccCCCceeEEEEcCCCCCC---cc
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPG--ST-EATTLEASKNPMRRQVQTPSRPSR---SL 455 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~--~~-~~~~~~~~~~~v~~~~~s~~~~~~---~~ 455 (509)
+. .++++|.. .+|||++.|++.+|||++.- +. .....-.|..+|.+..|||++... ..
T Consensus 325 I~---------------sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 325 IT---------------SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cc---------------eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 44 89999965 57899999999999999742 21 112556799999999999999873 34
Q ss_pred cceeeEeecCCCCCcccCCCccccc----cc--ceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 456 SSITRVVRRGSDVPGVDTNGNSFDF----TT--KLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.+..|+++.. ++..++..-..+.| .+ .....+|+|+..++++|.. ..|-||+.
T Consensus 390 D~~IRv~dss-~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 390 DNEIRVFDSS-CISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred CCceEEeecc-cccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 4667777653 22222222222222 12 2457899999999999988 77777763
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=3.1e-18 Score=141.19 Aligned_cols=244 Identities=16% Similarity=0.306 Sum_probs=171.6
Q ss_pred cceeEEeeccccccccC--c----c-eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccc
Q 043890 18 QPLEWKFSQVFGERTAG--E----E-VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTS 90 (509)
Q Consensus 18 ~~~~~~~~~~~~~~~~~--~----~-~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 90 (509)
....|++.++++..... + + ..+-+.|.|+.|.|++..||+-. |..|.+|+++........+.
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~---------- 162 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL---------- 162 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec----------
Confidence 34678888888653221 1 1 13556999999999999999877 77899999987765111110
Q ss_pred cCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCC
Q 043890 91 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNG 170 (509)
Q Consensus 91 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 170 (509)
.. .+.++....++-+|+|..+++.+++.+ |+++..||+++.+.....
T Consensus 163 ------------ss-------~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI------------- 209 (370)
T KOG1007|consen 163 ------------SS-------ESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSI------------- 209 (370)
T ss_pred ------------cc-------ccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcch-------------
Confidence 00 011122567888996666888777665 789999999976533221
Q ss_pred CcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCE-EEEE-
Q 043890 171 NVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGET-FISA- 248 (509)
Q Consensus 171 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~- 248 (509)
-.+|...|+.+.|+|+.++ |++|
T Consensus 210 -------------------------------------------------------~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 210 -------------------------------------------------------EDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred -------------------------------------------------------hhhhcceeeeccCCCCceEEEEEcC
Confidence 1678888999999999776 6667
Q ss_pred cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCC-----ceeeec
Q 043890 249 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDS-----HAILFE 323 (509)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~ 323 (509)
+||.|++||.+..+..+ ..+.+|...|.++.|+|...+++++++.|..|.+|....-.-... .....+
T Consensus 235 DdgyvriWD~R~tk~pv-------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e 307 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKFPV-------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE 307 (370)
T ss_pred CCccEEEEeccCCCccc-------cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence 99999999999876543 478899999999999998878999999999999998765321000 000000
Q ss_pred cc--------cCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECC
Q 043890 324 EQ--------EAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDIN 367 (509)
Q Consensus 324 ~~--------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~ 367 (509)
.+ -+.+....+.+|...|.+++|+.-..++++. + ||++.|=.+.
T Consensus 308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 00 0122334678899999999999877777664 5 5999887665
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.5e-17 Score=154.93 Aligned_cols=316 Identities=17% Similarity=0.259 Sum_probs=213.5
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|.-.++|+++||+++++|+|..||.|.+|.-...+. +....+.++-|.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~----------- 251 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH----------- 251 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc-----------
Confidence 45888899999999999999999999999997544111 000136677887
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|+++.| +++|.+|++|+..|.+.+|.+.+++ .+.
T Consensus 252 -~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~-kqf---------------------------------------- 287 (792)
T KOG1963|consen 252 -DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGK-KQF---------------------------------------- 287 (792)
T ss_pred -cccceeEE--ecCCceEeecccceEEEEEeecCCC-ccc----------------------------------------
Confidence 67999999 9999999999999999999999887 222
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC--
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-- 273 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-- 273 (509)
+..-..+|..+.++||+.+.+.. .|+.|.+....+......+-.+++.
T Consensus 288 -----------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 288 -----------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred -----------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 24445679999999999999988 9999999987654433222222211
Q ss_pred -ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 274 -NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 274 -~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
.-....+-.+.++++|.- +.++..+..|.|.+||+.+..... .+.....+..... ..+.-.+++++.+..|.+
T Consensus 339 ~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~-~~~v~~~n~~~~~----~n~~v~itav~~~~~gs~ 412 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIY-KLQVCDENYSDGD----VNIQVGITAVARSRFGSW 412 (792)
T ss_pred cccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceee-eEEEEeecccCCc----ceeEEeeeeehhhccceE
Confidence 111234556788999964 788889999999999999876531 1222222211111 123457888888889999
Q ss_pred EEEec---------C--CeEEEEECCCCCCc---eEEEe-ecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCC
Q 043890 353 ILSRD---------Y--MTLKLWDINMDSGP---VATFQ-VHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYS 416 (509)
Q Consensus 353 l~s~~---------~--~~i~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 416 (509)
+++.. + -.+++|-.....+. ...+. .|..... ..+..++... ..++++.|
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v--------------at~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV--------------ATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE--------------EEEEecCcccceeEEeccC
Confidence 99852 1 25788877642221 11111 2322211 0223333333 78999999
Q ss_pred CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEE
Q 043890 417 NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
|.++||-+...+.+. + + +..+....- ...+..+++.++|+.||..|
T Consensus 479 g~~KiW~~~~~~n~~---k-~-~s~W~c~~i-----------------------------~sy~k~~i~a~~fs~dGsll 524 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIY---K-K-SSNWTCKAI-----------------------------GSYHKTPITALCFSQDGSLL 524 (792)
T ss_pred CeEEEEEEecccccC---c-C-ccceEEeee-----------------------------eccccCcccchhhcCCCcEE
Confidence 999999996544332 0 1 111111000 00136789999999999999
Q ss_pred EEEecCceEEEeC
Q 043890 497 ACAAANSLYMYYA 509 (509)
Q Consensus 497 a~~~~~~i~v~~~ 509 (509)
|++.++.|-+|+.
T Consensus 525 a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 525 AVSFDDTITIWDY 537 (792)
T ss_pred EEecCCEEEEecC
Confidence 9999999999974
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=6.9e-18 Score=139.18 Aligned_cols=271 Identities=16% Similarity=0.218 Sum_probs=176.1
Q ss_pred eecccceEEEEECCC-CCeEEeecCC-------CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcch
Q 043890 37 VQEVDIISAIEFDKT-GDHLATGDRG-------GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEF 108 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~-~~~la~g~~d-------g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 108 (509)
..|.+.|..++-+|. .++|+++-.+ -.+.||.+...... ... ...
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-S~~--------------------------~tl 112 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-SNS--------------------------STL 112 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-ccc--------------------------chh
Confidence 347789999999995 5677765432 34789998765541 000 001
Q ss_pred hhccch--hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCcccc
Q 043890 109 DYLKSL--EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLA 186 (509)
Q Consensus 109 ~~~~~~--~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (509)
+.+..+ +.-+.|.++.| .|++..+++-. |..|.+|++..+..+ .......
T Consensus 113 E~v~~Ldteavg~i~cvew--~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss------------------------ 164 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEW--EPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSS------------------------ 164 (370)
T ss_pred hHhhcCCHHHhCceeeEEE--cCCCCeeEEec-cCceEEEEcccCcch-heeeccc------------------------
Confidence 111111 12267999999 77888888766 789999999877542 1110000
Q ss_pred CCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEEcCCeEEEEEccCCCce
Q 043890 187 NGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISADDLRINLWNLEISNQS 264 (509)
Q Consensus 187 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~dg~i~iwd~~~~~~~ 264 (509)
...++....++-+|+| +++.+++..|+++..||+++.++.
T Consensus 165 --------------------------------------~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 165 --------------------------------------ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred --------------------------------------ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 0023445567778988 688888889999999999987765
Q ss_pred eeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 265 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
.. ...+|...|..+.|+|+-..+|++++.||.|++||.|..+. ++.. +.+|.-.+.++
T Consensus 207 ~s-------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~e------------l~~HsHWvW~V 264 (370)
T KOG1007|consen 207 NS-------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQE------------LPGHSHWVWAV 264 (370)
T ss_pred cc-------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccc------------cCCCceEEEEE
Confidence 54 24678889999999999877899999999999999998763 2333 44566899999
Q ss_pred EEecCC-CEEEEe-cCCeEEEEECCCCCCceEEE--------eeccc--ccccccc----cc--cCCCccceeeEEEcCC
Q 043890 345 KFAKDG-RHILSR-DYMTLKLWDINMDSGPVATF--------QVHEY--LRPKLCD----LY--ENDSIFDKFECCLSGD 406 (509)
Q Consensus 345 ~~s~~~-~~l~s~-~~~~i~iwd~~~~~~~~~~~--------~~~~~--~~~~~~~----~~--~~~~~~~v~~~~~s~~ 406 (509)
.|+|.. ++++++ +|..|.+|....-....+.. ..+.. ....+.+ -| +.++ |++++||.-
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS---VY~~aWSsa 341 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS---VYALAWSSA 341 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc---eEEEeeccC
Confidence 999954 455665 57899999765311100000 00000 0000110 01 1223 449999874
Q ss_pred C-CEEEEeeCCCcEEEEeCC
Q 043890 407 G-LRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 407 ~-~~l~~~~~dg~i~iw~~~ 425 (509)
. -.+|+-+.||.+.|=++.
T Consensus 342 dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCeeEEEeccCceEEeecCC
Confidence 4 457788999999987665
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=2e-17 Score=142.83 Aligned_cols=295 Identities=15% Similarity=0.262 Sum_probs=184.8
Q ss_pred cceeEEeecccccc------ccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCcccccccccccccc
Q 043890 18 QPLEWKFSQVFGER------TAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSR 91 (509)
Q Consensus 18 ~~~~~~~~~~~~~~------~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 91 (509)
.-..|+..+..... ....+..|...|+++.|+|+|++||+|+.+|.|.+|....-... ......-..
T Consensus 37 ~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-------~~d~e~~~~ 109 (434)
T KOG1009|consen 37 DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-------DADTEADLN 109 (434)
T ss_pred ceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-------cccchhhhC
Confidence 34558777654221 12345679999999999999999999999999999988742210 000000111
Q ss_pred CCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCC
Q 043890 92 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGN 171 (509)
Q Consensus 92 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (509)
.+.+.....+.+|. ..|..++| +++++++++++.|..+++||+..|.....
T Consensus 110 ke~w~v~k~lr~h~------------~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~l~~~--------------- 160 (434)
T KOG1009|consen 110 KEKWVVKKVLRGHR------------DDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQLLAI--------------- 160 (434)
T ss_pred ccceEEEEEecccc------------cchhhhhc--cCCCceeeeeeccceEEEEEeccceeEee---------------
Confidence 23456677888888 77999999 99999999999999999999998875443
Q ss_pred cccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC
Q 043890 172 VASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD 250 (509)
Q Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 250 (509)
+..|...+..++|.|-++++++- .|
T Consensus 161 ------------------------------------------------------~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 161 ------------------------------------------------------LDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred ------------------------------------------------------ccccccccceeecchhhhhhhhhccC
Confidence 35677778888888888888876 66
Q ss_pred CeEEEEEccCCCceeeEe-eccCCc-c-------------CCCccceEEEEEeCCCCcEEEEEEc----CCeEEEEECCC
Q 043890 251 LRINLWNLEISNQSFNIV-DVKPAN-M-------------EDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDLRQ 311 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~-~~~~~~-~-------------~~~~~~i~~l~~~~~~~~~l~~~~~----dg~i~vwd~~~ 311 (509)
...+.+.+...+....+- ...+.. . .....-...++|+|+| .+|++... .+.+. ++
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~---~n- 261 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVF---RN- 261 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCcee---ec-
Confidence 656666555433221110 000000 0 0112234568899998 77776542 22221 01
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEec------------------CCCEEEEecCCeEEEEECCCCCCce
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK------------------DGRHILSRDYMTLKLWDINMDSGPV 373 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~s~~~~~i~iwd~~~~~~~~ 373 (509)
..+.+.......+...+.....+...+.|+| -+-.++.++.+.|+|||.++ -.++
T Consensus 262 ------~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-~~P~ 334 (434)
T KOG1009|consen 262 ------TSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-LEPL 334 (434)
T ss_pred ------eeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-ccce
Confidence 0122222211111111222223455555554 12234456678999999997 4565
Q ss_pred EEEee-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 374 ATFQV-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 374 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
..... |-..++ +++|++||.+|+..+.||...+-.++..++
T Consensus 335 ~~v~nihy~~iT---------------Diaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 335 AVVDNIHYSAIT---------------DIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEeeeeeeeec---------------ceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 55443 444433 999999999999999999888877765443
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=3.6e-17 Score=154.52 Aligned_cols=287 Identities=15% Similarity=0.164 Sum_probs=187.6
Q ss_pred cceeEEeeccccccccCcceecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcce
Q 043890 18 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFR 96 (509)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (509)
....|.+..+.. + ..-..-...|+|++|+|. ..+||.|..+|.|.+||+..+.... -..
T Consensus 223 ~~~vW~~~~p~~-P--e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------------~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNPNT-P--ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------------PSG 282 (555)
T ss_pred eEEEEecCCCCC-c--eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------------Ccc
Confidence 567788887732 1 111234689999999995 6889999999999999998776511 001
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhh-hhhccCCCCCcccCCCCcccC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVK-KIADMNVDPSKAVGNGNVASS 175 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 175 (509)
.......|. ..++.+.|..++.+.-|++++.||.|..|+++.-... .........
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------ 338 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------ 338 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------
Confidence 112223444 7899999975555567999999999999977643321 110000000
Q ss_pred CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeE
Q 043890 176 SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRI 253 (509)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i 253 (509)
.. .-.......+++++|.+. .+.|++| ++|.|
T Consensus 339 --------------------------------------------~~--~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 339 --------------------------------------------HK--GQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred --------------------------------------------cc--ccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 00 000122345788999774 4668888 99999
Q ss_pred EEEEccCCCceeeEeeccC-CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcc
Q 043890 254 NLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRS 332 (509)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
.--+-........ ...++ .....|.++|+++.++|-+.++|.+++ |-+++||...... .++..++.+
T Consensus 373 ~~~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~------- 440 (555)
T KOG1587|consen 373 YKGCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSLDSS------- 440 (555)
T ss_pred EEEeccCCccccc-ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC---Ccchhhhhc-------
Confidence 8744333222210 00011 255678999999999999866677766 9999999877322 123333333
Q ss_pred ccccccccEEEEEEecCCCEEEE-ec-CCeEEEEECCCC-CCceEEEeecccccccccccccCCCccceeeEEEcCCCCE
Q 043890 333 FFTEIIASISDIKFAKDGRHILS-RD-YMTLKLWDINMD-SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR 409 (509)
Q Consensus 333 ~~~~~~~~i~~~~~s~~~~~l~s-~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 409 (509)
...+.+++|||-...+++ ++ +|.+.|||+... ..++.+...+....+ .+.|+++|+.
T Consensus 441 -----~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~---------------~~~~s~~g~~ 500 (555)
T KOG1587|consen 441 -----PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT---------------RVRWSPNGKL 500 (555)
T ss_pred -----cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccc---------------eeecCCCCcE
Confidence 256999999997765554 54 499999999752 234444433322211 7789999999
Q ss_pred EEEeeCCCcEEEEeCCC
Q 043890 410 VATGSYSNLFRVFGCAP 426 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~ 426 (509)
|++|...|.+++|++..
T Consensus 501 lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 501 LAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEecCCCcEEEEEcCc
Confidence 99999999999999964
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=152.99 Aligned_cols=306 Identities=16% Similarity=0.215 Sum_probs=215.4
Q ss_pred CcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee-ccCCcchhhcc
Q 043890 34 GEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QSHEPEFDYLK 112 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~ 112 (509)
..+-.|.+.|..|.|+..|..|++|+.|..|.+||...... ...+ .||.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-----------------------~l~f~SGH~------- 185 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-----------------------KLSFESGHC------- 185 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCc-----------------------ccccccccc-------
Confidence 34556999999999999999999999999999999998876 2233 4666
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|..-.|.|..+.+-+++++.||.+++=.+.........
T Consensus 186 -----~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t----------------------------------- 225 (559)
T KOG1334|consen 186 -----NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT----------------------------------- 225 (559)
T ss_pred -----cchhhhhccCCCCCcCceeccccCceeeeeeccccceecc-----------------------------------
Confidence 5677777877778889999999999998766433211100
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCE-EEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
..+..|.++|..++.-|+..+ |.++ .|+.+.-+|++.......+.
T Consensus 226 -------------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-- 272 (559)
T KOG1334|consen 226 -------------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-- 272 (559)
T ss_pred -------------------------------eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--
Confidence 013678899999999887544 6666 99999999999765433221
Q ss_pred cCCccCCCcc---ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCccc--CCceeeeccccCCCCccccccccccEEEEE
Q 043890 271 KPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALC--DSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 271 ~~~~~~~~~~---~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
....+.. ...+++.+|...+.+++++.|..+++||.+.-... ...+..|..+.. .......|++++
T Consensus 273 ---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl------~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 273 ---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL------VEDDPVNITGLV 343 (559)
T ss_pred ---eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc------cccCcccceeEE
Confidence 1112222 56889999998789999999999999998864421 011222222221 112235799999
Q ss_pred EecCCC-EEEEecCCeEEEEECCCCCC-----------ce-EEEeecccccccccccccCCCccceeeEE-EcCCCCEEE
Q 043890 346 FAKDGR-HILSRDYMTLKLWDINMDSG-----------PV-ATFQVHEYLRPKLCDLYENDSIFDKFECC-LSGDGLRVA 411 (509)
Q Consensus 346 ~s~~~~-~l~s~~~~~i~iwd~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~ 411 (509)
|+.++. +|++-.|-.|++|.-..... .+ +.+++|....+ |-.+- |-|...|++
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVNFfGPrsEyVv 410 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVNFFGPRSEYVV 410 (559)
T ss_pred ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceeeeccCccceEE
Confidence 997655 55555778899995443111 11 22666655433 11444 578899999
Q ss_pred EeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC
Q 043890 412 TGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP 491 (509)
Q Consensus 412 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 491 (509)
+|+.-|.|.||+-.+++.+. .|++.. .-|+||-=||
T Consensus 411 SGSDCGhIFiW~K~t~eii~-~MegDr-------------------------------------------~VVNCLEpHP 446 (559)
T KOG1334|consen 411 SGSDCGHIFIWDKKTGEIIR-FMEGDR-------------------------------------------HVVNCLEPHP 446 (559)
T ss_pred ecCccceEEEEecchhHHHH-Hhhccc-------------------------------------------ceEeccCCCC
Confidence 99999999999999999887 666654 2467777778
Q ss_pred CCcEEEEEec-CceEEEe
Q 043890 492 TENSIACAAA-NSLYMYY 508 (509)
Q Consensus 492 ~~~~la~~~~-~~i~v~~ 508 (509)
--.+||+++- ..|+||.
T Consensus 447 ~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 447 HLPVLASSGIDHDVKIWT 464 (559)
T ss_pred CCchhhccCCccceeeec
Confidence 8888887766 6788875
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.2e-17 Score=147.46 Aligned_cols=182 Identities=16% Similarity=0.230 Sum_probs=138.3
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
|.+.|.+-+| +|||.-|++++.||.|++|.-... ....
T Consensus 103 H~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrsGM-LRSt--------------------------------------- 140 (737)
T KOG1524|consen 103 HAAAISSGRW--SPDGAGLLTAGEDGVIKIWSRSGM-LRST--------------------------------------- 140 (737)
T ss_pred hhhhhhhccc--CCCCceeeeecCCceEEEEeccch-HHHH---------------------------------------
Confidence 4488999999 999999999999999999996543 2211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+.....+|.|++|.|+.+.++.+..+.+.|=-+...... ...
T Consensus 141 ------------------------------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~--------i~W 182 (737)
T KOG1524|consen 141 ------------------------------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKI--------IRW 182 (737)
T ss_pred ------------------------------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccce--------eEE
Confidence 122345699999999999888886667777666544433 367
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
..|++-|.++.|++.. +++++|++|-..++||-....+ ..-.. |.-+|++++|.|+ +.++.
T Consensus 183 kAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~L-----f~S~~------------~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 183 RAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANL-----FTSAA------------EEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eccCcEEEEeecCccc-cceeecCCceeEEeecccCccc-----ccCCh------------hccceeeeeeccc-cceee
Confidence 8899999999999998 9999999999999999776543 22122 3368999999999 77777
Q ss_pred ecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 356 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 356 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
++.++.++=..+ .+ .|+.++||+||..++.|+..|.+.+=.
T Consensus 244 ~S~nt~R~~~p~------------~G---------------SifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 244 WSYNTARFSSPR------------VG---------------SIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeeeecCCC------------cc---------------ceEEEEEcCCCceeeccccCceEEEee
Confidence 777766621111 11 134899999999999999999876543
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=2.1e-16 Score=146.34 Aligned_cols=169 Identities=16% Similarity=0.206 Sum_probs=105.0
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEE-EEEEcCCeEEEEEC
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l-~~~~~dg~i~vwd~ 309 (509)
...++++|++++|+++ .++.|.+|++++........ ..+ .+......++++|++ +++ ++...++.|.+||+
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----~~~-~~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI----QII-EGLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----eec-cCCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEE
Confidence 5679999999988877 58999999997533221110 011 122345678899998 555 45556799999999
Q ss_pred CCCcccCCc-eeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCc---eEEEeeccccc
Q 043890 310 RQSALCDSH-AILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGP---VATFQVHEYLR 383 (509)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~---~~~~~~~~~~~ 383 (509)
++...+... ........ ......+.|+|+|++++++. ++.|.+||+...... +..+.......
T Consensus 156 ~~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 864321100 00000000 13467799999999998864 499999999742222 22222111100
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCCCC
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCAPG 427 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 427 (509)
. ... . ...+.++|++++|+++.. ++.|.+|+++..
T Consensus 225 ~-------~~~-~-~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 225 S-------DTR-W-AADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred C-------CCc-c-ceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 0 000 0 115889999999998854 789999999653
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.3e-18 Score=151.82 Aligned_cols=244 Identities=20% Similarity=0.268 Sum_probs=164.6
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
..++.||++.|+|++|+.+|.+||+|+.|-.+.|||....+. ....-.||.
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt------- 93 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT------- 93 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc-------
Confidence 456778999999999999999999999999999999986665 123446888
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++|.|-.+.+.+++|..|..|+++|+...+.....
T Consensus 94 -----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d----------------------------------- 133 (758)
T KOG1310|consen 94 -----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD----------------------------------- 133 (758)
T ss_pred -----cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc-----------------------------------
Confidence 7899999987778889999999999999999864321110
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEee-
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD- 269 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~- 269 (509)
.+-....++ ...|...|..|+..|++ +.+.++ +||+|+-+|++....+..-..
T Consensus 134 ------~~~~~~~~~------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 134 ------HGMEETTRC------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred ------cCccchhhh------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 000001122 26688889999999988 677788 999999999997432210000
Q ss_pred -ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccC--------------CceeeeccccCCCCcccc
Q 043890 270 -VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCD--------------SHAILFEEQEAPGSRSFF 334 (509)
Q Consensus 270 -~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 334 (509)
.....+...--...++..+|..+.+|++|+.|-..++||.+...... ..++.|............
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 00001111123457899999998999999999999999965321100 001111111110111111
Q ss_pred ccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCC
Q 043890 335 TEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMD 369 (509)
Q Consensus 335 ~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~ 369 (509)
......++-+.|+|+|.-|+.. +...|+++|+...
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 1112236778899999877765 4478999999863
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-16 Score=156.42 Aligned_cols=302 Identities=16% Similarity=0.261 Sum_probs=189.7
Q ss_pred cccccCCCcceeEEeeccccccccCcceecccceEEEEECCCC-CeEEeecCCCeEEEEEccCCCCCCCccccccccccc
Q 043890 10 SAAQASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTG-DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYS 88 (509)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~-~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 88 (509)
++++.+.+++..|+..-.+ ..++..|...|..++.++.. .++++|+.||+|++|++......+.
T Consensus 1022 p~~~~~~~p~~gW~p~G~l----VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~----------- 1086 (1431)
T KOG1240|consen 1022 PSAWSVGSPPPGWNPRGIL----VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG----------- 1086 (1431)
T ss_pred CchhhcCCCCCCCCccceE----eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-----------
Confidence 5566667777778776555 55667799999999988765 9999999999999999986554110
Q ss_pred cccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccC
Q 043890 89 TSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVG 168 (509)
Q Consensus 89 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 168 (509)
.+...+.-+. ....+..+.. -+.++.+|.++.||.|++.+++.....+....
T Consensus 1087 -------s~rS~ltys~----------~~sr~~~vt~--~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~--------- 1138 (1431)
T KOG1240|consen 1087 -------SARSELTYSP----------EGSRVEKVTM--CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT--------- 1138 (1431)
T ss_pred -------eeeeeEEEec----------cCCceEEEEe--ccCCCeEEEEcCCCeEEEEEccccccccceee---------
Confidence 0112222221 0156788887 56788999999999999999986422111000
Q ss_pred CCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-C-CEEE
Q 043890 169 NGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-G-ETFI 246 (509)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~-~~l~ 246 (509)
.+++.+. .....-|...++... + ..++
T Consensus 1139 -----------------------------------~~ri~n~----------------~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1139 -----------------------------------QVRIPNL----------------KKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred -----------------------------------eeecccc----------------cCCCceEEeecccccccceeEE
Confidence 0111111 111112333334322 2 2566
Q ss_pred EE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccc
Q 043890 247 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQ 325 (509)
Q Consensus 247 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 325 (509)
.+ ..+.|..||+++......+ ......+.|++++.+|.+ +++++|...|.+.+||+|-+.. +..+.-+
T Consensus 1168 y~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~----i~sw~~P 1236 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVP----ILSWEHP 1236 (1431)
T ss_pred EEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCce----eecccCc
Confidence 66 8899999999986654432 233345789999999998 8999999999999999997754 3333322
Q ss_pred cCCCCccccccccccEEEEEEecC---CCEEEEe-c-C-CeEEEEECCCCCCceEEEeeccccccccccccc------CC
Q 043890 326 EAPGSRSFFTEIIASISDIKFAKD---GRHILSR-D-Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE------ND 393 (509)
Q Consensus 326 ~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~-~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 393 (509)
. ..+|+.+..+|- ....+++ . . +.|.+|++.+ +.....+-..... ..+..... ..
T Consensus 1237 ~-----------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1237 A-----------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALPSNDARKPD 1303 (1431)
T ss_pred c-----------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcccccCCCCC
Confidence 1 146777777663 3455554 3 3 8999999997 4444444333111 11111000 11
Q ss_pred CccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 394 SIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 394 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
..- ...+++..-+.++.+|+.|..|+.||....+..
T Consensus 1304 ~~~-~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1304 SLA-GISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccc-ceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 111 113445555678999999999999998765433
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=1.2e-17 Score=152.00 Aligned_cols=262 Identities=18% Similarity=0.284 Sum_probs=177.5
Q ss_pred ECCCCCeEEe--ecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEE
Q 043890 48 FDKTGDHLAT--GDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 125 (509)
Q Consensus 48 ~s~~~~~la~--g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~ 125 (509)
|+.+..++|+ .+..|.|-||++...-. -|+..+-..+.+ ..|+.+.|
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGr-----------------LPDgv~p~l~Ng--------------t~vtDl~W 635 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGR-----------------LPDGVMPGLFNG--------------TLVTDLHW 635 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCC-----------------CCcccccccccC--------------ceeeeccc
Confidence 4445566664 45578999999986543 122222233333 34999999
Q ss_pred EEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCc
Q 043890 126 CQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPS 204 (509)
Q Consensus 126 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 204 (509)
.| |.+.|++++.||.|++|.+..+.......
T Consensus 636 --dPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~---------------------------------------------- 667 (1012)
T KOG1445|consen 636 --DPFDDERLAVATDDGQINLWRLTANGLPENEM---------------------------------------------- 667 (1012)
T ss_pred --CCCChHHeeecccCceEEEEEeccCCCCcccC----------------------------------------------
Confidence 55 66799999999999999998764322110
Q ss_pred cccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccce
Q 043890 205 LRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 282 (509)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 282 (509)
.+.+ .+..|...|+++.|+|- .+.|+++ .|-+|++||+++.+.. ..+.+|.+.|
T Consensus 668 ---------------tPe~-~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~--------~~l~gHtdqI 723 (1012)
T KOG1445|consen 668 ---------------TPEK-ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY--------SRLVGHTDQI 723 (1012)
T ss_pred ---------------Ccce-eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh--------heeccCcCce
Confidence 0001 14789999999999995 5678888 8999999999987643 2678999999
Q ss_pred EEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-----c
Q 043890 283 TSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-----D 357 (509)
Q Consensus 283 ~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-----~ 357 (509)
.+++|+|+| +.+++.+.||+|++|..+.+.. ...++....+ ..-..+.|.-||+++++. +
T Consensus 724 f~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~gpvg---------tRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 724 FGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEGKGPVG---------TRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred eEEEECCCC-cceeeeecCceEEEeCCCCCCC-----ccccCCCCcc---------CcceeEEEEecCcEEEEecccccc
Confidence 999999999 9999999999999999998763 2233222111 233567788899988874 2
Q ss_pred CCeEEEEECCCCC-CceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 358 YMTLKLWDINMDS-GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 358 ~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
..+|.+||.++-. .++.+......... + --.+.+|.. ++++|-.|..|++|.+-...+....+.
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~-L-------------vP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSP-L-------------VPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCcc-c-------------cccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence 3789999987522 34443322211110 0 123445554 566778899999999876555443555
Q ss_pred cCCCce
Q 043890 436 ASKNPM 441 (509)
Q Consensus 436 ~~~~~v 441 (509)
.|..++
T Consensus 855 ~f~sp~ 860 (1012)
T KOG1445|consen 855 PFMSPV 860 (1012)
T ss_pred cccCCC
Confidence 555444
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.4e-17 Score=141.75 Aligned_cols=209 Identities=14% Similarity=0.174 Sum_probs=156.7
Q ss_pred ecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
||+++|..++|+| +...||+|+.|.+|.||.+..+.. ..+-......+.||.
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l----------------~~~ltepvv~L~gH~----------- 131 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL----------------TRDLTEPVVELYGHQ----------- 131 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCccc----------------ccCcccceEEEeecc-----------
Confidence 6999999999999 468999999999999999987654 111223478889998
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.-++|.|.. .+.|++++.|.+|.+||+.+++..-.
T Consensus 132 -rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~---------------------------------------- 169 (472)
T KOG0303|consen 132 -RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT---------------------------------------- 169 (472)
T ss_pred -eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee----------------------------------------
Confidence 789999995433 34889999999999999998863211
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
..|.+.|.+++|+.+|.+|++. .|..|+|||.++++.... -
T Consensus 170 ------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e--------~ 211 (472)
T KOG0303|consen 170 ------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE--------G 211 (472)
T ss_pred ------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee--------c
Confidence 2388889999999999999999 999999999998875432 2
Q ss_pred CCCcc-ceEEEEEeCCCCcEEEEEE---cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 276 EDLTE-VITSAEFHPTHCNMLAYSS---SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 276 ~~~~~-~i~~l~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.+|.+ .-..+.|-.++ .++-+|. .+..+-+||..+-..- --...++.. ++|.---|.+|..
T Consensus 212 ~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtS-------------nGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEP-IALQELDTS-------------NGVLLPFYDPDTS 276 (472)
T ss_pred ccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCc-ceeEEeccC-------------CceEEeeecCCCC
Confidence 34432 34567788887 6554443 3678999998775421 001222222 4677777889888
Q ss_pred EEEEe--cCCeEEEEECCC
Q 043890 352 HILSR--DYMTLKLWDINM 368 (509)
Q Consensus 352 ~l~s~--~~~~i~iwd~~~ 368 (509)
++..+ +|+.|+-|.+..
T Consensus 277 ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEEEEecCCcceEEEEecC
Confidence 77765 479999999986
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=3.4e-17 Score=146.31 Aligned_cols=202 Identities=15% Similarity=0.223 Sum_probs=154.5
Q ss_pred CEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceee
Q 043890 243 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAIL 321 (509)
Q Consensus 243 ~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 321 (509)
..|+.+ .||.+.+.+-.. +.- .....|.+.+.+-.|+|+| .-|+++++||.|++|.- ++.+ ..+
T Consensus 76 d~~~i~s~DGkf~il~k~~-rVE--------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGML----RSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RVE--------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGML----RST 140 (737)
T ss_pred ceEEEEcCCceEEEecccc-hhh--------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchH----HHH
Confidence 345555 889988876442 211 2567899999999999999 89999999999999984 4432 112
Q ss_pred eccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeE
Q 043890 322 FEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFEC 401 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 401 (509)
+... ..+|.|++|.|+..-++.+..+.+.|=.+.. ...+-..+.|.+.+. ++
T Consensus 141 l~Q~------------~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGiiL---------------~~ 192 (737)
T KOG1524|consen 141 VVQN------------EESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLVL---------------SL 192 (737)
T ss_pred Hhhc------------CceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEEE---------------Ee
Confidence 2211 2589999999999888887668888888885 566778889998865 99
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc-ceeeEeecCCCCCcccCCCccccc
Q 043890 402 CLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS-SITRVVRRGSDVPGVDTNGNSFDF 480 (509)
Q Consensus 402 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
.|++.+.++++|++|-..+|||-. |+.+. .-..|..|+++++|.|+......+ ...| +.. .-
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf-~S~~~ey~ITSva~npd~~~~v~S~nt~R------------~~~---p~ 255 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQ-GANLF-TSAAEEYAITSVAFNPEKDYLLWSYNTAR------------FSS---PR 255 (737)
T ss_pred ecCccccceeecCCceeEEeeccc-Ccccc-cCChhccceeeeeeccccceeeeeeeeee------------ecC---CC
Confidence 999999999999999999999976 77787 888999999999999994432111 1111 000 01
Q ss_pred ccceEEEEEcCCCcEEEEEecCce
Q 043890 481 TTKLLHLAWHPTENSIACAAANSL 504 (509)
Q Consensus 481 ~~~i~~~~~~p~~~~la~~~~~~i 504 (509)
.+.|..++|||||..+++|+..+.
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred ccceEEEEEcCCCceeeccccCce
Confidence 367999999999999999998443
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=3e-15 Score=145.16 Aligned_cols=265 Identities=24% Similarity=0.403 Sum_probs=196.3
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCC-CCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTK-DHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
...|...|.++.|.+.+..++.++.|+.+.+|+..... . ...+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL-----------------------IKSLEGLHD-------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee-----------------------EEEEeccCC--------
Confidence 45699999999999999999999999999999998775 3 344444320
Q ss_pred hhhccceeeEEEEcCCCc-eEEEeeC-CCeEEEEeccc-hhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 115 EIEEKINKIRWCQTANGA-LFLLSTN-DKTIKFWKVQE-KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..+..+.+. .+++. .++..+. |+.+.+|++.. ....
T Consensus 110 ---~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 148 (466)
T COG2319 110 ---SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLI------------------------------------- 148 (466)
T ss_pred ---CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEE-------------------------------------
Confidence 246777775 66776 5555444 99999999986 2111
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c-CCeEEEEEccCCCceeeEee
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~ 269 (509)
.....|...|..++|+|++..++.+ . ++.+++|++.......
T Consensus 149 --------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 192 (466)
T COG2319 149 --------------------------------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---- 192 (466)
T ss_pred --------------------------------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE----
Confidence 0136788889999999999988888 5 9999999999744332
Q ss_pred ccCCccCCCccceEEEEEeCCCCc-EEEEEEcCCeEEEEECCCCcccCCcee-eeccccCCCCccccccccccEEEEEEe
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDLRQSALCDSHAI-LFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+..|...|.+++|+|++ . ++++++.|+.|++||...+.. .. .+..+ .... ...|+
T Consensus 193 ----~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~----~~~~~~~~------------~~~~-~~~~~ 250 (466)
T COG2319 193 ----TLAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKL----LRSTLSGH------------SDSV-VSSFS 250 (466)
T ss_pred ----eeccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcE----EeeecCCC------------Ccce-eEeEC
Confidence 445589999999999998 5 555558999999998885543 22 23322 2333 22899
Q ss_pred cCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 348 KDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 348 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
|++.++++++ ++.+++||+......+..+..|...+ .++.|+|++..+++++.|+.+.+|+..+
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 9998888765 59999999996443244443443332 2789999999999899999999999988
Q ss_pred Cceeeeeec--cCCCceeEEEE
Q 043890 427 GSTEATTLE--ASKNPMRRQVQ 446 (509)
Q Consensus 427 ~~~~~~~~~--~~~~~v~~~~~ 446 (509)
..... ... .|...+..+.+
T Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 316 GKLLS-SLTLKGHEGPVSSLSF 336 (466)
T ss_pred CceEE-EeeecccCCceEEEEE
Confidence 77666 554 78888888888
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=3.4e-17 Score=156.20 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=144.0
Q ss_pred ccceeeEEEEcCCCceEEEeeCC---CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTND---KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..+...+| +|||++|+.++.+ ..|.+||+.+++......
T Consensus 204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------ 245 (429)
T PRK01742 204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------ 245 (429)
T ss_pred CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence 56899999 9999999988654 469999998764221100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEE--EccCCCceeeEeec
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDV 270 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iw--d~~~~~~~~~~~~~ 270 (509)
..+| ...++|+|+|+.|+.+ .+|.+.|| |+.++. ..
T Consensus 246 -------------------------------~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~----- 285 (429)
T PRK01742 246 -------------------------------FRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS----- 285 (429)
T ss_pred -------------------------------CCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE-----
Confidence 1222 2357899999988875 57766665 554433 21
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEE-EEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
.+..+...+..+.|+|++ +.|+ ++..++...||+++..... ...+ .. .. ....|+||
T Consensus 286 ---~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~------------~~--~~~~~SpD 343 (429)
T PRK01742 286 ---QLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGG---ASLV-GG------------RG--YSAQISAD 343 (429)
T ss_pred ---eeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC---eEEe-cC------------CC--CCccCCCC
Confidence 344456677889999999 6555 4456788888887643211 1111 11 11 34689999
Q ss_pred CCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC--CC
Q 043890 350 GRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA--PG 427 (509)
Q Consensus 350 ~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~ 427 (509)
|++|+..+...+.+||+.+ +... .+.... ... .+.|+|||++|+.++.++.+.+|.+. +|
T Consensus 344 G~~ia~~~~~~i~~~Dl~~-g~~~-~lt~~~-~~~---------------~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 344 GKTLVMINGDNVVKQDLTS-GSTE-VLSSTF-LDE---------------SPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred CCEEEEEcCCCEEEEECCC-CCeE-EecCCC-CCC---------------CceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 9999887655577799986 3332 222111 111 67899999999999999988888753 57
Q ss_pred ceeeeeeccCCCceeEEEEcCC
Q 043890 428 STEATTLEASKNPMRRQVQTPS 449 (509)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~ 449 (509)
.... .+.+|.+.+...+|+|-
T Consensus 406 ~~~~-~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKA-RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceE-EccCCCCCCCCcccCCC
Confidence 7776 88888888888889874
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.4e-15 Score=130.14 Aligned_cols=159 Identities=13% Similarity=0.206 Sum_probs=118.9
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE--cCCeEEEE
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLI 307 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vw 307 (509)
..|.++.++. +.|+++ .+ .|+|||+++.+.+-.+ .....+...+.++.+++.+ .+++.-+ ..|.|.+|
T Consensus 88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI-----~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTI-----ETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLF 158 (391)
T ss_pred CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhh-----hccCCCccceEeeccCCCC-ceEEecCCCCCceEEEE
Confidence 3477777754 457777 44 4999999987654333 1333456667777777776 6777543 36899999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-C-eEEEEECCCCCCceEEEeeccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEYLRPK 385 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~ 385 (509)
|..+-+. +..+. .|.+.+.+++|+++|.+||++++ | .||||.+.+ ++.+..++-....+.
T Consensus 159 d~~nl~~----v~~I~------------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~- 220 (391)
T KOG2110|consen 159 DTINLQP----VNTIN------------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS- 220 (391)
T ss_pred Eccccee----eeEEE------------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE-
Confidence 9887653 34444 45599999999999999999987 5 589999996 777777765544332
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
|++++|+|++++|++.+..++|+||.++...
T Consensus 221 ------------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 ------------IYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ------------EEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 4499999999999999999999999998544
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.3e-16 Score=135.66 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=136.2
Q ss_pred EEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 234 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
..++|+.+|..|+++ .||++|+|+..+..... ....|...|.++.|+||+ ++|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999999 99999999977655432 566789999999999999 999999999 8999999998
Q ss_pred cccCCceeeeccccCCCCccccccccccEEEEEEecCC---CEEEEe--cC-CeEEEEECCCCCCceEEEeecccccccc
Q 043890 313 ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG---RHILSR--DY-MTLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~s~--~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
..... ...+... .....+.|+.|+ .+.+.+ .. +.|+.||+....+- ..++.....
T Consensus 218 ~~~a~-~t~~~k~-------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AALAR-KTPFSKD-------------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chhhh-cCCcccc-------------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 42110 1111111 356778888876 333332 34 78888887653221 111111000
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
...+. |.+++.++||+++|.|+.||.|-|++..+-+.++..-++|..-|+.+.|+|+.+.
T Consensus 279 ---~~~~s---iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 279 ---KRFKS---ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred ---hccCc---ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 00011 2389999999999999999999999999999998788899999999999998776
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2e-15 Score=139.88 Aligned_cols=263 Identities=13% Similarity=0.136 Sum_probs=160.1
Q ss_pred cccceEEEEECCCCCeEEeec-CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGDHLATGD-RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+.+....++++|++++|++++ .++.|.+|+++.... +....... ..
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-----------------------l~~~~~~~----------~~ 79 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-----------------------LTFAAESP----------LP 79 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-----------------------eEEeeeec----------CC
Confidence 445678899999999987764 578899999973211 01010000 00
Q ss_pred ccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchh-hhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 118 EKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKK-VKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+....+.| +|++++|++++. ++.|.+|++++.. .....
T Consensus 80 ~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~-------------------------------------- 119 (330)
T PRK11028 80 GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPI-------------------------------------- 119 (330)
T ss_pred CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCce--------------------------------------
Confidence 33567888 999999888865 8899999996421 10000
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
.. ..+......++++|++++++++ .++.|.+||+++...+..... ...
T Consensus 120 ---------------------------~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~-~~~ 169 (330)
T PRK11028 120 ---------------------------QI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP-AEV 169 (330)
T ss_pred ---------------------------ee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC-Cce
Confidence 00 0111235567899999988665 689999999986432210000 000
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEc-CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
... .......++|+|++ ++++++.. ++.|.+||++......+.+..+.... .. .. +......+.++|++++
T Consensus 170 ~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~~---~~-~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 170 TTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--AD---FS-DTRWAADIHITPDGRH 241 (330)
T ss_pred ecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--Cc---CC-CCccceeEEECCCCCE
Confidence 111 12346789999998 77766665 89999999984311111122221110 00 00 0123346889999999
Q ss_pred EEEec--CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCC
Q 043890 353 ILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCA 425 (509)
Q Consensus 353 l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 425 (509)
++++. ++.|.+|++......+ .+..+..... . ...+.++|||++|+++.. +++|.+|+++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~---------~---p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVL-SFEGHQPTET---------Q---PRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeE-EEeEEEeccc---------c---CCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99874 4899999997533222 2222211100 0 017899999999998775 8999999875
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=1.3e-16 Score=131.83 Aligned_cols=249 Identities=15% Similarity=0.194 Sum_probs=169.1
Q ss_pred eecccceEEEEECCCC-----CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 37 VQEVDIISAIEFDKTG-----DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~-----~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
..|.-+++.+.|.|+. .+||+.+ | .+|||.+...+..... ...+..+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~-------------------~~~L~~~k------ 145 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVEL-------------------QSVLNNNK------ 145 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceeh-------------------hhhhccCc------
Confidence 3588899999999985 5677755 3 7999999854331000 01111111
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..++..++++..|+ .-+-++|.+.+-|-+..|||++++..-.
T Consensus 146 -ns~~~aPlTSFDWn-e~dp~~igtSSiDTTCTiWdie~~~~~~------------------------------------ 187 (364)
T KOG0290|consen 146 -NSEFCAPLTSFDWN-EVDPNLIGTSSIDTTCTIWDIETGVSGT------------------------------------ 187 (364)
T ss_pred -ccccCCcccccccc-cCCcceeEeecccCeEEEEEEeeccccc------------------------------------
Confidence 11223679999995 3466799999999999999999872110
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
.++-+.+|..+|..++|...+ +.||+. .||.|++||++..+...-+++
T Consensus 188 ------------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 188 ------------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ------------------------------eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 111247899999999999865 456776 899999999998765443321
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcC-CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
-.....+...++|++..++++|+-..| ..|.+.|+|.... ++ ..+.+|.+.|+.++|.|
T Consensus 238 -----~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---pv------------a~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 238 -----DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PV------------ARLRNHQASVNGIAWAP 297 (364)
T ss_pred -----CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---ce------------ehhhcCcccccceEecC
Confidence 112256788999999988999987665 5699999997542 12 23455679999999999
Q ss_pred C-CCEEEEecC-CeEEEEECCCCCC-----ceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCC
Q 043890 349 D-GRHILSRDY-MTLKLWDINMDSG-----PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYS 416 (509)
Q Consensus 349 ~-~~~l~s~~~-~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 416 (509)
. ...|++++| ..+-|||+....+ ++..+. .++. |..+.|++ .+.+++.+...
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E---------------VNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE---------------VNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce---------------eeeeeecccCCCEEEEEecC
Confidence 5 457777654 9999999986322 111121 1122 33899985 56777766543
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.9e-17 Score=133.82 Aligned_cols=290 Identities=13% Similarity=0.158 Sum_probs=174.1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|+++.| ..++ +|.+|..-|.|++|++.+.+......... ....+.+.-.|. +...
T Consensus 15 ~~v~s~~f--qa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g--------------~~~it~lq~~p~------d~l~ 71 (323)
T KOG0322|consen 15 SSVTSVLF--QANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFG--------------RLFITNLQSIPN------DSLD 71 (323)
T ss_pred chheehhh--ccch-hhhcccccceEEEEEeecCccchhhhhhc--------------cceeeceeecCC------cchh
Confidence 78999999 6665 69999999999999999887655443211 111111222221 2234
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCC-eEEEEEccCCCc--------eeeE
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQ--------SFNI 267 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg-~i~iwd~~~~~~--------~~~~ 267 (509)
+.+.+..+.+|++.... |...|.-.++++.|.+.. +... ... ....|+-+.... ...+
T Consensus 72 tqgRd~~L~lw~ia~s~----------~i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSA----------FISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred hcCCCceEEEEEccCcc----------eEEEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCcccee
Confidence 45666677777764421 224455555555555432 2222 221 233333222111 0000
Q ss_pred eeccCCccCCCccceEEEEEeCC-CC-cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPT-HC-NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~-~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
. +.+.......+.+.+..+... +. -+++.|.++|.+.+||+.++.. +++.+...+.......|..++.++.
T Consensus 140 ~-i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~------~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 140 Q-IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK------IIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred E-ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce------eeccccccccccchhhccCcceeee
Confidence 0 011122233456666664432 22 3566777899999999999752 2222222222223455778999999
Q ss_pred EecCCCEEEEec-CCeEEEEECCCCCCceE---EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEE
Q 043890 346 FAKDGRHILSRD-YMTLKLWDINMDSGPVA---TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 421 (509)
Q Consensus 346 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 421 (509)
|.+.-..=++|+ +..+..|+++-....+. ........+ ..+..-||++.+||++.|+.|+|
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv---------------~gvrIRpD~KIlATAGWD~RiRV 277 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV---------------SGVRIRPDGKILATAGWDHRIRV 277 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCc---------------cceEEccCCcEEeecccCCcEEE
Confidence 986433333433 47788888874322221 111111111 17889999999999999999999
Q ss_pred EeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 422 FGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 422 w~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
|..++.+++. +|+.|. ..|++++|+|+..++|.++.
T Consensus 278 yswrtl~pLA-VLkyHs-------------------------------------------agvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 278 YSWRTLNPLA-VLKYHS-------------------------------------------AGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred EEeccCCchh-hhhhhh-------------------------------------------cceeEEEeCCCCchhhhccC
Confidence 9999999998 888776 66888999999899998887
Q ss_pred -CceEEEe
Q 043890 502 -NSLYMYY 508 (509)
Q Consensus 502 -~~i~v~~ 508 (509)
..|-+|.
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 7888885
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.8e-16 Score=133.06 Aligned_cols=247 Identities=12% Similarity=0.115 Sum_probs=171.9
Q ss_pred cccceEEEEEC-------CCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 39 EVDIISAIEFD-------KTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 39 h~~~I~~v~~s-------~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
..+.|...+|- |+..++|+.+.+.-|.+||..+++. ..++.+-..-.+
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l-----------------------raSy~~ydh~de-- 157 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL-----------------------RASYRAYDHQDE-- 157 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc-----------------------ccchhhhhhHHh--
Confidence 45678888876 5678999999999999999999987 344433221000
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEec-cchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKV-QEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
-....+++| +|||.+|+.|- ...|+++|+ +.|+.-........
T Consensus 158 -----~taAhsL~F--s~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~---------------------------- 201 (406)
T KOG2919|consen 158 -----YTAAHSLQF--SPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK---------------------------- 201 (406)
T ss_pred -----hhhheeEEe--cCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc----------------------------
Confidence 034567888 99999987664 569999999 44431111000000
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEe
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~ 268 (509)
+ ..+..+.+.+++|+|.. ..++++ ....+-||.-.....+.
T Consensus 202 ---------~-------------------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~--- 244 (406)
T KOG2919|consen 202 ---------G-------------------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ--- 244 (406)
T ss_pred ---------c-------------------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee---
Confidence 0 03445678899999965 488888 77788888777655543
Q ss_pred eccCCccCCCccceEEEEEeCCCCcEEEEEEc-CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 269 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+.+|.+.|+.+.|.++| +.|.+|.. |..|..||+|..+. ++..+..+.... ..=.-+...
T Consensus 245 -----llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~---pv~~L~rhv~~T---------NQRI~FDld 306 (406)
T KOG2919|consen 245 -----LLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRD---PVYALERHVGDT---------NQRILFDLD 306 (406)
T ss_pred -----eecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccc---hhhhhhhhccCc---------cceEEEecC
Confidence 567899999999999999 78888775 78999999998653 244444332100 111224556
Q ss_pred cCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 348 KDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 348 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
|++++|++|+ +|.|++||++..+.++..+..+...+. .++++|--.++|+++..
T Consensus 307 ~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN---------------gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 307 PKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN---------------GVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCceeeccCCCccEEEEecCCCCCccccccccccccc---------------ceecCcccceeeeccCc
Confidence 8999999995 699999999986666666666665543 88999997778777654
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.4e-17 Score=147.30 Aligned_cols=232 Identities=17% Similarity=0.181 Sum_probs=151.3
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|+.+.| .+-...|++++.||.+++|+++... .....
T Consensus 295 d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~--~s~~~-------------------------------------- 332 (577)
T KOG0642|consen 295 DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAK--KSAEK-------------------------------------- 332 (577)
T ss_pred hhhhhhhc--CCCCCeEEEeccccchhhhhhcccC--Ccccc--------------------------------------
Confidence 78999999 7777799999999999999994311 00000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec--cCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--KPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~ 274 (509)
..+++.+| .+|.++|.|+++.+++..+.+| -||+|+.|++..........+. -...
T Consensus 333 --------------------~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 333 --------------------DVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred --------------------ceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 01222333 8999999999999999999999 8999999977633222211100 0125
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+.+|.+.+..+++++.. ..|++++.||+++.|+...... .+|...... +.-.++.+-.....+.
T Consensus 392 l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~----------g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEH----------GYPLSVDRTSSRPAHS 455 (577)
T ss_pred eeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcccc----------CCcceEeeccchhHhh
Confidence 78899999999999996 8899999999999999887653 223222110 2334455443221222
Q ss_pred Eec--CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 355 SRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
.++ .+.-.++++.. ...+..+...... .. .....+..+.++|.+.+.+++.+|+.|+++|..++..+.
T Consensus 456 ~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~--~~------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~- 525 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEV-VSDLLIFESSASP--GP------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH- 525 (577)
T ss_pred hhhcccccccchhhhh-hhheeeccccCCC--cc------cccCccceEEecCCCCeeEecccCCceecccccccccch-
Confidence 222 13333444443 2222222221111 00 001112267889999999999999999999999999887
Q ss_pred eeccCC
Q 043890 433 TLEASK 438 (509)
Q Consensus 433 ~~~~~~ 438 (509)
...+|.
T Consensus 526 s~~a~~ 531 (577)
T KOG0642|consen 526 SMVAHK 531 (577)
T ss_pred heeecc
Confidence 666665
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=1.1e-15 Score=144.51 Aligned_cols=262 Identities=13% Similarity=0.204 Sum_probs=174.4
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++.|+| -+..+++.|+.+|.|.+||+..+.........
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls------------------------------------- 284 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS------------------------------------- 284 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-------------------------------------
Confidence 5799999952 24557888899999999999876532110000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.....|..++..+.|..+ +.-|+++ .||.|..|+++.-.............
T Consensus 285 --------------------------~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~ 338 (555)
T KOG1587|consen 285 --------------------------ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK 338 (555)
T ss_pred --------------------------cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc
Confidence 002568889999999554 3447777 99999999988654433222111111
Q ss_pred ----cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 275 ----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 275 ----~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
-......+++++|.+..++.|++|+.+|.|.--+-...+... ...++. ...+..|.++|.++.++|=+
T Consensus 339 ~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~------~~~~~~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 339 HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKG------HSTFITHIGPVYAVSRNPFY 410 (555)
T ss_pred ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccc------cccccccCcceEeeecCCCc
Confidence 112245789999999988999999999998874433322110 011122 22345567899999999965
Q ss_pred C-EEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCCCcEEEEeCCCCc
Q 043890 351 R-HILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 351 ~-~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 428 (509)
. ++++++|..++||.......++..+..+...+ ++++|||... .++++..||.|.|||+....
T Consensus 411 ~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 411 PKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred cceeeeeccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 5 45556689999999874356766666555443 3999999764 67777889999999987432
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
. +|+.++... ....+.+.|++.++.|++|.. |++++|
T Consensus 476 ~---------~Pv~s~~~~---------------------------------~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 476 E---------EPVLSQKVC---------------------------------SPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred c---------CCccccccc---------------------------------ccccceeecCCCCcEEEEecCCCcEEEE
Confidence 2 122221110 244678899999999999999 778877
Q ss_pred e
Q 043890 508 Y 508 (509)
Q Consensus 508 ~ 508 (509)
.
T Consensus 514 ~ 514 (555)
T KOG1587|consen 514 K 514 (555)
T ss_pred E
Confidence 5
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=6.7e-16 Score=129.53 Aligned_cols=227 Identities=13% Similarity=0.192 Sum_probs=166.1
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
..+|+|.+|++|+..+|++..+..|.||.....+. +....++..|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhC------------cc
Confidence 47899999999999999999999999999887764 23356666776 88
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEec-cchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKV-QEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
|++|.| +|..+.|++++.|..-.||.. ..++-+..+.
T Consensus 58 vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEee--cCCCCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999 999999999999999999998 4444332211
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+..++..++++.|+|.++.||+| ....|.||-++..+.-..- | ..-..
T Consensus 96 ---------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs---K-hikkP 144 (361)
T KOG1523|consen 96 ---------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS---K-HIKKP 144 (361)
T ss_pred ---------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh---h-hhCCc
Confidence 25577889999999999999999 8889999988865432110 0 12244
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcc-------ccccccccEEEEEEecCC
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRS-------FFTEIIASISDIKFAKDG 350 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~~ 350 (509)
+...|.++.|+|++ -+|+.|+.|+..+++..--..+..++ .....+... .+....+.+..+.|+|+|
T Consensus 145 irStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekp-----ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 145 IRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKP-----APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred cccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCC-----CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 67889999999998 89999999999999864322211000 000000000 111235789999999999
Q ss_pred CEEEEe-cCCeEEEEECCCCCCceEEEe
Q 043890 351 RHILSR-DYMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 351 ~~l~s~-~~~~i~iwd~~~~~~~~~~~~ 377 (509)
..|+-. .|..+.+-|...+.+.+....
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchh
Confidence 999985 579999999886443344433
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=144.86 Aligned_cols=240 Identities=15% Similarity=0.174 Sum_probs=179.7
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|+||+|+.||+++|+|+.|..|.+|+-.-.-. .. -.|.
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~------------------------Lk-YSH~--------- 93 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI------------------------LK-YSHN--------- 93 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccce------------------------ee-eccC---------
Confidence 3456999999999999999999999999999998652221 11 2344
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|.+|.| +|-...|++++-+ ..-+|........+.
T Consensus 94 ---D~IQCMsF--NP~~h~LasCsLs-dFglWS~~qK~V~K~-------------------------------------- 129 (1081)
T KOG1538|consen 94 ---DAIQCMSF--NPITHQLASCSLS-DFGLWSPEQKSVSKH-------------------------------------- 129 (1081)
T ss_pred ---CeeeEeec--CchHHHhhhcchh-hccccChhhhhHHhh--------------------------------------
Confidence 78999999 8988899999875 677888765432221
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
.....+.+++|..||++|+.| .||+|.+-+-. ++....+ .
