Query 043890
Match_columns 509
No_of_seqs 480 out of 2430
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 15:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 3.7E-48 1.3E-52 375.9 40.1 435 18-509 8-444 (447)
2 1nr0_A Actin interacting prote 100.0 1.7E-44 5.9E-49 362.6 41.5 403 35-509 54-565 (611)
3 1vyh_C Platelet-activating fac 100.0 2E-44 7E-49 344.1 36.4 286 33-509 101-409 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 7E-44 2.4E-48 326.5 38.2 286 36-509 9-300 (304)
5 3ow8_A WD repeat-containing pr 100.0 5E-44 1.7E-48 329.5 36.4 284 37-509 29-319 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 1E-42 3.5E-47 324.1 36.6 288 35-508 50-340 (340)
7 2ymu_A WD-40 repeat protein; u 100.0 8.9E-43 3.1E-47 349.3 38.0 377 35-509 11-455 (577)
8 2pbi_B Guanine nucleotide-bind 100.0 3.8E-42 1.3E-46 321.7 37.8 294 33-508 57-354 (354)
9 4gqb_B Methylosome protein 50; 100.0 6.3E-43 2.1E-47 324.4 32.2 295 39-509 29-329 (344)
10 1nr0_A Actin interacting prote 100.0 2.2E-42 7.6E-47 347.3 38.7 392 35-509 142-609 (611)
11 2ymu_A WD-40 repeat protein; u 100.0 4E-42 1.4E-46 344.6 37.8 356 35-508 216-577 (577)
12 4g56_B MGC81050 protein; prote 100.0 1.9E-42 6.6E-47 323.9 33.1 290 38-509 40-341 (357)
13 4ery_A WD repeat-containing pr 100.0 5E-41 1.7E-45 309.3 39.0 286 36-509 19-310 (312)
14 3iz6_a 40S ribosomal protein R 100.0 1.9E-41 6.6E-46 320.4 34.2 309 35-509 61-373 (380)
15 3frx_A Guanine nucleotide-bind 100.0 9.3E-41 3.2E-45 307.8 36.2 295 35-509 12-315 (319)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-40 6.2E-45 309.5 37.3 302 37-509 12-333 (345)
17 1erj_A Transcriptional repress 100.0 6.8E-40 2.3E-44 311.3 35.9 305 37-508 61-386 (393)
18 2xzm_R RACK1; ribosome, transl 100.0 1E-38 3.5E-43 297.6 39.1 303 35-508 16-337 (343)
19 2hes_X YDR267CP; beta-propelle 100.0 6.3E-39 2.1E-43 297.1 35.4 298 36-509 10-326 (330)
20 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-38 3.9E-43 347.3 38.4 377 35-509 610-1156(1249)
21 4e54_B DNA damage-binding prot 100.0 7.7E-39 2.6E-43 308.5 32.1 295 37-509 116-428 (435)
22 4aow_A Guanine nucleotide-bind 100.0 1.2E-37 4E-42 290.5 38.1 300 33-509 31-335 (340)
23 2pm9_A Protein WEB1, protein t 100.0 1.6E-39 5.5E-44 312.0 26.0 340 39-509 11-412 (416)
24 4gqb_B Methylosome protein 50; 100.0 4E-38 1.4E-42 292.1 33.4 251 37-429 79-334 (344)
25 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-38 4.9E-43 346.5 35.5 411 36-509 653-1205(1249)
26 3zwl_B Eukaryotic translation 100.0 1.6E-37 5.6E-42 292.9 38.0 290 35-508 27-343 (369)
27 1r5m_A SIR4-interacting protei 100.0 5E-38 1.7E-42 302.4 33.0 334 37-509 42-423 (425)
28 1pgu_A Actin interacting prote 100.0 4.9E-38 1.7E-42 317.4 34.0 401 38-509 16-612 (615)
29 3ei3_B DNA damage-binding prot 100.0 9.3E-38 3.2E-42 296.2 33.7 302 35-509 68-380 (383)
30 3ow8_A WD repeat-containing pr 100.0 4.1E-38 1.4E-42 290.0 30.2 258 20-425 61-320 (321)
31 3mkq_A Coatomer beta'-subunit; 100.0 2.3E-37 7.7E-42 322.9 39.6 328 36-509 9-384 (814)
32 1gxr_A ESG1, transducin-like e 100.0 4.6E-37 1.6E-41 286.0 36.7 284 37-508 48-334 (337)
33 2j04_B YDR362CP, TAU91; beta p 100.0 7.3E-39 2.5E-43 311.7 24.7 335 37-509 130-515 (524)
34 2oaj_A Protein SNI1; WD40 repe 100.0 9E-38 3.1E-42 324.8 33.7 437 37-508 14-658 (902)
35 1vyh_C Platelet-activating fac 100.0 7.3E-38 2.5E-42 298.8 30.2 245 35-425 145-410 (410)
36 3dm0_A Maltose-binding peripla 100.0 3.4E-37 1.2E-41 314.8 37.0 311 34-509 376-691 (694)
37 1sq9_A Antiviral protein SKI8; 100.0 5.7E-37 1.9E-41 292.4 33.5 315 37-509 13-393 (397)
38 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-36 5.2E-41 286.7 33.7 333 38-508 6-358 (372)
39 2ynn_A Coatomer subunit beta'; 100.0 1.4E-36 4.8E-41 278.0 31.8 244 98-508 6-256 (304)
40 2pm7_B Protein transport prote 100.0 8.5E-37 2.9E-41 278.4 29.8 254 37-425 6-284 (297)
41 1got_B GT-beta; complex (GTP-b 100.0 2.2E-36 7.5E-41 281.4 32.7 245 37-423 94-340 (340)
42 3frx_A Guanine nucleotide-bind 100.0 1.1E-36 3.8E-41 280.5 29.8 266 20-427 43-318 (319)
43 3k26_A Polycomb protein EED; W 100.0 1.8E-36 6.1E-41 285.5 31.8 303 38-509 16-364 (366)
44 3vl1_A 26S proteasome regulato 100.0 1.4E-36 4.7E-41 292.0 30.0 331 41-509 57-417 (420)
45 4g56_B MGC81050 protein; prote 100.0 1.4E-36 4.8E-41 284.1 28.5 253 35-429 89-346 (357)
46 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-35 5.3E-40 272.7 33.8 278 36-509 14-294 (313)
47 3i2n_A WD repeat-containing pr 100.0 4.2E-36 1.4E-40 282.0 30.0 305 37-509 15-351 (357)
48 3gre_A Serine/threonine-protei 100.0 6.7E-36 2.3E-40 288.7 32.0 344 37-508 60-437 (437)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.9E-36 2.7E-40 278.1 30.0 271 37-431 58-340 (345)
50 3bg1_A Protein SEC13 homolog; 100.0 2.4E-36 8.1E-41 278.0 25.4 255 36-425 9-292 (316)
51 4a11_B DNA excision repair pro 100.0 8.8E-35 3E-39 278.2 36.4 299 36-451 39-347 (408)
52 3dwl_C Actin-related protein 2 100.0 9.1E-37 3.1E-41 288.8 22.3 259 39-425 10-280 (377)
53 2xzm_R RACK1; ribosome, transl 100.0 1.4E-35 4.9E-40 276.3 29.7 258 35-428 71-342 (343)
54 1erj_A Transcriptional repress 100.0 1.5E-35 5.2E-40 281.4 30.4 257 41-426 124-389 (393)
55 2pbi_B Guanine nucleotide-bind 100.0 4.5E-35 1.6E-39 273.7 31.8 248 37-423 103-354 (354)
56 4gga_A P55CDC, cell division c 100.0 2.1E-34 7.2E-39 276.3 36.9 277 42-509 107-393 (420)
57 3jrp_A Fusion protein of prote 100.0 1.9E-35 6.5E-40 279.9 28.4 259 35-429 6-290 (379)
58 3iz6_a 40S ribosomal protein R 100.0 1.1E-35 3.7E-40 281.1 26.6 267 35-428 103-377 (380)
59 1yfq_A Cell cycle arrest prote 100.0 1.1E-34 3.9E-39 270.6 31.5 265 38-440 9-296 (342)
60 4h5i_A Guanine nucleotide-exch 100.0 4.4E-35 1.5E-39 274.8 28.7 199 228-509 131-341 (365)
61 1gxr_A ESG1, transducin-like e 100.0 2.8E-34 9.7E-39 267.2 31.7 283 39-508 8-293 (337)
62 2hes_X YDR267CP; beta-propelle 100.0 1.5E-34 5E-39 267.7 29.3 263 39-426 57-328 (330)
63 4ggc_A P55CDC, cell division c 100.0 2.3E-33 7.7E-38 258.9 36.3 277 42-509 27-313 (318)
64 4aez_A CDC20, WD repeat-contai 100.0 3.2E-34 1.1E-38 273.3 31.2 278 38-509 89-378 (401)
65 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-34 1.3E-38 297.7 34.3 446 38-509 96-730 (902)
66 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8E-34 2.7E-38 274.6 34.2 312 35-508 113-439 (445)
67 2pm7_B Protein transport prote 100.0 1.3E-33 4.3E-38 257.4 33.3 245 118-508 10-282 (297)
68 2pm9_A Protein WEB1, protein t 100.0 1.6E-34 5.6E-39 277.2 28.1 287 19-431 47-342 (416)
69 3v7d_B Cell division control p 100.0 2.8E-33 9.5E-38 272.5 36.0 320 35-506 116-457 (464)
70 4ery_A WD repeat-containing pr 100.0 2.1E-33 7E-38 258.4 33.2 247 36-425 61-311 (312)
71 1r5m_A SIR4-interacting protei 100.0 9.5E-34 3.3E-38 272.5 30.9 278 39-452 107-408 (425)
72 3dm0_A Maltose-binding peripla 100.0 7.6E-34 2.6E-38 290.0 30.7 261 35-425 425-692 (694)
73 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-34 1.9E-38 269.9 27.4 319 39-501 14-350 (588)
74 3mmy_A MRNA export factor; mRN 100.0 1.9E-33 6.6E-38 264.9 30.3 281 36-451 35-328 (368)
75 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-33 7.6E-38 262.4 30.3 273 36-431 7-342 (351)
76 4aez_A CDC20, WD repeat-contai 100.0 2.7E-33 9.2E-38 266.9 30.5 252 39-438 133-392 (401)
77 1pgu_A Actin interacting prote 100.0 4.6E-34 1.6E-38 288.4 26.5 370 34-451 57-597 (615)
78 4gga_A P55CDC, cell division c 100.0 6.7E-33 2.3E-37 265.8 32.9 256 38-438 145-406 (420)
79 3vl1_A 26S proteasome regulato 100.0 1.3E-32 4.4E-37 264.3 34.5 267 41-451 98-398 (420)
80 3mkq_A Coatomer beta'-subunit; 100.0 7.9E-33 2.7E-37 288.6 33.7 321 36-508 51-420 (814)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-33 1E-37 266.8 27.8 275 43-453 37-328 (402)
82 3bg1_A Protein SEC13 homolog; 100.0 1E-33 3.5E-38 260.3 23.0 244 118-508 14-290 (316)
83 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-32 4.1E-37 265.4 31.5 269 38-508 131-411 (435)
84 3jro_A Fusion protein of prote 100.0 1.2E-33 4.1E-38 290.0 24.5 258 36-429 5-288 (753)
85 4aow_A Guanine nucleotide-bind 100.0 2.7E-32 9.4E-37 254.2 31.0 271 20-428 64-339 (340)
86 4h5i_A Guanine nucleotide-exch 100.0 8.6E-33 2.9E-37 259.1 25.0 256 37-427 70-344 (365)
87 3i2n_A WD repeat-containing pr 100.0 2.3E-32 7.7E-37 256.5 26.2 257 37-429 62-356 (357)
88 3k26_A Polycomb protein EED; W 100.0 6.8E-33 2.3E-37 261.0 22.1 262 39-425 68-365 (366)
89 3gre_A Serine/threonine-protei 100.0 8.8E-33 3E-37 266.8 23.4 305 47-509 34-357 (437)
90 1sq9_A Antiviral protein SKI8; 100.0 3.2E-32 1.1E-36 259.4 26.7 293 34-428 56-397 (397)
91 3v7d_B Cell division control p 100.0 3.7E-31 1.3E-35 257.5 33.6 283 36-447 158-442 (464)
92 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-31 3.8E-36 250.1 28.6 249 44-429 40-295 (343)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.8E-31 1.7E-35 255.3 34.0 237 118-448 103-364 (450)
94 3dwl_C Actin-related protein 2 100.0 8.1E-33 2.8E-37 261.7 20.6 244 118-508 12-278 (377)
95 4e54_B DNA damage-binding prot 100.0 3.5E-32 1.2E-36 261.9 25.1 263 36-430 160-434 (435)
96 3zwl_B Eukaryotic translation 100.0 2.6E-31 9E-36 250.4 30.2 259 36-431 70-351 (369)
97 2xyi_A Probable histone-bindin 100.0 2E-31 6.7E-36 256.2 29.2 268 36-427 124-411 (430)
98 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-31 7.5E-36 251.3 28.6 244 118-508 9-271 (372)
99 2xyi_A Probable histone-bindin 100.0 7E-31 2.4E-35 252.4 32.1 273 116-508 127-407 (430)
100 3jrp_A Fusion protein of prote 100.0 1.3E-30 4.4E-35 246.6 32.4 253 98-508 4-284 (379)
101 4gq1_A NUP37; propeller, trans 100.0 1.1E-31 3.9E-36 254.5 24.9 270 120-508 92-386 (393)
102 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-30 7.5E-35 242.1 33.1 307 37-508 16-333 (355)
103 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-31 5.7E-36 260.0 24.5 265 37-425 204-516 (524)
104 4ggc_A P55CDC, cell division c 100.0 3.6E-30 1.2E-34 237.4 31.8 248 37-428 64-317 (318)
105 3ei3_B DNA damage-binding prot 100.0 5.5E-31 1.9E-35 249.6 27.0 255 38-426 116-382 (383)
106 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-30 6.6E-35 242.4 30.3 310 99-509 5-335 (351)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-30 4.1E-35 248.8 28.2 258 35-430 76-346 (402)
108 3odt_A Protein DOA1; ubiquitin 100.0 5.8E-30 2E-34 235.4 29.1 257 20-431 42-301 (313)
109 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-29 3.8E-34 245.6 31.7 257 36-452 155-421 (445)
110 4a11_B DNA excision repair pro 100.0 1E-29 3.4E-34 243.0 30.9 260 38-431 97-370 (408)
111 2j04_A TAU60, YPL007P, hypothe 100.0 6.9E-30 2.4E-34 242.0 28.9 253 117-452 15-281 (588)
112 3dw8_B Serine/threonine-protei 100.0 9.9E-30 3.4E-34 246.3 27.3 291 115-509 26-371 (447)
113 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4E-33 237.6 31.7 275 39-508 121-429 (433)
114 3jro_A Fusion protein of prote 100.0 2.2E-29 7.6E-34 258.4 27.7 255 99-509 3-283 (753)
115 1yfq_A Cell cycle arrest prote 100.0 6.2E-29 2.1E-33 231.6 28.2 275 20-424 36-322 (342)
116 1p22_A F-BOX/WD-repeat protein 100.0 5.3E-29 1.8E-33 239.9 27.8 241 36-431 169-419 (435)
117 4gq1_A NUP37; propeller, trans 100.0 1.5E-29 5.2E-34 239.8 19.0 262 41-424 90-387 (393)
118 1l0q_A Surface layer protein; 100.0 1.8E-27 6.1E-32 226.1 33.0 232 53-437 3-243 (391)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.9E-28 2.3E-32 233.2 29.7 256 38-425 100-390 (450)
120 3mmy_A MRNA export factor; mRN 100.0 4.6E-28 1.6E-32 228.1 26.5 274 20-425 67-345 (368)
121 1l0q_A Surface layer protein; 100.0 3.1E-26 1.1E-30 217.6 36.4 259 39-450 30-301 (391)
122 2w18_A PALB2, fancn, partner a 100.0 1.2E-26 4.2E-31 206.4 26.9 188 240-509 143-355 (356)
123 1nir_A Nitrite reductase; hemo 100.0 1.2E-25 4.1E-30 220.6 33.8 324 47-509 144-512 (543)
124 3vu4_A KMHSV2; beta-propeller 99.9 9.9E-26 3.4E-30 210.5 28.5 225 118-509 20-269 (355)
125 3lrv_A PRE-mRNA-splicing facto 99.9 1.4E-26 4.7E-31 215.6 22.6 245 40-425 76-332 (343)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.1E-26 2.4E-30 215.8 25.8 218 227-494 175-410 (415)
127 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-25 2.3E-29 226.1 35.1 327 40-508 36-456 (741)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-25 3.8E-30 214.4 26.3 262 36-452 113-411 (415)
129 3bws_A Protein LP49; two-domai 99.9 1.4E-25 4.7E-30 216.2 27.3 239 37-425 166-431 (433)
130 1k32_A Tricorn protease; prote 99.9 1.6E-25 5.4E-30 238.5 29.6 381 35-507 47-498 (1045)
131 2w18_A PALB2, fancn, partner a 99.9 1.9E-25 6.7E-30 198.7 24.1 161 227-424 175-355 (356)
132 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-23 4.3E-28 216.1 27.9 325 42-501 18-429 (723)
133 1nir_A Nitrite reductase; hemo 99.9 3.3E-23 1.1E-27 203.3 28.9 319 43-438 181-525 (543)
134 1k32_A Tricorn protease; prote 99.9 1.2E-23 4.1E-28 224.1 27.4 370 37-509 200-635 (1045)
135 3u4y_A Uncharacterized protein 99.9 2.4E-22 8.3E-27 186.1 32.2 282 46-509 3-302 (331)
136 3vgz_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 186.3 32.2 256 39-431 39-308 (353)
137 2ojh_A Uncharacterized protein 99.9 9.8E-23 3.3E-27 185.3 25.3 255 57-501 17-291 (297)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2.5E-22 8.4E-27 205.8 29.6 276 118-509 82-433 (706)
139 1ri6_A Putative isomerase YBHE 99.9 1.1E-21 3.6E-26 182.6 28.0 212 118-425 38-261 (343)
140 2ojh_A Uncharacterized protein 99.9 5.5E-21 1.9E-25 173.7 27.9 236 35-417 36-293 (297)
141 1ri6_A Putative isomerase YBHE 99.9 2.1E-20 7.2E-25 173.8 31.6 283 37-450 34-334 (343)
142 3o4h_A Acylamino-acid-releasin 99.9 9.9E-22 3.4E-26 196.5 23.0 244 39-430 20-278 (582)
143 3u4y_A Uncharacterized protein 99.9 6.1E-20 2.1E-24 169.8 31.0 255 39-428 39-306 (331)
144 3hfq_A Uncharacterized protein 99.9 2.4E-20 8.2E-25 173.8 28.1 272 37-430 36-323 (347)
145 2ecf_A Dipeptidyl peptidase IV 99.9 4.3E-21 1.5E-25 197.8 24.5 281 42-453 110-439 (741)
146 3hfq_A Uncharacterized protein 99.9 9.6E-20 3.3E-24 169.7 30.9 175 228-425 83-270 (347)
147 1pby_B Quinohemoprotein amine 99.9 3.5E-21 1.2E-25 178.6 21.0 230 53-431 2-274 (337)
148 1z68_A Fibroblast activation p 99.9 7.5E-21 2.6E-25 195.2 24.9 329 45-508 20-440 (719)
149 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-20 8.2E-25 191.0 27.6 281 41-453 82-415 (706)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 9E-21 3.1E-25 181.1 20.7 230 39-368 35-278 (434)
151 4a5s_A Dipeptidyl peptidase 4 99.9 2.2E-19 7.5E-24 184.3 31.2 259 42-431 18-358 (740)
152 1jmx_B Amine dehydrogenase; ox 99.9 3.7E-20 1.3E-24 172.6 22.4 261 45-437 4-335 (349)
153 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-20 1.5E-24 189.7 25.0 291 42-452 62-423 (723)
154 1pby_B Quinohemoprotein amine 99.9 7E-20 2.4E-24 169.8 23.4 249 42-438 35-321 (337)
155 3pe7_A Oligogalacturonate lyas 99.9 1.1E-19 3.8E-24 172.1 25.2 284 46-507 41-378 (388)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 5.8E-19 2E-23 168.6 29.5 229 38-368 90-333 (434)
157 3scy_A Hypothetical bacterial 99.8 6.6E-18 2.3E-22 158.2 33.8 289 39-447 48-360 (361)
158 3scy_A Hypothetical bacterial 99.8 4E-18 1.4E-22 159.6 30.6 212 118-425 50-290 (361)
159 3vgz_A Uncharacterized protein 99.8 2.3E-18 7.9E-23 160.7 26.0 229 118-451 41-284 (353)
160 1jmx_B Amine dehydrogenase; ox 99.8 2E-18 6.9E-23 160.8 23.0 162 122-377 4-183 (349)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.3E-18 1.5E-22 159.5 25.0 259 41-427 40-342 (365)
162 3o4h_A Acylamino-acid-releasin 99.8 1.4E-18 4.8E-23 173.6 21.2 209 118-445 22-244 (582)
163 1q7f_A NHL, brain tumor CG1071 99.8 8.9E-16 3E-20 138.6 31.4 269 19-428 10-282 (286)
164 1z68_A Fibroblast activation p 99.8 7.5E-18 2.6E-22 172.9 19.9 279 42-453 61-424 (719)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-16 4.1E-21 149.7 26.4 220 118-429 40-295 (365)
166 3azo_A Aminopeptidase; POP fam 99.8 1.7E-16 5.9E-21 161.2 29.2 274 37-444 20-341 (662)
167 2dg1_A DRP35, lactonase; beta 99.8 5.7E-16 1.9E-20 143.2 27.6 249 41-431 6-267 (333)
168 3c5m_A Oligogalacturonate lyas 99.8 4.7E-17 1.6E-21 154.4 20.6 308 39-429 34-387 (396)
169 4a5s_A Dipeptidyl peptidase 4 99.7 1.1E-16 3.9E-21 164.1 22.0 153 118-356 17-188 (740)
170 2oiz_A Aromatic amine dehydrog 99.7 3.4E-15 1.2E-19 139.0 28.9 278 45-451 54-360 (361)
171 3pe7_A Oligogalacturonate lyas 99.7 3E-16 1E-20 148.5 19.0 171 228-425 185-381 (388)
172 2oiz_A Aromatic amine dehydrog 99.7 5E-15 1.7E-19 137.9 26.7 177 232-437 109-305 (361)
173 3fvz_A Peptidyl-glycine alpha- 99.7 7.3E-15 2.5E-19 135.3 26.1 261 40-426 23-322 (329)
174 1q7f_A NHL, brain tumor CG1071 99.7 3.8E-14 1.3E-18 127.8 29.3 243 118-508 30-277 (286)
175 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.9E-18 134.6 34.9 321 50-509 165-536 (567)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.7E-14 5.7E-19 132.8 26.4 282 118-508 24-319 (329)
177 2z2n_A Virginiamycin B lyase; 99.7 1.7E-12 5.7E-17 117.7 35.5 240 39-428 13-256 (299)
178 3e5z_A Putative gluconolactona 99.6 5.2E-14 1.8E-18 127.6 24.0 243 39-429 26-289 (296)
179 2xdw_A Prolyl endopeptidase; a 99.6 5.7E-14 1.9E-18 143.5 27.1 249 39-428 123-416 (710)
180 3azo_A Aminopeptidase; POP fam 99.6 1.5E-14 5.3E-19 146.8 22.7 169 231-431 188-374 (662)
181 1rwi_B Serine/threonine-protei 99.6 1.5E-13 5E-18 122.8 26.5 240 42-429 25-267 (270)
182 3e5z_A Putative gluconolactona 99.6 2E-13 7E-18 123.7 27.0 232 118-508 28-283 (296)
183 2gop_A Trilobed protease; beta 99.6 6.2E-14 2.1E-18 130.3 23.9 223 39-429 13-294 (347)
184 2dg1_A DRP35, lactonase; beta 99.6 3.8E-13 1.3E-17 124.2 28.8 245 39-417 43-301 (333)
185 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-13 7.4E-18 139.2 29.1 227 118-451 125-392 (710)
186 2bkl_A Prolyl endopeptidase; m 99.6 5.4E-14 1.8E-18 143.2 23.8 249 39-429 119-400 (695)
187 3c5m_A Oligogalacturonate lyas 99.6 1.3E-14 4.6E-19 137.4 17.5 172 236-452 86-296 (396)
188 1qks_A Cytochrome CD1 nitrite 99.6 2.5E-12 8.6E-17 125.8 31.2 318 40-436 196-547 (567)
189 2bkl_A Prolyl endopeptidase; m 99.6 7.3E-13 2.5E-17 134.9 26.0 178 234-450 171-374 (695)
190 2qc5_A Streptogramin B lactona 99.6 2.9E-11 9.9E-16 109.5 33.6 241 40-429 19-262 (300)
191 2gop_A Trilobed protease; beta 99.6 4.7E-13 1.6E-17 124.3 21.6 150 232-438 172-340 (347)
192 3no2_A Uncharacterized protein 99.5 4.3E-12 1.5E-16 113.0 25.2 247 51-437 4-262 (276)
193 3dsm_A Uncharacterized protein 99.5 4.1E-12 1.4E-16 116.6 25.1 160 231-430 84-257 (328)
194 1rwi_B Serine/threonine-protei 99.5 1.2E-11 4.1E-16 110.3 26.4 192 232-508 68-261 (270)
195 1yr2_A Prolyl oligopeptidase; 99.5 2.2E-12 7.4E-17 132.3 24.1 247 39-429 161-444 (741)
196 3sjl_D Methylamine dehydrogena 99.5 1E-11 3.5E-16 113.8 25.4 250 46-431 38-325 (386)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.1E-11 3.7E-16 113.3 25.7 201 229-508 69-296 (314)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.5E-16 112.7 25.9 243 41-426 18-299 (314)
199 3dsm_A Uncharacterized protein 99.5 4.5E-12 1.6E-16 116.3 22.8 249 41-437 44-311 (328)
200 1yr2_A Prolyl oligopeptidase; 99.5 7.9E-12 2.7E-16 128.2 25.1 181 234-451 212-419 (741)
201 2mad_H Methylamine dehydrogena 99.4 3.3E-10 1.1E-14 105.3 31.8 173 233-434 127-314 (373)
202 2z2n_A Virginiamycin B lyase; 99.4 3.8E-10 1.3E-14 102.1 31.0 221 118-451 15-237 (299)
203 3no2_A Uncharacterized protein 99.4 5.3E-11 1.8E-15 105.9 24.2 165 232-436 38-204 (276)
204 2mad_H Methylamine dehydrogena 99.4 1.5E-09 5E-14 101.0 32.6 256 45-431 70-355 (373)
205 3g4e_A Regucalcin; six bladed 99.4 2.4E-10 8.3E-15 103.3 26.0 179 231-447 54-249 (297)
206 3hrp_A Uncharacterized protein 99.4 7.4E-10 2.5E-14 104.5 29.9 268 41-424 131-408 (409)
207 3iuj_A Prolyl endopeptidase; h 99.4 6.3E-11 2.2E-15 120.3 24.2 245 39-429 127-408 (693)