T Consensus 130 ---------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~ 170 (1081)
T KOG1538|consen 130 ---------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----E 170 (1081)
T ss_pred ---------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----e
Confidence 123457889999999999999 99999998654 3333332 2
Q ss_pred ccCCCccceEEEEEeCCCC----cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 274 NMEDLTEVITSAEFHPTHC----NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
...+...+|.+++|+|... ..+++.....++.+|.+.....-. -+.+. -...|+.+.++
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk--~r~L~---------------FdP~CisYf~N 233 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK--DRALN---------------FDPCCISYFTN 233 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc--cccCC---------------CCchhheeccC
Confidence 4456788999999999642 478888888888888877543210 11111 23568899999
Q ss_pred CCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 350 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 350 ~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
|.+++.| +++.+++|.-. +-.+.++.....++. .++..|++++++.|+.||+|--|++-
T Consensus 234 GEy~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIW---------------tV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIW---------------TVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CcEEEEccCCCceEEEeec--CeEEeeccccceeEE---------------EEEEccCCceEEEEEccCeeehhhhH
Confidence 9999986 47999999755 455666655555544 89999999999999999999999864
No 199
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=127.63 Aligned_cols=300 Identities=14% Similarity=0.154 Sum_probs=177.5
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeE
Q 043890 45 AIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 124 (509)
Q Consensus 45 ~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 124 (509)
-++|||+|+++|+.+.- .+.|-|.++.+. .+. +..-+.|.-+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------------------~ql-------------f~cldki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------------------HQL-------------FLCLDKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-----------------------HHH-------------HHHHHHhhhee
Confidence 47899999999998865 788888776655 111 11125688999
Q ss_pred EEEcCCCceEEEe-eCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCC
Q 043890 125 WCQTANGALFLLS-TNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIP 203 (509)
Q Consensus 125 ~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 203 (509)
| ..|..+++.+ ..|+.|.+|++...+-..... ......+...|+|+|+.+ +....-+-
T Consensus 56 W--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---------------eg~agls~~~WSPdgrhi----L~tseF~l 114 (447)
T KOG4497|consen 56 W--KADSCHILCVAYKDPKVQVWSLVQPEWYCKID---------------EGQAGLSSISWSPDGRHI----LLTSEFDL 114 (447)
T ss_pred e--eccceeeeeeeeccceEEEEEeecceeEEEec---------------cCCCcceeeeECCCcceE----eeeeccee
Confidence 9 7888777665 668899999998665333221 123344667899999654 22344445
Q ss_pred ccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCe--EEE-----------EEccCCC------
Q 043890 204 SLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLR--INL-----------WNLEISN------ 262 (509)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~--i~i-----------wd~~~~~------ 262 (509)
.|.+|.+.+...... .-.+..+..++|+|+|++.+.+ .|.. +.+ +++++..
T Consensus 115 riTVWSL~t~~~~~~--------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 115 RITVWSLNTQKGYLL--------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred EEEEEEeccceeEEe--------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 677887766544322 2223345677888888776654 2210 111 1111100
Q ss_pred ----ceeeEeec--cCCcc-CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccC-------------------
Q 043890 263 ----QSFNIVDV--KPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCD------------------- 316 (509)
Q Consensus 263 ----~~~~~~~~--~~~~~-~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------- 316 (509)
....+++. +-..+ ..-.-.+..++|+|.+ ++|++|+.|+.+|+.+--+-+...
T Consensus 187 sPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCCcEEEEecchhhheeeeeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 00000000 00000 1113567889999998 999999999999876543321000
Q ss_pred --Cce------eeecccc-----------------C------CCCccccccccccEEEEEEecCCCEEEEecC---CeEE
Q 043890 317 --SHA------ILFEEQE-----------------A------PGSRSFFTEIIASISDIKFAKDGRHILSRDY---MTLK 362 (509)
Q Consensus 317 --~~~------~~~~~~~-----------------~------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~ 362 (509)
+++ -.|...+ . ..+.........++.-++|++|..++++-.| +.+.
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 000 0000000 0 0000111222456788999999999999753 8899
Q ss_pred EEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 363 LWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 363 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+||++. .+....+.... . |..+.|+|....|+.+.....+++|...-..
T Consensus 346 ~Wdlq~-l~l~avLiQk~-p---------------iraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 346 LWDLQN-LKLHAVLIQKH-P---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred EEechh-hhhhhhhhhcc-c---------------eeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 999996 44444333222 2 2288999999989988888899999987433
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=8.5e-14 Score=134.90 Aligned_cols=314 Identities=23% Similarity=0.386 Sum_probs=213.5
Q ss_pred cceEEEEE-CCCCC-eEEeecC-CCeEEEEEccC-CCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 41 DIISAIEF-DKTGD-HLATGDR-GGRVVLFERTD-TKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 41 ~~I~~v~~-s~~~~-~la~g~~-dg~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..+..+.+ ++++. +++..+. |+.+.+|+... ... ...+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------------------~~~~~~~~----------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL-----------------------IRTLEGHS----------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-----------------------EEEEecCc-----------
Confidence 36777777 88887 5555444 89999999987 333 56777887
Q ss_pred hccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 117 EEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|..+.| +++++.+++++. |+.+++|++..+.....
T Consensus 156 -~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 193 (466)
T COG2319 156 -ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPLST--------------------------------------- 193 (466)
T ss_pred -ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceEEe---------------------------------------
Confidence 77999999 999998888886 99999999987332111
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
+.+|...+.+++|+|++. .++++ .|+.|++||...+.....
T Consensus 194 ------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------- 236 (466)
T COG2319 194 ------------------------------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------- 236 (466)
T ss_pred ------------------------------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-------
Confidence 255888899999999998 66665 899999998874443321
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+..|.... ...|+|++ .++++++.|+.+++||++.... ....+ ..|...+.++.|.|++..+
T Consensus 237 ~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---~~~~~------------~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 237 TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---LLRTL------------SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---EEEEE------------ecCCccEEEEEECCCCCEE
Confidence 355666664 33899998 8899999999999999997652 11222 1234689999999988888
Q ss_pred EEec-CCeEEEEECCCCCCceEEEe--ecccccccccccccCCCccceeeEEEcCCCCEEEEe-eCCCcEEEEeCCCCce
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQ--VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG-SYSNLFRVFGCAPGST 429 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~ 429 (509)
++++ ++.+.+||... ........ .|...+ ..+.|.+++..++.+ ..|+.+.+|++.....
T Consensus 300 ~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 363 (466)
T COG2319 300 ASGSSDGTVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363 (466)
T ss_pred EEeeCCCcEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCce
Confidence 8864 57799998886 44444443 444322 267773343556655 6889999999987762
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCccc-----ceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-Cc
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLS-----SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NS 503 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~ 503 (509)
.. ..... ..+..+.+++ . ....+ .....+.............. ...+....+.+++..++.++. +.
T Consensus 364 ~~-~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
T COG2319 364 LK-TLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGH----TSRVTSLDFSPDGKSLASGSSDNT 435 (466)
T ss_pred eE-EecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCC----CCcEEEEEECCCCcEEEEecCCCc
Confidence 22 22222 2277888887 5 43222 22333322221111111110 167899999999999998655 78
Q ss_pred eEEEe
Q 043890 504 LYMYY 508 (509)
Q Consensus 504 i~v~~ 508 (509)
+.+|+
T Consensus 436 ~~~~~ 440 (466)
T COG2319 436 IRLWD 440 (466)
T ss_pred EEEEe
Confidence 88886
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.4e-15 Score=140.38 Aligned_cols=307 Identities=15% Similarity=0.137 Sum_probs=192.6
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
....|++|+++|+.... ..|.||...++++ .+.+.+|. .++..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~-----------------------i~~l~~~~------------a~l~s~ 63 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGEC-----------------------ITSLEDHT------------APLTSV 63 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhh-----------------------hhhccccc------------Ccccee
Confidence 44678999998887764 4899999999998 67888888 789999
Q ss_pred EEEEcCCC-ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC
Q 043890 124 RWCQTANG-ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI 202 (509)
Q Consensus 124 ~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 202 (509)
.+.+++.. .++.+++.||.|++||...+...+.+....+........ .........+ ...........++....
T Consensus 64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~----~~a~~s~~~~-~s~~~~~~~~~~s~~~~ 138 (792)
T KOG1963|consen 64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKP----AQADISANVY-VSVEDYSILTTFSKKLS 138 (792)
T ss_pred eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEech----hHhCccceeE-eecccceeeeecccccc
Confidence 99655544 578899999999999999998777765554431110000 0000000000 00000000000110000
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccce
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 282 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 282 (509)
...+-..+.... ....-+...|.. -.+|..++.|++.....+..+.+|........... ...-..|...+
T Consensus 139 ~q~~~~~~~t~~-----~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~----~~~~~~Htf~~ 208 (792)
T KOG1963|consen 139 KQSSRFVLATFD-----SAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSS----RDITVHHTFNI 208 (792)
T ss_pred cceeeeEeeecc-----ccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeecc----chhhhhhcccc
Confidence 000000000000 000011123322 45778888888888876677899988874421110 01234467779
Q ss_pred EEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeE
Q 043890 283 TSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTL 361 (509)
Q Consensus 283 ~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i 361 (509)
++.+++|.+ +++|++..||.|.+|.--..+........+.- |...|++++|+++|.+|++|+. +.+
T Consensus 209 t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW------------H~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 209 TCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHW------------HHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred eeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEe------------cccccceeEEecCCceEeecccceEE
Confidence 999999998 99999999999999964331111111233333 4478999999999999999875 999
Q ss_pred EEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 362 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
-+|.+.++. .+-+..-...+ ..+.+|||+.+.+...+|+.|.+-.+.+.+...
T Consensus 276 v~Wq~~T~~--kqfLPRLgs~I---------------~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 276 VLWQLETGK--KQFLPRLGSPI---------------LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred EEEeecCCC--cccccccCCee---------------EEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 999999843 22233233332 289999999999999999999999987655443
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1e-15 Score=129.52 Aligned_cols=266 Identities=10% Similarity=0.123 Sum_probs=168.0
Q ss_pred cceecccceEEEEECC--CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 35 EEVQEVDIISAIEFDK--TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~--~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
+..+|...++.+.|.. ....+.+++.||+|++||+....... ...+..|.+
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a---------------------~~~~~~~~~------ 117 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA---------------------RISWTQQSG------ 117 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh---------------------heeccCCCC------
Confidence 4456888888899987 46889999999999999998776510 233344431
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeC----CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCC
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTN----DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANG 188 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 188 (509)
.+-.+++. +-.++.+++|.. |-.|.+||++..+..
T Consensus 118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------------------- 156 (376)
T KOG1188|consen 118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------------------------- 156 (376)
T ss_pred -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch----------------------------------
Confidence 23455554 446667777743 678899998865421
Q ss_pred CCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceee
Q 043890 189 GSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 266 (509)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~ 266 (509)
++.+...|.+.|+++.|+|. .++|++| .||.|.+||+.....--.
T Consensus 157 ---------------------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 157 ---------------------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred ---------------------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence 11234789999999999996 5788899 899999999986532111
Q ss_pred EeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE
Q 043890 267 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (509)
+ ...-.|...|..+.|..++-+.+.+-+......+|+++.+... ..++.+........-......+-..-.
T Consensus 204 L-----~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~~~~~~~d~r~~~~~dY~I~~~~ 274 (376)
T KOG1188|consen 204 L-----LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE----TWLENPDVSADDLRKEDNCDYVINEHS 274 (376)
T ss_pred H-----HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh----hcccCccchhhhHHhhhhhhheeeccc
Confidence 1 1233467789999999887567888889999999999987631 111111000000000000011111111
Q ss_pred ecCCCEEEE-ecC-CeEEEEECCC--C---CCceEEEee-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCc
Q 043890 347 AKDGRHILS-RDY-MTLKLWDINM--D---SGPVATFQV-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL 418 (509)
Q Consensus 347 s~~~~~l~s-~~~-~~i~iwd~~~--~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 418 (509)
..+...++. +++ +...++-+.. . ...+..+.+ |...+. ++.|...+..+.||++||.
T Consensus 275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR---------------~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR---------------DILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH---------------HHhhhcccceeeccCCCce
Confidence 123334444 454 6666665442 1 123344444 333322 7788888999999999999
Q ss_pred EEEEeCC
Q 043890 419 FRVFGCA 425 (509)
Q Consensus 419 i~iw~~~ 425 (509)
+.+|...
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999964
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=4.5e-14 Score=121.04 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=122.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++++ +.++|+++-.+ .|.|||+.+.+..+.....
T Consensus 88 t~IL~Vrm----Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~------------------------------------- 125 (391)
T KOG2110|consen 88 TSILAVRM----NRKRLVVCLEE-SIYIYDIKDMKLLHTIETT------------------------------------- 125 (391)
T ss_pred CceEEEEE----ccceEEEEEcc-cEEEEecccceeehhhhcc-------------------------------------
Confidence 45899998 55677777666 4999999998876653211
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE---cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
..+...+.++++++.+.+++.- ..|.|.+||..+-+... .
T Consensus 126 -----------------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~--------~ 168 (391)
T KOG2110|consen 126 -----------------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN--------T 168 (391)
T ss_pred -----------------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee--------E
Confidence 2344457677777777888863 58999999998766543 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCe-EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
+..|++.+.+++|+++| .+||+++..|+ |||+.+.+++. ++.|..... ...|.+++|+|++.+|
T Consensus 169 I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~----------~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 169 INAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK----LYEFRRGTY----------PVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE----eeeeeCCce----------eeEEEEEEECCCCCeE
Confidence 67899999999999999 99999999987 78999999875 455543321 1579999999999999
Q ss_pred EEecC-CeEEEEECCC
Q 043890 354 LSRDY-MTLKLWDINM 368 (509)
Q Consensus 354 ~s~~~-~~i~iwd~~~ 368 (509)
++.++ ++|+||.+..
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 99877 9999999875
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=131.28 Aligned_cols=220 Identities=17% Similarity=0.143 Sum_probs=154.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|++|.| +.++++|++|+.|..+++|+++.....++.+
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~K--------------------------------------- 95 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPK--------------------------------------- 95 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCC---------------------------------------
Confidence 88999999 8899999999999999999997543222200
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
++...-..|...|.|++|...+.++.+| .+++|...|+++.+.+... .-.
T Consensus 96 -----------------------PI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~------~~~ 146 (609)
T KOG4227|consen 96 -----------------------PIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA------NEN 146 (609)
T ss_pred -----------------------CceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee------ccc
Confidence 0111114567889999999999999999 9999999999987654321 223
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HILS 355 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s 355 (509)
...+.|..+..+|.. +.|++.+.++.|.+||.+......+ .+-..+ .......+.|+|... +|++
T Consensus 147 ~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN----------~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS---LVLPAN----------SGKNFYTAEFHPETPALILV 212 (609)
T ss_pred CcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc---eeeecC----------CCccceeeeecCCCceeEEe
Confidence 345689999999997 9999999999999999998763221 111111 124678889999655 5556
Q ss_pred ecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 356 RDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 356 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
++. +.+-+||.+++..++....+..+.... -+....+-|+|+|..|++--....-.+||+-+..+.
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~---------~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQE---------NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCccc---------chhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 655 889999999866665544332221110 000127889999999887766666667777654443
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.1e-14 Score=138.63 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=111.1
Q ss_pred EEEEECCCCCEEEEE--cCC--eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CCe--EEE
Q 043890 234 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGS--IRL 306 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~--i~v 306 (509)
....|+|||+.|+.. .+| .|++||+++++.. .+..+...+....|+|++ +.|+..+. ++. |.+
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEE
Confidence 357899999988764 344 5888999875432 233334567789999999 76766654 444 444
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C---CeEEEEECCCCCCceEEEeecccc
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
+|+.++.. ..+... ........|+|||++|+... + ..|.+||+.+ +. ...+.... .
T Consensus 316 ~d~~~g~~-----~~lt~~------------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~ 375 (429)
T PRK03629 316 VNINGGAP-----QRITWE------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L 375 (429)
T ss_pred EECCCCCe-----EEeecC------------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C
Confidence 46665542 222211 12355688999999988742 2 4688899885 33 33333211 1
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeeCCCc---EEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL---FRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
.. ...|+|||++|+.++.++. +++++++ |.... .+.+|.+.+...+|+|
T Consensus 376 ~~---------------~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~-~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DE---------------TPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA-RLPATDGQVKFPAWSP 427 (429)
T ss_pred CC---------------CceECCCCCEEEEEEcCCCceEEEEEECC-CCCeE-ECccCCCCcCCcccCC
Confidence 11 5789999999999988764 7777875 55555 7778888888888887
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.2e-16 Score=134.68 Aligned_cols=201 Identities=15% Similarity=0.246 Sum_probs=141.6
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
.+++|+.+|..||+|+.||.+|||+...... ......|. +.|.+|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----------------------~l~e~~~~------------~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----------------------ILEEIAHH------------AEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-----------------------hhhhHhhc------------Cccccc
Confidence 7899999999999999999999999877665 44555665 779999
Q ss_pred EEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCC
Q 043890 124 RWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIP 203 (509)
Q Consensus 124 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 203 (509)
.| +|||+.|++-+.| ..+||+++++........
T Consensus 193 ~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-------------------------------------------- 225 (398)
T KOG0771|consen 193 DF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP-------------------------------------------- 225 (398)
T ss_pred ee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC--------------------------------------------
Confidence 99 9999999999999 999999999854433210
Q ss_pred ccccccccccccceeeeeeeeeecccccCeEEEEECCCC---CE-EEEE--cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 204 SLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG---ET-FISA--DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~-l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
.........+.|+.++ .+ +++. .-+.|+.|++...... ... +......
T Consensus 226 -----------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l--~~~~~~~ 279 (398)
T KOG0771|consen 226 -----------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL--RLRKKIK 279 (398)
T ss_pred -----------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc--chhhhhh
Confidence 0011113344555444 22 2222 4566777766543321 110 0012222
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR- 356 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~- 356 (509)
-...|++++.+++| ++++.|+.||.|-|++...-+. ++..+ ..|...|+.+.|+||.+++++-
T Consensus 280 ~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~----~~~vk-----------~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 280 RFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQR----LQYVK-----------EAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred ccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeee----eEeeh-----------hhheeeeeeEEEcCCcCcccccc
Confidence 34589999999999 9999999999999999887653 22222 3466899999999999999985
Q ss_pred cCCeEEEEECCC
Q 043890 357 DYMTLKLWDINM 368 (509)
Q Consensus 357 ~~~~i~iwd~~~ 368 (509)
++....|.-+.-
T Consensus 344 s~~~~~v~~l~v 355 (398)
T KOG0771|consen 344 SDNEAAVTKLAV 355 (398)
T ss_pred cCCceeEEEEee
Confidence 457777776653
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.9e-15 Score=143.64 Aligned_cols=303 Identities=14% Similarity=0.205 Sum_probs=185.9
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
-..+.| +|-...++++...-.|+|||.+.++....+...... ....+.+.+... ....+++.+
T Consensus 1067 pk~~~~--hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~------------~t~Vs~l~liNe---~D~aLlLta 1129 (1387)
T KOG1517|consen 1067 PKTLKF--HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP------------DTRVSDLELINE---QDDALLLTA 1129 (1387)
T ss_pred Cceeee--cCCCceeEEcCCcceEEEEecccCceeccccCCCCC------------CCccceeeeecc---cchhheeee
Confidence 456777 777778998887779999999988764433322111 000011111110 123456677
Q ss_pred CCCCccccccccccc--cceeeeeeee---eecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 200 GGIPSLRLPTVTSNE--TSLVARCRRV---YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~--~~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
..++.|++|+-.... .......... ...+..+.-.-++|.....+|+++ +-..|+|||.........+
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di------ 1203 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI------ 1203 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec------
Confidence 888999999843321 1111111111 111111111345676655555554 8889999999976544332
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE-
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH- 352 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~- 352 (509)
..+.+..|+++.-+..++++++.|..||.|++||.|.... ...+..+..+... .+|..+.+.+.|--
T Consensus 1204 -P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~----------~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1204 -PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDV----------EPIVHLSLQRQGLGE 1271 (1387)
T ss_pred -ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCc----------ccceeEEeecCCCcc
Confidence 2234567788877665559999999999999999997642 2234444444311 23999999986654
Q ss_pred EEEec-CCeEEEEECCCC-CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 353 ILSRD-YMTLKLWDINMD-SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
|++|+ +|.|++||+++. ......+..|-..- .. ++++..+++...+|+|+. +.|.||++. |+.+
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG---------s~---lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l 1337 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG---------SA---LTALTVHEHAPIIASGSA-QLIKIYSLS-GEQL 1337 (1387)
T ss_pred eeeeccCCeEEEEecccCcccccceeeeccccC---------cc---ceeeeeccCCCeeeecCc-ceEEEEecC-hhhh
Confidence 77775 699999999973 12222222222100 00 228899999999999998 999999987 6666
Q ss_pred eeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 431 ATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
. .+..+.+- +. .-...+.+++|||-.-+||+|+. +.+.||.
T Consensus 1338 ~-~~k~n~~F--------------------------------~~----q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1338 N-IIKYNPGF--------------------------------MG----QRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred c-ccccCccc--------------------------------cc----CcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 5 44422100 00 00355799999999999999987 6777774
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.1e-15 Score=142.82 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=136.4
Q ss_pred eecccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..|...+.+.+|||||+.||..+.+ ..|++||+.+++. ..+..+.+|
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---------------------~~l~~~~g~--------- 249 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---------------------KVVASFRGH--------- 249 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---------------------EEEecCCCc---------
Confidence 4577889999999999999987643 4799999987654 001222232
Q ss_pred hhhhccceeeEEEEcCCCceEEEee-CCCeEEEEe--ccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLST-NDKTIKFWK--VQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
...++| +|||+.|+.++ .+|.+.||. +.++....
T Consensus 250 ------~~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~----------------------------------- 286 (429)
T PRK01742 250 ------NGAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ----------------------------------- 286 (429)
T ss_pred ------cCceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-----------------------------------
Confidence 346789 99999888765 688777664 43332111
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEe
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~ 268 (509)
+..+...+....|+|+|+.|+.. .+|...||+++........
T Consensus 287 -----------------------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~- 330 (429)
T PRK01742 287 -----------------------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL- 330 (429)
T ss_pred -----------------------------------eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence 12344456778999999987755 5788899987653322221
Q ss_pred eccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 269 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
+ .+.. ....|+|++ +.|+..+.++ +.+||+.+++. ..+... .....+.|+|
T Consensus 331 ------l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~-------------~~~~~~~~sP 381 (429)
T PRK01742 331 ------V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSST-------------FLDESPSISP 381 (429)
T ss_pred ------e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecCC-------------CCCCCceECC
Confidence 1 2222 357899998 7887777765 55699988763 222111 0124577999
Q ss_pred CCCEEEEec-CCeEEEEECC-CCCCceEEEeeccccc
Q 043890 349 DGRHILSRD-YMTLKLWDIN-MDSGPVATFQVHEYLR 383 (509)
Q Consensus 349 ~~~~l~s~~-~~~i~iwd~~-~~~~~~~~~~~~~~~~ 383 (509)
||++|+.++ ++.+.+|++. ..+.....+..|.+.+
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 999999875 4666666652 1256777777766543
No 209
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=115.70 Aligned_cols=260 Identities=13% Similarity=0.144 Sum_probs=162.2
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|..-+| +|.+++|+.|..+|.|.+..+.+-...... +.|+.
T Consensus 11 ~tvf~qa~--sp~~~~l~agn~~G~iav~sl~sl~s~sa~----------~~gk~------------------------- 53 (325)
T KOG0649|consen 11 NTVFAQAI--SPSKQYLFAGNLFGDIAVLSLKSLDSGSAE----------PPGKL------------------------- 53 (325)
T ss_pred HHHHHHhh--CCcceEEEEecCCCeEEEEEehhhhccccC----------CCCCc-------------------------
Confidence 34777788 899999999999999999998753211000 00000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCcee---eEeeccCC-
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF---NIVDVKPA- 273 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~---~~~~~~~~- 273 (509)
.+ ....+|.+++..++|. ..+|+++.||.|+-|..+...... +++..++.
T Consensus 54 -----------------------~i-v~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~ 107 (325)
T KOG0649|consen 54 -----------------------KI-VPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPM 107 (325)
T ss_pred -----------------------ce-eeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCcc
Confidence 00 0127899999999998 467888877999999887543311 11111111
Q ss_pred cc-CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 274 NM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 274 ~~-~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
.. ...-..|+++...|.. +-++.++.|+.++-||+++++. .+++.+ |...|.++.--.....
T Consensus 108 ~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i----~r~~rG------------HtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 108 QVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI----QREYRG------------HTDYVHSVVGRNANGQ 170 (325)
T ss_pred ccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE----EEEEcC------------CcceeeeeeecccCcc
Confidence 00 1112468899999997 7777777999999999999985 455554 5588999988444444
Q ss_pred EEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+++| .||++||||.++ .+.+..+......-. +. -+..+. -.+..-+..+|++|+ ...+.+|.+++.++..
T Consensus 171 ilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~-lR--p~~g~w----igala~~edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNL-LR--PDWGKW----IGALAVNEDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred eeecCCCccEEEEeccc-cceeEEeccccChhh-cC--cccCce----eEEEeccCceEEecC-CCceeEEeccCCCceE
Confidence 5565 579999999998 676666543221100 00 000000 134445677887655 5589999999887776
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCc
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGN 476 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
++... .++..+.|-. +.+....++.+.+.|.+.|.
T Consensus 242 -vfpip-a~v~~v~F~~--------d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 242 -VFPIP-ARVHLVDFVD--------DCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -EEecc-cceeEeeeec--------ceEEEeccccceeeeeeccE
Confidence 54432 2334443322 22333445666666666664
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=7.2e-14 Score=119.41 Aligned_cols=266 Identities=12% Similarity=0.129 Sum_probs=164.2
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
-.+.-++|++.-..+|++..|-.|++|+-..... ..++.-. +..|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrnv 143 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRNV 143 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcce
Confidence 4567899999877889999999999999876332 2232222 1569
Q ss_pred eeeEEEEcCCC-ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 121 NKIRWCQTANG-ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 121 ~~l~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
++++| -|.+ ..|+.|+.. -|.+|..+....... .++ .
T Consensus 144 tclaw--RPlsaselavgCr~-gIciW~~s~tln~~r------~~~---------------------------------~ 181 (445)
T KOG2139|consen 144 TCLAW--RPLSASELAVGCRA-GICIWSDSRTLNANR------NIR---------------------------------M 181 (445)
T ss_pred eEEEe--ccCCcceeeeeecc-eeEEEEcCccccccc------ccc---------------------------------c
Confidence 99999 5543 366777664 699998764321100 000 0
Q ss_pred CCCCccccccccccccceeeeeeeee-ecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVY-AHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
....... .+ -.+| .+|+++.|.+||..++++ .|..|.|||..++....- ..
T Consensus 182 ~s~~~~q-----------------vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------~~ 235 (445)
T KOG2139|consen 182 MSTHHLQ-----------------VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------IP 235 (445)
T ss_pred ccccchh-----------------heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------cc
Confidence 0000000 00 1344 679999999999999988 799999999998764321 11
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
..-+.++-+.|+||+ .+|+.+.-|+..++|+......+ ..+... .+.|...+|+|+|++|+.+
T Consensus 236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~----erw~lg------------sgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK----ERWILG------------SGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred cCCCceeeEEEcCCC-CEEEEecccceeeeehhccccee----cceecc------------CCceeeeeecCCCCEEEEE
Confidence 234678899999999 89999999999999976543211 111111 1579999999999998877
Q ss_pred cCCeEEEEECCCCCCceEEEe-ecccccccccc-----cccCC--CccceeeEEEcCCCCEEEEeeCCC--------cEE
Q 043890 357 DYMTLKLWDINMDSGPVATFQ-VHEYLRPKLCD-----LYEND--SIFDKFECCLSGDGLRVATGSYSN--------LFR 420 (509)
Q Consensus 357 ~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg--------~i~ 420 (509)
..+.-++|.+.-.++...... +....+..+-+ ....+ +--...+++|.|.|.+||+.-+.+ .|.
T Consensus 299 ~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~ 378 (445)
T KOG2139|consen 299 CSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHIS 378 (445)
T ss_pred EcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhh
Confidence 667777777654333221110 00000000000 00000 011123899999999999765433 355
Q ss_pred EEeCCC
Q 043890 421 VFGCAP 426 (509)
Q Consensus 421 iw~~~~ 426 (509)
+||...
T Consensus 379 ~fdtr~ 384 (445)
T KOG2139|consen 379 RFDTRK 384 (445)
T ss_pred hhcccc
Confidence 666553
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=4.7e-15 Score=124.49 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=164.0
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
.+|++.+| ++|+..+|.+..+..|.||.......-..
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~w~~----------------------------------------- 47 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADLWEP----------------------------------------- 47 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCCCCcee-----------------------------------------
Confidence 67999999 99999999999999999999876541110
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
..+ +..|...|++++|+|..+.++++ .|..-++|....+..-... ..+.
T Consensus 48 ------------------------~ht-ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt-----lvLl 97 (361)
T KOG1523|consen 48 ------------------------AHT-LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT-----LVLL 97 (361)
T ss_pred ------------------------cee-hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc-----eeEE
Confidence 011 37788999999999999999999 8999999998544322211 2456
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.++...+++.|+|.+ +.||+|+....|.||-++.....+-..++ . .-+.+.|.++.|+|++-+|++|
T Consensus 98 RiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhi-k-----------kPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 98 RINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHI-K-----------KPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred EeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhh-C-----------CccccceeeeeccCCcceeccc
Confidence 678899999999998 99999999999999988765532110011 1 1123689999999999999998
Q ss_pred c-CCeEEEEECCCCCCceEEEeeccccccc--ccccc--cCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc-ee
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPK--LCDLY--ENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS-TE 430 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~ 430 (509)
+ |+..+||..-- +.+..-.....+-.+ ...+. ....--.++.+.|+|+|..|+-.+.|..+.+=|..... .+
T Consensus 165 s~D~k~rVfSayI--K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 165 STDGKCRVFSAYI--KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred ccCcceeEEEEee--eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 6 79999986431 111110011000000 00000 00111124589999999999999999999999877554 23
Q ss_pred eeeeccCCCceeEEEEc
Q 043890 431 ATTLEASKNPMRRQVQT 447 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s 447 (509)
. .+.....|..++.|-
T Consensus 243 ~-~~~~~~lP~ls~~~i 258 (361)
T KOG1523|consen 243 Q-SVATAQLPLLSVSWI 258 (361)
T ss_pred c-chhhccCCceeeEee
Confidence 2 444433555555443
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=5.5e-14 Score=137.99 Aligned_cols=243 Identities=16% Similarity=0.219 Sum_probs=154.1
Q ss_pred CCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCC
Q 043890 92 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGN 171 (509)
Q Consensus 92 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (509)
+|.+..+..+..|. ..|..++.+ ++++.+|++|+.||+|++|+...-.....
T Consensus 1035 ~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------- 1086 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------- 1086 (1431)
T ss_pred CccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc---------------
Confidence 44455556666665 778888873 45558999999999999999875321100
Q ss_pred cccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC
Q 043890 172 VASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD 250 (509)
Q Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 250 (509)
..+...+| ......+.++...+.++.+|++ .|
T Consensus 1087 ----------------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1087 ----------------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred ----------------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCC
Confidence 01112222 2234568889999999999999 99
Q ss_pred CeEEEEEccCCCce-eeEeeccCCccCCCccceEEEEEeCCCCc-EEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 251 LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 251 g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
|.|++.+++..... .................+..-+|...... .++.+...+.|..||+++....+. ++ ..+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~----lk--~~~ 1193 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR----LK--NQL 1193 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh----hh--cCc
Confidence 99999999862211 11100011122222233333344443323 788888999999999998764321 11 111
Q ss_pred CCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecc-cccccccccccCCCccceeeEEEcCC
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHE-YLRPKLCDLYENDSIFDKFECCLSGD 406 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~ 406 (509)
. .+.|++++.+|.+.+++.|+. |.+.+||++- +.++....... ..+.+ |...-+.|.
T Consensus 1194 ~--------hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~------------v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1194 R--------HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRH------------VWLCPTYPQ 1252 (1431)
T ss_pred c--------ccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccCCcce------------EEeeccCCC
Confidence 1 168999999999999999975 9999999994 67776655322 22221 112223344
Q ss_pred CCEEEEee--CCCcEEEEeCCCCceeeeeeccC
Q 043890 407 GLRVATGS--YSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 407 ~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
....++++ ..+.|.+|++.+|.... ++...
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g~~~~-vl~~s 1284 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGLRQT-VLWAS 1284 (1431)
T ss_pred CceEEEecccCCCceeeeecccCcceE-EEEcC
Confidence 45666555 47899999999997666 66554
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.8e-15 Score=134.66 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=160.3
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
..++.||+ +.|+++.| +.+|.+|++|+.|-.+.|||.-..+....
T Consensus 43 E~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kllhs--------------------- 87 (758)
T KOG1310|consen 43 EAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHS--------------------- 87 (758)
T ss_pred hhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeee---------------------
Confidence 35778888 88999999 99999999999999999999986554332
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRIN 254 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~ 254 (509)
.-.+|...|.++.|-|. .+.+++| .|..|+
T Consensus 88 -----------------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 88 -----------------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred -----------------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 13789999999999884 5678888 999999
Q ss_pred EEEccCCCceeeE--eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcc
Q 043890 255 LWNLEISNQSFNI--VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRS 332 (509)
Q Consensus 255 iwd~~~~~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
++|+...+.-..- ......-+..|...|..++..|++++.+.++++||+|+-||++....|..... .+. ...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~---~~~---~l~ 194 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED---CPS---ILV 194 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc---ccH---HHH
Confidence 9999853211000 00001234568889999999999999999999999999999998664421100 000 000
Q ss_pred ccccccccEEEEEEecCCC-EEEEe-cCCeEEEEECCCCCCceEEEeecccc-------ccc-----cccccc--CCCcc
Q 043890 333 FFTEIIASISDIKFAKDGR-HILSR-DYMTLKLWDINMDSGPVATFQVHEYL-------RPK-----LCDLYE--NDSIF 396 (509)
Q Consensus 333 ~~~~~~~~i~~~~~s~~~~-~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~--~~~~~ 396 (509)
.+...--...++..+|... +|+.| ++-..++||.+...+....-..+... +.. ++..-. ...+.
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 0001113567889999654 66666 46899999955311111100000000 000 000000 00111
Q ss_pred ceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 397 DKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 397 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
-.+-+.|+|+|.-|+..-..-.|+++|++.++...
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 13367899999887776666699999999877665
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=4.4e-14 Score=121.97 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=124.7
Q ss_pred eEEEEECCCC-CEEEEE-cC--CeEEEEEccCCCceeeEeeccCCccC-CCccceEEEEEeCC--CCcEEEEEEcCCeEE
Q 043890 233 INSISNNSDG-ETFISA-DD--LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPT--HCNMLAYSSSKGSIR 305 (509)
Q Consensus 233 v~~i~~~~~~-~~l~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~ 305 (509)
+..+.-++.. ..+++| .. ..+.+||++..+++++-..++...+. .-.-+++++.|-+. . +.|++++.-+.++
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEE
Confidence 3344444443 455557 66 88999999987665543322222111 11346688899887 5 8999999999999
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEE-Eeeccccc
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEYLR 383 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~-~~~~~~~~ 383 (509)
+||.+.++ .++..|+..+ .+++++...|+++++++|.. +.+..||++. ++.+.. +.+-.+.+
T Consensus 230 ~YDt~~qR---RPV~~fd~~E------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 230 LYDTRHQR---RPVAQFDFLE------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI 293 (412)
T ss_pred EecCcccC---cceeEecccc------------CcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCCc
Confidence 99999776 3455555443 68999999999999999976 9999999997 555444 66666655
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
. ++..+|.+++|++++-|..|+|+|+++.+++.
T Consensus 294 r---------------sih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 294 R---------------SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred c---------------eEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 4 88999999999999999999999999876665
No 215
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.6e-12 Score=117.79 Aligned_cols=332 Identities=11% Similarity=0.140 Sum_probs=199.2
Q ss_pred eEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEee
Q 043890 21 EWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTE 100 (509)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (509)
.|+....+..........-....+..+++++|+++|.+. +..++|++...... .+..
T Consensus 15 l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~----------------------~lt~ 71 (566)
T KOG2315|consen 15 LFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV----------------------VLCV 71 (566)
T ss_pred EeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE----------------------EEEe
Confidence 455554443322222221234478899999999999877 45899999887743 0111
Q ss_pred eccCCcchhhccchhhhccceeeEEEEcCCCceEEEee-----C-----CCeEEEEeccchhhhhhhccCCCCCcccCCC
Q 043890 101 FQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLST-----N-----DKTIKFWKVQEKKVKKIADMNVDPSKAVGNG 170 (509)
Q Consensus 101 ~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-----~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 170 (509)
.. ..+.++.| +|-+.+|.+-- . .-.+++|+++++............
T Consensus 72 ~~---------------~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~------- 127 (566)
T KOG2315|consen 72 EL---------------KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN------- 127 (566)
T ss_pred cc---------------ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc-------
Confidence 11 23778888 88888887621 1 346779999985443332221111
Q ss_pred CcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC--CEEEEE
Q 043890 171 NVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG--ETFISA 248 (509)
Q Consensus 171 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~ 248 (509)
. ....|+.+.... .---.+.+.+++..+..... ..-|...+..+.++|.+ ..+|+-
T Consensus 128 -------~-W~~qfs~dEsl~------arlv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 128 -------G-WVPQFSIDESLA------ARLVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred -------C-cccccccchhhh------hhhhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEE
Confidence 1 133444443221 11112235555554422111 12356678889998873 345542
Q ss_pred ------cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc--C---------CeEEEEECCC
Q 043890 249 ------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--K---------GSIRLIDLRQ 311 (509)
Q Consensus 249 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~--d---------g~i~vwd~~~ 311 (509)
.-+.|+||..........+ ....+. ...=..+.|++.|.-+|+.++. | .++++++++.
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~---a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPV---ANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchh---hhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 2467999987632211100 001221 2233468898887555554443 3 3577777773
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cC--CeEEEEECCCCCCceEEEeecccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DY--MTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
.. ..+.... .++|.++.|+|+++-++++ +. ..+.|||++ ..++..+. ++.+.
T Consensus 261 ~s------~~V~L~k-----------~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN---- 315 (566)
T KOG2315|consen 261 ES------VSVPLLK-----------EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRN---- 315 (566)
T ss_pred ce------EEEecCC-----------CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCcc----
Confidence 32 1222211 2799999999999977775 43 899999998 46665553 33333
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeC---CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecC
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSY---SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRG 465 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 465 (509)
++-|+|.|++|+.++- -|.+.|||+.+.+++. .+++-
T Consensus 316 -----------~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~-~~~a~---------------------------- 355 (566)
T KOG2315|consen 316 -----------TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA-KFKAA---------------------------- 355 (566)
T ss_pred -----------ceEECCCCCEEEEeecCCCCCceEEEeccchhhcc-ccccC----------------------------
Confidence 7899999999998876 4799999999877776 43322
Q ss_pred CCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-------CceEEEe
Q 043890 466 SDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-------NSLYMYY 508 (509)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-------~~i~v~~ 508 (509)
.-+-+.|+|||.++++++. +++.||+
T Consensus 356 -----------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 356 -----------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred -----------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 1367899999999998874 6788885
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.5e-14 Score=134.59 Aligned_cols=212 Identities=14% Similarity=0.173 Sum_probs=135.6
Q ss_pred ccceeeEEEEcCCCceEEEeeCC---CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTND---KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..+.+..| +|||+.|+..+.+ ..|.+||+.+++...+
T Consensus 204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-------------------------------------- 243 (433)
T PRK04922 204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV-------------------------------------- 243 (433)
T ss_pred CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 56889999 9999999988743 4699999977653221
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCC--eEEEEEccCCCceeeEeec
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~~~~~ 270 (509)
....+......|+|+|+.++.. .+| .|++||+.+++..
T Consensus 244 --------------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~------ 285 (433)
T PRK04922 244 --------------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT------ 285 (433)
T ss_pred --------------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE------
Confidence 1112223467899999987643 344 6999999876521
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEE-cCCe--EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+..+......++|+|++ +.|+..+ .+|. |.++|+.+++. +.+.... ......+|+
T Consensus 286 ---~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~-----~~lt~~g------------~~~~~~~~S 344 (433)
T PRK04922 286 ---RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSA-----ERLTFQG------------NYNARASVS 344 (433)
T ss_pred ---ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCe-----EEeecCC------------CCccCEEEC
Confidence 233344455678999998 6666655 4454 66667666542 2221110 234468999
Q ss_pred cCCCEEEEec-C---CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC---CcEE
Q 043890 348 KDGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---NLFR 420 (509)
Q Consensus 348 ~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~ 420 (509)
|||++++..+ + ..|.+||+.+ +.. ..+... .... ...|+|||++|+..+.+ +.|+
T Consensus 345 pDG~~Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt~~-~~~~---------------~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 345 PDGKKIAMVHGSGGQYRIAVMDLST-GSV-RTLTPG-SLDE---------------SPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred CCCCEEEEEECCCCceeEEEEECCC-CCe-EECCCC-CCCC---------------CceECCCCCEEEEEEecCCceEEE
Confidence 9999998753 2 3699999975 333 333321 1111 57899999998877653 4688
Q ss_pred EEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 421 VFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 421 iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
++++. +.... .+..+.+.+...+|+|
T Consensus 407 ~~~~~-g~~~~-~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 407 AVSTD-GRVRQ-RLVSADGEVREPAWSP 432 (433)
T ss_pred EEECC-CCceE-EcccCCCCCCCCccCC
Confidence 88886 44444 5655666666666665
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=2.5e-14 Score=128.31 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=132.8
Q ss_pred CCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCC
Q 043890 239 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDS 317 (509)
Q Consensus 239 ~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 317 (509)
.+++--++.| .-|.|.+.|....+ ..+++. ......+..++++.|-|.+...|+++-.+|.+.+||....-....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~-~sklfn---e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFE-VSKLFN---EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhH-HHHhhh---hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3556668888 88999999887522 211110 011223578999999998878999999999999998743210000
Q ss_pred c------------eeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccc
Q 043890 318 H------------AILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRP 384 (509)
Q Consensus 318 ~------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 384 (509)
+ +.+........+.....--.+.|+.++|+|||++||+-+ ||.+||||+.+ .+++..++.--+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 0 001111111111111112245899999999999999965 69999999997 45554444322222
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
.+++|||||+||++|++|--|.||.+..++.+. +-++|.++|..++|.|
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA-RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA-RGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccceEEE-eccccccceeeEeecc
Confidence 299999999999999999999999999999998 9999999999999986
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.4e-13 Score=131.19 Aligned_cols=214 Identities=11% Similarity=0.179 Sum_probs=132.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCC---CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTND---KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..+.+.+| +|||+.|+..+.+ ..|.+||+.+++....
T Consensus 196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-------------------------------------- 235 (427)
T PRK02889 196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-------------------------------------- 235 (427)
T ss_pred CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 56888999 9999999887653 4599999987753221
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEE-E-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
....+......|+|+|+.|+. . .+|...+|.++......
T Consensus 236 --------------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~------- 276 (427)
T PRK02889 236 --------------------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL------- 276 (427)
T ss_pred --------------------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-------
Confidence 111223456889999998875 4 67776666554221111
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECC--CCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLR--QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
..+..+........|+||| +.|+..+ .++...+|.+. ++.. ..+.... .......|+||
T Consensus 277 ~~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~g------------~~~~~~~~SpD 338 (427)
T PRK02889 277 RRLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-----QRVTFTG------------SYNTSPRISPD 338 (427)
T ss_pred EECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-----EEEecCC------------CCcCceEECCC
Confidence 1333444455678999999 6665544 45666666554 3321 1111110 12345789999
Q ss_pred CCEEEEec-C---CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC---cEEEE
Q 043890 350 GRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN---LFRVF 422 (509)
Q Consensus 350 ~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw 422 (509)
|++|+..+ + ..|.+||+.+ +. ...+.... ... ...|+|||+.|+.++.++ .+++.
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~-g~-~~~lt~~~-~~~---------------~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLAT-GQ-VTALTDTT-RDE---------------SPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCC-CC-eEEccCCC-Ccc---------------CceECCCCCEEEEEEecCCCEEEEEE
Confidence 99998754 2 2699999986 33 23333221 111 679999999998887644 35566
Q ss_pred eCCCCceeeeeeccCCCceeEEEEcC
Q 043890 423 GCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
++. |.... .+..+.+.+...+|+|
T Consensus 401 ~~~-g~~~~-~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 401 SSD-GRIKQ-RLSVQGGDVREPSWGP 424 (427)
T ss_pred ECC-CCceE-EeecCCCCCCCCccCC
Confidence 664 55554 6666666667777766
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=7.4e-16 Score=135.51 Aligned_cols=268 Identities=14% Similarity=0.133 Sum_probs=194.8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.-..+.+ +.+|++|+.++.-|.|-.+|+.++++...+.
T Consensus 131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------------------------------------- 168 (545)
T KOG1272|consen 131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------------------------------------- 168 (545)
T ss_pred CCeeeee--cCCccEEEecCCccceeeeecccceeeeeee----------------------------------------
Confidence 3466777 8999999999999999999999887543311
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
-...|.++.|-.+.+++|++....++|||-...+ +- -+..
T Consensus 169 ------------------------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE-lH--------Clk~- 208 (545)
T KOG1272|consen 169 ------------------------------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE-LH--------CLKR- 208 (545)
T ss_pred ------------------------------hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-Ee--------ehhh-
Confidence 1234778889888999999988899999966432 21 2222
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD- 357 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~- 357 (509)
...|..+.|-|.. .+|++++..|.++--|+.+++++ ..+.... +.+..++-+|-+..+-.|.
T Consensus 209 ~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklV----a~~~t~~------------G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 209 HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLV----ASIRTGA------------GRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred cCchhhhcccchh-heeeecccCCceEEEeechhhhh----HHHHccC------------CccchhhcCCccceEEEcCC
Confidence 3578899999997 89999999999999999999863 2232222 5677788888888888874
Q ss_pred CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 358 YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 358 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
.|+|.+|...+ ..++..+..|.+.+. ++++.++|+|+||++.|..++|||++.-..+. ++..
T Consensus 272 nGtVSlWSP~s-kePLvKiLcH~g~V~---------------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~-t~~t- 333 (545)
T KOG1272|consen 272 NGTVSLWSPNS-KEPLVKILCHRGPVS---------------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH-TYRT- 333 (545)
T ss_pred CceEEecCCCC-cchHHHHHhcCCCcc---------------eEEECCCCcEEeecccccceeEeeeccccccc-eeec-
Confidence 59999999997 788888888988876 99999999999999999999999999766665 4444
Q ss_pred CCceeEEEEcCCCCCC-cccceeeEeecCCCCC-cccCCCcccccccceEEEEEcCCCcEEEEEecCc
Q 043890 438 KNPMRRQVQTPSRPSR-SLSSITRVVRRGSDVP-GVDTNGNSFDFTTKLLHLAWHPTENSIACAAANS 503 (509)
Q Consensus 438 ~~~v~~~~~s~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 503 (509)
..+...+++|..+--. ..+.-+.+|....... .....-..-....+|..+.|.|-+..|-+|-.++
T Consensus 334 p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 334 PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4566777777655432 2334455554211100 0000000001256899999999999998887643
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.3e-13 Score=128.66 Aligned_cols=211 Identities=9% Similarity=0.072 Sum_probs=134.6
Q ss_pred ccceeeEEEEcCCCceEEEeeC---CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTN---DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..+...+| +|||+.|+..+. +..|.+||+.+++...+
T Consensus 202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 66899999 999999988764 46899999987643211
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCC--eEEEEEccCCCceeeEeec
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~~~~~ 270 (509)
..+.+.+...+|+|+|+.|+.. .++ .|++||++++...
T Consensus 242 --------------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~------ 283 (435)
T PRK05137 242 --------------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT------ 283 (435)
T ss_pred --------------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE------
Confidence 2223345677899999987644 444 4777788765421
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEc-CC--eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+..+........|+|++ +.|+..+. +| .|.++|+..+.. +.+... ...+....|+
T Consensus 284 ---~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~------------~~~~~~~~~S 342 (435)
T PRK05137 284 ---RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP-----RRISFG------------GGRYSTPVWS 342 (435)
T ss_pred ---EccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe-----EEeecC------------CCcccCeEEC
Confidence 334455556779999998 76666553 33 678888776542 222211 1345668899
Q ss_pred cCCCEEEEec-C---CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC------C
Q 043890 348 KDGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS------N 417 (509)
Q Consensus 348 ~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g 417 (509)
|||+.|+... + ..|.+||+.. .....+... .... ...|+|||+.|+..+.+ .
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~-~~~~---------------~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSG-FLVE---------------GPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCC--CceEeccCC-CCCC---------------CCeECCCCCEEEEEEccCCCCCcc
Confidence 9999998753 2 4688888764 223333221 1111 68999999998876543 3
Q ss_pred cEEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 418 LFRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 418 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
.++++++..+.. . .+.. .+.+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~-~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-R-EVPT-PGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-E-EccC-CCCccCcccCC
Confidence 588888875544 3 3432 33345555654
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=9.6e-14 Score=116.17 Aligned_cols=152 Identities=19% Similarity=0.328 Sum_probs=106.1
Q ss_pred EEEECCCCCEEEEE-c----------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEE--EEcC
Q 043890 235 SISNNSDGETFISA-D----------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSK 301 (509)
Q Consensus 235 ~i~~~~~~~~l~~~-~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~--~~~d 301 (509)
.+.|+++|++|++- . -+...+|.++........+ .+. ..++|.+++|+|++ +.|++ |..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccCC
Confidence 57899999988754 3 1446666665443322211 122 34569999999998 55543 4457
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----CCeEEEEECCCCCCceEEEe
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~ 377 (509)
+.|.+||++... +..+.. ..++.+.|+|+|++|+.++ .|.|.+||.++ .+.+....
T Consensus 83 ~~v~lyd~~~~~-----i~~~~~--------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~ 142 (194)
T PF08662_consen 83 AKVTLYDVKGKK-----IFSFGT--------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE 142 (194)
T ss_pred cccEEEcCcccE-----eEeecC--------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc
Confidence 899999997332 344432 4678899999999999874 27899999995 55555543
Q ss_pred ecccccccccccccCCCccceeeEEEcCCCCEEEEeeC------CCcEEEEeCCCCceee
Q 043890 378 VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY------SNLFRVFGCAPGSTEA 431 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~ 431 (509)
... . ..++|+|||++|+++.. |+.++||+.. |+++.
T Consensus 143 ~~~--~---------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 143 HSD--A---------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cCc--E---------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 221 1 28999999999999874 7899999986 76665
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=3.9e-12 Score=107.18 Aligned_cols=163 Identities=10% Similarity=0.169 Sum_probs=113.2
Q ss_pred ccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEE-EEcCCeEEEEE
Q 043890 230 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLID 308 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~-~~~dg~i~vwd 308 (509)
..+|.++.+.++ .+++.-.+.|++|...+.-+....+ ..........+++-..+. .+||. |-.-|.|.|-|
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~-----et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVI-----ETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVD 165 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeee-----ecccCCCceEeecCCCCc-eEEEcCCCccceEEEEE
Confidence 456888888764 5777767899999988543333221 111122233333333332 44554 33468999999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-C-eEEEEECCCCCCceEEEeecccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
+...+. . ...+..+|.+.|.+++.+.+|..+|+++. | -|||||..+ +.++..++.......
T Consensus 166 L~~~~~-----~---------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~-- 228 (346)
T KOG2111|consen 166 LASTKP-----N---------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRAD-- 228 (346)
T ss_pred hhhcCc-----C---------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchhe--
Confidence 987652 0 12345667799999999999999999975 4 589999997 677777765433221
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
|++++|||++.+||++++.|+|+||.++...
T Consensus 229 -----------iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 -----------IYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -----------EEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 4499999999999999999999999998543
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.6e-12 Score=119.91 Aligned_cols=323 Identities=12% Similarity=0.117 Sum_probs=177.9
Q ss_pred CeE-EeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC
Q 043890 53 DHL-ATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 131 (509)
Q Consensus 53 ~~l-a~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 131 (509)
+++ ++-..+|.|.|.|..+.+. ...+.... ..-..+.| ++||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~--s~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKF--SPDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE---TT-S
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEe--cCCC
Confidence 444 3455679999999998876 45554332 22234567 9999
Q ss_pred ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccccc
Q 043890 132 ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVT 211 (509)
Q Consensus 132 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 211 (509)
+++++++.||.|.++|+.+.+......
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~----------------------------------------------------- 75 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIK----------------------------------------------------- 75 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-----------------------------------------------------
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEe-----------------------------------------------------
Confidence 999999999999999999886433211
Q ss_pred ccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC
Q 043890 212 SNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 289 (509)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 289 (509)
. .....+++++++|++++++ ..+.+.++|.++.+....+. ............+.++..+|
T Consensus 76 ---------------~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~-~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 76 ---------------V--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP-TGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp ------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-S
T ss_pred ---------------c--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc-cccccccccCCCceeEEecC
Confidence 1 1236789999999999987 69999999999877554431 11011112455778888888
Q ss_pred CCCcEEEEEEc-CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEEC
Q 043890 290 THCNMLAYSSS-KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDI 366 (509)
Q Consensus 290 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~ 366 (509)
.. ..++..-. .+.|-+.|....+.. ....+... .......|+|++++++.+. .+.|-++|.
T Consensus 138 ~~-~~fVv~lkd~~~I~vVdy~d~~~~--~~~~i~~g-------------~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 138 GR-PEFVVNLKDTGEIWVVDYSDPKNL--KVTTIKVG-------------RFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp SS-SEEEEEETTTTEEEEEETTTSSCE--EEEEEE---------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred CC-CEEEEEEccCCeEEEEEecccccc--ceeeeccc-------------ccccccccCcccceeeecccccceeEEEee
Confidence 87 54555444 588888888765421 11222222 3567889999999887763 389999999
Q ss_pred CCCCCceEEEeecccc-cccccccccCCCccceeeEEEc--CCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 367 NMDSGPVATFQVHEYL-RPKLCDLYENDSIFDKFECCLS--GDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 367 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
.+ .+.+..+...... ......+.+.. . ...|. ..+...++.-....+.+|+..+.+.++ .++...++ .-
T Consensus 202 ~~-~k~v~~i~~g~~p~~~~~~~~php~--~---g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~-~I~~~G~g-lF 273 (369)
T PF02239_consen 202 KT-GKLVALIDTGKKPHPGPGANFPHPG--F---GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK-TIPTQGGG-LF 273 (369)
T ss_dssp TT-TEEEEEEE-SSSBEETTEEEEEETT--T---EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE-EEE-SSSS---
T ss_pred cc-ceEEEEeeccccccccccccccCCC--c---ceEEeeccccceecccccCCccccchhhcCeEEE-EEECCCCc-ce
Confidence 86 4444443321110 00000000000 0 22232 223333333334467789999888888 88887766 66
Q ss_pred EEEcCCCCCCcccceeeEeecCCCCCcccCCCccc----c--cccceEEEEEcCCCcEEEEEec--C-ceEEEeC
Q 043890 444 QVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSF----D--FTTKLLHLAWHPTENSIACAAA--N-SLYMYYA 509 (509)
Q Consensus 444 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~p~~~~la~~~~--~-~i~v~~~ 509 (509)
+..+|+++...+.... ......++.++...... . ...++.++.|+++|+.+.++.. + .|.||++
T Consensus 274 i~thP~s~~vwvd~~~--~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFL--NPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE--TT-SEEEEE-TT---SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eecCCCCccEEeeccC--CCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 7778887764332000 00112222233222211 1 1235999999999998777665 4 7888875
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=121.09 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=125.0
Q ss_pred eEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC
Q 043890 123 IRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI 202 (509)
Q Consensus 123 l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 202 (509)
.+| +|+|+++|+++.- .+.|-|.++-+..+.+..
T Consensus 14 c~f--Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c------------------------------------------- 47 (447)
T KOG4497|consen 14 CSF--SPCGNYIASLSRY-RLVIRDSETLQLHQLFLC------------------------------------------- 47 (447)
T ss_pred eeE--CCCCCeeeeeeee-EEEEeccchhhHHHHHHH-------------------------------------------
Confidence 345 9999999999876 888888888776655321
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCcc
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 280 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
-+.|.-+.|..+..+++++ .++.|.+|++...+... .+.....
T Consensus 48 ---------------------------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--------kIdeg~a 92 (447)
T KOG4497|consen 48 ---------------------------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--------KIDEGQA 92 (447)
T ss_pred ---------------------------HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE--------EeccCCC
Confidence 1235667888888888877 69999999999776543 3456678
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC--
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-- 358 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 358 (509)
++.++.|+|+|..+|.+...+-.|.+|.+.+.+. ..++-.+ ..+..++|+|||++.+.++.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-----~~~~~pK------------~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-----YLLPHPK------------TNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEecccee-----EEecccc------------cCceeEEECCCCceeeeeeccc
Confidence 9999999999977788888899999999998763 3333222 45788999999999998753
Q ss_pred --CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 359 --MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 359 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
..+.|..-.. ...++.+...+...+ .+.|+|||..||.
T Consensus 156 Ckdyv~i~~c~~-W~ll~~f~~dT~Dlt---------------gieWsPdg~~laV 195 (447)
T KOG4497|consen 156 CKDYVQISSCKA-WILLKEFKLDTIDLT---------------GIEWSPDGNWLAV 195 (447)
T ss_pred HHHHHHHHhhHH-HHHHHhcCCCccccc---------------CceECCCCcEEEE
Confidence 2233332221 233334433332222 7899999998874
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.6e-13 Score=128.34 Aligned_cols=208 Identities=10% Similarity=0.101 Sum_probs=131.7
Q ss_pred ecccceEEEEECCCCCeEEeec---CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 38 QEVDIISAIEFDKTGDHLATGD---RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~---~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+.+.+.+|||||+.||..+ .+..|.+|++.+++. ..+....
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------------------------~~l~~~~--------- 242 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------------------RQVASFP--------- 242 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------------------------EEccCCC---------
Confidence 3567899999999999988653 245799999987654 1111111
Q ss_pred hhhccceeeEEEEcCCCceEEEe-eCCC--eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 115 EIEEKINKIRWCQTANGALFLLS-TNDK--TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
+.+....| +|||+.|+.. +.+| .|.+||+.+++....
T Consensus 243 ---~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l----------------------------------- 282 (429)
T PRK03629 243 ---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV----------------------------------- 282 (429)
T ss_pred ---CCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-----------------------------------
Confidence 23456789 9999988865 4444 588888876643221
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c-CCeEEEE--EccCCCceeeE
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D-DLRINLW--NLEISNQSFNI 267 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-dg~i~iw--d~~~~~~~~~~ 267 (509)
..+...+....|+|+|+.|+.. + ++...+| |+.+++. .
T Consensus 283 -----------------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~-- 324 (429)
T PRK03629 283 -----------------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-Q-- 324 (429)
T ss_pred -----------------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-E--
Confidence 1122345678999999988766 3 4544555 5554432 1
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcC---CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
.+...........|+|+| +.++..+.+ ..|.+||+.++.. +.+... ......