208 3g4e_A Regucalcin; six bladed 99.4 2.6E-10 8.8E-15 103.1 25.4 231 43-415 15-261 (297)
209 3dr2_A Exported gluconolactona 99.3 3.2E-10 1.1E-14 102.9 24.1 233 38-418 42-299 (305)
210 3sjl_D Methylamine dehydrogena 99.3 4.5E-10 1.5E-14 103.0 24.5 274 45-449 82-384 (386)
211 3c75_H MADH, methylamine dehyd 99.3 1.3E-09 4.3E-14 101.9 26.3 87 343-449 323-423 (426)
212 2qc5_A Streptogramin B lactona 99.3 4.9E-09 1.7E-13 94.7 29.5 221 118-451 20-242 (300)
213 2qe8_A Uncharacterized protein 99.3 1.2E-10 4.3E-15 107.5 18.5 260 41-449 17-301 (343)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 2.2E-09 7.5E-14 98.3 26.7 167 231-437 90-269 (326)
215 1xip_A Nucleoporin NUP159; bet 99.3 1.6E-10 5.3E-15 106.5 18.1 142 229-412 87-230 (388)
216 3hrp_A Uncharacterized protein 99.3 4.1E-09 1.4E-13 99.4 27.9 222 118-430 131-358 (409)
217 3dr2_A Exported gluconolactona 99.3 1.5E-09 5.1E-14 98.5 24.0 193 230-508 85-303 (305)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 2.1E-09 7.2E-14 98.4 24.8 228 43-416 51-292 (326)
219 1xip_A Nucleoporin NUP159; bet 99.3 1.9E-10 6.6E-15 105.9 17.6 153 232-429 39-194 (388)
220 2ece_A 462AA long hypothetical 99.2 3E-08 1E-12 91.5 26.4 169 235-414 192-399 (462)
221 3iuj_A Prolyl endopeptidase; h 99.2 4.3E-09 1.5E-13 106.9 22.8 176 234-451 178-383 (693)
222 1mda_H Methylamine dehydrogena 99.1 9.1E-09 3.1E-13 94.6 19.9 79 344-440 269-359 (368)
223 3c75_H MADH, methylamine dehyd 99.1 9.1E-09 3.1E-13 96.2 18.3 257 45-376 122-409 (426)
224 1kb0_A Quinohemoprotein alcoho 99.0 1.1E-07 3.7E-12 95.8 26.1 175 235-437 247-517 (677)
225 1npe_A Nidogen, entactin; glyc 99.0 1.7E-06 5.8E-11 76.5 28.6 176 232-451 80-263 (267)
226 1yiq_A Quinohemoprotein alcoho 98.9 4.9E-07 1.7E-11 91.2 27.0 184 235-437 239-515 (689)
227 2hz6_A Endoplasmic reticulum t 98.9 6.4E-10 2.2E-14 103.6 5.3 163 239-450 46-215 (369)
228 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.5E-06 5.2E-11 81.2 27.1 281 52-431 53-342 (376)
229 2iwa_A Glutamine cyclotransfer 98.8 3.5E-06 1.2E-10 73.1 25.4 207 231-507 21-233 (266)
230 2hz6_A Endoplasmic reticulum t 98.8 3.4E-09 1.1E-13 98.7 7.0 188 51-377 8-200 (369)
231 1mda_H Methylamine dehydrogena 98.8 3.7E-07 1.3E-11 83.9 19.2 255 45-381 69-358 (368)
232 1fwx_A Nitrous oxide reductase 98.8 3.8E-07 1.3E-11 87.4 19.3 84 340-440 278-384 (595)
233 3hxj_A Pyrrolo-quinoline quino 98.8 5.6E-07 1.9E-11 82.4 18.7 150 233-431 139-288 (330)
234 2ece_A 462AA long hypothetical 98.7 2.9E-06 9.8E-11 78.5 22.5 213 240-509 93-350 (462)
235 3nol_A Glutamine cyclotransfer 98.7 5.3E-06 1.8E-10 70.9 22.2 173 220-436 32-210 (262)
236 1yiq_A Quinohemoprotein alcoho 98.7 3.9E-06 1.3E-10 84.7 25.2 77 52-156 70-146 (689)
237 2qe8_A Uncharacterized protein 98.7 2.7E-06 9.3E-11 78.3 22.1 179 231-423 17-223 (343)
238 3hxj_A Pyrrolo-quinoline quino 98.7 1.1E-06 3.7E-11 80.4 19.4 209 242-507 107-320 (330)
239 3nok_A Glutaminyl cyclase; bet 98.7 3.8E-06 1.3E-10 71.8 20.8 173 220-435 44-218 (268)
240 1kb0_A Quinohemoprotein alcoho 98.7 2.8E-06 9.7E-11 85.5 23.3 119 250-377 189-354 (677)
241 2fp8_A Strictosidine synthase; 98.7 4.6E-06 1.6E-10 76.0 22.1 155 233-426 128-313 (322)
242 2p4o_A Hypothetical protein; p 98.7 3.6E-05 1.2E-09 69.4 27.2 150 236-417 122-279 (306)
243 3mbr_X Glutamine cyclotransfer 98.6 3.1E-05 1.1E-09 65.7 23.8 174 220-435 10-187 (243)
244 4a2l_A BT_4663, two-component 98.6 0.00084 2.9E-08 69.3 39.4 247 231-508 310-568 (795)
245 4a2l_A BT_4663, two-component 98.6 0.00065 2.2E-08 70.1 37.6 251 231-508 263-523 (795)
246 1kv9_A Type II quinohemoprotei 98.6 2.4E-05 8.2E-10 78.6 25.5 179 235-437 234-498 (668)
247 3q7m_A Lipoprotein YFGL, BAMB; 98.6 2.5E-05 8.6E-10 72.8 24.2 268 51-423 102-375 (376)
248 1npe_A Nidogen, entactin; glyc 98.6 9.2E-05 3.2E-09 65.2 26.5 119 232-378 123-247 (267)
249 2p4o_A Hypothetical protein; p 98.5 0.00017 5.7E-09 65.0 28.2 165 232-429 73-244 (306)
250 2iwa_A Glutamine cyclotransfer 98.5 1.1E-05 3.7E-10 69.9 19.2 164 235-426 70-237 (266)
251 3v64_C Agrin; beta propeller, 98.5 0.00029 9.8E-09 64.7 29.5 170 233-444 118-292 (349)
252 3v65_B Low-density lipoprotein 98.5 0.00018 6.1E-09 67.1 27.7 172 233-446 161-337 (386)
253 3nol_A Glutamine cyclotransfer 98.5 1.9E-05 6.5E-10 67.6 18.8 147 242-416 96-245 (262)
254 1fwx_A Nitrous oxide reductase 98.4 1.7E-05 5.7E-10 76.2 18.8 148 240-428 99-310 (595)
255 2fp8_A Strictosidine synthase; 98.4 9.8E-05 3.3E-09 67.1 23.5 160 232-431 81-273 (322)
256 2ad6_A Methanol dehydrogenase 98.4 0.00016 5.5E-09 71.1 25.9 60 359-436 444-503 (571)
257 2xe4_A Oligopeptidase B; hydro 98.4 0.00045 1.5E-08 70.6 30.1 71 42-151 175-257 (751)
258 3qqz_A Putative uncharacterize 98.4 0.0005 1.7E-08 59.2 25.2 177 232-425 71-252 (255)
259 3mbr_X Glutamine cyclotransfer 98.3 7.8E-05 2.7E-09 63.2 19.3 148 242-416 74-224 (243)
260 3qqz_A Putative uncharacterize 98.3 0.00029 9.9E-09 60.6 22.8 220 40-366 26-251 (255)
261 3v9f_A Two-component system se 98.3 0.0042 1.5E-07 63.9 35.9 280 39-450 311-594 (781)
262 3nok_A Glutaminyl cyclase; bet 98.3 4E-05 1.4E-09 65.5 16.8 152 236-415 101-254 (268)
263 1k3i_A Galactose oxidase precu 98.3 0.00012 4.2E-09 73.6 22.4 73 45-152 190-276 (656)
264 3v9f_A Two-component system se 98.3 0.0054 1.8E-07 63.1 34.8 168 230-430 312-482 (781)
265 1ijq_A LDL receptor, low-densi 98.2 0.0026 9E-08 57.3 31.0 164 233-436 79-247 (316)
266 1w6s_A Methanol dehydrogenase 98.2 0.00091 3.1E-08 65.8 26.8 30 405-435 482-511 (599)
267 1flg_A Protein (quinoprotein e 98.2 0.0009 3.1E-08 65.9 25.8 60 359-436 466-525 (582)
268 3p5b_L Low density lipoprotein 98.1 0.0062 2.1E-07 56.9 30.6 174 232-446 160-339 (400)
269 4hw6_A Hypothetical protein, I 98.1 0.0032 1.1E-07 59.4 27.0 183 233-425 230-432 (433)
270 2xe4_A Oligopeptidase B; hydro 98.1 0.00028 9.6E-09 72.1 20.9 114 232-369 175-305 (751)
271 3tc9_A Hypothetical hydrolase; 98.1 0.0011 3.8E-08 62.6 23.6 71 233-311 228-301 (430)
272 2ad6_A Methanol dehydrogenase 98.1 0.0015 5.1E-08 64.2 24.9 27 130-156 114-140 (571)
273 1k3i_A Galactose oxidase precu 98.0 0.0014 4.7E-08 65.9 24.0 73 233-313 245-325 (656)
274 3m0c_C LDL receptor, low-densi 98.0 0.012 4E-07 59.9 29.9 162 232-435 472-640 (791)
275 3v65_B Low-density lipoprotein 97.9 0.0083 2.8E-07 55.7 25.9 120 232-377 203-326 (386)
276 3sov_A LRP-6, low-density lipo 97.9 0.011 3.7E-07 53.2 28.0 160 233-436 81-247 (318)
277 3v64_C Agrin; beta propeller, 97.8 0.018 6.2E-07 52.6 28.5 120 232-377 160-283 (349)
278 1w6s_A Methanol dehydrogenase 97.8 0.0071 2.4E-07 59.5 24.2 85 284-377 245-350 (599)
279 4hw6_A Hypothetical protein, I 97.8 0.015 5.2E-07 54.8 25.3 173 232-428 183-375 (433)
280 1ijq_A LDL receptor, low-densi 97.8 0.02 6.8E-07 51.5 25.4 170 244-452 3-177 (316)
281 2p9w_A MAL S 1 allergenic prot 97.8 0.0099 3.4E-07 52.7 21.9 122 233-368 65-215 (334)
282 3tc9_A Hypothetical hydrolase; 97.7 0.0038 1.3E-07 59.0 20.5 115 281-429 138-260 (430)
283 1n7d_A LDL receptor, low-densi 97.7 0.00044 1.5E-08 69.7 14.8 175 233-447 455-634 (699)
284 2xbg_A YCF48-like protein; pho 97.7 0.025 8.5E-07 51.2 31.5 156 233-427 124-279 (327)
285 3kya_A Putative phosphatase; s 97.7 0.023 7.7E-07 54.0 24.6 117 232-368 187-341 (496)
286 3sre_A PON1, serum paraoxonase 97.7 0.011 3.9E-07 53.5 21.2 167 232-426 51-252 (355)
287 3p5b_L Low density lipoprotein 97.6 0.052 1.8E-06 50.6 25.4 171 243-452 84-259 (400)
288 1kv9_A Type II quinohemoprotei 97.6 0.015 5E-07 58.4 22.7 62 301-380 437-499 (668)
289 4a0p_A LRP6, LRP-6, low-densit 97.5 0.1 3.6E-06 51.7 30.6 155 233-431 82-242 (628)
290 3amr_A 3-phytase; beta-propell 97.4 0.054 1.8E-06 48.5 21.5 158 250-435 98-272 (355)
291 3kya_A Putative phosphatase; s 97.4 0.017 5.9E-07 54.8 19.3 116 281-425 140-277 (496)
292 2xbg_A YCF48-like protein; pho 97.4 0.021 7.2E-07 51.6 19.3 116 231-366 205-320 (327)
293 1flg_A Protein (quinoprotein e 97.3 0.087 3E-06 51.8 24.7 63 301-381 465-528 (582)
294 2ism_A Putative oxidoreductase 97.3 0.06 2.1E-06 49.2 22.0 26 119-147 32-57 (352)
295 3ei3_A DNA damage-binding prot 97.3 0.25 8.5E-06 52.7 31.1 35 40-74 553-594 (1158)
296 3amr_A 3-phytase; beta-propell 97.3 0.084 2.9E-06 47.3 21.5 147 242-425 40-209 (355)
297 3m0c_C LDL receptor, low-densi 97.3 0.2 6.9E-06 50.9 27.2 113 232-368 515-632 (791)
298 3sov_A LRP-6, low-density lipo 97.3 0.098 3.4E-06 46.9 25.1 120 232-377 123-246 (318)
299 2p9w_A MAL S 1 allergenic prot 97.2 0.059 2E-06 47.8 19.6 176 233-426 15-215 (334)
300 3pbp_A Nucleoporin NUP82; beta 97.1 0.12 4.2E-06 47.3 20.6 166 238-422 28-208 (452)
301 1n7d_A LDL receptor, low-densi 97.0 0.0031 1.1E-07 63.6 11.0 120 233-376 498-621 (699)
302 3a9g_A Putative uncharacterize 97.0 0.19 6.6E-06 45.8 23.3 27 118-147 29-55 (354)
303 3s94_A LRP-6, low-density lipo 97.0 0.32 1.1E-05 48.1 27.6 157 232-431 85-248 (619)
304 2g8s_A Glucose/sorbosone dehyd 97.0 0.2 7E-06 45.6 25.8 28 119-148 19-46 (353)
305 3pbp_A Nucleoporin NUP82; beta 96.8 0.29 9.8E-06 45.0 22.1 153 301-508 40-209 (452)
306 2xzh_A Clathrin heavy chain 1; 96.7 0.27 9.3E-06 43.3 27.3 170 231-431 152-337 (365)
307 3a9g_A Putative uncharacterize 96.5 0.46 1.6E-05 43.2 22.9 27 41-68 29-55 (354)
308 2vpj_A Kelch-like protein 12; 96.5 0.41 1.4E-05 42.3 19.8 149 241-430 112-282 (301)
309 3sre_A PON1, serum paraoxonase 96.4 0.54 1.9E-05 42.5 22.8 153 233-425 114-297 (355)
310 1bpo_A Protein (clathrin); cla 96.3 0.7 2.4E-05 42.6 29.6 170 231-431 151-336 (494)
311 2g8s_A Glucose/sorbosone dehyd 96.2 0.72 2.4E-05 42.0 24.5 30 41-70 18-47 (353)
312 1tl2_A L10, protein (tachylect 96.2 0.11 3.9E-06 42.8 12.6 67 231-303 135-202 (236)
313 2ism_A Putative oxidoreductase 96.1 0.56 1.9E-05 42.7 18.8 113 232-356 32-152 (352)
314 4a0p_A LRP6, LRP-6, low-densit 96.1 1.3 4.5E-05 43.8 40.5 103 400-507 393-504 (628)
315 1tl2_A L10, protein (tachylect 95.9 0.3 1E-05 40.3 13.8 108 232-362 42-157 (236)
316 3s94_A LRP-6, low-density lipo 95.9 1.5 5.2E-05 43.3 36.4 103 400-507 396-506 (619)
317 1cru_A Protein (soluble quinop 95.9 0.61 2.1E-05 44.1 18.3 117 231-357 27-162 (454)
318 2xzh_A Clathrin heavy chain 1; 95.9 0.87 3E-05 40.2 27.2 180 233-443 109-306 (365)
319 3das_A Putative oxidoreductase 95.7 1.1 3.7E-05 40.4 20.3 117 230-356 31-157 (347)
320 2xn4_A Kelch-like protein 2; s 95.4 1.3 4.4E-05 39.1 19.9 108 290-430 155-280 (302)
321 3s25_A Hypothetical 7-bladed b 95.2 1.5 5.1E-05 38.8 18.0 136 237-425 110-254 (302)
322 1zgk_A Kelch-like ECH-associat 95.0 1.8 6E-05 38.4 19.6 149 241-430 121-291 (308)
323 2uvk_A YJHT; unknown function, 94.9 2.1 7.1E-05 38.8 20.4 31 403-433 313-349 (357)
324 3ii7_A Kelch-like protein 7; p 94.8 2 6.8E-05 37.9 20.5 149 241-430 101-276 (306)
325 3s25_A Hypothetical 7-bladed b 94.6 2.2 7.6E-05 37.6 19.4 124 345-500 110-241 (302)
326 1xi4_A Clathrin heavy chain; a 94.5 5.7 0.0002 42.8 21.3 164 243-431 117-294 (1630)
327 1xi4_A Clathrin heavy chain; a 94.2 5.5 0.00019 43.0 20.4 170 231-431 151-336 (1630)
328 3das_A Putative oxidoreductase 93.7 3.7 0.00013 36.9 28.2 33 41-73 32-64 (347)
329 2vpj_A Kelch-like protein 12; 93.0 4.4 0.00015 35.5 21.2 150 241-430 62-235 (301)
330 4asc_A Kelch repeat and BTB do 93.0 4.6 0.00016 35.7 18.5 54 251-313 117-176 (315)
331 1bpo_A Protein (clathrin); cla 92.0 7.6 0.00026 35.9 31.0 175 243-443 117-305 (494)
332 3ii7_A Kelch-like protein 7; p 91.7 6.4 0.00022 34.5 21.3 149 241-430 55-229 (306)
333 3ei3_A DNA damage-binding prot 91.6 16 0.00056 39.0 31.0 74 230-310 553-635 (1158)
334 1zgk_A Kelch-like ECH-associat 90.7 8.2 0.00028 33.9 19.8 139 251-430 90-244 (308)
335 2be1_A Serine/threonine-protei 90.3 6.1 0.00021 35.4 13.4 22 53-74 11-32 (339)
336 1cru_A Protein (soluble quinop 89.4 14 0.00048 34.7 30.1 32 41-72 27-58 (454)
337 2woz_A Kelch repeat and BTB do 88.8 12 0.00041 33.0 20.4 23 290-313 158-186 (318)
338 2xn4_A Kelch-like protein 2; s 88.5 12 0.00041 32.6 21.4 149 241-430 61-233 (302)
339 3sbq_A Nitrous-oxide reductase 88.3 4.4 0.00015 38.7 11.2 89 340-441 324-432 (638)
340 4asc_A Kelch repeat and BTB do 87.9 14 0.00046 32.6 20.1 25 406-430 196-225 (315)
341 2zwa_A Leucine carboxyl methyl 85.4 32 0.0011 34.4 18.7 156 241-430 451-639 (695)
342 2zwa_A Leucine carboxyl methyl 83.8 38 0.0013 33.9 18.2 71 240-313 499-579 (695)
343 3ott_A Two-component system se 83.1 42 0.0014 33.9 33.7 174 232-430 325-506 (758)
344 3ott_A Two-component system se 82.8 43 0.0015 33.9 32.1 165 231-430 419-590 (758)
345 2wg3_C Hedgehog-interacting pr 82.4 33 0.0011 32.3 29.9 119 231-358 14-158 (463)
346 2wg3_C Hedgehog-interacting pr 78.9 28 0.00096 32.7 12.6 30 281-310 15-44 (463)
347 3q6k_A 43.2 kDa salivary prote 78.6 28 0.00097 31.6 12.0 114 359-508 123-250 (381)
348 3sbq_A Nitrous-oxide reductase 76.0 46 0.0016 32.0 12.7 78 233-312 325-409 (638)
349 2jra_A Protein RPA2121; domain 75.4 9.3 0.00032 24.1 5.3 25 33-57 42-66 (67)
350 3qhy_B Beta-lactamase inhibito 71.4 49 0.0017 28.5 23.3 148 232-430 103-250 (282)
351 4gq2_M Nucleoporin NUP120; bet 71.0 36 0.0012 35.6 12.1 34 398-431 238-271 (950)
352 2be1_A Serine/threonine-protei 68.3 27 0.00094 31.1 9.2 113 293-436 11-139 (339)
353 4gq2_M Nucleoporin NUP120; bet 64.8 1.4E+02 0.0048 31.2 15.6 34 280-314 236-269 (950)
354 4fhn_B Nucleoporin NUP120; pro 59.9 29 0.00097 37.2 9.0 32 400-431 242-273 (1139)
355 3zwu_A Alkaline phosphatase PH 57.2 42 0.0014 32.7 8.8 52 400-452 480-544 (592)
356 2uvk_A YJHT; unknown function, 57.2 1E+02 0.0036 27.3 16.6 12 302-313 168-179 (357)
357 3q6k_A 43.2 kDa salivary prote 53.8 1.3E+02 0.0044 27.3 22.0 157 252-426 124-306 (381)
358 3f7f_A Nucleoporin NUP120; nuc 50.7 68 0.0023 31.9 9.1 31 404-435 228-258 (729)
359 4a9v_A PHOX; hydrolase, beta-p 50.6 99 0.0034 29.9 9.9 54 398-452 478-544 (592)
360 2woz_A Kelch repeat and BTB do 46.0 1.5E+02 0.005 25.7 19.7 25 406-430 206-235 (318)
361 3zwu_A Alkaline phosphatase PH 36.8 1E+02 0.0035 30.0 7.9 18 118-137 531-548 (592)
362 4a9v_A PHOX; hydrolase, beta-p 34.4 1.7E+02 0.0059 28.3 8.8 61 339-414 476-549 (592)
363 3f7f_A Nucleoporin NUP120; nuc 32.7 34 0.0012 34.0 3.9 36 119-158 223-258 (729)
364 3qhy_B Beta-lactamase inhibito 29.8 2.6E+02 0.009 23.8 23.8 105 233-369 65-169 (282)
365 4fhn_B Nucleoporin NUP120; pro 27.5 37 0.0013 36.4 3.5 38 119-158 239-276 (1139)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-48 Score=375.86 Aligned_cols=435 Identities=54% Similarity=0.906 Sum_probs=315.7
Q ss_pred cceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceE
Q 043890 18 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRY 97 (509)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (509)
.+.+|++.|.|++. ...+.|.+.|++++|+|+|++||+|+.||.|+||++.+.+... ......+..
T Consensus 8 ~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~~~ 73 (447)
T 3dw8_B 8 NDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEYNV 73 (447)
T ss_dssp CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCEEE
T ss_pred cceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccceeE
Confidence 45789999999763 4456789999999999999999999999999999998766300 011223445
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCC--ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG--ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASS 175 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (509)
...+.+|.++|+++..+.+.+.|++++| +|++ .+|++++.|+.|++||+.++......... . ...|.+.
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~----~~~g~~~-- 144 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL-K----EEDGRYR-- 144 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC-C-------------
T ss_pred ecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCcceecc-c----Ccccccc--
Confidence 7788999999999999888899999999 8887 79999999999999999876532110000 0 0000000
Q ss_pred CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEE
Q 043890 176 SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINL 255 (509)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~i 255 (509)
.......+.+..+...+......+.+.+..+|...|.+++|+|++++|+++.|+.|++
T Consensus 145 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~i 202 (447)
T 3dw8_B 145 ----------------------DPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINL 202 (447)
T ss_dssp -----------------------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEE
T ss_pred ----------------------CcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEE
Confidence 0011111222222222222233445555678999999999999999999999999999
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT 335 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
||+++......++..++..+..|...|.+++|+|+++++|++++.||.|++||+++++.+......+..+..+.....+.
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (447)
T 3dw8_B 203 WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFS 282 (447)
T ss_dssp EETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHH
T ss_pred EECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccccccc
Confidence 99996565665555566678889999999999999768999999999999999999876544456777666555555566
Q ss_pred cccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 336 EIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
+|...|.+++|+|++++|++++++.|++||+++..+++..+..|......++..+..+++..++.++|+|++++|++|+.
T Consensus 283 ~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~ 362 (447)
T 3dw8_B 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY 362 (447)
T ss_dssp HHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS
T ss_pred ccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc
Confidence 67779999999999999999877999999999657888889988776666666666667666667999999999999999
Q ss_pred CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcE
Q 043890 416 SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENS 495 (509)
Q Consensus 416 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 495 (509)
||.|++||+.+++.+ .+++|..+.......+... ...+......++....+++..+|..++|||++++
T Consensus 363 dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 430 (447)
T 3dw8_B 363 NNFFRMFDRNTKRDI--TLEASRENNKPRTVLKPRK----------VCASGKRKKDEISVDSLDFNKKILHTAWHPKENI 430 (447)
T ss_dssp TTEEEEEETTTCCEE--EEECCSTTCCTTCBCCCCC----------EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSE
T ss_pred CCEEEEEEcCCCcce--eeeecccccccccccCCcc----------ccccCCcccccccccccccCCceeEEEECCCCCE
Confidence 999999999998776 5666665433211111100 0011111111111223456788999999999999
Q ss_pred EEEEecCceEEEeC
Q 043890 496 IACAAANSLYMYYA 509 (509)
Q Consensus 496 la~~~~~~i~v~~~ 509 (509)
||+++.+++++|++
T Consensus 431 la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 431 IAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSCEEEEEC
T ss_pred EEEEecceeeeecc
Confidence 99999999999984
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-44 Score=362.58 Aligned_cols=403 Identities=14% Similarity=0.169 Sum_probs=286.7
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. .....+.+|.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~---------------------~~~~~~~~~~--------- 103 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------ILKTTIPVFS--------- 103 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------CEEEEEECSS---------
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc---------------------eeeEeecccC---------
Confidence 4457999999999999999999999999999999975543 1135677887
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCC----CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTND----KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
+.|.+++| +|++++|++++.+ +.|++||.. +.... +..+......+.|+|++..
T Consensus 104 ---~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~---------------l~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 104 ---GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--TSNGN---------------LTGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp ---SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--CBCBC---------------CCCCSSCEEEEEECSSSSC
T ss_pred ---CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--CCcce---------------ecCCCCCceEEEECCCCCe
Confidence 78999999 9999999998875 478888843 22111 2234445567788888753
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
.+++++.++.+++|+.... ++... +.+|...|.+++|+|++++|+++ .|+.|++||+.+++....+..
T Consensus 162 ----~l~s~s~D~~v~lwd~~~~------~~~~~-l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 162 ----RIISGSDDNTVAIFEGPPF------KFKST-FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp ----EEEEEETTSCEEEEETTTB------EEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred ----EEEEEeCCCeEEEEECCCC------eEeee-eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc
Confidence 3467788999999997543 23334 38899999999999999999999 999999999988765432100
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc-----------------------
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE----------------------- 326 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------------- 326 (509)
......+|...|.+++|+|++ ++|++++.|++|++||+++++. ...+....
T Consensus 231 -~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 231 -DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV----EKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp -TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred -ccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCce----eeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 001122799999999999998 9999999999999999998763 22221110
Q ss_pred --------CCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEE-eecccccccc----------
Q 043890 327 --------APGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEYLRPKL---------- 386 (509)
Q Consensus 327 --------~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~---------- 386 (509)
.......+.+|...|.+++|+|+|++|++++ |+.|++||+.+ +.....+ ..|...+..+
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s 383 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFT 383 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEE
Confidence 0001223567889999999999999999986 59999999986 3332221 1111110000
Q ss_pred ---------cc------------------------c-----------------ccCC------CccceeeEEEcCCCCEE
Q 043890 387 ---------CD------------------------L-----------------YEND------SIFDKFECCLSGDGLRV 410 (509)
Q Consensus 387 ---------~~------------------------~-----------------~~~~------~~~~v~~~~~s~~~~~l 410 (509)
.+ + +... .-..+.+++|+|||++|
T Consensus 384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~l 463 (611)
T 1nr0_A 384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV 463 (611)
T ss_dssp EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEE
T ss_pred EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEE
Confidence 00 0 0000 00124589999999999
Q ss_pred EEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc---ceeeEeecCCCCCcccCCCccc-ccccceEE
Q 043890 411 ATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS---SITRVVRRGSDVPGVDTNGNSF-DFTTKLLH 486 (509)
Q Consensus 411 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 486 (509)
|+|+.|+.|++||+.++........+|...|.+++|+|++...... ...+.|+........ ..... .|...|++
T Consensus 464 asgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~--~~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 464 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNSWTFHTAKVAC 541 (611)
T ss_dssp EEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCCCCCCSSCEEE
T ss_pred EEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee--eeeeeeecccceeE
Confidence 9999999999999987654321237899999999999998864322 345555532100000 00011 26889999
Q ss_pred EEEcCCCcEEEEEec-CceEEEeC
Q 043890 487 LAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 487 ~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
++|+|++++||+++. +.++||+.
T Consensus 542 v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 542 VSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECCCCCEEEEEECCCcEEEEEC
Confidence 999999999999998 88999974
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-44 Score=344.12 Aligned_cols=286 Identities=16% Similarity=0.270 Sum_probs=248.2
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
...+.+|.++|++++|+|++++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~------- 150 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT------- 150 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS-------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC-------
Confidence 345568999999999999999999999999999999998877 57888998
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
+.|++++| +|++++|++|+.|++|++||+.+++....
T Consensus 151 -----~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------------------------------------ 187 (410)
T 1vyh_C 151 -----DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT------------------------------------ 187 (410)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC------------------------------------
T ss_pred -----CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEE------------------------------------
Confidence 78999999 99999999999999999999976542211
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+.+|...|.+++|+|++++|+++ .|+.|++||++++....
T Consensus 188 ---------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~------ 228 (410)
T 1vyh_C 188 ---------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK------ 228 (410)
T ss_dssp ---------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE------
T ss_pred ---------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE------
Confidence 36788999999999999999999 99999999999876543
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-- 349 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-- 349 (509)
.+.+|...|.++.++|++ .+|++++.|+.|++||+++++. ...+. +|...|.+++|+|+
T Consensus 229 --~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~----~~~~~------------~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 229 --TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKEC----KAELR------------EHRHVVECISWAPESS 289 (410)
T ss_dssp --EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEEEC------------CCSSCEEEEEECCSCG
T ss_pred --EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeEec------------CCCceEEEEEEcCccc
Confidence 467899999999999998 9999999999999999998763 23333 34478999999996
Q ss_pred ------------------CCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEE
Q 043890 350 ------------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV 410 (509)
Q Consensus 350 ------------------~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 410 (509)
+.+|++|+ |+.|++||+++ +.++..+.+|...+. +++|+|++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v~---------------~v~~~~~g~~l 353 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVR---------------GVLFHSGGKFI 353 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEE---------------EEEECSSSSCE
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcEE---------------EEEEcCCCCEE
Confidence 67899986 59999999997 678888888887654 89999999999
Q ss_pred EEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEc
Q 043890 411 ATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWH 490 (509)
Q Consensus 411 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 490 (509)
++|+.|+.|++||+.+++++. .+.+|. ..|++++|+
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~~-~~~~h~-------------------------------------------~~v~~l~~~ 389 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCMK-TLNAHE-------------------------------------------HFVTSLDFH 389 (410)
T ss_dssp EEEETTTEEEEECCTTSCCCE-EEECCS-------------------------------------------SCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCceEE-EEcCCC-------------------------------------------CcEEEEEEc
Confidence 999999999999999988887 776665 668999999
Q ss_pred CCCcEEEEEec-CceEEEeC
Q 043890 491 PTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 491 p~~~~la~~~~-~~i~v~~~ 509 (509)
|++.+||+|+. +.+++|+.
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC-
T ss_pred CCCCEEEEEeCCCcEEEEeC
Confidence 99999999987 89999973
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7e-44 Score=326.50 Aligned_cols=286 Identities=20% Similarity=0.253 Sum_probs=241.9
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++|+|++++||+|+.||.|+|||+.+++. ...+..|.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------------------~~~~~~~~---------- 55 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------------------VRSIQVTE---------- 55 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------------------eEEeeccC----------
Confidence 456999999999999999999999999999999988776 67788887
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.+++| ++++++|++|+.|+.|++||+.+++...
T Consensus 56 --~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~~~---------------------------------------- 91 (304)
T 2ynn_A 56 --TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVV---------------------------------------- 91 (304)
T ss_dssp --SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEE----------------------------------------
T ss_pred --CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcEEE----------------------------------------
Confidence 78999999 8999999999999999999998765321
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
. +.+|...|.+++|+|++++|+++ .|+.|++||++++..... .
T Consensus 92 ----------------------------~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-------~ 135 (304)
T 2ynn_A 92 ----------------------------D-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-------T 135 (304)
T ss_dssp ----------------------------E-EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-------E
T ss_pred ----------------------------E-EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-------h
Confidence 1 37899999999999999999999 999999999987654332 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec--CCCE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK--DGRH 352 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~ 352 (509)
+.+|...|.+++|+|+++.+|++|+.|+.|++||++.... ...+. .+|...+..+.|+| ++.+
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~-----------~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLT-----------TGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEE-----------CCCTTCEEEEEECCSTTCCE
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceec-----------cCCcCcEEEEEEEEcCCCCE
Confidence 6789999999999995448999999999999999987653 12222 12335788999987 7789
Q ss_pred EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|++++ |+.|++||+++ .+++..+.+|...+. .++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 201 l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v~---------------~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQT-KSCVATLEGHMSNVS---------------FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp EEEEETTSEEEEEETTT-TEEEEEEECCSSCEE---------------EEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEcCCCeEEEEeCCC-CccceeeCCCCCCEE---------------EEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 99986 59999999997 788889998887654 89999999999999999999999999998887
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc--EEEEEecCceEEEeC
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN--SIACAAANSLYMYYA 509 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~la~~~~~~i~v~~~ 509 (509)
.+..|. ..+.+++|+|++. ++|+|+++++.+|+.
T Consensus 265 -~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 265 -TLNVGL-------------------------------------------ERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp -EECCSS-------------------------------------------SSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred -eccCCC-------------------------------------------ccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 666654 5678888888874 688888899888863
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-44 Score=329.48 Aligned_cols=284 Identities=14% Similarity=0.251 Sum_probs=241.1
Q ss_pred eecccceEEEEECCC----CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 37 VQEVDIISAIEFDKT----GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~----~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.+|.+.|.+++|+|+ +.+||+|+.|+.|+||++...+. .....+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~------- 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ------- 80 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS-------
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC-------
Confidence 469999999999985 67999999999999999976543 1245678998
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++| ++++.++++++.|+.|++||+.+++....
T Consensus 81 -----~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~------------------------------------ 117 (321)
T 3ow8_A 81 -----LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKS------------------------------------ 117 (321)
T ss_dssp -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE------------------------------------
T ss_pred -----CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEE------------------------------------
Confidence 78999999 99999999999999999999987653221
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+..|...+.+++|+|++++|+++ .||.|++|++++++...
T Consensus 118 ---------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~------ 158 (321)
T 3ow8_A 118 ---------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY------ 158 (321)
T ss_dssp ---------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE------
T ss_pred ---------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE------
Confidence 24566678889999999999999 99999999999877543
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.+..|...|.+++|+|++ ++|++++.|+.|++||+++++. +..+.. |...|.+++|+|+++
T Consensus 159 --~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~----~~~~~~------------h~~~v~~l~~spd~~ 219 (321)
T 3ow8_A 159 --SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKL----LHTLEG------------HAMPIRSLTFSPDSQ 219 (321)
T ss_dssp --EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECC------------CSSCCCEEEECTTSC
T ss_pred --EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEcc------------cCCceeEEEEcCCCC
Confidence 345678889999999998 9999999999999999998864 344443 447899999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
+|++++ |+.|++||++. ......+.+|...+. +++|+|++++|++++.|+.|++||+.+++++
T Consensus 220 ~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~---------------~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQH-ANLAGTLSGHASWVL---------------NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp EEEEECTTSCEEEEETTT-CCEEEEECCCSSCEE---------------EEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEcCCCeEEEEECCC-cceeEEEcCCCCceE---------------EEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 999986 59999999996 677888888877654 8999999999999999999999999999988
Q ss_pred eeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 431 ATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
. .+.+|. ..|.+++|+|++++|++++. +.++||+.
T Consensus 284 ~-~~~~h~-------------------------------------------~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 284 H-TFFDHQ-------------------------------------------DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp E-EECCCS-------------------------------------------SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred E-EEcCCC-------------------------------------------CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 7 666664 66899999999999999888 78999984
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-42 Score=324.08 Aligned_cols=288 Identities=14% Similarity=0.225 Sum_probs=238.2
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|.+++|+|++++||+|+.||.|+|||+.+++. ...+..|.
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~--------- 97 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS--------- 97 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC---------
Confidence 4456999999999999999999999999999999988776 56777787
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|++++|++++.|+.|++|++.+....
T Consensus 98 ---~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~---------------------------------------- 132 (340)
T 1got_B 98 ---SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGN---------------------------------------- 132 (340)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBS----------------------------------------
T ss_pred ---ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCc----------------------------------------
Confidence 77999999 999999999999999999998754210
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
....+. +.+|...|.++.|++++. ++++ .|+.|++||+++++...
T Consensus 133 ------------------------~~~~~~-~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~-------- 178 (340)
T 1got_B 133 ------------------------VRVSRE-LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT-------- 178 (340)
T ss_dssp ------------------------CEEEEE-EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE--------
T ss_pred ------------------------ceeEEE-ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE--------
Confidence 001111 378999999999998876 6666 99999999999876442
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+.+|...|.+++|+|++ ++|++|+.|+.|++||++++.. ...+. +|...|.+++|+|++++|
T Consensus 179 ~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~----~~~~~------------~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 179 TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC----RQTFT------------GHESDINAICFFPNGNAF 241 (340)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEEEC------------CCSSCEEEEEECTTSSEE
T ss_pred EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCee----EEEEc------------CCcCCEEEEEEcCCCCEE
Confidence 467899999999999998 9999999999999999998763 34443 345789999999999999
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
++++ |+.|++||+++ .+.+..+..+.. ...|.+++|+|++++|++|+.|+.|++||+.+++.+.
T Consensus 242 ~s~s~d~~v~iwd~~~-~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~- 306 (340)
T 1got_B 242 ATGSDDATCRLFDLRA-DQELMTYSHDNI-------------ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG- 306 (340)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred EEEcCCCcEEEEECCC-CcEEEEEccCCc-------------ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee-
Confidence 9986 59999999996 455544432211 1123489999999999999999999999999888877
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.+.+|. ..|.+++|+|++.+||+|+. +.|+||+
T Consensus 307 ~~~~h~-------------------------------------------~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 VLAGHD-------------------------------------------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCS-------------------------------------------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeecCC-------------------------------------------CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 777665 66899999999999999997 7899996
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.9e-43 Score=349.31 Aligned_cols=377 Identities=17% Similarity=0.278 Sum_probs=280.3
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|++++|+|||++||+|+.|+.|+|||. +++. ...+.+|.
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~-----------------------~~~l~gh~--------- 57 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL-----------------------LQTLTGHS--------- 57 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCE-----------------------EEEEECCS---------
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCE-----------------------EEEEeCCC---------
Confidence 35679999999999999999999999999999995 3444 57889998
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCC---CcccCCCCcccCC-CC------------
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDP---SKAVGNGNVASSS-NN------------ 178 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~------------ 178 (509)
+.|++++| +|++++|++++.|++|+|||+.. +....+..+... +.+.+++..++.. .+
T Consensus 58 ---~~V~~l~f--spdg~~las~~~d~~i~vWd~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~ 131 (577)
T 2ymu_A 58 ---SSVWGVAF--SPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131 (577)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE
T ss_pred ---CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce
Confidence 88999999 99999999999999999999753 333333322222 2334444433211 11
Q ss_pred ----------ccCCccccCCCCC------------------------------------cceecCCCCCCCccccccccc
Q 043890 179 ----------VSPKPYLANGGSP------------------------------------SKEFSFPPGGIPSLRLPTVTS 212 (509)
Q Consensus 179 ----------~~~~~~~~~g~~~------------------------------------~~~~~~~~~~~~~i~~~~~~~ 212 (509)
.....+++++..+ ...++++++.++.+++|+...
T Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~ 211 (577)
T 2ymu_A 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred eeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC
Confidence 1112222332222 012234455677888888532
Q ss_pred cccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCC
Q 043890 213 NETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 291 (509)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 291 (509)
. ..+. +.+|...|.+++|+|++++|+++ .|+.|++||... +.. ..+.+|...|.+++|+|++
T Consensus 212 ~-------~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~--------~~~~~~~~~v~~v~~~~d~ 274 (577)
T 2ymu_A 212 Q-------LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLL--------QTLTGHSSSVNGVAFRPDG 274 (577)
T ss_dssp C-------EEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEE--------EEECCCSSCEEEEEECTTS
T ss_pred c-------EEEE-EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEE--------EEEecCCCCEEEEEEcCCC
Confidence 1 2223 37899999999999999999999 999999999653 322 2467799999999999998
Q ss_pred CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCC
Q 043890 292 CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDS 370 (509)
Q Consensus 292 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~ 370 (509)
+.|++++.|+.|++||..... ...+. +|...|.+++|+|++++|++++ |+.|++||+..
T Consensus 275 -~~l~~~~~d~~i~~w~~~~~~-----~~~~~------------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-- 334 (577)
T 2ymu_A 275 -QTIASASDDKTVKLWNRNGQL-----LQTLT------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 334 (577)
T ss_dssp -SEEEEEETTSCEEEEETTSCE-----EEEEC------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--
T ss_pred -CEEEEEeCCCEEEEEeCCCcE-----EEEEe------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--
Confidence 999999999999999975432 33333 3457899999999999999986 59999999874
Q ss_pred CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCC
Q 043890 371 GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 450 (509)
..+..+..|...+. +++|+|++++|++++.|+.|++|+.. ++.+. .+.+|..++++++|+|++
T Consensus 335 ~~~~~~~~~~~~v~---------------~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~-~~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 335 QHLQTLTGHSSSVW---------------GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-TLTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp CEEEEECCCSSCEE---------------EEEECTTSSEEEEEETTSEEEEEETT-CCEEE-EEECCSSCEEEEEECTTS
T ss_pred CeeEEEeCCCCCEE---------------EEEECCCCCEEEEEeCCCEEEEEcCC-CCEEE-EecCCCCCeEEEEECCCC
Confidence 56667777765543 89999999999999999999999964 67776 899999999999999998
Q ss_pred CCCccc---ceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 451 PSRSLS---SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 451 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.....+ ...+.|+..... ... ...|...|.+++|+|++++|++++. +.+++|+.
T Consensus 398 ~~l~~~~~d~~v~~~~~~~~~-~~~----~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNRNGQL-LQT----LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp SCEEEEETTSEEEEECTTCCE-EEE----EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEEeCCCEEEEEeCCCCE-EEE----ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 874332 334444422111 011 1145788999999999999999988 78999973
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-42 Score=321.68 Aligned_cols=294 Identities=14% Similarity=0.213 Sum_probs=240.1
Q ss_pred cCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
...+.+|.+.|++++|+|++++||+|+.||.|+|||..+.+. ...+..|.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~------- 106 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC------- 106 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS-------
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC-------
Confidence 445678999999999999999999999999999999887765 55666676
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++| +|++.+|++++.|+.+++|++.........
T Consensus 107 -----~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~----------------------------------- 144 (354)
T 2pbi_B 107 -----TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMA----------------------------------- 144 (354)
T ss_dssp -----SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSG-----------------------------------
T ss_pred -----CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEecccccccc-----------------------------------
Confidence 67999999 999999999999999999998654211000
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
..... +.+|...|.+++|+|++..|+++ .|+.|++||+++++...
T Consensus 145 ---------------------------~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~------ 190 (354)
T 2pbi_B 145 ---------------------------AKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ------ 190 (354)
T ss_dssp ---------------------------GGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE------
T ss_pred ---------------------------cccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE------
Confidence 00011 36789999999999999999999 99999999999876543
Q ss_pred CCccCCCccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 272 PANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.+.+|...|.+++|+|+. .++|++|+.|+.|++||+++++. +..+.. |...|.+++|+|++
T Consensus 191 --~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~----~~~~~~------------h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 191 --SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC----VQAFET------------HESDVNSVRYYPSG 252 (354)
T ss_dssp --EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE----EEEECC------------CSSCEEEEEECTTS
T ss_pred --EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE----EEEecC------------CCCCeEEEEEeCCC
Confidence 467899999999998852 27999999999999999998763 344443 44789999999999
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
.+|++++ |+.|++||++. .+.+..+..+.. ...+.+++|+|++++|++|+.|+.|++||+.+++.
T Consensus 253 ~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp SEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 9999986 59999999996 444444443221 11234899999999999999999999999999988
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+. .+.+|. ..|++++|+|++++||+++. +.++||+
T Consensus 319 ~~-~l~~h~-------------------------------------------~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 VS-ILFGHE-------------------------------------------NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EE-EECCCS-------------------------------------------SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EE-EEECCC-------------------------------------------CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 76 666665 67899999999999999998 7899995
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.3e-43 Score=324.41 Aligned_cols=295 Identities=14% Similarity=0.158 Sum_probs=223.0
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|...|.+++|+|||++|++++ |+++++||....... .. ...+....... ..+++.
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~-~~-----------~~~~~~~~~~~------------~~~~~~ 83 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK-DP-----------CAAPNEGFCSA------------GVQTEA 83 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES-SG-----------GGTTCGGGCSE------------EEEESS
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec-cc-----------cccCCcceeee------------eeccCC
Confidence 678899999999999999888 678888874321100 00 00000000011 112236
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.+++| ++++ .|++|+.||+|+|||+.+++.....
T Consensus 84 ~v~~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~----------------------------------------- 119 (344)
T 4gqb_B 84 GVADLTW--VGER-GILVASDSGAVELWELDENETLIVS----------------------------------------- 119 (344)
T ss_dssp CEEEEEE--ETTT-EEEEEETTSEEEEEEECTTSSCEEE-----------------------------------------
T ss_pred CEEEEEE--eCCC-eEEEEECCCEEEEEeccCCCceeEe-----------------------------------------
Confidence 7999999 8875 7889999999999999877533221
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
+....+|...|++++|+|++++|++| .|+.|++||+++++... .+.+
T Consensus 120 ------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~--------~~~~ 167 (344)
T 4gqb_B 120 ------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS--------SYRA 167 (344)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------EECC
T ss_pred ------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE--------EEcC
Confidence 11136899999999999999999999 99999999999876543 5678
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CCEEEEe
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GRHILSR 356 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~ 356 (509)
|...|.+++|+|++..+|++++.|+.|++||+++++. ...+... .|...+.+++|+|+ +++|++|
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~----------~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP----ASQIGCS----------APGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC----EEECC--------------CCCEEEEEECSSCTTEEEEE
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccce----eeeeecc----------eeeccceeeeecCCCCcceEEe
Confidence 9999999999999867899999999999999998864 2333221 12356899999995 5688887
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
+ |+.|+|||+++ .+++..+.+|...+. +++|+|++ ++|++|+.|++|+|||+.+++++ .+
T Consensus 234 ~~dg~v~~wd~~~-~~~~~~~~~h~~~v~---------------~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~--~~ 295 (344)
T 4gqb_B 234 DENGTVSLVDTKS-TSCVLSSAVHSQCVT---------------GLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--RS 295 (344)
T ss_dssp ETTSEEEEEESCC---CCEEEECCSSCEE---------------EEEECSSSSCCEEEEETTSCEEEECTTCCEEE--EE
T ss_pred ccCCcEEEEECCC-CcEEEEEcCCCCCEE---------------EEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--EE
Confidence 6 59999999997 788899999887655 99999998 57999999999999999988755 44
Q ss_pred ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc-EEEEEec-CceEEEeC
Q 043890 435 EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN-SIACAAA-NSLYMYYA 509 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~-~~i~v~~~ 509 (509)
.+|. ..|++++|+|++. +|++++. +.|++|+.
T Consensus 296 ~~H~-------------------------------------------~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 296 QAHR-------------------------------------------DFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CCCS-------------------------------------------SCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred cCCC-------------------------------------------CCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 5554 6688899999885 5667765 88999973
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.2e-42 Score=347.27 Aligned_cols=392 Identities=14% Similarity=0.182 Sum_probs=284.3
Q ss_pred cceecccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+.+|.+.|.+++|+|++. +||+|+.|+.|++||....+. ...+.+|.
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-----------------------~~~l~~H~-------- 190 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----------------------KSTFGEHT-------- 190 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----------------------EEEECCCS--------
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-----------------------eeeecccc--------
Confidence 4567999999999999986 599999999999999876554 67788998
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|++++| +|++++|++++.|++|++||+.+++....+... .-....+......++|+|+|+.+
T Consensus 191 ----~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~--------~~~~~~h~~~V~~v~~spdg~~l-- 254 (611)
T 1nr0_A 191 ----KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD--------SLKNVAHSGSVFGLTWSPDGTKI-- 254 (611)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCT--------TSSSCSSSSCEEEEEECTTSSEE--
T ss_pred ----CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeeccc--------cccccccCCCEEEEEECCCCCEE--
Confidence 78999999 999999999999999999999887654332100 00011344455667888887643
Q ss_pred eecCCCCCCCcccccccccccccee-------------------------------------eeeeeeeecccccCeEEE
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLV-------------------------------------ARCRRVYAHAHDYHINSI 236 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~i 236 (509)
++++.++.|++||+.+...... ..+.+. +.+|...|.++
T Consensus 255 ---~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~-~~gh~~~v~~l 330 (611)
T 1nr0_A 255 ---ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV-RYGHNKAITAL 330 (611)
T ss_dssp ---EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE-ECCCSSCEEEE
T ss_pred ---EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE-EcCCCCCEEEE
Confidence 5567778888888765432110 011222 36899999999
Q ss_pred EECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCccc
Q 043890 237 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALC 315 (509)
Q Consensus 237 ~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 315 (509)
+|+|++++|+++ .|+.|++||+.++..... ....|...|.+++|++++ .+++++.|+.+++|++......
T Consensus 331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~-------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 331 SSSADGKTLFSADAEGHINSWDISTGISNRV-------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEC-------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSC
T ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeee-------cccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCcccc
Confidence 999999999999 999999999998664321 225689999999999875 7889999999999998765421
Q ss_pred CCc---------eeeeccccC----------------CCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCC
Q 043890 316 DSH---------AILFEEQEA----------------PGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMD 369 (509)
Q Consensus 316 ~~~---------~~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~ 369 (509)
... ...+..... ......+ .|...+.+++|+|||++|++|+ |+.|++||+..