T Consensus 325 ------~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~~-------------~~~~~p 379 (429)
T PRK03629 325 ------RITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTDT-------------FLDETP 379 (429)
T ss_pred ------EeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCCC-------------CCCCCc
Confidence 122233345678999999 777665543 3588899987752 333211 112357
Q ss_pred EEecCCCEEEEec-C---CeEEEEECCCCCCceEEEeeccccc
Q 043890 345 KFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 345 ~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
.|+|||++|+.++ + ..+.++++. +.....+..+.+.+
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~~ 420 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV 420 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCCc
Confidence 8999999998864 3 347778885 45566666665543
No 226
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.2e-13 Score=124.66 Aligned_cols=285 Identities=12% Similarity=0.153 Sum_probs=183.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
......|++|+.+..|+|.|+.||.++|..+.+....... ..++...+..+.+.+.||. +
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~--------~glaa~snLsmNQtLeGH~------------~ 72 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK--------SGLAAASNLSMNQTLEGHN------------A 72 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc--------cccccccccchhhhhccCc------------c
Confidence 4567899999999999999999999999999876552111 1122222334457889998 8
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|..+.| +.+.+.|-+...+|.|.||-+-.+.-.....
T Consensus 73 sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------------------------------- 110 (1189)
T KOG2041|consen 73 SVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------------------------------- 110 (1189)
T ss_pred eEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh----------------------------------------
Confidence 8999999 8888899999999999999998776332211
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
-.....-|.+++|+.+|..++.. .||.|.+=.++..+ +.. ..+.+
T Consensus 111 ---------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg------KeLkg 156 (1189)
T KOG2041|consen 111 ---------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG------KELKG 156 (1189)
T ss_pred ---------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc------hhcch
Confidence 02234558899999999999999 99999887776433 211 12222
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe--------cC
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA--------KD 349 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------~~ 349 (509)
.....+.|++|. ..++.+-.+|.+.+||....-. +.++....-.-...++.....|..+.|. ||
T Consensus 157 --~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~-----~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 157 --QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFE-----RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred --heccceeecccH-HHHHhhhcCCcEEEecccccHH-----HhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 233478999998 8888888899999999775421 0011000000000011111234555553 47
Q ss_pred CCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC---------cE
Q 043890 350 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN---------LF 419 (509)
Q Consensus 350 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~i 419 (509)
...|+.+-+ |.+.|..-.+...++..-.+.. +..+.|+++|..||.++.+. .|
T Consensus 229 rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~da~~~~d~n~v 291 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDSDADEPTDSNKV 291 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcccccCccccceE
Confidence 778888754 8888876665444443322211 22789999999999998752 44
Q ss_pred EEEeCCCCceeeeeeccCCCceeEEEE
Q 043890 420 RVFGCAPGSTEATTLEASKNPMRRQVQ 446 (509)
Q Consensus 420 ~iw~~~~~~~~~~~~~~~~~~v~~~~~ 446 (509)
.+|..- |+.+. +++....-++.++|
T Consensus 292 ~Fysp~-G~i~g-tlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 292 HFYSPY-GHIVG-TLKVPGSCITGLSW 316 (1189)
T ss_pred EEeccc-hhheE-EEecCCceeeeeEE
Confidence 444432 44444 44444444444433
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3e-13 Score=122.55 Aligned_cols=262 Identities=15% Similarity=0.225 Sum_probs=162.2
Q ss_pred hhhccchhhhccceeeEEEEcCCCceE-EEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCcccc
Q 043890 108 FDYLKSLEIEEKINKIRWCQTANGALF-LLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLA 186 (509)
Q Consensus 108 ~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (509)
.+.++.+++...-+.|.. +|||+|+ ++|..--.|++||+.+-.++.......+.+.+. ....+.+..++..
T Consensus 42 ieLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fe------iLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 42 IELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFE------ILSDDYSKSVFLQ 113 (703)
T ss_pred HHHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEE------EeccchhhheEee
Confidence 344667777788899999 9999986 556678899999998776554433333332221 1112222222222
Q ss_pred CCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEEC-CCCCEEEEEcCCeEEEEEccCCCcee
Q 043890 187 NGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNN-SDGETFISADDLRINLWNLEISNQSF 265 (509)
Q Consensus 187 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~dg~i~iwd~~~~~~~~ 265 (509)
..+.+. +..-.|....+++ ...-++++++ |...+++.|....|+-++++.+..+.
T Consensus 114 ~DR~Ie--fHak~G~hy~~RI----------------------P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~ 169 (703)
T KOG2321|consen 114 NDRTIE--FHAKYGRHYRTRI----------------------PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN 169 (703)
T ss_pred cCceee--ehhhcCeeeeeec----------------------CcCCccccccCCCccEEEeecCcceEEEEcccccccc
Confidence 222110 0000111111111 1123455554 34556666666779999999887542
Q ss_pred eEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE
Q 043890 266 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
.+....+.++++..++.. .+|++|+.+|.|..||.++...+ .++......... ........|+++.
T Consensus 170 --------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv----~~l~~~~~v~s~-pg~~~~~svTal~ 235 (703)
T KOG2321|consen 170 --------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRV----GTLDAASSVNSH-PGGDAAPSVTALK 235 (703)
T ss_pred --------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhh----eeeecccccCCC-ccccccCcceEEE
Confidence 445556889999999997 89999999999999999987753 333322210000 0111124599999
Q ss_pred EecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCC--CCEEEEeeCCCcEEEE
Q 043890 346 FAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGD--GLRVATGSYSNLFRVF 422 (509)
Q Consensus 346 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw 422 (509)
|+.+|-.+++|+ .|.+.|||+++ .+++.. +.|..... |..+.|.+. ...|++ .....++||
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S-~Dk~~~kiW 299 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVS-MDKRILKIW 299 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEe-cchHHhhhc
Confidence 999999999996 49999999997 455433 34444332 226788664 344554 345689999
Q ss_pred eCCCCceee
Q 043890 423 GCAPGSTEA 431 (509)
Q Consensus 423 ~~~~~~~~~ 431 (509)
|-.+|+...
T Consensus 300 d~~~Gk~~a 308 (703)
T KOG2321|consen 300 DECTGKPMA 308 (703)
T ss_pred ccccCCcee
Confidence 999998876
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=6.7e-13 Score=119.37 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=97.9
Q ss_pred cCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCc-------------eeeEeecc-------CCccCCCccceEEEEEe
Q 043890 231 YHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ-------------SFNIVDVK-------PANMEDLTEVITSAEFH 288 (509)
Q Consensus 231 ~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~-------------~~~~~~~~-------~~~~~~~~~~i~~l~~~ 288 (509)
..|+++.|-|.+ ..++++ .+|.+++||..-... .+.+..-+ ...+.--...|..++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 569999998754 445555 899999997642110 00000000 00111224578999999
Q ss_pred CCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECC
Q 043890 289 PTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDIN 367 (509)
Q Consensus 289 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~ 367 (509)
||| ++||+.+.||.+||||..+.++. -.++. +=+...|++|||||+|+++|+ |.-|.||.+.
T Consensus 300 ~DG-~~LA~VSqDGfLRvF~fdt~eLl----g~mkS------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 300 PDG-KYLATVSQDGFLRIFDFDTQELL----GVMKS------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred CCC-ceEEEEecCceEEEeeccHHHHH----HHHHh------------hccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 998 99999999999999999987652 12221 116899999999999999986 5999999999
Q ss_pred CCCCceEEEeecccccc
Q 043890 368 MDSGPVATFQVHEYLRP 384 (509)
Q Consensus 368 ~~~~~~~~~~~~~~~~~ 384 (509)
. .+.+..-.+|..++.
T Consensus 363 e-rRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 363 E-RRVVARGQGHKSWVS 378 (636)
T ss_pred c-ceEEEecccccccee
Confidence 5 788888888888876
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.4e-13 Score=120.87 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=121.6
Q ss_pred ccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc-----cceEEEEEeCCCCcEEEEEEcC
Q 043890 228 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-----EVITSAEFHPTHCNMLAYSSSK 301 (509)
Q Consensus 228 ~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~~l~~~~~d 301 (509)
...+.++++..++-..+|++| .+|.|..||.+....+..+ ... .....|. ..|+++.|+.+| -.+++|..+
T Consensus 173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l-~~~-~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~ 249 (703)
T KOG2321|consen 173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL-DAA-SSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTST 249 (703)
T ss_pred cccccceeeeecCccceEEecccCceEEEecchhhhhheee-ecc-cccCCCccccccCcceEEEecCCc-eeEEeeccC
Confidence 344679999999999999999 8999999999976543332 111 1222333 349999999998 999999999
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--CCEEEEecCCeEEEEECCCCCCceEEEeec
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--GRHILSRDYMTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~ 379 (509)
|.+.|||+++.+. .....|. ...+|..+.|.+. +..+++.+...++|||-.+ ++++..+...
T Consensus 250 G~v~iyDLRa~~p-----l~~kdh~----------~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt 313 (703)
T KOG2321|consen 250 GSVLIYDLRASKP-----LLVKDHG----------YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPT 313 (703)
T ss_pred CcEEEEEcccCCc-----eeecccC----------CccceeeecccccCCCceEEecchHHhhhccccc-CCceeecccc
Confidence 9999999999873 2222221 1257899999775 5677777669999999987 6666655432
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
.. + ..+|+-|++.+++++-+++.+..|=+..
T Consensus 314 ~~-l---------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 314 SD-L---------------NDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CC-c---------------CceeeecCCceEEEecCCCcceeEEccc
Confidence 22 2 2889999999999999998888776653
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.1e-10 Score=100.95 Aligned_cols=296 Identities=13% Similarity=0.204 Sum_probs=183.5
Q ss_pred CcceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCC
Q 043890 17 PQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHP 93 (509)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (509)
.+-..|++-..-+....-.+..+.+..+=|+|+|++++|.++..+ |.|..|.++...-
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G------------------- 76 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG------------------- 76 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC-------------------
Confidence 344568887555544445556688889999999999999988654 7788888875322
Q ss_pred cceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeC-CCeEEEEeccc-hhhhhhhccCCCCCcccCCCC
Q 043890 94 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQE-KKVKKIADMNVDPSKAVGNGN 171 (509)
Q Consensus 94 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (509)
..++..+.. ....+-..+++ +++|++++++.. .|.|.++-+++ |............
T Consensus 77 ----~Lt~ln~~~--------~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~-------- 134 (346)
T COG2706 77 ----RLTFLNRQT--------LPGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT-------- 134 (346)
T ss_pred ----eEEEeeccc--------cCCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC--------
Confidence 011111110 00022367888 999999999976 58999999865 4332221100000
Q ss_pred cccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--c
Q 043890 172 VASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--D 249 (509)
Q Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~ 249 (509)
+.+ . . -+.....+....+.|++++|++. .
T Consensus 135 ---------------------------g~~-p----------~-----------~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 135 ---------------------------GSG-P----------H-----------ERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred ---------------------------CCC-C----------C-----------ccccCCccceeeeCCCCCEEEEeecC
Confidence 000 0 0 01111226678899999999987 5
Q ss_pred CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 250 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
--.|.+|++..+..... .+..+ .-....+.|.|+|++ ++..... -+++|.+|..+..... +..++.....
T Consensus 166 ~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tl 236 (346)
T COG2706 166 TDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTL 236 (346)
T ss_pred CceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccC
Confidence 66899999996542211 11122 345667899999999 6655544 4999999999874211 2222211100
Q ss_pred CCccccccccccEEEEEEecCCCEEEEecC--CeEEEEECCCCCCceEEEeec---ccccccccccccCCCccceeeEEE
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRDY--MTLKLWDINMDSGPVATFQVH---EYLRPKLCDLYENDSIFDKFECCL 403 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~ 403 (509)
...+.+ .....++..++||++|.++.. ..|.+|.+......+...... ..... .+.|
T Consensus 237 --P~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR---------------~F~i 298 (346)
T COG2706 237 --PEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR---------------DFNI 298 (346)
T ss_pred --ccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc---------------ccee
Confidence 001111 246788999999999999853 789999888644444433321 11111 7899
Q ss_pred cCCCCEEEEeeCC-CcEEEEeCC--CCce
Q 043890 404 SGDGLRVATGSYS-NLFRVFGCA--PGST 429 (509)
Q Consensus 404 s~~~~~l~~~~~d-g~i~iw~~~--~~~~ 429 (509)
++.+++|+++.++ ..|.+|.++ +|++
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 9999999998875 478888775 4543
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.8e-13 Score=114.46 Aligned_cols=167 Identities=11% Similarity=0.138 Sum_probs=115.2
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
..++.++|++.-..|+++ .|-.|++||-.. .....+ -......|++++|.|.+...|++|+..| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------ks~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------cchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 457889999977778888 899999999776 322111 1223568999999999878888888765 899987
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
.........++....+. ...-...+| .+|+++.|.+||..+++++ +..|+|||..++ ..+.......+...
T Consensus 170 s~tln~~r~~~~~s~~~--~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~s--- 242 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHH--LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFS--- 242 (445)
T ss_pred Ccccccccccccccccc--hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-CcccccccCCCcee---
Confidence 65433222222221111 111223444 5899999999999999985 489999999973 33222211122221
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
-+.|||||.+|..+.-|+..++|+..
T Consensus 243 ------------lLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 243 ------------LLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred ------------eEEEcCCCCEEEEecccceeeeehhc
Confidence 68999999999999999999999654
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.5e-13 Score=128.29 Aligned_cols=206 Identities=13% Similarity=0.104 Sum_probs=130.8
Q ss_pred eecccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..|...+.+.+|+|||+.||..+.+ ..|++||+.+++. ..+..+.
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------------------------~~l~~~~-------- 247 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------------------------ELVASFR-------- 247 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------------------------EEeccCC--------
Confidence 4467789999999999999987643 4699999987654 2222222
Q ss_pred hhhhccceeeEEEEcCCCceEEE-eeCCC--eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLL-STNDK--TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
+......| +|||+.|+. .+.+| .|.+||+.+++....
T Consensus 248 ----g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l---------------------------------- 287 (433)
T PRK04922 248 ----GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL---------------------------------- 287 (433)
T ss_pred ----CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC----------------------------------
Confidence 33557889 999997764 45555 588888877643221
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCe--EEEEEccCCCceee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLR--INLWNLEISNQSFN 266 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~--i~iwd~~~~~~~~~ 266 (509)
..+.......+|+|+|+.|+.. .+|. |+++++.+++. ..
T Consensus 288 ------------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~ 330 (433)
T PRK04922 288 ------------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ER 330 (433)
T ss_pred ------------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EE
Confidence 2222234467899999988766 3454 66666655432 11
Q ss_pred EeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC---eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 267 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
+..+......++|+|+| +.++..+.++ .|.+||+.+++. ..+... .....
T Consensus 331 --------lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~~-------------~~~~~ 383 (433)
T PRK04922 331 --------LTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTPG-------------SLDES 383 (433)
T ss_pred --------eecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCCC-------------CCCCC
Confidence 11122334578999999 7777655433 699999987763 222211 12345
Q ss_pred EEEecCCCEEEEec-C---CeEEEEECCCCCCceEEEeecc
Q 043890 344 IKFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 344 ~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
..|+|||++++..+ + ..|.++++. +.....+..+.
T Consensus 384 p~~spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~ 422 (433)
T PRK04922 384 PSFAPNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSAD 422 (433)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCC
Confidence 68999999887753 1 567788876 34455555443
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=2.5e-12 Score=118.71 Aligned_cols=263 Identities=14% Similarity=0.150 Sum_probs=156.5
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
..+.|+|||+++++.+.||.|.++|+.+.+. ...+... ....++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------------v~~i~~G-------------~~~~~i 83 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------------VATIKVG-------------GNPRGI 83 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------------EEEEE-S-------------SEEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------------EEEEecC-------------CCcceE
Confidence 4578999999999999999999999998887 4444432 336778
Q ss_pred EEEEcCCCceEEEee-CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC
Q 043890 124 RWCQTANGALFLLST-NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI 202 (509)
Q Consensus 124 ~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 202 (509)
++ ++||++++++. .++.+.++|.++.+..+........
T Consensus 84 ~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~--------------------------------------- 122 (369)
T PF02239_consen 84 AV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP--------------------------------------- 122 (369)
T ss_dssp EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE----------------------------------------
T ss_pred EE--cCCCCEEEEEecCCCceeEeccccccceeeccccccc---------------------------------------
Confidence 88 99999998876 5899999999887654432110000
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCcc
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 280 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
.......+..+..++....++.. +.+.|.+.|....+.... .......
T Consensus 123 -----------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------~~i~~g~ 172 (369)
T PF02239_consen 123 -----------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------TTIKVGR 172 (369)
T ss_dssp -----------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------EEEE--T
T ss_pred -----------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------eeecccc
Confidence 01123457778788888866655 568888888776543321 1111234
Q ss_pred ceEEEEEeCCCCcEEEE-EEcCCeEEEEECCCCcccCCceeeeccccC--------------------------------
Q 043890 281 VITSAEFHPTHCNMLAY-SSSKGSIRLIDLRQSALCDSHAILFEEQEA-------------------------------- 327 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------------------------- 327 (509)
......|+|++ ++++. ...++.|-++|..++++.. .++....
T Consensus 173 ~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~----~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 173 FPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVA----LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp TEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEE----EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred cccccccCccc-ceeeecccccceeEEEeeccceEEE----EeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 55678999998 65555 4557789999988876421 1100000
Q ss_pred --CCC---------ccccccccccEEEEEEecCCCEEEEe----cC-CeEEEEECCCCCCceEEEeeccccccccccccc
Q 043890 328 --PGS---------RSFFTEIIASISDIKFAKDGRHILSR----DY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE 391 (509)
Q Consensus 328 --~~~---------~~~~~~~~~~i~~~~~s~~~~~l~s~----~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
+.. ...+.....+ .-+..+|+++++.+. .+ +.|.++|.++ .+....+....+..
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~-------- 317 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR-------- 317 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------
T ss_pred CCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCc--------
Confidence 000 0001111223 567789999999987 35 8999999997 44444544322210
Q ss_pred CCCccceeeEEEcCCCCEEEEeeCC--CcEEEEeCCCCceeeeeec
Q 043890 392 NDSIFDKFECCLSGDGLRVATGSYS--NLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~ 435 (509)
+..+.|++||+++..+..+ +.|.+||..+.+++. ++.
T Consensus 318 ------~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~-~i~ 356 (369)
T PF02239_consen 318 ------VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK-RIP 356 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE-EEE
T ss_pred ------EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE-EEE
Confidence 2279999999987766544 369999999999888 665
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.8e-12 Score=123.11 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=106.5
Q ss_pred cccccCeEEEEECCCCCEEEEE-c---CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC
Q 043890 227 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 302 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg 302 (509)
..+...+....|+|||+.|+.. . +..|++||+.+++.. .+..+...+...+|+|+|..++++.+.++
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 4556678999999999988765 2 468999999876532 23334556778999999944445666665
Q ss_pred e--EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC----CeEEEEECCCCCCceEEE
Q 043890 303 S--IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY----MTLKLWDINMDSGPVATF 376 (509)
Q Consensus 303 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~ 376 (509)
. |.+||+.++.. +.+... ........|+|||+.|+..++ ..|+++|+.. .....+
T Consensus 269 ~~~Iy~~d~~~~~~-----~~Lt~~------------~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~l 329 (435)
T PRK05137 269 NTDIYTMDLRSGTT-----TRLTDS------------PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRI 329 (435)
T ss_pred CceEEEEECCCCce-----EEccCC------------CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEe
Confidence 5 77778887652 222221 134566899999998887643 3688888764 333444
Q ss_pred eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC---CcEEEEeCCCCc
Q 043890 377 QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---NLFRVFGCAPGS 428 (509)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~ 428 (509)
..+..... ...|+|||++|+..+.+ ..|.+|++..+.
T Consensus 330 t~~~~~~~---------------~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 330 SFGGGRYS---------------TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred ecCCCccc---------------CeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 33222211 67899999999877643 368888876544
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=9.2e-13 Score=125.70 Aligned_cols=209 Identities=15% Similarity=0.171 Sum_probs=130.2
Q ss_pred eecccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..+.+.+.+.+|+|||+.||..+.+ ..|.+||+.+++. ..+....
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~------------------------~~l~~~~-------- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR------------------------RVVANFK-------- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE------------------------EEeecCC--------
Confidence 3467889999999999999876643 4699999987764 1222222
Q ss_pred hhhhccceeeEEEEcCCCceEEE-eeCCCeEEEEecc--chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLL-STNDKTIKFWKVQ--EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s-~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
+.+....| +|||+.|+. .+.+|...+|.++ ++....
T Consensus 240 ----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------------------------- 278 (427)
T PRK02889 240 ----GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRR----------------------------------- 278 (427)
T ss_pred ----CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEE-----------------------------------
Confidence 34567889 999998874 5778887777654 222111
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEe
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~ 268 (509)
+..+........|+|||+.|+.. .+|...+|.+.......+.+
T Consensus 279 -----------------------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 279 -----------------------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred -----------------------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 12222334557899999988755 45666777654322111110
Q ss_pred eccCCccCCCccceEEEEEeCCCCcEEEEEEcCC---eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE
Q 043890 269 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
... ........|+|+| ++++..+.++ .|.+||+.+++. +.+... .......
T Consensus 324 -----t~~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~~-------------~~~~~p~ 377 (427)
T PRK02889 324 -----TFT--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTDT-------------TRDESPS 377 (427)
T ss_pred -----ecC--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccCC-------------CCccCce
Confidence 111 2233467899999 7887766554 699999988762 222211 1235679
Q ss_pred EecCCCEEEEec-C-C--eEEEEECCCCCCceEEEeeccc
Q 043890 346 FAKDGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 346 ~s~~~~~l~s~~-~-~--~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
|+|||++|+.+. + + .+.+.++. +.....+..+.+
T Consensus 378 ~spdg~~l~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~g 415 (427)
T PRK02889 378 FAPNGRYILYATQQGGRSVLAAVSSD--GRIKQRLSVQGG 415 (427)
T ss_pred ECCCCCEEEEEEecCCCEEEEEEECC--CCceEEeecCCC
Confidence 999999988864 2 3 45666664 455555554444
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.6e-12 Score=112.53 Aligned_cols=207 Identities=17% Similarity=0.213 Sum_probs=146.7
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC--CeEEEE
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 307 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d--g~i~vw 307 (509)
..|..++.. ...|++| ++|.+.+|..+.+...-. ++..+. ....+..+.-++..+.++++|+.. ..+++|
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeee-cCCceeeeccCCCCCceEecCchhcccceeee
Confidence 445555432 3467777 999999999985441100 001222 235566777777777888899999 889999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--CCEEEEecC-CeEEEEECCCCCCceEEEeecccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRP 384 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 384 (509)
|+.+.+ ++|...+.+.-.--+ .-.-.++++.|-+. ...|++++. +.+++||.+...+|+..+...+..+.
T Consensus 179 dle~~~------qiw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 179 DLEQSK------QIWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred ecccce------eeeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 999875 334333221110000 01136788899887 788888875 99999999998899999887766654
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeec
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRR 464 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 464 (509)
++...|+++++++|..-+.+..||++.+..+...+++-
T Consensus 252 ---------------~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--------------------------- 289 (412)
T KOG3881|consen 252 ---------------STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--------------------------- 289 (412)
T ss_pred ---------------eeeecCCCcEEEEecccchhheecccCceeeccccCCc---------------------------
Confidence 88899999999999999999999999888776223333
Q ss_pred CCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 465 GSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
++.|.++-.||..++||+++- ..++||++
T Consensus 290 ----------------tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 290 ----------------TGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ----------------cCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 466888888888888888776 67787763
No 237
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=135.90 Aligned_cols=218 Identities=17% Similarity=0.251 Sum_probs=160.2
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
|-..|+|..| ...|.++++|+.|..++||..+++.+...
T Consensus 189 H~naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs--------------------------------------- 227 (1113)
T KOG0644|consen 189 HRNAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS--------------------------------------- 227 (1113)
T ss_pred hhhheeeeee--ccccceEeecCccceeeeeeccchhhhcc---------------------------------------
Confidence 3488999999 99999999999999999999988765433
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
..||.+.++.++.+.+..+++++ .|..|++|.+..+..+ ..
T Consensus 228 ------------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv--------sv 269 (1113)
T KOG0644|consen 228 ------------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV--------SV 269 (1113)
T ss_pred ------------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH--------HH
Confidence 38899999999999988888888 8999999999987754 36
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+.+|.+.|++++|+|-. +.+.||++++||.+-.. ..+.... .. +. -..-+.++.|..++.-++
T Consensus 270 LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp-~~----~~-~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 270 LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRP-LK----FT-EKDLVDSILFENNGDRFL 332 (1113)
T ss_pred HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCC-CC----cc-cccceeeeeccccccccc
Confidence 78999999999999963 67889999999998221 1111110 00 00 013566777777888888
Q ss_pred EecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCC-CCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 355 SRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGD-GLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
++++ +.-..|.+.. .. .+..... -+.++.| ..+.+++-.+-.+++|++-+|.++.
T Consensus 333 Tgs~d~ea~n~e~~~-l~------~~~~~li---------------f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H- 389 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQ-LA------WRSNLLI---------------FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH- 389 (1113)
T ss_pred cccCCcccccchhhH-hh------hhccceE---------------EEeccccccccceeeeeeeEeeeeecccchhhh-
Confidence 8864 7777776553 11 1111000 1111112 2466777788899999999999998
Q ss_pred eeccCCCceeEEEEcCCCCC
Q 043890 433 TLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~ 452 (509)
.+.+|...+..+.+.|-+..
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred hhcccccceeeeeecCCCcH
Confidence 99999988888888876554
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=4.4e-13 Score=118.36 Aligned_cols=162 Identities=9% Similarity=0.100 Sum_probs=110.4
Q ss_pred cccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 229 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
..+.+..++-+|-+..+-+| .+|+|.+|.....+.+. .+..|.++|.+|++.++| ++++|++.|..++||
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIW 320 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcceEEECCCC-cEEeecccccceeEe
Confidence 34556777888888889999 99999999999877654 567899999999999999 999999999999999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCC--ceEEEeeccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSG--PVATFQVHEYLRPK 385 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 385 (509)
|+++... +.++..+ -+...+++|..|. ||.+....|.||.=..... .-..+-.|.
T Consensus 321 DlR~~~q----l~t~~tp-------------~~a~~ls~Sqkgl-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~----- 377 (545)
T KOG1272|consen 321 DLRNFYQ----LHTYRTP-------------HPASNLSLSQKGL-LALSYGDHVQIWKDALKGSGHGETPYMNHR----- 377 (545)
T ss_pred eeccccc----cceeecC-------------CCccccccccccc-eeeecCCeeeeehhhhcCCCCCCcchhhhc-----
Confidence 9998753 3333322 3567788886543 4444447899994322111 111111121
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
+...|.++.|.|-...|-.|...|.-.|.=...|++.
T Consensus 378 --------~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN 414 (545)
T KOG1272|consen 378 --------CGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPN 414 (545)
T ss_pred --------cCcccccceeccHHHeeeccccCCceeEeccCCCCCC
Confidence 1112347888887777776666665555444444443
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=1.8e-12 Score=108.59 Aligned_cols=147 Identities=16% Similarity=0.276 Sum_probs=98.1
Q ss_pred EEEEEeCCCCcEEEEEEc---------CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 283 TSAEFHPTHCNMLAYSSS---------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 283 ~~l~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
..+.|+|+|..+++.... -+...+|.++..... ...+... ..++|.+++|+|+|+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~-----------~~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELK-----------KEGPIHDVAWSPNGNEF 74 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeecc-----------CCCceEEEEECcCCCEE
Confidence 468899998444444431 134556665443211 2222211 12469999999999987
Q ss_pred EEe--c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC---CCcEEEEeCCCC
Q 043890 354 LSR--D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY---SNLFRVFGCAPG 427 (509)
Q Consensus 354 ~s~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~ 427 (509)
+.. . ...|.+||++ .+.+..+.. ..+. .+.|+|+|++|++++. .|.|.+||+++.
T Consensus 75 avi~g~~~~~v~lyd~~--~~~i~~~~~--~~~n---------------~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 75 AVIYGSMPAKVTLYDVK--GKKIFSFGT--QPRN---------------TISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred EEEEccCCcccEEEcCc--ccEeEeecC--CCce---------------EEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 664 2 3799999997 455555543 2222 7899999999999875 467999999987
Q ss_pred ceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe-------
Q 043890 428 STEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA------- 500 (509)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~------- 500 (509)
+.+. ..+ ...++.++|+|||++|++++
T Consensus 136 ~~i~-~~~---------------------------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~ 169 (194)
T PF08662_consen 136 KKIS-TFE---------------------------------------------HSDATDVEWSPDGRYLATATTSPRLRV 169 (194)
T ss_pred EEee-ccc---------------------------------------------cCcEEEEEEcCCCCEEEEEEeccceec
Confidence 7765 222 12367889999999999876
Q ss_pred cCceEEEe
Q 043890 501 ANSLYMYY 508 (509)
Q Consensus 501 ~~~i~v~~ 508 (509)
+++++||+
T Consensus 170 dng~~Iw~ 177 (194)
T PF08662_consen 170 DNGFKIWS 177 (194)
T ss_pred cccEEEEE
Confidence 36777775
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.2e-11 Score=102.75 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=84.9
Q ss_pred CCCEEEE-E-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe-EEEEECCCCcccCC
Q 043890 241 DGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDLRQSALCDS 317 (509)
Q Consensus 241 ~~~~l~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~ 317 (509)
+..+||. | .-|.|+|-|+...+.- .|..+.+|...|.+++.+-+| .++|+++..|+ |||||..++..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~--- 216 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL--- 216 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE---
Confidence 3445554 3 6799999999875541 123568899999999999999 99999999997 89999999986
Q ss_pred ceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCC
Q 043890 318 HAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINM 368 (509)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~ 368 (509)
+..+..... ...|.+++|||+..+|++++| |+++||.++.
T Consensus 217 -l~E~RRG~d----------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 217 -LQELRRGVD----------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -eeeeecCCc----------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 344432221 157999999999999999998 9999999885
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=9.7e-12 Score=119.59 Aligned_cols=201 Identities=13% Similarity=0.179 Sum_probs=125.4
Q ss_pred ccceeeEEEEcCCCceEEEeeCC---CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTND---KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..+....| +|||++|+.+..+ ..|.+||+.+++....
T Consensus 190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------------------------------- 229 (417)
T TIGR02800 190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV-------------------------------------- 229 (417)
T ss_pred CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 45778889 9999999887654 4799999887642211
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cC--CeEEEEEccCCCceeeEeec
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--g~i~iwd~~~~~~~~~~~~~ 270 (509)
..+...+.+++|+|+|+.|+.. .+ ..|++||+.++...
T Consensus 230 --------------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~------ 271 (417)
T TIGR02800 230 --------------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT------ 271 (417)
T ss_pred --------------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE------
Confidence 1222334567899999877653 33 46888898865421
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEc-CC--eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+..+........|+|++ +.|+..+. ++ .|.++|+.+++. ..+... ...+..+.|+
T Consensus 272 ---~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~~------------~~~~~~~~~s 330 (417)
T TIGR02800 272 ---RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEV-----RRLTFR------------GGYNASPSWS 330 (417)
T ss_pred ---ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEeecC------------CCCccCeEEC
Confidence 223344444567899998 66665544 33 577778776542 222211 1345678999
Q ss_pred cCCCEEEEecC-C---eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC---cEE
Q 043890 348 KDGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN---LFR 420 (509)
Q Consensus 348 ~~~~~l~s~~~-~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~ 420 (509)
|+|++++.+.. + .|.+||+.+ .....+..... .. ...|+|||++|+..+.++ .++
T Consensus 331 pdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~-~~---------------~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 331 PDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTDTGL-DE---------------SPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CCCCEEEEEEccCCceEEEEEeCCC--CCeEEccCCCC-CC---------------CceECCCCCEEEEEEeCCCcEEEE
Confidence 99999888642 3 788888875 23333332211 11 568999999988877654 455
Q ss_pred EEeCCCCceeeeeeccC
Q 043890 421 VFGCAPGSTEATTLEAS 437 (509)
Q Consensus 421 iw~~~~~~~~~~~~~~~ 437 (509)
+.+.. +.... .+..+
T Consensus 393 ~~~~~-g~~~~-~~~~~ 407 (417)
T TIGR02800 393 LVSTD-GRFRA-RLPLG 407 (417)
T ss_pred EEECC-Cceee-ECCCC
Confidence 55544 44443 44433
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.3e-11 Score=118.24 Aligned_cols=167 Identities=14% Similarity=0.219 Sum_probs=101.4
Q ss_pred EEEECCCCCEEEEE--cCCe--EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCC--eEEEE
Q 043890 235 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 307 (509)
Q Consensus 235 ~i~~~~~~~~l~~~--~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg--~i~vw 307 (509)
...|+|+|+.|+.. .+|. |+++|+++++.. .+..+........|+|++ +.|+..+ .++ .|.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 56899999988754 4554 777788765421 233344556778999998 6555544 344 46666
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CC--eEEEEECCCCCCceEEEeeccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YM--TLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~--~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
|+.+++. ..+.... ......+|+|||++|+..+ .+ .|.++|+.+ +. ...+.... ..
T Consensus 336 dl~~g~~-----~~Lt~~g------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d 395 (448)
T PRK04792 336 NLASGKV-----SRLTFEG------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-LD 395 (448)
T ss_pred ECCCCCE-----EEEecCC------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-CC
Confidence 7776652 2221110 1233468999999988753 24 455677765 22 33333211 10
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCC-C--cEEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-N--LFRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
. ...|+|||+.|+..+.+ + .+++++.+ |.... .+..+.+.+...+|+|
T Consensus 396 ~---------------~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~-~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 E---------------SPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA-RLPAGQGEVKSPAWSP 446 (448)
T ss_pred C---------------CceECCCCCEEEEEEecCCceEEEEEECC-CCceE-ECcCCCCCcCCCccCC
Confidence 0 45899999998876643 3 37777874 65555 6666656666667766
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.1e-10 Score=99.22 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=112.3
Q ss_pred EEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccc----------eEEEEEeCCCCcEEEEEEc-
Q 043890 234 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS- 300 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~l~~~~~~~~~l~~~~~- 300 (509)
..++++++|++++++ ..|.|.++-++....+...+ ....|.+. +....+.|++ ++|++.+-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-----~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVV-----QVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccce-----eeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence 678999999999998 68999999997654333221 12223322 7788999998 77777764
Q ss_pred CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEee
Q 043890 301 KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 301 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~ 378 (509)
-..|.+|++..+++.......++. ....+-+.|+|++++..... +++|.+|........+..++.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CceEEEEEcccCccccccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 457999999988754322222211 25678899999999988865 499999999864455555544
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCC
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCA 425 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 425 (509)
+.... .++..+.... .+..++||++|.++.. ...|-+|.+.
T Consensus 233 i~tlP---~dF~g~~~~a---aIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 233 IDTLP---EDFTGTNWAA---AIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eccCc---cccCCCCcee---EEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 33221 1111111111 7889999999987653 3478888776
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=6.1e-13 Score=118.20 Aligned_cols=214 Identities=13% Similarity=0.136 Sum_probs=149.9
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|+.|.| +..|..|++++.|..|.+||+..++.+..
T Consensus 143 GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------------------------- 179 (559)
T KOG1334|consen 143 GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------------------------- 179 (559)
T ss_pred Cccceeee--cccCceeeccCccceEEeehhhccCcccc-----------------------------------------
Confidence 88999999 99999999999999999999987764322
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
|..+|...|....|-|. .+.++++ .||.|++=.+...+.... ...
T Consensus 180 ---------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~-----t~r 227 (559)
T KOG1334|consen 180 ---------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN-----TKR 227 (559)
T ss_pred ---------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec-----cee
Confidence 12566666666677664 3557776 899999887765544332 246
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 353 (509)
+..|.++|..++.-|+.++-|.+++.|+.+.-+|+++.... ..+......... .-....++..|-.. .+
T Consensus 228 l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa----~~~~cr~~~~~~------~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 228 LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA----EKFVCREADEKE------RVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccccCccceeeecCCCCCcccccccccceeeeeeccCCcc----ceeeeeccCCcc------ceeeeeEecCCCCcccc
Confidence 77899999999999999999999999999999999987632 112111110000 02577888888666 55
Q ss_pred EEe-cCCeEEEEECCCCCC-----ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 354 LSR-DYMTLKLWDINMDSG-----PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 354 ~s~-~~~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+++ .+..+++||.+.-.+ .+..+..|.-. ++....|+++.|+.++.-|+++-.|-.|+++.-.
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~---------~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV---------EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCcccc---------ccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 665 468999999875221 12233222110 1223335699999888777778888899999543
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=2e-10 Score=106.50 Aligned_cols=278 Identities=12% Similarity=0.146 Sum_probs=161.9
Q ss_pred ccceEEEEECCCCCeEEeecC----CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 40 VDIISAIEFDKTGDHLATGDR----GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~----dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
....+-++++|++++|.+... +|.|..|++..... .+ ..+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L----------------~~~~~~~~~g---------- 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TL----------------TLLNSVPSGG---------- 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EE----------------EEEEEEEESS----------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---ee----------------EEeeeeccCC----------
Confidence 345567899999999998866 57999999886522 00 0011111010
Q ss_pred hhccceeeEEEEcCCCceEEEeeC-CCeEEEEeccc-hhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 116 IEEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQE-KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
.....+++ ++++++|+++.. +|.|.++++.. +.........
T Consensus 87 --~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~--------------------------------- 129 (345)
T PF10282_consen 87 --SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV--------------------------------- 129 (345)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE---------------------------------
T ss_pred --CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeec---------------------------------
Confidence 22456777 999999999875 89999999986 3322110000
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCc-eeeEeec
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ-SFNIVDV 270 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~-~~~~~~~ 270 (509)
....... ...........++.++|+++++++. ....|.+|+++.... +.....+
T Consensus 130 ---------------~~~g~g~--------~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 130 ---------------RHEGSGP--------NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp ---------------ESEEEES--------STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred ---------------ccCCCCC--------cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 0000000 0001122446789999999998886 577899999987552 2111100
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
. .......+.++|+|++...+++...++.|.++++.......+.+........ ...+ ......++++|||
T Consensus 187 ---~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~-----~~~~-~~~~~~i~ispdg 256 (345)
T PF10282_consen 187 ---K-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE-----GFTG-ENAPAEIAISPDG 256 (345)
T ss_dssp ---E-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET-----TSCS-SSSEEEEEE-TTS
T ss_pred ---c-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc-----cccc-cCCceeEEEecCC
Confidence 1 1235567899999998444455556889999999832211111122211100 0000 1257889999999
Q ss_pred CEEEEec--CCeEEEEECCCCCCceEEEee---cccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeC
Q 043890 351 RHILSRD--YMTLKLWDINMDSGPVATFQV---HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGC 424 (509)
Q Consensus 351 ~~l~s~~--~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 424 (509)
++|+++. .+.|.+|++......+..+.. ..... ..+.++|+|++|+++. .++.|.+|++
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P---------------r~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP---------------RHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---------------EEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---------------cEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 9998874 489999999533333333322 11111 1899999999999887 4679999977
Q ss_pred C--CCceee
Q 043890 425 A--PGSTEA 431 (509)
Q Consensus 425 ~--~~~~~~ 431 (509)
+ +|.+..
T Consensus 322 d~~tG~l~~ 330 (345)
T PF10282_consen 322 DPDTGKLTP 330 (345)
T ss_dssp ETTTTEEEE
T ss_pred eCCCCcEEE
Confidence 4 665443
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=3.9e-10 Score=104.56 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=106.0
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeec------cCCccCCCccceEEEEEeCCCCcEEEEEE-cCC
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG 302 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg 302 (509)
....++++|++++|+++ .+|.|.++++.....+...... .+...........++.++|++ +++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCC
Confidence 35578999999999988 6999999999875433332110 011112234557889999998 6666654 456
Q ss_pred eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeecc
Q 043890 303 SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 303 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
.|.+|++............+.... ....+.+.|+|++++++... .+.|.+|++......+.....-.
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~-----------G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPP-----------GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECST-----------TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEEEeCCCceEEEeecccccc-----------CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 899999987652111112221111 24678999999999988764 39999999983233332222111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCC
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCA 425 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~ 425 (509)
.... .... . .....+.++|||++|+++. ..+.|.+|+++
T Consensus 236 ~~~~---~~~~-~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 236 TLPE---GFTG-E--NAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SCET---TSCS-S--SSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred eccc---cccc-c--CCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 0000 0000 0 0112789999999988766 46789999994
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.3e-11 Score=117.11 Aligned_cols=168 Identities=13% Similarity=0.160 Sum_probs=102.8
Q ss_pred EEEEECCCCCEEEEE--cCC--eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCC--eEEE
Q 043890 234 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRL 306 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg--~i~v 306 (509)
....|+|+|+.|+.. .+| .|++||++++... .+..+........|+|++ +.++..+ .++ .|.+
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEE
Confidence 357899999988754 444 6888898875421 233344455678999998 6555544 343 5777
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--C--CeEEEEECCCCCCceEEEeecccc
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
+|+.+++. ..+.... .......|+|||+.|+... + ..|.+||+.+ +. ...+... ..
T Consensus 316 ~d~~~g~~-----~~lt~~~------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~ 375 (430)
T PRK00178 316 VNVNGGRA-----ERVTFVG------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SL 375 (430)
T ss_pred EECCCCCE-----EEeecCC------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CC
Confidence 78776652 2221110 1234568999999988753 2 3588889886 33 3333221 11
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeeCC---CcEEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---NLFRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
.. ...|+|||+.|+..+.+ ..|++++++ |.... .+..+.+.+...+|+|
T Consensus 376 ~~---------------~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~-~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 DE---------------SPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRL-PLPTAQGEVREPSWSP 427 (430)
T ss_pred CC---------------CceECCCCCEEEEEEecCCceEEEEEECC-CCceE-ECcCCCCCcCCCccCC
Confidence 11 56899999999877654 357777775 44443 5555555566666665
No 248
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=1.2e-11 Score=110.78 Aligned_cols=293 Identities=14% Similarity=0.159 Sum_probs=169.9
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
.-++..++|||.|++|++....| |.+|....... +..+.. ..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-----------------------l~~~~~--------------~~ 73 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-----------------------LVRFRH--------------PD 73 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhh-----------------------eeeeec--------------CC
Confidence 45788999999999999988765 99998776554 222221 23
Q ss_pred ceeeEEEEcCCCceEEEeeCC---------------CeEEEEeccchhhhhhhccCCCC------CcccCCCCcccCCCC
Q 043890 120 INKIRWCQTANGALFLLSTND---------------KTIKFWKVQEKKVKKIADMNVDP------SKAVGNGNVASSSNN 178 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 178 (509)
|..+.| +|.++||.+-+.. ..+.+||+.++..+..+.....+ .+++-+....+-. .
T Consensus 74 V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 74 VKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred ceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 666777 7777777765432 25899999988766554433222 1111111111000 0
Q ss_pred ccCCcccc-CCCCC-----------cceecCCCCCCC---------------ccccccccccccceeeeeeeeeeccccc
Q 043890 179 VSPKPYLA-NGGSP-----------SKEFSFPPGGIP---------------SLRLPTVTSNETSLVARCRRVYAHAHDY 231 (509)
Q Consensus 179 ~~~~~~~~-~g~~~-----------~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (509)
...+.+.. .++.. ..++.+++++.+ .+++|.+....... .+.++. .
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~----tk~lfk---~ 223 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV----TKNLFK---V 223 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee----eeeeEe---e
Confidence 00010000 00000 223344444222 23333322111100 011111 1
Q ss_pred CeEEEEECCCCCEEEEE------------cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEE-
Q 043890 232 HINSISNNSDGETFISA------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS- 298 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~- 298 (509)
.-..+.|.+.|++|.+- .+..+++++++..... ......++|..++|.|.+ +.|++.
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~---------V~~~~~~pVhdf~W~p~S-~~F~vi~ 293 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP---------VEKDLKDPVHDFTWEPLS-SRFAVIS 293 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc---------eeccccccceeeeecccC-CceeEEe
Confidence 12357788888887642 1356778888743321 112457899999999998 555544
Q ss_pred -EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--C--CeEEEEECCCCCCce
Q 043890 299 -SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--Y--MTLKLWDINMDSGPV 373 (509)
Q Consensus 299 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~ 373 (509)
-.+..+.++|++..- ...+.. ..=+.+.|+|.+++++.++ . |.+-+||........
T Consensus 294 g~~pa~~s~~~lr~Nl-----~~~~Pe--------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 294 GYMPASVSVFDLRGNL-----RFYFPE--------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred cccccceeecccccce-----EEecCC--------------cccccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence 468899999999873 222222 2345678999999998863 2 899999998633333
Q ss_pred EEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee------CCCcEEEEeCCC
Q 043890 374 ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS------YSNLFRVFGCAP 426 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iw~~~~ 426 (509)
..+.+.... -+.|+||++++.+.. .|..|.|||+..
T Consensus 355 ~~~~~~n~s-----------------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 355 GAFNGLNTS-----------------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeecCCce-----------------EeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 345443321 578999999988764 378999999973
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=6.5e-11 Score=113.87 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=103.6
Q ss_pred cccCeEEEEECCCCCEEEEE-c---CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEE-EEEcCC-
Q 043890 229 HDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG- 302 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~-~~~~dg- 302 (509)
+...+....|+|+|+.|+.. . ...|++||+.+++.. .+..+...+.+++|+|++ +.|+ +.+.++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---------~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~ 257 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---------KVASFPGMNGAPAFSPDG-SKLAVSLSKDGN 257 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCC-CEEEEEECCCCC
Confidence 44457788899999998876 3 257999999876432 122344556678999998 5554 555444
Q ss_pred -eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC----CeEEEEECCCCCCceEEEe
Q 043890 303 -SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY----MTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 303 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~ 377 (509)
.|.+||+.++.. ..+... ........|+|||+.|+..++ ..|+++|+.+ .+ ...+.
T Consensus 258 ~~i~~~d~~~~~~-----~~l~~~------------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-----TRLTNG------------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-----EECCCC------------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEee
Confidence 588889887652 222211 123345689999998876532 3677888774 33 33333
Q ss_pred ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC---cEEEEeCCCCce
Q 043890 378 VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN---LFRVFGCAPGST 429 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~ 429 (509)
.+..... ...|+|+|++|+.++.++ .|.+||+.++..
T Consensus 319 ~~~~~~~---------------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 319 FRGGYNA---------------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred cCCCCcc---------------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 2322211 678999999999888776 788999887544
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.9e-11 Score=113.34 Aligned_cols=204 Identities=13% Similarity=0.158 Sum_probs=124.6
Q ss_pred eecccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..+.+.+....|+|||+.||..+.+ ..|.+|++.+++. ..+....
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------------------~~l~~~~-------- 242 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------------------EQITNFE-------- 242 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------------------EEccCCC--------
Confidence 3567789999999999998876533 4689999987754 1121111
Q ss_pred hhhhccceeeEEEEcCCCceEEE-eeCCC--eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLL-STNDK--TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
+.+....| +|||+.|+. ...+| .|.+||+.+++....
T Consensus 243 ----g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---------------------------------- 282 (430)
T PRK00178 243 ----GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV---------------------------------- 282 (430)
T ss_pred ----CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc----------------------------------
Confidence 33556888 999998874 44454 577778876643221
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCC--eEEEEEccCCCceee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFN 266 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~ 266 (509)
..+........|+|+|+.++.. .+| .|+++++.+++. ..
T Consensus 283 ------------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~ 325 (430)
T PRK00178 283 ------------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ER 325 (430)
T ss_pred ------------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 1122223456899999887655 333 577777766542 11
Q ss_pred EeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CC--eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 267 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
+ ... ........|+|++ +.++..+. ++ .|.+||+.+++. +.+... .....
T Consensus 326 l------t~~--~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~~-------------~~~~~ 378 (430)
T PRK00178 326 V------TFV--GNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTDT-------------SLDES 378 (430)
T ss_pred e------ecC--CCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccCC-------------CCCCC
Confidence 1 111 1223457899998 67766654 33 588899887752 333211 01124
Q ss_pred EEEecCCCEEEEec-C---CeEEEEECCCCCCceEEEee
Q 043890 344 IKFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 344 ~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~ 378 (509)
..|+|||++++..+ + ..+.++++. +.....+..
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~ 415 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPT 415 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECC--CCceEECcC
Confidence 58999999988753 2 456677775 344444443
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=7.3e-12 Score=106.63 Aligned_cols=235 Identities=14% Similarity=0.145 Sum_probs=136.3
Q ss_pred cCeEEEEECCCCC---EEEEEcCCeEEEEEccCCCcee-----------------eEeecc---------CC--ccCCCc
Q 043890 231 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSF-----------------NIVDVK---------PA--NMEDLT 279 (509)
Q Consensus 231 ~~v~~i~~~~~~~---~l~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~---------~~--~~~~~~ 279 (509)
..|..+.|.++++ +|+++.|.+|++|.++...... ++..+. |. --.+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4578888987754 3444489999999886432111 010000 11 124588
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EEEEe-c
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HILSR-D 357 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~-~ 357 (509)
..|.++.++.|. ..++++ .|=.|.+|++.-...+. ...+... ..+.+-..-|++..|+|... +++.. +
T Consensus 165 yhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 899999999997 666655 57789999988654321 1111110 11233345789999999544 33334 4
Q ss_pred CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC-CCceeeeeecc
Q 043890 358 YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA-PGSTEATTLEA 436 (509)
Q Consensus 358 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~ 436 (509)
.|+|++-|++...-+...-+.-..+......-+..+.+..|.++.|+++|+|+++-+. -+|++||++ ..+++. +++.
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~-t~~v 312 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE-TYPV 312 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce-EEee
Confidence 5999999999522211111111111111112233344555669999999999986443 589999995 445554 6666
Q ss_pred CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccc---eEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 437 SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTK---LLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 437 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
|..--..+ -++.. ... =..++|+-++..+++|+. +..++|+
T Consensus 313 h~~lr~kL--------------------------c~lYE-----nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 313 HEYLRSKL--------------------------CSLYE-----NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hHhHHHHH--------------------------HHHhh-----ccchhheeEEEEcCCcceEecccccceEEEec
Confidence 64110000 00000 111 146889999999999998 6666664
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.8e-10 Score=104.51 Aligned_cols=301 Identities=15% Similarity=0.202 Sum_probs=165.5
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
+-+.|||-|+||+|-...| |.+|--.+-.. ++.+.| ..|.-+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r------------------------------------~~RF~H-p~Vq~i 255 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR------------------------------------IQRFYH-PGVQFI 255 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHH------------------------------------HHhccC-CCceee
Confidence 5689999999999998877 88996554433 122222 347888
Q ss_pred EEEEcCCCceEEEeeC-----------CCeEEEEeccchhhhhhhccCCCC------CcccCCCCcccCCCCccCCcc--
Q 043890 124 RWCQTANGALFLLSTN-----------DKTIKFWKVQEKKVKKIADMNVDP------SKAVGNGNVASSSNNVSPKPY-- 184 (509)
Q Consensus 124 ~~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-- 184 (509)
.| ||..+||+|-+. -..+.|||+.+|..+..+.....+ .+++.+++.++.....+...+
T Consensus 256 df--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEt 333 (698)
T KOG2314|consen 256 DF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYET 333 (698)
T ss_pred ec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEec
Confidence 88 999999998653 157999999999877765542221 122333332221111100000
Q ss_pred ----ccCCCCC----cceecCCCCCCCccccccccccccce----e----eeeeeeeecccccCeEEEEECCCCCEEEEE
Q 043890 185 ----LANGGSP----SKEFSFPPGGIPSLRLPTVTSNETSL----V----ARCRRVYAHAHDYHINSISNNSDGETFISA 248 (509)
Q Consensus 185 ----~~~g~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 248 (509)
..+++.+ ..++..++. ...+..|.-......- + .+.+++. .-+.-.=..+.|-.+|.+|+.-
T Consensus 334 psf~lld~Kslki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 334 PSFMLLDKKSLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CceeeecccccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEE
Confidence 0111111 111111111 1122233221111100 0 0111111 1111112245677788888753
Q ss_pred -c----------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc--CCeEEEEECCCCccc
Q 043890 249 -D----------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDLRQSALC 315 (509)
Q Consensus 249 -~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~ 315 (509)
+ -..+.|+.++...-.... ......|...+|.|.|.++.+..+. ..++.+|.+++....
T Consensus 412 vdR~tK~~~~g~f~n~eIfrireKdIpve~--------velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~ 483 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFRIREKDIPVEV--------VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK 483 (698)
T ss_pred EEeeccccccceEeeEEEEEeeccCCCcee--------eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence 1 123567777755433322 2346788999999999444443433 357889988854323
Q ss_pred CCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe---c-CCeEEEEECCCCCCceEE-Eeecccccccccccc
Q 043890 316 DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR---D-YMTLKLWDINMDSGPVAT-FQVHEYLRPKLCDLY 390 (509)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~-~~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 390 (509)
.+.++.++. ...+.+.|+|.|++++.+ + .|.+.++|+.. .....+ ...|...
T Consensus 484 ~~lVk~~dk--------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a-------- 540 (698)
T KOG2314|consen 484 PSLVKELDK--------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAA-------- 540 (698)
T ss_pred hhhhhhhcc--------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCcccccc--------
Confidence 333444443 257889999999999885 3 38999999884 121111 1112211
Q ss_pred cCCCccceeeEEEcCCCCEEEEeeC------CCcEEEEeCC
Q 043890 391 ENDSIFDKFECCLSGDGLRVATGSY------SNLFRVFGCA 425 (509)
Q Consensus 391 ~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~ 425 (509)
+.+.|.|.|+|+++++. |.--+||+..
T Consensus 541 --------t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 541 --------TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred --------ccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 17899999999999876 3445555554
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.5e-10 Score=105.17 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=105.1
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEE--EEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
..+++++++.....+. ....++|.++.|+|++ +.|++ |-.-..+.|||++..- +..+..
T Consensus 251 q~Lyll~t~g~s~~V~---------L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-----v~df~e---- 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVP---------LLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-----VFDFPE---- 311 (566)
T ss_pred ceEEEEEecCceEEEe---------cCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-----eEeCCC----
Confidence 5677777773333221 1247899999999998 54443 4457889999999764 333332
Q ss_pred CCccccccccccEEEEEEecCCCEEEEec--C--CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEc
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS 404 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 404 (509)
++=+++-|+|.|++++.++ + |.+.|||+.+ .+++..+...... -+.|+
T Consensus 312 ----------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~ 363 (566)
T KOG2315|consen 312 ----------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWS 363 (566)
T ss_pred ----------CCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEc
Confidence 4668899999999988864 3 9999999997 7777777665432 57999
Q ss_pred CCCCEEEEeeC------CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCC
Q 043890 405 GDGLRVATGSY------SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 405 ~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
|||++++|++. |+.++||+.. |..+....- .. ....+.|-|-.
T Consensus 364 PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f-~s-EL~qv~W~P~~ 412 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF-KS-ELLQVEWRPFN 412 (566)
T ss_pred CCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh-hH-hHhheeeeecC
Confidence 99999999875 7899999987 666551111 11 34555555533
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.3e-10 Score=111.23 Aligned_cols=205 Identities=16% Similarity=0.161 Sum_probs=121.4
Q ss_pred ecccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+...+.+..|+|||+.||..+.+ ..|++||+.+++. ..+....
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~------------------------~~lt~~~--------- 261 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR------------------------EKVTSFP--------- 261 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe------------------------EEecCCC---------
Confidence 456788899999999988876532 3588888877654 1111111
Q ss_pred hhhccceeeEEEEcCCCceEEE-eeCCCe--EEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 115 EIEEKINKIRWCQTANGALFLL-STNDKT--IKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
+......| +|||+.|+. .+.+|. |.++|+.+++....
T Consensus 262 ---g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l----------------------------------- 301 (448)
T PRK04792 262 ---GINGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI----------------------------------- 301 (448)
T ss_pred ---CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-----------------------------------
Confidence 22456788 999998875 455665 66667765542211
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCC--eEEEEEccCCCceeeE
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNI 267 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~~ 267 (509)
..+.......+|+|+|+.++.. .++ .|+++|+.+++. ..+
T Consensus 302 -----------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~L 345 (448)
T PRK04792 302 -----------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRL 345 (448)
T ss_pred -----------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEE
Confidence 1122234567899999987765 344 466667665442 111
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CC--eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
... .......+|+|+| +.|+..+. ++ .|.++|+.+++. ..+.... .....
T Consensus 346 ------t~~--g~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~~~-------------~d~~p 398 (448)
T PRK04792 346 ------TFE--GEQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTSTR-------------LDESP 398 (448)
T ss_pred ------ecC--CCCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccCCC-------------CCCCc
Confidence 111 2223457899999 66665544 44 455678777652 2222110 11234
Q ss_pred EEecCCCEEEEec--C--CeEEEEECCCCCCceEEEeecc
Q 043890 345 KFAKDGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 345 ~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
.|+|||+.|+... + ..+++++.. +.....+..+.
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~ 436 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQ 436 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECC--CCceEECcCCC
Confidence 7999999888753 2 347777775 45555555443
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.2e-09 Score=102.10 Aligned_cols=174 Identities=11% Similarity=0.085 Sum_probs=100.6
Q ss_pred EEEEECCCCCEEEEE-c-CC----eEEEEEccCCC--ceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeE
Q 043890 234 NSISNNSDGETFISA-D-DL----RINLWNLEISN--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSI 304 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~-~-dg----~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i 304 (509)
....|+|||+.|+.. + +| .+..|++..+. ....+ ...........+|+||| +.|+..+ .+|..
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~~ 305 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGRP 305 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCCc
Confidence 356899999888865 2 33 33446665421 11111 11122334578999999 6666554 56655
Q ss_pred EEEE--CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C---CeEEEEECCCCCCceEEEee
Q 043890 305 RLID--LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 305 ~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~ 378 (509)
.+|. +..... ..+.+.. +...+....|+|||+.|+... . ..|.+||+.+ ++. ..+..