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~- 479 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG- 479 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-
Confidence 100 000000000 0000011 2456789999999999999986 59999999985
Q ss_pred CCc--eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC-Cceeee-eeccCCCceeEEE
Q 043890 370 SGP--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP-GSTEAT-TLEASKNPMRRQV 445 (509)
Q Consensus 370 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~-~~~~~~~~v~~~~ 445 (509)
... ... ..|...+. +++|+|||++|++++.|++|++|++.+ ++.+.. .+.+|...|.+++
T Consensus 480 ~~~~~~~~-~~h~~~v~---------------~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 480 ASVSEVKT-IVHPAEIT---------------SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543 (611)
T ss_dssp TEEEEEEE-EECSSCEE---------------EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred Cceeeeec-cCCCCceE---------------EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE
Confidence 322 122 45655443 999999999999999999999999987 665542 2345999999999
Q ss_pred EcCCCCCCcc---cceeeEeecCCCC-Cc-ccCCCccccc-ccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 446 QTPSRPSRSL---SSITRVVRRGSDV-PG-VDTNGNSFDF-TTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 446 ~s~~~~~~~~---~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
|+|++..... ++.++.|+..... .. ..+. .| ...|.+++|+|+++ |++++. +.|++|++
T Consensus 544 fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~----~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG----AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT----SSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ECCCCCEEEEEECCCcEEEEECCCcccccchhhc----cCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 9999886432 3557777633211 11 1122 35 67899999999999 887776 89999984
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4e-42 Score=344.61 Aligned_cols=356 Identities=17% Similarity=0.294 Sum_probs=281.5
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|...|.+++|+|++++|++++.|+.|++||... +. ...+.+|.
T Consensus 216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~-----------------------~~~~~~~~--------- 262 (577)
T 2ymu_A 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL-----------------------LQTLTGHS--------- 262 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CE-----------------------EEEECCCS---------
T ss_pred EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE-----------------------EEEEecCC---------
Confidence 3456999999999999999999999999999999643 22 46778887
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|++++| +|++++|++++.|+.|++|+..... ..... .+......++|+|+++.+
T Consensus 263 ---~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~---------------~h~~~v~~~~~~~~~~~l--- 318 (577)
T 2ymu_A 263 ---SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQL-LQTLT---------------GHSSSVWGVAFSPDGQTI--- 318 (577)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEEC---------------CCSSCEEEEEECTTSSEE---
T ss_pred ---CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcE-EEEEe---------------cCCCCeEEEEECCCCCEE---
Confidence 78999999 9999999999999999999975432 21111 123334556778877543
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
++.+.++.+++|+...... .. +.+|...+.+++|+|++++|+++ .|+.|++||.. ++.. .
T Consensus 319 --~t~~~d~~i~~w~~~~~~~-------~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~--------~ 379 (577)
T 2ymu_A 319 --ASASDDKTVKLWNRNGQHL-------QT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL--------Q 379 (577)
T ss_dssp --EEEETTSCEEEEETTSCEE-------EE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE--------E
T ss_pred --EEEeCCCeEEEEeCCCCee-------EE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE--------E
Confidence 4566788899999754332 22 37889999999999999999999 99999999964 3322 2
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+..|...|.+++|+|++ ++|++++.|+.|++||..... +..+. +|...|.+++|+||+++|
T Consensus 380 ~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~~~-----~~~~~------------~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 380 TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQL-----LQTLT------------GHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp EEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTCCE-----EEEEE------------CCSSCEEEEEECTTSSEE
T ss_pred EecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCE-----EEEec------------CCCCCeEEEEECCCCCEE
Confidence 456789999999999998 999999999999999965332 34443 345789999999999999
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
++++ |+.|++||.. .+.+..+..|...+. +++|+|++++|++++.|+.|++|+. +++++.
T Consensus 442 ~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~---------------~~~~spd~~~las~~~d~~i~iw~~-~~~~~~- 502 (577)
T 2ymu_A 442 ASASDDKTVKLWNRN--GQLLQTLTGHSSSVR---------------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ- 502 (577)
T ss_dssp EEEETTSEEEEEETT--SCEEEEEECCSSCEE---------------EEEECTTSCEEEEEETTSEEEEEET-TSCEEE-
T ss_pred EEEcCCCEEEEEECC--CCEEEEEcCCCCCEE---------------EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE-
Confidence 9986 5999999975 477888888876654 8999999999999999999999996 577787
Q ss_pred eeccCCCceeEEEEcCCCCCCccc---ceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLS---SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
.+.+|..+|++++|+|++.....+ +..+.|+.... ....+. .|...|++++|+||+++|++++. +.|++|+
T Consensus 503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~-~~~~~~----~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLT----GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC-EEEEEE----CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCC-EEEEEc----CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999998874332 34555542111 111112 46889999999999999999887 7899996
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-42 Score=323.89 Aligned_cols=290 Identities=16% Similarity=0.222 Sum_probs=224.5
Q ss_pred ecccceEEEEECCCCCeEEeecC------CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 38 QEVDIISAIEFDKTGDHLATGDR------GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
.|.+.|.+|+|+|||++||+|+. |+.|++|+..++... ..+.....+|.
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------------------~~~~~~~~~~~------ 94 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------------------ESLCTAGVQTE------ 94 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------------------GGGCSEEEECS------
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------------------eeEecccCCCC------
Confidence 49999999999999999999997 778999988766540 01122334555
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..|++++| +|+++ +++++.||+|++||+.+++......
T Consensus 95 ------~~V~~~~~--s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~--------------------------------- 132 (357)
T 4g56_B 95 ------AGVTDVAW--VSEKG-ILVASDSGAVELWEILEKESLLVNK--------------------------------- 132 (357)
T ss_dssp ------SCEEEEEE--ETTTE-EEEEETTSCEEEC--------CCCC---------------------------------
T ss_pred ------CCEEEEEE--cCCCC-EEEEECCCEEEEeeccccceeEEEe---------------------------------
Confidence 77999999 88874 6678889999999998775332211
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
....+|...|++++|+|++++|+++ .|+.|++||+++++...
T Consensus 133 --------------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~----- 175 (357)
T 4g56_B 133 --------------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK----- 175 (357)
T ss_dssp --------------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE-----
T ss_pred --------------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-----
Confidence 0125789999999999999999999 99999999999876443
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.+..|...|++++|+|++..++++++.|+.|++||+++++.. ..+. ...|...+.+++|+|++
T Consensus 176 ---~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~----------~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 176 ---SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRID----------FCASDTIPTSVTWHPEK 238 (357)
T ss_dssp ---EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCC----------CTTCCSCEEEEEECTTS
T ss_pred ---EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeee----------eccccccccchhhhhcc
Confidence 467899999999999998668999999999999999987642 2221 12234679999999974
Q ss_pred -CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q 043890 351 -RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 351 -~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~ 427 (509)
.+|++|+ |+.|++||+++ .+++..+..|...+. +++|+|++ ++||+|+.|++|+|||++++
T Consensus 239 ~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v~---------------~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQNIT---------------GLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp TTEEEEEESSSCEEEEESSC-GGGCEEECCCSSCEE---------------EEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred cceEEEeecccceeEEECCC-CcEeEEEeccceeEE---------------EEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 6788875 59999999997 678888888877654 89999987 57999999999999999998
Q ss_pred ceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC-CCcEEEEEec-CceE
Q 043890 428 STEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP-TENSIACAAA-NSLY 505 (509)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~-~~i~ 505 (509)
+.+. .+ +| ...|++++|+| ++.+||+++. +.|+
T Consensus 303 ~~~~-~~-~H-------------------------------------------~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 303 EVFR-DL-SH-------------------------------------------RDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp EEEE-EC-CC-------------------------------------------SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred cEeE-EC-CC-------------------------------------------CCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 7765 22 34 46789999998 7889998887 8999
Q ss_pred EEeC
Q 043890 506 MYYA 509 (509)
Q Consensus 506 v~~~ 509 (509)
+|+.
T Consensus 338 iW~~ 341 (357)
T 4g56_B 338 HHHL 341 (357)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9974
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-41 Score=309.26 Aligned_cols=286 Identities=21% Similarity=0.355 Sum_probs=239.6
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|++++|+|++++||+|+.||.|++|+..+++. ...+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-----------------------~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------------------EKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-----------------------chhhccCC----------
Confidence 346999999999999999999999999999999987766 67778888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.+++| +|++++|++++.|+.|++||+.+++...
T Consensus 66 --~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~---------------------------------------- 101 (312)
T 4ery_A 66 --LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLK---------------------------------------- 101 (312)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE----------------------------------------
T ss_pred --CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEE----------------------------------------
Confidence 78999999 9999999999999999999998764221
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
. +.+|...|.+++|+|++++|+++ .|+.|++||+++++... .
T Consensus 102 ----------------------------~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~ 144 (312)
T 4ery_A 102 ----------------------------T-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--------T 144 (312)
T ss_dssp ----------------------------E-EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE--------E
T ss_pred ----------------------------E-EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE--------E
Confidence 1 36788899999999999999999 99999999999876543 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+..|...|.+++|+|++ ++|++++.|+.|++||+++++. +..+.. .+...+..++|+|++++|+
T Consensus 145 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~l~ 208 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC----LKTLID-----------DDNPPVSFVKFSPNGKYIL 208 (312)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEEECC-----------SSCCCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----eeEEec-----------cCCCceEEEEECCCCCEEE
Confidence 56788999999999998 8999999999999999998763 233221 1235799999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEE-cCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCL-SGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
+++ |+.|++||+++ .+.+..+..|......+ ...+ .+++.+|++|+.||.|++||+.+++.+.
T Consensus 209 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~- 273 (312)
T 4ery_A 209 AATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCI-------------FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ- 273 (312)
T ss_dssp EEETTTEEEEEETTT-TEEEEEECSSCCSSSCC-------------CEEEECSSSCEEEECCTTSCEEEEETTTCCEEE-
T ss_pred EEcCCCeEEEEECCC-CcEEEEEEecCCceEEE-------------EEEEEeCCCcEEEEECCCCEEEEEECCCchhhh-
Confidence 986 59999999996 67777777765543211 2334 4678999999999999999999998887
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe---cCceEEEeC
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA---ANSLYMYYA 509 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~---~~~i~v~~~ 509 (509)
.+.+|. ..|.+++|+|++++|++++ ++.+++|..
T Consensus 274 ~~~~h~-------------------------------------------~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 KLQGHT-------------------------------------------DVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECCCS-------------------------------------------SCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhccC-------------------------------------------CcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 777665 6689999999999999986 478999974
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-41 Score=320.44 Aligned_cols=309 Identities=13% Similarity=0.173 Sum_probs=240.0
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|++++|+|++++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~--------- 108 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC--------- 108 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC---------
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC---------
Confidence 3457999999999999999999999999999999988776 67788888
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|++++|++++.|+.+++|++.+...... .
T Consensus 109 ---~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~--------------~----------------------- 146 (380)
T 3iz6_a 109 ---PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG--------------N----------------------- 146 (380)
T ss_dssp ---TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC--------------S-----------------------
T ss_pred ---CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC--------------C-----------------------
Confidence 77999999 99999999999999999999975421000 0
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
.. ..+ .+.+|...+.++.|.|+ +..|+++ .|+.|++||+++++....+ ..
T Consensus 147 ----------~~--------------~~~-~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~---~~ 198 (380)
T 3iz6_a 147 ----------MP--------------VSR-VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF---GS 198 (380)
T ss_dssp ----------ST--------------TCC-BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE---CC
T ss_pred ----------cc--------------cee-eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe---ec
Confidence 00 000 13789999999999997 4568888 9999999999987654322 11
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
....+|...|.+++|++.+.++|++|+.|+.|++||++..... +..+. +|...|.+++|+|++++
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~~~~~------------~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA---VRTYH------------GHEGDINSVKFFPDGQR 263 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---CEEEC------------CCSSCCCEEEECTTSSE
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---eEEEC------------CcCCCeEEEEEecCCCe
Confidence 1236789999999998843489999999999999999854321 33333 45589999999999999
Q ss_pred EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|++|+ |+.|++||+++ +..+..+..+..... .....|.+++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus 264 l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp EEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence 99986 59999999997 666666655432110 011113489999999999999999999999999887765
Q ss_pred eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 432 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.+.... -.|...|++++|+|++.+|++|+. +.++||+.
T Consensus 335 -~~~~~~---------------------------------------~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 335 -NLGTLQ---------------------------------------NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp -EECCSC---------------------------------------SSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred -EEeccc---------------------------------------CCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 332100 013577999999999999999997 89999973
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.3e-41 Score=307.82 Aligned_cols=295 Identities=16% Similarity=0.243 Sum_probs=234.5
Q ss_pred cceecccceEEEEECCCC-CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDIISAIEFDKTG-DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~-~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+.+|.+.|.+++|+|++ ++|++|+.|+.|++|++..... ........+.+|.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~------------------~~~~~~~~~~~h~-------- 65 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ------------------KFGVPVRSFKGHS-------- 65 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT------------------EEEEEEEEEECCS--------
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc------------------cccccceEEeCCc--------
Confidence 345699999999999965 8999999999999999975432 0012256788998
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.+++| ++++++|++++.|++|++||+.+++...
T Consensus 66 ----~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~-------------------------------------- 101 (319)
T 3frx_A 66 ----HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQ-------------------------------------- 101 (319)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE--------------------------------------
T ss_pred ----ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeE--------------------------------------
Confidence 78999999 9999999999999999999998765321
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
. +.+|...|.+++|+|++.+|+++ .|+.|++||++. +..
T Consensus 102 ------------------------------~-~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~-------- 141 (319)
T 3frx_A 102 ------------------------------R-FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCL-------- 141 (319)
T ss_dssp ------------------------------E-EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEE--------
T ss_pred ------------------------------E-EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeE--------
Confidence 1 37899999999999999999999 999999999974 322
Q ss_pred CccCCCccceEEEEEeCCC-----CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 273 ANMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
..+.+|...|.++.|.|.. ..+|++++.|+.|++||+++.+. ...+ .+|...|.+++|+
T Consensus 142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~------------~~h~~~v~~~~~s 205 (319)
T 3frx_A 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI----EADF------------IGHNSNINTLTAS 205 (319)
T ss_dssp EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE----EEEE------------CCCCSCEEEEEEC
T ss_pred EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh----heee------------cCCCCcEEEEEEc
Confidence 2467899999999999853 14899999999999999988753 2333 3455899999999
Q ss_pred cCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 348 KDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 348 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
|++++|++++ |+.|+|||+.+ .+.+..+..+. . |.+++|+|++.+|++++.+ .+++|+++.
T Consensus 206 p~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~-~---------------v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 206 PDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQD-E---------------VFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp TTSSEEEEEETTCEEEEEETTT-TEEEEEEECCS-C---------------EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCC-c---------------EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 9999999986 59999999996 66666666442 2 2389999999999987755 599999987
Q ss_pred CceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceE
Q 043890 427 GSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLY 505 (509)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~ 505 (509)
+..+. .+..+.. +....+...+.+++|+|++++|++|+. +.|+
T Consensus 268 ~~~~~-~~~~~~~-----------------------------------~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 268 QYLVD-DLRPEFA-----------------------------------GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp EEEEE-EECCCCT-----------------------------------TCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Ceeee-ccCcccc-----------------------------------ccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 76554 3332210 001123467899999999999999988 7899
Q ss_pred EEeC
Q 043890 506 MYYA 509 (509)
Q Consensus 506 v~~~ 509 (509)
||++
T Consensus 312 vWd~ 315 (319)
T 3frx_A 312 VWQV 315 (319)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=309.47 Aligned_cols=302 Identities=15% Similarity=0.290 Sum_probs=228.1
Q ss_pred eeccc-ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 37 VQEVD-IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~-~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.+|.+ .|.+++|+|+|++||+|+.|+.|+|||+.+... ........+|.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~--------------------~~~~~~~~~h~---------- 61 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW--------------------ICKSVLSEGHQ---------- 61 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE--------------------EEEEEECSSCS----------
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc--------------------eeeeeeccccC----------
Confidence 35877 999999999999999999999999999987643 00012236777
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|++++| +|++++|++++.|+.|++|++..+...
T Consensus 62 --~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~----------------------------------------- 96 (345)
T 3fm0_A 62 --RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFE----------------------------------------- 96 (345)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EE-----------------------------------------
T ss_pred --CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeE-----------------------------------------
Confidence 78999999 999999999999999999998755311
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+... +.+|...|.+++|+|++++|+++ .|+.|++||+++......+ ..
T Consensus 97 -------------------------~~~~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----~~ 145 (345)
T 3fm0_A 97 -------------------------CVTT-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV-----SV 145 (345)
T ss_dssp -------------------------EEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE-----EE
T ss_pred -------------------------EEEE-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE-----EE
Confidence 1112 37899999999999999999999 9999999999876532211 24
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+..|...|.+++|+|++ .+|++++.|+.|++||++.++.. .... +.+|...|.+++|+|+|++|+
T Consensus 146 ~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~--~~~~------------~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV--CCAT------------LEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp ECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE--EEEE------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE--EEEE------------ecCCCCceEEEEECCCCCEEE
Confidence 57799999999999998 99999999999999999876421 0122 334568999999999999999
Q ss_pred Eec-CCeEEEEECCCCCCc--------------eEEEee-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCc
Q 043890 355 SRD-YMTLKLWDINMDSGP--------------VATFQV-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL 418 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 418 (509)
+++ |+.|+|||....... +..+.+ |.. .|++++|+|++..|++++.|+.
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR---------------TIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS---------------CEEEEEECTTTCCEEEEETTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC---------------cEEEEEEecCCCEEEEEeCCCe
Confidence 986 599999997532211 111111 221 2348999999999999999999
Q ss_pred EEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCC-cEEE
Q 043890 419 FRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTE-NSIA 497 (509)
Q Consensus 419 i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la 497 (509)
|++|+...+.... .+...+... .. ..|...|++++|+|++ .+||
T Consensus 276 i~vw~~~~~~~~~-------~~~~~~~~~------------------------~~----~~h~~~V~~v~~~p~~~~~la 320 (345)
T 3fm0_A 276 IRVFQEDPNSDPQ-------QPTFSLTAH------------------------LH----QAHSQDVNCVAWNPKEPGLLA 320 (345)
T ss_dssp EEEEEECTTSCTT-------SCCEEEEEE------------------------ET----TSSSSCEEEEEECSSSTTEEE
T ss_pred EEEEEeCCCCCcc-------eeeEEEEee------------------------ec----ccccCcEeEeEEeCCCceEEE
Confidence 9999987553211 000000000 00 1245789999999998 4899
Q ss_pred EEec-CceEEEeC
Q 043890 498 CAAA-NSLYMYYA 509 (509)
Q Consensus 498 ~~~~-~~i~v~~~ 509 (509)
+++. +.+++|+.
T Consensus 321 S~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 321 SCSDDGEVAFWKY 333 (345)
T ss_dssp EEETTSCEEEEEE
T ss_pred EcCCCCcEEEEEe
Confidence 8887 89999973
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-40 Score=311.29 Aligned_cols=305 Identities=16% Similarity=0.311 Sum_probs=231.6
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchh------h
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFD------Y 110 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------~ 110 (509)
.+|.+.|.+++|+|+|++||+|+ ++.++||++.+++. ...+..|..... .
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-----------------------~~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-----------------------VARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-----------------------EEEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-----------------------EEEecCccccccccccccc
Confidence 36999999999999999999987 67999999988765 233332221000 0
Q ss_pred ccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 111 LKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 111 ~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
.........|++++| +|++++|++++.|+.|++||+.+++...
T Consensus 117 ~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------- 159 (393)
T 1erj_A 117 SSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVM----------------------------------- 159 (393)
T ss_dssp ----CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE-----------------------------------
T ss_pred cccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEE-----------------------------------
Confidence 000011135899999 9999999999999999999998764221
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
. +.+|...|.+++|+|++++|+++ .|+.|++||+++++....+
T Consensus 160 ---------------------------------~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-- 203 (393)
T 1erj_A 160 ---------------------------------I-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-- 203 (393)
T ss_dssp ---------------------------------E-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred ---------------------------------E-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE--
Confidence 1 37899999999999999999999 9999999999987644321
Q ss_pred ccCCccCCCccceEEEEEeC-CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 270 VKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
.+...+.+++|+| ++ ++|++++.|+.|++||++++.. +..+.... ....+|...|.+++|+|
T Consensus 204 -------~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~----~~~~~~~~-----~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 204 -------SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFL----VERLDSEN-----ESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp -------ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCE----EEEEC-----------CCCSSCEEEEEECT
T ss_pred -------EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcE----EEeecccc-----cCCCCCCCCEEEEEECC
Confidence 2556799999999 66 9999999999999999998764 23332111 12345778999999999
Q ss_pred CCCEEEEec-CCeEEEEECCCCC-----------CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 349 DGRHILSRD-YMTLKLWDINMDS-----------GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 349 ~~~~l~s~~-~~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
++++|++++ |+.|++||++... .+...+.+|...+ ++++|+|++++|++|+.|
T Consensus 267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKD 331 (393)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCC
Confidence 999999986 6999999998521 1233445555443 389999999999999999
Q ss_pred CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEE
Q 043890 417 NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
+.|++||+.+++.+. .+.+|...|.++++++.. .|+|++++|
T Consensus 332 ~~v~iwd~~~~~~~~-~l~~h~~~v~~v~~~~~~-------------------------------------~~~p~~~~l 373 (393)
T 1erj_A 332 RGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGS-------------------------------------SLGPEYNVF 373 (393)
T ss_dssp SEEEEEETTTCCEEE-EEECCSSCEEEEEECSSC-------------------------------------TTCTTCEEE
T ss_pred CeEEEEECCCCeEEE-EECCCCCCEEEEEecCCc-------------------------------------CcCCCCCEE
Confidence 999999999999887 899998777777665531 245688999
Q ss_pred EEEec-CceEEEe
Q 043890 497 ACAAA-NSLYMYY 508 (509)
Q Consensus 497 a~~~~-~~i~v~~ 508 (509)
|+|+. +.++||+
T Consensus 374 ~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 374 ATGSGDCKARIWK 386 (393)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEECCCCcEEECc
Confidence 99987 7899997
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-38 Score=297.55 Aligned_cols=303 Identities=16% Similarity=0.252 Sum_probs=227.5
Q ss_pred cceecccceEEEEE-----CC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcch
Q 043890 35 EEVQEVDIISAIEF-----DK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEF 108 (509)
Q Consensus 35 ~~~~h~~~I~~v~~-----s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 108 (509)
.+.+|.+.|++++| ++ ++++||+|+.|+.|+|||+...+... ........+.+|.
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~--- 76 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN--- 76 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS---
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC---
Confidence 34569999999999 76 89999999999999999997654300 0012246778888
Q ss_pred hhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCC
Q 043890 109 DYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANG 188 (509)
Q Consensus 109 ~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 188 (509)
..|++++| +|++.+|++++.|++|++||+.+++...
T Consensus 77 ---------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~--------------------------------- 112 (343)
T 2xzm_R 77 ---------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYK--------------------------------- 112 (343)
T ss_dssp ---------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEE---------------------------------
T ss_pred ---------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEE---------------------------------
Confidence 78999999 9999999999999999999998764221
Q ss_pred CCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeE
Q 043890 189 GSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~ 267 (509)
. +.+|...|.+++|+|++++|+++ .|+.|++||+... .....
T Consensus 113 -----------------------------------~-~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 155 (343)
T 2xzm_R 113 -----------------------------------R-FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSS 155 (343)
T ss_dssp -----------------------------------E-EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEEC
T ss_pred -----------------------------------E-EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeee
Confidence 1 37899999999999999999999 9999999999843 22211
Q ss_pred eeccCCccCCCccceEEEEEeCCCC---------cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHC---------NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
.....|...|.+++|+|++. .+|++++.|+.|++||.+... ...+. +|.
T Consensus 156 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~------------~h~ 213 (343)
T 2xzm_R 156 -----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI-----RYTFK------------AHE 213 (343)
T ss_dssp -----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE-----EEEEE------------CCS
T ss_pred -----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce-----eEEEc------------Ccc
Confidence 23457889999999999852 589999999999999944321 23333 345
Q ss_pred ccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 339 ASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
..|.+++|+|+|++|++|+ |+.|++||+.....+...+. +... |.+++|+|++++|++ +.|+
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~---------------v~~v~~sp~~~~la~-~~d~ 276 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGST---------------INQIAFNPKLQWVAV-GTDQ 276 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSC---------------EEEEEECSSSCEEEE-EESS
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCc---------------EEEEEECCCCCEEEE-ECCC
Confidence 7899999999999999986 69999999964344444442 2222 238999999988775 4588
Q ss_pred cEEEEeCCCCceeee-eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEE
Q 043890 418 LFRVFGCAPGSTEAT-TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSI 496 (509)
Q Consensus 418 ~i~iw~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 496 (509)
.|++|++.+++.... .+..+. +. ... ....|...|.+++|+|++++|
T Consensus 277 ~v~iw~~~~~~~~~~~~~~~~~--~~-----------------------------~~~-~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 277 GVKIFNLMTQSKAPVCTIEAEP--IT-----------------------------KAE-GQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp CEEEEESSSCCSCSEEECCCCS--GG-----------------------------GBT-TBCCSCCCEEEEEECSSSCCE
T ss_pred CEEEEEeCCCCCCceEEeecCc--ch-----------------------------hhh-hhcCCCCceEEEEECCCCCeE
Confidence 899999987654320 111110 00 000 001245779999999999999
Q ss_pred EEEec-CceEEEe
Q 043890 497 ACAAA-NSLYMYY 508 (509)
Q Consensus 497 a~~~~-~~i~v~~ 508 (509)
|+|+. +.+++|+
T Consensus 325 ~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 325 FAGFTDGVIRTFS 337 (343)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEecCCceEEEEE
Confidence 99987 8899997
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-39 Score=297.10 Aligned_cols=298 Identities=14% Similarity=0.248 Sum_probs=213.7
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee-cc-CCcchhhccc
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QS-HEPEFDYLKS 113 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~ 113 (509)
+.+|.+.|.+++|+|+ +||+|+.|+.|+|||+..+.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 4569999999999988 999999999999999986532 012333 33 76
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|++++| +|++++|++++.|++|++||+........