T Consensus 306 ~ly~~~~~~~g~---~~~~lt~------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~ 368 (428)
T PRK01029 306 RIYIMQIDPEGQ---SPRLLTK------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTT 368 (428)
T ss_pred eEEEEECccccc---ceEEecc------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccC
Confidence 5554 332110 0121211 113567789999999888753 1 5799999986 333 33332
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeC---CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCC
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY---SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPS 449 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~ 449 (509)
...... ...|+|||+.|+..+. ...|+++++..++... +....+.+...+|+|-
T Consensus 369 ~~~~~~---------------~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~--Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 369 SPENKE---------------SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK--IVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCCcc---------------ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--eecCCCcccCceecCC
Confidence 211111 6899999998875543 3578899998776543 3334445566777764
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=6.2e-09 Score=92.97 Aligned_cols=145 Identities=15% Similarity=0.209 Sum_probs=107.5
Q ss_pred cccccCeEEEEECCCCCEEEEE-cCC-eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 227 HAHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
.+|...|+-..+..+++-++.| .|| .+-++|.++++.. .+...-+.|.++..+++| +.++.+-....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 4556668777887777788888 777 8999999986632 345566789999999999 899999889999
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe---cC--CeEEEEECCCCCCceEEEeec
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR---DY--MTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~--~~i~iwd~~~~~~~~~~~~~~ 379 (509)
.++|+.++. ++..+..+ .+-|+.+.|+|+++++|.+ +. ..|++||+.. ++.. ..+..
T Consensus 426 ~vididngn-----v~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy-~vTT~ 487 (668)
T COG4946 426 WVIDIDNGN-----VRLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIY-DVTTP 487 (668)
T ss_pred EEEEecCCC-----eeEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEE-EecCC
Confidence 999999997 35554332 1579999999999999986 22 7899999985 3333 22222
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
...- ++-+|.||+++|..-+
T Consensus 488 ta~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 TAYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccc---------------cCcccCCCCcEEEEEe
Confidence 2111 1568889999877554
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=1.1e-10 Score=99.65 Aligned_cols=206 Identities=11% Similarity=0.217 Sum_probs=137.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
-..+++++.++++...|++|-.+|++.=+.+...-. ...+.+.+..|. .
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~ 115 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------A 115 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------c
Confidence 357889999999999999999999999888764322 011134556666 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|..+-| +...+.+++.+.|..+.---.+.+....-...... .+...+ ...+.|.
T Consensus 116 ~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~-------d~~~~fv 170 (404)
T KOG1409|consen 116 RVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQF-------DALYAFV 170 (404)
T ss_pred ceeeEEe--cCCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCce-------eeEEEEe
Confidence 8999999 77777999999997766443443332111000000 000000 0012222
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+...+.+..-.+...... +... +.+|.+.+.+++|.+....|.+| .|..+.+||+-..+... ..+.+
T Consensus 171 Gd~~gqvt~lr~~~~~~~----~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-------~el~g 238 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQ----LITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-------YELQG 238 (404)
T ss_pred cccccceEEEEEeecCCc----eEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-------eeecc
Confidence 333333332222221111 1122 48999999999999999999999 99999999998654332 26778
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCc
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 313 (509)
|...|..+...+-- +.+++++.||.|.+||++...
T Consensus 239 h~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 239 HNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred chhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 99999999888876 899999999999999998764
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=5.7e-10 Score=93.31 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=109.3
Q ss_pred cccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 227 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
+.|+.+.+...|+.. .+++.+| +|+.+..||++..+...- .....|...|.++.-+|..+.++++|+.|..|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee------ecceeeecceEEEecCCCCCceEEEeccccce
Confidence 778888888888654 4678888 999999999995442211 24566899999999998777999999999999
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--CCEEEEecCCeEEEEECCCCCCc----eEEEee
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--GRHILSRDYMTLKLWDINMDSGP----VATFQV 378 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~~~i~iwd~~~~~~~----~~~~~~ 378 (509)
++||.|+... ++ ++.. -.++|..+.++|. +++|+++-.+-.+|-+....... +...+.
T Consensus 236 ~~~DtRnm~k---Pl--~~~~-----------v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~ 299 (339)
T KOG0280|consen 236 RVLDTRNMGK---PL--FKAK-----------VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI 299 (339)
T ss_pred eeeehhcccC---cc--ccCc-----------cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc
Confidence 9999996541 11 1111 1278999999994 44566665566777777653222 222333
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEE-EEeCCCCc
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFR-VFGCAPGS 428 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iw~~~~~~ 428 (509)
|.+... ...|.....+|||++ .|+.++ +|-.-+++
T Consensus 300 hdSl~Y---------------G~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 300 HDSLCY---------------GGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ccceee---------------ccccccccceeeeeeccccceeeeeeeccCC
Confidence 432211 334433345688875 466644 67554443
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=4.6e-11 Score=122.18 Aligned_cols=198 Identities=18% Similarity=0.340 Sum_probs=146.8
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
.|-..|.++.=+|...+.+||+.||.+++|....++. +..++.-. .
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-----------------------v~~~rt~g----------~- 2251 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-----------------------VVCFRTAG----------N- 2251 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------------------EEEeeccC----------c-
Confidence 3568889999999999999999999999999988776 33332111 1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|+.+.| +.+|+.+..+..||.+.+|.+...- ...
T Consensus 2252 s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~---~~s--------------------------------------- 2287 (2439)
T KOG1064|consen 2252 SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKP---YTS--------------------------------------- 2287 (2439)
T ss_pred chhhhhhh--cccCCceeeeccCCceeecccCCcc---eec---------------------------------------
Confidence 56999999 8899999999999999999987211 000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE----cCCeEEEEEccCCCceeeEeeccCC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
...|.....+..|-. ..++++ +++.+.+||..-..... +
T Consensus 2288 ----------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s-~------ 2330 (2439)
T KOG1064|consen 2288 ----------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS-L------ 2330 (2439)
T ss_pred ----------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc-e------
Confidence 145666666666654 445553 48899999976433211 1
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.-..|...++++++.|.. ++|++|+.+|.|++||++..++ .++++. +. ...++
T Consensus 2331 v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql----~h~~~~---------------------~~-~~~~f 2383 (2439)
T KOG1064|consen 2331 VHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQL----RHTFQA---------------------LD-TREYF 2383 (2439)
T ss_pred eeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHH----HHHhhh---------------------hh-hhhee
Confidence 126799999999999998 9999999999999999998875 233321 33 45688
Q ss_pred EEecC-CeEEEEECCCCCCceEEEee
Q 043890 354 LSRDY-MTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 354 ~s~~~-~~i~iwd~~~~~~~~~~~~~ 378 (509)
++|+. |.++||++.. ...+.++..
T Consensus 2384 ~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred eccCcccceEEEEccc-cchhhcCch
Confidence 88864 9999999997 466666554
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=5.7e-10 Score=108.82 Aligned_cols=163 Identities=17% Similarity=0.091 Sum_probs=114.2
Q ss_pred EEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcc
Q 043890 236 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 236 i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
..+..+...++.. .++.+.+||........++.. .....-....-+.++++. -++++|+.-+.|.+|+......
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~----~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS----DERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCC----CceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCC
Confidence 3344455666766 888999999886554332210 000001122233455664 7899999999999999873221
Q ss_pred cCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCC
Q 043890 315 CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEND 393 (509)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
+. .+.+|.+.|.++.|+-||+++++.+| .++++|++.+........-+|+..+.
T Consensus 168 ---p~-------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw--------- 222 (967)
T KOG0974|consen 168 ---PI-------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW--------- 222 (967)
T ss_pred ---cc-------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE---------
Confidence 11 35677899999999999999999875 99999999984444435566766544
Q ss_pred CccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 394 SIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 394 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
+++|.|+ .++++++|.+.++|+.+ ++.+. ++.+|.
T Consensus 223 ------~~~~~~n--~i~t~gedctcrvW~~~-~~~l~-~y~~h~ 257 (967)
T KOG0974|consen 223 ------ACCFLPN--RIITVGEDCTCRVWGVN-GTQLE-VYDEHS 257 (967)
T ss_pred ------EEEeccc--eeEEeccceEEEEEecc-cceeh-hhhhhh
Confidence 8999988 89999999999999776 56665 777775
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4.3e-10 Score=103.06 Aligned_cols=146 Identities=13% Similarity=0.138 Sum_probs=117.0
Q ss_pred CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCce
Q 043890 241 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA 319 (509)
Q Consensus 241 ~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 319 (509)
+...++-| ..|.|.+|++..++-...+ .-..|.+.|.++.++.+- ..|.+++.|..+..|+...... +
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----I 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee----e
Confidence 34456677 8999999999987755443 446799999999999987 8999999999999999998874 4
Q ss_pred eeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCcccee
Q 043890 320 ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (509)
+.+.... ..+.+++.+|||+.+++++ ++|++||+.+ .+.+..|.+|.+.+.
T Consensus 138 ~~~~~~~------------~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v~--------------- 188 (541)
T KOG4547|consen 138 RIWKEQK------------PLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPVR--------------- 188 (541)
T ss_pred eeeccCC------------CccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcceE---------------
Confidence 5555543 5789999999999999987 8999999997 899999999998876
Q ss_pred eEEEcCC-----CCEEEE-eeCCCcEEEEeCCC
Q 043890 400 ECCLSGD-----GLRVAT-GSYSNLFRVFGCAP 426 (509)
Q Consensus 400 ~~~~s~~-----~~~l~~-~~~dg~i~iw~~~~ 426 (509)
++.|-.+ |.++++ ...+..+.+|-+..
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6677655 566554 45567788887653
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.5e-09 Score=101.67 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=70.7
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEc--cCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC---CeEE
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNL--EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIR 305 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d---g~i~ 305 (509)
....+|+|||+.|+.. .+|...+|.+ ....... ..+..+...+....|+||| +.|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~-------~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP-------RLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccce-------EEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence 3457899999987765 4665555544 3211111 1233334566788999999 777665543 4699
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c---CCeEEEEECCC
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D---YMTLKLWDINM 368 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~---~~~i~iwd~~~ 368 (509)
+||+.+++. +.+.... ..+....|+|||+.|+.. . ...|+++|+..
T Consensus 355 v~dl~~g~~-----~~Lt~~~------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 355 VYDLATGRD-----YQLTTSP------------ENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEECCCCCe-----EEccCCC------------CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 999988763 2222111 245678999999988753 2 26788889875
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4.1e-10 Score=109.80 Aligned_cols=151 Identities=14% Similarity=0.250 Sum_probs=122.0
Q ss_pred EEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEE
Q 043890 46 IEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 125 (509)
Q Consensus 46 v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~ 125 (509)
+.++++.-++++|+.-+.|.+|+...... ...+.+|+ +.|..+.|
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~-----------------------p~~l~GHe------------G~iF~i~~ 183 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNK-----------------------PIRLKGHE------------GSIFSIVT 183 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCC-----------------------cceecccC------------CceEEEEE
Confidence 44566778899999999999999984443 12577888 89999999
Q ss_pred EEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcc
Q 043890 126 CQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSL 205 (509)
Q Consensus 126 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 205 (509)
+.||.++++.|.|.++++|++++.+....
T Consensus 184 --s~dg~~i~s~SdDRsiRlW~i~s~~~~~~------------------------------------------------- 212 (967)
T KOG0974|consen 184 --SLDGRYIASVSDDRSIRLWPIDSREVLGC------------------------------------------------- 212 (967)
T ss_pred --ccCCcEEEEEecCcceeeeecccccccCc-------------------------------------------------
Confidence 99999999999999999999998763220
Q ss_pred ccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC-ccceE
Q 043890 206 RLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-TEVIT 283 (509)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~ 283 (509)
...+|...+..++|.|+ .++++ .|-+.++|+.+... + ..+.+| ...|.
T Consensus 213 -------------------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l--------~~y~~h~g~~iw 262 (967)
T KOG0974|consen 213 -------------------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-L--------EVYDEHSGKGIW 262 (967)
T ss_pred -------------------ccccccceeEEEEeccc--eeEEeccceEEEEEecccce-e--------hhhhhhhhccee
Confidence 02689999999999998 78887 99999999766422 2 144555 45788
Q ss_pred EEEEeCCCCcEEEEEEcCCeEEEEECCCCc
Q 043890 284 SAEFHPTHCNMLAYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 284 ~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 313 (509)
.++..++. ...++++.|+.+++||+....
T Consensus 263 ~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 263 KIAVPIGV-IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence 99999987 899999999999999988754
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.1e-07 Score=86.10 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=86.4
Q ss_pred eEEEEECCCCCEEEEE--c-CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 233 INSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
...++++|+|++|++. + +..|.+.|+.+++...++- . .....-...+++ . +.+-+.||......+
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~------v---p~~~~vy~t~e~--~-~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD------V---PDCYHIFPTAND--T-FFMHCRDGSLAKVGY 174 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe------C---CCCcEEEEecCC--c-cEEEeecCceEEEEe
Confidence 3467899999999877 4 8999999999877554331 1 111111111111 1 112234444444333
Q ss_pred CCCcc-cCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEEecCCeEEEEECCCC----CCceEEEeecc---
Q 043890 310 RQSAL-CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRDYMTLKLWDINMD----SGPVATFQVHE--- 380 (509)
Q Consensus 310 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~----~~~~~~~~~~~--- 380 (509)
..... .......|...+.+ +. ..+ .|.+ +|+++.....|+|.+.|+... ......+....
T Consensus 175 d~~g~~~~~~~~vf~~~~~~-----v~--~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEY-----LI--NHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred cCCCceEEeeeeeecCCccc-----cc--cCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccc
Confidence 32211 00001111111000 00 012 4456 888888776699999997542 12222222111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEeeC----------CCcEEEEeCCCCceee
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY----------SNLFRVFGCAPGSTEA 431 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~ 431 (509)
++.. ...+ -++++++++.|+.... .+.|.++|..+++.+.
T Consensus 244 ~wrP--------~g~q---~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 244 GWRP--------GGWQ---QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred ccCC--------Ccce---eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 1111 1111 4899999998887431 2579999999998887
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.1e-07 Score=98.03 Aligned_cols=362 Identities=14% Similarity=0.154 Sum_probs=190.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEc----cCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFER----TDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
..+.|.++.|-++..-|+.+..+|.|.+... ..... .....+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~---------------------E~VG~v------------- 119 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI---------------------EIVGSV------------- 119 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee---------------------EEEEEE-------------
Confidence 3578999999999998999999999999933 33222 111111
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCC-CCCcc
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANG-GSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 193 (509)
+..|.+++| |||++.|+....++++.+-+-. ...+......... + +..+.++-+.....-+|.-++ +....
T Consensus 120 --d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~--~-~~~~~VsVGWGkKeTQF~Gs~gK~aa~ 191 (928)
T PF04762_consen 120 --DSGILAASW--SPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDD--F-GESKHVSVGWGKKETQFHGSAGKAAAR 191 (928)
T ss_pred --cCcEEEEEE--CCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccc--c-CCCceeeeccCcccCccCcchhhhhhh
Confidence 267999999 9999999999999998886422 1111111111000 0 000001000000011111110 00000
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c---C---CeEEEEEccCCCceee
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D---D---LRINLWNLEISNQSFN 266 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d---g~i~iwd~~~~~~~~~ 266 (509)
..+-..+. +.....+. ....-..|+|..||.+||+. - . ..++||+-+ +. +..
T Consensus 192 ----------~~~~p~~~--------~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~s 250 (928)
T PF04762_consen 192 ----------QLRDPTVP--------KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQS 250 (928)
T ss_pred ----------hccCCCCC--------ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEe
Confidence 00000000 00000012 34456689999999999976 2 2 578899865 22 211
Q ss_pred EeeccCCccCCCccceEEEEEeCCCCcEEEEEEc---CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 267 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
..+.-.+--.+++|.|.| +++|+.-. ...|.+|.-+.-+ -..|..... .....|..
T Consensus 251 -------tSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLr-----hgeF~l~~~--------~~~~~v~~ 309 (928)
T PF04762_consen 251 -------TSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLR-----HGEFTLRFD--------PEEEKVIE 309 (928)
T ss_pred -------ccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcE-----eeeEecCCC--------CCCceeeE
Confidence 111122223478999999 88888765 3456677644322 122222210 11257899
Q ss_pred EEEecCCCEEEEecCCeEEEEECCCCCCc--eEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEE
Q 043890 344 IKFAKDGRHILSRDYMTLKLWDINMDSGP--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFR 420 (509)
Q Consensus 344 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 420 (509)
+.|++|+..||..-...|.+|-..+ -.. .+.+...... .. ..+.|+|.. ..|...+.+|.+.
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~N-YHWYLKqei~~~~~~-----------~~---~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSN-YHWYLKQEIRFSSSE-----------SV---NFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeC-CEEEEEEEEEccCCC-----------CC---CceEECCCCCCEEEEEecCCcEE
Confidence 9999999999997556699998875 332 2233322211 01 148899854 4577777778887
Q ss_pred EEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe
Q 043890 421 VFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA 500 (509)
Q Consensus 421 iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 500 (509)
.++..-... .-.+.......+...-||....+. -+ .....+.++....+.+...|.+++|+++...+|+-.
T Consensus 375 ~~~~~~~v~---~s~~~~~~D~g~vaVIDG~~lllT----pf--~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~ 445 (928)
T PF04762_consen 375 IYDFAWDVS---RSPGSSPNDNGTVAVIDGNKLLLT----PF--RRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT 445 (928)
T ss_pred EEEEEEEEE---ecCCCCccCceEEEEEeCCeEEEe----cc--cccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE
Confidence 766541111 011111111222222232221000 00 111112223333445678899999999998666666
Q ss_pred c-CceEEEe
Q 043890 501 A-NSLYMYY 508 (509)
Q Consensus 501 ~-~~i~v~~ 508 (509)
. +.+.+|.
T Consensus 446 ~d~~l~~~~ 454 (928)
T PF04762_consen 446 SDGSLSIYE 454 (928)
T ss_pred CCCCEEEEE
Confidence 5 6688875
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=4.3e-08 Score=87.79 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=93.7
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCC-eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKG-SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
...|.-..+.-+. +-++.|..|| .+-+||.++++ ++.++..- +.|.++..+|+|++++.+.
T Consensus 359 ~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~l------------g~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 359 KGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDL------------GNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred CCceEEEEEccCC-cceEEeccCCceEEEEecCCce-----EEEeeCCc------------cceEEEEEcCCCcEEEEEc
Confidence 3444444555554 5688888888 89999999887 34444332 6899999999999999998
Q ss_pred C-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC----cEEEEeCCCCceeee
Q 043890 358 Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN----LFRVFGCAPGSTEAT 432 (509)
Q Consensus 358 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~~~~~ 432 (509)
+ ..+.+.|+.+ +.....-+...+.++ .+.|+|+++++|.+--+| .|++||+..++...
T Consensus 421 dr~el~vididn-gnv~~idkS~~~lIt---------------df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~- 483 (668)
T COG4946 421 DRFELWVIDIDN-GNVRLIDKSEYGLIT---------------DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD- 483 (668)
T ss_pred CceEEEEEEecC-CCeeEecccccceeE---------------EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-
Confidence 7 8999999997 443333333333333 899999999999887665 79999999876554
Q ss_pred eeccCCCceeEEEEcCCC
Q 043890 433 TLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~ 450 (509)
......-..+.+|.|++
T Consensus 484 -vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 484 -VTTPTAYDFSPAFDPDG 500 (668)
T ss_pred -ecCCcccccCcccCCCC
Confidence 22233333344444443
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.18 E-value=4.5e-08 Score=88.48 Aligned_cols=123 Identities=14% Similarity=0.088 Sum_probs=79.4
Q ss_pred EEeC-CCCcEEEEEEcCCeEEEEECCCCcccCC-ceeeeccccC-CCCccccccccccEEEEEEecCCCEEEEec-----
Q 043890 286 EFHP-THCNMLAYSSSKGSIRLIDLRQSALCDS-HAILFEEQEA-PGSRSFFTEIIASISDIKFAKDGRHILSRD----- 357 (509)
Q Consensus 286 ~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----- 357 (509)
.|.+ ++ +++.+..+ |.|.+.|+........ ....+..... ... ..+...-++++|+++.++...
T Consensus 200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w------rP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW------RPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccccccc------CCCcceeEEEcCCCCEEEEEecCCcc
Confidence 4456 66 66666555 9999999766542111 1111111100 000 113455599999999887731
Q ss_pred ----C--CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEee-CCCcEEEEeCCCCce
Q 043890 358 ----Y--MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGS-YSNLFRVFGCAPGST 429 (509)
Q Consensus 358 ----~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~ 429 (509)
+ +.|.++|..+ .+.+..+..... . ..++++||++ +|++.. .++.|.++|..+++.
T Consensus 272 ~thk~~~~~V~ViD~~t-~kvi~~i~vG~~-~---------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKT-GKRLRKIELGHE-I---------------DSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred ccccCCCCEEEEEECCC-CeEEEEEeCCCc-e---------------eeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 1 5899999997 666666653221 1 1899999999 777666 578899999999998
Q ss_pred eeeee
Q 043890 430 EATTL 434 (509)
Q Consensus 430 ~~~~~ 434 (509)
+. .+
T Consensus 335 i~-~i 338 (352)
T TIGR02658 335 LS-SV 338 (352)
T ss_pred Ee-ee
Confidence 87 55
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=5.3e-09 Score=87.66 Aligned_cols=157 Identities=12% Similarity=0.045 Sum_probs=108.6
Q ss_pred eEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 233 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
..++.|++.+..++++ ++|.+.+-+..... +. +.+..+.|+..+....|+...++++.+|+.|+.+..||+|-
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le-----~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-LE-----KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-ee-----ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 5578899989889999 89999855543221 11 22467889999999999998889999999999999999994
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEEecC-CeEEEEECCCCCCceEEEeeccccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDL 389 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 389 (509)
.+. ..+.. ..-|..+|.++.-+| .+.++++|++ ..|++||.++.++++..-... +.+
T Consensus 198 p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGV------ 256 (339)
T KOG0280|consen 198 PKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGV------ 256 (339)
T ss_pred Ccc-----eeeec---------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cce------
Confidence 331 22221 122457899998886 5779999985 999999999767776543322 222
Q ss_pred ccCCCccceeeEEEcCCC--CEEEEeeCCCcEEEEeCCC
Q 043890 390 YENDSIFDKFECCLSGDG--LRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 390 ~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~ 426 (509)
..+.++|.- +.|+ +..-+-.+|-++..
T Consensus 257 ---------WRi~~~p~~~~~lL~-~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 257 ---------WRIKHHPEIFHRLLA-ACMHNGAKILDSSD 285 (339)
T ss_pred ---------EEEEecchhhhHHHH-HHHhcCceEEEecc
Confidence 267777743 3333 33333445555543
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.2e-09 Score=98.46 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=91.4
Q ss_pred cccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 227 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
..|.+.|.++.++.+-..|.++ .|+.+..|+....... . ........+.+++++||+ .++++++ +.|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~-------~~~~~~~~~~sl~is~D~-~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-R-------IWKEQKPLVSSLCISPDG-KILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceee-e-------eeccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence 5688899999999988899998 9999999999875433 2 344556778899999998 8898886 6799
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-----CCEEEEec--CCeEEEEECCC
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-----GRHILSRD--YMTLKLWDINM 368 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~s~~--~~~i~iwd~~~ 368 (509)
+||+++.+. +.+|.+ |.++|+++.|..+ |.+++++. +..+.+|-+..
T Consensus 168 ~~~~~~kev----v~~ftg------------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 168 VLDIETKEV----VITFTG------------HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEccCceE----EEEecC------------CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999885 455554 5589999999887 78888854 36677776653
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=1.9e-08 Score=83.27 Aligned_cols=170 Identities=10% Similarity=0.038 Sum_probs=109.7
Q ss_pred eEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 233 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
+.+++++++++++++. +...|..|.++.......-+ .....++.=.+..|+... ..+|++..||++.|||++.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 7789999999999988 88999999998654322111 122233444678899887 8999999999999999998
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCC--EEEEec-CCeEEEEECCCCCCceEEEeecccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR--HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
... ....... .-..|.+.+..+.|++-|. +|+... .+.+++.|+++ .+..+.+......
T Consensus 235 ~~t----pm~~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~------ 296 (344)
T KOG4532|consen 235 MAT----PMAEISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDV------ 296 (344)
T ss_pred ccc----chhhhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCccc------
Confidence 653 1111111 1234779999999998654 344443 49999999997 4444443322211
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+.....+.++..+|+.++.-+.+.+++ .+.=|++.+..
T Consensus 297 -~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 297 -ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred -cccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 111222234467787777766665554 45556666443
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=3.3e-08 Score=84.84 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=160.7
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEc-cCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFER-TDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.||.+.|++...-|-.+-+.+.+.|.+++||-- +.++. ..++.-..|
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----------------------wpsI~~~mP--------- 68 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----------------------WPSIYHYMP--------- 68 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----------------------CchhhhhCC---------
Confidence 458999999999998888999999999999954 33333 111111111
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
.+++++.+ .+....|+.+-..|++.-+.+...-.+...
T Consensus 69 --~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sedfnkm~~-------------------------------------- 106 (404)
T KOG1409|consen 69 --SPCSAMEY--VSESRRLYVGQDNGTVTEFALSEDFNKMTF-------------------------------------- 106 (404)
T ss_pred --CCceEeee--eccceEEEEEEecceEEEEEhhhhhhhcch--------------------------------------
Confidence 67899998 888889999999999998887643211110
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+ +.+ ..|...+..+-|+.....+++. .|..+.---.+.+..+-.. .
T Consensus 107 ---------~-----------------r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y------~ 153 (404)
T KOG1409|consen 107 ---------L-----------------KDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY------N 153 (404)
T ss_pred ---------h-----------------hhh-hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce------E
Confidence 0 112 5688889999998877777776 6666543333333321110 0
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+ ...-+++.+.- .+...|...|.|.+-.+....+ ..+. .+.+|...+.+++|.+....|.
T Consensus 154 ~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~--~~i~------------~~~~h~~~~~~l~Wd~~~~~Lf 213 (404)
T KOG1409|consen 154 F---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGC--QLIT------------TFNGHTGEVTCLKWDPGQRLLF 213 (404)
T ss_pred e---eccCCCCceee---EEEEecccccceEEEEEeecCC--ceEE------------EEcCcccceEEEEEcCCCcEEE
Confidence 0 00011111110 1233344445554443332221 1123 3445668999999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+|. |..+.+||+.........+.+|...+. .++.-+--+.|.+++.||.|.+|+++...
T Consensus 214 Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~---------------~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 214 SGASDHSVIMWDIGGRKGTAYELQGHNDKVQ---------------ALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccccCceEEEeccCCcceeeeeccchhhhh---------------hhhhhhhheeeeeccCCCeEEEEecccee
Confidence 984 699999999865555667777777654 45555666789999999999999998543
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=6.9e-10 Score=93.57 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=143.6
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh---hhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK---VKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|+++.| ...|.|+++|...|.|.+|.-+... .+.....+.....+ +
T Consensus 27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF---------------------------D 77 (460)
T COG5170 27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF---------------------------D 77 (460)
T ss_pred ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhcccccch---------------------------h
Confidence 67999999 8899999999999999999866433 11111111110000 0
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC---CEEEEEcCCeEEEEEccCCC---------
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG---ETFISADDLRINLWNLEISN--------- 262 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~dg~i~iwd~~~~~--------- 262 (509)
+ +.+ ..-...|..|.|..++ .+|+++.|.+|++|.+....
T Consensus 78 Y--------------LkS--------------leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnl 129 (460)
T COG5170 78 Y--------------LKS--------------LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNL 129 (460)
T ss_pred h--------------hhh--------------ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccc
Confidence 0 000 1122447778886543 34666699999999887431
Q ss_pred ----------ce--------------eeEeeccCCc--cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccC
Q 043890 263 ----------QS--------------FNIVDVKPAN--MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCD 316 (509)
Q Consensus 263 ----------~~--------------~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 316 (509)
.+ ..++..+|.+ ...|...|.++.++.|. ..+++ ..|-.|.+|++.-...+.
T Consensus 130 s~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF 207 (460)
T COG5170 130 SDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF 207 (460)
T ss_pred ccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce
Confidence 00 0111112221 24577888999999986 55555 457789999988655332
Q ss_pred CceeeeccccCCCCccccccccccEEEEEEecCCC--EEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCC
Q 043890 317 SHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR--HILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDS 394 (509)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
..+ .+..+. +.+-..-|++..|+|... ++.+.+.|.|++-|++...-+...-+........+.--+..+.
T Consensus 208 nIV-DiKP~n-------meeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~ei 279 (460)
T COG5170 208 NIV-DIKPHN-------MEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEI 279 (460)
T ss_pred EEE-eccCcc-------HHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHH
Confidence 111 111111 223335688999999544 4444556999999998422111111100000111111112233
Q ss_pred ccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC-ceeeeeeccCC
Q 043890 395 IFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG-STEATTLEASK 438 (509)
Q Consensus 395 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~ 438 (509)
+..|.++.|+++|+++++-+. -+|+|||++.. .++. ++..|.
T Consensus 280 vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik-Ti~~h~ 322 (460)
T COG5170 280 VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK-TIPMHC 322 (460)
T ss_pred hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce-eechHH
Confidence 334458999999999986554 48999999854 4454 665554
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=3.7e-09 Score=99.11 Aligned_cols=171 Identities=10% Similarity=0.134 Sum_probs=122.6
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
....++.| +....+|++|+.||.++|..+.+...-..... +
T Consensus 15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------l------------------------ 55 (1189)
T KOG2041|consen 15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------L------------------------ 55 (1189)
T ss_pred ceEEEEEE--cccCCeEEeccccceeEEEEccccCCcccccc-------------c------------------------
Confidence 45789999 88888999999999999999876532111000 0
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
-...+... -+ .+.+|...|..+.|+.+.+.|.++ .+|.|.+|-+-.+...-+. .-.
T Consensus 56 ----------aa~snLsm------NQ-tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM------iNn 112 (1189)
T KOG2041|consen 56 ----------AAASNLSM------NQ-TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM------INN 112 (1189)
T ss_pred ----------ccccccch------hh-hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH------hhC
Confidence 00000000 01 148999999999999999999999 8999999999876644322 123
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
...+.|.+++|+.+| ..+.....||.|.+=.+..++... +.+++ .-...+.|++|.+.++.+
T Consensus 113 RnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwg---KeLkg--------------~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 113 RNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWG---KELKG--------------QLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred cCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecc---hhcch--------------heccceeecccHHHHHhh
Confidence 356789999999999 889999999999888777665321 12221 134578899999988877
Q ss_pred c-CCeEEEEECCC
Q 043890 357 D-YMTLKLWDINM 368 (509)
Q Consensus 357 ~-~~~i~iwd~~~ 368 (509)
- .|.+++||.+.
T Consensus 175 ~ange~hlydnqg 187 (1189)
T KOG2041|consen 175 KANGETHLYDNQG 187 (1189)
T ss_pred hcCCcEEEecccc
Confidence 5 49999999774
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.4e-09 Score=98.76 Aligned_cols=289 Identities=18% Similarity=0.240 Sum_probs=171.7
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh-hhhhhccCCCCCcccCCCCcccC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK-VKKIADMNVDPSKAVGNGNVASS 175 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (509)
.+..+.||. ..|..+.- -.+.+.+++++.|++|++|.+.... .+.
T Consensus 727 rL~nf~GH~------------~~iRai~A--idNENSFiSASkDKTVKLWSik~EgD~~~-------------------- 772 (1034)
T KOG4190|consen 727 RLCNFTGHQ------------EKIRAIAA--IDNENSFISASKDKTVKLWSIKPEGDEIG-------------------- 772 (1034)
T ss_pred eeecccCcH------------HHhHHHHh--cccccceeeccCCceEEEEEeccccCccc--------------------
Confidence 356777887 77888776 4566789999999999999987431 000
Q ss_pred CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEE
Q 043890 176 SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINL 255 (509)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~i 255 (509)
...|.-+| ..|+.+|.++.|-.+.++++++ ||.|.+
T Consensus 773 ------------------------------------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHl 808 (1034)
T KOG4190|consen 773 ------------------------------------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHL 808 (1034)
T ss_pred ------------------------------------------cceeeeEh-hhccCcccceeeeeccceeeec-cCccee
Confidence 01233344 7899999999998888777766 567999
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSF 333 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (509)
||.-.++.+..+. .....+.+..+..-++ .+-+++.++...+|+++|.+.... ...+..-+.+.
T Consensus 809 WDPFigr~Laq~~------dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~----~~E~kVcna~~---- 874 (1034)
T KOG4190|consen 809 WDPFIGRLLAQME------DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW----TCELKVCNAPG---- 874 (1034)
T ss_pred ecccccchhHhhh------cCcccCCCceeEecccCcchheeeeccchhhheeeecccccc----eeeEEeccCCC----
Confidence 9987665443221 1111222333333333 213344447789999999998764 22333222111
Q ss_pred cccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 334 FTEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
....+.+++..+.|+.++++ +.|.|.+.|.++ ++.+..++..+-... .++ .|..+.|+.
T Consensus 875 ---Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdll---------------qla-apsdq~L~~ 934 (1034)
T KOG4190|consen 875 ---PNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDLL---------------QLA-APSDQALAQ 934 (1034)
T ss_pred ---CchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchhh---------------hhc-CchhHHHHh
Confidence 22568999999999999998 569999999997 666655443321110 222 256677888
Q ss_pred eeCCCcEEE-EeCCCCceeeeeeccCCCcee-------EEEEcCCCCCCcccceeeEeecCCCCCcc----cCCCccccc
Q 043890 413 GSYSNLFRV-FGCAPGSTEATTLEASKNPMR-------RQVQTPSRPSRSLSSITRVVRRGSDVPGV----DTNGNSFDF 480 (509)
Q Consensus 413 ~~~dg~i~i-w~~~~~~~~~~~~~~~~~~v~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 480 (509)
...|..+.+ |..-+|.... ..+....|.. ++..... +...+++....+.... .+..+ .|
T Consensus 935 saldHslaVnWhaldgimh~-q~kpppepahflqsvgpSLV~a~~------Gn~lgVYad~a~~ha~stitKiR~d--~f 1005 (1034)
T KOG4190|consen 935 SALDHSLAVNWHALDGIMHL-QDKPPPEPAHFLQSVGPSLVTAQN------GNILGVYADSAELHAESTITKIRPD--EF 1005 (1034)
T ss_pred hcccceeEeeehhcCCeeee-ccCCCCcchhhhhccCceeEEecc------CcEEEEEecchhhhhhhhhcccccc--cc
Confidence 888888888 8776665444 4443332221 1221111 1233333322222111 11111 23
Q ss_pred ccceEEEEEcCCCcEEEEEec-CceEE
Q 043890 481 TTKLLHLAWHPTENSIACAAA-NSLYM 506 (509)
Q Consensus 481 ~~~i~~~~~~p~~~~la~~~~-~~i~v 506 (509)
.+..+.++--|-..-+..|+. +.|.+
T Consensus 1006 ~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1006 PGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCccceeeeccccchhhccCCCCceee
Confidence 455778888787765555655 66655
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=2.7e-07 Score=97.11 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=106.9
Q ss_pred eEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeec-cCCccC------CCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 233 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDV-KPANME------DLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 233 v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~~~------~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
...++++|+ +.++++. .++.|++||..++... .+... ...... ..-.....|+++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 357899995 5555555 7899999998765321 10000 000000 111345679999998346666667899
Q ss_pred EEEEECCCCcccCCceeeeccccC--CCCcccc--------ccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCc
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEA--PGSRSFF--------TEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGP 372 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~ 372 (509)
|++||+.++.. ..+..... ......+ ...-.....++++++|.++++-. ++.|++||..+ + .
T Consensus 764 Irv~D~~tg~~-----~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g-~ 836 (1057)
T PLN02919 764 IRALDLKTGGS-----RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-K-R 836 (1057)
T ss_pred EEEEECCCCcE-----EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-C-e
Confidence 99999987652 11110000 0000000 00012346889999999777754 49999999985 3 3
Q ss_pred eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 373 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+..+.+....-. ...............++++++|+++++-+.++.|++||+.+++.
T Consensus 837 v~tiaG~G~~G~-~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VTTLAGTGKAGF-KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeccCCcCC-CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 333332111000 00000001111123789999999888888999999999998764
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=6.1e-09 Score=91.22 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=67.3
Q ss_pred cccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 227 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
.+|-..+..++|+||+++++++ .|..|++-.....-.+- .-..+|..-|..++.-++ +.|++++.|++++
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie-------sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE-------SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh-------hhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 6888889999999999999999 89999998776433221 135679999999999987 5799999999999
Q ss_pred EEECCCCcc
Q 043890 306 LIDLRQSAL 314 (509)
Q Consensus 306 vwd~~~~~~ 314 (509)
+||+++++.
T Consensus 219 ~Wd~~sgk~ 227 (390)
T KOG3914|consen 219 LWDITSGKL 227 (390)
T ss_pred EEecccCCc
Confidence 999999986
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=5.7e-07 Score=92.89 Aligned_cols=311 Identities=13% Similarity=0.120 Sum_probs=170.0
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccc-cccccccccccCCcceEEeeeccCCcchhhc-------
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRR-DLERMDYSTSRHPEFRYKTEFQSHEPEFDYL------- 111 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------- 111 (509)
...|.|++||||+.+||..+.+++|.+-..+-.-.....+. .-.+....++.-.+ +-.+.|+|-. .+..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWG-kKeTQF~Gs~--gK~aa~~~~~p 196 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWG-KKETQFHGSA--GKAAARQLRDP 196 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccC-cccCccCcch--hhhhhhhccCC
Confidence 46899999999999999999998888765321100000000 00000000110000 0011222211 1100
Q ss_pred -------cchhhhccceeeEEEEcCCCceEEEeeC---C---CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCC
Q 043890 112 -------KSLEIEEKINKIRWCQTANGALFLLSTN---D---KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNN 178 (509)
Q Consensus 112 -------~~~~~~~~v~~l~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (509)
..+..+..-..|+| -.||+++|+.+. . ..++||+-+ |......+ + ....
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE----~-----------v~gL 258 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE----P-----------VDGL 258 (928)
T ss_pred CCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc----c-----------CCCc
Confidence 00113345677889 999999998865 2 588999976 33221111 0 1122
Q ss_pred ccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEE
Q 043890 179 VSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 257 (509)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd 257 (509)
...++|-|+|+.+..... ......|.+|.-....- .+..-. +......|..+.|++++..||.. .|. |.+|.
T Consensus 259 e~~l~WrPsG~lIA~~q~--~~~~~~VvFfErNGLrh---geF~l~-~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQR--LPDRHDVVFFERNGLRH---GEFTLR-FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred cCCccCCCCCCEEEEEEE--cCCCcEEEEEecCCcEe---eeEecC-CCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 356789999987744433 22223344443221100 000000 12345678999999999999998 554 99999
Q ss_pred ccCCCceeeEeeccCCccC-CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 258 LEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
......-.+. .+. .....+..+.|+|..+..|...+.+|.+..+++.-...
T Consensus 332 ~~NYHWYLKq------ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~---------------------- 383 (928)
T PF04762_consen 332 RSNYHWYLKQ------EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS---------------------- 383 (928)
T ss_pred eeCCEEEEEE------EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE----------------------
Confidence 8865533321 111 12334455999998878888888878887776442210
Q ss_pred ccccEEEEEEecCCC-EEEEecCCeEEEEECCCCCC--ce--EEEeecccccccccccccCCCccceeeEEEcCCCCEEE
Q 043890 337 IIASISDIKFAKDGR-HILSRDYMTLKLWDINMDSG--PV--ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA 411 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~-~l~s~~~~~i~iwd~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 411 (509)
.+-...|+.. .+++-+...+.+-.++...- |+ ..+.... . |.+++|++++..++
T Consensus 384 -----~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~-------------~---v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 384 -----RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPS-------------P---VNDVAFSPSNSRFA 442 (928)
T ss_pred -----ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCC-------------C---cEEEEEeCCCCeEE
Confidence 0000112222 23333446777777664211 11 2222221 1 23899999998899
Q ss_pred EeeCCCcEEEEeCCCC
Q 043890 412 TGSYSNLFRVFGCAPG 427 (509)
Q Consensus 412 ~~~~dg~i~iw~~~~~ 427 (509)
+-..||.|.+|.....
T Consensus 443 vl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEECCCCEEEEEecCC
Confidence 9999999999996543
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.6e-09 Score=97.19 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=123.8
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
..||+..|..++--.+.+-+++++.|.+|++|.+...-. .........+++.|+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------~~~tsaCQfTY~aHk---------- 784 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------EIGTSACQFTYQAHK---------- 784 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------ccccceeeeEhhhcc----------
Confidence 456999999888777888899999999999999874322 011122357788998
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
.+|+++.| -.+.++++++ ||.|.+||.--++......
T Consensus 785 --k~i~~igf--L~~lr~i~Sc--D~giHlWDPFigr~Laq~~------------------------------------- 821 (1034)
T KOG4190|consen 785 --KPIHDIGF--LADLRSIASC--DGGIHLWDPFIGRLLAQME------------------------------------- 821 (1034)
T ss_pred --Ccccceee--eeccceeeec--cCcceeecccccchhHhhh-------------------------------------
Confidence 88999999 7777777655 8899999987665443111
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
|+. ..+..+.|.++. +-+...++.+ ...+|+++|.+..+...++ +..
T Consensus 822 ------------dap---------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~---kVc 870 (1034)
T KOG4190|consen 822 ------------DAP---------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCEL---KVC 870 (1034)
T ss_pred ------------cCc---------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeE---Eec
Confidence 000 011112233332 1133444444 6889999999987765443 212
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcc
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
...+....+.+++..+.| +.++.+-.+|.|.+.|.++++.
T Consensus 871 na~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred cCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCce
Confidence 334456778999999998 9999999999999999999985
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=105.38 Aligned_cols=167 Identities=11% Similarity=0.169 Sum_probs=127.3
Q ss_pred cccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 227 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
..+-..|.++.-+|...+.++| .||.|++|....+.++... ...+. ..++.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------RTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------eccCc-chhhhhhhcccC-CceeeeccCCcee
Confidence 3445668888889999999999 9999999999887765542 22333 889999999999 8999999999999
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe---cC-CeEEEEECCCCCCceEEEeeccc
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~-~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
+|...... ...++.++ .....+.|-. ..++++ +| +.+.+||...+...-..-..|.+
T Consensus 2277 l~q~~pk~-----~~s~qchn------------k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTSWQCHN------------KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ecccCCcc-----eeccccCC------------ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99887322 34444443 5667777764 566664 24 89999997654333333367877
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
..+ ++++-|..+.|++|+.+|.|++||++..+++. +++.
T Consensus 2338 gaT---------------~l~~~P~~qllisggr~G~v~l~D~rqrql~h-~~~~ 2376 (2439)
T KOG1064|consen 2338 GAT---------------VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH-TFQA 2376 (2439)
T ss_pred Cce---------------EEEEcCcceEEEecCCcCcEEEeehHHHHHHH-Hhhh
Confidence 765 89999999999999999999999999877776 5554
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.3e-07 Score=89.52 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=61.6
Q ss_pred EEEECCCCCEEEEE--cCC--eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC---------
Q 043890 235 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 301 (509)
Q Consensus 235 ~i~~~~~~~~l~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d--------- 301 (509)
...|+|||+.|+.. ..+ .|++.|+.+++.. ++ ...+. . ...|+|+| +.++.....
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rl------t~~g~--~--~~~~SPDG-~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QV------VFHGK--N--NSSVSTYK-NYIVYSSRETNNEFGKNT 348 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eC------ccCCC--c--CceECCCC-CEEEEEEcCCCcccCCCC
Confidence 34799999877755 223 6777788765531 11 11111 1 24899999 666655543
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C---CeEEEEECC
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y---MTLKLWDIN 367 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~ 367 (509)
..|.+.|+.++.. +.+... .......|+|||+.++... . ..+.+.++.
T Consensus 349 ~~I~v~d~~~g~~-----~~LT~~-------------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 349 FNLYLISTNSDYI-----RRLTAN-------------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cEEEEEECCCCCe-----EECCCC-------------CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 3678888877752 333221 1123478999999887653 2 346666776
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=8.9e-09 Score=96.93 Aligned_cols=275 Identities=14% Similarity=0.196 Sum_probs=168.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCcccccccc---cc-----------------------ccccCC
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERM---DY-----------------------STSRHP 93 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~---~~-----------------------~~~~~~ 93 (509)
.+++.++..+|.|+-+|.++..| +.+-|++..-.....+..+... .. .++.+.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 56788999999999999999887 6677877654433333332110 01 111111
Q ss_pred cceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC-ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCc
Q 043890 94 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNV 172 (509)
Q Consensus 94 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (509)
+...-..+.+|. ..|+.+.| .++. ..+++++-|-.+..||+++...-
T Consensus 103 ~~aIef~lhghs------------raitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~p------------------ 150 (1081)
T KOG0309|consen 103 SNAIEFVLHGHS------------RAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHRP------------------ 150 (1081)
T ss_pred ccceEEEEecCc------------cceecccc--CCCCCcceeeccccccceeeeccCCCcc------------------
Confidence 222334455665 78999999 4433 37888999999999998764311
Q ss_pred ccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEEcCC
Q 043890 173 ASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISADDL 251 (509)
Q Consensus 173 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~dg 251 (509)
+..|+.+ ......+.|+- +++.+|+....
T Consensus 151 --------------------------------~ys~~~w------------------~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 151 --------------------------------FYSTSSW------------------RSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred --------------------------------eeeeecc------------------cccCceeeecccCcchhhhccCC
Confidence 2222221 12244577865 45666666677
Q ss_pred eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCc
Q 043890 252 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSR 331 (509)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
.|++||++.+..... .+++|...|..++|+.--...+.+++.|++|+.||........+ +.....
T Consensus 181 ~i~vwd~r~gs~pl~-------s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt~------ 245 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLC-------SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTTN------ 245 (1081)
T ss_pred ceEEEeccCCCcceE-------EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eecccc------
Confidence 899999998765432 55678889999998865446788999999999999887643211 111111
Q ss_pred cccccccccEEEEEEecCCCEEEE--e-cCCeEE---------EEECCCCCCceEEEeecccccccccccccCCCcccee
Q 043890 332 SFFTEIIASISDIKFAKDGRHILS--R-DYMTLK---------LWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s--~-~~~~i~---------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (509)
.+|..-++.|-|+-... . ++..+. .|+..+...++..+.+|...+... .+..+-
T Consensus 246 -------~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF---lWR~r~---- 311 (1081)
T KOG0309|consen 246 -------FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF---LWRKRK---- 311 (1081)
T ss_pred -------CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH---hhhhcc----
Confidence 35666666664442222 1 223333 344444567889999998765411 110000
Q ss_pred eEEEcCCC--CEEEEeeCCCcEEEEeCCC
Q 043890 400 ECCLSGDG--LRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 400 ~~~~s~~~--~~l~~~~~dg~i~iw~~~~ 426 (509)
.+.+..|. -.|+|-+.|..+++|-+.+
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccH
Confidence 11222222 2589999999999999864
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=90.11 Aligned_cols=257 Identities=12% Similarity=0.124 Sum_probs=167.6
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
...-.++.|+|.| ++|.|+.. .|.|-|..+.+. ++.+.-|. ..
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~-----------------------iqsie~h~------------s~ 57 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQL-----------------------IQSIELHQ------------SA 57 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhh-----------------------hhccccCc------------cc
Confidence 3336789999887 78887754 788999887776 66777777 67
Q ss_pred ceeeEEEEcC----------CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCC
Q 043890 120 INKIRWCQTA----------NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 120 v~~l~~~~~~----------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
|+.++|.|-| ..-+|+++...|.|.+||...+..+..
T Consensus 58 V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--------------------------------- 104 (1062)
T KOG1912|consen 58 VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--------------------------------- 104 (1062)
T ss_pred eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh---------------------------------
Confidence 9999996321 122567777789999999987654332
Q ss_pred CCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC---CC-CEEEEE-cCCeEEEEEccCCCce
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS---DG-ETFISA-DDLRINLWNLEISNQS 264 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~~~-~dg~i~iwd~~~~~~~ 264 (509)
+..|..++..++|-+ +. .+|+.- ....+.+|+..+++..
T Consensus 105 ------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 105 ------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred ------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence 255666778888844 34 344444 7889999999998865
Q ss_pred eeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccC---CCCcc--ccc----
Q 043890 265 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEA---PGSRS--FFT---- 335 (509)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~--~~~---- 335 (509)
.+ .........++.+.|-..+.+..-+..|.+.+-+.-..+.-..+.+.+..... +.+.. ...
T Consensus 149 Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 149 WK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred ec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence 42 23334566779999977778888888888888776544332222333322111 00000 000
Q ss_pred -------cccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC
Q 043890 336 -------EIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG 407 (509)
Q Consensus 336 -------~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 407 (509)
........++|+|.-+.++.... ..+.|+|++- ..++.......+... -+.+-|++
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak---------------fv~vlP~~ 284 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK---------------FVDVLPDP 284 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc---------------eeEeccCC
Confidence 00112334677886664444443 8899999996 677777665554433 45666655
Q ss_pred --CEEEEeeCCCcEEEEeCCC
Q 043890 408 --LRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 408 --~~l~~~~~dg~i~iw~~~~ 426 (509)
..|++...||.+.+|-.+.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceEEEEecCCeEEEEEeec
Confidence 4688999999999998664
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=3.1e-07 Score=86.86 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=95.8
Q ss_pred CeEEEEECCCCCE-EEE-E-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC--CeE
Q 043890 232 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 304 (509)
Q Consensus 232 ~v~~i~~~~~~~~-l~~-~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d--g~i 304 (509)
......|+|+|+. ++. . . +..|+++|+.+++.. .+....+......|+|||.+++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5678899999984 553 4 3 467999999876532 1222344556788999994454555444 467
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC----CeEEEEECCCCCCceEEEeecc
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY----MTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
.++|+.++.. +.+.... .......|+|||+.|+..++ ..|+++|+.+ +.. +.+....
T Consensus 260 y~~dl~~g~~-----~~LT~~~------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTL-----TQITNYP------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcE-----EEcccCC------------CccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 7888877652 2222111 11234579999998877543 3688888875 332 2222111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEeeCC---------CcEEEEeCCCCcee
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---------NLFRVFGCAPGSTE 430 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iw~~~~~~~~ 430 (509)
.. ...|+|||++|+..+.. ..|++.|+.+++..
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 11 34899999998877653 36777888777643
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=1.5e-06 Score=91.69 Aligned_cols=239 Identities=10% Similarity=0.075 Sum_probs=131.8
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeecc--CCccCCC-------ccceEEEEEeCCCCcEEEEEEc
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK--PANMEDL-------TEVITSAEFHPTHCNMLAYSSS 300 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~-------~~~i~~l~~~~~~~~~l~~~~~ 300 (509)
....++++++++.|+++ .++.|+++|+.++. ...+.... .....+. -.....++++|++..++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 35678999988877776 57889999987643 21111000 0000000 1234689999954377778788
Q ss_pred CCeEEEEECCCCcccCCceeeeccccCCCCc---cccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEE
Q 043890 301 KGSIRLIDLRQSALCDSHAILFEEQEAPGSR---SFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVAT 375 (509)
Q Consensus 301 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~ 375 (509)
++.|++||..++.. ..+......... ......-.....++++|++..|+.++ ++.|++||+.+. .. ..
T Consensus 704 ~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg-~~-~~ 776 (1057)
T PLN02919 704 QHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG-GS-RL 776 (1057)
T ss_pred CCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC-cE-EE
Confidence 89999999987752 333221100000 00000113467799999998666553 499999999863 22 11
Q ss_pred Eeecccc-cccccccc------cCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 376 FQVHEYL-RPKLCDLY------ENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 376 ~~~~~~~-~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
+.+.... ......+. .......-..++++++|+++++-..++.|++||..++.... +.+.... -..
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t--iaG~G~~-----G~~ 849 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT--LAGTGKA-----GFK 849 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE--EeccCCc-----CCC
Confidence 1110000 00000000 00000111278999999988888899999999998776543 2221100 000
Q ss_pred CCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 449 SRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
++.. ..+ .+ .....++++++|+++++-+. +.|++|+.
T Consensus 850 dG~~--------------------~~a---~l-~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 850 DGKA--------------------LKA---QL-SEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCcc--------------------ccc---cc-CCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 1100 000 01 34578999999987666555 78888863
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=1.6e-06 Score=73.26 Aligned_cols=191 Identities=17% Similarity=0.173 Sum_probs=116.1
Q ss_pred CeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc--cCCCccceEEEEEeCCC-----CcEEEEEEcCCe
Q 043890 232 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN--MEDLTEVITSAEFHPTH-----CNMLAYSSSKGS 303 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~~~~~-----~~~l~~~~~dg~ 303 (509)
.-+.++|+||+.+||.+ +.|+|++||+.. ..++.+ ++.. .......|..+.|-+.. ...|++-..+|.
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 45679999999999999 999999999985 333332 2221 12235677777776532 235777778888
Q ss_pred EEEEECCCCcc-cCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec---CC---------eEEEEECCCCC
Q 043890 304 IRLIDLRQSAL-CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD---YM---------TLKLWDINMDS 370 (509)
Q Consensus 304 i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~~---------~i~iwd~~~~~ 370 (509)
++-|-+..+.. -....+.|. ....+..+|.++.++|..++|+.|+ .. -+..|.+-+ .
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfs---------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~ 190 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFS---------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-D 190 (282)
T ss_pred eeeEEEEcccCCcceeeEEEE---------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-C
Confidence 88777643211 000112221 1122356899999999988888753 11 366777765 3
Q ss_pred CceEE-Eeecccccc------c---ccc--cc--cCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 371 GPVAT-FQVHEYLRP------K---LCD--LY--ENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 371 ~~~~~-~~~~~~~~~------~---~~~--~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
.+... ....+..+. . +.. ++ .....-.|+.+..||||+.||+...+|.|.+|++.+-.+.. ....
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~-~W~~ 269 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR-SWKQ 269 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc-ccch
Confidence 33322 111111111 0 000 11 01122336699999999999999999999999999766655 4443
Q ss_pred C
Q 043890 437 S 437 (509)
Q Consensus 437 ~ 437 (509)
+
T Consensus 270 ~ 270 (282)
T PF15492_consen 270 D 270 (282)
T ss_pred h
Confidence 3
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.93 E-value=9.9e-07 Score=80.03 Aligned_cols=226 Identities=11% Similarity=0.106 Sum_probs=132.5
Q ss_pred eEEEEECCCCCEEEEE-c---------------CCeEEEEEccCCCceeeEeeccCCccCCCccc--eE-EEEEeCCCCc
Q 043890 233 INSISNNSDGETFISA-D---------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEV--IT-SAEFHPTHCN 293 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--i~-~l~~~~~~~~ 293 (509)
|..+.|+|.+++|.+- . ++.+.+||+.++.-+... ..-..+ .. -+.|+-++ +
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf--------~~~~q~~~~Wp~~k~s~~D-~ 144 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF--------NGISQPYLGWPVLKFSIDD-K 144 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec--------cccCCcccccceeeeeecc-h
Confidence 6677777777777753 2 235899999987644322 211111 23 57788886 6
Q ss_pred EEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC--CEEEE------ecCCeEEEEE
Q 043890 294 MLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG--RHILS------RDYMTLKLWD 365 (509)
Q Consensus 294 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s------~~~~~i~iwd 365 (509)
++|-- ....+.|+++ +......+.+.+. ...|....|+|.+ ..|+. +...+++||.
T Consensus 145 y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--------------~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 145 YVARV-VGSSLYIHEI-TDNIEEHPFKNLR--------------PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred hhhhh-ccCeEEEEec-CCccccCchhhcc--------------ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 66544 4567999998 4443222222222 1478899999963 34443 1248999999
Q ss_pred CCCCCCceEEEee--cccccccccccccCCCccceeeEEEcCCCCEEEEee-----------CCCcEEEEeCCCCceeee
Q 043890 366 INMDSGPVATFQV--HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-----------YSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 366 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~iw~~~~~~~~~~ 432 (509)
+.. +..+.+... -.+. .+.|.+.|++|+.-. ....++|+++......
T Consensus 209 Ip~-~s~l~tk~lfk~~~~-----------------qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-- 268 (561)
T COG5354 209 IPK-NSVLVTKNLFKVSGV-----------------QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-- 268 (561)
T ss_pred ccC-CCeeeeeeeEeeccc-----------------EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc--
Confidence 985 454443222 2211 688999999877432 1357899998844332
Q ss_pred eeccCCCceeEEEEcCCCCCCcc-cceeeEeecCCCCCcccCCCccc--ccccceEEEEEcCCCcEEEEEec----CceE
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSL-SSITRVVRRGSDVPGVDTNGNSF--DFTTKLLHLAWHPTENSIACAAA----NSLY 505 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~la~~~~----~~i~ 505 (509)
+...-.++|...+|.|.++...+ .+. --......++.++.. .....=+.+.|+|.++++++++= +++.
T Consensus 269 V~~~~~~pVhdf~W~p~S~~F~vi~g~-----~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~ 343 (561)
T COG5354 269 VEKDLKDPVHDFTWEPLSSRFAVISGY-----MPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE 343 (561)
T ss_pred eeccccccceeeeecccCCceeEEecc-----cccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceE
Confidence 33366899999999998877321 111 011112233444311 11333466777777777776543 4555
Q ss_pred EEe
Q 043890 506 MYY 508 (509)
Q Consensus 506 v~~ 508 (509)
+|+
T Consensus 344 i~~ 346 (561)
T COG5354 344 IFD 346 (561)
T ss_pred Eec
Confidence 554
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=4.1e-06 Score=74.06 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=97.5
Q ss_pred eEEEEEC-CCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC--------Ce
Q 043890 233 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------GS 303 (509)
Q Consensus 233 v~~i~~~-~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d--------g~ 303 (509)
...+.+. +++ .|+.+..+.+.++|..+++.. .+.... .-.......+.+++.|+| ++.++.... |.
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~-~~~~~~--~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVT-VLADLP--DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETTTTEEE-EEEEEE--TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecCCCcEE-EEeecc--CCCcccCCCceEEEcCCC-CEEEEecCCCccccccccc
Confidence 5567776 564 555553344556688876422 221110 011145678899999998 777766543 55
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C-CeEEEEECCCCCCceE---EEee
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-MTLKLWDINMDSGPVA---TFQV 378 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~---~~~~ 378 (509)
|..++.. ++. ..+... ....+.++|+|+++.|+.+. . +.|..|++......+. .+..