T Consensus 59 ----~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~------------------------------------- 95 (330)
T 2hes_X 59 ----KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTF------------------------------------- 95 (330)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------C-------------------------------------
T ss_pred ----CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccc-------------------------------------
Confidence 78999999 99999999999999999999864321000
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..++... +.+|...|.+++|+|++++|+++ .|+.|++||++.........
T Consensus 96 ------------------------~~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~---- 146 (330)
T 2hes_X 96 ------------------------EMDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI---- 146 (330)
T ss_dssp ------------------------CCEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE----
T ss_pred ------------------------cceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE----
Confidence 0011122 37899999999999999999999 89999999996432211110
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC--C
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--G 350 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~ 350 (509)
..+.+|...|.+++|+|++ .+|++++.|+.|++||++.+.. +.+.. +.+|...|.+++|+|+ +
T Consensus 147 ~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~--~~~~~------------~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW--ECVAV------------LNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE--EEEEE------------ECCCSSCEEEEEECCSSSS
T ss_pred EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe--eEEEE------------ccCCCCcEEEEEecCCCCe
Confidence 2467899999999999998 9999999999999999876531 11233 3445589999999998 7
Q ss_pred CEEEEec-CCeEEEEECCCCCC-------ceEEEee-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEE
Q 043890 351 RHILSRD-YMTLKLWDINMDSG-------PVATFQV-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 421 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 421 (509)
.+|++++ |+.|++||+..... ....+.. |... |++++|++++ +|++++.||.|+|
T Consensus 212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~s~~~-~l~s~~~dg~v~i 275 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ---------------VYNVAWGFNG-LIASVGADGVLAV 275 (330)
T ss_dssp CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC---------------EEEEEECTTS-CEEEEETTSCEEE
T ss_pred eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc---------------eEEEEEcCCC-EEEEEeCCCEEEE
Confidence 7888876 69999999875211 1122222 3332 3489999665 8999999999999
Q ss_pred EeCCCCce--eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC--CCcEEE
Q 043890 422 FGCAPGST--EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP--TENSIA 497 (509)
Q Consensus 422 w~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p--~~~~la 497 (509)
|+..+++. ....+.+|. ...|.+++|+| ++++||
T Consensus 276 w~~~~~~~~~~~~~~~~h~------------------------------------------~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 276 YEEVDGEWKVFAKRALCHG------------------------------------------VYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEETTEEEEEEEESCTTT------------------------------------------TSCEEEEEEC-----CCEE
T ss_pred EEcCCCceEEEeccccccc------------------------------------------cceEEEEEEecCCCceEEE
Confidence 99887642 221112222 12689999999 688999
Q ss_pred EEec-CceEEEeC
Q 043890 498 CAAA-NSLYMYYA 509 (509)
Q Consensus 498 ~~~~-~~i~v~~~ 509 (509)
+++. +.++||+.
T Consensus 314 s~s~Dg~v~~W~~ 326 (330)
T 2hes_X 314 TGGDDGIVNFWSL 326 (330)
T ss_dssp EEETTSEEEEEEC
T ss_pred EecCCCcEEEEEe
Confidence 9887 78999974
No 20
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-38 Score=347.29 Aligned_cols=377 Identities=13% Similarity=0.186 Sum_probs=265.1
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|++++|+|+|++||+|+.||.|++||+.+++. ...+.+|.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~--------- 657 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE--------- 657 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS---------
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC---------
Confidence 3457999999999999999999999999999999998877 67888898
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|.+++| +|++++|++++.||.|++||+.+++....... +......+.|++++...
T Consensus 658 ---~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~--- 714 (1249)
T 3sfz_A 658 ---DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDE---------------HSEQVNCCHFTNKSNHL--- 714 (1249)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------CSSCEEEEEECSSSSCC---
T ss_pred ---CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcC---------------CCCcEEEEEEecCCCce---
Confidence 88999999 99999999999999999999998876544332 23334556677755432
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee----
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD---- 269 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~---- 269 (509)
++++++.++.|++||+.+... ... +.+|...|.+++|+|++++|+++ .||.|++||+++++....+..
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~------~~~-~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKEC------RNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSE------EEE-ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred EEEEEeCCCeEEEEECCCcch------hhe-ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 456677888999999876543 223 37899999999999999999999 999999999987643322110
Q ss_pred --------------------------------------ccC-----CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEE
Q 043890 270 --------------------------------------VKP-----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 306 (509)
Q Consensus 270 --------------------------------------~~~-----~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~v 306 (509)
... ....+|...|.+++|+|++ .++++++.|+.|++
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVEL 866 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEE
Confidence 000 0012677889999999998 99999999999999
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCC----------------
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMD---------------- 369 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~---------------- 369 (509)
||+.++.. ...+. +|...|.+++|+|++++|++++ |+.|++||+...
T Consensus 867 wd~~~~~~----~~~~~------------~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 930 (1249)
T 3sfz_A 867 WNIDSRLK----VADCR------------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVF 930 (1249)
T ss_dssp EETTTTEE----EEEEC------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEE
T ss_pred EEcCCCce----eeecC------------CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEE
Confidence 99998753 23333 3346677777777777777764 477777775320
Q ss_pred --------------------------------------------------------------CCceEEEeeccccccccc
Q 043890 370 --------------------------------------------------------------SGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 370 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 387 (509)
......+.+|...
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~----- 1005 (1249)
T 3sfz_A 931 QENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA----- 1005 (1249)
T ss_dssp ETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC-----
T ss_pred cCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc-----
Confidence 1222222222222
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee------------------------------------
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA------------------------------------ 431 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------ 431 (509)
|.+++|+|++++|++++.||.|++||+.+++...
T Consensus 1006 ----------v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1006 ----------VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp ----------CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT
T ss_pred ----------eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC
Confidence 3378888888888888888888887776654431
Q ss_pred ---eeeccCCCceeEEEEcCCCCCCccc---ceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-Cce
Q 043890 432 ---TTLEASKNPMRRQVQTPSRPSRSLS---SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSL 504 (509)
Q Consensus 432 ---~~~~~~~~~v~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i 504 (509)
..+.+|..++.+++|+|++.....+ +..+.|+.........+. .|...|++++|+|++++||+++. +.+
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~----~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK----GHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC----CCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec----cCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 0334445555555555554432211 122222211111111111 35788999999999999999998 789
Q ss_pred EEEeC
Q 043890 505 YMYYA 509 (509)
Q Consensus 505 ~v~~~ 509 (509)
++|+.
T Consensus 1152 ~vwd~ 1156 (1249)
T 3sfz_A 1152 RIWNV 1156 (1249)
T ss_dssp CEEES
T ss_pred EEEEC
Confidence 99974
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.7e-39 Score=308.47 Aligned_cols=295 Identities=14% Similarity=0.178 Sum_probs=223.8
Q ss_pred eecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 37 VQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.+|.+.|+||+|+| ++++||+|+.||.|+|||+.+.+. .....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~---------------------~~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK---------------------PTFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---------------------CEEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---------------------eeEEEccCCC----------
Confidence 46889999999999 568999999999999999987654 1134556787
Q ss_pred hhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 116 IEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 116 ~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|++|+| +| ++++|++++.||+|++||++++.......
T Consensus 165 --~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------------------------------------ 204 (435)
T 4e54_B 165 --GSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGNILRVFAS------------------------------------ 204 (435)
T ss_dssp --CCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSCEEEEEEC------------------------------------
T ss_pred --CCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCCceeEEec------------------------------------
Confidence 88999999 86 68899999999999999997643211100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
...+...+.+++|+|++++|++| .||.|++||++... . .
T Consensus 205 -------------------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~--------~ 244 (435)
T 4e54_B 205 -------------------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L--------W 244 (435)
T ss_dssp -------------------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C--------C
T ss_pred -------------------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e--------E
Confidence 02334457789999999999999 99999999997532 2 3
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+.+|...|.+++|+|++..+|++++.|+.|++||+++.+... .+ ....+|...|.+++|+|+|++|
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----~~---------~~~~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----SF---------LYSLPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----CC---------SBCCBCSSCEEECCBCTTSSEE
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc----eE---------EEeeeccccccceeECCCCCee
Confidence 6778999999999999986789999999999999999865311 11 1123466899999999999999
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee------------CCCcEE
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS------------YSNLFR 420 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~ 420 (509)
++++ |+.|+|||+.+ ......+..|........ .+..+.|+|++.+++++. .++.|+
T Consensus 312 ~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp EEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred EEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence 9986 69999999997 566666665543221100 011456666666665553 345799
Q ss_pred EEeCCCCceeeeeec-cCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEE-EEcCCCcEEEE
Q 043890 421 VFGCAPGSTEATTLE-ASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHL-AWHPTENSIAC 498 (509)
Q Consensus 421 iw~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~p~~~~la~ 498 (509)
+||..+++.+. .+. +|. ..|.++ +|||++++||+
T Consensus 382 iwd~~~g~~~~-~l~~~~~-------------------------------------------~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 382 VFDGNSGKMMC-QLYDPES-------------------------------------------SGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp EECSSSCCEEE-EECCSSC-------------------------------------------CCCCCEEEECTTSSCEEE
T ss_pred EEECCCCcEEE-EEeCCCC-------------------------------------------CcEEEEEEECCCCCEEEE
Confidence 99999998877 433 332 456665 79999999999
Q ss_pred EecCceEEEeC
Q 043890 499 AAANSLYMYYA 509 (509)
Q Consensus 499 ~~~~~i~v~~~ 509 (509)
|+++.|+||+.
T Consensus 418 g~d~~i~iW~~ 428 (435)
T 4e54_B 418 AMGYHILIWSQ 428 (435)
T ss_dssp ECSSEEEECCC
T ss_pred EcCCcEEEEEC
Confidence 99999999974
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-37 Score=290.52 Aligned_cols=300 Identities=14% Similarity=0.210 Sum_probs=235.3
Q ss_pred cCcceecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 33 AGEEVQEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
++.+.+|.+.|++|+|+|+ +++||||+.||+|+|||+...+. ........+.+|.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------------------~~~~~~~~l~~h~------ 86 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------------------NYGIPQRALRGHS------ 86 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------------------CSEEEEEEECCCS------
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------------------ccceeeEEEeCCC------
Confidence 4456679999999999998 68999999999999999987654 1112356778888
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..|.+++| +|++++|++++.|+.|++|+.........
T Consensus 87 ------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~----------------------------------- 123 (340)
T 4aow_A 87 ------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRR----------------------------------- 123 (340)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeee-----------------------------------
Confidence 78999999 99999999999999999999876542211
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
...+...+..+.+++++++|+++ .|+.+++||+.......
T Consensus 124 ----------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~----- 164 (340)
T 4aow_A 124 ----------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT----- 164 (340)
T ss_dssp ----------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-----
T ss_pred ----------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-----
Confidence 24455667888999999999999 99999999988654322
Q ss_pred cCCccCCCccceEEEEEeCCCC-cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 271 KPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
.....|...+..++|++++. .++++++.|+.|++||+++++. ...+. +|...|.+++|+|+
T Consensus 165 --~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~~------------~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 165 --VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNHI------------GHTGYLNTVTVSPD 226 (340)
T ss_dssp --ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEEC------------CCSSCEEEEEECTT
T ss_pred --EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce----eeEec------------CCCCcEEEEEECCC
Confidence 25677899999999998752 4788999999999999998764 33333 34578999999999
Q ss_pred CCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 350 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 350 ~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+++|++|+ |+.|++||+++ .+++..+..+.. +..++|+|++.++ +++.|+.|++||++++.
T Consensus 227 ~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 227 GSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDI----------------INALCFSPNRYWL-CAATGPSIKIWDLEGKI 288 (340)
T ss_dssp SSEEEEEETTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred CCEEEEEeCCCeEEEEEecc-CceeeeecCCce----------------EEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence 99999986 69999999996 666666665432 2288999987655 56779999999999887
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
.+. .+..+.... . ...|...|++++|+|++++||+|+. +.|+||
T Consensus 289 ~~~-~~~~~~~~~------------------------------~----~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 289 IVD-ELKQEVIST------------------------------S----SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEE-EECCC-----------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEE-eccccceee------------------------------e----ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 776 554332100 0 0124678999999999999999988 789999
Q ss_pred eC
Q 043890 508 YA 509 (509)
Q Consensus 508 ~~ 509 (509)
++
T Consensus 334 ~~ 335 (340)
T 4aow_A 334 QV 335 (340)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=312.02 Aligned_cols=340 Identities=11% Similarity=0.162 Sum_probs=259.1
Q ss_pred cccceEEEEECCCCC-eEEee----------cCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcc
Q 043890 39 EVDIISAIEFDKTGD-HLATG----------DRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPE 107 (509)
Q Consensus 39 h~~~I~~v~~s~~~~-~la~g----------~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 107 (509)
+...|.+++|+|+++ +||+| +.|+.|+|||+.+.... + .... ..|.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-~-------------------~~~~-~~~~-- 67 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-K-------------------PIAS-LQVD-- 67 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-S-------------------CSCC-CCCS--
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-c-------------------EEEE-EecC--
Confidence 567899999999986 99999 88999999999876530 0 0111 1344
Q ss_pred hhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccC
Q 043890 108 FDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLAN 187 (509)
Q Consensus 108 ~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (509)
..|++++| +|++++|++++.||.|++||+.+....
T Consensus 68 ----------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~--------------------------------- 102 (416)
T 2pm9_A 68 ----------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNA--------------------------------- 102 (416)
T ss_dssp ----------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSC---------------------------------
T ss_pred ----------CceEEEEE--CCCCCeEEEEccCCeEEEeeccccccc---------------------------------
Confidence 77999999 999999999999999999999763100
Q ss_pred CCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCC---
Q 043890 188 GGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISN--- 262 (509)
Q Consensus 188 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~--- 262 (509)
...... +.+|...|.+++|+|+ +++|+++ .|+.|++||+++.+
T Consensus 103 -------------------------------~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 103 -------------------------------INSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp -------------------------------CCEEEE-CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred -------------------------------ccchhh-ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 001111 3678999999999998 8999999 89999999999876
Q ss_pred ---ceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 263 ---QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 263 ---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
.... ......|...|.+++|+|++..+|++++.|+.|++||+++++. +..+..+. ...+|..
T Consensus 151 ~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~------~~~~~~~ 215 (416)
T 2pm9_A 151 SNYTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTS------PNSGIKQ 215 (416)
T ss_dssp TTCCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCC------CSSCCCC
T ss_pred ccccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEeccc------cccccCC
Confidence 2221 1245678999999999999548999999999999999998764 34443321 0123357
Q ss_pred cEEEEEEecCC-CEEEEecC-C---eEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeEEEcC-CCCEEEE
Q 043890 340 SISDIKFAKDG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVAT 412 (509)
Q Consensus 340 ~i~~~~~s~~~-~~l~s~~~-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 412 (509)
.|.+++|+|++ .+++++++ + .|++||+++...++..+. .|...+. +++|+| ++++|++
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~---------------~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL---------------SLDWCHQDEHLLLS 280 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEE---------------EEEECSSCSSCEEE
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCcee---------------EEEeCCCCCCeEEE
Confidence 89999999997 57888764 6 999999997546677776 6766544 899999 9999999
Q ss_pred eeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCc----ccceeeEeecCCCCCcccCCC-------------
Q 043890 413 GSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRS----LSSITRVVRRGSDVPGVDTNG------------- 475 (509)
Q Consensus 413 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------- 475 (509)
++.|+.|++||+.+++++. .+.+|..++..++|+|+++... ..+..+.|+............
T Consensus 281 ~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLS-QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EESSSEEEEECSSSCCEEE-EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred EeCCCCEEEeeCCCCccce-eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 9999999999999999988 9999999999999999985422 224566776322221111100
Q ss_pred ------------------cccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 476 ------------------NSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 476 ------------------~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
..-.+..++..++|+|++++||+++. +.|+||++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 00014567889999999999999997 88999974
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=292.08 Aligned_cols=251 Identities=16% Similarity=0.250 Sum_probs=199.0
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|...|.+++|+|++ .|++|+.||.|+|||+.+++. .......+.+|.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~-------------------~~~~~~~~~~H~----------- 127 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENET-------------------LIVSKFCKYEHD----------- 127 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSS-------------------CEEEEEEEECCS-----------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc-------------------eeEeeccccCCC-----------
Confidence 4577889999999985 678999999999999998775 011123456787
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+.|++++| +|++++|++|+.|++|++||+.+++...
T Consensus 128 -~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~~~----------------------------------------- 163 (344)
T 4gqb_B 128 -DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVVLS----------------------------------------- 163 (344)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE-----------------------------------------
T ss_pred -CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------------------
Confidence 88999999 9999999999999999999998765322
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
. +.+|...|.+++|++++. +|+++ .|+.|++||+++++....+ .
T Consensus 164 ---------------------------~-~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~------~ 209 (344)
T 4gqb_B 164 ---------------------------S-YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI------G 209 (344)
T ss_dssp ---------------------------E-ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC------C
T ss_pred ---------------------------E-EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee------e
Confidence 1 378999999999999874 77888 8999999999987755432 3
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC-CEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-RHI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l 353 (509)
...+...+.+++|+|++.++|++|+.|+.|++||+++++. +..+.. |...|.+++|+|++ ++|
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~------------h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAV------------HSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEEC------------CSSCEEEEEECSSSSCCE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcC------------CCCCEEEEEEccCCCeEE
Confidence 3456678999999997768999999999999999998864 344444 45789999999998 578
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCCCcEEEEeCCCCce
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~ 429 (509)
++|+ |++|+|||+++ + .+..+.+|...+. +++|+|+++ +|++++.|++|++|++.+...
T Consensus 274 asgs~D~~i~vwd~~~-~-~~~~~~~H~~~V~---------------~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSSL-S-ELFRSQAHRDFVR---------------DATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEETTSCEEEECTTC-C-EEEEECCCSSCEE---------------EEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEeCCCeEEEEECCC-C-cEEEEcCCCCCEE---------------EEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 8876 69999999986 3 3455677876654 999999986 567999999999999986543
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-38 Score=346.47 Aligned_cols=411 Identities=13% Similarity=0.182 Sum_probs=298.1
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcc--e-----------------
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEF--R----------------- 96 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------- 96 (509)
+.+|.+.|.+++|+|++++||+|+.||.|+|||+.+++. ...+..+...+..+.++|.. .
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~ 731 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence 346999999999999999999999999999999998765 33444455556666666521 1
Q ss_pred ---EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhcc--------------
Q 043890 97 ---YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADM-------------- 159 (509)
Q Consensus 97 ---~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------- 159 (509)
....+.+|. +.|++++| +|++++|++++.||.|++||+.+++.......
T Consensus 732 ~~~~~~~~~~h~------------~~v~~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 732 QKECRNTMFGHT------------NSVNHCRF--SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp SSSEEEEECCCS------------SCEEEEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred CcchhheecCCC------------CCEEEEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence 122333444 88999999 99999999999999999999988754333221
Q ss_pred --CCCCCcccCCCCccc------------------------CCCCccCCccccCCCCCcceecCCCCCCCcccccccccc
Q 043890 160 --NVDPSKAVGNGNVAS------------------------SSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSN 213 (509)
Q Consensus 160 --~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 213 (509)
....+.+.++|..+. +......+.|+|++. +.+.++.++.+++|++...
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~~~dg~v~vwd~~~~ 872 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-----LAVIALSQYCVELWNIDSR 872 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-----EEEEECSSSCEEEEETTTT
T ss_pred cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-----EEEEEeCCCeEEEEEcCCC
Confidence 111223344443321 222333344555543 3455677888999998764
Q ss_pred ccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCc-----------------------------
Q 043890 214 ETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ----------------------------- 263 (509)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~----------------------------- 263 (509)
.. ... +.+|...|.+++|+|++++|+++ .||.|++|++.....
T Consensus 873 ~~------~~~-~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 873 LK------VAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp EE------EEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred ce------eee-cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 32 222 37899999999999999999998 899999998653100
Q ss_pred --------------------------------------eeeEeeccC----CccCCCccceEEEEEeCCCCcEEEEEEcC
Q 043890 264 --------------------------------------SFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSK 301 (509)
Q Consensus 264 --------------------------------------~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~~l~~~~~d 301 (509)
...++++.. ..+.+|...|.+++|+|++ ++|++++.|
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d 1024 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSED 1024 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSS
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCC
Confidence 000111110 1345688999999999998 999999999
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccc
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
|.|++||+.+++. .. ...|...|.++.|+|++.+++.+.++.|++||+.+ ++....+..|..
T Consensus 1025 g~i~vwd~~~~~~-----~~------------~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDY-----VF------------LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQG 1086 (1249)
T ss_dssp SBEEEEETTTTEE-----EC------------CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSS
T ss_pred CEEEEEECCCCce-----EE------------EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCC
Confidence 9999999998763 11 12345789999999988766666789999999997 788888888877
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc---ce
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS---SI 458 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~---~~ 458 (509)
.+. +++|+|++++|++++.|+.|++||+.+++.+. .+.+|..++++++|+|++.....+ +.
T Consensus 1087 ~v~---------------~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~-~l~~h~~~v~~~~~s~dg~~lat~~~dg~ 1150 (1249)
T 3sfz_A 1087 TVL---------------SCAISSDATKFSSTSADKTAKIWSFDLLSPLH-ELKGHNGCVRCSAFSLDGILLATGDDNGE 1150 (1249)
T ss_dssp CCC---------------CEEECSSSSSCEEECCSSCCCEECSSSSSCSB-CCCCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred cEE---------------EEEECCCCCEEEEEcCCCcEEEEECCCcceee-eeccCCCcEEEEEECCCCCEEEEEeCCCE
Confidence 655 89999999999999999999999999999888 999999999999999998764322 33
Q ss_pred eeEeecCCCCCcccC-----CCcccccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 459 TRVVRRGSDVPGVDT-----NGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 459 ~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
.+.|+.........+ ......|...|++++|+|++++|++++ +.+++|+.
T Consensus 1151 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~ 1205 (1249)
T 3sfz_A 1151 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNV 1205 (1249)
T ss_dssp CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCS
T ss_pred EEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEEC
Confidence 555552221111111 000123577899999999999999887 89999973
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=292.92 Aligned_cols=290 Identities=13% Similarity=0.157 Sum_probs=236.7
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|++++|+|++++||+|+.||.|++||+.+++. ...+.+|.
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~h~--------- 74 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------------------LGTLDGHT--------- 74 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------------------EEEECCCS---------
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------------------hhhhhhcC---------
Confidence 4567999999999999999999999999999999988876 67788888
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|++++|++++.||.|++||+.+++....
T Consensus 75 ---~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------------------------- 111 (369)
T 3zwl_B 75 ---GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVAT-------------------------------------- 111 (369)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE--------------------------------------
Confidence 78999999 99999999999999999999987653221
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC-----CeEEEEEccCCCceeeEe
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLEISNQSFNIV 268 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----g~i~iwd~~~~~~~~~~~ 268 (509)
..+...+.+++|+|++++++++ .+ +.|++||++.......+.
T Consensus 112 --------------------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 112 --------------------------------WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp --------------------------------EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred --------------------------------eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 2266779999999999999998 77 999999998765432221
Q ss_pred ecc---CCccCCCcc--ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 269 DVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 269 ~~~---~~~~~~~~~--~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
... ...+..|.. .+.+++|+|++ ++|++++.||.|++||+++... ....+.. |...|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~------------~~~~v~~ 223 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE---YVDSIDL------------HEKSISD 223 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTE---EEEEEEC------------CSSCEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE---eEEEEec------------CCCceeE
Confidence 111 112334444 89999999998 9999999999999999998321 1334433 3478999
Q ss_pred EEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-----
Q 043890 344 IKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN----- 417 (509)
Q Consensus 344 ~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 417 (509)
++|+|++++|++++ ++.|++||+++ .+.+..+. +...+ ..++|+|+++++++++.++
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-TDCPL---------------NTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE-CSSCE---------------EEEEECSSSSEEEEEECCC-----
T ss_pred EEECCCCCEEEEecCCceEEEEECCC-Cceeeeec-CCCCc---------------eeEEecCCCceEEEeecCCCceEE
Confidence 99999999999986 59999999996 66666665 33322 2899999999999999988
Q ss_pred ---------cEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEE
Q 043890 418 ---------LFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLA 488 (509)
Q Consensus 418 ---------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 488 (509)
.+++||+.+++.+. .+.+|. ..|.+++
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~-------------------------------------------~~v~~~~ 322 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIG-RVQGHF-------------------------------------------GPLNTVA 322 (369)
T ss_dssp --------CEEEEEETTTCCEEE-EEECCS-------------------------------------------SCEEEEE
T ss_pred EEecCCCcceeEEEecCCCcchh-heeccc-------------------------------------------CcEEEEE
Confidence 89999998888776 666554 6689999
Q ss_pred EcCCCcEEEEEec-CceEEEe
Q 043890 489 WHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 489 ~~p~~~~la~~~~-~~i~v~~ 508 (509)
|+|++++|++++. +.+++|+
T Consensus 323 ~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 323 ISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEE
Confidence 9999999999987 7899997
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-38 Score=302.36 Aligned_cols=334 Identities=16% Similarity=0.174 Sum_probs=246.9
Q ss_pred eecccceEEEEECCCCC-eEEeecCCCeEEEEEc----cCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 37 VQEVDIISAIEFDKTGD-HLATGDRGGRVVLFER----TDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
..|.+.|.+++|+|+++ +||+|+.||.|++|++ .+++.. ..+. +...+...+.+|.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~------ 102 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-WKLT------------IIAELRHPFALSA------ 102 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-EEEE------------EEEEEECCCCCC-------
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-cccc------------ccccccccccccc------
Confidence 45779999999999999 9999999999999999 665520 0000 0000111122210
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
....+.+.|++++| +|++++|++++.||.|++||.. ++..
T Consensus 103 ~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~~-~~~~------------------------------------- 142 (425)
T 1r5m_A 103 SSGKTTNQVTCLAW--SHDGNSIVTGVENGELRLWNKT-GALL------------------------------------- 142 (425)
T ss_dssp -----CBCEEEEEE--CTTSSEEEEEETTSCEEEEETT-SCEE-------------------------------------
T ss_pred cccCCCCceEEEEE--cCCCCEEEEEeCCCeEEEEeCC-CCee-------------------------------------
Confidence 00011268999999 9999999999999999999932 2211
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
.. +..|...|.+++|+|++++|+++ .|+.|++||+++++....
T Consensus 143 -------------------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---- 186 (425)
T 1r5m_A 143 -------------------------------NV-LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH---- 186 (425)
T ss_dssp -------------------------------EE-ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE----
T ss_pred -------------------------------ee-ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE----
Confidence 11 36788899999999999999999 899999999987664432
Q ss_pred cCCccCCCccc---------------eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc
Q 043890 271 KPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT 335 (509)
Q Consensus 271 ~~~~~~~~~~~---------------i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
+..+... +.++.|+|++ .+++++.++.|++||+++++. ...+..
T Consensus 187 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~----~~~~~~----------- 245 (425)
T 1r5m_A 187 ----FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP----TGKLIG----------- 245 (425)
T ss_dssp ----ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC----SEEECC-----------
T ss_pred ----eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce----eeeecc-----------
Confidence 2233333 8899999985 689999999999999998763 333333
Q ss_pred cccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 336 EIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
|...|.+++|+|++++|++++ ++.|++||+++ .+.+..+..|...+. +++|+|++ +|++++
T Consensus 246 -~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~---------------~~~~~~~~-~l~~~~ 307 (425)
T 1r5m_A 246 -HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIV---------------SASWVGDD-KVISCS 307 (425)
T ss_dssp -CSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCEE---------------EEEEETTT-EEEEEE
T ss_pred -CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccEE---------------EEEECCCC-EEEEEe
Confidence 447899999999999999986 59999999996 677777777766544 89999999 999999
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc---ceeeEeecCCCC--------------------Ccc
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS---SITRVVRRGSDV--------------------PGV 471 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~---~~~~~~~~~~~~--------------------~~~ 471 (509)
.|+.|++||+.+++.+. .+..|..++..++|+|++.....+ +..+.|+..... ...
T Consensus 308 ~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 308 MDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp TTSEEEEEETTTTEEEE-EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred CCCcEEEEECCCCcEeE-ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 99999999999999888 999999999999999988764332 334555421111 001
Q ss_pred cCCCccccccc--ceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 472 DTNGNSFDFTT--KLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 472 ~~~~~~~~~~~--~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.+. .+.. .|.+++|+|++++|++++. +.+++|+.
T Consensus 387 ~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 387 SYQ----SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEC----CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred hhc----CcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 111 2333 8999999999999998888 78999974
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.9e-38 Score=317.41 Aligned_cols=401 Identities=11% Similarity=0.088 Sum_probs=273.9
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCC----CCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDT----KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.|.+.|.+++|+|++++||+++ ++.|+||++.++ +. ...+.+|.
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~-----------------------~~~~~~h~-------- 63 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP-----------------------VVQFTGHG-------- 63 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS-----------------------EEEECTTT--------
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcccc-----------------------ceEEecCC--------
Confidence 4889999999999999999998 789999999977 44 67888888
Q ss_pred hhhhcc-ceeeEEEEcC--CCceEEEeeCCCeEEEEeccch--------hhhhhhccCCC---CCcccCCCCcccC----
Q 043890 114 LEIEEK-INKIRWCQTA--NGALFLLSTNDKTIKFWKVQEK--------KVKKIADMNVD---PSKAVGNGNVASS---- 175 (509)
Q Consensus 114 ~~~~~~-v~~l~~~~~~--~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~---- 175 (509)
.. |++++| +| ++++|++++.||.|++||+.++ +.......+.. .+.+.++++.++.
T Consensus 64 ----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 64 ----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp ----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred ----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 88 999999 99 9999999999999999999755 22222222222 2234455543321
Q ss_pred ----------------------CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeeccccc--
Q 043890 176 ----------------------SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDY-- 231 (509)
Q Consensus 176 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (509)
......+.|+|++.. .+++++.++.+++||+.... +... +.+|..
T Consensus 138 ~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~d~~v~vwd~~~~~------~~~~-~~~~~~~~ 206 (615)
T 1pgu_A 138 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM----RSMTVGDDGSVVFYQGPPFK------FSAS-DRTHHKQG 206 (615)
T ss_dssp SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC----EEEEEETTTEEEEEETTTBE------EEEE-ECSSSCTT
T ss_pred CCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc----EEEEEeCCCcEEEEeCCCcc------eeee-ecccCCCC
Confidence 122233455555532 34566778899999976543 2233 367888
Q ss_pred -CeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc-C---CCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 232 -HINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANM-E---DLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 232 -~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-~---~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
.|.+++|+|+ +++|+++ .||.|++||+++++... .+ . .|...|.+++|+ ++ .+|++++.|+.|
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i 276 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DS-QKFATVGADATI 276 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEE
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE--------EecccccccCCceEEEEEc-CC-CEEEEEcCCCcE
Confidence 9999999999 9999999 89999999999876543 23 3 789999999999 87 999999999999
Q ss_pred EEEECCCCcccCCceeeeccccC---------------------------------CCCccccc----------------
Q 043890 305 RLIDLRQSALCDSHAILFEEQEA---------------------------------PGSRSFFT---------------- 335 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~---------------- 335 (509)
++||+++++.. ..+..+.. ......+.
T Consensus 277 ~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~ 352 (615)
T 1pgu_A 277 RVWDVTTSKCV----QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLIS 352 (615)
T ss_dssp EEEETTTTEEE----EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEE
T ss_pred EEEECCCCcEE----EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEE
Confidence 99999976531 11111100 00001122
Q ss_pred -----------------cccccEEEEEEecCCCEEEEec-CCeEEEEECCCC----------------------------
Q 043890 336 -----------------EIIASISDIKFAKDGRHILSRD-YMTLKLWDINMD---------------------------- 369 (509)
Q Consensus 336 -----------------~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~---------------------------- 369 (509)
.|...|.+++| +++..|++++ ++.|++||+.+.
T Consensus 353 ~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 353 GSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred ECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 24445555555 3345555543 477777766421
Q ss_pred -----CCceEEEe-----------------ec--cccccccccc--------ccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 370 -----SGPVATFQ-----------------VH--EYLRPKLCDL--------YENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 370 -----~~~~~~~~-----------------~~--~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
++.+..+. +. .+.+ .+.++ ........|.+++|+|++++|++++.||
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 510 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI-QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 510 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE-EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeE-EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC
Confidence 11111111 00 0000 00000 0011112356999999999999999999
Q ss_pred cEEEEeCCCCceeeeeecc-CCCceeEEEEcC----------CCCCCccc---ceeeEeecCCC-CCcccCCCccccccc
Q 043890 418 LFRVFGCAPGSTEATTLEA-SKNPMRRQVQTP----------SRPSRSLS---SITRVVRRGSD-VPGVDTNGNSFDFTT 482 (509)
Q Consensus 418 ~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~s~----------~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~ 482 (509)
.|++||+.+++.+. .+.+ |..+++.++|+| ++.....+ +..+.|+.... .....+. .|..
T Consensus 511 ~i~iw~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~h~~ 585 (615)
T 1pgu_A 511 KILLYDLQSREVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN----AHKD 585 (615)
T ss_dssp CEEEEETTTTEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT----SSTT
T ss_pred eEEEeeCCCCccee-EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh----cCcc
Confidence 99999999999988 8887 999999999999 66653322 34556653322 2222222 3578
Q ss_pred ceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 483 KLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 483 ~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.|++++|+|+++ |++++. +.+++|+.
T Consensus 586 ~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 999999999999 888887 78999973
No 29
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.3e-38 Score=296.21 Aligned_cols=302 Identities=14% Similarity=0.204 Sum_probs=231.8
Q ss_pred cceecccceEEEEECCCC-CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee--ccCCcchhhc
Q 043890 35 EEVQEVDIISAIEFDKTG-DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF--QSHEPEFDYL 111 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~-~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~ 111 (509)
.+.+|.+.|.+++|+|++ ++||+|+.||.|+|||+.+.+. ...+ .+|.
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~h~------ 118 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----------------------TSFIQGMGPG------ 118 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----------------------EEEECCCSTT------
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----------------------ceeeecCCcC------
Confidence 345699999999999999 9999999999999999997776 3333 3576
Q ss_pred cchhhhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 112 KSLEIEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..|.+++| +| ++++|++++.|+.|++||+.+......
T Consensus 119 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------- 156 (383)
T 3ei3_B 119 ------DAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGSVIQVF---------------------------------- 156 (383)
T ss_dssp ------CBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSCEEEEE----------------------------------
T ss_pred ------CceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCCceEEE----------------------------------
Confidence 78999999 88 778999999999999999985321110
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
.. ...|...|.+++|+|++++|+++ .|+.|++||++ ++...
T Consensus 157 --------------------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~---- 198 (383)
T 3ei3_B 157 --------------------------------AK-TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF---- 198 (383)
T ss_dssp --------------------------------EC-CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE----
T ss_pred --------------------------------ec-cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE----
Confidence 00 13456789999999999999999 99999999995 33332
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK- 348 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 348 (509)
.+..|...|.+++|+|++..+|++++.|+.|++||+++.+.....+..+ +|...|.+++|+|
T Consensus 199 ----~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~ 261 (383)
T 3ei3_B 199 ----KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------------PHEKPVNAAYFNPT 261 (383)
T ss_dssp ----EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------------ECSSCEEEEEECTT
T ss_pred ----EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------------cCCCceEEEEEcCC
Confidence 4567999999999999983399999999999999999854221222332 2447899999999
Q ss_pred CCCEEEEec-CCeEEEEECCCCCCceEEEeeccccccc----ccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 349 DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPK----LCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 349 ~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
++++|++++ |+.|++||+++ ......+..|...... +...+. ....+..++|+|++++ +++.|+.|++||
T Consensus 262 ~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 262 DSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWH--PMYDLIVAGRYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp TSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEEC--SSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEecc--CCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence 999999986 59999999997 5666676665432211 000000 0011225677788777 788999999999
Q ss_pred CCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCc
Q 043890 424 CAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANS 503 (509)
Q Consensus 424 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 503 (509)
+.+++.+. .+.+|. +...+..++|+|++++||+++++.
T Consensus 337 ~~~~~~~~-~l~~~~-----------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~ 374 (383)
T 3ei3_B 337 ANSGGLVH-QLRDPN-----------------------------------------AAGIISLNKFSPTGDVLASGMGFN 374 (383)
T ss_dssp TTTCCEEE-EECBTT-----------------------------------------BCSCCCEEEECTTSSEEEEEETTE
T ss_pred cCCCceee-eecCCC-----------------------------------------CCceEEEEEEecCccEEEEecCCc
Confidence 99999887 666543 134577789999999999999899
Q ss_pred eEEEeC
Q 043890 504 LYMYYA 509 (509)
Q Consensus 504 i~v~~~ 509 (509)
|++|+.
T Consensus 375 i~iw~~ 380 (383)
T 3ei3_B 375 ILIWNR 380 (383)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999984
No 30
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=289.99 Aligned_cols=258 Identities=17% Similarity=0.250 Sum_probs=216.1
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT 99 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (509)
..|++...-. .....+.+|...|.+++|++++.++|+|+.|+.|++||+.+++. ..
T Consensus 61 ~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~-----------------------~~ 116 (321)
T 3ow8_A 61 KVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-----------------------IK 116 (321)
T ss_dssp EEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EE
T ss_pred EEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE-----------------------EE
Confidence 4577653210 01223456999999999999999999999999999999998876 56
Q ss_pred eeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 100 EFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 100 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
.+..|. ..+.+++| +|++++|++++.||.|++|++.+++....
T Consensus 117 ~~~~~~------------~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~----------------------- 159 (321)
T 3ow8_A 117 SIDAGP------------VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS----------------------- 159 (321)
T ss_dssp EEECCT------------TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE-----------------------
T ss_pred EEeCCC------------ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE-----------------------
Confidence 677776 67899999 99999999999999999999987642211
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEc
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 258 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~ 258 (509)
+..|...+.+++|+|++++|+++ .||.|++||+
T Consensus 160 ----------------------------------------------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~ 193 (321)
T 3ow8_A 160 ----------------------------------------------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193 (321)
T ss_dssp ----------------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ----------------------------------------------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 25567789999999999999999 9999999999
Q ss_pred cCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc
Q 043890 259 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
++++... .+.+|...|.+++|+|++ ++|++++.|+.|++||++.++. ...+. +|.
T Consensus 194 ~~~~~~~--------~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~------------~h~ 248 (321)
T 3ow8_A 194 ATGKLLH--------TLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLS------------GHA 248 (321)
T ss_dssp TTTEEEE--------EECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCE----EEEEC------------CCS
T ss_pred CCCcEEE--------EEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcce----eEEEc------------CCC
Confidence 9876432 467899999999999998 9999999999999999998763 33333 455
Q ss_pred ccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 339 ASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
..|.+++|+|++++|++++ |+.|+|||+.+ .+++..+..|...+. +++|+|++++|++++.|+
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~h~~~v~---------------~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVHTFFDHQDQVW---------------GVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE---------------EEEECTTSSEEEEEETTC
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEcCCCCcEE---------------EEEECCCCCEEEEEeCCC
Confidence 7899999999999999986 59999999997 788888888876654 899999999999999999
Q ss_pred cEEEEeCC
Q 043890 418 LFRVFGCA 425 (509)
Q Consensus 418 ~i~iw~~~ 425 (509)
.|+|||+.
T Consensus 313 ~i~vwd~p 320 (321)
T 3ow8_A 313 EIHIYDCP 320 (321)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999964
No 31
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.3e-37 Score=322.88 Aligned_cols=328 Identities=18% Similarity=0.229 Sum_probs=263.2
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++|+|++++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~---------- 55 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE---------- 55 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS----------
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC----------
Confidence 456999999999999999999999999999999988776 67788888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|++++| +|++++|++++.||.|++||+.+++....
T Consensus 56 --~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--------------------------------------- 92 (814)
T 3mkq_A 56 --TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------- 92 (814)
T ss_dssp --SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEE---------------------------------------
Confidence 78999999 89999999999999999999987653221
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|...|++++|+|++++|+++ .||.|++||++++..... .
T Consensus 93 ------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~-------~ 135 (814)
T 3mkq_A 93 ------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-------T 135 (814)
T ss_dssp ------------------------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE-------E
T ss_pred ------------------------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE-------E
Confidence 36788999999999999999999 899999999997644332 4
Q ss_pred cCCCccceEEEEEeC-CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec--CCC
Q 043890 275 MEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK--DGR 351 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~ 351 (509)
+..|...|.+++|+| ++ ..|++++.||.|++||++.+.. ...+..+ +...+.+++|+| ++.
T Consensus 136 ~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~-----------~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTP----NFTLTTG-----------QERGVNYVDYYPLPDKP 199 (814)
T ss_dssp EECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSC----SEEEECC-----------CTTCCCEEEECCSTTCC
T ss_pred EcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcc----eeEEecC-----------CCCCEEEEEEEECCCCC
Confidence 567899999999999 66 8999999999999999987653 2233222 225799999999 999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
+|++++ ++.|++||+.+ ...+..+..|...+. +++|+|++++|++++.||.|++||+.+++.+
T Consensus 200 ~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~---------------~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 200 YMITASDDLTIKIWDYQT-KSCVATLEGHMSNVS---------------FAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp EEEEECTTSEEEEEETTT-TEEEEEEECCSSCEE---------------EEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred EEEEEeCCCEEEEEECCC-CcEEEEEcCCCCCEE---------------EEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999986 59999999996 677888887776544 8999999999999999999999999999988
Q ss_pred eeeeccCCCceeEEEEcCCCCCC-ccc---ceeeEeecCCCCCcc------------------------------cC-CC
Q 043890 431 ATTLEASKNPMRRQVQTPSRPSR-SLS---SITRVVRRGSDVPGV------------------------------DT-NG 475 (509)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~~~~~-~~~---~~~~~~~~~~~~~~~------------------------------~~-~~ 475 (509)
. .+..|...+..++|+|++... ... +....+......... ++ .+
T Consensus 264 ~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 264 K-TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp E-EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred E-EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 8 999999999999999998753 111 112222211110000 00 00
Q ss_pred cc--------cccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 476 NS--------FDFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 476 ~~--------~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
.. ..+...+.+++|+|++++|++++++.+++|+.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~ 384 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTA 384 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEET
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEEC
Confidence 00 01234578999999999999999999999873
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-37 Score=286.05 Aligned_cols=284 Identities=12% Similarity=0.195 Sum_probs=229.6
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+.|.+++|+|++++|++++ ||.|++||+.+.+.. ..+ ......+|.
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-~~~-----------------~~~~~~~~~----------- 97 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-SPV-----------------SQLDCLNRD----------- 97 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-SCS-----------------EEEECSCTT-----------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-eee-----------------ecccccCCC-----------
Confidence 46999999999999999999999 999999999876540 000 011122555
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.+++| +|++++|++++.||.|++||+.+++....
T Consensus 98 -~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---------------------------------------- 134 (337)
T 1gxr_A 98 -NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIK---------------------------------------- 134 (337)
T ss_dssp -SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEE----------------------------------------
T ss_pred -CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCccee----------------------------------------
Confidence 78999999 99999999999999999999987642111
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
. .+..|...+.+++|+|++++|+++ .||.|++||+++++... .+
T Consensus 135 --------------------------~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--------~~ 179 (337)
T 1gxr_A 135 --------------------------A-ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR--------QF 179 (337)
T ss_dssp --------------------------E-EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------EE
T ss_pred --------------------------e-ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee--------ee
Confidence 1 136788889999999999999999 89999999999765432 45
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
..|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+. +...+.+++|+|++++|++
T Consensus 180 ~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~-------------~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 180 QGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQ----LQQHD-------------FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEE-------------CSSCEEEEEECTTSSEEEE
T ss_pred ecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCce----Eeeec-------------CCCceEEEEECCCCCEEEE
Confidence 6789999999999998 9999999999999999998764 23332 2257999999999999999
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeee
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 434 (509)
++ ++.|++||+++ .+ ...+..|...+. +++|+|++++|++++.||.|++|++.+++.+. ..
T Consensus 242 ~~~~~~i~~~~~~~-~~-~~~~~~~~~~v~---------------~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~ 303 (337)
T 1gxr_A 242 GMESSNVEVLHVNK-PD-KYQLHLHESCVL---------------SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QS 303 (337)
T ss_dssp EETTSCEEEEETTS-SC-EEEECCCSSCEE---------------EEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EE
T ss_pred EcCCCcEEEEECCC-CC-eEEEcCCcccee---------------EEEECCCCCEEEEecCCCcEEEEECCCCeEEE-Ee
Confidence 86 59999999986 33 345555655443 89999999999999999999999999887664 21
Q ss_pred ccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 435 EASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 435 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
. +...|.+++|+|++++|++++. +.+++|+
T Consensus 304 ~--------------------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 304 K--------------------------------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp E--------------------------------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred c--------------------------------------------CCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 1 2367899999999999999888 7899997
No 33
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-39 Score=311.69 Aligned_cols=335 Identities=10% Similarity=0.054 Sum_probs=231.7
Q ss_pred eecccceEEEEECCCC---------CeEEe-------------------ecCCCeEEEEEccCCCCCCCccccccccccc
Q 043890 37 VQEVDIISAIEFDKTG---------DHLAT-------------------GDRGGRVVLFERTDTKDHGGSRRDLERMDYS 88 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~---------~~la~-------------------g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 88 (509)
..+.+.|.+|+|+|++ ++||+ ++.|+.|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 4467788888888876 56666 557889999999876540
Q ss_pred cccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC------CceEEEeeCCCeEEEEeccchhhhhhhccCCC
Q 043890 89 TSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN------GALFLLSTNDKTIKFWKVQEKKVKKIADMNVD 162 (509)
Q Consensus 89 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 162 (509)
......+.+|. +.|.+++| +|+ +.+||+++.||+|++||+.++.........
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~w--sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-- 254 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKW--HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-- 254 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEE--CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC--
T ss_pred ------ceEEEEEEecC------------CcEEEEEE--CCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee--
Confidence 00123355665 67999999 664 679999999999999999765321000000
Q ss_pred CCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC
Q 043890 163 PSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG 242 (509)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 242 (509)
+ ..+... +.+|...|.+++|++++
T Consensus 255 -----------------------------------------------~--------~~p~~~-l~~h~~~v~sv~~s~~~ 278 (524)
T 2j04_B 255 -----------------------------------------------C--------EKPSLT-LSLADSLITTFDFLSPT 278 (524)
T ss_dssp -----------------------------------------------C--------CSCSEE-ECCTTTCEEEEEESSSS
T ss_pred -----------------------------------------------e--------cCceEE-EEcCCCCEEEEEecCCC
Confidence 0 000111 37788999999999864
Q ss_pred CEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEE--EEeCCCCcEEEEEEcCCeEEEEECCCCcccCCce
Q 043890 243 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA 319 (509)
Q Consensus 243 ~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 319 (509)
.|++| .||.|++||++++.... ..+..|...|.++ .|+|++.++|++++.|++|++||+++++. .
T Consensus 279 -~lasgs~DgtV~lWD~~~~~~~~-------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~----~ 346 (524)
T 2j04_B 279 -TVVCGFKNGFVAEFDLTDPEVPS-------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT----T 346 (524)
T ss_dssp -EEEEEETTSEEEEEETTBCSSCS-------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH----H
T ss_pred -eEEEEeCCCEEEEEECCCCCCce-------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc----c
Confidence 78888 99999999999764322 1357899999999 56776437999999999999999998653 2
Q ss_pred eeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccce
Q 043890 320 ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDK 398 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (509)
..+..+.. ...|.+++|+|+++.+++++ |++|++||+++ ..++..+.+|...+.
T Consensus 347 ~~~~~~~~----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~-------------- 401 (524)
T 2j04_B 347 KTTVSRFR----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTIT-------------- 401 (524)
T ss_dssp CEEEEECS----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCEE--------------
T ss_pred cccccccc----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCceE--------------
Confidence 33332210 02478899999999999876 59999999997 677778888887655
Q ss_pred eeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc-----CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccC
Q 043890 399 FECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA-----SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDT 473 (509)
Q Consensus 399 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (509)
+++|+|++++|++|+.|++|++||+..+ .+. .+.. +...++.++|+|++... +.++ ...+..+..
T Consensus 402 -sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~-~~~~~~~~~~~~~v~~v~~sp~g~~~------~~~~-~~~~~~~~~ 471 (524)
T 2j04_B 402 -AIGVSRLHPMVLAGSADGSLIITNAARR-LLH-GIKNSSATQKSLRLWKWDYSIKDDKY------RIDS-SYEVYPLTV 471 (524)
T ss_dssp -EEECCSSCCBCEEEETTTEEECCBSCSS-TTT-CC------CCCCEEEECBCCSSSCEE------EECC-CCCCCC---
T ss_pred -EEEeCCCCCeEEEEECCCEEEEEechHh-hcc-ccccCccceeeeEEEEeccCCCCCeE------EccC-Cceeccccc
Confidence 9999999999999999999999998753 222 2221 11246788999987622 2211 111111111
Q ss_pred CCc----ccccccceEEEEEcCCCc---EEEEEec-CceEEEeC
Q 043890 474 NGN----SFDFTTKLLHLAWHPTEN---SIACAAA-NSLYMYYA 509 (509)
Q Consensus 474 ~~~----~~~~~~~i~~~~~~p~~~---~la~~~~-~~i~v~~~ 509 (509)
.+. ...|...|.+++|+|++. +||+|+. +.|+||+.
T Consensus 472 ~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 472 NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp ----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 121 113578999999999965 9999998 89999973
No 34
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-38 Score=324.82 Aligned_cols=437 Identities=10% Similarity=0.067 Sum_probs=267.0
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe--------eeccCCcch
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT--------EFQSHEPEF 108 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~~ 108 (509)
.+|.+.|++++|+|++++||+|+.||.|+||+....+.. .. ......+..+.++|...+.. .+.-.. .
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-~~-~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~--~ 89 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-IK-LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS--Q 89 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-EE-CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTT--C
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-EE-cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCC--C
Confidence 469999999999999999999999999999998765431 00 11233455566655221111 111111 1
Q ss_pred hhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCC
Q 043890 109 DYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANG 188 (509)
Q Consensus 109 ~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 188 (509)
..+..+.+.+.|++++| +|++++|++|+.||.|++||+.+++.... ... .... .......+......++|+|++
T Consensus 90 ~~~~~~~~~~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~i~--~~~~-~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 90 KVLTTVFVPGKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSF-KLD--NLQK-SSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp SEEEEEECSSCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEE-EEC--CHHH-HHTCSSSCCCCCCEEEEETTE
T ss_pred cEEEEEcCCCCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccc-eec--cccc-cccccccCCCCeEEEEEccCC
Confidence 12334445577888888 88888888888888888888877653210 000 0000 000011233445667777753
Q ss_pred CCCcceecCCCCCCCccccccccccccceeeeee-----------eeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 189 GSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCR-----------RVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
. ..++.+..++.+ +||+............ ......|...|.+++|+|+|++|+++ .||.|++|
T Consensus 164 ~----~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 164 I----GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp E----EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred C----CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 1 234556778889 9998764322110000 00012346789999999999999999 99999999
Q ss_pred EccCCCceeeEeeccCCccC-----------CCccceEEEEEeC----CCCcEEEEEEcC-----CeEEEEECCC-----
Q 043890 257 NLEISNQSFNIVDVKPANME-----------DLTEVITSAEFHP----THCNMLAYSSSK-----GSIRLIDLRQ----- 311 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~l~~~~----~~~~~l~~~~~d-----g~i~vwd~~~----- 311 (509)
|+++++..... .+...... .|...|.+++|++ ++..+|++|+.+ ..+.+|++..