T Consensus 117 v~~~~~~-~~~-----~~~~~~------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~ 178 (246)
T PF08450_consen 117 VYRIDPD-GKV-----TVVADG------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID 178 (246)
T ss_dssp EEEEETT-SEE-----EEEEEE------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE
T ss_pred eEEECCC-CeE-----EEEecC------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE
Confidence 7777777 442 222111 13578999999999887653 3 8899999975333222 2211
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
........ -.+++..+|++.++....+.|.+++.+ |+.+.
T Consensus 179 ~~~~~g~p------------DG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 179 FPGGPGYP------------DGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp -SSSSCEE------------EEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred cCCCCcCC------------CcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 11110000 168999999988887889999999988 87776
No 288
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=1.6e-06 Score=82.10 Aligned_cols=276 Identities=13% Similarity=0.096 Sum_probs=145.5
Q ss_pred CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC
Q 043890 52 GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 131 (509)
Q Consensus 52 ~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 131 (509)
+..+++++.+|.|..+|..+++. ...+.-.. ....... .++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~-----------------------~W~~~~~~------------~~~~~p~----v~~ 105 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR-----------------------LWRVDLDE------------RLSGGVG----ADG 105 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE-----------------------eeeecCCC------------CcccceE----EcC
Confidence 56788888899999999988876 33332222 1011222 256
Q ss_pred ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccccc
Q 043890 132 ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVT 211 (509)
Q Consensus 132 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 211 (509)
..++.++.++.+..+|..+++.......... +.+ ... +....++....++.+..+|..
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~~------~p~-------v~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VLS------PPL-------VANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCce---------eec------CCE-------EECCEEEEECCCCeEEEEEcC
Confidence 6788888999999999999887654332211 000 000 000111222334456666655
Q ss_pred ccccceeeeeeee-e-ecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc--cc---e-
Q 043890 212 SNETSLVARCRRV-Y-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT--EV---I- 282 (509)
Q Consensus 212 ~~~~~~~~~~~~~-~-~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i- 282 (509)
+.+.......... + ......+ .. .+..++.+ .++.+..+|.++++...+.. .....+.. .. +
T Consensus 164 tG~~~W~~~~~~~~~~~~~~~sp----~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~---~~~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 164 TGERLWTYSRVTPALTLRGSASP----VI--ADGGVLVGFAGGKLVALDLQTGQPLWEQR---VALPKGRTELERLVDVD 234 (377)
T ss_pred CCceeeEEccCCCceeecCCCCC----EE--ECCEEEEECCCCEEEEEEccCCCEeeeec---cccCCCCCchhhhhccC
Confidence 4433221110000 0 0000001 11 12356667 78999999998876543210 00000000 00 0
Q ss_pred EEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cCCeE
Q 043890 283 TSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DYMTL 361 (509)
Q Consensus 283 ~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i 361 (509)
.+..+. + ..++.++.+|.+..||+++++..+. .+. ........ ++..++.+ .+|.+
T Consensus 235 ~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~~W~----~~~--------------~~~~~p~~--~~~~vyv~~~~G~l 291 (377)
T TIGR03300 235 GDPVVD--G-GQVYAVSYQGRVAALDLRSGRVLWK----RDA--------------SSYQGPAV--DDNRLYVTDADGVV 291 (377)
T ss_pred CccEEE--C-CEEEEEEcCCEEEEEECCCCcEEEe----ecc--------------CCccCceE--eCCEEEEECCCCeE
Confidence 111122 3 4677788899999999998874321 110 01111222 34455554 46999
Q ss_pred EEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 362 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
+.+|..+ ++.+-.......... ..... .+..|++++.+|.|+++|..+|+.+. .++.+.
T Consensus 292 ~~~d~~t-G~~~W~~~~~~~~~~--------------ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~-~~~~~~ 350 (377)
T TIGR03300 292 VALDRRS-GSELWKNDELKYRQL--------------TAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA-RLKTDG 350 (377)
T ss_pred EEEECCC-CcEEEccccccCCcc--------------ccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE-EEEcCC
Confidence 9999986 454433311111000 01122 46688899999999999999998886 555443
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.9e-07 Score=83.22 Aligned_cols=320 Identities=15% Similarity=0.167 Sum_probs=192.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|.+.|+.+.-. -.+++.+++.||.++.|--..... ..++..+..|. .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG--------------------vEfVKhFraHL------------~ 54 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG--------------------VEFVKHFRAHL------------G 54 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc--------------------eeehhhhHHHH------------H
Confidence 78888877644 458999999999999997543221 12345566666 6
Q ss_pred cceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 119 KINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
.|.+++. +-++.++.|.+. |..++++|+++-..........-+- ...|..+-......+.+
T Consensus 55 ~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~s~IAV 116 (558)
T KOG0882|consen 55 VILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKISLIAV 116 (558)
T ss_pred HHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCeeeeEEe
Confidence 7888888 889989999777 9999999999876654443322220 00111111111112233
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCC-Cceee--EeeccC-
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS-NQSFN--IVDVKP- 272 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~-~~~~~--~~~~~~- 272 (509)
+....+.+.+.|-...... ...+..-|..+|.++.+.+-+..+++. ..|.|.-|..+.. +..-. .+.+|.
T Consensus 117 s~~~sg~i~VvD~~~d~~q-----~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e 191 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQ-----DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE 191 (558)
T ss_pred ecccCCCcEEECCcCCcCc-----cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc
Confidence 3334444555553322211 112235688999999999999999999 7999999988731 10000 000111
Q ss_pred ---CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc-----CCCCcc------------
Q 043890 273 ---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE-----APGSRS------------ 332 (509)
Q Consensus 273 ---~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~------------ 332 (509)
..+........++.|+|++ ..+.+-..|..|++++.+++++. +.++... .+....
T Consensus 192 TdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklv----qeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 192 TDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLV----QEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred chhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhh----hhhhccchhhhhccccccccceeehhhhhh
Confidence 1122345667899999998 89999999999999999999863 2221110 010000
Q ss_pred ---cccccc-ccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccc------------cCCCcc
Q 043890 333 ---FFTEII-ASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLY------------ENDSIF 396 (509)
Q Consensus 333 ---~~~~~~-~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 396 (509)
.+..|. ..-..+.|...|++|+.++-=.|++.++.+ +...+.+-..+..+.....+| .-.+..
T Consensus 267 verelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n 345 (558)
T KOG0882|consen 267 VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN 345 (558)
T ss_pred HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC
Confidence 011122 234567899999999998776689999987 455544432221111000000 000001
Q ss_pred ceeeEEEcCCCCEEEEeeCCCcEEEE
Q 043890 397 DKFECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 397 ~v~~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
+ .+.+.+|...++++-..+.+++|
T Consensus 346 p--~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 346 P--LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred c--ccccCCCCeEEEeeeecceEEEE
Confidence 1 23467787888888888899998
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.2e-07 Score=90.00 Aligned_cols=413 Identities=10% Similarity=0.041 Sum_probs=198.5
Q ss_pred ecccceEEEEECCC------------CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCC
Q 043890 38 QEVDIISAIEFDKT------------GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHE 105 (509)
Q Consensus 38 ~h~~~I~~v~~s~~------------~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 105 (509)
.|...|+.+.|.|. .-+||+++..|.|.+||...... ...++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC
Confidence 38899999999983 13688899999999999987766 44555555
Q ss_pred cchhhccchhhhccceeeEEEEcCCCc--eEEEeeCCCeEEEEeccchhhhhhhccCCCCCc-ccCCCCcccCCCCccCC
Q 043890 106 PEFDYLKSLEIEEKINKIRWCQTANGA--LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSK-AVGNGNVASSSNNVSPK 182 (509)
Q Consensus 106 ~~~~~~~~~~~~~~v~~l~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (509)
++|..++|.+..+.. .|+.-....++.+|+..+|+............. +.- ...+...+
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~------DPfd~rh~ 171 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV------DPFDSRHF 171 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee------CCCCcceE
Confidence 789999997554433 455556677999999999876655433222211 000 00011112
Q ss_pred ccccCCCCC-cceecCCCCCCCccccccccccccc--eeeeeeeeeecccccC---------eEEEEECCCCC-EEEEEc
Q 043890 183 PYLANGGSP-SKEFSFPPGGIPSLRLPTVTSNETS--LVARCRRVYAHAHDYH---------INSISNNSDGE-TFISAD 249 (509)
Q Consensus 183 ~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------v~~i~~~~~~~-~l~~~~ 249 (509)
.+...+.++ ..+..-....+...+.+.+.+.... ...+.... -..++.. ...++|+|.-+ .+...-
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at-~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT-GNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc-cccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 222222221 1111111122222222222222000 00000000 0000000 12345677643 344445
Q ss_pred CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCC-cEEEEEEcCCeEEEEECCCCcccCC-ceeee--ccc
Q 043890 250 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDLRQSALCDS-HAILF--EEQ 325 (509)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~--~~~ 325 (509)
...+.++|++-...+..+ .+. .+.+.-+.+-|+.. ..|+....||.+.+|--+......+ +...+ +..
T Consensus 251 prellv~dle~~~~l~vv------pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVV------PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred ccceEEEcchhhceeEEE------Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 667999999865544322 222 23334455666542 5788889999999997654221000 00000 000
Q ss_pred cCCCCccccccccccEEEEEEecCCC-EEEE-ecCCeEEEEECCCCCCceEEEee-----------c--cccc--ccccc
Q 043890 326 EAPGSRSFFTEIIASISDIKFAKDGR-HILS-RDYMTLKLWDINMDSGPVATFQV-----------H--EYLR--PKLCD 388 (509)
Q Consensus 326 ~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s-~~~~~i~iwd~~~~~~~~~~~~~-----------~--~~~~--~~~~~ 388 (509)
.+......+. .-.+......|... .++. -++|.+.+|.+.+ ++....... . .-.+ +.+..
T Consensus 323 ~Q~~~vr~m~--~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~ 399 (1062)
T KOG1912|consen 323 EQVHVVRPME--EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLIS 399 (1062)
T ss_pred cceEEEeech--hcccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCceeehhhccccc
Confidence 0000000000 01112222334322 2222 2457788888874 221110000 0 0000 00000
Q ss_pred cc----cC--------CCccceeeEEEcCCC-------CEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCC
Q 043890 389 LY----EN--------DSIFDKFECCLSGDG-------LRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPS 449 (509)
Q Consensus 389 ~~----~~--------~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~ 449 (509)
+. +. .++-...-..-.|.+ .++|.|...|+|.++|+.++..-+ .+..|.+.|..+-|...
T Consensus 400 LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~-~fsvht~~VkgleW~g~ 478 (1062)
T KOG1912|consen 400 LSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA-SFSVHTSLVKGLEWLGN 478 (1062)
T ss_pred hhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhh-hhcccccceeeeeeccc
Confidence 00 00 000000001111222 258899999999999999998777 99999999998877643
Q ss_pred CCCCccc---------ceee-----EeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 450 RPSRSLS---------SITR-----VVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 450 ~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
..-...+ .... ....|.....-.+.+. -..+|..+..+..+.+|++.-. .-+.+|
T Consensus 479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~---despI~~irvS~~~~yLai~Fr~~plEiw 548 (1062)
T KOG1912|consen 479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP---DESPIRAIRVSSSGRYLAILFRREPLEIW 548 (1062)
T ss_pred eeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC---CcCcceeeeecccCceEEEEecccchHHH
Confidence 3221110 0000 0011111111111111 1468999999999999998865 344444
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=5.3e-08 Score=85.48 Aligned_cols=163 Identities=12% Similarity=0.182 Sum_probs=102.9
Q ss_pred eEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe---EEEEE
Q 043890 233 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IRLID 308 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~---i~vwd 308 (509)
...+..++.++++|++ .+....+++++......++.. ...-...-+++.|..+. .....+..-|. +.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~-----~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD-----VSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeee-----EeecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3445668889999999 777777777765443121111 11111222344444443 33333333333 33443
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe-ecccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ-VHEYLRPKL 386 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 386 (509)
...+. ...+-+|.+-+..++|+||++++++++ |..|+|-.+.. .-.+..+. +|...+.
T Consensus 139 ~~~~~-----------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS-- 198 (390)
T KOG3914|consen 139 ADSGR-----------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVS-- 198 (390)
T ss_pred ccccC-----------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhee--
Confidence 33222 122445668899999999999999997 59999988775 34444443 5777765
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
.++.- ++..|++++.|++|++||+.+|+.+. ++..
T Consensus 199 -------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L~-t~dl 233 (390)
T KOG3914|consen 199 -------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLLD-TCDL 233 (390)
T ss_pred -------------eeeec-cCceeeecCCCCcEEEEecccCCccc-ccch
Confidence 56664 45668999999999999999999886 5554
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=2.7e-08 Score=93.76 Aligned_cols=184 Identities=16% Similarity=0.251 Sum_probs=127.5
Q ss_pred eEEEEECCC--CCEEEEE-cCCeEEEEEccCCC-ceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 233 INSISNNSD--GETFISA-DDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 233 v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
|-...|+|. ..+-++. ....-.+|++.... ..+++ .+.+|...|+.+-|+|..+.++++++.|-.+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceeee
Confidence 444556554 3344444 66667788886532 22222 46789999999999999999999999999999999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
++.... +++.+..-. .....++|+- ++..+|+.-.+.|.+||++.+..++..+++|...+.
T Consensus 144 ~rSp~~---p~ys~~~w~------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn--- 205 (1081)
T KOG0309|consen 144 MRSPHR---PFYSTSSWR------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN--- 205 (1081)
T ss_pred ccCCCc---ceeeeeccc------------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee---
Confidence 998763 344444332 4567788986 455555554588999999998889999988755433
Q ss_pred ccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 388 DLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
.+.|.. -...+.+.+.|++|+.||................|++.-.+.|-+..
T Consensus 206 ------------~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 206 ------------SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ------------hHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence 555543 23457889999999999987554433344455567777666665554
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.81 E-value=6.1e-06 Score=72.95 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=88.8
Q ss_pred cCeEEEEECCCCCEEEEE-cC--------CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC
Q 043890 231 YHINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 301 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d 301 (509)
...+.+++.++|++.++. .. |.|..++.. ++ ... ....-...+.|+|+|++..++++-+..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~--------~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTV--------VADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEE--------EEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEE--------EecCcccccceEECCcchheeeccccc
Confidence 447889999999977765 22 456666666 22 211 112234568999999983344566678
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecc
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
+.|..+++..........+.+.... .-.+....+++..+|++.++.- .+.|.++|.+ ++.+..+....
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~ 224 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFP---------GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPV 224 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-S---------SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SS
T ss_pred ceeEEEeccccccceeeeeeEEEcC---------CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCC
Confidence 8999999975432111122221111 0013478899999999877754 4999999987 56777666553
Q ss_pred cccccccccccCCCccceeeEEEc-CCCCEEEEe
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLS-GDGLRVATG 413 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~ 413 (509)
...+ +++|. ++.+.|+..
T Consensus 225 ~~~t---------------~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 PRPT---------------NCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSEE---------------EEEEESTTSSEEEEE
T ss_pred CCEE---------------EEEEECCCCCEEEEE
Confidence 3322 88994 666655544
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=2.3e-07 Score=76.75 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=62.5
Q ss_pred cCeEEEEECCCCCE-EEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 231 YHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 231 ~~v~~i~~~~~~~~-l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
..|.+++-+|..+. +++| +||.+-+||.+...... ..+..|+.+|..+-|+|..+..|+++++||.+-.||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 34888999987554 5566 89999999999764333 357889999999999999889999999999999999
Q ss_pred CCCC
Q 043890 309 LRQS 312 (509)
Q Consensus 309 ~~~~ 312 (509)
..+.
T Consensus 253 as~~ 256 (319)
T KOG4714|consen 253 ASTT 256 (319)
T ss_pred CCCc
Confidence 8853
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=3.6e-08 Score=84.65 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=114.6
Q ss_pred CCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceee
Q 043890 242 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAIL 321 (509)
Q Consensus 242 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 321 (509)
+-.+++|.+..|-+-|++++-+. .+. ..+.|.++.|...+ +++..|..+|.|..+|++.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 34455666778888899887542 333 57788999999987 89999999999999999986311 00
Q ss_pred eccccCCCCccccccccccEEEEEEec-CCCEEEEec-CCeEEEEECCCCCCc---eEEEeecccccccccccccCCCcc
Q 043890 322 FEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEYLRPKLCDLYENDSIF 396 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
+. ...-.|.+.|+++..-. ++.+|++.+ +|+|++||++. .++ +.++.+|...-..+
T Consensus 290 ~~--------a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l---------- 350 (425)
T KOG2695|consen 290 WC--------AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL---------- 350 (425)
T ss_pred cc--------eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc----------
Confidence 00 11123456788877655 566666654 69999999996 566 77888886543311
Q ss_pred ceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 397 DKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 397 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
-+-..+....+++++.|...+||.+++|.++. +++-..
T Consensus 351 ---~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~-tipf~~ 388 (425)
T KOG2695|consen 351 ---PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC-TIPFPY 388 (425)
T ss_pred ---ccccccccceEEEccCeeEEEEEecccCceee-ccCCCC
Confidence 34556778889999999999999999999887 665443
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.8e-07 Score=81.51 Aligned_cols=224 Identities=11% Similarity=0.082 Sum_probs=139.3
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-----------C
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----------K 301 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-----------d 301 (509)
-+-+.|||.|.+|++-.-.-|.+|--.+-..+. . ..| ..|.-+.|+|.. ++|++-+. .
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~--------R-F~H-p~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQ--------R-FYH-PGVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHH--------h-ccC-CCceeeecCCcc-ceEEEecCCccccCcccCCC
Confidence 356889999999999944458899766554332 2 224 357889999998 99998653 2
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccc
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
..++|||+++|.+ .+.|.....+. ..-.-+.||.|++|+|.-...+|.||+..+ ..++. ...-
T Consensus 282 ~~l~IWDI~tG~l----krsF~~~~~~~---------~~WP~frWS~DdKy~Arm~~~sisIyEtps-f~lld---~Ksl 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLL----KRSFPVIKSPY---------LKWPIFRWSHDDKYFARMTGNSISIYETPS-FMLLD---KKSL 344 (698)
T ss_pred ceEEEEEccccch----hcceeccCCCc---------cccceEEeccCCceeEEeccceEEEEecCc-eeeec---cccc
Confidence 5799999999985 34444321110 122346899999999987668999999875 33322 2111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS 456 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 456 (509)
.+. +|..+.|+|.+.+||.=... ..+.|-.+.+++.+. +-.-+.-..-.+-|..+++...+.
T Consensus 345 ki~------------gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iR-t~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 345 KIS------------GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIR-TKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CCc------------cccCcccCCCcceEEEEcccccCCcceEEEEecCccceee-eccceeeeccEEEeccCCcEEEEE
Confidence 111 12288999999999865432 367777777777766 555444444455555555442211
Q ss_pred ce-------------eeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 457 SI-------------TRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 457 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
-. ..+++ +..-++.-+.+..+..|..++|-|.|+.+++-+.
T Consensus 412 vdR~tK~~~~g~f~n~eIfr----ireKdIpve~velke~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFR----IREKDIPVEVVELKESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred EEeeccccccceEeeEEEEE----eeccCCCceeeecchheeeeeeccCCCeEEEEEc
Confidence 00 01111 0001122223345688999999999988886665
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=3.2e-07 Score=75.91 Aligned_cols=151 Identities=9% Similarity=0.055 Sum_probs=92.1
Q ss_pred EECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-----CCeEEEEECC
Q 043890 237 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDLR 310 (509)
Q Consensus 237 ~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-----dg~i~vwd~~ 310 (509)
+.+-.++-++++ .||.+.+++.+........ ....|.+. .+.++...+ +++.++.. -+..+.|+++
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~------i~~~~~~~-as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSR------IPSIHSGS-ASRKICRHG-NSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhhhhh------cccccccc-cccceeecc-cEEecCCcceEeeccceeeeccc
Confidence 334456678888 8999999998863222110 11112221 122222333 33433321 1234555555
Q ss_pred CCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE-ecC-CeEEEEECCCCCCceEEEeecccccccccc
Q 043890 311 QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
..+. +..... ....|.+++-+|..+.++. |++ |.+.+||.+....+...++.|...+.
T Consensus 168 p~~t-------~~~~~~---------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~---- 227 (319)
T KOG4714|consen 168 PIKT-------LIPSKK---------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW---- 227 (319)
T ss_pred cccc-------cccccc---------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh----
Confidence 4332 111110 0134889999997665555 554 99999999986667777888877655
Q ss_pred cccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 043890 389 LYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~ 426 (509)
.+-|+| ++..|+++++||.+.-||..+
T Consensus 228 -----------eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 228 -----------EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -----------heeccCCCchheeEecCCCcEEEEcCCC
Confidence 788998 567899999999999999874
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=2.7e-05 Score=66.09 Aligned_cols=232 Identities=15% Similarity=0.185 Sum_probs=124.7
Q ss_pred EEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCccc
Q 043890 236 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALC 315 (509)
Q Consensus 236 i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 315 (509)
++.+.+|++||.-.|..|.|-..+..-... .-+..........=+.++|+||+ .+||.+...|+|++||+....+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si---~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l- 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSI---IGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL- 77 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchhe---eEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee-
Confidence 567789999999888888876655432111 00111122223345789999998 9999999999999999987653
Q ss_pred CCceeeeccccCCCCccccccccccEEEEEEecCC-------CEEEEecCCeEEEEECCC----CCCceEEEeecccccc
Q 043890 316 DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-------RHILSRDYMTLKLWDINM----DSGPVATFQVHEYLRP 384 (509)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~s~~~~~i~iwd~~~----~~~~~~~~~~~~~~~~ 384 (509)
..+..... ........|..+.|.+-. ++|+..-.|.++=|-+.. ..+....+.......
T Consensus 78 ----f~I~p~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp- 147 (282)
T PF15492_consen 78 ----FVIPPAMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP- 147 (282)
T ss_pred ----EEcCcccc-----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC-
Confidence 33332210 111223567777776522 344443336666554421 122233333211111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCC-----------cEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCC
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-----------LFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSR 453 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 453 (509)
..|.++.++|..++|+.|+... -+.-|.+-++.+-.+....-...+.. ++...
T Consensus 148 -----------~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~---~~~~~-- 211 (282)
T PF15492_consen 148 -----------HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITA---SSKRR-- 211 (282)
T ss_pred -----------CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccc---ccccc--
Confidence 1233899999999888776421 35556655444433111111111100 00000
Q ss_pred cccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 454 SLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+..+... ..+..........|..|+.|||+..||+..- |.+.+|.
T Consensus 212 ---~~~~~~~-------~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 212 ---GLLRIPS-------FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ---ceeeccc-------eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 0000000 0000000012467999999999999997776 9999996
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=2.6e-06 Score=71.01 Aligned_cols=175 Identities=10% Similarity=0.007 Sum_probs=111.2
Q ss_pred CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCce
Q 043890 241 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA 319 (509)
Q Consensus 241 ~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 319 (509)
...+|+.| ..|...+|...+.+....+. ..|...|+-+.=.-+...-+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---- 151 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence 34578888 89999999998766544332 2222222111100111134666788888888888765421
Q ss_pred eeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccce
Q 043890 320 ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDK 398 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (509)
+..+.. .-.+.++.+++|++++++-+| ..|..|.+....+.+......... +.-
T Consensus 152 --~~~h~~----------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~g--- 206 (344)
T KOG4532|consen 152 --FAVHNQ----------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DHG--- 206 (344)
T ss_pred --ceeecc----------ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CCc---
Confidence 111110 013788999999999999776 999999998644443332211110 111
Q ss_pred eeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee----eeeccCCCceeEEEEcCCCC
Q 043890 399 FECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA----TTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 399 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~ 451 (509)
|+..|+.....+|++..||++.|||++....+. ..-..|.+.++.+.|++-+.
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 278899999999999999999999998543322 13345788888888888444
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.2e-08 Score=98.13 Aligned_cols=215 Identities=13% Similarity=0.249 Sum_probs=145.0
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
.|....+|++|+-+.++|+.|+..|.|++|++.++.. .....+|.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~------------ 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ------------ 1143 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc------------
Confidence 4788999999999999999999999999999999987 56777887
Q ss_pred ccceeeEEEEcCCCceEEEeeCCC--eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 118 EKINKIRWCQTANGALFLLSTNDK--TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|+-+.- +.+|..+++.+.-. ...+|++.+.-
T Consensus 1144 SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~------------------------------------------- 1178 (1516)
T KOG1832|consen 1144 SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG------------------------------------------- 1178 (1516)
T ss_pred cccccccc--cCCcceeeeeccccCchHHHhcccccc-------------------------------------------
Confidence 77888886 88888877765432 45677765310
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccc-cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
...|. ..-.++.|+...+.-+.| ......+||+++...+.++. .
T Consensus 1179 ------------------------------~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl----t 1224 (1516)
T KOG1832|consen 1179 ------------------------------GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL----T 1224 (1516)
T ss_pred ------------------------------CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc----C
Confidence 01122 224467787665555555 55578899999987655422 1
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
...+.+..-+...|+|+. .+++ .|| .+||.+..+. ++.|+.-. ---.-.|+|+|.-+
T Consensus 1225 ~~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft-------------~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFT-------------DYGGGGFHPSGNEV 1281 (1516)
T ss_pred cchhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhe-------------ecccccccCCCceE
Confidence 112223333678899997 5554 455 6899998753 45554332 11123599999988
Q ss_pred EEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEE
Q 043890 354 LSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA 411 (509)
Q Consensus 354 ~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 411 (509)
+.-+ .|||+++ .+.++....-... .+.|+..|..++
T Consensus 1282 IINS----EIwD~RT-F~lLh~VP~Ldqc-----------------~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1282 IINS----EIWDMRT-FKLLHSVPSLDQC-----------------AVTFNSTGDVMY 1317 (1516)
T ss_pred Eeec----hhhhhHH-HHHHhcCccccce-----------------EEEeccCccchh
Confidence 8765 4999998 5665554443322 677877777655
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.6e-07 Score=82.34 Aligned_cols=246 Identities=16% Similarity=0.146 Sum_probs=140.1
Q ss_pred cccccCeEEEEECCCCCEEEEE-c-CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCC-cEEEEE-EcCC
Q 043890 227 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYS-SSKG 302 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~l~~~-~~dg 302 (509)
..|...+.+++.+-++.++.+. . |..++++|++.-...--+ .+......+ +...++... ..++++ -.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi------KL~~lPg~a-~wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI------KLVDLPGFA-EWVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc------ccccCCCce-EEecCCCCeeeeEEeecccCC
Confidence 6788888899999999999997 5 999999999875533111 111111211 122222211 133333 3578
Q ss_pred eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCC-CceEEEeecc
Q 043890 303 SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDS-GPVATFQVHE 380 (509)
Q Consensus 303 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~-~~~~~~~~~~ 380 (509)
.+.++|-...... ...+. .-|..+|..+.+.|-+..+++.+. |.|.-|...... .+-..+...-
T Consensus 123 ~i~VvD~~~d~~q---~~~fk-----------klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQ---DGYFK-----------KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred CcEEECCcCCcCc---cceec-----------ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 9999997765421 11111 124579999999999999998864 999999887211 1111010000
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceee
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITR 460 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 460 (509)
..-+.+..+-..+.. ..++.|+|++..+.+-+.|..|++++.++|+.++ .++..........-+|-+-.. +
T Consensus 189 K~eTdLy~f~K~Kt~--pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq-eiDE~~t~~~~q~ks~y~l~~----V-- 259 (558)
T KOG0882|consen 189 KHETDLYGFPKAKTE--PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ-EIDEVLTDAQYQPKSPYGLMH----V-- 259 (558)
T ss_pred cccchhhcccccccC--ccceEEccccCcccccCcccEEEEEEeccchhhh-hhhccchhhhhccccccccce----e--
Confidence 000001111111111 2289999999999999999999999999998887 665433222111111111000 0
Q ss_pred EeecCCCCCc-ccCCCccccc-ccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 461 VVRRGSDVPG-VDTNGNSFDF-TTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 461 ~~~~~~~~~~-~~~~~~~~~~-~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
.+ +..+.. -++. .+ ...-..+.|...+++|..++-=+|.|++
T Consensus 260 el--gRRmaverele----k~~~~~~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 260 EL--GRRMAVERELE----KHGSTVGTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred eh--hhhhhHHhhHh----hhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence 00 000000 0000 01 1234678899999999999887777765
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.68 E-value=1.2e-05 Score=70.82 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=84.3
Q ss_pred CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCcee
Q 043890 242 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAI 320 (509)
Q Consensus 242 ~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 320 (509)
+..++++ .++.++.+|..+++...+..... ..... ..........+ ..++.+..++.|..+|+++++..+
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w---- 146 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW---- 146 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE----
T ss_pred ccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEE----
Confidence 3344444 77799999988888765521110 01111 11122222224 678888889999999999998632
Q ss_pred eeccccCCCCccccccccccEEEEEEecCCCEEEEecCCe-EEEEECCCCCCceEEEeecccccccccccccCCCcccee
Q 043890 321 LFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT-LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (509)
............ +. ....+..-....++..+++..++. +.+ |+.+ ++.+-... ....
T Consensus 147 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~----------------- 204 (238)
T PF13360_consen 147 KYPVGEPRGSSP-IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI----------------- 204 (238)
T ss_dssp EEESSTT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E-----------------
T ss_pred EeecCCCCCCcc-ee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc-----------------
Confidence 222211000000 00 001122222333454444444564 555 9987 44332222 1110
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
......++..|+.++.++.|..||+.+|+.+
T Consensus 205 ~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 205 YSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred cCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 1224567888888889999999999999865
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=4.2e-05 Score=66.99 Aligned_cols=221 Identities=16% Similarity=0.210 Sum_probs=122.8
Q ss_pred ceEEEEECC-CCCeEEeecCCCe-EEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 42 IISAIEFDK-TGDHLATGDRGGR-VVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 42 ~I~~v~~s~-~~~~la~g~~dg~-i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
.-..++.+| .+..+|.+-.-|. ..+||..+++.. ..+... .-..|.||-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-~~~~a~--------------~gRHFyGHg-------------- 56 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-QRLWAP--------------PGRHFYGHG-------------- 56 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-eEEcCC--------------CCCEEecCE--------------
Confidence 346688889 5677888877664 778999888761 111000 023445553
Q ss_pred ceeeEEEEcCCCceEEEeeC-----CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 120 INKIRWCQTANGALFLLSTN-----DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
.| ++||++|++.-. .|.|-|||...+ ..++-+
T Consensus 57 ----~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E------------------------------------ 93 (305)
T PF07433_consen 57 ----VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGE------------------------------------ 93 (305)
T ss_pred ----EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeE------------------------------------
Confidence 45 999999998743 589999999832 111100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEc--------CCeEEEEEccCCCceee
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISAD--------DLRINLWNLEISNQSFN 266 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------dg~i~iwd~~~~~~~~~ 266 (509)
+..|.-.-..+.+.|+|+.|+++. .|..++ ++.+.+..+.
T Consensus 94 -------------------------------~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~ 141 (305)
T PF07433_consen 94 -------------------------------FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLV 141 (305)
T ss_pred -------------------------------ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceE
Confidence 122222233466778887776651 122222 2222222222
Q ss_pred Eeec------cCCcc--CCCccceEEEEEeCCCCcEEEEEEcCCe-------EEEEECCCCcccCCceeeeccccCCCCc
Q 043890 267 IVDV------KPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGS-------IRLIDLRQSALCDSHAILFEEQEAPGSR 331 (509)
Q Consensus 267 ~~~~------~~~~~--~~~~~~i~~l~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
+++. ....+ .-|...|..+++.++| ..++..-..|. |-+++.... +..+....
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~------~~~~~~p~----- 209 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA------LRLLPAPE----- 209 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc------ceeccCCh-----
Confidence 2110 11133 3477889999999998 54444333321 333332221 11111111
Q ss_pred cccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeec
Q 043890 332 SFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~ 379 (509)
.........+-++++++++.++++.+ .+.+.+||..+ ++.+......
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~ 258 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLP 258 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccC
Confidence 00112236899999999999887765 39999999997 6666555443
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.1e-05 Score=75.31 Aligned_cols=120 Identities=11% Similarity=0.091 Sum_probs=78.6
Q ss_pred cccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 229 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
...++.+++++.+-+.+|+| .+|.|..+.-+-.+.... +..-......+|+++.+..++ ..++-...-..|.+|
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs----r~~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y 198 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS----RQDYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLY 198 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc----ceeeeccCCCCceeeEEecCC-ceeEEEEecceeEEE
Confidence 35678899999999999999 999999985432211100 111223347899999999998 442223334568999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCC
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINM 368 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 368 (509)
.+..... .... +..|..+++|..+++...-+++++...+.+||...
T Consensus 199 ~l~gr~p---~~~~------------ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 199 SLSGRTP---SLKV------------LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred EecCCCc---ceee------------eccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 8884331 0122 23344678888888755546666668899999884
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=2e-05 Score=74.65 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=79.1
Q ss_pred CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCcee
Q 043890 242 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAI 320 (509)
Q Consensus 242 ~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 320 (509)
+..++++ .+|.++.||.++++..... ... ....+.. .+ ..++.++.+|.+..+|..+++..++..
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~------~~~----~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~~- 306 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKR------DAS----SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKND- 306 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEee------ccC----CccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEccc-
Confidence 3455555 8899999999988754432 111 1112222 23 567777889999999999887532210
Q ss_pred eeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCcccee
Q 043890 321 LFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (509)
.+.. ....+... .+..+++++ +|.++++|..+ ++.+..+..+......
T Consensus 307 ~~~~--------------~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~~-------------- 355 (377)
T TIGR03300 307 ELKY--------------RQLTAPAV--VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIAS-------------- 355 (377)
T ss_pred cccC--------------CccccCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcccc--------------
Confidence 0000 01111122 345666654 59999999986 6777776654422110
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEE
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
...+ .+ +.|+.++.||.|+.|
T Consensus 356 sp~~-~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVV-VG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEE-EC-CEEEEEeCCceEEEe
Confidence 2223 23 357789999999876
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=1.4e-07 Score=55.92 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=31.0
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEE
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFE 68 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~ 68 (509)
+.+|.+.|.+++|+|++++||+|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356999999999999999999999999999997
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=1.5e-06 Score=84.52 Aligned_cols=144 Identities=12% Similarity=0.071 Sum_probs=97.0
Q ss_pred CCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc---------CCeEEEEEC
Q 043890 240 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDL 309 (509)
Q Consensus 240 ~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~---------dg~i~vwd~ 309 (509)
.+++++.+| ..|+|.+-|.++.+.. .++..|++.|..+.. .| +.|++++. |..|+|||+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~i--------ht~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETI--------HTFDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCcee--------eeeeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhh
Confidence 467889999 8999999999987644 367889999987655 45 78888875 456899999
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC--CEEEEecCCeEEEEECCCCCCc-eEEEeecccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG--RHILSRDYMTLKLWDINMDSGP-VATFQVHEYLRPKL 386 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~ 386 (509)
|+.+.. ..+.-+ ....-+.|+|.- +..++...|...+-|..+-..+ ...+..+.....
T Consensus 254 Rmmral----~PI~~~-------------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~-- 314 (1118)
T KOG1275|consen 254 RMMRAL----SPIQFP-------------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG-- 314 (1118)
T ss_pred hhhhcc----CCcccc-------------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc--
Confidence 987642 111111 122446677743 3333344599999994432222 222222221100
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
+..+++|++++.||.|..+|.|.+|.-
T Consensus 315 -----------i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 315 -----------ISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -----------ceeEEecCCCceEEEecccCcEeeecC
Confidence 228999999999999999999999973
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=79.78 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=94.8
Q ss_pred cccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC-CCCcEEEEEEcCCeEEE
Q 043890 229 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRL 306 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~v 306 (509)
....|.++.|...++++..| .+|.|..+|++...+--. .+....-|...|+++..-. ++ ++|++++.+|+|++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvtslq~Lq~s~-q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVTSLQILQFSQ-QKLMASDMTGKIKL 325 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchhhhhhhcccc-ceEeeccCcCceeE
Confidence 44668888898889999999 999999999997521100 0112334889999998877 55 89999999999999
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecc
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
||++..+ +...++.+++|.... .-.-+-..+....++++ +|-..+||.++. +.++.+++...
T Consensus 326 yD~R~~K-~~~~V~qYeGHvN~~----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 326 YDLRATK-CKKSVMQYEGHVNLS----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred eeehhhh-cccceeeeecccccc----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 9999876 333466677664221 11122344555566665 569999999996 77777766543
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.8e-05 Score=69.95 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=57.4
Q ss_pred ccceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 118 EKINKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.+|+| +|..+ ++..++.+..|+|.|+++......
T Consensus 194 ~~Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~~~vss---------------------------------------- 231 (463)
T KOG1645|consen 194 SFIRDLAF--SPFNEGLLGLASLGNKIKIMDLETSCVVSS---------------------------------------- 231 (463)
T ss_pred hhhhhhcc--CccccceeeeeccCceEEEEecccceeeeh----------------------------------------
Confidence 67999999 66665 788899999999999998654322
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 263 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~ 263 (509)
+ ..+ ..+++++|.-+. +++..| .+|.|.+||++..+.
T Consensus 232 ----------------------------y-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 232 ----------------------------Y-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ----------------------------e-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 1 233 568999998775 456667 899999999997664
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=4.6e-07 Score=53.72 Aligned_cols=37 Identities=30% Similarity=0.719 Sum_probs=34.1
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEe
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWK 147 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd 147 (509)
....+.+|. +.|++|+| +|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence 467889998 88999999 89999999999999999997
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.43 E-value=4.9e-05 Score=66.62 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred ccccCeEEEEECCCCCEEEEE-cCCe-------EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE
Q 043890 228 AHDYHINSISNNSDGETFISA-DDLR-------INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 299 (509)
Q Consensus 228 ~~~~~v~~i~~~~~~~~l~~~-~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~ 299 (509)
-|.-.++-+++.++|..++.. ..|. |-+++.. +. +................+-+|++++++..+.+|+=
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Cc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 356678899999998777665 3222 2233222 21 22222222223445678999999999833445555
Q ss_pred cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEE
Q 043890 300 SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWD 365 (509)
Q Consensus 300 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd 365 (509)
..+.+.+||..++.+. ..... ..+..++-.+++ ++++.+.|.+...+
T Consensus 237 rGg~~~~~d~~tg~~~----~~~~l--------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLL----GSVPL--------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCEEEEEECCCCCEe----ecccc--------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 7889999999999852 22221 246677777766 67766556544333
No 312
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.38 E-value=0.00034 Score=65.39 Aligned_cols=256 Identities=9% Similarity=0.022 Sum_probs=121.4
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhh-hhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKK-IADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
.|+.+.| .++...|+++...|.|.||.+...+... .......+..+. .+...
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~-------------~~~~~------------ 55 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFR-------------RFSLN------------ 55 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE-------------------------------S--GG------------
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccc-------------ccccc------------
Confidence 3888998 7887899999999999999987654322 000000000000 00000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC-cc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NM 275 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~ 275 (509)
......+.+-+......+.--.+. .++....++|++++.+ +=.+++.| .+|.+.|.|+|...-++.. .+... .-
T Consensus 56 -~~~~~l~di~~r~~~~~~~gf~P~-~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~ 131 (395)
T PF08596_consen 56 -NSPGKLTDISDRAPPSLKEGFLPL-TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLS 131 (395)
T ss_dssp -GSS-SEEE-GGG--TT-SEEEEEE-EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-
T ss_pred -CCCcceEEehhhCCcccccccCch-hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccc
Confidence 000001111111111111111111 1235557899999997 44588999 8999999999876655442 11110 11
Q ss_pred CCCccceEEEEEeC-----CC--CcEEEEEEcCCeEEEEECCC-CcccCCceeeeccccCCCCccccccccccEEEEE-E
Q 043890 276 EDLTEVITSAEFHP-----TH--CNMLAYSSSKGSIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASISDIK-F 346 (509)
Q Consensus 276 ~~~~~~i~~l~~~~-----~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 346 (509)
......|+++.|.- |+ .-++++|...|.+.+|.+.- ..... .-.+.... ..+.+.|..+. +
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f--~v~~~~~~--------~~~~~~i~~I~~i 201 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRF--SVQFAGAT--------TNHDSPILSIIPI 201 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-E--EEEEEEEE----------SS----EEEEE
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCce--EEEEeecc--------ccCCCceEEEEEE
Confidence 22456788888872 11 14788999999999998752 11100 00111100 11123333333 2
Q ss_pred ecC---------------------CCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEE--
Q 043890 347 AKD---------------------GRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCL-- 403 (509)
Q Consensus 347 s~~---------------------~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 403 (509)
+.+ ..+++.+++..++++...+ .+............. .+++
T Consensus 202 ~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~---------------~~~vv~ 265 (395)
T PF08596_consen 202 NADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCS---------------SASVVP 265 (395)
T ss_dssp ETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEE---------------EEEEEE
T ss_pred ECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeeccccccc---------------eEEEEe
Confidence 211 1266667789999999886 343332221111100 3334
Q ss_pred ---cCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 404 ---SGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 404 ---s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
...+..|++-..+|.|++|.+..-+.+.
T Consensus 266 ~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 266 TISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred ecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 2356778888999999999999877766
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=4.7e-07 Score=87.55 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=131.5
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+...-++++| +.+.+.|+.|+..|.|+++++.+|.....
T Consensus 1100 ~~~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s--------------------------------------- 1138 (1516)
T KOG1832|consen 1100 ETALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES--------------------------------------- 1138 (1516)
T ss_pred cccceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc---------------------------------------
Confidence 3477899999 88999999999999999999998863321
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE---cCCeEEEEEccCCCceeeEeeccC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
...|..+|+-+.-+.+|..+++. +.--..+|++.......
T Consensus 1139 ------------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~------- 1181 (1516)
T KOG1832|consen 1139 ------------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR------- 1181 (1516)
T ss_pred ------------------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCcc-------
Confidence 27788899999888898887765 23357789987633211
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
..+. .-.++.|+..- ..-+.|.......+||+.++..+........... -.-+...|+|+.++
T Consensus 1182 Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~------------y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1182 HSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS------------YSNNLAHFSPCDTL 1244 (1516)
T ss_pred cccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhh------------hhccccccCCCcce
Confidence 1222 23467888764 5556666667799999999875422111111110 12366789999888
Q ss_pred EEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
++--+ .+||++. ...++.|..-.... .-.|+|.|..++.-+ .|||+++-+.+.
T Consensus 1245 IlndG----vLWDvR~-~~aIh~FD~ft~~~----------------~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1245 ILNDG----VLWDVRI-PEAIHRFDQFTDYG----------------GGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred EeeCc----eeeeecc-HHHHhhhhhheecc----------------cccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 87522 4899997 35555544322111 346999999888765 379998766654
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.0001 Score=70.26 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=108.1
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|...|.--+++..+++++.|+.-|.+++|+...++.. .....+-. +
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------~ 77 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------G 77 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------c
Confidence 5666776777889999999999999999999887650 11111111 3
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.+..+.. +++..++|.|+..|.|.++.++.+.......
T Consensus 78 ~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~---------------------------------------- 115 (726)
T KOG3621|consen 78 ITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDY---------------------------------------- 115 (726)
T ss_pred eEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCccee----------------------------------------
Confidence 3445555 7888788888999999999987632111100
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
....-..|...|++++|++++..+.+| +.|.|.+-.+... ... ..+...+..
T Consensus 116 -----------------------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~---~~~~q~il~ 168 (726)
T KOG3621|consen 116 -----------------------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAF---LSKSQEILS 168 (726)
T ss_pred -----------------------eccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhh---ccccceeec
Confidence 000114478889999999999999999 8999999888762 111 012234444
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
..+.|..+.+... .+|++.... -.+++.+.+
T Consensus 169 ~ds~IVQlD~~q~--~LLVStl~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 169 EDSEIVQLDYLQS--YLLVSTLTR--CILCQTEAE 199 (726)
T ss_pred cCcceEEeecccc--eehHhhhhh--hheeecchh
Confidence 5677877777653 344443332 234454443
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.1e-05 Score=75.82 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=98.8
Q ss_pred CCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC----CCcEEEEEEcCCeEEEEECCCCc
Q 043890 239 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 239 ~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~~l~~~~~dg~i~vwd~~~~~ 313 (509)
..+|.++++| .||.|.|-.+-+.+.... .....++.+++++|+ ..+.+++|+..| +.++.-+--.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCcccee---------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 5679999999 999999998887664321 224578999999998 236899999988 7777543322
Q ss_pred ccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCC
Q 043890 314 LCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEND 393 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
.. ... .+.+-.++|.++.|. |.++|-++|-.|++||+.+ ++.+..+......+.. +.+
T Consensus 150 nk----~~v----------~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R~--e~f--- 207 (846)
T KOG2066|consen 150 NK----DSV----------VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVRP--ELF--- 207 (846)
T ss_pred Cc----cce----------eeecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCCc--ccC---
Confidence 10 011 122234799999996 7899999987799999997 4555444433222110 111
Q ss_pred CccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 394 SIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 394 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
. ..+.|.++.++ +.|- ..+|+|..++
T Consensus 208 --p--phl~W~~~~~L-VIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 208 --P--PHLHWQDEDRL-VIGW-GDSVKICSIK 233 (846)
T ss_pred --C--CceEecCCCeE-EEec-CCeEEEEEEe
Confidence 1 16788776654 4344 4488888887
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.31 E-value=0.0002 Score=66.89 Aligned_cols=225 Identities=8% Similarity=0.051 Sum_probs=100.9
Q ss_pred EEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 234 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
..+-|+||+++|+.. ++..|..+.+...... ...--.+..+.+-.-| .--. .-.+.|+|+.+
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-----------~~~yp~~~~~~YPk~G-~~np----~v~l~v~~~~~ 167 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-----------DSQYPEVESIRYPKAG-DPNP----RVSLFVVDLAS 167 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-----------TESS-EEEEEE--BTT-S-------EEEEEEEESSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCc-----------cccCCcccccccCCCC-CcCC----ceEEEEEECCC
Confidence 357899999999987 6777776655432110 0001133444443333 1111 12467789888
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EEEEe-c---C-CeEEEEECCCCCCceEEE-eecccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HILSR-D---Y-MTLKLWDINMDSGPVATF-QVHEYLRP 384 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~-~---~-~~i~iwd~~~~~~~~~~~-~~~~~~~~ 384 (509)
++.. .+.... ....-...+..+.|.++++ +++.- + . ..+.++|..+ +...... .....++.
T Consensus 168 ~~~~-----~~~~~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 168 GKTT-----ELDPPN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVD 235 (353)
T ss_dssp TCCC-----EE---H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSS
T ss_pred CcEE-----Eeeecc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEecCCccee
Confidence 7631 111110 0000125789999999999 44432 2 2 4567778876 3332222 22333321
Q ss_pred cccccccCCCccceeeEEEc-CCCC-EEEEeeCCCc--EEEEeCCCCceeeeeeccCCCceeE-EEEcCCCCCCccccee
Q 043890 385 KLCDLYENDSIFDKFECCLS-GDGL-RVATGSYSNL--FRVFGCAPGSTEATTLEASKNPMRR-QVQTPSRPSRSLSSIT 459 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s-~~~~-~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~~~~~~ 459 (509)
.. . ...|. +++. +|.....||. |++++...+... .+....-.|.. +.+.+.+...-.....
T Consensus 236 ~~---------~---~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~--~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 236 VY---------D---PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR--QLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SS---------S---EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE--ESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred ee---------c---ccccccCCCCEEEEEEEcCCCcEEEEEccccccee--ccccCceeecccceEcCCCCEEEEEecC
Confidence 10 0 44554 5554 4445556774 555566655433 44444444533 4445544321000000
Q ss_pred eEeecCCCCCcccCC-Cccc---ccccce-EEEEEcCCCcEEEEEec
Q 043890 460 RVVRRGSDVPGVDTN-GNSF---DFTTKL-LHLAWHPTENSIACAAA 501 (509)
Q Consensus 460 ~~~~~~~~~~~~~~~-~~~~---~~~~~i-~~~~~~p~~~~la~~~~ 501 (509)
.-....++...++. +... -..... ..++|||++++++....
T Consensus 302 -~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 302 -DNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -GGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred -CCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 00011122223333 2211 111222 58999999999886544
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.26 E-value=0.0013 Score=62.78 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=60.1
Q ss_pred cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCc
Q 043890 293 NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGP 372 (509)
Q Consensus 293 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~ 372 (509)
..++.++.+|.+..+|+.+++..++ ... .....+.. .+++.++...++.+..+|..+ ++.
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~------~~~------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~t-G~~ 316 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWK------REY------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRG-GVE 316 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEe------ecC------------CCccCcEE-ECCEEEEEcCCCeEEEEECCC-CcE
Confidence 4566677899999999999875332 110 01111222 133444444569999999986 443
Q ss_pred eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 373 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+-.......... . .... .+.+|+.++.||.|+..|..+|+.+.
T Consensus 317 ~W~~~~~~~~~~-----------~---sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 317 LWSQSDLLHRLL-----------T---APVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEcccccCCCcc-----------c---CCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 322111000000 0 1122 25567889999999999999998776
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00039 Score=68.00 Aligned_cols=167 Identities=10% Similarity=0.137 Sum_probs=99.3
Q ss_pred CCCCEEEE-E-cCC----eEEEEEccCCC-----ceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 240 SDGETFIS-A-DDL----RINLWNLEISN-----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 240 ~~~~~l~~-~-~dg----~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
.+.++|++ | +++ .+++|+++..+ ..+....+-+........++.+++.+.+- +.+|.|-.+|.|..+.
T Consensus 75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYK 153 (933)
T ss_pred cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEc
Confidence 33345555 3 444 69999997542 11111111111223356788999999997 9999999999999884
Q ss_pred --CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE-EEEecCCeEEEEECCCCCCc-eEEEeecccccc
Q 043890 309 --LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH-ILSRDYMTLKLWDINMDSGP-VATFQVHEYLRP 384 (509)
Q Consensus 309 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~ 384 (509)
+...+. .+.-..+. -..+|+.+++..+++. +++++-..|.+|.+.. ..+ ...+..+.....
T Consensus 154 GDi~RDrg----sr~~~~~~----------~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~ln 218 (933)
T KOG2114|consen 154 GDILRDRG----SRQDYSHR----------GKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLN 218 (933)
T ss_pred Ccchhccc----cceeeecc----------CCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccce
Confidence 211110 11111111 1268999999999887 4445558899999985 333 333554544332
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec-cCCC
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE-ASKN 439 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~ 439 (509)
+..+++....+++++ +..+++|+.+....-. .+. +|..
T Consensus 219 ---------------Css~~~~t~qfIca~-~e~l~fY~sd~~~~cf-af~~g~kk 257 (933)
T KOG2114|consen 219 ---------------CSSFSDGTYQFICAG-SEFLYFYDSDGRGPCF-AFEVGEKK 257 (933)
T ss_pred ---------------eeecCCCCccEEEec-CceEEEEcCCCcceee-eecCCCeE
Confidence 666665444355444 4579999988444333 676 6653
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00015 Score=64.39 Aligned_cols=80 Identities=9% Similarity=0.189 Sum_probs=64.0
Q ss_pred ceecccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 36 EVQEVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
+..|...|..++|||..+ +|..++.+..|+|.|+++... ...+..|.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------------vssy~a~~--------- 236 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------------VSSYIAYN--------- 236 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------------eeheeccC---------
Confidence 445889999999999876 788899999999999998876 56666664
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK 152 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 152 (509)
.+.+.+|+. .+..+|..|-.+|.|.|||++..+
T Consensus 237 ----~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 237 ----QIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ----Cceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence 599999942 234567777789999999998654
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.21 E-value=3.6e-05 Score=75.30 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=80.0
Q ss_pred ecccccCeEEEEECCCCCEEEEE--c--------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEE
Q 043890 226 AHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 295 (509)
Q Consensus 226 ~~~~~~~v~~i~~~~~~~~l~~~--~--------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l 295 (509)
+..|++.+.++. -.|++|+++ + |.-|+|||++..+.+.. +.-+.++ .-+.|+|.-...+
T Consensus 213 ~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 213 FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred eeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCC--------cccccCc-hhhhhcccccceE
Confidence 377888887655 467788765 2 56688999998765432 1222222 4578888877899
Q ss_pred EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECC
Q 043890 296 AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDIN 367 (509)
Q Consensus 296 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~ 367 (509)
++++..|...+-|..+-..-...++.+... .+.+..+++++++..|+.|+ +|.|.+|.-+
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~------------~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPN------------GSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccC------------CCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 999999999999943321100001222211 14599999999999999997 4999999733
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=8.9e-05 Score=72.04 Aligned_cols=108 Identities=12% Similarity=0.278 Sum_probs=80.0
Q ss_pred EEEEECCCCCeEEeecC----CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 44 SAIEFDKTGDHLATGDR----GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~----dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
+-.+|+|...++|+++- .|.|.||- +++++ .+ -.++. -.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEP-qr--------------------~Vt~P---------------~h 61 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEP-QR--------------------DVTYP---------------VH 61 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCC-Cc--------------------ccccc---------------ee
Confidence 34578999999888763 58888884 33333 00 01111 23
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
+++++| +|..-.|+.|-.-|.+.+|...+.+...+
T Consensus 62 atSLCW--Hpe~~vLa~gwe~g~~~v~~~~~~e~htv------------------------------------------- 96 (1416)
T KOG3617|consen 62 ATSLCW--HPEEFVLAQGWEMGVSDVQKTNTTETHTV------------------------------------------- 96 (1416)
T ss_pred hhhhcc--ChHHHHHhhccccceeEEEecCCceeeee-------------------------------------------
Confidence 677999 88887888888899999999876653221
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEcc
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 259 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~ 259 (509)
...|..++..+.|+++|..|+++ .-|.|.+|...
T Consensus 97 --------------------------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 --------------------------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------------------------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 26688899999999999999999 88999999876
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=0.00012 Score=68.63 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=82.9
Q ss_pred EEEEEeCCCCcEEEEEEc----CCe----EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 283 TSAEFHPTHCNMLAYSSS----KGS----IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 283 ~~l~~~~~~~~~l~~~~~----dg~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.++.|+-..++.+.+... +|. -.+|++..+++....+..+.. .+.+.+++++|+...|+
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL-------------~s~v~~ca~sp~E~kLv 275 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPL-------------PSQVICCARSPSEDKLV 275 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEec-------------CCcceEEecCcccceEE
Confidence 466666544455554332 332 456777655532212222222 25899999999988888
Q ss_pred Ee-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeee
Q 043890 355 SR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 355 s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 433 (509)
.| .||+|.+||.... +..+....-.. +.++|+|+|..+++|+..|.+.+||+.-.....+.
T Consensus 276 lGC~DgSiiLyD~~~~---~t~~~ka~~~P---------------~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRG---VTLLAKAEFIP---------------TLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred EEecCCeEEEEEcCCC---eeeeeeecccc---------------eEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 76 5899999998752 22222211111 27999999999999999999999999754433323
Q ss_pred eccCCCceeEEEEc
Q 043890 434 LEASKNPMRRQVQT 447 (509)
Q Consensus 434 ~~~~~~~v~~~~~s 447 (509)
+.....|-..+.++
T Consensus 338 lsEd~~P~~~L~Ls 351 (545)
T PF11768_consen 338 LSEDATPKSTLQLS 351 (545)
T ss_pred ccccCCCccEEeee
Confidence 43444444444444
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.17 E-value=0.00029 Score=71.55 Aligned_cols=237 Identities=13% Similarity=0.134 Sum_probs=123.3
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
..|.++.|..+.+-++.+ ..|.|.+-|..+.... ....-...|.+++|+||+ .+++..+..+++.+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e---------ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE---------IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee---------eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec
Confidence 579999999988888888 8999999988765421 223346789999999998 89988888777766442
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDL 389 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 389 (509)
.-. .+.+ +.+...... .+....+-|-.... -+-|+.|.....+.....+.......+.+.
T Consensus 139 ~f~-~i~E--~~L~~d~~~---------~sk~v~VGwGrkeT-qfrgs~gr~~~~~~~~~ek~~~~~~~~~~~------- 198 (1265)
T KOG1920|consen 139 DFE-PIAE--KPLDADDER---------KSKFVNVGWGRKET-QFRGSEGRQAARQKIEKEKALEQIEQDDHK------- 198 (1265)
T ss_pred ccc-chhc--ccccccccc---------ccccceecccccce-eeecchhhhcccccccccccccchhhccCC-------
Confidence 211 1000 001000000 01122222322111 111111222222221111111111111111
Q ss_pred ccCCCccceeeEEEcCCCCEEEEe-----eCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcc-----ccee
Q 043890 390 YENDSIFDKFECCLSGDGLRVATG-----SYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSL-----SSIT 459 (509)
Q Consensus 390 ~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~-----~~~~ 459 (509)
+.++|--||+++|+. .....|++||-+ |.+-. +-+...+--.+++|-|+|..... +...
T Consensus 199 ---------~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 199 ---------TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred ---------ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 179999999999973 223799999987 54433 33333344456777776654110 0001
Q ss_pred eEeecCCCCCcccCCCccccc-ccceEEEEEcCCCcEEEE---EecCc-eEEEeC
Q 043890 460 RVVRRGSDVPGVDTNGNSFDF-TTKLLHLAWHPTENSIAC---AAANS-LYMYYA 509 (509)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~la~---~~~~~-i~v~~~ 509 (509)
..+.+.+.+......- ...- ..++..++|+.++..||+ ...+. +++|.+
T Consensus 268 IvffErNGL~hg~f~l-~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVL-PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred EEEEecCCcccccccc-CCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 1111111111000000 0001 234899999999999998 44444 999863
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=4.6e-07 Score=84.55 Aligned_cols=166 Identities=15% Similarity=0.182 Sum_probs=108.3
Q ss_pred cccccCeEEEEECC-CCCEEEEE-c----CCeEEEEEccCCCceeeEeeccCCccCC-CccceEEEEEeCCCCcEEEEEE
Q 043890 227 HAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSS 299 (509)
Q Consensus 227 ~~~~~~v~~i~~~~-~~~~l~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~~~ 299 (509)
.++....++++|++ |.+.||.| + |..+.|||+.+.-.... ....+.+ ......+++|..+. +++.+|.
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk----e~~~fs~~~l~gqns~cwlrd~-klvlaGm 173 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK----ESPLFSSSTLDGQNSVCWLRDT-KLVLAGM 173 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc----cccccccccccCccccccccCc-chhhccc
Confidence 66777899999987 56788887 4 78899999987522100 0012222 33455688999776 8999999
Q ss_pred cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEEecCCeEEEEE-CCCCCCceEEEe
Q 043890 300 SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRDYMTLKLWD-INMDSGPVATFQ 377 (509)
Q Consensus 300 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd-~~~~~~~~~~~~ 377 (509)
....++++|++..... ...+.. ..+..+..+| .+.++++-.++.|.+|| .++-..++..+.
T Consensus 174 ~sr~~~ifdlRqs~~~---~~svnT--------------k~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDS---VSSVNT--------------KYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred ccchhhhhhhhhhhhh---hhhhhh--------------hhcccceecCCCCCceeccccCceeeccchhhhccHHHHHh
Confidence 9999999999954321 111111 3577788888 78899988899999999 444334444433
Q ss_pred ecccccccccccccCCCccceeeEEEcCCCC-EEEEee-CCCcEEEEeCC
Q 043890 378 VHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGS-YSNLFRVFGCA 425 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~ 425 (509)
....... + .++.++|.|... .|++.. ..++|++|++.
T Consensus 237 ~~~N~~~--------~---~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 237 RNENKKP--------K---QLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hCCCCcc--------c---ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 2222111 1 234889998543 344444 45799999985
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=3.1e-06 Score=79.26 Aligned_cols=209 Identities=15% Similarity=0.209 Sum_probs=127.5
Q ss_pred ccceEEEEECCC--CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 40 VDIISAIEFDKT--GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 40 ~~~I~~v~~s~~--~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
...+.|+++.-+ ..++++|..+|.|.+-......... .....+|.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs---------------------~E~tp~~a------------ 102 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS---------------------AEVTPGYA------------ 102 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc---------------------ceeccccc------------
Confidence 456778887654 4689999999999998876544300 01112233
Q ss_pred ccceeeEEEEcC-CCceEEEee----CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 118 EKINKIRWCQTA-NGALFLLST----NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 118 ~~v~~l~~~~~~-~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
...++++| ++ |.+.||.|- .|..+.|||+.++-.... +.
T Consensus 103 r~Ct~lAw--neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-----e~----------------------------- 146 (783)
T KOG1008|consen 103 RPCTSLAW--NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-----ES----------------------------- 146 (783)
T ss_pred cccccccc--ccccHHHHHhhhhhhcccCCccceecccccCCCc-----cc-----------------------------
Confidence 56899999 44 555666652 267899999987632111 00
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
..|+ .+......+++|..+.+++.+| ....+.++|++.....
T Consensus 147 --~~fs----------------------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~------- 189 (783)
T KOG1008|consen 147 --PLFS----------------------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS------- 189 (783)
T ss_pred --cccc----------------------------cccccCccccccccCcchhhcccccchhhhhhhhhhhhh-------
Confidence 0000 1112234478888888899999 8889999999843211
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE-CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
...-.+..+..+...|-.++++++-. ||.|-+|| .++-+ .++..+...+.+.. ..+..++|+|-.
T Consensus 190 --~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---npl~~i~~~~N~~~--------~~l~~~aycPtr 255 (783)
T KOG1008|consen 190 --VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---NPLQIILRNENKKP--------KQLFALAYCPTR 255 (783)
T ss_pred --hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc---cHHHHHhhCCCCcc--------cceeeEEeccCC
Confidence 11113445667888884447777665 99999999 44432 12222222221111 358899999954
Q ss_pred C-EEEEe-cC-CeEEEEECCC
Q 043890 351 R-HILSR-DY-MTLKLWDINM 368 (509)
Q Consensus 351 ~-~l~s~-~~-~~i~iwd~~~ 368 (509)
. .+++. .+ ++|++||+..
T Consensus 256 tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhhccCcceEEEecccc
Confidence 4 33333 35 9999999864
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=8.5e-05 Score=72.19 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=60.5
Q ss_pred eEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 233 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
+++++|+|..-.|+.| .-|.+.+|...+.+.. .....|..+|..+.|+++| ..++++..-|.+.+|.+..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h--------tv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH--------TVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceee--------eeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 5679999999999999 9999999998875543 1346799999999999999 9999999999999998764
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.14 E-value=0.00063 Score=69.22 Aligned_cols=219 Identities=13% Similarity=0.184 Sum_probs=134.3
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
+.|.++.|..+++-+..+..+|.|.+-|.++... +.-|.- +..|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence 6899999999999999999999999998776653 222221 2679
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCC--------CC-------cccCC-CC-----c-------
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVD--------PS-------KAVGN-GN-----V------- 172 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~-------~~~~~-~~-----~------- 172 (509)
.+++| +||.+.++..+.++++.+-.-. -..+.......+ .+ .+.+. |+ .
T Consensus 113 ~aasw--S~Dee~l~liT~~~tll~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 113 SAASW--SPDEELLALITGRQTLLFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred EEEee--cCCCcEEEEEeCCcEEEEEecc-ccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 99999 9999999999988887764421 111100000000 00 01000 00 0
Q ss_pred --ccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--
Q 043890 173 --ASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-- 248 (509)
Q Consensus 173 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-- 248 (509)
..-...-+.+.|--+|.+..........+-+.+++||.. +......+ ...+.-.+++|-|.|..+++-
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-------~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE-------PVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC-------cccccccceeecCCCCeEeeeee
Confidence 001112244677778877655555555555889999865 22222211 122234578999999999874
Q ss_pred --cCCeEEEEEccCCCce-eeEeeccCCccCCCccceEEEEEeCCCCcEEEE---EEcCCeEEEEECCCCc
Q 043890 249 --DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY---SSSKGSIRLIDLRQSA 313 (509)
Q Consensus 249 --~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~---~~~dg~i~vwd~~~~~ 313 (509)
+|+.|.+|.-+..+.- +.+ .+......+..++|+.++ .+|++ ......|++|-+.+-.
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l------~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVL------PFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCCCcEEEEecCCcccccccc------CCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeE
Confidence 4677888875532211 110 122233448999999998 88887 4555669999888754
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.14 E-value=0.0026 Score=55.15 Aligned_cols=221 Identities=12% Similarity=0.203 Sum_probs=112.3
Q ss_pred ccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 40 VDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 40 ~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
.+.++.++|+|+ ++++|+....+.|.-++.+ ++. ++ ...+.+. +
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v----lr-----------------~i~l~g~-------------~ 65 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV----LR-----------------RIPLDGF-------------G 65 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E----EE-----------------EEE-SS--------------S
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE----EE-----------------EEeCCCC-------------C
Confidence 355999999997 5677778888888777754 333 11 1122331 3
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhh-hhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKV-KKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..-+|++ ..++.++++.-.++.+.++++..... .....
T Consensus 66 D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~--------------------------------------- 104 (248)
T PF06977_consen 66 DYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD--------------------------------------- 104 (248)
T ss_dssp SEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEE---------------------------------------
T ss_pred CceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchhh---------------------------------------
Confidence 4677888 66776666666689999999854321 11000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccC--CCceeeEeec-cCC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDV-KPA 273 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~--~~~~~~~~~~-~~~ 273 (509)
+ ....-.+...++..+-.++|++.++.|+.+ +..-..+|.++. .......... +..
T Consensus 105 -------~-------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 105 -------V-------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp -------E-------------EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred -------c-------------eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 0 000000112345568899999998888877 666667777764 1111111100 000
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.....-..+.+++++|...++++.+..+..|..+|.. ++. +..+..... ..-+...-...-.++|.++|++.
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~----~~~~~L~~g---~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRV----VSSLSLDRG---FHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---E----EEEEE-STT---GGG-SS---SEEEEEE-TT--EE
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCE----EEEEEeCCc---ccCcccccCCccEEEECCCCCEE
Confidence 1122344578999999876888888889999999944 442 222221110 00000011356789999999888
Q ss_pred EEecCCeEEEE
Q 043890 354 LSRDYMTLKLW 364 (509)
Q Consensus 354 ~s~~~~~i~iw 364 (509)
+++.-+..++|
T Consensus 237 IvsEpNlfy~f 247 (248)
T PF06977_consen 237 IVSEPNLFYRF 247 (248)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEe
Confidence 87754666554
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.00037 Score=67.21 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=52.4
Q ss_pred ccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCc-----------eEEEeecccccccccccccCCCccceeeEEEcC
Q 043890 339 ASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGP-----------VATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
.....+.++|||+++++++ +++|.|.|+.+.... ........++ ...+|.+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 3578899999999999875 499999999863221 1111111111 1678999
Q ss_pred CCCEEEEeeCCCcEEEEeCCC
Q 043890 406 DGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 406 ~~~~l~~~~~dg~i~iw~~~~ 426 (509)
+|....|---|.+|..|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 998888888899999999885
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00012 Score=69.07 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=95.1
Q ss_pred cCeEEEEECCCCCEEEEE--c-C--CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe--
Q 043890 231 YHINSISNNSDGETFISA--D-D--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-- 303 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~--~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~-- 303 (509)
..+..-.|+|++..++.. . . ..++++++++++....+ .+. ..-...+|+|||.+++++...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~---g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFN---GNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccC---CccCCccCCCCCCEEEEEECCCCCcc
Confidence 446667899998876643 2 2 35999999987643221 233 333457899999666667777776
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC--C--eEEEEECCCCCCceEEEeec
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY--M--TLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~~~ 379 (509)
|.++|+..+.. ..+.... +.-..-.|+|||+.++..+| | .|.++|... .....+...
T Consensus 264 iy~~dl~~~~~-----~~Lt~~~------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~ 324 (425)
T COG0823 264 IYLMDLDGKNL-----PRLTNGF------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFS 324 (425)
T ss_pred EEEEcCCCCcc-----eecccCC------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--CceeEeecc
Confidence 55567766652 1121111 22235679999999998754 4 455556553 333444433
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCc--EEEEeCCCCce
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNL--FRVFGCAPGST 429 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~iw~~~~~~~ 429 (509)
...-. .-.|+|||++|+..+. +|. |.+.++.++..
T Consensus 325 ~~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 325 GGGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CCCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 32211 4579999999997774 344 66667665553
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.07 E-value=0.0036 Score=58.66 Aligned_cols=268 Identities=13% Similarity=0.151 Sum_probs=124.7
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCC-C-cccccc------------ccccccccC--C----cceEEeee
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHG-G-SRRDLE------------RMDYSTSRH--P----EFRYKTEF 101 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~-~-~~~~~~------------~~~~~~~~~--~----~~~~~~~~ 101 (509)
.|+.+.|+++..-||+|...|.|.||.....+... + .-..++ +....++.. | .......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999988765422 0 000000 000011110 0 11122222
Q ss_pred ccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccC
Q 043890 102 QSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSP 181 (509)
Q Consensus 102 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (509)
+... +.|++++. | |=-+++.|..+|.+.|.|++....+........
T Consensus 83 ~~~~------------g~vtal~~--S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~------------------- 128 (395)
T PF08596_consen 83 DAKQ------------GPVTALKN--S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRES------------------- 128 (395)
T ss_dssp ---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred eccC------------CcEeEEec--C-CCcEEEEEecCCcEEEEECCCCeEEeecccccc-------------------
Confidence 2222 88999997 5 444999999999999999976654332111000
Q ss_pred CccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEEC-----CCC---CEEEEE-cCCe
Q 043890 182 KPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNN-----SDG---ETFISA-DDLR 252 (509)
Q Consensus 182 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-----~~~---~~l~~~-~dg~ 252 (509)
.........++++.|. .|+ -.|++| +.|.
T Consensus 129 ------------------------------------------~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 129 ------------------------------------------FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp -------------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred ------------------------------------------ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 0001223345566663 232 357778 8899
Q ss_pred EEEEEccC-CCceeeEeeccCCccCCCccceEEEE-EeCCCC-------------------cEEEEEEcCCeEEEEECCC
Q 043890 253 INLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAE-FHPTHC-------------------NMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 253 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~-------------------~~l~~~~~dg~i~vwd~~~ 311 (509)
+.+|.+.- ....+...-.. ....+.++|..+. ++.+.. .-++....+..++++.+-+
T Consensus 167 v~~fkIlp~~~g~f~v~~~~--~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAG--ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEE--EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred EEEEEEecCCCCceEEEEee--ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 99998752 22212111000 1123555655554 322210 1234444567899999887
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEe-----cCCCEEEE-ecCCeEEEEECCCCCCceEEEeeccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA-----KDGRHILS-RDYMTLKLWDINMDSGPVATFQVHEYLRPK 385 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 385 (509)
.+.. .+.++.. .....+.+- ..+..|++ -.+|.+++|.+.. -+.+.........-.
T Consensus 245 ~k~~---~K~~~~~-------------~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~- 306 (395)
T PF08596_consen 245 SKGA---HKSFDDP-------------FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDS- 306 (395)
T ss_dssp --EE---EEE-SS--------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---H-
T ss_pred Cccc---ceeeccc-------------cccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCcccc-
Confidence 6632 2233211 123334442 23444554 3569999999996 666666655321100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
.. +...+++++|..++-.+.
T Consensus 307 -------~~---~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 307 -------RR---LSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -------HH---HTT-EE-TTS-EEEE-SS
T ss_pred -------cc---ccccEECCCCCEEEEeCc
Confidence 00 115678889987765554
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.99 E-value=0.0095 Score=53.32 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=61.1
Q ss_pred EEEECCCCCEEEEE---cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 235 SISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 235 ~i~~~~~~~~l~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
.+.++.+++++++. -...|.|.|+...+...++ ...+ |...-|.++.-|.+-+.||.+.-..+..
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei------~~PG------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI------DTPG------CWLIYPSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE------EGTS------EEEEEEEETTEEEEEETTSCEEEEEETS
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee------cCCC------EEEEEecCCCceEEEecCCceEEEEECC
Confidence 35778888888776 3677888888876543322 1111 2222344445688889999999999884
Q ss_pred -CcccCCceeeeccccCCCCccccccccccEEEEEEecCC-CEEEEecCCeEEEEECCC
Q 043890 312 -SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-RHILSRDYMTLKLWDINM 368 (509)
Q Consensus 312 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~~~i~iwd~~~ 368 (509)
++...+....|.... ......-++...+ .++...-.|.|+--|+..
T Consensus 167 ~Gk~~~~~t~~F~~~~-----------dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDD-----------DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp TSSEEEEEEEESSTTT-----------S-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred CCCEeEeeccccCCCC-----------cccccccceECCCCeEEEEecCCEEEEEeccC
Confidence 443211111222111 1122233445444 455544459999988875
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.0012 Score=63.26 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=83.6
Q ss_pred cCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccc
Q 043890 128 TANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRL 207 (509)
Q Consensus 128 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 207 (509)
+..+++++.|+..|.+.+|+-..+.......
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------------------------------- 72 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------------------------------- 72 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------------
Confidence 6788899999999999999988876543211
Q ss_pred ccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEE
Q 043890 208 PTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 286 (509)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 286 (509)
.+..+.+..+.++++..++|.| ..|.|.++-+.........+ ..+ --..|...|++++
T Consensus 73 -------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~-~t~-~d~~~~~rVTal~ 131 (726)
T KOG3621|consen 73 -------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY-VTP-CDKSHKCRVTALE 131 (726)
T ss_pred -------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee-ecc-ccccCCceEEEEE
Confidence 1222335566778888888888 89999999887633221111 111 1233789999999
Q ss_pred EeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 287 FHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 287 ~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
|++++ ..+++|...|+|..-.+..
T Consensus 132 Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 132 WSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ecccc-cEEeecCCCceEEEEEech
Confidence 99999 9999999999999988877
No 334
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.96 E-value=0.016 Score=54.15 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=58.3
Q ss_pred cccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCc--cceeeEEEcC-CCC-
Q 043890 334 FTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSI--FDKFECCLSG-DGL- 408 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~-~~~- 408 (509)
+.+....+.+++.+|++++.++.+. |+|.++|+.. ...++.+++-................ ..-....-.+ ...
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3444566889999999998888766 9999999996 66666666543321100000000000 0000000000 011
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
+++-+-.-|.|.||.++.|..+. .+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~-a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVA-AFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEE-EEEe
Confidence 24456678999999999998887 5543
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.96 E-value=0.014 Score=53.33 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc---CCe-EEEEECCCCcccCCceeeecccc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGS-IRLIDLRQSALCDSHAILFEEQE 326 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~---dg~-i~vwd~~~~~~~~~~~~~~~~~~ 326 (509)
..|.-.|+.+++.. .+..-...+..+.|+|..+.+|+.|-+ +.. -|||-+++.... .+.+..+.
T Consensus 168 ~~i~~idl~tG~~~---------~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~ 235 (386)
T PF14583_consen 168 CRIFTIDLKTGERK---------VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRM 235 (386)
T ss_dssp EEEEEEETTT--EE---------EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---
T ss_pred ceEEEEECCCCcee---------EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCC
Confidence 34555566655421 222235677889999998778887765 221 366766543311 12222111
Q ss_pred CCCCccccccccccEEEEEEecCCCEEEE-e----c-CCeEEEEECCC
Q 043890 327 APGSRSFFTEIIASISDIKFAKDGRHILS-R----D-YMTLKLWDINM 368 (509)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~----~-~~~i~iwd~~~ 368 (509)
+ ...+.-=-|.|||..|.. + + +..|.-+|+.+
T Consensus 236 -~---------~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 236 -E---------GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp -T---------TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred -C---------CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 0 023444568999987765 2 1 24566677776
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0004 Score=65.80 Aligned_cols=140 Identities=11% Similarity=0.172 Sum_probs=78.6
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
.......+.++|++ +++++ ..||.-.+|.....+. +.+ +.-..+.|.+.+++.+.-.
T Consensus 31 ~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~-----k~~----------------G~g~~~vw~~~n~yAv~~~ 87 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRN-----KAF----------------GSGLSFVWSSRNRYAVLES 87 (443)
T ss_dssp -SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEE-----EEE----------------EE-SEEEE-TSSEEEEE-T
T ss_pred CCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCcc-----ccc----------------CceeEEEEecCccEEEEEC
Confidence 34457899999998 77777 5677888887433221 111 3556788999777555545
Q ss_pred CCeEEEE-ECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 358 YMTLKLW-DINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 358 ~~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
.++|.|+ ++. ......++.... +. .+ |. |.+|+..+.+ .|.+||+.+++.+. .+..
T Consensus 88 ~~~I~I~kn~~--~~~~k~i~~~~~-~~---------------~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~-~i~v 144 (443)
T PF04053_consen 88 SSTIKIYKNFK--NEVVKSIKLPFS-VE---------------KI-FG--GNLLGVKSSD-FICFYDWETGKLIR-RIDV 144 (443)
T ss_dssp TS-EEEEETTE--E-TT-----SS--EE---------------EE-E---SSSEEEEETT-EEEEE-TTT--EEE-EESS
T ss_pred CCeEEEEEcCc--cccceEEcCCcc-cc---------------eE-Ec--CcEEEEECCC-CEEEEEhhHcceee-EEec
Confidence 6889996 443 223223332211 10 11 22 8877766655 89999999998887 3331
Q ss_pred CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 437 SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 437 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
.+|..+.|++++.++|..+.+.++|+.
T Consensus 145 ---------------------------------------------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 145 ---------------------------------------------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp ----------------------------------------------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred ---------------------------------------------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 238899999999999999999998864
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=5.3e-05 Score=70.97 Aligned_cols=95 Identities=13% Similarity=0.232 Sum_probs=70.7
Q ss_pred ceeEEeeccccccc---cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcc
Q 043890 19 PLEWKFSQVFGERT---AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEF 95 (509)
Q Consensus 19 ~~~~~~~~~~~~~~---~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (509)
-++|...+.-..+. ....+.....|.|++++|+.+.|+.|+.||.|.+||...+..
T Consensus 235 ~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------------------- 293 (545)
T PF11768_consen 235 SADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------------------- 293 (545)
T ss_pred eeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---------------------
Confidence 34555554432222 223345788999999999999999999999999999876543
Q ss_pred eEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh
Q 043890 96 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK 152 (509)
Q Consensus 96 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 152 (509)
.+.... -..+.++| +|+|..+++|+..|.+.+||+.-..
T Consensus 294 ----~~~ka~------------~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 294 ----LLAKAE------------FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ----eeeeec------------ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence 111111 34788999 9999999999999999999987543
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00086 Score=65.18 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=100.0
Q ss_pred CeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 232 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
.+.|++++ +++|+-| .+|.|++++....- . ....|+.. ..+| .++++|+.||+|.|-.+-
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~--------~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K--------TNFDHSSS------ILEG-EYVASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--c--------cccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence 34455553 5788999 89999999887432 1 22234333 5566 899999999999999988
Q ss_pred CCcccCCceeeeccccCCCCccccccccccEEEEEEecC-----CCEEEEecC-CeEEEEECCCCCCceE-EEeeccccc
Q 043890 311 QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-----GRHILSRDY-MTLKLWDINMDSGPVA-TFQVHEYLR 383 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~s~~~-~~i~iwd~~~~~~~~~-~~~~~~~~~ 383 (509)
+.+.+ ..+.-+ .++.+++++|+ .+.+++|+. | +.++.-+-.+.... .+....+.
T Consensus 102 ~~~~~----~~~df~-------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~- 162 (846)
T KOG2066|consen 102 TDDEI----TQYDFK-------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP- 162 (846)
T ss_pred CCccc----eeEecC-------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc-
Confidence 87752 333332 47999999997 567888776 6 77776443222111 23333333
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
|.+++| .|.++|=++.+ -|++||+.+++.+. .++...
T Consensus 163 --------------I~~i~W--~g~lIAWand~-Gv~vyd~~~~~~l~-~i~~p~ 199 (846)
T KOG2066|consen 163 --------------IHSIKW--RGNLIAWANDD-GVKVYDTPTRQRLT-NIPPPS 199 (846)
T ss_pred --------------eEEEEe--cCcEEEEecCC-CcEEEeccccceee-ccCCCC
Confidence 238888 56777766655 68999999988887 555443
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.002 Score=60.97 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred EEEECCCCCEEEEE--cCCe--EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe--EEEEE
Q 043890 235 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS--IRLID 308 (509)
Q Consensus 235 ~i~~~~~~~~l~~~--~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~--i~vwd 308 (509)
.-.|+|+|+.|+.+ .||. |++.|+.... .. .+....+.-..-.|+|+|.+++++.+..|. |.++|
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~--------~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LP--------RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ce--------ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence 34799999988866 5555 5555666544 11 222222333367899999555556556665 55556
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCe--EEEEECCCCCCceEEEeecccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMT--LKLWDINMDSGPVATFQVHEYLRP 384 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~--i~iwd~~~~~~~~~~~~~~~~~~~ 384 (509)
+...... ..++.. ..-..-.|+|||++++..+ +|. |.+.|+.+... .+.+...... .
T Consensus 313 ~~g~~~~---riT~~~--------------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~-e 373 (425)
T COG0823 313 LEGSQVT---RLTFSG--------------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLN-E 373 (425)
T ss_pred CCCCcee---EeeccC--------------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccC-C
Confidence 6555420 111111 1222667999999999864 355 66677765322 3333322111 1
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
.-.|.++++.++..+..
T Consensus 374 ---------------~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 374 ---------------SPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ---------------CCCcCCCCceEEEeccC
Confidence 45788888887765543
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.88 E-value=0.0019 Score=56.70 Aligned_cols=151 Identities=12% Similarity=0.086 Sum_probs=87.9
Q ss_pred cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 249 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
++|.|..||.++++...+. .+..-.......... ++ ..+++++.++.|..||..+++..+ .+....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~l~~~d~~tG~~~W----~~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVP-DG-GRVYVASGDGNLYALDAKTGKVLW----RFDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEE-ET-TEEEEEETTSEEEEEETTTSEEEE----EEECSS--
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEE-eC-CEEEEEcCCCEEEEEECCCCCEEE----Eeeccc--
Confidence 4788999999888876653 121111222221232 33 567777899999999999998532 222111
Q ss_pred CCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEE-eecccccccccccccCCCccceeeEEEcCCC
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATF-QVHEYLRPKLCDLYENDSIFDKFECCLSGDG 407 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 407 (509)
.+.......++..++...++.++.+|..+ ++.+... ........ ... ......++
T Consensus 67 -----------~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~~~--~~~~~~~~ 122 (238)
T PF13360_consen 67 -----------PISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------VRS--SSSPAVDG 122 (238)
T ss_dssp -----------CGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------TB----SEEEEET
T ss_pred -----------cccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc----------ccc--ccCceEec
Confidence 10000122344554455568999999887 6666553 32211100 000 22233347
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 408 LRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 408 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
..++.+..++.|..+|+++|+.+- ......
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w-~~~~~~ 152 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLW-KYPVGE 152 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEE-EEESST
T ss_pred CEEEEEeccCcEEEEecCCCcEEE-EeecCC
Confidence 788888889999999999999876 555543
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.84 E-value=0.02 Score=51.31 Aligned_cols=165 Identities=10% Similarity=0.064 Sum_probs=84.3
Q ss_pred EEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccce-EEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeec
Q 043890 245 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFE 323 (509)
Q Consensus 245 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 323 (509)
...|.||.+.-..+....+..... . ..+.....++ ..-++...+ ..++--+.+|.|+--|+....... ...+.
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~--t-~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~ 224 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKS--T-KVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWS 224 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEE--E-EESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEE
T ss_pred EEEecCCceEEEEECCCCCEeEee--c-cccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCccc
Confidence 333466666666666433222110 0 1222222323 234455554 456657889999999988765311 11221
Q ss_pred cccCCCCcccccc-ccccEEEEEEecCCCEEEE----ec-----C--CeEEEEECCCCCCceEEEeeccccccccccccc
Q 043890 324 EQEAPGSRSFFTE-IIASISDIKFAKDGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE 391 (509)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s----~~-----~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
.-... ....+ -.+.-.-+++++....|+. +. + ..|.++|+.+ .+.+..+..... +.
T Consensus 225 ~~t~~---e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~-~~------- 292 (342)
T PF06433_consen 225 LLTDA---EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHP-ID------- 292 (342)
T ss_dssp SS-HH---HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEE-ES-------
T ss_pred ccCcc---ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCc-cc-------
Confidence 10000 00000 0134555788875554443 21 2 3588889987 677777664322 11
Q ss_pred CCCccceeeEEEcCCCC-EEEEe-eCCCcEEEEeCCCCceeeeeecc
Q 043890 392 NDSIFDKFECCLSGDGL-RVATG-SYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
++..+.+.+ +|++. ..++.+.+||..+|+++. +++.
T Consensus 293 --------Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~-~~~~ 330 (342)
T PF06433_consen 293 --------SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR-SIEQ 330 (342)
T ss_dssp --------EEEEESSSS-EEEEEETTTTEEEEEETTT--EEE-EE--
T ss_pred --------eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe-ehhc
Confidence 788887766 55544 458999999999999887 6653
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.017 Score=50.23 Aligned_cols=175 Identities=14% Similarity=0.166 Sum_probs=81.3
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeE---eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEE
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI---VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 306 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~v 306 (509)
+..-.|++..++.++++. .++.+.++++......... ..+.......+...+-.++|++.+ +.|+.+-+..-..+
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRL 143 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhh
Confidence 346678888888777777 7999999998543322111 101111112355678999999997 56666666666666
Q ss_pred EECCC--CcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EEEEec-CCeEEEEECCCCCCceEEEeecccc
Q 043890 307 IDLRQ--SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 307 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
|.++. .... ........... .......+.++.++|... +++.++ ...|.++|.. ++++..+.-..+.
T Consensus 144 ~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~ 214 (248)
T PF06977_consen 144 YEVNGFPGGFD---LFVSDDQDLDD----DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGF 214 (248)
T ss_dssp EEEESTT-SS-----EEEE-HHHH-----HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTG
T ss_pred EEEccccCccc---eeecccccccc----ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcc
Confidence 66654 1100 11111000000 011124578899999654 444444 3889999955 5666555433211
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEE
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
.... ..+..--.++|.++|++.+ .++-+..++|
T Consensus 215 ~gl~------~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 215 HGLS------KDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp GG-S------S---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cCcc------cccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 0000 0000011789999986554 5566666665
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.82 E-value=0.019 Score=54.68 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceee
Q 043890 242 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAIL 321 (509)
Q Consensus 242 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 321 (509)
|.+|....++.|.+||+.+++.+.++ . -.+|..+.|++++ .+++..+.+ .+.+++.+.... ..
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i--------~--v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~-----~~ 179 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRI--------D--VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAV-----AA 179 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEE--------S--S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHH-----HH
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEE--------e--cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhc-----cc
Confidence 77777776668999999987755432 1 2248999999998 788877755 577766554300 00
Q ss_pred eccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeE
Q 043890 322 FEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFEC 401 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 401 (509)
.+....+.......+....|.+.+|..| -++.+.. +.++- +.. .....+..-.... +=+
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~~lkY--l~~--Ge~~~i~~ld~~~---------------yll 238 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-NHLKY--LVN--GETGIIAHLDKPL---------------YLL 238 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-TEEEE--EET--TEEEEEEE-SS-----------------EEE
T ss_pred ccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-CeEEE--EEc--CCcceEEEcCCce---------------EEE
Confidence 0000000000111111257888999866 3333333 35554 332 2222222211111 145
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 402 CLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 402 ~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
.+.++.+.|.....|+.|..+.++.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEccCCEEEEEECCCCEEEEEECH
Confidence 6677667888888888888888764
No 344
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.82 E-value=0.0087 Score=57.06 Aligned_cols=136 Identities=7% Similarity=-0.032 Sum_probs=76.4
Q ss_pred CEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceee
Q 043890 243 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAIL 321 (509)
Q Consensus 243 ~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 321 (509)
..++.+ .+|.+..+|..+++...+. .+. ....+.. .+ ..++.++.+|.+..+|..+++..++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~---- 319 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWS---- 319 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEc----
Confidence 345445 7889999999988755431 111 1112222 23 4677778899999999998874332
Q ss_pred eccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeE
Q 043890 322 FEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFEC 401 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 401 (509)
...... ....+.... ++.+++...+|.+++.|..+ ++.+............ ..
T Consensus 320 --~~~~~~---------~~~~sp~v~-~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~s--------------~P 372 (394)
T PRK11138 320 --QSDLLH---------RLLTAPVLY-NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFLS--------------EP 372 (394)
T ss_pred --ccccCC---------CcccCCEEE-CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccee--------------CC
Confidence 110000 011111221 44444434469999999987 6666555432211110 11
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeC
Q 043890 402 CLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 402 ~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
.+ .+..|+.++.||.|+.++.
T Consensus 373 ~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--ECCEEEEEeCCceEEEEeC
Confidence 22 2446788899999988764
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.81 E-value=0.023 Score=51.12 Aligned_cols=159 Identities=17% Similarity=0.147 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCeEEEEEccCCCcee--eEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCc
Q 043890 241 DGETFISADDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSH 318 (509)
Q Consensus 241 ~~~~l~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 318 (509)
....|+++....|.+|......... .. .++ .....+.+++|.+ +.++.|..+ ...+.|+.++..
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~-----ke~-~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~---- 169 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKLL-----KEI-SLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSP---- 169 (275)
T ss_pred cceEEEEEECCEEEEEEEECCccccccee-----EEE-EcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCc----
Confidence 3445666655689998887642211 11 011 2347788999984 457766654 488899997653
Q ss_pred eeeeccccCCCC-ccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceE--EEeecccccccccccccCCCc
Q 043890 319 AILFEEQEAPGS-RSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEYLRPKLCDLYENDSI 395 (509)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 395 (509)
..+........ .........++..+.. +++.+|++-+ ..-.+.|.. +++.+ .+.-...+.
T Consensus 170 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~-~~g~fv~~~--G~~~r~~~i~W~~~p~------------ 232 (275)
T PF00780_consen 170 -SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD-NIGVFVNKN--GEPSRKSTIQWSSAPQ------------ 232 (275)
T ss_pred -eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec-ceEEEEcCC--CCcCcccEEEcCCchh------------
Confidence 22211110000 0000011123333333 3467776543 333334544 23222 222222111
Q ss_pred cceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 396 FDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 396 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
.+.+ ...||+.... +.|.||++.++++++ ++..+.
T Consensus 233 ----~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ-~i~~~~ 267 (275)
T PF00780_consen 233 ----SVAY--SSPYLIAFSS-NSIEVRSLETGELVQ-TIPLPN 267 (275)
T ss_pred ----EEEE--ECCEEEEECC-CEEEEEECcCCcEEE-EEECCC
Confidence 4555 3457876665 459999999999887 766543
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.73 E-value=0.0071 Score=56.57 Aligned_cols=287 Identities=12% Similarity=0.203 Sum_probs=133.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
...+....|||+|+.+|... ++.|.+++..++.. .++.. .+... .+.|- +++-+ .-+.-+.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~--~~lT~-dg~~~------------i~nG~-~dwvy--eEEv~~~ 102 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE--TQLTT-DGEPG------------IYNGV-PDWVY--EEEVFDR 102 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE--EESES---TTT------------EEESB---HHH--HHHTSSS
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCe--EEecc-cccee------------EEcCc-cceec--ccccccc
Confidence 46788999999999999887 57899998876643 00000 00000 00010 11111 1111133
Q ss_pred ceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 120 INKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
-..+.| +||+++|+.... +..|+.+.+............... ..+-..
T Consensus 103 ~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~-----------------------------~~YPk~ 151 (353)
T PF00930_consen 103 RSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES-----------------------------IRYPKA 151 (353)
T ss_dssp SBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE-----------------------------EE--BT
T ss_pred ccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc-----------------------------cccCCC
Confidence 467889 999999998755 455665554322110000000000 001111
Q ss_pred CCCCCcccc--ccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEE-E--c---CCeEEEEEccCCCceeeEeec
Q 043890 199 PGGIPSLRL--PTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS-A--D---DLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 199 ~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~--~---dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+.....+++ +++.+.....+..+. . ......-+..+.|.++++.|+. - . .-.+.++|..++.........
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~-~-~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPN-S-LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---H-H-HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcCCceEEEEEECCCCcEEEeeecc-c-cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 222233333 333333222111000 0 0123445788999999884443 2 2 234566677665543322111
Q ss_pred cCCccCCCccceEEEEEe-CCCCcEEEEEEcCCeEEE--EECCCCcccCCceeeeccccCCCCccccccccccEEE-EEE
Q 043890 271 KPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRL--IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD-IKF 346 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~-~~~~~~l~~~~~dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~ 346 (509)
...-+ ..-..+.+. +++..++.....+|.-+| ++...+. .+.+.... -.|.. +.+
T Consensus 230 ~~~Wv----~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~~lT~G~------------~~V~~i~~~ 288 (353)
T PF00930_consen 230 SDGWV----DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PRQLTSGD------------WEVTSILGW 288 (353)
T ss_dssp SSSSS----SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EEESS-SS------------S-EEEEEEE
T ss_pred CCcce----eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----eeccccCc------------eeecccceE
Confidence 11111 122244554 666567777777876554 4555443 12222111 34544 678
Q ss_pred ecCCCEEEE-ec--C-CeEEEEECCCC-CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 347 AKDGRHILS-RD--Y-MTLKLWDINMD-SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 347 s~~~~~l~s-~~--~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
+++++.|.. +. + ..-.||-+... +..+..+....... +.+.|||++++++...
T Consensus 289 d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 289 DEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPDGKYYVDTY 346 (353)
T ss_dssp ECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TTSSEEEEEE
T ss_pred cCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCCCCEEEEEE
Confidence 888776553 42 2 45555555443 45555555433321 1789999999987543
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.011 Score=49.91 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC
Q 043890 51 TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN 130 (509)
Q Consensus 51 ~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 130 (509)
-|++++.|...|.+++.+..++.. .+.+..- +.|.+-+-+ .++
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~-----------------------~w~f~~~-------------~~vk~~a~~-d~~ 104 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ-----------------------IWNFVIL-------------ETVKVRAQC-DFD 104 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh-----------------------eeeeeeh-------------hhhccceEE-cCC
Confidence 367788999999999999998866 3333322 123222222 678
Q ss_pred CceEEEeeCCCeEEEEeccchhhhhh
Q 043890 131 GALFLLSTNDKTIKFWKVQEKKVKKI 156 (509)
Q Consensus 131 ~~~l~s~~~dg~i~vwd~~~~~~~~~ 156 (509)
+.++..++.|++....|..+..++..
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEe
Confidence 99999999999999999988765544
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.60 E-value=0.013 Score=59.07 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=85.3
Q ss_pred cEEEEE-EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--------CCEEEEecCCeEEE
Q 043890 293 NMLAYS-SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--------GRHILSRDYMTLKL 363 (509)
Q Consensus 293 ~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------~~~l~s~~~~~i~i 363 (509)
++|+.. .....|+-.|+..++. +..|..+.. .+|.. +.|+ ...++.-+++.+..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV----V~eW~~~~~-----------~~v~~--~~p~~K~aqlt~e~tflGls~n~lfr 556 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV----VEEWKVHDD-----------IPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFR 556 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE----EEEeecCCC-----------cceeE--ecccccccccCCCceEEEECCCceEE
Confidence 444433 3457899999999986 566766542 12333 3332 22333335689999
Q ss_pred EECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 364 WDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 364 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
||.+..+..+..-..+... ...-+ .+++-+.+ .+||.|+.+|.|++||- .|..-+..|.
T Consensus 557 iDpR~~~~k~v~~~~k~Y~---------~~~~F--s~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp-------- 615 (794)
T PF08553_consen 557 IDPRLSGNKLVDSQSKQYS---------SKNNF--SCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALP-------- 615 (794)
T ss_pred eccCCCCCceeeccccccc---------cCCCc--eEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCC--------
Confidence 9999743222211122211 01111 14555444 47899999999999993 2322110111
Q ss_pred EEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 444 QVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 444 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
.+..+|.+|..+.||+||+..+...+.|+++
T Consensus 616 -----------------------------------~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 616 -----------------------------------GLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred -----------------------------------CCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 1257889999999999988888888877753
No 349
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.019 Score=49.35 Aligned_cols=197 Identities=18% Similarity=0.224 Sum_probs=112.6
Q ss_pred EEEEeCCCCcEEEEEEcCCe-EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-----
Q 043890 284 SAEFHPTHCNMLAYSSSKGS-IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----- 357 (509)
Q Consensus 284 ~l~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----- 357 (509)
.++++|.-+.-++.+-.-|+ ..++|....+.. .++...+ ..-+.+|. .|||||++|.+..
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~p----v~~~s~~----~RHfyGHG------vfs~dG~~LYATEndfd~ 137 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEP----VTLVSQE----GRHFYGHG------VFSPDGRLLYATENDFDP 137 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCc----EEEeccc----Cceeeccc------ccCCCCcEEEeecCCCCC
Confidence 57778876666666666555 568898887642 2222111 11233332 5999999999851
Q ss_pred C-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC------C------------Cc
Q 043890 358 Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY------S------------NL 418 (509)
Q Consensus 358 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d------------g~ 418 (509)
. |.|-|||.+.....+..+..|.-... .+.|.+||+.|+.+.. | -.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpH---------------ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPH---------------EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcc---------------eeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence 2 88999999965566666766654433 7899999999886643 1 12
Q ss_pred EEEEeCCCCceeee-eec--cCCCceeEEEEcCCCCCC----------cccceeeEeecCCCCCcccCCCc-ccccccce
Q 043890 419 FRVFGCAPGSTEAT-TLE--ASKNPMRRQVQTPSRPSR----------SLSSITRVVRRGSDVPGVDTNGN-SFDFTTKL 484 (509)
Q Consensus 419 i~iw~~~~~~~~~~-~~~--~~~~~v~~~~~s~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 484 (509)
+.+-|..+|+++.+ +|. .+...++.+..-+++.-- -.-.++-....+..+...++..+ ...+..-|
T Consensus 203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 34445445554431 222 233445666655554320 00011111222333333333222 11334557
Q ss_pred EEEEEcCCCcEEEEEec--CceEEEeC
Q 043890 485 LHLAWHPTENSIACAAA--NSLYMYYA 509 (509)
Q Consensus 485 ~~~~~~p~~~~la~~~~--~~i~v~~~ 509 (509)
-+++-+-+..+++..+. |...+|++
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEc
Confidence 78999888888887776 77778874
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.063 Score=51.13 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=29.5
Q ss_pred ccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEee
Q 043890 339 ASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 378 (509)
+++..+++||+|+++|.-.+ |.+.+.+..- .+.+..+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~ 256 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT 256 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec
Confidence 57999999999999998654 8998887664 444544443
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.14 Score=48.83 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=37.0
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC-CCceeEEEEcCC
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS-KNPMRRQVQTPS 449 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~s~~ 449 (509)
.+++||++++||.-..+|.+.+...+-.+.+. .+... ..+...+.|..+
T Consensus 221 ~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~-e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 221 KIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC-EFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEECCCCCEEEEEECCCCEEEEECcccceeE-EeecCcCCCCcEEEEECC
Confidence 89999999999999999999999877555555 44444 345567777654
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.35 E-value=0.029 Score=56.80 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=49.7
Q ss_pred ccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 230 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
.....|++-..+| ++|+| .+|.||+||-- +.... ..+.+...+|.+|..+.|| ++++..+ +..+.+++
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AK-------T~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAK-------TALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID 645 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhh-------hcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence 3457788877777 66666 99999999943 33221 2566778999999999999 5555443 45788887
Q ss_pred CC
Q 043890 309 LR 310 (509)
Q Consensus 309 ~~ 310 (509)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 63
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00046 Score=40.01 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=29.0
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEE
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFE 68 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~ 68 (509)
.|...|.++.|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4788999999999999999999999999996
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.29 E-value=0.18 Score=49.52 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 406 DGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 406 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
.+..|+.++.||.|+.+|.++|+.+- .++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW-~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELW-KFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceee-EEEC
Confidence 56788889999999999999999886 5543
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0018 Score=61.28 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceE-EEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
..+.-+.|+|.-.++|.+ .+|.|.+..+. .+.+. .+..+...++ +++|.||| ++||+|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw--------tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW--------TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeE--------eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 347778999999999999 99999999887 34332 3444555565 99999998 9999999999999999
Q ss_pred CCCCcc
Q 043890 309 LRQSAL 314 (509)
Q Consensus 309 ~~~~~~ 314 (509)
..++..
T Consensus 91 ve~~~~ 96 (665)
T KOG4640|consen 91 VEKGGR 96 (665)
T ss_pred ccCCCc
Confidence 999875
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.18 E-value=0.12 Score=50.51 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=25.3
Q ss_pred eEEEcCCCCEEEEeeC-CCcEEEEeCCCCce
Q 043890 400 ECCLSGDGLRVATGSY-SNLFRVFGCAPGST 429 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~ 429 (509)
.+.++|||+++++++. +++|.|.|+.+.+.
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 7899999999887765 89999999986543
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.031 Score=48.04 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=45.4
Q ss_pred cCeEEEEECCCCCEEEEE-cCCe----EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 231 YHINSISNNSDGETFISA-DDLR----INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
-.++.++..++|..++.+ ..|. --+.-...+...++.+.+.+.........|-+++.+.+.....+++-..+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 346777778888776655 2211 11111111222222222222222334566788888876634444555566788
Q ss_pred EEECCCCcc
Q 043890 306 LIDLRQSAL 314 (509)
Q Consensus 306 vwd~~~~~~ 314 (509)
+||..++.+
T Consensus 306 i~da~tG~v 314 (366)
T COG3490 306 IWDAATGAV 314 (366)
T ss_pred EEEcCCCcE
Confidence 999999975
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.0016 Score=37.53 Aligned_cols=28 Identities=21% Similarity=0.621 Sum_probs=25.8
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEe
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWK 147 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd 147 (509)
..|.++.| .++++.+++++.|+.+++|+
T Consensus 13 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAF--SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence 77999999 88888999999999999996
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.09 E-value=0.2 Score=45.01 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=71.0
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeec-cCC-----ccCCCccceEEEE--EeCCCCcEEEEEEcCCeE
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV-KPA-----NMEDLTEVITSAE--FHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~~~i~~l~--~~~~~~~~l~~~~~dg~i 304 (509)
|..+...++-+.|++-.|+.++++++..-......... .+. ........+..++ -...+...|++ .....|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE-EECCEE
Confidence 88899989888888877799999999865433210000 000 0111123344444 12333234444 445589
Q ss_pred EEEECCCCcccC-CceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCC
Q 043890 305 RLIDLRQSALCD-SHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINM 368 (509)
Q Consensus 305 ~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 368 (509)
.+|......... ...+.+..+ ..+.+++|. +..++.|..+...+.|+.+
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~ 166 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT 166 (275)
T ss_pred EEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC
Confidence 998887643221 223444433 478889998 5677777667789999985
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.21 Score=45.12 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=61.2
Q ss_pred ccEEEEEEecCCCEEEEec-C-CeEEEEECCC-CC----Cc-eEEEeecccccccccccccCCCccceeeEEEcCCCCEE
Q 043890 339 ASISDIKFAKDGRHILSRD-Y-MTLKLWDINM-DS----GP-VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV 410 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~-~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 410 (509)
..-+.++||||++.|+.++ . +.|+-|++.. .. +. ...+....+..- .++...+|.+-
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD---------------G~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD---------------GMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC---------------ceEEeCCCCEE
Confidence 3567899999999888875 3 8888887762 11 11 111111111111 67888888887
Q ss_pred EEeeCCC-cEEEEeCCCCceeeeeeccCCCceeEEEEcC
Q 043890 411 ATGSYSN-LFRVFGCAPGSTEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 411 ~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (509)
+++..+| .|..|+.+ |+++. .+..+...+.+++|-.
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~-~i~lP~~~~t~~~FgG 264 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLG-EIKLPVKRPTNPAFGG 264 (307)
T ss_pred EecccCCceEEEECCC-CcEEE-EEECCCCCCccceEeC
Confidence 6555554 99999999 88887 7776656667777654
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.07 E-value=0.0021 Score=39.04 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=28.7
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERT 70 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~ 70 (509)
...|.+++|+|...+||.|..+|.|.|++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999994
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0026 Score=60.35 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=65.1
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
.-.|.-+.|+|.-.++|++..+|.|.+..+. -++ +.++.-|. ..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-----------------------lwtip~p~------------~~ 63 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-----------------------LWTIPIPG------------EN 63 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cce-----------------------eEeccCCC------------Cc
Confidence 4568889999999999999999999999988 333 45555444 34
Q ss_pred ce-eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhh
Q 043890 120 IN-KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKI 156 (509)
Q Consensus 120 v~-~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 156 (509)
++ +++| .|||+.|+.|-.||+|++.|++++.....
T Consensus 64 v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 64 VTASLCW--RPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceeeee--cCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 55 9999 99999999999999999999998865543
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.19 Score=46.46 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=70.9
Q ss_pred cccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEE
Q 043890 227 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 306 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~v 306 (509)
....++|++++-- +..|+++.++.|.+|++...+..... ........+.++... + ++++.|.....+.+
T Consensus 85 ~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~------~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKK------AFYDSPFYITSLSVF--K-NYILVGDAMKSVSL 153 (321)
T ss_dssp EEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEE------EEE-BSSSEEEEEEE--T-TEEEEEESSSSEEE
T ss_pred EeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhh------heecceEEEEEEecc--c-cEEEEEEcccCEEE
Confidence 3346778888765 44577776789999999987623221 122223356666655 3 68889998888887
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECC
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDIN 367 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~ 367 (509)
+..+.... .+..+..... ...+.++.|-+++..++.++. |.+.++...
T Consensus 154 ~~~~~~~~---~l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENN---KLILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE----EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCC---EEEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 75443211 0122221110 146888889877777777764 999999876
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.31 Score=46.14 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=111.7
Q ss_pred CeEEEEECCCCCEEEEE-c---CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 232 HINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
....++++++++.+.++ . ++.+.+.|..+.+....+ ..-..+ ..+++.|++...+++-..++.|.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--------~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--------PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------ecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 35578999999888877 4 588888888776644331 111123 7899999993355555578999999
Q ss_pred ECCCCccc-CCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC----CeEEEEECCCCCCceEE-Eeeccc
Q 043890 308 DLRQSALC-DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEY 381 (509)
Q Consensus 308 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~-~~~~~~ 381 (509)
|....... ......... ......+.++|+|..+....+ +.+...|..+ ...... ......
T Consensus 188 ~~~~~~v~~~~~~~~~~~-------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~ 253 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGV-------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSG 253 (381)
T ss_pred eCCCcceecccccccccc-------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccC
Confidence 97766531 000000111 124567899999997777532 4788888875 333332 222111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCCCCceeeeeeccCCC---ceeEEEEcCC
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCAPGSTEATTLEASKN---PMRRQVQTPS 449 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~v~~~~~s~~ 449 (509)
.. ..+.++|+|+++..... .+.+.+-|..+..... .+..... ....+++.+.
T Consensus 254 ~~---------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 254 AP---------------RGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK-TGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CC---------------CceeECCCCCEEEEEecCCCeEEEEeCCCCceee-eecccccccccceeccceee
Confidence 11 16889999999888854 4899999988877665 4444432 2334444443
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.33 Score=45.95 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=109.3
Q ss_pred eEEEEECCCCCEEEE-E-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc---CCeEEEE
Q 043890 233 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLI 307 (509)
Q Consensus 233 v~~i~~~~~~~~l~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~---dg~i~vw 307 (509)
-..+++++.+..+.. . +++.|.+.|..+....... .. ......++++|++ +.+.++.. ++.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~-------~v--G~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI-------PV--GLGPVGLAVDPDG-KYVYVANAGNGNNTVSVI 145 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe-------ee--ccCCceEEECCCC-CEEEEEecccCCceEEEE
Confidence 446788888875444 4 6899999997765543221 11 1255689999998 44444443 6889999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceE-----EEeecc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHE 380 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~-----~~~~~~ 380 (509)
|-.+.+.. ....... .+ ..++++|+|..++... ++.|.+.|... ..... ......
T Consensus 146 d~~t~~~~----~~~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~ 207 (381)
T COG3391 146 DAATNKVT----ATIPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGT 207 (381)
T ss_pred eCCCCeEE----EEEecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCC
Confidence 98887742 2222111 23 7899999999877764 59999999775 22221 011111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEeeCC---CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 381 YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
.+ ..+.++|+|.++...... +.+...|..++......+.........+...|++..
T Consensus 208 ~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 208 GP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred CC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 11 168999999977766544 588888988877665212222213344566666554
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.061 Score=39.49 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=43.3
Q ss_pred EEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEE
Q 043890 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWD 365 (509)
Q Consensus 286 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd 365 (509)
.|..+|.+.|++|+.|..|++|+=..- +..+... ..|.+++-...+++.++-.+|+|-+|+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~------~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEI------VAEITET-------------DKVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcE------EEEEecc-------------cceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 344566689999999999999975432 3333333 478888877765544444568998887
Q ss_pred CC
Q 043890 366 IN 367 (509)
Q Consensus 366 ~~ 367 (509)
-.
T Consensus 70 ~~ 71 (111)
T PF14783_consen 70 RS 71 (111)
T ss_pred Cc
Confidence 64
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.88 E-value=0.46 Score=45.73 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=25.5
Q ss_pred cceEEEEECCCCCeEEee-cC----CCeEEEEEccCCCC
Q 043890 41 DIISAIEFDKTGDHLATG-DR----GGRVVLFERTDTKD 74 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g-~~----dg~i~lw~~~~~~~ 74 (509)
..+....+||+|++||.+ +. ...|+++|+.+++.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 345578899999999865 22 24699999998865
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.028 Score=52.60 Aligned_cols=142 Identities=12% Similarity=0.157 Sum_probs=87.0
Q ss_pred EEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC--------EEEEecCCeEEEEE
Q 043890 294 MLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR--------HILSRDYMTLKLWD 365 (509)
Q Consensus 294 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~s~~~~~i~iwd 365 (509)
+|.++.....++-.|+..++. +..+..+. .|+-+.+.|+.+ .|+--++..|.=||
T Consensus 348 il~~~~~~~~l~klDIE~GKI----VeEWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKI----VEEWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred EeeCCCCcCcceeeeccccee----eeEeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 455566667788899999986 56666553 366667777544 23333568899999
Q ss_pred CCCCCC-ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEE
Q 043890 366 INMDSG-PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQ 444 (509)
Q Consensus 366 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 444 (509)
.+-.+. .+.....|..... +... |++- ....++|.|+.+|.|++||- .+..-+..|++-
T Consensus 411 pRv~~~~kl~~~q~kqy~~k--------~nFs---c~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL------- 470 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYSTK--------NNFS---CFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL------- 470 (644)
T ss_pred ccccCcceeeeeeccccccc--------cccc---eeee-cCCceEEEeecCCcEEeehh-hhhhhhhccccc-------
Confidence 986444 2222333332211 1111 3333 34457899999999999997 454443223322
Q ss_pred EEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 445 VQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 445 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
..+|..+..+.+|++++..+...+.+.+
T Consensus 471 ------------------------------------G~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 471 ------------------------------------GDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred ------------------------------------CCceeeEEeeccCcEEEEecccEEEEEE
Confidence 4667777777788777777766666543
No 369
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.27 Score=42.85 Aligned_cols=136 Identities=10% Similarity=0.147 Sum_probs=77.5
Q ss_pred EEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee--ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 235 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 235 ~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
.|.+..+|++.++- .++.+.++.+........... ++.......+...-.++|.|.+ ..|..+-+..-+.||....
T Consensus 133 ~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 133 TIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred HeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEec
Confidence 46677777777777 789999988876543332211 1111222226677899999998 7777777777777777664
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEEecC-CeEEEEECCCCCCceEEEeec
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILSRDY-MTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~ 379 (509)
.. ..+..+....+.....-.-..+.++.|++. +.+|+-+.. +.+.-.|.. +.++..+..+
T Consensus 212 ~~------~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~ 273 (316)
T COG3204 212 SP------SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLT 273 (316)
T ss_pred CC------cccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEec
Confidence 33 111111110000000011246788889874 445555544 777777776 3445544433
No 370
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.83 E-value=0.4 Score=44.66 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC--CCCcEEEEEEcCCeEEEEEC-CCCcccCCceeeecccc
Q 043890 250 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDL-RQSALCDSHAILFEEQE 326 (509)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~ 326 (509)
..++.+||+.+.+....+ .+.........+.|.. +...=|+.+.-...|..|-- ..++...+.+-.+....
T Consensus 221 G~~l~vWD~~~r~~~Q~i------dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTI------DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp --EEEEEETTTTEEEEEE------ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cCeEEEEECCCCcEeeEE------ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 478999999986644332 2222223344566654 33223333333444444433 44432211122222111
Q ss_pred C-----CCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEE
Q 043890 327 A-----PGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVAT 375 (509)
Q Consensus 327 ~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~ 375 (509)
. +.....+.+-..-|+.+..|.|.++|..+. .|.|+.||+..+..+...
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 0 000011112235689999999999999874 599999999976665544
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.1 Score=38.37 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=39.2
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe---CCCCcEEEEEEcCCeEEE
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL 306 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~---~~~~~~l~~~~~dg~i~v 306 (509)
..|.+++-... ..|+.+ .+|+|-+|+-... ..+ .+. +..++++.+. .+|..-|++|=.+|.|-+
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR--------iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR--------IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee--------ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 45777776665 567777 9999999976432 221 111 2234555443 344457889888887753
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.59 E-value=0.006 Score=37.09 Aligned_cols=30 Identities=17% Similarity=0.474 Sum_probs=27.8
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEecc
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQ 149 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~ 149 (509)
..|..+.| +|...+||.+..+|.|.+++++
T Consensus 12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence 67999999 8999999999999999999994
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.48 E-value=1 Score=44.40 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=21.5
Q ss_pred ceEEEeeCCCeEEEEeccchhhhhhh
Q 043890 132 ALFLLSTNDKTIKFWKVQEKKVKKIA 157 (509)
Q Consensus 132 ~~l~s~~~dg~i~vwd~~~~~~~~~~ 157 (509)
..++.++.++.|.-+|.++++.+...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee
Confidence 57888888999999999999866553
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.46 E-value=1.3 Score=45.43 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=104.8
Q ss_pred CCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC--------------CeEEEE
Q 043890 242 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------------GSIRLI 307 (509)
Q Consensus 242 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d--------------g~i~vw 307 (509)
...|+.+..+.+++.-++.-+.+.. .+ -........+++.+.. .++++.+.. ..++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~i------rt-vpl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHI------RT-VPLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcce------ee-ecCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 3457777777888887765332211 11 1123445667777743 455544331 136677
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEEec----------C-CeEEEEECCCCCCceEE
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 375 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~----------~-~~i~iwd~~~~~~~~~~ 375 (509)
|-++-+. +..++... .+....|.++.|..| +.+++.|+ . |.|.||.+.. ...++.
T Consensus 756 D~nTf~v-------l~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEV-------LSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeE-------Eeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 7666442 11111100 011235667778877 77777762 1 6788887775 344443
Q ss_pred EeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcc
Q 043890 376 FQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSL 455 (509)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 455 (509)
...+.-. .. ++++.. -+|++|| +-+..|++|+..+++.+. .-..+..++..+.....++...+
T Consensus 823 v~e~~v~----------Ga---v~aL~~-fngkllA--~In~~vrLye~t~~~eLr-~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVK----------GA---VYALVE-FNGKLLA--GINQSVRLYEWTTERELR-IECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeec----------cc---eeehhh-hCCeEEE--ecCcEEEEEEccccceeh-hhhcccCCeEEEEEEecCcEEEE
Confidence 3322111 00 012211 3677765 567789999999988887 77788889999988888887766
Q ss_pred cceeeEe
Q 043890 456 SSITRVV 462 (509)
Q Consensus 456 ~~~~~~~ 462 (509)
+++.+.+
T Consensus 886 gDlm~Si 892 (1096)
T KOG1897|consen 886 GDLMRSI 892 (1096)
T ss_pred eeccceE
Confidence 6665554
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.46 E-value=0.73 Score=42.54 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=74.7
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCC--ccceEEEEEeCCC---CcEEEEEEc---------C-CeEEEEECCCCccc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDL--TEVITSAEFHPTH---CNMLAYSSS---------K-GSIRLIDLRQSALC 315 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~---~~~l~~~~~---------d-g~i~vwd~~~~~~~ 315 (509)
..|++.|..+.+... .+ .+... -..+..+.+..+. ..+|++|+. . |.|.++++......
T Consensus 2 s~i~l~d~~~~~~~~-~~-----~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SF-----ELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp -EEEEEETTTSSEEE-EE-----EEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred cEEEEEeCCCCeEEE-EE-----ECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 357777777655432 22 22221 1222333343321 367777764 2 88999999984100
Q ss_pred CCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCc
Q 043890 316 DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSI 395 (509)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
...++...... ..++|.+++-- +++ |+++..+.|.+|++.. ...+...........