T Consensus 239 d~~~g~~~~~r-~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 239 DANSGHMIMAR-TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp ETTTCCEEEEE-CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred ECCCCcEEEEE-eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99987644310 00000000 2455799999954 432567777665 2677777310
Q ss_pred ----------------Cccc-----------------------------------CCceeeeccccC-------------
Q 043890 312 ----------------SALC-----------------------------------DSHAILFEEQEA------------- 327 (509)
Q Consensus 312 ----------------~~~~-----------------------------------~~~~~~~~~~~~------------- 327 (509)
.+.. ...++.+.....
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l 397 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence 0000 000111111000
Q ss_pred ---------------------------CCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCce--EEEe
Q 043890 328 ---------------------------PGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPV--ATFQ 377 (509)
Q Consensus 328 ---------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~--~~~~ 377 (509)
......+.+|...+.+++|+|++++|++|+ |++|++||+.+. ... ..+.
T Consensus 398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g-~~~~~~~~~ 476 (902)
T 2oaj_A 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHG-DIQDNASFE 476 (902)
T ss_dssp TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCC-TTTTTBCEE
T ss_pred cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCc-cccCCceEE
Confidence 000012334444555566788999999986 699999999863 321 1111
Q ss_pred ---------ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc--------------------
Q 043890 378 ---------VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS-------------------- 428 (509)
Q Consensus 378 ---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------- 428 (509)
+|... |.+++|+||+++||+|+.||+|+||++.+++
T Consensus 477 ~~l~~~~~~~h~~~---------------V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 477 VNLSRTLNKAKELA---------------VDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp EEHHHHTTCSSSCC---------------EEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred eechhhcCCCCCCc---------------eeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence 23322 3499999999999999999999999998662
Q ss_pred -------------------------eeeeeeccCCCceeEEEEcCCCCCCccc---ceeeEeecCCCCCcc--cCCCccc
Q 043890 429 -------------------------TEATTLEASKNPMRRQVQTPSRPSRSLS---SITRVVRRGSDVPGV--DTNGNSF 478 (509)
Q Consensus 429 -------------------------~~~~~~~~~~~~v~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~ 478 (509)
++. ++.+|.++|++++|||++ ....+ +.++.|+........ .+. ...
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~-~~~ 618 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPST-AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIR-EIS 618 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEE-EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGG-GTC
T ss_pred cccCCccccccccccCCCCCCCccceeE-EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehh-Hhc
Confidence 244 788999999999999999 64333 456777633321111 110 011
Q ss_pred -ccccceEEEEEc-----CCC---cEEEEEec-CceEEEe
Q 043890 479 -DFTTKLLHLAWH-----PTE---NSIACAAA-NSLYMYY 508 (509)
Q Consensus 479 -~~~~~i~~~~~~-----p~~---~~la~~~~-~~i~v~~ 508 (509)
.|...|++++|+ ||+ .+|++++. +.+++|+
T Consensus 619 ~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 619 GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 357889999999 885 89999988 8999997
No 35
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.3e-38 Score=298.79 Aligned_cols=245 Identities=21% Similarity=0.342 Sum_probs=212.0
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|.+++|+|++++||+|+.|+.|+|||+.+.+. ...+.+|.
T Consensus 145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-----------------------~~~~~~h~--------- 192 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-----------------------IRTMHGHD--------- 192 (410)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-----------------------EECCCCCS---------
T ss_pred EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----------------------eEEEcCCC---------
Confidence 4457999999999999999999999999999999987766 67788888
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|++++|++++.|++|++||+.++....
T Consensus 193 ---~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~--------------------------------------- 228 (410)
T 1vyh_C 193 ---HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVK--------------------------------------- 228 (410)
T ss_dssp ---SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE---------------------------------------
T ss_pred ---CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------------------------
Confidence 78999999 9999999999999999999998764321
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
. +.+|...|.++.++|++.+|+++ .|+.|++||+++.+...
T Consensus 229 -----------------------------~-~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~-------- 270 (410)
T 1vyh_C 229 -----------------------------T-FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-------- 270 (410)
T ss_dssp -----------------------------E-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------
T ss_pred -----------------------------E-EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee--------
Confidence 1 36788899999999999999999 99999999999876543
Q ss_pred ccCCCccceEEEEEeCCC-------------------CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccc
Q 043890 274 NMEDLTEVITSAEFHPTH-------------------CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFF 334 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~-------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (509)
.+..|...|.+++|+|++ ..+|++|+.|+.|++||++++.. +..+..
T Consensus 271 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----~~~~~~---------- 336 (410)
T 1vyh_C 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVG---------- 336 (410)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEEC----------
T ss_pred EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----EEEEEC----------
Confidence 457799999999999962 16899999999999999998864 344443
Q ss_pred ccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 043890 335 TEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG 413 (509)
Q Consensus 335 ~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 413 (509)
|...|.+++|+|++++|++|+ |+.|++||+.+ .+++..+.+|...+. +++|+|++.+|++|
T Consensus 337 --h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~---------------~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 337 --HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVT---------------SLDFHKTAPYVVTG 398 (410)
T ss_dssp --CSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCEE---------------EEEECSSSSCEEEE
T ss_pred --CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcEE---------------EEEEcCCCCEEEEE
Confidence 457899999999999999986 59999999986 788889988887655 99999999999999
Q ss_pred eCCCcEEEEeCC
Q 043890 414 SYSNLFRVFGCA 425 (509)
Q Consensus 414 ~~dg~i~iw~~~ 425 (509)
+.|+.|++|+++
T Consensus 399 s~D~~i~vW~~r 410 (410)
T 1vyh_C 399 SVDQTVKVWECR 410 (410)
T ss_dssp ETTSEEEEEC--
T ss_pred eCCCcEEEEeCC
Confidence 999999999963
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-37 Score=314.80 Aligned_cols=311 Identities=15% Similarity=0.261 Sum_probs=234.9
Q ss_pred CcceecccceEEEEECCCC-CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 34 GEEVQEVDIISAIEFDKTG-DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~~-~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
+.+.+|.+.|++++|+|++ ++|++|+.|+.|+||++..... ........+.+|.
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~------------------~~~~~~~~~~~h~------- 430 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK------------------AYGVAQRRLTGHS------- 430 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT------------------CSCEEEEEEECCS-------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc------------------ccccccceecCCC-------
Confidence 3456799999999999874 8999999999999999986543 0011245678888
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++| +|++++|++|+.||.|++||+.++....
T Consensus 431 -----~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~------------------------------------- 466 (694)
T 3dm0_A 431 -----HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTR------------------------------------- 466 (694)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred -----CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCccee-------------------------------------
Confidence 78999999 9999999999999999999998764221
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
. +.+|...|.+++|+|++++|+++ .|+.|++||+.... ...+
T Consensus 467 -------------------------------~-~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~---- 509 (694)
T 3dm0_A 467 -------------------------------R-FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTI---- 509 (694)
T ss_dssp -------------------------------E-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEE----
T ss_pred -------------------------------E-EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceee----
Confidence 1 37899999999999999999999 99999999986532 2221
Q ss_pred CCccCCCccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 272 PANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.....+|...|.+++|+|++ ...|++++.|+.|++||+++.+. ...+. +|...|.+++|+|++
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~------------~h~~~v~~v~~spdg 573 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLA------------GHTGYVSTVAVSPDG 573 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEEC------------CCSSCEEEEEECTTS
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEc------------CCCCCEEEEEEeCCC
Confidence 12346789999999999986 25899999999999999998763 33333 455899999999999
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
++|++++ |+.|++||+++ .+.+..+..+. . +.+++|+|++.+|++++ ++.|+|||+.+++.
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~-~---------------v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAE-GKKLYSLEANS-V---------------IHALCFSPNRYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp SEEEEEETTSBCEEEETTT-TEEEECCBCSS-C---------------EEEEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCC-CceEEEecCCC-c---------------EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC
Confidence 9999986 69999999996 55555444322 1 23899999998887665 56699999999988
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+. .+..+.......... .+.. ... .....+++++|+|++++|++|+. +.|+||+
T Consensus 636 ~~-~~~~~~~~~~~~~~~-~~~~-------------------~~~----~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 636 VE-DLKVDLKAEAEKADN-SGPA-------------------ATK----RKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp EE-EECCCCC----------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred hh-hhccccccccccccc-cccc-------------------cCC----ceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 87 666544221100000 0000 000 01134789999999999999988 8899997
Q ss_pred C
Q 043890 509 A 509 (509)
Q Consensus 509 ~ 509 (509)
.
T Consensus 691 i 691 (694)
T 3dm0_A 691 I 691 (694)
T ss_dssp C
T ss_pred c
Confidence 4
No 37
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.7e-37 Score=292.37 Aligned_cols=315 Identities=10% Similarity=0.144 Sum_probs=234.7
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+.|++++|+| ++||+|+.||.|++|++.+.+.. ........+.+|.
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~----------- 62 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK----------- 62 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT-----------
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC-----------
Confidence 45999999999999 89999999999999999987620 0011256677887
Q ss_pred hccceeeEEEEcCC----C---ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCC
Q 043890 117 EEKINKIRWCQTAN----G---ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 117 ~~~v~~l~~~~~~~----~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
..|++++| +++ + ++|++++.||.|++||+.+++....
T Consensus 63 -~~v~~~~~--~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------------------------------- 106 (397)
T 1sq9_A 63 -SGLHHVDV--LQAIERDAFELCLVATTSFSGDLLFYRITREDETKK--------------------------------- 106 (397)
T ss_dssp -TCEEEEEE--EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC---------------------------------
T ss_pred -CcEEEEEE--ecccccCCccccEEEEEcCCCCEEEEEccCCccccc---------------------------------
Confidence 78999999 777 8 9999999999999999987653100
Q ss_pred CCcceecCCCCCCCccccccccccccceeeeeeeeeeccc-----ccCeEEEEEC----CCCCE-EEEE-cCCeEEEEEc
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAH-----DYHINSISNN----SDGET-FISA-DDLRINLWNL 258 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~-~dg~i~iwd~ 258 (509)
...+. +..| ...|.+++|+ |++++ |+++ .||.|++||+
T Consensus 107 ------------------------------~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 107 ------------------------------VIFEK-LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp ------------------------------EEEEE-ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred ------------------------------cccee-ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 00011 2455 5889999999 99999 9999 9999999999
Q ss_pred cC------CCcee-----eEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccC
Q 043890 259 EI------SNQSF-----NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEA 327 (509)
Q Consensus 259 ~~------~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 327 (509)
++ .+... .+.. .......|...|.+++|+|++ +|++++.|+.|++||+++++. +..+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~----~~~~~~~-- 226 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQG-TVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP----LYNFESQ-- 226 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEE-EECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE----EEEEECC--
T ss_pred CccccccccceeeccCcceeee-eeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce----eEEEecc--
Confidence 97 44322 1100 000114578899999999996 999999999999999998763 3444430
Q ss_pred CCCccccccc---cccEEEEEEecCCCEEEEec-C---CeEEEEECCCCCCceEEEee-------------ccccccccc
Q 043890 328 PGSRSFFTEI---IASISDIKFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQV-------------HEYLRPKLC 387 (509)
Q Consensus 328 ~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~ 387 (509)
.+| ...|.+++|+|++++|++++ + +.|++||+++ .+++..+.. |...+
T Consensus 227 -------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v---- 294 (397)
T 1sq9_A 227 -------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV---- 294 (397)
T ss_dssp -------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE----
T ss_pred -------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE----
Confidence 113 47899999999999999975 6 8999999996 677777776 55443
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec------cCCCceeEEEEcCCCCCCcccceeeE
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE------ASKNPMRRQVQTPSRPSRSLSSITRV 461 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~~~~~~~~~ 461 (509)
.+++|+|++++|++++.||.|++||+.+++.+. .+. +|... ...+..
T Consensus 295 -----------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~------~~~g~~--------- 347 (397)
T 1sq9_A 295 -----------MSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT-TLNMHCDDIEIEED------ILAVDE--------- 347 (397)
T ss_dssp -----------EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCGGGCSSGGG------CCCBCT---------
T ss_pred -----------EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE-EEecccCcccchhh------hhcccc---------
Confidence 389999999999999999999999999998887 776 44211 000000
Q ss_pred eecCCCCCcccCCCcccccccceEEEEEcCCC----------cEEEEEec-CceEEEeC
Q 043890 462 VRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTE----------NSIACAAA-NSLYMYYA 509 (509)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----------~~la~~~~-~~i~v~~~ 509 (509)
.. .-.|...|.+++|+|++ ++|++++. +.+++|+.
T Consensus 348 -------~~------~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 348 -------HG------DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp -------TS------CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred -------cc------ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 00 00135789999999998 78888886 89999973
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-36 Score=286.69 Aligned_cols=333 Identities=13% Similarity=0.145 Sum_probs=237.2
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
.|.++|.+++|+|++++||+|+.|+.|++||+.+.+. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 3889999999999999999999999999999987751 1157778888
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|++++| +|++++|++++.||.|++||+.+++....
T Consensus 53 ~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------------------------- 89 (372)
T 1k8k_C 53 GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPT----------------------------------------- 89 (372)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred CcccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeee-----------------------------------------
Confidence 78999999 89999999999999999999976642211
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.....|...|.+++|+|++++|+++ .|+.|++||++......... ....
T Consensus 90 --------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~ 139 (372)
T 1k8k_C 90 --------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKK 139 (372)
T ss_dssp --------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECT
T ss_pred --------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----eeec
Confidence 0125678889999999999999999 89999999999866322111 1235
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccc--cCCCCccccccccccEEEEEEecCCCEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQ--EAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.|...|.+++|+|++ ++|++++.|+.|++||++............... ........+..|...|.+++|+|++++|+
T Consensus 140 ~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred ccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 688999999999998 999999999999999986433110000000000 00011122345668999999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC--Cceee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP--GSTEA 431 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~ 431 (509)
+++ |+.|++||+++ .+++..+..|...+. +++|+|++++|+++ .|+.|++|++.+ ++...
T Consensus 219 ~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~---------------~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 219 WVSHDSTVCLADADK-KMAVATLASETLPLL---------------AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp EEETTTEEEEEEGGG-TTEEEEEECSSCCEE---------------EEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred EEeCCCEEEEEECCC-CceeEEEccCCCCeE---------------EEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 986 59999999996 678888887765543 89999999988877 899999999987 53211
Q ss_pred -eeeccCCCceeEEEEcCCCCCCcccceeeEe---e-cCCCC----CcccCCCcccccccceEEEEEc-CCC---cEEEE
Q 043890 432 -TTLEASKNPMRRQVQTPSRPSRSLSSITRVV---R-RGSDV----PGVDTNGNSFDFTTKLLHLAWH-PTE---NSIAC 498 (509)
Q Consensus 432 -~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~---~-~~~~~----~~~~~~~~~~~~~~~i~~~~~~-p~~---~~la~ 498 (509)
..+..+......- . ...+.+ . .+... ....+. ..|...|++++|+ +++ .+|++
T Consensus 282 ~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~g~~~~~l~s 347 (372)
T 1k8k_C 282 GGRLDVPKQSSQRG-------L----TARERFQNLDKKASSEGSAAAGAGLD---SLHKNSVSQISVLSGGKAKCSQFCT 347 (372)
T ss_dssp CCCCCCC-------------------CHHHHHHHCCCCC---------CCCS---SSSSSCEEEEEEEESTTTSCSEEEE
T ss_pred eeccCccccchhhh-------c----chhhhhhhcccccccccCcccccccc---ccccCCcceeEEecCCCcceeeEEE
Confidence 1222222110000 0 000000 0 00000 001111 1457899999977 555 89999
Q ss_pred Eec-CceEEEe
Q 043890 499 AAA-NSLYMYY 508 (509)
Q Consensus 499 ~~~-~~i~v~~ 508 (509)
++. +.|++|+
T Consensus 348 ~~~Dg~i~~W~ 358 (372)
T 1k8k_C 348 TGMDGGMSIWD 358 (372)
T ss_dssp EETTSEEEEEE
T ss_pred ecCCCceEEEE
Confidence 997 8999997
No 39
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-36 Score=277.96 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=196.9
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
...+.+|. +.|++++| +|++++|++++.||.|++||+.++.....
T Consensus 6 ~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~--------------------- 50 (304)
T 2ynn_A 6 KKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRS--------------------- 50 (304)
T ss_dssp EEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE---------------------
T ss_pred EEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEE---------------------
Confidence 56788888 88999999 99999999999999999999987642211
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
+..|..+|.+++|+|++++|++| .|+.|++|
T Consensus 51 ------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 51 ------------------------------------------------IQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp ------------------------------------------------EECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ------------------------------------------------eeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 36788889999999999999999 99999999
Q ss_pred EccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 257 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
|+++++... .+.+|...|.+++|+|++ .+|++++.|+.|++||++++..+ ...+ .+
T Consensus 83 d~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~~------------~~ 138 (304)
T 2ynn_A 83 NYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQTF------------EG 138 (304)
T ss_dssp ETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEEE------------CC
T ss_pred ECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhhh------------cc
Confidence 999877543 467899999999999998 99999999999999999876421 2233 34
Q ss_pred ccccEEEEEEec-CCCEEEEec-CCeEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeEEEcC--CCCEEE
Q 043890 337 IIASISDIKFAK-DGRHILSRD-YMTLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFECCLSG--DGLRVA 411 (509)
Q Consensus 337 ~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~ 411 (509)
|...|.+++|+| ++.+|++|+ |+.|++||++. ..+...+. .+...+. .+.|+| ++.+|+
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v~---------------~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGVN---------------YVDYYPLPDKPYMI 202 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCEE---------------EEEECCSTTCCEEE
T ss_pred cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcEE---------------EEEEEEcCCCCEEE
Confidence 558899999999 678999986 69999999986 44444443 3333322 677765 788999
Q ss_pred EeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcC
Q 043890 412 TGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHP 491 (509)
Q Consensus 412 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 491 (509)
+++.|+.|++||+.+++++. .+.+|. ..|.+++|+|
T Consensus 203 s~s~D~~i~iWd~~~~~~~~-~~~~h~-------------------------------------------~~v~~~~~~p 238 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSCVA-TLEGHM-------------------------------------------SNVSFAVFHP 238 (304)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECCS-------------------------------------------SCEEEEEECS
T ss_pred EEcCCCeEEEEeCCCCccce-eeCCCC-------------------------------------------CCEEEEEECC
Confidence 99999999999999999887 888776 4466667777
Q ss_pred CCcEEEEEec-CceEEEe
Q 043890 492 TENSIACAAA-NSLYMYY 508 (509)
Q Consensus 492 ~~~~la~~~~-~~i~v~~ 508 (509)
++++|++++. +.+++|+
T Consensus 239 ~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp SSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEE
Confidence 7777777666 6677776
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.5e-37 Score=278.44 Aligned_cols=254 Identities=15% Similarity=0.241 Sum_probs=198.1
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+.|.+++|+|+|++||+|+.|+.|+|||+..... .....+.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~----------- 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE----------- 53 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS-----------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc-----------
Confidence 46999999999999999999999999999999975321 0146788998
Q ss_pred hccceeeEEEEcC--CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 117 EEKINKIRWCQTA--NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 117 ~~~v~~l~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|.+++| ++ ++++|++++.|++|++||+.+++....
T Consensus 54 -~~V~~v~~--s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~-------------------------------------- 92 (297)
T 2pm7_B 54 -GPVWRVDW--AHPKFGTILASCSYDGKVMIWKEENGRWSQI-------------------------------------- 92 (297)
T ss_dssp -SCEEEEEE--CCGGGCSEEEEEETTTEEEEEEBSSSCBCCC--------------------------------------
T ss_pred -CCeEEEEe--cCCCcCCEEEEEcCCCEEEEEEcCCCceEEE--------------------------------------
Confidence 88999999 65 488999999999999999986531110
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
.. +.+|...|.+++|+|+ +.+|+++ .|+.|++||+++.....
T Consensus 93 ----------------------------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------ 137 (297)
T 2pm7_B 93 ----------------------------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------ 137 (297)
T ss_dssp ----------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC------
T ss_pred ----------------------------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee------
Confidence 01 2678889999999997 8899999 99999999998754221
Q ss_pred CCccCCCccceEEEEEeCCC------------CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 272 PANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
...+.+|...|.+++|+|++ .++|++|+.|+.|++||++++......... +.+|..
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~------------l~~H~~ 205 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST------------LEGHSD 205 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE------------ECCCSS
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE------------ecCCCC
Confidence 12456799999999999972 269999999999999999876521111222 345668
Q ss_pred cEEEEEEecCC---CEEEEec-CCeEEEEECCCCCCce--EEE--eecccccccccccccCCCccceeeEEEcCCCCEEE
Q 043890 340 SISDIKFAKDG---RHILSRD-YMTLKLWDINMDSGPV--ATF--QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA 411 (509)
Q Consensus 340 ~i~~~~~s~~~---~~l~s~~-~~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 411 (509)
.|.+++|+|++ .+|++++ |++|+|||++...... ..+ ..|... |.+++|+|++++||
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~la 270 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLA 270 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEE
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEECCCCCEEE
Confidence 99999999985 7899886 6999999998632221 122 122222 33899999999999
Q ss_pred EeeCCCcEEEEeCC
Q 043890 412 TGSYSNLFRVFGCA 425 (509)
Q Consensus 412 ~~~~dg~i~iw~~~ 425 (509)
+++.|+.|+||+..
T Consensus 271 s~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 271 LSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EEcCCCcEEEEEEC
Confidence 99999999999976
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-36 Score=281.35 Aligned_cols=245 Identities=20% Similarity=0.363 Sum_probs=206.7
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|...|.+++|+|++++||+|+.|+.|++|++.+.+. .......+.+|.
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-------------------~~~~~~~~~~h~----------- 143 (340)
T 1got_B 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-------------------NVRVSRELAGHT----------- 143 (340)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-------------------SCEEEEEEECCS-----------
T ss_pred ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-------------------cceeEEEecCCC-----------
Confidence 45889999999999999999999999999999986543 112356678888
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
+.|.++.| ++++ .+++++.|+.|++||+.+++...
T Consensus 144 -~~v~~~~~--~~~~-~l~s~s~d~~i~~wd~~~~~~~~----------------------------------------- 178 (340)
T 1got_B 144 -GYLSCCRF--LDDN-QIVTSSGDTTCALWDIETGQQTT----------------------------------------- 178 (340)
T ss_dssp -SCEEEEEE--EETT-EEEEEETTSCEEEEETTTTEEEE-----------------------------------------
T ss_pred -ccEEEEEE--CCCC-cEEEEECCCcEEEEECCCCcEEE-----------------------------------------
Confidence 78999999 6666 58999999999999998765321
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
. +.+|...|.+++|+|++++|+++ .|+.|++||++++.... .+
T Consensus 179 ---------------------------~-~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~--------~~ 222 (340)
T 1got_B 179 ---------------------------T-FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ--------TF 222 (340)
T ss_dssp ---------------------------E-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--------EE
T ss_pred ---------------------------E-EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE--------EE
Confidence 1 36788999999999999999999 99999999999876442 46
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
.+|...|.+++|+|++ ++|++++.|+.|++||++.++. +..+... .+...|.+++|+|+|++|++
T Consensus 223 ~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~----------~~~~~v~~~~~s~~g~~l~~ 287 (340)
T 1got_B 223 TGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE----LMTYSHD----------NIICGITSVSFSKSGRLLLA 287 (340)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCT----------TCCSCEEEEEECTTSSEEEE
T ss_pred cCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE----EEEEccC----------CcccceEEEEECCCCCEEEE
Confidence 7899999999999998 9999999999999999998763 2333211 12247999999999999999
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
|+ |+.|++||+.+ ...+..+.+|...+. +++|+|++++|++|+.|+.|+|||
T Consensus 288 g~~d~~i~vwd~~~-~~~~~~~~~h~~~v~---------------~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 288 GYDDFNCNVWDALK-ADRAGVLAGHDNRVS---------------CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTSEEEEEETTT-CCEEEEEECCSSCEE---------------EEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCeEEEEEccc-CcEeeEeecCCCcEE---------------EEEEcCCCCEEEEEcCCccEEecC
Confidence 86 59999999986 678888888887655 999999999999999999999997
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-36 Score=280.54 Aligned_cols=266 Identities=16% Similarity=0.261 Sum_probs=211.1
Q ss_pred eeEEeecc---ccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcce
Q 043890 20 LEWKFSQV---FGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFR 96 (509)
Q Consensus 20 ~~~~~~~~---~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (509)
..|++... ++. ....+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.
T Consensus 43 ~~W~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~---------------------- 99 (319)
T 3frx_A 43 ISWKLTGDDQKFGV-PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET---------------------- 99 (319)
T ss_dssp EEEEEEEETTEEEE-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------
T ss_pred EEecCCCCCccccc-cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe----------------------
Confidence 45877532 111 1234567999999999999999999999999999999998876
Q ss_pred EEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCC
Q 043890 97 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSS 176 (509)
Q Consensus 97 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (509)
...+.+|. ..|.+++| +|++++|++++.|+.|++||+.....
T Consensus 100 -~~~~~~h~------------~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~~----------------------- 141 (319)
T 3frx_A 100 -YQRFVGHK------------SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQCL----------------------- 141 (319)
T ss_dssp -EEEEECCS------------SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCEE-----------------------
T ss_pred -eEEEccCC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeE-----------------------
Confidence 67888998 78999999 99999999999999999999863211
Q ss_pred CCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC------CCEEEEE-c
Q 043890 177 NNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD------GETFISA-D 249 (509)
Q Consensus 177 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~-~ 249 (509)
.. +.+|...|.++.+.|. +..++++ .