T Consensus 76 ~~~l~~i~~~~----------~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~-~~~l~~~~~~~~~~~----------- 131 (321)
T PF03178_consen 76 NFKLKLIHSTE----------VKGPVTAICSF-NGR-LVVAVGNKLYVYDLDN-SKTLLKKAFYDSPFY----------- 131 (321)
T ss_dssp --EEEEEEEEE----------ESS-EEEEEEE-TTE-EEEEETTEEEEEEEET-TSSEEEEEEE-BSSS-----------
T ss_pred ceEEEEEEEEe----------ecCcceEhhhh-CCE-EEEeecCEEEEEEccC-cccchhhheecceEE-----------
Confidence 00122221111 23678888766 444 6666669999999996 342333222222111
Q ss_pred cceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 396 FDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 396 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
..+....+++++.|..-..+.++..+
T Consensus 132 ----i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 132 ----ITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp ----EEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred ----EEEEeccccEEEEEEcccCEEEEEEE
Confidence 33444456799999988888887554
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.018 Score=58.41 Aligned_cols=102 Identities=13% Similarity=0.217 Sum_probs=73.8
Q ss_pred cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCC
Q 043890 293 NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSG 371 (509)
Q Consensus 293 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~ 371 (509)
..++.|+..|.+...|++..- ..+.... .-.++|++++|+.+|++++.| .+|.|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL------~~~~~ne---------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL------GPLHQNE---------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc------chhhcCC---------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 578899999999999988642 1111000 012689999999999999998 569999999996 78
Q ss_pred ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 372 PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
+++.+..+..+.+ .|..+.+..++..++++...|. +|++
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8888887765543 2335666677777888877776 4554
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.39 E-value=1.4 Score=45.06 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=54.1
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccC----------CCc--eeeEeeccCCcc-CCCccceEEEEEeCCC--CcEE
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEI----------SNQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 295 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~----------~~~--~~~~~~~~~~~~-~~~~~~i~~l~~~~~~--~~~l 295 (509)
..|..|.++|+|.+++......|.|-.+.. ++. ..+.+.+...-+ ..+...|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468899999999999887334455544432 111 111121111111 2345688999999974 3688
Q ss_pred EEEEcCCeEEEEECCCCc
Q 043890 296 AYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 296 ~~~~~dg~i~vwd~~~~~ 313 (509)
++-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 889999999999997544
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.38 E-value=0.53 Score=47.05 Aligned_cols=77 Identities=9% Similarity=0.116 Sum_probs=41.9
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEE---EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRL---IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
....|..+.|+||| ..++... ++.|.+ -....+.......+.+. .+....+.++.|..++.+++
T Consensus 446 ~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-----------~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 446 VPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-----------PGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred cCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEee-----------cccCCccccceEecCCEEEE
Confidence 35679999999999 6555544 467766 33333321000011111 11113357899999999765
Q ss_pred EecCCeEEEEECC
Q 043890 355 SRDYMTLKLWDIN 367 (509)
Q Consensus 355 s~~~~~i~iwd~~ 367 (509)
...++.-.+|.+.
T Consensus 513 ~~~~~~~~v~~v~ 525 (591)
T PRK13616 513 GRSDPEHPVWYVN 525 (591)
T ss_pred EecCCCCceEEEe
Confidence 5443333445444
No 379
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.33 E-value=0.2 Score=42.61 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred EEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEE
Q 043890 285 AEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKL 363 (509)
Q Consensus 285 l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~i 363 (509)
+...++...+++.|+..+.+.--|..++++.++.+- . ..|.+-+.- -|.+++.|-+ |.+++
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~il--g---------------~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--G---------------VRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhh--C---------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 334455557888999999999999999986543221 1 122222221 3667777765 99999
Q ss_pred EECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 364 WDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 364 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
.+..+ +.....+...+.... .....+++..+..|+.|++.+..|.++..++. ..+
T Consensus 78 l~~~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cVy-ksk 132 (354)
T KOG4649|consen 78 LCVKT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY-KSK 132 (354)
T ss_pred EEecc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceEE-ecc
Confidence 99998 556655554332211 45677899999999999999999999877776 444
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.24 E-value=0.96 Score=45.27 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=43.7
Q ss_pred ccCeEEEEECCCCCEEEEEcCCeEEE---EEccCCCceeeEeeccCCccC-CCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 230 DYHINSISNNSDGETFISADDLRINL---WNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
...|..+.|+|||..++...++.|++ -....+. ..+. .+..+. .....+.++.|..++ . |+++..++...
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~--~~~~l~~~l~~~~~~l~W~~~~-~-L~V~~~~~~~~ 520 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALT--NPREVGPGLGDTAVSLDWRTGD-S-LVVGRSDPEHP 520 (591)
T ss_pred CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeec--ccEEeecccCCccccceEecCC-E-EEEEecCCCCc
Confidence 34589999999999988875577777 3333332 2221 111222 223346789999997 5 44555554444
Q ss_pred EEEC
Q 043890 306 LIDL 309 (509)
Q Consensus 306 vwd~ 309 (509)
+|.+
T Consensus 521 v~~v 524 (591)
T PRK13616 521 VWYV 524 (591)
T ss_pred eEEE
Confidence 5543
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.1 Score=49.08 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=67.0
Q ss_pred EEE-cCCeEEEEEccCCCc-eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeec
Q 043890 246 ISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFE 323 (509)
Q Consensus 246 ~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 323 (509)
+.| +|..|.-||++-... .+... ....+ .......|++-..+| ++++|+.+|.|++||- .+.. .+
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~--q~kqy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~----AK--- 464 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVV--QSKQY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRR----AK--- 464 (644)
T ss_pred EEeecCCceEEecccccCcceeeee--ecccc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhh----hh---
Confidence 345 889999999985443 11110 00111 123456677777776 8999999999999996 3321 11
Q ss_pred cccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECC
Q 043890 324 EQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDIN 367 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 367 (509)
..+++...+|..+..+.||+++++..+..+.+-++.
T Consensus 465 --------TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 465 --------TALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred --------hcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 123334478999999999999998777777777764
No 382
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.11 E-value=0.32 Score=48.17 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=74.4
Q ss_pred CeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe--CCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~l~~~~~dg~i~vwd 308 (509)
...-+.-+.-++..++- +...+.|||.+.+...++ ..+ ...+.|..+.|. |++ +.+++.+..+.|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~------~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE------ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe------eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEE
Confidence 34444445555554445 677899999987653222 122 457889999986 676 6777777888888885
Q ss_pred CC-----CCcccCCceeeeccccCCCCcccccccc-ccEEEEEEecCCCEEEEecCCeEEEEECCC
Q 043890 309 LR-----QSALCDSHAILFEEQEAPGSRSFFTEII-ASISDIKFAKDGRHILSRDYMTLKLWDINM 368 (509)
Q Consensus 309 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 368 (509)
-. .....+.+++.+... .|+ .+|.+..|.++|.++++++ +.+.|+|-..
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~----------~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~~ 157 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDIS----------SHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKWL 157 (631)
T ss_pred ccchhhhcCCcccceeEEEEee----------cCCCCCccceeEecCCeEEEEeC-CEEEEECCCc
Confidence 42 222222333333322 122 4788999999998777655 7889987543
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.02 E-value=0.28 Score=48.55 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=67.5
Q ss_pred EEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeEEE--cCCCCEEEEeeCC
Q 043890 341 ISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFECCL--SGDGLRVATGSYS 416 (509)
Q Consensus 341 i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d 416 (509)
+.-+.-+.-++..++-++ ..+.|||.+. ......-. .....+ .++.| .|+++.+++.+-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I---------------~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPI---------------RDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeeecCCCce---------------eeceeeecCCCCEEEEEEcC
Confidence 344444445565555444 8999999986 33221111 111221 26666 4799999999999
Q ss_pred CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEE
Q 043890 417 NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
+.|.+|--....... ....-.++..+..+.- ...+|.+..|.++| .|
T Consensus 96 ~~v~l~~Q~R~dy~~--~~p~w~~i~~i~i~~~------------------------------T~h~Igds~Wl~~G-~L 142 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTN--KGPSWAPIRKIDISSH------------------------------TPHPIGDSIWLKDG-TL 142 (631)
T ss_pred cEEEEEEccchhhhc--CCcccceeEEEEeecC------------------------------CCCCccceeEecCC-eE
Confidence 999998643211110 0000112222222110 02568899999999 55
Q ss_pred EEEecCceEEEe
Q 043890 497 ACAAANSLYMYY 508 (509)
Q Consensus 497 a~~~~~~i~v~~ 508 (509)
++|+++.++||+
T Consensus 143 vV~sGNqlfv~d 154 (631)
T PF12234_consen 143 VVGSGNQLFVFD 154 (631)
T ss_pred EEEeCCEEEEEC
Confidence 667778888885
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=0.42 Score=40.14 Aligned_cols=137 Identities=9% Similarity=0.080 Sum_probs=77.6
Q ss_pred ccCeEEEEECCCCCEEEEE-cC---------CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE
Q 043890 230 DYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 299 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~-~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~ 299 (509)
....+.-..+|+|++++.. .| |.++.|-....-. .+...-.--+.++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~----------~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE----------LIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce----------eeehhccCCccccccccCcEEEEEcc
Confidence 3445666788999996644 32 4444443331110 11111222357899988755666667
Q ss_pred cCCeEEEEE--CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEE
Q 043890 300 SKGSIRLID--LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATF 376 (509)
Q Consensus 300 ~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~ 376 (509)
.+-+|.-|| ..++.+... -..++....... ++ ...-.++...+|.+.++.- .++|.-+|..+ ++.+..+
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~-----e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPF-----ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCCCc-----CC-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence 788898888 566653221 112222111000 00 1123345566788777764 49999999997 7888888
Q ss_pred eecccccc
Q 043890 377 QVHEYLRP 384 (509)
Q Consensus 377 ~~~~~~~~ 384 (509)
+.....++
T Consensus 250 klPt~qit 257 (310)
T KOG4499|consen 250 KLPTPQIT 257 (310)
T ss_pred EcCCCceE
Confidence 87755544
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.24 Score=50.83 Aligned_cols=70 Identities=19% Similarity=0.384 Sum_probs=52.1
Q ss_pred CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC
Q 043890 51 TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN 130 (509)
Q Consensus 51 ~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 130 (509)
.+..++.|++.|.+-..|....-. .-.++ ....++|++++| +.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~------------------------~~~~n----------e~v~~~Vtsvaf--n~d 141 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG------------------------PLHQN----------ERVQGPVTSVAF--NQD 141 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc------------------------hhhcC----------CccCCcceeeEe--cCC
Confidence 456788888888888888765422 00011 112278999999 999
Q ss_pred CceEEEeeCCCeEEEEeccchhhhhh
Q 043890 131 GALFLLSTNDKTIKFWKVQEKKVKKI 156 (509)
Q Consensus 131 ~~~l~s~~~dg~i~vwd~~~~~~~~~ 156 (509)
|..++.|-.+|.|.+||+..++..+.
T Consensus 142 g~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 142 GSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CceeccccCCCcEEEEEccCCcceee
Confidence 99999999999999999998876554
No 386
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.86 E-value=1.5 Score=40.56 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=72.9
Q ss_pred ccCeEEEEECCCC-CEEEEE-c---CCe-EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE----
Q 043890 230 DYHINSISNNSDG-ETFISA-D---DLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---- 299 (509)
Q Consensus 230 ~~~v~~i~~~~~~-~~l~~~-~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~---- 299 (509)
...+.-+.|+|.. .+++-| + +.. -+||-+++.......+ .-......+..=-|.|+|..+...+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v-----~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV-----HRRMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES-----S---TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee-----ecCCCCcccccccccCCCCEEEEEeecCCC
Confidence 3456678888864 445555 2 332 3677776544322211 11112345556678999944444333
Q ss_pred cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE-ecC--C--------------eEE
Q 043890 300 SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS-RDY--M--------------TLK 362 (509)
Q Consensus 300 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~--~--------------~i~ 362 (509)
.+..|.-+|+.+++. +.+... ....-+..++||++++. |+| . -|+
T Consensus 262 ~~~~i~~~d~~t~~~-----~~~~~~-------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 262 QDFWIAGYDPDTGER-----RRLMEM-------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp --EEEEEE-TTT--E-----EEEEEE--------------SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CceEEEeeCCCCCCc-----eEEEeC-------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 234577778887652 111111 13445667789998876 433 1 456
Q ss_pred EEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeC
Q 043890 363 LWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGC 424 (509)
Q Consensus 363 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 424 (509)
++++.. .....+..|......+.. +....-+ ...|+|||++++-.+ ..|...||-+
T Consensus 324 ~~~~~~--~~~~~l~~h~~sw~v~~~--~~q~~hP--hp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVEA--GRFRKLARHDTSWKVLDG--DRQVTHP--HPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETTT--TEEEEEEE-------BTT--BSSTT------EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred Eecccc--CceeeeeeccCcceeecC--CCccCCC--CCccCCCCCEEEEECCCCCCccEEEE
Confidence 677764 233333334311000000 0000000 689999999877554 5777777644
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.72 E-value=1.8 Score=40.52 Aligned_cols=172 Identities=13% Similarity=0.036 Sum_probs=74.3
Q ss_pred EEECCCCCEEEEE-c------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc--------
Q 043890 236 ISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------- 300 (509)
Q Consensus 236 i~~~~~~~~l~~~-~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-------- 300 (509)
+..-|+|+.++++ . -|-+.++|-++.+..-.. . .-......-..+-|.|.. +.++++..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W-e----~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~ 208 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRW-E----KDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEK 208 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE-------SB-TT------EEEETTT-TEEEE-B---HHHHTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCcccccccee-c----cCCCCCCCCCCeEEcCCC-CEEEEeccCChhhccc
Confidence 3445789888886 3 256777777654432211 0 111122344677888886 88887643
Q ss_pred ------------CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--CCEEEEe--cCCeEEEE
Q 043890 301 ------------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--GRHILSR--DYMTLKLW 364 (509)
Q Consensus 301 ------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~--~~~~i~iw 364 (509)
...+.+||+.+.+. +++++..+. ......+.|..+ ..+=+++ -..+|..|
T Consensus 209 Gf~~~d~~~~~yG~~l~vWD~~~r~~----~Q~idLg~~----------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 209 GFNPEDLEAGKYGHSLHVWDWSTRKL----LQTIDLGEE----------GQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp ---TTTHHHH-S--EEEEEETTTTEE----EEEEES-TT----------EEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred CCChhHhhcccccCeEEEEECCCCcE----eeEEecCCC----------CCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 35799999999875 455554321 123556777653 4443333 23445544
Q ss_pred ECCCCCCc--eEEEeeccc----cc-ccc-cccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCCCCce
Q 043890 365 DINMDSGP--VATFQVHEY----LR-PKL-CDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCAPGST 429 (509)
Q Consensus 365 d~~~~~~~--~~~~~~~~~----~~-~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~ 429 (509)
--...+.. .+.+..... +. ..+ ..+...-.+ ++++..|.|.++|.... ..|.|+.||+..-..
T Consensus 275 ~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L--itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 275 YKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL--ITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc--eEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 33222221 111111111 10 000 000000000 23889999999998776 489999999986433
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.68 E-value=1.3 Score=38.60 Aligned_cols=171 Identities=14% Similarity=0.089 Sum_probs=92.8
Q ss_pred eeeeeecccccCeEEEEECCCCCEEEEE---cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEE
Q 043890 221 CRRVYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 297 (509)
Q Consensus 221 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~ 297 (509)
..+.+......-...+.|..+|.++-+. ....|+.+|+.+++..... .+.+ ..---.+....+ ++..-
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~------~~FgEGit~~~d--~l~qL 105 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP------RYFGEGITILGD--KLYQL 105 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT------T--EEEEEEETT--EEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc------cccceeEEEECC--EEEEE
Confidence 3344423333445678886777666654 3568999999987644321 1111 111123444443 45555
Q ss_pred EEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEE
Q 043890 298 SSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATF 376 (509)
Q Consensus 298 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~ 376 (509)
.=.++...+||..+-+. +..+.-. +.=..++ .|++.|+.++ ...++++|..+ .+....+
T Consensus 106 TWk~~~~f~yd~~tl~~----~~~~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i 165 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKK----IGTFPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTI 165 (264)
T ss_dssp ESSSSEEEEEETTTTEE----EEEEE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEE
T ss_pred EecCCeEEEEccccceE----EEEEecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEE
Confidence 56788999999987654 3444322 2235555 4566666554 48999999886 5555555
Q ss_pred eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 377 QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
...... .++..+..+.|- +|...|=.-....|...|..+|+.+.
T Consensus 166 ~V~~~g----------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 166 QVTDNG----------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp E-EETT----------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred EEEECC----------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 443221 112222356664 66666655566678888888888776
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=1.5 Score=38.44 Aligned_cols=180 Identities=7% Similarity=0.076 Sum_probs=98.4
Q ss_pred cccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 227 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
.+-...+.++.|+|+.+.|.+. +...-.++ +.+...+++.+ .+.+ -...-++.+..++ ++.++--.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~Gdlirti-----PL~g-~~DpE~Ieyig~n-~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTI-----PLTG-FSDPETIEYIGGN-QFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEe-----cccc-cCChhHeEEecCC-EEEEEehhcceEE
Confidence 3444559999999999988887 54444444 33334444433 2332 2234567888887 7777777789999
Q ss_pred EEECCCCcccCCcee-eeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCce--EEEeeccc
Q 043890 306 LIDLRQSALCDSHAI-LFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEY 381 (509)
Q Consensus 306 vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~--~~~~~~~~ 381 (509)
++.+........... .+...... .-+.+.-.++|+|.++.|..+.. +-+.||.+......+ .....+..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~-------k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTN-------KKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEEEcCCccEEeccceEEeccccC-------CCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 888776642111000 11111111 11357888999998887777754 556666554311111 11111111
Q ss_pred ccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
. .+++ +..|..+.|++ .+.+|+.+.+++.+.-.|.. |..+
T Consensus 227 ~----~~~f----~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~ 267 (316)
T COG3204 227 D----RDLF----VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVI 267 (316)
T ss_pred c----cceE----eeccccceecCCCCcEEEEecCCceEEEEecC-CCee
Confidence 1 0111 11223677876 45566666677777766665 4433
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.48 E-value=1.9 Score=39.14 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=56.9
Q ss_pred ccceEEEEEeCCCCcEEEEEEc-CCeEEEEECCC--CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 279 TEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLRQ--SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
-..-+.|+|+||+ +.|..+.. .+.|.-|++.. +.........+ +....+..-.++...+|.+-++
T Consensus 162 ~~~~NGla~SpDg-~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----------~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 162 LTIPNGLAFSPDG-KTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----------FDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred EEecCceEECCCC-CEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----------ccCCCCCCCceEEeCCCCEEEe
Confidence 4455789999999 66666655 58888888763 22111100111 1112255667888889998865
Q ss_pred ec-C-CeEEEEECCCCCCceEEEeeccccc
Q 043890 356 RD-Y-MTLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 356 ~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
+. . +.|.+|+.. ++++..+..+....
T Consensus 230 a~~~g~~v~~~~pd--G~l~~~i~lP~~~~ 257 (307)
T COG3386 230 AVWGGGRVVRFNPD--GKLLGEIKLPVKRP 257 (307)
T ss_pred cccCCceEEEECCC--CcEEEEEECCCCCC
Confidence 43 3 499999988 57777777664433
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.44 E-value=0.82 Score=44.05 Aligned_cols=152 Identities=8% Similarity=0.116 Sum_probs=82.7
Q ss_pred ccceEEEEEeCCCCcEEEEEE--cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC----C-C
Q 043890 279 TEVITSAEFHPTHCNMLAYSS--SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD----G-R 351 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~-~ 351 (509)
-.++..++|.... +.+.+.- .+|.+++=|-+. +..| .-|..+.|.|- - .
T Consensus 19 iHPvhGlaWTDGk-qVvLT~L~l~~gE~kfGds~v-------iGqF----------------EhV~GlsW~P~~~~~~pa 74 (671)
T PF15390_consen 19 IHPVHGLAWTDGK-QVVLTDLQLHNGEPKFGDSKV-------IGQF----------------EHVHGLSWAPPCTADTPA 74 (671)
T ss_pred hccccceEecCCC-EEEEEeeeeeCCccccCCccE-------eecc----------------ceeeeeeecCcccCCCCc
Confidence 4578899996543 5555543 244444333221 1112 35899999984 2 4
Q ss_pred EEEEecCCeEEEEECCCC----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC-
Q 043890 352 HILSRDYMTLKLWDINMD----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP- 426 (509)
Q Consensus 352 ~l~s~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~- 426 (509)
+||.--...|.||.+... .+.+..-..+ +.....+.. ..+.|+|....|+.-.....-.++++..
T Consensus 75 LLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e~~pvLp-------QGCVWHPk~~iL~VLT~~dvSV~~sV~~d 144 (671)
T PF15390_consen 75 LLAVQHKKHVTVWQLCPSTTERNKLLMSQTCE---IREPFPVLP-------QGCVWHPKKAILTVLTARDVSVLPSVHCD 144 (671)
T ss_pred eEEEeccceEEEEEeccCccccccceeeeeee---ccCCcccCC-------CcccccCCCceEEEEecCceeEeeeeeeC
Confidence 666666689999998631 1222211111 100000000 1678999988887766554444555542
Q ss_pred CceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCc--e
Q 043890 427 GSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANS--L 504 (509)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~--i 504 (509)
+..++ .|+++ .+.|.|.+|.+||+.|+++-++. -
T Consensus 145 ~srVk---------------------------------------aDi~~-----~G~IhCACWT~DG~RLVVAvGSsLHS 180 (671)
T PF15390_consen 145 SSRVK---------------------------------------ADIKT-----SGLIHCACWTKDGQRLVVAVGSSLHS 180 (671)
T ss_pred CceEE---------------------------------------EeccC-----CceEEEEEecCcCCEEEEEeCCeEEE
Confidence 22222 22222 25688888888888887776643 4
Q ss_pred EEEe
Q 043890 505 YMYY 508 (509)
Q Consensus 505 ~v~~ 508 (509)
|+|+
T Consensus 181 yiWd 184 (671)
T PF15390_consen 181 YIWD 184 (671)
T ss_pred EEec
Confidence 5554
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.42 E-value=0.093 Score=30.87 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=24.4
Q ss_pred cEEEEEEecCC---CEEEEecC-CeEEEEECCC
Q 043890 340 SISDIKFAKDG---RHILSRDY-MTLKLWDINM 368 (509)
Q Consensus 340 ~i~~~~~s~~~---~~l~s~~~-~~i~iwd~~~ 368 (509)
.+.++.|+|+. .+|+.+.+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58999999854 48888876 9999999995
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.17 E-value=1.8 Score=40.81 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=39.4
Q ss_pred cceEEEEEeCCCCcEEEEEE-----------cCC-eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 280 EVITSAEFHPTHCNMLAYSS-----------SKG-SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.....|+|.++| +++++-. ..+ .|.+++-..+.-.......+...- .....+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l------------~~p~Gi~~~ 80 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL------------SMVTGLAVA 80 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC------------CCccceeEe
Confidence 345689999998 7666542 123 676666543322211123332211 345788999
Q ss_pred cCCCEEEEecCCeEEEE-ECC
Q 043890 348 KDGRHILSRDYMTLKLW-DIN 367 (509)
Q Consensus 348 ~~~~~l~s~~~~~i~iw-d~~ 367 (509)
++| ++++. ...|..| |..
T Consensus 81 ~~G-lyV~~-~~~i~~~~d~~ 99 (367)
T TIGR02604 81 VGG-VYVAT-PPDILFLRDKD 99 (367)
T ss_pred cCC-EEEeC-CCeEEEEeCCC
Confidence 988 55543 3445444 554
No 394
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.17 E-value=3.2 Score=39.94 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=39.6
Q ss_pred EEEECCCCCEEEEE--cC----------CeEEEEEccCCCceeeEeeccCCccCCCc--cceEEEEEeCCCCcEEEEE-E
Q 043890 235 SISNNSDGETFISA--DD----------LRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYS-S 299 (509)
Q Consensus 235 ~i~~~~~~~~l~~~--~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~~-~ 299 (509)
.+.|.++++.|+.. .+ ..|+.|.+.+....-.+ .+.... .....+..++++ ++++.. .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~l------vfe~~~~~~~~~~~~~s~d~-~~l~i~~~ 246 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDEL------VFEEPDEPFWFVSVSRSKDG-RYLFISSS 246 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EE------EEC-TTCTTSEEEEEE-TTS-SEEEEEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCee------EEeecCCCcEEEEEEecCcc-cEEEEEEE
Confidence 38999998776544 22 23777777765432111 122222 225688899998 665543 3
Q ss_pred cC---CeEEEEECCCC
Q 043890 300 SK---GSIRLIDLRQS 312 (509)
Q Consensus 300 ~d---g~i~vwd~~~~ 312 (509)
.. ..+.+.|+...
T Consensus 247 ~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 247 SGTSESEVYLLDLDDG 262 (414)
T ss_dssp SSSSEEEEEEEECCCT
T ss_pred ccccCCeEEEEecccc
Confidence 32 34777888765
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.14 E-value=1.6 Score=38.64 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=86.1
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE-
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd- 308 (509)
.+.+.+++++++.++.. .++.-.+|-...+..... .+ ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-------~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-------VL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-------ec--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 57889999999877654 355555555554443221 11 23377888999997 6666666666666663
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----CCeEEEEECCCCCCc-eEEEeeccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEYLR 383 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~-~~~~~~~~~~~ 383 (509)
...+... ........ -...|.++.+||||..++.-. ++.|.+--+.....- ...+.......
T Consensus 95 ~~~g~~~---~~~v~~~~----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGE---PVEVDWPG----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcce---eEEecccc----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 3333321 11111111 002799999999999887642 477877765431111 11111100000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
. .....+.++.|.+++.+++.+...+
T Consensus 162 ~--------~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 P--------PLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred c--------cccCcceeeeecCCCEEEEEeCCCC
Confidence 0 0011233899999998877766543
No 396
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.98 E-value=2.7 Score=42.40 Aligned_cols=75 Identities=7% Similarity=0.155 Sum_probs=51.2
Q ss_pred ccCeEEEEEC--CCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCC--Cc---EEEEEEcC
Q 043890 230 DYHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSK 301 (509)
Q Consensus 230 ~~~v~~i~~~--~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~---~l~~~~~d 301 (509)
...+++++++ ...+++|++ ....|.||-.......... .....+...|-+|+|-++. +. .+++++-.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 3468889998 778889988 7777888766542211100 0122366788899998764 22 78888999
Q ss_pred CeEEEEEC
Q 043890 302 GSIRLIDL 309 (509)
Q Consensus 302 g~i~vwd~ 309 (509)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99988887
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.93 E-value=2.8 Score=37.90 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=77.4
Q ss_pred cccCeEEEEECCCCCEEEEEcCCe-EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 229 HDYHINSISNNSDGETFISADDLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
-...+..+..+++|++++++..|. ..-||.-...... ........|.++.|.|++ .+.+. ...|.|++=
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~--------~~r~~~~riq~~gf~~~~-~lw~~-~~Gg~~~~s 212 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP--------HNRNSSRRIQSMGFSPDG-NLWML-ARGGQIQFS 212 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE--------EE--SSS-EEEEEE-TTS--EEEE-ETTTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE--------EccCccceehhceecCCC-CEEEE-eCCcEEEEc
Confidence 345688888899999999995444 4566654321111 112246789999999997 55454 488888888
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
+.... ...+..+..+... -.-.+..++|.+++...++|+.|.+. .... .++.-+....-.....
T Consensus 213 ~~~~~------~~~w~~~~~~~~~-----~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~D-gGktW~~~~~~~~~~~--- 276 (302)
T PF14870_consen 213 DDPDD------GETWSEPIIPIKT-----NGYGILDLAYRPPNEIWAVGGSGTLL-VSTD-GGKTWQKDRVGENVPS--- 276 (302)
T ss_dssp E-TTE------EEEE---B-TTSS-------S-EEEEEESSSS-EEEEESTT-EE-EESS-TTSS-EE-GGGTTSSS---
T ss_pred cCCCC------ccccccccCCccc-----CceeeEEEEecCCCCEEEEeCCccEE-EeCC-CCccceECccccCCCC---
Confidence 72221 1223222111100 01358999999999999988766443 3334 2444443332111110
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEE
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
. ++.+.|..+.+-++ .+.+|.|.=|
T Consensus 277 ------n---~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 277 ------N---LYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp ------------EEEEEETTEEEE-E-STTEEEEE
T ss_pred ------c---eEEEEEcCCCceEE-ECCCcEEEEe
Confidence 1 12778866555554 5667776544
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.87 E-value=0.83 Score=46.67 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC-CceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcc
Q 043890 393 DSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP-GSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGV 471 (509)
Q Consensus 393 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 471 (509)
...+.|..+.++|+|++||..|..|. .|-.+.. .-... .+++....+.+-.+.- +..+.
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~-~~~~g~~~i~Crt~~v----------------~~~~~-- 141 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNG-EFEDGKKEINCRTVPV----------------DERFF-- 141 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccc-cccCCCcceeEEEEEe----------------chhhc--
Confidence 44566779999999999999888654 4444431 11111 2222222222221111 11110
Q ss_pred cCCCcccccccceEEEEEcCCC---cE-EEEEecCceEEEeC
Q 043890 472 DTNGNSFDFTTKLLHLAWHPTE---NS-IACAAANSLYMYYA 509 (509)
Q Consensus 472 ~~~~~~~~~~~~i~~~~~~p~~---~~-la~~~~~~i~v~~~ 509 (509)
.....-.|.++.|||.+ .. ++-.+++.+++|+.
T Consensus 142 -----~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 142 -----TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred -----cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 00113578999999984 44 44555599999974
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.40 E-value=0.19 Score=29.63 Aligned_cols=33 Identities=21% Similarity=0.591 Sum_probs=27.6
Q ss_pred cceEEEEEeCCCC--cEEEEEEcCCeEEEEECCCC
Q 043890 280 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 280 ~~i~~l~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 312 (509)
+.|.++.|+|... .+|+.+-..+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3688999998763 58999988999999999963
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.31 E-value=0.16 Score=42.36 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=76.6
Q ss_pred EEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeec
Q 043890 244 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFE 323 (509)
Q Consensus 244 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 323 (509)
++++..+|.|.-++++.-+...+ ...-+...-.-+.+ ..-++.|+.+|.|.+|........ ...+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-------se~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~---~d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-------SERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAH---SDRVC 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-------hhhhhhcceeeccc----CceEEeecccceEEEecCCccchH---HHhhh
Confidence 44555788888887775432221 11112222111112 267999999999999988733211 01111
Q ss_pred cccCCCCccccccccccEEEE-EEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeeccc-ccccccccccCCCccceee
Q 043890 324 EQEAPGSRSFFTEIIASISDI-KFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEY-LRPKLCDLYENDSIFDKFE 400 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~ 400 (509)
... ..|.++ .-..++.+..++ .++.|+.|++.- .+.+.....|+. ... .
T Consensus 99 s~~------------e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e---------------~ 150 (238)
T KOG2444|consen 99 SGE------------ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGE---------------E 150 (238)
T ss_pred ccc------------ccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCCcc---------------e
Confidence 100 122222 222234455554 579999999984 666655555542 111 3
Q ss_pred EEEcCCCCEEEEe--eCCCcEEEEeCCC
Q 043890 401 CCLSGDGLRVATG--SYSNLFRVFGCAP 426 (509)
Q Consensus 401 ~~~s~~~~~l~~~--~~dg~i~iw~~~~ 426 (509)
...+..+++|+.+ +.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 4445556677777 7777888888763
No 401
>PHA02713 hypothetical protein; Provisional
Probab=94.21 E-value=0.99 Score=45.17 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=23.6
Q ss_pred CCCEEEEeeCCC--cEEEEeCCCCceeeeeeccCC
Q 043890 406 DGLRVATGSYSN--LFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 406 ~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~ 438 (509)
+++..++|+.|+ .+..||..+.+... .-..|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~-~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNH-ICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccc-hhhhcC
Confidence 788888999888 78888888776654 444443
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.15 E-value=0.33 Score=40.64 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=37.5
Q ss_pred CCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc-cceEEEEEeCCCCcEEEEE--EcCCeEEEEECCC
Q 043890 239 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYS--SSKGSIRLIDLRQ 311 (509)
Q Consensus 239 ~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~~--~~dg~i~vwd~~~ 311 (509)
..++.+..++ .+|.|+.|++.-.+..- ....|. .++..+.....+ .+++.+ +.|..++.|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g--------~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLG--------YVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceee--------eeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 3455577777 89999999998665432 122343 344444444443 455555 5566666666554
No 403
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.03 E-value=2.1 Score=32.79 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=50.6
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
..-.|.....-|+.++.-|.|.|++.......... . -..++.+.....|++|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-----------------------~-----~~~i~~LNin~~ital 53 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-----------------------Q-----DSDISFLNINQEITAL 53 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccccc-----------------------c-----cCceeEEECCCceEEE
Confidence 34567777788999999999999998765431000 0 0012223333567777
Q ss_pred EEE---EcCCCceEEEeeCCCeEEEEeccchhhh
Q 043890 124 RWC---QTANGALFLLSTNDKTIKFWKVQEKKVK 154 (509)
Q Consensus 124 ~~~---~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 154 (509)
+-. +..+...|+.|+. ..+..||+....-.
T Consensus 54 aaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 54 AAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL 86 (136)
T ss_pred EEEecCCCCCcCEEEEecc-ceEEEEEcccCchh
Confidence 653 2233446666665 48999999877543
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.70 E-value=4.7 Score=35.65 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=41.8
Q ss_pred CeEEEEECCCCCEEEEE----cCCeEEEEEccCCCce-eeEeeccCCc-cCCCccceEEEEEeCCCCcEEEEEEcC
Q 043890 232 HINSISNNSDGETFISA----DDLRINLWNLEISNQS-FNIVDVKPAN-MEDLTEVITSAEFHPTHCNMLAYSSSK 301 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~----~dg~i~iwd~~~~~~~-~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~~~~d 301 (509)
.|..+.++|||..++.- .++.|.+--+.....- ..... .+.. .......+..+.|.+++ .+++.+...
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~-~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~ 186 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT-GPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSA 186 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec-cceEecccccCcceeeeecCCC-EEEEEeCCC
Confidence 79999999999987764 3677887765532211 00000 1111 12235688999999998 665555543
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.64 E-value=4.4 Score=38.21 Aligned_cols=113 Identities=9% Similarity=0.093 Sum_probs=56.1
Q ss_pred cCeEEEEECCCCCEEEEE-c-----------C-CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEE
Q 043890 231 YHINSISNNSDGETFISA-D-----------D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 297 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~-----------d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~ 297 (509)
.....|+|.++|+++++- . . ..|.+++-..+...... ...+...-.....+++.+++ ++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~----~~vfa~~l~~p~Gi~~~~~G--ly-V 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK----SNVFAEELSMVTGLAVAVGG--VY-V 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce----eEEeecCCCCccceeEecCC--EE-E
Confidence 346688999999988774 1 1 26777754332211100 01122222345789998886 33 3
Q ss_pred EEcCCeEEEEECCCCcccCCceeee-ccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 298 SSSKGSIRLIDLRQSALCDSHAILF-EEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 298 ~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
+......++.|.............+ ..-... ...+......++|.|||.+.++
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence 4444434444554332221011111 111000 0001235788999999987776
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=3.4 Score=43.33 Aligned_cols=101 Identities=10% Similarity=0.001 Sum_probs=67.0
Q ss_pred eEEEEECCCCCE-EEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 233 INSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 233 v~~i~~~~~~~~-l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
..++.|+|.-.. .++. .|+.|++..+....... .-.......++++|+|.| +.++.|-..|++.-|-..
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v--------~s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV--------TSFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhh--------cccCcccceeeEEecccc-ceeeEecCCCeEEEeecc
Confidence 456778776322 3444 88999988776443322 112345678999999999 999999999999988765
Q ss_pred CCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 311 QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
-.. .+.+....... ...|.+++|-....++++
T Consensus 229 lei-----k~~ip~Pp~~e--------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 LEI-----KSEIPEPPVEE--------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cce-----eecccCCCcCC--------CcceeEEEEecceeEEEE
Confidence 432 12222221110 257999999988888876
No 407
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.50 E-value=8.9 Score=38.92 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=89.4
Q ss_pred CCEEEEEcCCeEEEEEccCCCceee-----EeeccCCccC---------CCccceEEEEEeCCC-CcEEEEEEcCCeEEE
Q 043890 242 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANME---------DLTEVITSAEFHPTH-CNMLAYSSSKGSIRL 306 (509)
Q Consensus 242 ~~~l~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~v 306 (509)
.++++++..+.|+||+.+....... ....++.... .....|+.|....-+ ..+|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788888888999999875443211 0011111000 012345555444322 268999999999999
Q ss_pred EECCCCcccCCce-eeecc-ccCCCCcccc-ccccccEEEEEEe--cCCCEEEEecC-CeEEEEECCCCCCceEEEe--e
Q 043890 307 IDLRQSALCDSHA-ILFEE-QEAPGSRSFF-TEIIASISDIKFA--KDGRHILSRDY-MTLKLWDINMDSGPVATFQ--V 378 (509)
Q Consensus 307 wd~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~i~~~~~s--~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~--~ 378 (509)
|..+.--...+.. ...+. .........+ ..-...+++++++ ...+++|+++. ..|.||-+........... .
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 9764311000000 00000 0000000111 1123578999998 78888888876 7788876553111111110 1
Q ss_pred cccccccccccccCCCccceeeEEEcCCC-----C-EEEEeeCCCcEEEEeC
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDG-----L-RVATGSYSNLFRVFGC 424 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~-~l~~~~~dg~i~iw~~ 424 (509)
+...+. +++|-++. . .|++++-.|.+.+|++
T Consensus 209 ~~hNIP---------------~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIP---------------NVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccCCC---------------eeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 222222 77886543 2 7888899999999888
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.39 E-value=0.54 Score=40.33 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=51.3
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCccccc
Q 043890 401 CCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDF 480 (509)
Q Consensus 401 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
+.+..++.+|++.+.+|.+++||+.+++.+... ..-.|+-......+. ..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~----------------------------~~ 65 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDK----------------------------SS 65 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccC----------------------------CC
Confidence 446678999999999999999999988765411 011111110000000 01
Q ss_pred ccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 481 TTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 481 ~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
...|..+..+.+|.-+++-+++..|.|+.
T Consensus 66 ~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 66 SPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 36688888888888888888888888863
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.23 E-value=9.7 Score=37.89 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 406 DGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 406 ~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.+.+++.++.||.++.+|.++|+.+-
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeE
Confidence 45567778889999999999999886
No 410
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=1.3 Score=47.06 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=54.2
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCcee----eEeec--------c--CCccC-CCccceEEEEEeCCCCcEE
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSF----NIVDV--------K--PANME-DLTEVITSAEFHPTHCNML 295 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~----~~~~~--------~--~~~~~-~~~~~i~~l~~~~~~~~~l 295 (509)
..|+|+....+|+.|.+|.||.|+=.-.+...... +-+.+ - ...+. .+.++|..++....- +++
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~Il 257 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NIL 257 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-cee
Confidence 45889998889999999966654422222111000 00000 0 01223 567899999999886 899
Q ss_pred EEEEcCCeEEEEECCCCc
Q 043890 296 AYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 296 ~~~~~dg~i~vwd~~~~~ 313 (509)
.+-+..++|.+||+....
T Consensus 258 Y~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eeeccCceEEEEEccCCC
Confidence 999999999999998743
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.12 E-value=0.81 Score=39.24 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=51.7
Q ss_pred eCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECC
Q 043890 288 HPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDIN 367 (509)
Q Consensus 288 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 367 (509)
...+ .+|++-+.+|.+++||+.+.+.....+...+.-....... ......|..+.++.+|.-+++-++|..+.||..
T Consensus 19 ~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3445 7899999999999999999875433221111110000000 023367899999999998888777889999887
Q ss_pred C
Q 043890 368 M 368 (509)
Q Consensus 368 ~ 368 (509)
.
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 5
No 412
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.08 E-value=5.1 Score=37.08 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
..++|+|.|++ ++|+ +...|.|++++ ..+.. ...+..+. ............++++|+
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~-~~g~~-~~~v~~~~--------~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVD-KDGSL-KTPVADLP--------EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEE-TTTEE-CEEEEE-T--------TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEe-CCCcC-cceecccc--------cccccccCCcccceeccc
Confidence 35789999997 6655 56799999999 44432 11111111 011222357899999994
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.90 E-value=13 Score=38.60 Aligned_cols=104 Identities=11% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCccceeeEEEcCC-CCEEEEeeC----------CCcEEEEeCCCCceeeeeeccC--CCceeEEEEcCCCCCCccccee
Q 043890 393 DSIFDKFECCLSGD-GLRVATGSY----------SNLFRVFGCAPGSTEATTLEAS--KNPMRRQVQTPSRPSRSLSSIT 459 (509)
Q Consensus 393 ~~~~~v~~~~~s~~-~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~~~~~ 459 (509)
+....+.++.|..| +.+++.|.. .|.|.+|....+..+. ....+ .+.+.++..-...--..++...
T Consensus 772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~-~v~e~~v~Gav~aL~~fngkllA~In~~v 850 (1096)
T KOG1897|consen 772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE-LVAETVVKGAVYALVEFNGKLLAGINQSV 850 (1096)
T ss_pred ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee-eeeeeeeccceeehhhhCCeEEEecCcEE
Confidence 34444457778877 777777753 4789999887744333 22222 2333333222221112333445
Q ss_pred eEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 460 RVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
+.++-.... ..... ..+..++..+...-.+..+|+|.-
T Consensus 851 rLye~t~~~-eLr~e---~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 851 RLYEWTTER-ELRIE---CNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred EEEEccccc-eehhh---hcccCCeEEEEEEecCcEEEEeec
Confidence 554422220 00000 012344556666666666666654
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.89 E-value=0.16 Score=50.92 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=59.0
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEEEECC---CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+.+.+|++.--++....++.-.........+.-+.|.| +.-++..+ +++.|++.++.+.... -+..|
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~---------l~rsH 223 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS---------LFRSH 223 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH---------HHHhc
Confidence 34567776554444333322222233334456666655 45566667 7899999888754331 12335
Q ss_pred ccceEEE-----------EEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 279 TEVITSA-----------EFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 279 ~~~i~~l-----------~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
..++..+ ..+||| ..|+.+..||.+++|.+.
T Consensus 224 s~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 4443332 378998 999999999999988765
No 415
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.51 E-value=16 Score=38.43 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=28.4
Q ss_pred ccceEEEEECCCC------CeEEeecCCCeEEEEEccCCC
Q 043890 40 VDIISAIEFDKTG------DHLATGDRGGRVVLFERTDTK 73 (509)
Q Consensus 40 ~~~I~~v~~s~~~------~~la~g~~dg~i~lw~~~~~~ 73 (509)
...|.|+++.+++ ++++.|+.|+.+++..+.-..
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d 621 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD 621 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc
Confidence 4678899998864 789999999999999988443
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=1.8 Score=45.21 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=70.6
Q ss_pred ccceEEEEEeCCCCcEEEEEE--cCCeEEEEECCCCcccCCc-eeeeccccCCCCccccccccccEEEEEEecCCCEE--
Q 043890 279 TEVITSAEFHPTHCNMLAYSS--SKGSIRLIDLRQSALCDSH-AILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI-- 353 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-- 353 (509)
.-+|..+...+|+ ...++.. .+-.|..||++.-...... ...+..+ .+..+...-..++.|.|.-...
T Consensus 100 ~~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s------~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNS------ATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccc------cchhccccccccccccCCccchhh
Confidence 3456677777886 4444333 3347889999875421100 0111111 1111222345677888854433
Q ss_pred EEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 354 LSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 354 ~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+.-.|+.|++..+.........+.... . +++++|+|.|+.++.|-..|++.-|...
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~t~-~---------------~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPVTN-S---------------QTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCccc-c---------------eeeEEeccccceeeEecCCCeEEEeecc
Confidence 233568888877664222222222111 1 2389999999999999999999988765
No 417
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.13 E-value=3.9 Score=34.38 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=71.0
Q ss_pred EEEecCCCEEEEecCCeEEEEECCC-CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-----
Q 043890 344 IKFAKDGRHILSRDYMTLKLWDINM-DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN----- 417 (509)
Q Consensus 344 ~~~s~~~~~l~s~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 417 (509)
++-++.+.++++++...|.+|++.. ...++..+..- +. |..+.++..|+||+|--++.
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~---------------V~~l~y~~~GDYlvTlE~k~~~~~~ 86 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GR---------------VLQLVYSEAGDYLVTLEEKNKRSPV 86 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hh---------------eeEEEeccccceEEEEEeecCCccc
Confidence 3333433444445558899999983 23344455433 11 33899999999999875532
Q ss_pred -cEEEE---eCC--CCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC
Q 043890 418 -LFRVF---GCA--PGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP 491 (509)
Q Consensus 418 -~i~iw---~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 491 (509)
.+++| +.. ...++..++-||. ++ +..... .+..+...++ ....++.+++..|
T Consensus 87 ~fvR~Y~NWr~~~~~~~~v~vRiaG~~--v~-----~~~~~~----------~~~qleiiEl-----Pl~~~p~ciaCC~ 144 (215)
T PF14761_consen 87 DFVRAYFNWRSQKEENSPVRVRIAGHR--VT-----PSFNES----------SKDQLEIIEL-----PLSEPPLCIACCP 144 (215)
T ss_pred eEEEEEEEhhhhcccCCcEEEEEcccc--cc-----cCCCCc----------cccceEEEEe-----cCCCCCCEEEecC
Confidence 45664 222 2233333444442 00 000000 0000111111 2246789999999
Q ss_pred CCcEEEEEecCceEEEe
Q 043890 492 TENSIACAAANSLYMYY 508 (509)
Q Consensus 492 ~~~~la~~~~~~i~v~~ 508 (509)
..--|++|+.+.+.||.
T Consensus 145 ~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 145 VTGNLLVGCGNKLVLFT 161 (215)
T ss_pred CCCCEEEEcCCEEEEEE
Confidence 99899999999999985
No 418
>PHA02713 hypothetical protein; Provisional
Probab=92.12 E-value=11 Score=37.93 Aligned_cols=60 Identities=8% Similarity=0.055 Sum_probs=32.8
Q ss_pred cEEEEEEcC------CeEEEEECCC-CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CC--eEE
Q 043890 293 NMLAYSSSK------GSIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YM--TLK 362 (509)
Q Consensus 293 ~~l~~~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~--~i~ 362 (509)
++.+.|+.+ ..+..||..+ .+. ..+..+.... .....+.+ +|++.+.|+ ++ .+.
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W--~~~~~m~~~r------------~~~~~~~~--~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRYNTNTYNGW--ELITTTESRL------------SALHTILH--DNTIMMLHCYESYMLQD 528 (557)
T ss_pred EEEEEeCCCCCCccceeEEEecCCCCCCe--eEccccCccc------------ccceeEEE--CCEEEEEeeecceeehh
Confidence 677777754 2467899887 442 1122222111 12222222 677777775 34 788
Q ss_pred EEECCC
Q 043890 363 LWDINM 368 (509)
Q Consensus 363 iwd~~~ 368 (509)
.||..+
T Consensus 529 ~yd~~~ 534 (557)
T PHA02713 529 TFNVYT 534 (557)
T ss_pred hcCccc
Confidence 888876
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=91.95 E-value=10 Score=35.13 Aligned_cols=117 Identities=9% Similarity=0.000 Sum_probs=66.3
Q ss_pred ccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 230 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
...++++.+.++++.++++..|.+++=..+.+.....+ . .........+.++.+.+++ ..+ .++.+|.+.. ..
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~---~-~~~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~~-S~ 286 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP---I-IPEITNGYGYLDLAYRTPG-EIW-AGGGNGTLLV-SK 286 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc---c-CCccccccceeeEEEcCCC-CEE-EEcCCCeEEE-eC
Confidence 35688899999999888887777653223333221110 0 0001123457889999876 544 4556675543 33
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEEC
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDI 366 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~ 366 (509)
..++. ++ ...... .-......+.|..+++.+++|..|.|--|+-
T Consensus 287 d~G~t-W~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 287 DGGKT-WE---KDPVGE---------EVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCCC-Ce---ECCcCC---------CCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 43331 11 111000 0013577888888888888888888887764
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=5.8 Score=37.20 Aligned_cols=130 Identities=10% Similarity=0.039 Sum_probs=74.2
Q ss_pred EEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCc
Q 043890 234 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 313 (509)
+.+-|...++.+++...|.+.-|-+.....-.. +.--....++|.++.|++|. +.+|+--.+.+|.+++....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVp-----iSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVP-----ISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCC-----ceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 344454444444444555666676654332110 11112245699999999998 999999999999999874332
Q ss_pred ccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccc
Q 043890 314 LCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
... ....+. ..-...|....|+.+ .-+|.-.+..+.+|-.....+.++..+.+...
T Consensus 100 ~~l--~~~~~c----------k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~n 155 (657)
T KOG2377|consen 100 SQL--EYTQEC----------KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLN 155 (657)
T ss_pred hhh--HHHHHh----------ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccC
Confidence 110 011110 011246899999875 55665555557777665434445555544443
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.73 E-value=3.4 Score=39.37 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=51.2
Q ss_pred ceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCc
Q 043890 397 DKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGN 476 (509)
Q Consensus 397 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
.|..+..++.|..++.++.+|.+.++=.+.--.-. .++.....|.+-.++-+.. +.... .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s-~~eDgk~~v~CRt~~i~~~----------------~ftss--~- 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNS-EFEDGKSTVNCRTTPVAER----------------FFTSS--T- 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccc-eecCCCceEEEEeecccce----------------eeccC--C-
Confidence 35578889999999999999877665422111111 3343333344433322211 11000 0
Q ss_pred ccccccceEEEEEcCCC----cEEEEEecCceEEEe
Q 043890 477 SFDFTTKLLHLAWHPTE----NSIACAAANSLYMYY 508 (509)
Q Consensus 477 ~~~~~~~i~~~~~~p~~----~~la~~~~~~i~v~~ 508 (509)
.-.+.+++|||+. .+++..+++.++||+
T Consensus 165 ----~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 165 ----SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ----ceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 1347899999986 456666679999997
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.59 E-value=5 Score=37.15 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=59.2
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC----CCcEEEEEEcC-------
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSK------- 301 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~~l~~~~~d------- 301 (509)
.+.|+|.|+|++|++-..|.|++++ ..+.....+..+. ............++++|+ + .+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~-~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNG-YLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC--EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccc-cccccccCCcccceeccccCCCC-EEEEEEEcccCCCCCc
Confidence 5689999999887766899999999 3333212221111 223445667899999994 3 444444321
Q ss_pred -CeEEEEECCCCccc-CCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 302 -GSIRLIDLRQSALC-DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 302 -g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
..|.-|.+...... ......+..... .....| .-..|.|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~----~~~~~H--~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPD----TSSGNH--NGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-----CSSSS---EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCC----CCCCCC--CCccccCCCCCcEEEEeC
Confidence 23444544433110 000111111100 001122 356699999998777643
No 423
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.36 E-value=14 Score=35.57 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.0
Q ss_pred cCeEEEEECCCCCEEEEEc-CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC
Q 043890 231 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 290 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 290 (509)
...+.|+|.|+|++|++-. .|.|++++..+.... .+..+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence 4577899999998888884 799999986543321 1111111111113577889999987
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.25 E-value=2.1 Score=40.47 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=32.5
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCC
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKD 74 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~ 74 (509)
.....+.+++.+|++++.|+.+.-|.|.|+|+.++..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3556789999999999999988889999999998876
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.20 E-value=9.7 Score=37.19 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=45.6
Q ss_pred EEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCc
Q 043890 235 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 235 ~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 313 (509)
.+.|+|....|++- ....-.+++++......+. .+ ...+.|.|.+|.+||.++++..+..=.-++||-....
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka------Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA------DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE------ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 56799999888876 4333345666654433221 22 3467899999999994444444445567789865443
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.94 E-value=0.031 Score=55.71 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=45.8
Q ss_pred EECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEE
Q 043890 47 EFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 126 (509)
Q Consensus 47 ~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 126 (509)
-|-++.-++..+..++.+++.+.++... ..+.+|...-..+.-+ ...+.-++=
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~------------------------~l~rsHs~~~~d~a~~--~~g~~~l~~- 242 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR------------------------SLFRSHSQRVTDMAFF--AEGVLKLAS- 242 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH------------------------HHHHhcCCCcccHHHH--hhchhhhee-
Confidence 3334667888888899999988776543 2334444110000000 011111111
Q ss_pred EcCCCceEEEeeCCCeEEEEecc
Q 043890 127 QTANGALFLLSTNDKTIKFWKVQ 149 (509)
Q Consensus 127 ~~~~~~~l~s~~~dg~i~vwd~~ 149 (509)
.+|||..|+.++.||.++.|.+.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeee
Confidence 28999999999999999999875
No 427
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.67 E-value=19 Score=35.84 Aligned_cols=170 Identities=13% Similarity=0.084 Sum_probs=84.3
Q ss_pred EEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc--cceEE-EEEeCCCCcEEEEEE------cCCeEEEEECCCCc
Q 043890 244 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT--EVITS-AEFHPTHCNMLAYSS------SKGSIRLIDLRQSA 313 (509)
Q Consensus 244 ~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~-l~~~~~~~~~l~~~~------~dg~i~vwd~~~~~ 313 (509)
.++.+ .|+.+.-+|.++++.+.+. ....+. ..+++ .... ++ . ++++. .+|.|.-+|.++++
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~------~~~~~~~~~~~tssP~v~-~g-~-Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSK------KNGDYKAGYTITAAPLVV-KG-K-VITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeec------ccccccccccccCCcEEE-CC-E-EEEeecccccCCCcEEEEEECCCCc
Confidence 45555 7888888898888766542 111111 11111 1111 33 3 44443 26899999999998
Q ss_pred ccCCceeeecccc------------CCCCc----cccccccccEE-EEEEecCCCEEEEec------CC-----------
Q 043890 314 LCDSHAILFEEQE------------APGSR----SFFTEIIASIS-DIKFAKDGRHILSRD------YM----------- 359 (509)
Q Consensus 314 ~~~~~~~~~~~~~------------~~~~~----~~~~~~~~~i~-~~~~s~~~~~l~s~~------~~----------- 359 (509)
..++.-. ..... .+... .....-...+. .+++.|+..+++.+. ++
T Consensus 193 ~lW~~~~-~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~ 271 (527)
T TIGR03075 193 LVWRRYT-VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS 271 (527)
T ss_pred eeEeccC-cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence 6543111 11100 00000 00000011222 246666655555542 11
Q ss_pred eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC---EEEEeeCCCcEEEEeCCCCcee
Q 043890 360 TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL---RVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 360 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
+|.-.|+++ ++..-.++....... ++ +......-+.+..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 272 s~vAld~~T-G~~~W~~Q~~~~D~w---D~---d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDT-GKIKWHYQTTPHDEW---DY---DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEcccc-CCEEEeeeCCCCCCc---cc---cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 455667776 455544443221111 11 1111001233335676 7889999999999999999886
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.32 E-value=11 Score=35.98 Aligned_cols=102 Identities=7% Similarity=0.188 Sum_probs=55.7
Q ss_pred EEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC--------CEEEEecCCeEEEEE
Q 043890 294 MLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG--------RHILSRDYMTLKLWD 365 (509)
Q Consensus 294 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~s~~~~~i~iwd 365 (509)
++..|.....++--|+..++. +..+..+. .+ -+.|.|.. ..|+.-++..|.--|
T Consensus 482 i~~dg~~~~kLykmDIErGkv----veeW~~~d-------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrID 543 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKV----VEEWDLKD-------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRID 543 (776)
T ss_pred EEecCCCcccceeeeccccee----eeEeecCC-------------cc-eeecCCchhHHhcCccceEEeecccceEEec
Confidence 334455566777778888875 45565543 23 45666642 334444554444446
Q ss_pred CCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 366 INMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
.+-.+..+........ .+ .+. |+......+.|+|.++..|-|++||.-
T Consensus 544 PR~~gNKi~v~esKdY-~t-------Kn~----Fss~~tTesGyIa~as~kGDirLyDRi 591 (776)
T COG5167 544 PRARGNKIKVVESKDY-KT-------KNK----FSSGMTTESGYIAAASRKGDIRLYDRI 591 (776)
T ss_pred ccccCCceeeeeehhc-cc-------ccc----ccccccccCceEEEecCCCceeeehhh
Confidence 6543333332222111 11 000 123333456799999999999999954
No 429
>PHA03098 kelch-like protein; Provisional
Probab=90.17 E-value=16 Score=36.72 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=17.0
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCce
Q 043890 406 DGLRVATGSYS-----NLFRVFGCAPGST 429 (509)
Q Consensus 406 ~~~~l~~~~~d-----g~i~iw~~~~~~~ 429 (509)
+++.++.|+.+ +.+.+||..+.+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 67777777754 4688888886654
No 430
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.11 E-value=28 Score=36.73 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=79.7
Q ss_pred ccccCeEEEEEC---C----CCCEEEEEcCCeEEEEEccCCCc------ee------eEeeccCCccCCCccceEEEEEe
Q 043890 228 AHDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SF------NIVDVKPANMEDLTEVITSAEFH 288 (509)
Q Consensus 228 ~~~~~v~~i~~~---~----~~~~l~~~~dg~i~iwd~~~~~~------~~------~~~~~~~~~~~~~~~~i~~l~~~ 288 (509)
.-..+|..|+|. . ..++|++-....+.|+...-.+. .. .+..+... .....+...++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~--~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS--DTGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechh--hcCCCccceEEec
Confidence 345678888887 2 22466665667788887322111 00 00111111 1124567789999
Q ss_pred CCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCC
Q 043890 289 PTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINM 368 (509)
Q Consensus 289 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 368 (509)
|.....||+....|...|||+............+.... .+....-......-..+.|.++-..|+.++...+.++|+.+
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~-~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNI-SGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCC-CccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 98778999999999999999932221110011111110 01110000111455688999998889988889999999986
Q ss_pred C
Q 043890 369 D 369 (509)
Q Consensus 369 ~ 369 (509)
.
T Consensus 234 ~ 234 (765)
T PF10214_consen 234 N 234 (765)
T ss_pred C
Confidence 3
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=90.04 E-value=16 Score=33.91 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=84.9
Q ss_pred ccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 230 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
...+.++.+.+++.+++++..|.+..- .+.+...... ....-...++++.+.+++ +.++++ ..|.+++=.-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~------~~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTP------HQRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEE------eeCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence 345788999999888888877766532 1222221111 112234678899999987 665554 5676653223
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDL 389 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 389 (509)
+.+.. +.....+.. .-...+.++.+.+++..++++.+|.+.. .... ++.-...........
T Consensus 243 d~G~s-------W~~~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~-G~tW~~~~~~~~~~~----- 303 (334)
T PRK13684 243 DDLES-------WSKPIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDG-GKTWEKDPVGEEVPS----- 303 (334)
T ss_pred CCCCc-------cccccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCCC-CCCCeECCcCCCCCc-----
Confidence 33321 111100000 0013578889999988888887775553 3332 333232221111100
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 390 YENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 390 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
..+.+.|..+++.++ .+..|.|.-|+-
T Consensus 304 -------~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 304 -------NFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred -------ceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 012666766666555 666788877653
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=5.9 Score=37.87 Aligned_cols=92 Identities=8% Similarity=0.102 Sum_probs=53.0
Q ss_pred ccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccc-----cccccccCCCccceeeEEEcCCC---CEE
Q 043890 339 ASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRP-----KLCDLYENDSIFDKFECCLSGDG---LRV 410 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~---~~l 410 (509)
-.|..+..++.|..++-++-..|.|..+.....+-..+......+. .-..+|....-..+..++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3577888899999888755433444444221111111111111000 01123433444445688999986 567
Q ss_pred EEeeCCCcEEEEeCCCCcee
Q 043890 411 ATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 411 ~~~~~dg~i~iw~~~~~~~~ 430 (509)
..-+.|+.|++|++..-+.+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 77889999999999865554
No 433
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.82 E-value=13 Score=32.62 Aligned_cols=104 Identities=6% Similarity=-0.003 Sum_probs=56.4
Q ss_pred cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 249 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
.++...+||..+.+...+. .+. ..=..++ .++ ..|+.+.....+.++|..+-+. .+.+......
T Consensus 108 k~~~~f~yd~~tl~~~~~~------~y~---~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~----~~~i~V~~~g 171 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTF------PYP---GEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKE----VRTIQVTDNG 171 (264)
T ss_dssp SSSEEEEEETTTTEEEEEE------E-S---SS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SE----EEEEE-EETT
T ss_pred cCCeEEEEccccceEEEEE------ecC---CcceEEE--cCC-CEEEEECCccceEEECCcccce----EEEEEEEECC
Confidence 7899999999876654332 222 2223455 455 5677777788899999887654 2333222111
Q ss_pred CCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
.+ ...++.+.|- +|...|-.- ...|..-|..+ ++....+.
T Consensus 172 ~p-------v~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~~iD 212 (264)
T PF05096_consen 172 RP-------VSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVGWID 212 (264)
T ss_dssp EE----------EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE
T ss_pred EE-------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEEEEE
Confidence 00 1356667775 565544443 37777788886 56655554
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.80 E-value=15 Score=33.28 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=99.9
Q ss_pred cccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccC-CCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 229 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
-...+.+|.|..+..-+++|..+.| +....+......... ... .......++.|..+ ..+++| ..+ +.+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~ivG-~~g-~ll~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIVG-EPG-LLLH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEEE-ETT-EEEE
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEEc-CCc-eEEE
Confidence 3457889999876777888866654 444444332221100 111 11234677888654 445544 445 3333
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
-.+.++ .++.+.. . ...+ .....+....++..++++..|. ||-....++.-+.+.....
T Consensus 86 T~DgG~-tW~~v~l-~-~~lp----------gs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~------ 144 (302)
T PF14870_consen 86 TTDGGK-TWERVPL-S-SKLP----------GSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS------ 144 (302)
T ss_dssp ESSTTS-S-EE------TT-S----------S-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S--------
T ss_pred ecCCCC-CcEEeec-C-CCCC----------CCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc------
Confidence 334343 2211110 0 0000 2233344434444444443343 4444433333333221111
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcc--cceeeEeecC
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSL--SSITRVVRRG 465 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~--~~~~~~~~~~ 465 (509)
..+..+.-++||++++++..-....-|+-....-.. .-......+..+.|+|++.--.+ ++..+.-+..
T Consensus 145 --------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 145 --------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP 215 (302)
T ss_dssp ----------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T
T ss_pred --------ceeEeEEECCCCcEEEEECcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEeCCcEEEEccCC
Confidence 112377788999999877666666677755322222 22334578889999988443110 0111111101
Q ss_pred CCCCcccCCCccccc-ccceEEEEEcCCCcEEEEEecCceEE
Q 043890 466 SDVPGVDTNGNSFDF-TTKLLHLAWHPTENSIACAAANSLYM 506 (509)
Q Consensus 466 ~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~la~~~~~~i~v 506 (509)
.....|...-..+.- .-.+..++|.+++...|+|+.+.+++
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 111111100000000 23478999999999999888887654
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=15 Score=34.66 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=66.2
Q ss_pred cccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 229 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
..++|.+|.|++|++.+|+- .+..|.+++....+..... ....+..+..|....|..+ .-+|.-...| +.+|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~----~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY----TQECKTKNANILGFCWTSS--TEIAFITDQG-IEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH----HHHhccCcceeEEEEEecC--eeEEEEecCC-eEEE
Confidence 44689999999999999999 8999999998543322110 0123334566889999877 3455555444 5666
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.....+.. ++..+.+ ...|+-..|.++-+.++-
T Consensus 138 ~v~pekrs---lRlVks~------------~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 138 QVLPEKRS---LRLVKSH------------NLNVNWYMYCPETAVILL 170 (657)
T ss_pred EEchhhhh---hhhhhhc------------ccCccEEEEccccceEee
Confidence 54433211 2323322 357888888887775443
No 436
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.69 E-value=24 Score=35.51 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCCEEEEE-cCC-----eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC------eEEEEE
Q 043890 241 DGETFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG------SIRLID 308 (509)
Q Consensus 241 ~~~~l~~~-~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg------~i~vwd 308 (509)
+|.+.++| .|| .+..||.++.+.... ..+........... -++ .+.++|+.++ .+..||
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v------a~m~~~r~~~gv~~--~~g-~iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV------APMLTRRSGHGVAV--LGG-KLYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCccccc------CCCCcceeeeEEEE--ECC-EEEEEcCcCCCccccceEEEEc
Confidence 46666666 553 477788876553211 11111112222222 234 7888888654 578899
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C-----CeEEEEECCCCCCceEEEeecccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEYL 382 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~ 382 (509)
..+++.. .+..+.... .-..++. -++.+.+.|+ + .+|..||..+ .+.... ......
T Consensus 451 P~t~~W~--~~~~M~~~R-------------~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~-~~W~~v-~~m~~~ 512 (571)
T KOG4441|consen 451 PETNTWT--LIAPMNTRR-------------SGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPET-NQWTMV-APMTSP 512 (571)
T ss_pred CCCCcee--ecCCccccc-------------ccceEEE-ECCEEEEECCccCCCccceEEEEcCCC-CceeEc-ccCccc
Confidence 8887631 111111111 1111222 2566666664 2 3477888886 332222 111111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeeCCC-----cEEEEeCCCCce
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-----LFRVFGCAPGST 429 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 429 (509)
+... .+ ..-+++..+.|+.|| +|..||..+.+.
T Consensus 513 rs~~-------------g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 513 RSAV-------------GV-VVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred cccc-------------cE-EEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 1100 11 223667777788775 566777665543
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.65 E-value=17 Score=33.62 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=62.6
Q ss_pred eEEEEECCCCCEEEEE-cC------CeEEEEEccCCCceeeEeeccCC--------ccCCCccceEEEEEeCCCCcEEEE
Q 043890 233 INSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPA--------NMEDLTEVITSAEFHPTHCNMLAY 297 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~d------g~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~~~~~l~~ 297 (509)
.-+|++.+++.++++. .+ ..|+.++.+ +.....+ .+... .-...+..+-+|+++|++ +.|++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~-~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRF-PVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFA 163 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceE-ccccccccccCccccccCCCCeEEEEECCCC-CEEEE
Confidence 4467777788888887 67 788888866 4432222 11110 112346678999999998 65555
Q ss_pred EEcC-----C--e-------EEE--EECCC-CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 298 SSSK-----G--S-------IRL--IDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 298 ~~~d-----g--~-------i~v--wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
+.+. + . +++ ||..+ +....+..+.++... ... ....+..+.+-+++++|+.
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~--~~~-----~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPP--TAP-----GDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccc--ccc-----CCCCceeEEEECCCcEEEE
Confidence 5432 2 1 444 44444 211111122222100 000 2257889999999998875
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.42 E-value=13 Score=31.79 Aligned_cols=97 Identities=6% Similarity=0.054 Sum_probs=64.2
Q ss_pred EEEEEEecCCCEEEEec--CCeEEEEEC--CCC----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 341 ISDIKFAKDGRHILSRD--YMTLKLWDI--NMD----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 341 i~~~~~s~~~~~l~s~~--~~~i~iwd~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
-+.++|+.+.+.+..-+ +-.|.-||. .++ .+.+..++.....-..+ .+ .++...+|.+.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-----PD------Gm~ID~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-----PD------GMTIDTEGNLYVA 228 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-----CC------cceEccCCcEEEE
Confidence 36688998888777754 356766874 331 12222222211100000 01 4666778888888
Q ss_pred eeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCC
Q 043890 413 GSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPS 449 (509)
Q Consensus 413 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~ 449 (509)
.-..++|...|..+|+.+. .++-....+++.+|-..
T Consensus 229 ~~ng~~V~~~dp~tGK~L~-eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILL-EIKLPTPQITSCCFGGK 264 (310)
T ss_pred EecCcEEEEECCCCCcEEE-EEEcCCCceEEEEecCC
Confidence 8888999999999999998 88888999999999654
No 439
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.02 E-value=19 Score=33.32 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=63.3
Q ss_pred cCeEEEEECC-CCCEEEEEcCCe------EEEEEccCCC-ceeeEeeccCCccCC--------CccceEEEEEeCCCCcE
Q 043890 231 YHINSISNNS-DGETFISADDLR------INLWNLEISN-QSFNIVDVKPANMED--------LTEVITSAEFHPTHCNM 294 (509)
Q Consensus 231 ~~v~~i~~~~-~~~~l~~~~dg~------i~iwd~~~~~-~~~~~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~ 294 (509)
+.+..|.+.+ ++.+++.+++|. ++.+++.... ....+...+...+.. .....-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 4577889985 455555557777 6666665411 111110001111111 11244578887776 77
Q ss_pred EEEEEcC------CeEEEEECCCCcccCCceeeeccccCCCCcc---ccccccccEEEEEEecCCCEEEE
Q 043890 295 LAYSSSK------GSIRLIDLRQSALCDSHAILFEEQEAPGSRS---FFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 295 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
+++.-.+ ..|..++.. ++. ...+..+....... .-...+...-+++++|+|+.|++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~----~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRV----IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Ccc----cceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 7777667 789999877 543 22221111000000 11123467999999999995554
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.97 E-value=4.3 Score=33.37 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=23.7
Q ss_pred eeeEEEcCCC------CEEEEeeCCCcEEEEeCCC
Q 043890 398 KFECCLSGDG------LRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 398 v~~~~~s~~~------~~l~~~~~dg~i~iw~~~~ 426 (509)
+..++|||.| -+||+.+.++.|.||....
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4589999955 3688889999999998763
No 441
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.61 E-value=26 Score=35.29 Aligned_cols=150 Identities=9% Similarity=0.093 Sum_probs=75.6
Q ss_pred CCCEEEEE-cC------CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC-----eEEEEE
Q 043890 241 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLID 308 (509)
Q Consensus 241 ~~~~l~~~-~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg-----~i~vwd 308 (509)
++.++++| .| ..+..||.++.+... + ..+...........+ +| .+.++|+.|| ++..||
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~-----a~M~~~R~~~~v~~l--~g-~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-V-----APMNTKRSDFGVAVL--DG-KLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-c-----CCccCccccceeEEE--CC-EEEEEeccccccccccEEEec
Confidence 34566666 55 467788888765321 1 122222222222222 33 7889999886 477888
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C------CeEEEEECCCCCCceEEEeeccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y------MTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~------~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
..+.+.. .+..+.... .....+ .-+|++.+.|+ + .++..||..+ +.....-.....
T Consensus 403 p~~~~W~--~va~m~~~r------------~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t-~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 403 PVTNKWT--PVAPMLTRR------------SGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPET-NTWTLIAPMNTR 465 (571)
T ss_pred CCCCccc--ccCCCCcce------------eeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCC-CceeecCCcccc
Confidence 8877531 111111000 111112 22577777764 1 5688899886 222211111111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-----cEEEEeCCCCceee
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-----LFRVFGCAPGSTEA 431 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~ 431 (509)
... +.++. -++.+.+.|+.|+ +|..||..+.+...
T Consensus 466 R~~--------------~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 466 RSG--------------FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ccc--------------ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 000 02222 3677778888776 37778877665543
No 442
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.48 E-value=36 Score=35.88 Aligned_cols=110 Identities=10% Similarity=0.150 Sum_probs=60.2
Q ss_pred ccEEEEEEecC-CCEEEEecC-CeEEEEECCC-CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 339 ASISDIKFAKD-GRHILSRDY-MTLKLWDINM-DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 339 ~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
.+...++|+|. .+.||.-+. |...|||+.. .......+.........+ +++.+..-....+.|.++...|+.++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi--~~d~~e~s~w~rI~W~~~~~~lLv~~- 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI--IFDPEELSNWKRILWVSDSNRLLVCN- 222 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc--cCCCcccCcceeeEecCCCCEEEEEc-
Confidence 46788999994 446666664 9999999921 111111111111111111 11112222233789988888887666
Q ss_pred CCcEEEEeCCCCceee-eeeccCCCceeEEEEcCCCC
Q 043890 416 SNLFRVFGCAPGSTEA-TTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 416 dg~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~ 451 (509)
...+.++|+++..... .........+..+.-++...
T Consensus 223 r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~ 259 (765)
T PF10214_consen 223 RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNP 259 (765)
T ss_pred CCceEEEECCCCCccchhccCCChhheeeEEecCCcc
Confidence 4478899999775533 12233345555665555533
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=31 Score=34.97 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.8
Q ss_pred ccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEe
Q 043890 339 ASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~ 377 (509)
+.+..+..||+.++|+--.+ |.|.+-+... .+.+..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 46888999999999998654 9998888875 45444444
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.21 E-value=4.1 Score=23.70 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCCCEEEEee-CCCcEEEEeCCCCceeeeeecc
Q 043890 405 GDGLRVATGS-YSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 405 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
|++++|+++. .++.|.++|..+++.+. .+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~-~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA-TIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE-EEEC
Confidence 5677666655 57899999999888777 5554
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=85.87 E-value=34 Score=33.72 Aligned_cols=64 Identities=5% Similarity=0.032 Sum_probs=33.0
Q ss_pred CCCEEEEE-cC--CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC---eEEEEECCCCc
Q 043890 241 DGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDLRQSA 313 (509)
Q Consensus 241 ~~~~l~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg---~i~vwd~~~~~ 313 (509)
++.+.+.| .+ ..+..||..+.... .+ ..+.........++ -++ ++.+.|+.++ .+..||.++.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~-~~-----~~l~~~r~~~~~~~--~~g-~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWV-NM-----PSLLKPRCNPAVAS--INN-VIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEE-EC-----CCCCCCCcccEEEE--ECC-EEEEecCcCCCCccEEEEeCCCCE
Confidence 56666666 32 45778887654321 11 11211111112222 244 7788887653 46788887765
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.76 E-value=0.1 Score=48.56 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=84.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CC
Q 043890 282 ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YM 359 (509)
Q Consensus 282 i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~ 359 (509)
.....|.+.+ .-++.++.+..+..||-..... ++... .+....++|..++..++.. . .+
T Consensus 37 pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~-------le~n~-----------tg~aldm~wDkegdvlavlAek~~ 97 (615)
T KOG2247|consen 37 PIIHRWRPEG-HNLAVACANTIVIYYDKAGQVI-------LELNP-----------TGKALDMAWDKEGDVLAVLAEKTG 97 (615)
T ss_pred cceeeEecCC-CceehhhhhhHHHhhhhhccee-------cccCC-----------chhHhhhhhccccchhhhhhhcCC
Confidence 3456788887 5588888888999998554321 11110 1456678888888766653 3 49
Q ss_pred eEEEEECCCCCCceEEEee-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 360 TLKLWDINMDSGPVATFQV-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 360 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
.+.+||+.+. ..+.+.. ...... -+.|++....++.+...|.+.|++..+.+... ++.-|.
T Consensus 98 piylwd~n~e--ytqqLE~gg~~s~s---------------ll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~ 159 (615)
T KOG2247|consen 98 PIYLWDVNSE--YTQQLESGGTSSKS---------------LLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQ 159 (615)
T ss_pred Ceeechhhhh--hHHHHhccCcchHH---------------HHhhccCCccccccccccceEEEeccchhhhh-hhcccc
Confidence 9999999862 2222221 111100 35789989999999999999999988776664 444466
Q ss_pred CceeEEEEcC
Q 043890 439 NPMRRQVQTP 448 (509)
Q Consensus 439 ~~v~~~~~s~ 448 (509)
..+..+++.+
T Consensus 160 RRgtq~av~l 169 (615)
T KOG2247|consen 160 RRGTQIAVTL 169 (615)
T ss_pred cceeEEEecc
Confidence 5555555554
No 447
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.54 E-value=27 Score=35.23 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=29.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhh
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKI 156 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 156 (509)
..++++.- .|.++.++++..||+|++|+....+..++
T Consensus 15 e~~~aiqs--hp~~~s~v~~~~d~si~lfn~~~r~qski 51 (1636)
T KOG3616|consen 15 EFTTAIQS--HPGGQSFVLAHQDGSIILFNFIPRRQSKI 51 (1636)
T ss_pred ceeeeeee--cCCCceEEEEecCCcEEEEeecccchhhh
Confidence 44677776 78999999999999999999876655333
No 448
>PHA03098 kelch-like protein; Provisional
Probab=84.31 E-value=48 Score=33.25 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=15.9
Q ss_pred CCCcEEEEEEcC-----CeEEEEECCCCc
Q 043890 290 THCNMLAYSSSK-----GSIRLIDLRQSA 313 (509)
Q Consensus 290 ~~~~~l~~~~~d-----g~i~vwd~~~~~ 313 (509)
++ ++++.|+.+ ..+..||..+.+
T Consensus 342 ~~-~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NN-RIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CC-EEEEEeCCCCCEecceEEEEcCCCCc
Confidence 44 788888865 347778887665
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.05 E-value=14 Score=30.43 Aligned_cols=32 Identities=13% Similarity=0.418 Sum_probs=25.0
Q ss_pred ccceeeEEEEcCCC------ceEEEeeCCCeEEEEeccch
Q 043890 118 EKINKIRWCQTANG------ALFLLSTNDKTIKFWKVQEK 151 (509)
Q Consensus 118 ~~v~~l~~~~~~~~------~~l~s~~~dg~i~vwd~~~~ 151 (509)
..|..++| ||.| -+|++...++.|.||.-...
T Consensus 86 ~~vv~~aW--SP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAW--SPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEE--CCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 37899999 6643 36888899999999997643
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.95 E-value=25 Score=29.73 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=37.9
Q ss_pred EEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----CC---eEEEE
Q 043890 294 MLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----YM---TLKLW 364 (509)
Q Consensus 294 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~---~i~iw 364 (509)
.|..+.....|.+|++.... ......|..- +.|..+.++..|.||++-. .. .+|+|
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~--~~~~~~F~Tv-------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE--CPLLCTFSTV-------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC--CceeEEEcch-------------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34344666789999999432 1234455433 5899999999999999952 13 56775
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.80 E-value=0.38 Score=45.03 Aligned_cols=144 Identities=11% Similarity=0.202 Sum_probs=94.4
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcccee
Q 043890 43 ISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 122 (509)
Q Consensus 43 I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 122 (509)
-....|-|.+.-|+.++.+..+..||-..... +....+ +....
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~--------------------------le~n~t-----------g~ald 79 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI--------------------------LELNPT-----------GKALD 79 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhccee--------------------------cccCCc-----------hhHhh
Confidence 34466778776688888888888888654332 111111 45677
Q ss_pred eEEEEcCCCceEE-EeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 123 IRWCQTANGALFL-LSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 123 l~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
|+| ..++..++ .+-..+.+.+||+++....+....
T Consensus 80 m~w--DkegdvlavlAek~~piylwd~n~eytqqLE~g------------------------------------------ 115 (615)
T KOG2247|consen 80 MAW--DKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG------------------------------------------ 115 (615)
T ss_pred hhh--ccccchhhhhhhcCCCeeechhhhhhHHHHhcc------------------------------------------
Confidence 888 66766554 456678999999987654333110
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCcc
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 280 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
..|.... +.|++....++.+ ..|.+.+++..+.+... ....|..
T Consensus 116 -------------------------g~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii--------v~Gkh~R 160 (615)
T KOG2247|consen 116 -------------------------GTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII--------VMGKHQR 160 (615)
T ss_pred -------------------------CcchHHH--HhhccCCccccccccccceEEEeccchhhhh--------hhccccc
Confidence 1111112 5678878888888 78999999988876543 3344888
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
.++++++.+.+ +.+.++.|..+
T Consensus 161 Rgtq~av~lEd--~vil~dcd~~L 182 (615)
T KOG2247|consen 161 RGTQIAVTLED--YVILCDCDNTL 182 (615)
T ss_pred ceeEEEecccc--eeeecCcHHHH
Confidence 99999999985 55555555433
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.29 E-value=43 Score=31.92 Aligned_cols=155 Identities=8% Similarity=0.069 Sum_probs=80.7
Q ss_pred eEEEEECCCCCEEEEEcCCeEE-EEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 233 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
...+...+++.+++.+..|.+. -||-- ...... .-......++++.+.+++ .+++++ ..|.+..= ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~------~~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~S-~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQP------HNRASARRIQNMGWRADG-GLWLLT-RGGGLYVS-KGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEE------ecCCCccceeeeeEcCCC-CEEEEe-CCceEEEe-cCC
Confidence 4455677888888888555543 33322 211010 112234568899999987 555544 56655433 222
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE 391 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
++. ++ ...|....... -...+.++.|.+++..+++|..|.+..-.-. ++.-..........
T Consensus 310 G~~-~~-~~~f~~~~~~~-------~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~--G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLT-EE-DFDFEEADIKS-------RGFGILDVGYRSKKEAWAAGGSGILLRSTDG--GKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCc-cc-ccceeecccCC-------CCcceEEEEEcCCCcEEEEECCCcEEEeCCC--CcceeEccccCCCC--------
Confidence 220 00 00111111000 0135889999999999999987866665322 33333322111110
Q ss_pred CCCccceeeEEEcCCCCEEEEeeCCCcEEEE
Q 043890 392 NDSIFDKFECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
.. .+.+.|.++++.++ .+.+|.|.-|
T Consensus 371 -~~---ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 371 -AN---LYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred -cc---eeEEEEcCCCceEE-EeCCcEEEEe
Confidence 11 22788877766655 5667776554
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.62 E-value=12 Score=35.21 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=40.0
Q ss_pred cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCC
Q 043890 293 NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINM 368 (509)
Q Consensus 293 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 368 (509)
+-+++-+.+|++.++.-...+.. .++.- -..+.-+++||++.++++-+.|.|+++.+.+
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~l-----L~~~~------------~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLL-----LFERA------------YQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ceEEEEcCCCceeeeecccCcce-----ehhhh------------hcCcceeeeCcccchheeecCCceEEEEecC
Confidence 55667777777777654443321 11110 0256678999999999997779999999986
No 454
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.29 E-value=66 Score=32.67 Aligned_cols=34 Identities=15% Similarity=0.515 Sum_probs=29.4
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK 152 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 152 (509)
++.|-+|.| .++++.+++...+|.|.+||.+.+.
T Consensus 129 ~~kvv~Ik~--~~~~~~I~vvl~nG~i~~~d~~~~~ 162 (670)
T PF10395_consen 129 DDKVVGIKF--SSDGKIIYVVLENGSIQIYDFSENS 162 (670)
T ss_pred ccceEEEEE--ecCCCEEEEEEcCCcEEEEeccccc
Confidence 477999999 7899999999999999999995443
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.22 E-value=23 Score=27.36 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=46.9
Q ss_pred EEEeCCCCcEEEEEEcCCeEEEEECCCCccc----CCceeeeccccCCCCccccccccccEEEEEEec-----CCCEEEE
Q 043890 285 AEFHPTHCNMLAYSSSKGSIRLIDLRQSALC----DSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-----DGRHILS 355 (509)
Q Consensus 285 l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~s 355 (509)
-.|.... ..|+.++.-|+|.|++....... ...+..+... ..|++++-.+ +...|+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-------------~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-------------QEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECC-------------CceEEEEEEecCCCCCcCEEEE
Confidence 3455665 57888888999999988755321 1122333322 4677766443 3558888
Q ss_pred ecCCeEEEEECCCC
Q 043890 356 RDYMTLKLWDINMD 369 (509)
Q Consensus 356 ~~~~~i~iwd~~~~ 369 (509)
|+...+..||+..+
T Consensus 70 Gt~t~llaYDV~~N 83 (136)
T PF14781_consen 70 GTQTSLLAYDVENN 83 (136)
T ss_pred eccceEEEEEcccC
Confidence 98899999999863
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.12 E-value=9.7 Score=35.78 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=85.2
Q ss_pred ccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCcee-eEeeccCCccCCCccceE-EEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 230 DYHINSISNNSDGETFISADDLRINLWNLEISNQSF-NIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
-..+..+-..|+|+.+..-....+.++++.+..... ++.+..+. .....|+ ++..-..+ .-+.+++.||.|.-|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg---~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vsQW 295 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG---DSRHQVTEQLYLLSGG-FSLLVVHEDGLVSQW 295 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC---chHHHHHHHHHHHhCc-eeEEEEcCCCceeee
Confidence 355777888999999988744788888887533211 11100000 0001122 12222233 677888888888766
Q ss_pred -ECCCCcc-cCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccc
Q 043890 308 -DLRQSAL-CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRP 384 (509)
Q Consensus 308 -d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 384 (509)
|.+.+.. ....++.+.... .++..+.-..+.+-+++-+ .|++.++.... .+++..-..-+..
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~~-- 360 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQAP-- 360 (733)
T ss_pred eeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcCc--
Confidence 5554431 111112221110 2233332222333444433 37777666553 2222111111111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
.-+++||.+.+|++ -+.|.|+++.+++..+.
T Consensus 361 --------------~~~~~Sp~~~~Ll~-e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 361 --------------QLVAMSPNQAYLLS-EDQGKIRLAQLENRNPE 391 (733)
T ss_pred --------------ceeeeCcccchhee-ecCCceEEEEecCCCCC
Confidence 16889999999874 45678999998866544
No 457
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.54 E-value=71 Score=32.59 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=35.9
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec--cCCCceeEEEEcCC
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE--ASKNPMRRQVQTPS 449 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~s~~ 449 (509)
.+..||+.++|+.=..+|.|.+-+++..+++. .+. .|. +-..++|...
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lc-e~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQILC-EFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhhhhh-ccCCCCCC-chHhceeecC
Confidence 78999999999999999999999998777666 554 333 2235666543
No 458
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.25 E-value=41 Score=29.66 Aligned_cols=209 Identities=14% Similarity=0.041 Sum_probs=0.0
Q ss_pred EcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccc
Q 043890 127 QTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLR 206 (509)
Q Consensus 127 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 206 (509)
|.+||..-+++...+.|--.|..+++....
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~~y-------------------------------------------------- 98 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVETY-------------------------------------------------- 98 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceEEE--------------------------------------------------
Q ss_pred cccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEE
Q 043890 207 LPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 286 (509)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 286 (509)
-.+....-..|...|+|..-++-....|.-.|-++.+...-.+ ..+.-........
T Consensus 99 -------------------pLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~l-----p~~~a~~nlet~v 154 (353)
T COG4257 99 -------------------PLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPL-----PLEHADANLETAV 154 (353)
T ss_pred -------------------ecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeec-----ccccCCCccccee
Q ss_pred EeCCCCcEEEEEEcC---------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 287 FHPTHCNMLAYSSSK---------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 287 ~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
|.+.| ++-+++... +.|++|+.-.+. .-..++..|||..-++.-
T Consensus 155 fD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~--------------------------gpyGi~atpdGsvwyasl 207 (353)
T COG4257 155 FDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQGG--------------------------GPYGICATPDGSVWYASL 207 (353)
T ss_pred eCCCc-cEEEeeccccceecCcccCceeeeccCCCC--------------------------CCcceEECCCCcEEEEec
Q ss_pred C-CeEEEEECCCCCCceEEEeec-ccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 358 Y-MTLKLWDINMDSGPVATFQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 358 ~-~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
. +.|-..|.............. ..... .+--+|.|+.-++....+.++-||..........|.
T Consensus 208 agnaiaridp~~~~aev~p~P~~~~~gsR---------------riwsdpig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 208 AGNAIARIDPFAGHAEVVPQPNALKAGSR---------------RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred cccceEEcccccCCcceecCCCccccccc---------------ccccCccCcEEEeccCCceeeEeCcccccceeeeCC
Q ss_pred cCCCceeEEEEcCCCC
Q 043890 436 ASKNPMRRQVQTPSRP 451 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~ 451 (509)
+....-.++.....++
T Consensus 273 gs~arpys~rVD~~gr 288 (353)
T COG4257 273 GSKARPYSMRVDRHGR 288 (353)
T ss_pred CCCCCcceeeeccCCc
No 459
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.76 E-value=26 Score=35.70 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=38.2
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
.+..++|+-....++.+..+.+.+|-......-... .-.-..+.-+.|+|...+.+...+....
T Consensus 297 k~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~--------e~~ip~~s~vkwhpe~~nTl~f~d~~~I 360 (1243)
T COG5290 297 KAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKV--------ERQIPGISYVKWHPEEKNTLLFRDGERI 360 (1243)
T ss_pred hhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEE--------eecCCCcceeeeccccCcEEEEecCCeE
Confidence 355566766666666666778999987754433221 1123455668899877555555544443
No 460
>PRK10115 protease 2; Provisional
Probab=78.24 E-value=91 Score=32.47 Aligned_cols=33 Identities=3% Similarity=0.007 Sum_probs=24.7
Q ss_pred cceEEEEECCCCCeEEeecC-----CCeEEEEEccCCC
Q 043890 41 DIISAIEFDKTGDHLATGDR-----GGRVVLFERTDTK 73 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~-----dg~i~lw~~~~~~ 73 (509)
-.+..+.++|||++||.+.. ...|++-|+.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 45778899999999987533 2468888887665
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.22 E-value=46 Score=29.08 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=64.5
Q ss_pred EEEEeCCCCcEEEEEEc-C--CeEEEEECCC-CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-
Q 043890 284 SAEFHPTHCNMLAYSSS-K--GSIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY- 358 (509)
Q Consensus 284 ~l~~~~~~~~~l~~~~~-d--g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 358 (509)
+=.+-++| ++|.+|+. + ..+++++... ...+ .-.+...... ....-.++..-|||+.|+.|+.
T Consensus 71 gg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~----~w~e~~~~m~-------~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 71 GGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTC----DWTESPNDMQ-------SGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCC----CceECccccc-------CCCccccceECCCCCEEEEeCcC
Confidence 34567888 88888876 2 3477777654 1110 0000000000 0012333445579999998753
Q ss_pred -CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 359 -MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 359 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
....+|.-.........+........ ......++ .+...|+|++++.+..+.. |||..+.+.+. .+.
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlYP--~~~llPdG~lFi~an~~s~--i~d~~~n~v~~-~lP 206 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLYP--FVHLLPDGNLFIFANRGSI--IYDYKTNTVVR-TLP 206 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhc-----cCccccCc--eEEEcCCCCEEEEEcCCcE--EEeCCCCeEEe-eCC
Confidence 45666655321111111111100000 00011121 5677899999988887644 56887776655 444
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.36 E-value=12 Score=21.70 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=21.2
Q ss_pred cCCCEEEEec--CCeEEEEECCCCCCceEEEee
Q 043890 348 KDGRHILSRD--YMTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 348 ~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~ 378 (509)
|+++.|+++. +++|.++|..+ ...+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 5777777653 49999999986 566655554
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.21 E-value=25 Score=33.81 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=61.2
Q ss_pred EEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecc
Q 043890 246 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEE 324 (509)
Q Consensus 246 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 324 (509)
++| ++..|.-.|.+.....+.....+ ... ......+..-..+| ++|.++..|-|++||--..+. ++
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esK--dY~-tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-----Kt--- 597 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESK--DYK-TKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-----KT--- 597 (776)
T ss_pred EEeecccceEEecccccCCceeeeeeh--hcc-ccccccccccccCc--eEEEecCCCceeeehhhcchh-----hh---
Confidence 345 77777777776544222111111 111 12233344444444 899999999999999544321 11
Q ss_pred ccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCC
Q 043890 325 QEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINM 368 (509)
Q Consensus 325 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 368 (509)
.+++....|..+..+.+|+++++.....+.+-|++-
T Consensus 598 --------alP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 598 --------ALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred --------cCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 122233678999999999988876567788888763
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.75 E-value=44 Score=28.12 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=31.7
Q ss_pred cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcc
Q 043890 249 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
.+|.-..+|.++-+..-+ ..+.+ .=..+ ..++ .-|+.++...+++.-|..+-..
T Consensus 109 ~egvaf~~d~~t~~~lg~------~~y~G---eGWgL--t~d~-~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 109 KEGVAFKYDADTLEELGR------FSYEG---EGWGL--TSDD-KNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred ccceeEEEChHHhhhhcc------cccCC---cceee--ecCC-cceEeeCCceEEEecCHHHhhh
Confidence 778889999887664322 12222 22233 3344 4466666666788878776543
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.53 E-value=10 Score=21.69 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=18.7
Q ss_pred CccceEEEEEeCCCCcEEEEEEcC--CeEEEE
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 307 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~d--g~i~vw 307 (509)
....-....|+|||..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345667899999994444555555 665555
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.12 E-value=70 Score=30.10 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=76.7
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe--C-CCCcEEEEEEcCCeEEEEECC---CCcccCCceeeecc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--P-THCNMLAYSSSKGSIRLIDLR---QSALCDSHAILFEE 324 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~-~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~ 324 (509)
..|++|.+......+.-+.-....+......+..+++. + ++..+++....+|.+..|-+. .+.+..+.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46899988743222221100000111112346677764 3 343467778889988888775 23333344666665
Q ss_pred ccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEe-e--cccccccccccccCCCccceee
Q 043890 325 QEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQ-V--HEYLRPKLCDLYENDSIFDKFE 400 (509)
Q Consensus 325 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~v~~ 400 (509)
. +.+..|........|+.+.. --|.-|+..-.......+- . ...... .|-.
T Consensus 207 ~-------------sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~a------------DvEG 261 (381)
T PF02333_consen 207 G-------------SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVA------------DVEG 261 (381)
T ss_dssp S-------------S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-------------EEE
T ss_pred C-------------CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccccc------------Cccc
Confidence 4 46888899888888888864 5566677763222211111 1 111110 0113
Q ss_pred EEE--cCCC-CEEEEee-CCCcEEEEeCCC
Q 043890 401 CCL--SGDG-LRVATGS-YSNLFRVFGCAP 426 (509)
Q Consensus 401 ~~~--s~~~-~~l~~~~-~dg~i~iw~~~~ 426 (509)
+++ ..++ .||+..+ .+++..||+...
T Consensus 262 laly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 262 LALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred eEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 443 3444 3555554 477999999874
No 467
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.46 E-value=1.1e+02 Score=32.13 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=21.3
Q ss_pred EEEEeeCCCcEEEEeCCCCceee
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.++.++.+|.+++.|.++|+.+.
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEe
Confidence 78899999999999999998876
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=75.40 E-value=79 Score=30.34 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=36.2
Q ss_pred CEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 243 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 243 ~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
+-+++. -||.+.+|+-+.-. +.. .+.. ---..-+.|.+.- ..|++++.+..+.-|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~--f~~------~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFA--FSR------FLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEE--EEE------EcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 344444 69999999876432 211 1111 1112346777776 789999988889888764
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.17 E-value=84 Score=30.52 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=36.1
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.....|+|.|++ ++|++--..|.|++++..++.. ..+..+... ....-......|+++|+-
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~--~~~~~l~~v-------~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEV--KVVFTLPEI-------VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCce--eeeecCCce-------eccCCCCceeeEEECCCc
Confidence 345789999998 7666554469999998655431 001111100 000013678999999874
No 470
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.27 E-value=60 Score=35.29 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.8
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 404 SGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 404 s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
++++..++++..||.+..||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998765
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.50 E-value=19 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=26.2
Q ss_pred eEEEcC----CCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 400 ECCLSG----DGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 400 ~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
..+++. +..+|++.+.|+++++||+.+++++.
T Consensus 219 ~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 219 SLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred eEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 455555 67899999999999999999999966
No 472
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.49 E-value=26 Score=24.96 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=27.6
Q ss_pred EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 299 SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 299 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
..+|.+..||+.+++. ..+...- .-.+.+++++|+.+++.+.
T Consensus 34 ~~~GRll~ydp~t~~~-----~vl~~~L------------~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKET-----TVLLDGL------------YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEE-----EEEEEEE------------SSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeE-----EEehhCC------------CccCeEEEcCCCCEEEEEe
Confidence 3458899999998873 3332211 3578899999999888874
No 473
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.45 E-value=21 Score=35.88 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=25.0
Q ss_pred cceEEEEEeC----CCCcEEEEEEcCCeEEEEECCCCcc
Q 043890 280 EVITSAEFHP----THCNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 280 ~~i~~l~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
.....++++. +. .++++-+.|+.+|+||+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 3445566665 44 7999999999999999999875
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.66 E-value=1.3e+02 Score=33.03 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=85.5
Q ss_pred EEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe--------CCCCcEEEEEEcCCeEEEE
Q 043890 236 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--------PTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 236 i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--------~~~~~~l~~~~~dg~i~vw 307 (509)
+-+-|.=+.....-|+.+.+|+.+++... ..+.+.+..|..+..- |.= ++++.-..--.|.++
T Consensus 84 mGiFpeI~RaWiTiDn~L~lWny~~~~e~--------~~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 84 MGIFPEIGRAWITIDNNLFLWNYESDNEL--------AEYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVIL 154 (1311)
T ss_pred eccchhhcceEEEeCCeEEEEEcCCCCcc--------ccccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEEE
Confidence 33444433444445778999999985533 2344445555554432 222 233333333446655
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCc----eEEEeec----
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGP----VATFQVH---- 379 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~----~~~~~~~---- 379 (509)
-+.-...+.. ...|... -.+.-....|+++....+|+.+++|.||.|+=.-.+..... ...+...
T Consensus 155 gV~~~~~~~~-~~~f~~~------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 155 GVSFDEFTGE-LSIFNTS------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred EEEeccccCc-ccccccc------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHH
Confidence 4433321110 0111111 00000124688999889999999998774442222211110 0000000
Q ss_pred cccccccccc--ccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 380 EYLRPKLCDL--YENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 380 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
...+..+..+ .+.+++ ..+.....-+.|.+-++.|+|.+|++..
T Consensus 228 s~lvPs~~~~~~~~~dpI---~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPI---RQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcc---eeeEeccccceeeeeccCceEEEEEccC
Confidence 0000101111 112233 3788887788899999999999999985
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=70.36 E-value=83 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=23.3
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEcc
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERT 70 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~ 70 (509)
.-++|+|.+.+-++....+...+||..
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCC
Confidence 468999999888887788899999987
No 476
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.16 E-value=9.8 Score=20.61 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=19.2
Q ss_pred EEEEeeCCCcEEEEeCCCCceee
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.++.++.+|.++.+|..+|+.+-
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 57778889999999999888654
No 477
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.07 E-value=1.1e+02 Score=29.26 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=42.7
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
..+.++.+.+++..+++|.+|.+.... ..++. .+.. .....-...++.+.|.+++ + ....+.+|.|.-|
T Consensus 328 ~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~t-W~~~----~~~~~~~~~ly~v~f~~~~-~-g~~~G~~G~il~~ 396 (398)
T PLN00033 328 FGILDVGYRSKKEAWAAGGSGILLRST-DGGKS-WKRD----KGADNIAANLYSVKFFDDK-K-GFVLGNDGVLLRY 396 (398)
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcc-eeEc----cccCCCCcceeEEEEcCCC-c-eEEEeCCcEEEEe
Confidence 347889999999999999888776653 32332 1110 0112234567899988775 4 4445567776654
No 478
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=68.85 E-value=91 Score=28.22 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=80.2
Q ss_pred eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCC----cEEEEEE-cCCeEEEEECCCCcccCCceeeecccc
Q 043890 252 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC----NMLAYSS-SKGSIRLIDLRQSALCDSHAILFEEQE 326 (509)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~----~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~ 326 (509)
.|.+||+.+.+ +.+.+.+++.... ..+.+..+.+..... .++..+. ..+-|.|+|+.+++.. +.+....
T Consensus 35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHNSF 108 (287)
T ss_dssp EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETCGC
T ss_pred EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecCCc
Confidence 57778888765 4444444433333 467788888887431 2333333 3468999999998741 2222211
Q ss_pred CCCC-cccc------ccccccEEEEEEec---CCCEEEEecCCeEEEEECCC-----CCC--------ceEEEeeccccc
Q 043890 327 APGS-RSFF------TEIIASISDIKFAK---DGRHILSRDYMTLKLWDINM-----DSG--------PVATFQVHEYLR 383 (509)
Q Consensus 327 ~~~~-~~~~------~~~~~~i~~~~~s~---~~~~l~s~~~~~i~iwd~~~-----~~~--------~~~~~~~~~~~~ 383 (509)
.... ...+ -.....+..++.+| +++.|....-..-++|.+.+ ... .++.+-......
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s 188 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQS 188 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SE
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCC
Confidence 1110 0000 01123477777766 77777765322334444432 000 011111100010
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
-.++++++|.+.++--..+.|..|+...
T Consensus 189 ---------------~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 189 ---------------DGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ---------------CEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred ---------------ceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 1688999999988888999999999885
No 479
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=68.74 E-value=2.2e+02 Score=32.56 Aligned_cols=80 Identities=9% Similarity=0.189 Sum_probs=47.9
Q ss_pred cceEEEEECCCCCe-EEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 41 DIISAIEFDKTGDH-LATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 41 ~~I~~v~~s~~~~~-la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
+.|.+...+++|+. +.++.....+.+|++....-... |.......+.+-. ..
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~---------------p~~~~~L~L~dG~------------a~ 490 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPT---------------PRKTKTLQLADGK------------AQ 490 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccccC---------------ccceeeeeccCCc------------hh
Confidence 45667777788876 55555555668888876533110 1111122333322 34
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccch
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEK 151 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 151 (509)
..+|.+ +++ .|+.+..+|.++.=++...
T Consensus 491 A~~VgL--s~d--rLFvADseGkLYsa~l~~~ 518 (1774)
T PF11725_consen 491 AQSVGL--SND--RLFVADSEGKLYSADLPAA 518 (1774)
T ss_pred hhheee--cCC--eEEEEeCCCCEEecccccc
Confidence 667777 555 6888999998888777643
No 480
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.36 E-value=48 Score=35.94 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=28.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCC
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTK 73 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~ 73 (509)
.....++|+|...+||.|..+|.|+++-....+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 456789999999999999999999999876443
No 481
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=68.26 E-value=93 Score=28.13 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=41.2
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC------CCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG------DGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
|.|-+||+. +..++.+.... .....+ .++..| .|.+|+---.||+|..||..+|+.+.
T Consensus 222 G~VdvFd~~--G~l~~r~as~g-~LNaPW------------G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g- 285 (336)
T TIGR03118 222 GYVNVFTLN--GQLLRRVASSG-RLNAPW------------GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG- 285 (336)
T ss_pred ceEEEEcCC--CcEEEEeccCC-cccCCc------------eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee-
Confidence 789999987 57777774322 111111 444433 56677766679999999999998887
Q ss_pred eecc
Q 043890 433 TLEA 436 (509)
Q Consensus 433 ~~~~ 436 (509)
.|..
T Consensus 286 ~L~~ 289 (336)
T TIGR03118 286 QLLD 289 (336)
T ss_pred eecC
Confidence 4443
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=67.89 E-value=1.1e+02 Score=29.64 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.7
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
..|.+++..+.. +.+++.+.++.|.+||+..+
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeCC
Confidence 449999999987 99999999999999999853
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=67.18 E-value=99 Score=29.87 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=24.0
Q ss_pred eeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 398 KFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 398 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
|..+...+..+.|++...+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 33888988889999999999999999974
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=64.72 E-value=1.3e+02 Score=28.45 Aligned_cols=133 Identities=12% Similarity=0.177 Sum_probs=68.7
Q ss_pred eEEEEE--CC-CCCEEEE-E-cCCeEEEEEccCC-CceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEE
Q 043890 233 INSISN--NS-DGETFIS-A-DDLRINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 306 (509)
Q Consensus 233 v~~i~~--~~-~~~~l~~-~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~v 306 (509)
+..+|+ ++ +|.+.+. . .+|.+..|.+... ...+.-..+ ..+. -...+-.++..... ..|..+-++.-|.-
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV--R~f~-~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV--REFK-VGSQPEGCVVDDET-GRLYVGEEDVGIWR 233 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE--EEEE--SS-EEEEEEETTT-TEEEEEETTTEEEE
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE--EEec-CCCcceEEEEeccc-CCEEEecCccEEEE
Confidence 556665 44 4655443 4 7899999988632 211111000 1222 24478888888876 78999999988888
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec--CCC-EEEEec--CCeEEEEECCCCCCceEEEee
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK--DGR-HILSRD--YMTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~~~ 378 (509)
|+.+....... ..+..... ......|-.+++-. +++ ||++++ +++..|||.+.....+..+..
T Consensus 234 y~Aep~~~~~~--~~v~~~~g-------~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 234 YDAEPEGGNDR--TLVASADG-------DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EESSCCC-S----EEEEEBSS-------SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred EecCCCCCCcc--eeeecccc-------cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 88774331110 11111000 01124677777643 443 555543 589999999864454555543
No 485
>PRK10115 protease 2; Provisional
Probab=63.49 E-value=1.9e+02 Score=30.12 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=64.5
Q ss_pred CeEEEEECCCCCEEEEE-c-----CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-C---
Q 043890 232 HINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K--- 301 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-d--- 301 (509)
.+..+.++|++++|+.+ + ...|++.|+.++..+.. .+..- -..++|.+|+ +.|+.... +
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~~---~~~~~w~~D~-~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDNV---EPSFVWANDS-WTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccCc---ceEEEEeeCC-CEEEEEEecCCCC
Confidence 36678899999999876 3 35588888887653211 22211 1469999998 55544433 2
Q ss_pred --CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEE-EEEEecCCCEEEEe--c--CCeEEEEECC
Q 043890 302 --GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASIS-DIKFAKDGRHILSR--D--YMTLKLWDIN 367 (509)
Q Consensus 302 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~--~--~~~i~iwd~~ 367 (509)
..|..+++.++.... ...++... .... .+..+.++++++.. + ++.+.+++..
T Consensus 197 ~~~~v~~h~lgt~~~~d--~lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 197 LPYQVWRHTIGTPASQD--ELVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEECCCChhHC--eEEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 357777887763211 22333221 1122 33344488876653 2 3789999964
No 486
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=62.82 E-value=1.2e+02 Score=27.46 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=56.5
Q ss_pred eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-----CEEEEe-eCCCcEEEEeCCCCceeeee
Q 043890 360 TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-----LRVATG-SYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 360 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~-~~dg~i~iw~~~~~~~~~~~ 433 (509)
+|.+||+.+ .+.++++..+...... .+. +.++.+.... .+...+ +..+.|.|+|+.+++..+ .
T Consensus 35 KLv~~Dl~t-~~li~~~~~p~~~~~~-------~s~--lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~R-v 103 (287)
T PF03022_consen 35 KLVAFDLKT-NQLIRRYPFPPDIAPP-------DSF--LNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWR-V 103 (287)
T ss_dssp EEEEEETTT-TCEEEEEE--CCCS-T-------CGG--EEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEE-E
T ss_pred EEEEEECCC-CcEEEEEECChHHccc-------ccc--cceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEE-E
Confidence 688889887 5677776655433220 110 1155554421 233333 345689999999988766 5
Q ss_pred eccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC---CCcEEEEEecCceEEE
Q 043890 434 LEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP---TENSIACAAANSLYMY 507 (509)
Q Consensus 434 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p---~~~~la~~~~~~i~v~ 507 (509)
+..+..+.. .. ....+.|..+.....+..++.+| ++++|..+.-.+..+|
T Consensus 104 ~~~~~~~~p--------~~----------------~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly 156 (287)
T PF03022_consen 104 LHNSFSPDP--------DA----------------GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLY 156 (287)
T ss_dssp ETCGCTTS---------SS----------------EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEE
T ss_pred ecCCcceec--------cc----------------cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEE
Confidence 554432211 00 00112222333345577778766 6677777665444444
No 487
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=61.08 E-value=42 Score=29.31 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=49.7
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC----CeEEEEECCCCCCceEEEeec
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY----MTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~~~ 379 (509)
-.+||+.+++. +.+.... ..-+.+-.+-+||++|.+|++ ..+++++.... .........
T Consensus 48 s~~yD~~tn~~-----rpl~v~t-----------d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~-~~~~~w~e~ 110 (243)
T PF07250_consen 48 SVEYDPNTNTF-----RPLTVQT-----------DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS-DGTCDWTES 110 (243)
T ss_pred EEEEecCCCcE-----EeccCCC-----------CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC-CCCCCceEC
Confidence 46788888763 3333221 123444567789999999753 56888876430 000001000
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-cEEEEeC
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-LFRVFGC 424 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~ 424 (509)
... ....+.++ .+..-|||+.|+.|+.+. ...+|.-
T Consensus 111 ~~~-------m~~~RWYp--T~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 111 PND-------MQSGRWYP--TATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred ccc-------ccCCCccc--cceECCCCCEEEEeCcCCCcccccCC
Confidence 000 00011111 455668999999988774 3444443
No 488
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=1.1e+02 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=16.9
Q ss_pred CCCeEEeecCC--CeEEEEEccCCCC
Q 043890 51 TGDHLATGDRG--GRVVLFERTDTKD 74 (509)
Q Consensus 51 ~~~~la~g~~d--g~i~lw~~~~~~~ 74 (509)
+|.++.+.+.- ..|++||+.+++.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~ 80 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQE 80 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceE
Confidence 45666665543 4699999998876
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.42 E-value=59 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=12.7
Q ss_pred cceeeEEEEcCCCceEEEe
Q 043890 119 KINKIRWCQTANGALFLLS 137 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~ 137 (509)
--++|+. ++|+..++.+
T Consensus 58 fpNGVal--s~d~~~vlv~ 74 (89)
T PF03088_consen 58 FPNGVAL--SPDESFVLVA 74 (89)
T ss_dssp SEEEEEE---TTSSEEEEE
T ss_pred ccCeEEE--cCCCCEEEEE
Confidence 3678898 9999877766
No 490
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=58.45 E-value=39 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCeEEeecC-----CCeEEEEEccC
Q 043890 42 IISAIEFDKTGDHLATGDR-----GGRVVLFERTD 71 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~-----dg~i~lw~~~~ 71 (509)
.+.+++.-|||++|+.|.. +....|+.+..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECC
Confidence 4678999999999999853 33555666553
No 491
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=55.98 E-value=24 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=18.5
Q ss_pred EEEeeCCCcEEEEeCCCCceee
Q 043890 410 VATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+..++.+|.|+-.|.++|+.+-
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE
Confidence 4556889999999999998775
No 492
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=54.27 E-value=2.9e+02 Score=29.25 Aligned_cols=32 Identities=6% Similarity=-0.199 Sum_probs=26.9
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+++...-+.+++.+-.||+|.++|..+-+.+.
T Consensus 264 si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 264 SITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred EEEecccCcEEEEEEcCCeEEEEecCcchhhc
Confidence 66666677889999999999999999887665
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=54.09 E-value=65 Score=29.33 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=49.6
Q ss_pred cEEEEEEecCCCEEEEecC-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCc
Q 043890 340 SISDIKFAKDGRHILSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL 418 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 418 (509)
-|+++...++|.+|+++-. ..|.+.|-++ ++.+-.+.+....-..+ .-..+++-.|-+++-.+..++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~~----------~~~~f~~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFTL----------PATNFSWQHDARFLNESNDDGT 213 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcccc----------cCCcEeeccCCEEeccCCCCCE
Confidence 3677788889999999876 8999999886 67777776552210000 0003455556666666677889
Q ss_pred EEEEeC
Q 043890 419 FRVFGC 424 (509)
Q Consensus 419 i~iw~~ 424 (509)
|.|+|=
T Consensus 214 IslFDN 219 (299)
T PF14269_consen 214 ISLFDN 219 (299)
T ss_pred EEEEcC
Confidence 999985
No 494
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=53.45 E-value=71 Score=29.10 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=51.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccC-Ccchhhccchhhhcc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSH-EPEFDYLKSLEIEEK 119 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~ 119 (509)
--|++|...++|.+|++.-.-..|.+.+..+++. +..+.|. ..+|..
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I-----------------------~W~lgG~~~~df~~--------- 191 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI-----------------------IWRLGGKRNSDFTL--------- 191 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcE-----------------------EEEeCCCCCCcccc---------
Confidence 3467788889999999999888999999888876 5666555 222211
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEecc
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQ 149 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~ 149 (509)
....|+...+-+.+-....++.|.++|-.
T Consensus 192 -~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 192 -PATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred -cCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 22233224455555455678899999973
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=51.61 E-value=1.3e+02 Score=31.84 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c------CCeEEEEECCCCCCce
Q 043890 301 KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D------YMTLKLWDINMDSGPV 373 (509)
Q Consensus 301 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~------~~~i~iwd~~~~~~~~ 373 (509)
.+.|.+-|...... +.++.. +..+|.+-+|||||+.|+.+ + ...|++-|+.+.+.-+
T Consensus 328 ~~~L~~~D~dG~n~-----~~ve~~-----------~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~ 391 (912)
T TIGR02171 328 TGNLAYIDYTKGAS-----RAVEIE-----------DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGL 391 (912)
T ss_pred CCeEEEEecCCCCc-----eEEEec-----------CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCc
Confidence 35777777776542 322111 12578889999999999984 2 1358999998755555
Q ss_pred EEEeecccccc
Q 043890 374 ATFQVHEYLRP 384 (509)
Q Consensus 374 ~~~~~~~~~~~ 384 (509)
..+.-....+.
T Consensus 392 vkl~ve~aaip 402 (912)
T TIGR02171 392 VKLPVENAAIP 402 (912)
T ss_pred eEeeccccccc
Confidence 55554444433
No 496
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=51.26 E-value=1.7e+02 Score=25.64 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE----EecCCC--EEEE
Q 043890 282 ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK----FAKDGR--HILS 355 (509)
Q Consensus 282 i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~s~~~~--~l~s 355 (509)
|.--.-+|+. ..+++....+-+++||+...++ +.+... ..+.+. |--.|+ -+++
T Consensus 58 IwVh~t~P~k-S~vItt~Kk~Gl~VYDLsGkqL-----qs~~~G--------------k~NNVDLrygF~LgG~~idiaa 117 (364)
T COG4247 58 IWVHATNPDK-SLVITTVKKAGLRVYDLSGKQL-----QSVNPG--------------KYNNVDLRYGFQLGGQSIDIAA 117 (364)
T ss_pred eEeccCCcCc-ceEEEeeccCCeEEEecCCCee-----eecCCC--------------cccccccccCcccCCeEEEEEe
Confidence 3333445665 6788888888899999998764 333221 122222 222333 2444
Q ss_pred ecC---CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEc--CC-CC-EEEEeeCCCcEEEEeCC
Q 043890 356 RDY---MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS--GD-GL-RVATGSYSNLFRVFGCA 425 (509)
Q Consensus 356 ~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~-~~-~l~~~~~dg~i~iw~~~ 425 (509)
++| ..|.+|-+.-..+.+..+........ ..+..++.++.. |. |. +++....+|.|.-|.+-
T Consensus 118 ASdR~~~~i~~y~Idp~~~~L~sitD~n~p~s--------s~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~ 186 (364)
T COG4247 118 ASDRQNDKIVFYKIDPNPQYLESITDSNAPYS--------SSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLI 186 (364)
T ss_pred cccccCCeEEEEEeCCCccceeeccCCCCccc--------cCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEE
Confidence 443 77888888754455555544322211 111122244443 32 33 45556667888887764
No 497
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.25 E-value=29 Score=19.92 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.9
Q ss_pred CCCEEEEeeCCCcEEEEeCCC
Q 043890 406 DGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 406 ~~~~l~~~~~dg~i~iw~~~~ 426 (509)
.+..|+.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788899999999999764
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=50.02 E-value=49 Score=34.11 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=21.7
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
..++..| ++-++.+|.|.++...+..... .+..|
T Consensus 631 sla~~ed---~~was~gG~V~vi~~tt~~~~~-~leah 664 (925)
T KOG3522|consen 631 SLAFQED---FVWASEGGCVHVIPSTTFIRSW-DLEAH 664 (925)
T ss_pred chhhhhc---eeeeecCCceEEEechhccccc-hhHHH
Confidence 4555433 4457889999999988654444 44444
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=48.95 E-value=2e+02 Score=25.88 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=37.4
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE------cCCeEEEEECCCCc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS------SKGSIRLIDLRQSA 313 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~------~dg~i~vwd~~~~~ 313 (509)
..|.+||....+... .-.+-.+.|+++.|..+. ++++.|. ....+..||+.+..
T Consensus 16 ~~lC~yd~~~~qW~~--------~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS--------PGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeec--------CCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe
Confidence 458899988654321 223357889999998665 7777765 34568889988875
No 500
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=48.83 E-value=40 Score=17.70 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=19.1
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEe
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWK 147 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd 147 (509)
.|.+|+. ...+++.+.+.+.+++|.
T Consensus 3 ~i~aia~----g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAA----GDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEc----cCCEEEEEeCCCeEEecC
Confidence 4778876 334888888889999984
Done!