T Consensus 142 ----------------------------------------------~~-~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 142 ----------------------------------------------AT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp ----------------------------------------------EE-ECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred ----------------------------------------------EE-EeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 11 3678889999999885 4478888 9
Q ss_pred CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCC
Q 043890 250 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPG 329 (509)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 329 (509)
|+.|++||+++.+... .+.+|...|.+++|+|++ ++|++++.|+.|++||+++++. +..+..+
T Consensus 175 d~~i~~wd~~~~~~~~--------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---- 237 (319)
T 3frx_A 175 DKMVKAWNLNQFQIEA--------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA----MYTLSAQ---- 237 (319)
T ss_dssp TSCEEEEETTTTEEEE--------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECC----
T ss_pred CCEEEEEECCcchhhe--------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecCC----
Confidence 9999999998765332 467899999999999998 9999999999999999998764 3444432
Q ss_pred CccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCE
Q 043890 330 SRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR 409 (509)
Q Consensus 330 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 409 (509)
..|.+++|+|++.+|+++.++.+++|++.. ...+..+..+..... ...-..+.+++|+|||++
T Consensus 238 ---------~~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 238 ---------DEVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp ---------SCEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSE
T ss_pred ---------CcEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCE
Confidence 479999999999999999888899999985 444444433211100 000011348999999999
Q ss_pred EEEeeCCCcEEEEeCCCC
Q 043890 410 VATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~~ 427 (509)
|++|+.||.|+|||+.++
T Consensus 301 l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTSCEEEEEEEEC
T ss_pred EEEeecCceEEEEEEeec
Confidence 999999999999998764
No 43
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-36 Score=285.49 Aligned_cols=303 Identities=15% Similarity=0.169 Sum_probs=227.1
Q ss_pred ecccceEEEEECCC----CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 38 QEVDIISAIEFDKT----GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 38 ~h~~~I~~v~~s~~----~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
+|.+.|.+++|+|+ ..++++++.++.|++||+.+++. ...+..|..
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------------------~~~~~~~~~------- 65 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------------------IRLLQSYVD------- 65 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------------------EEEEEEEEC-------
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------------------EEeeeeccc-------
Confidence 59999999999984 45566666677999999987765 333333320
Q ss_pred hhhhccceeeEEEEcCC----CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCC
Q 043890 114 LEIEEKINKIRWCQTAN----GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
..+...|++++| +|+ +++|++++.||.|++||+.+++...
T Consensus 66 ~~~~~~v~~~~~--~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---------------------------------- 109 (366)
T 3k26_A 66 ADADENFYTCAW--TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---------------------------------- 109 (366)
T ss_dssp SCTTCCEEEEEE--EECTTTCCEEEEEEETTCEEEEECTTTCCEEE----------------------------------
T ss_pred cCCCCcEEEEEe--ccCCCCCCCEEEEecCCCEEEEEEchhceEee----------------------------------
Confidence 012277999999 556 6799999999999999998764321
Q ss_pred CCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeE
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~ 267 (509)
. +.+|...|.+++|+| ++++|+++ .||.|++||+++++....+
T Consensus 110 ----------------------------------~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 110 ----------------------------------H-YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp ----------------------------------E-EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ----------------------------------e-ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence 1 367889999999999 89999999 8999999999987654322
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccc----------------cCCCCc
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQ----------------EAPGSR 331 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------------~~~~~~ 331 (509)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.. ..+... ......
T Consensus 155 -----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 155 -----GGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMM----NAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp -----CSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHH----HHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred -----cccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccc----cccceeEEecCCCCcccccceeeccCcc
Confidence 1336799999999999998 99999999999999999987531 111110 000011
Q ss_pred cccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCC-------------ceEEEeecccccccccccccCCCccc
Q 043890 332 SFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSG-------------PVATFQVHEYLRPKLCDLYENDSIFD 397 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
.....|...|.+++|+ +++|++++ ++.|++||+.+... .+..+..|...+.
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------- 289 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW------------- 289 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS-------------
T ss_pred ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE-------------
Confidence 1233477899999999 67888876 59999999986332 1444444544433
Q ss_pred eeeEEEcCC--CCEEEEeeCCCcEEEEeCCCCceee---eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCccc
Q 043890 398 KFECCLSGD--GLRVATGSYSNLFRVFGCAPGSTEA---TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVD 472 (509)
Q Consensus 398 v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (509)
+++|+|+ +++|++++.||.|++||+.+++... ..+.+|.
T Consensus 290 --~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------------------------- 333 (366)
T 3k26_A 290 --YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK---------------------------------- 333 (366)
T ss_dssp --CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT----------------------------------
T ss_pred --EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc----------------------------------
Confidence 8899999 9999999999999999999876432 1222221
Q ss_pred CCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 473 TNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 473 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
+...|++++|+|++++|++++. +.+++|+.
T Consensus 334 -------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 334 -------CGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 1477999999999999999988 79999984
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-36 Score=292.01 Aligned_cols=331 Identities=12% Similarity=0.179 Sum_probs=243.2
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
+.+++++|+|++++|++|+.||.|++||+.+.+. ...+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-----------------------~~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-----------------------SKMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET-----------------------TTTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce-----------------------eeEEecCC-------------ce
Confidence 4456899999999999999999999999987665 22233332 23
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
....| ++++++|++++.||.|++||+.+++....
T Consensus 101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 134 (420)
T 3vl1_A 101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------------------------------- 134 (420)
T ss_dssp EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence 34456 89999999999999999999886542211
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 279 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++... .+.+|.
T Consensus 135 -------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------~~~~h~ 181 (420)
T 3vl1_A 135 -------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--------TLIGHR 181 (420)
T ss_dssp -------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE--------EEECCS
T ss_pred -------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce--------EEcCCC
Confidence 26788999999999999999999 99999999999876543 456799
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCC------------ccccccccccEEEEEEe
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGS------------RSFFTEIIASISDIKFA 347 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~s 347 (509)
..|.+++|+|++ ++|++++.|+.|++||+++++. +..+..+..... ......+...+.+++|+
T Consensus 182 ~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 182 ATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTT----IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp SCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred CcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCce----eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 999999999998 9999999999999999998864 344443211000 00112233556667778
Q ss_pred cCCCEEEEec-CCeEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCCCcEEEEeC
Q 043890 348 KDGRHILSRD-YMTLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYSNLFRVFGC 424 (509)
Q Consensus 348 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 424 (509)
|++++|++++ ++.|++||+++ .+.+..+. .|...+. +++|+|+++ +|++++.||.|++||+
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~---------------~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCSCN---------------SLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSCEE---------------EEEECSSCTTEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCCce---------------eEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 9999999986 59999999997 45554443 3444433 899999999 9999999999999999
Q ss_pred CCCce-eeeeecc-CCCceeEEEEcCCCCCCc---ccceeeEeecCCCCCc---ccCCCc--ccccccceEEEEEcCCCc
Q 043890 425 APGST-EATTLEA-SKNPMRRQVQTPSRPSRS---LSSITRVVRRGSDVPG---VDTNGN--SFDFTTKLLHLAWHPTEN 494 (509)
Q Consensus 425 ~~~~~-~~~~~~~-~~~~v~~~~~s~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~i~~~~~~p~~~ 494 (509)
.+++. +. .+.. |..++..+.+. ++.... ..+..+.|+....... ...... ...+...|.+++|+|++.
T Consensus 321 ~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 321 RSPECPVG-EFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp TCTTSCSE-EEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred CCCcCchh-hhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 98765 44 6766 66778887554 443322 2245667763331111 111111 124567899999999999
Q ss_pred ----EEEEEecCceEEEeC
Q 043890 495 ----SIACAAANSLYMYYA 509 (509)
Q Consensus 495 ----~la~~~~~~i~v~~~ 509 (509)
++++|+.+.+.+|+.
T Consensus 399 ~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 399 SNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp SSCEEEEEETTTEEEEEES
T ss_pred CcceEEEEcCCceEEEEec
Confidence 777777799999974
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-36 Score=284.14 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=194.6
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
...+|.+.|.+++|+|++++| +++.||.|+|||+.+++.... ......+|.
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~-------------------~~~~~~~h~--------- 139 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLV-------------------NKFAKYEHD--------- 139 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CC-------------------CCEEECCCS---------
T ss_pred ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEE-------------------EeeccCCCC---------
Confidence 345799999999999998755 566799999999987765100 012344676
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|++++| +|++++|++++.|+.|++||+.+++....
T Consensus 140 ---~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~~~-------------------------------------- 176 (357)
T 4g56_B 140 ---DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVLKS-------------------------------------- 176 (357)
T ss_dssp ---SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEEEE--------------------------------------
T ss_pred ---CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEE--------------------------------------
Confidence 78999999 99999999999999999999987653221
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
+.+|...|++++|++++. +++++ .|+.|++||+++++....
T Consensus 177 -------------------------------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------ 219 (357)
T 4g56_B 177 -------------------------------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR------ 219 (357)
T ss_dssp -------------------------------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB------
T ss_pred -------------------------------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee------
Confidence 377889999999999875 67777 899999999998765432
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC-C
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-R 351 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~ 351 (509)
.....+...+.+++|+|++..+|++|+.|+.|++||+++++. ++.+.. |...|.+++|+|++ +
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~~~------------~~~~v~~l~~sp~~~~ 283 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTSAV------------HSQNITGLAYSYHSSP 283 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEECC------------CSSCEEEEEECSSSSC
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEEec------------cceeEEEEEEcCCCCC
Confidence 244567788999999998768999999999999999998764 344443 34789999999987 5
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCce
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+|++|+ |+.|+|||+++ ++++.. .+|...+. +++|+| ++++|++++.||+|++|++.+...
T Consensus 284 ~lasgs~D~~i~iwd~~~-~~~~~~-~~H~~~V~---------------~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 284 FLASISEDCTVAVLDADF-SEVFRD-LSHRDFVT---------------GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CEEEEETTSCEEEECTTS-CEEEEE-CCCSSCEE---------------EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEEeCCCEEEEEECCC-CcEeEE-CCCCCCEE---------------EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 788876 59999999986 454443 46766544 999998 899999999999999999975433
No 46
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=272.72 Aligned_cols=278 Identities=15% Similarity=0.168 Sum_probs=224.9
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|++++| |++++||+|+.||.|++||+.+.+. ...+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-----------------------GTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------------EEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------------EEEeecCC----------
Confidence 3469999999999 9999999999999999999987665 56677777
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.+++| +|++++|++++.||.|++|++........
T Consensus 60 --~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--------------------------------------- 96 (313)
T 3odt_A 60 --GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGEDP--------------------------------------- 96 (313)
T ss_dssp --SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTSCC---------------------------------------
T ss_pred --ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCCCc---------------------------------------
Confidence 78999999 89999999999999999999876431110
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
... +.+|...|.+++| ++++|+++ .||.|++|| ..+.. ..
T Consensus 97 --------------------------~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~--------~~ 137 (313)
T 3odt_A 97 --------------------------LYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV--------YN 137 (313)
T ss_dssp ---------------------------CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE--------EE
T ss_pred --------------------------ccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE--------Ee
Confidence 001 3678889999999 67789998 999999999 22322 24
Q ss_pred cCCCccceEEEEEeC-CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 275 MEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
+..|...+.++.|.| ++ +++++++.|+.|++||.... ...+... |...+.+++|+|++. +
T Consensus 138 ~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~~-----------~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFSGI-----------HNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp EECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEECSS-----------CSSCEEEEEEEETTE-E
T ss_pred cccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEecc-----------CcccEEEEEEcCCCe-E
Confidence 567899999999998 65 89999999999999994322 2333321 347899999999999 5
Q ss_pred EEe-cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee
Q 043890 354 LSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 354 ~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 432 (509)
+++ .++.|++||+++ .+++..+..|...+. +++|+|++ .|++++.||.|++||+.+++.+.
T Consensus 199 ~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~---------------~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~- 260 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHT-GDVLRTYEGHESFVY---------------CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ- 260 (313)
T ss_dssp EEEETTSEEEEEETTT-CCEEEEEECCSSCEE---------------EEEECTTS-CEEEEETTSEEEEECTTTCCEEE-
T ss_pred EEccCCCeEEEEECCc-hhhhhhhhcCCceEE---------------EEEEecCC-CEEEEecCCEEEEEECCCCceeE-
Confidence 555 569999999997 688888888876654 89999999 58899999999999999998877
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
.+..|. ..|.+++|+|++++++.+.++.+++|+.
T Consensus 261 ~~~~~~-------------------------------------------~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 261 VITLPA-------------------------------------------ISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEECSS-------------------------------------------SCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred EEeccC-------------------------------------------ceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 666554 5688899999998776666689999973
No 47
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=282.00 Aligned_cols=305 Identities=11% Similarity=0.164 Sum_probs=219.4
Q ss_pred eecccceEEEEECCCCC-eEEeecC---CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 37 VQEVDIISAIEFDKTGD-HLATGDR---GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~-~la~g~~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.+|.+.|.+++|+|+++ ++++|+. ||.|+|||+.+++. ......+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----------------------~~~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----------------------KLLREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----------------------EEEEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----------------------cceeeeccc-------
Confidence 45999999999999985 5567766 89999999997765 012223565
Q ss_pred chhhhccceeeEEEEcCC---CceEEEeeCCCeEEEEeccchh-hhhhhccCCCCCcccCCCCcccCCCCccCCccccCC
Q 043890 113 SLEIEEKINKIRWCQTAN---GALFLLSTNDKTIKFWKVQEKK-VKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANG 188 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 188 (509)
..|.+++| +|+ +++|++++.||.|++||+.+++ ...
T Consensus 66 -----~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------- 105 (357)
T 3i2n_A 66 -----KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEMPVY--------------------------------- 105 (357)
T ss_dssp -----SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---------------------------------
T ss_pred -----CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCccEE---------------------------------
Confidence 78999999 888 6999999999999999998764 111
Q ss_pred CCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEE------ECCCCCEEEEE-cCCeEEEEEccCC
Q 043890 189 GSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSIS------NNSDGETFISA-DDLRINLWNLEIS 261 (509)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~~~~~~~l~~~-~dg~i~iwd~~~~ 261 (509)
. +.+|...|.+++ |+|++++|+++ .||.|++||+++.
T Consensus 106 -----------------------------------~-~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 106 -----------------------------------S-VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp -----------------------------------E-ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred -----------------------------------E-EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 1 367888899995 57899999999 9999999999987
Q ss_pred CceeeEeeccCCccCC-CccceEEEE----EeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 262 NQSFNIVDVKPANMED-LTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 262 ~~~~~~~~~~~~~~~~-~~~~i~~l~----~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
+.....+ ....+ +...+.+++ |+|++ ++|++++.|+.|++||+++++. .... .
T Consensus 150 ~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-----~~~~------------~ 207 (357)
T 3i2n_A 150 DDPVANM----EPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMAL-----RWET------------N 207 (357)
T ss_dssp SSCSEEE----CCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEE-----EEEE------------E
T ss_pred CCcceec----cccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCce-----eeec------------C
Confidence 6333221 01111 244888888 67887 9999999999999999998763 1111 2
Q ss_pred ccccEEEEEEec---CCCEEEEec-CCeEEEEECCCCCCceEEEe-----ecccccccccccccCCCccceeeEEEcCCC
Q 043890 337 IIASISDIKFAK---DGRHILSRD-YMTLKLWDINMDSGPVATFQ-----VHEYLRPKLCDLYENDSIFDKFECCLSGDG 407 (509)
Q Consensus 337 ~~~~i~~~~~s~---~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 407 (509)
|...|.+++|+| ++.+|++++ ++.|++||+++ .++...+. .|...+. +++|+|++
T Consensus 208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~---------------~~~~~~~~ 271 (357)
T 3i2n_A 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVW---------------QVRHLPQN 271 (357)
T ss_dssp CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEE---------------EEEEETTE
T ss_pred CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEE---------------EEEECCCC
Confidence 336899999999 899999986 59999999986 44444433 5555433 89999999
Q ss_pred C-EEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEE
Q 043890 408 L-RVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLH 486 (509)
Q Consensus 408 ~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 486 (509)
+ +|++++.||.|++||+.++.... ...... ......+.... ...+ ..|...|.+
T Consensus 272 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~g------------~~~~~~~~~~~--------~~~~----~~~~~~v~~ 326 (357)
T 3i2n_A 272 RELFLTAGGAGGLHLWKYEYPIQRS-KKDSEG------------IEMGVAGSVSL--------LQNV----TLSTQPISS 326 (357)
T ss_dssp EEEEEEEETTSEEEEEEEECCSCC---CCTTS------------CCCCCCCEEEE--------EEEE----ECCSSCEEE
T ss_pred CcEEEEEeCCCcEEEeecCCCcccc-cccCCC------------Cccccccccce--------eecc----ccCCCCeeE
Confidence 8 89999999999999998765443 211111 00000000000 0001 124678999
Q ss_pred EEEcCCCcEEE-EEec-CceEEEeC
Q 043890 487 LAWHPTENSIA-CAAA-NSLYMYYA 509 (509)
Q Consensus 487 ~~~~p~~~~la-~~~~-~~i~v~~~ 509 (509)
++|+|++++|+ +++. +.++||+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEcCCCCeEEEEecCCCcEEEEEC
Confidence 99999999998 5765 89999973
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=288.69 Aligned_cols=344 Identities=13% Similarity=0.122 Sum_probs=237.7
Q ss_pred eecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 37 VQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.+|.+.|++++|+| ++++||+|+.||.|+|||+.+.+.. ...+ ....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~----------------~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-EVYS----------------SSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-CCCS----------------CSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-cccc----------------eeeec-cCC----------
Confidence 45899999999999 9999999999999999999862210 0000 01111 355
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEecc---chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQ---EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|++++| +|++++|++++.||.|++||+. +++.......
T Consensus 112 --~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------------------------------- 154 (437)
T 3gre_A 112 --STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC--------------------------------- 154 (437)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE---------------------------------
T ss_pred --CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeecccc---------------------------------
Confidence 78999999 8999999999999999999996 3332211100
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeee-ecc--cccCeEEEE--ECCCCCEEEEE-cCCeEEEEEccCCCceee
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVY-AHA--HDYHINSIS--NNSDGETFISA-DDLRINLWNLEISNQSFN 266 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~~i~--~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~ 266 (509)
.+.+.+ +.. +...+.++. +++++++|+++ .|+.|++||+++++....
T Consensus 155 ---------------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 155 ---------------------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp ---------------------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ---------------------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 011111 112 556677777 67899999999 999999999998775543
Q ss_pred EeeccCCccCC--CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 267 IVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 267 ~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
+.. |...|++++|+|++ ++|++++.||.|++||+++++. +..+.. .|...|.++
T Consensus 208 --------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~-----------~~~~~v~~~ 263 (437)
T 3gre_A 208 --------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVL----IRSWSF-----------GDHAPITHV 263 (437)
T ss_dssp --------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEEBC-----------TTCEEEEEE
T ss_pred --------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccE----EEEEec-----------CCCCceEEE
Confidence 333 88999999999998 9999999999999999998763 344431 123689999
Q ss_pred EEec----CCCEEEEec-CCeEEEEECCCCCCceEEEeeccccccccccc-----------ccCCCccceeeEEEcCCCC
Q 043890 345 KFAK----DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDL-----------YENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 345 ~~s~----~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~~~~ 408 (509)
+|+| ++.+|++++ |+.|++||+++ .+.+..+..|...+....-. ........|.+++|+ +++
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 6664 677999986 59999999996 67788888775443321100 000012224589999 789
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE---EEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceE
Q 043890 409 RVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR---QVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLL 485 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 485 (509)
+|++|+.|+.|++||+.+++.+. .+.+|...... ..+++.... ....+........ .....|...|+
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~h~~~I~ 411 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSK-AVISPSRFSDVFIPTQVTANLTM-----LLRKMKRTSTHSV----DDSLYHHDIIN 411 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCE-EEECC--CCCEEEEEEEETTEEE-----EEEECC-----------------CCCEE
T ss_pred EEEecCCCCeEEEEECCCcccce-EEecccccCceEEEEEeecceEE-----EEEeccccccccc----Cccccccccee
Confidence 99999999999999999999887 88887544332 233222111 0111000000000 00113678999
Q ss_pred EEEEcCC--CcEEEEEec-CceEEEe
Q 043890 486 HLAWHPT--ENSIACAAA-NSLYMYY 508 (509)
Q Consensus 486 ~~~~~p~--~~~la~~~~-~~i~v~~ 508 (509)
+++|+++ +.+|++|+. +.|+||+
T Consensus 412 ~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 412 SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999999 788998888 8999995
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-36 Score=278.07 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=201.8
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+.|.+++|+|++++||+|+.|+.++||++..... .....+.+|.
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~---------------------~~~~~~~~h~----------- 105 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF---------------------ECVTTLEGHE----------- 105 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E---------------------EEEEEECCCS-----------
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe---------------------EEEEEccCCC-----------
Confidence 36999999999999999999999999999999876542 1256788898
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.+++| +|++++|++++.|+.|++||+.++...
T Consensus 106 -~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~------------------------------------------ 140 (345)
T 3fm0_A 106 -NEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEY------------------------------------------ 140 (345)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCE------------------------------------------
T ss_pred -CCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCe------------------------------------------
Confidence 78999999 999999999999999999999765311
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
.+... +.+|...|.+++|+|++++|+++ .|+.|++||.++.+.... ..+
T Consensus 141 -----------------------~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~------~~~ 190 (345)
T 3fm0_A 141 -----------------------ECVSV-LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC------ATL 190 (345)
T ss_dssp -----------------------EEEEE-ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE------EEE
T ss_pred -----------------------EEEEE-ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE------EEe
Confidence 11112 37788999999999999999999 999999999987543211 256
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc-cccccEEEEEEecCCCEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT-EIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~ 354 (509)
.+|...|.+++|+|++ ++|++++.|+.|++||+........ +..............+. .|...|.+++|+|++..|+
T Consensus 191 ~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 191 EGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQG-VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA 268 (345)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTC-CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCcc-ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence 7899999999999998 9999999999999999754321100 00000000000001112 2667899999999999999
Q ss_pred Eec-CCeEEEEECCCCCC---ceEEE-----eecccccccccccccCCCccceeeEEEcCCC-CEEEEeeCCCcEEEEeC
Q 043890 355 SRD-YMTLKLWDINMDSG---PVATF-----QVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LRVATGSYSNLFRVFGC 424 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~ 424 (509)
+++ |+.|++|+...... +...+ .+|... |.+++|+|++ .+||+|+.||.|++|++
T Consensus 269 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~---------------V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 269 TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD---------------VNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC---------------EEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc---------------EeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 975 69999999875321 11111 234433 3399999998 59999999999999999
Q ss_pred CCCceee
Q 043890 425 APGSTEA 431 (509)
Q Consensus 425 ~~~~~~~ 431 (509)
.+++.+.
T Consensus 334 ~~~~~~~ 340 (345)
T 3fm0_A 334 QRPEGLH 340 (345)
T ss_dssp CC-----
T ss_pred cCCCCcc
Confidence 9877654
No 50
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.4e-36 Score=277.99 Aligned_cols=255 Identities=15% Similarity=0.174 Sum_probs=196.7
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|++++|+|+|++||+|+.|+.|+|||+.++.. .....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC----------
Confidence 346999999999999999999999999999999986542 1246788998
Q ss_pred hhccceeeEEEEcC--CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 116 IEEKINKIRWCQTA--NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 116 ~~~~v~~l~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|.+++| ++ ++++|++++.|++|++||+.++.....
T Consensus 58 --~~V~~v~~--~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------- 96 (316)
T 3bg1_A 58 --GPVWQVAW--AHPMYGNILASCSYDRKVIIWREENGTWEKS------------------------------------- 96 (316)
T ss_dssp --SCEEEEEE--CCGGGSSCEEEEETTSCEEEECCSSSCCCEE-------------------------------------
T ss_pred --ccEEEEEe--CCCCCCCEEEEEECCCEEEEEECCCCcceEE-------------------------------------
Confidence 88999999 65 488999999999999999976531110
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
.. +.+|...|.+++|+|+ +.+|+++ .|+.|++||++.......
T Consensus 97 -----------------------------~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~---- 142 (316)
T 3bg1_A 97 -----------------------------HE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV---- 142 (316)
T ss_dssp -----------------------------EE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE----
T ss_pred -----------------------------EE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce----
Confidence 11 3678899999999998 7899999 999999999987532211
Q ss_pred cCCccCCCccceEEEEEeCCC----------------CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccc
Q 043890 271 KPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFF 334 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (509)
...+..|...|.+++|+|+. .++|++++.|+.|++||++.... ...... +
T Consensus 143 -~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~------------l 208 (316)
T 3bg1_A 143 -KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQK------------L 208 (316)
T ss_dssp -CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEEC------------C
T ss_pred -eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeee------------c
Confidence 12567789999999999972 16899999999999999975421 001222 3
Q ss_pred ccccccEEEEEEecCC----CEEEEec-CCeEEEEECCCCC---CceEEEeecccccccccccccCCCccceeeEEEcCC
Q 043890 335 TEIIASISDIKFAKDG----RHILSRD-YMTLKLWDINMDS---GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGD 406 (509)
Q Consensus 335 ~~~~~~i~~~~~s~~~----~~l~s~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 406 (509)
.+|...|.+++|+|++ .+|++++ |++|+|||+.... .....+..|...+ .+++|+|+
T Consensus 209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~ 273 (316)
T 3bg1_A 209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSIT 273 (316)
T ss_dssp BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTT
T ss_pred ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCC
Confidence 4566899999999986 7899986 6999999997521 1223444454443 39999999
Q ss_pred CCEEEEeeCCCcEEEEeCC
Q 043890 407 GLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 407 ~~~l~~~~~dg~i~iw~~~ 425 (509)
+++||+++.|+.|+||+..
T Consensus 274 g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCEEEEESSSCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEEC
Confidence 9999999999999999976
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.8e-35 Score=278.16 Aligned_cols=299 Identities=15% Similarity=0.218 Sum_probs=212.2
Q ss_pred ceecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 36 EVQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
+.+|.+.|++++|+| ++++||+|+.||.|++||+.+.+.... ..... .. ........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~--~~-------~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-YTCKA--VC-------SIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-EEECE--EE-------EECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-Eeccc--cc-------cccccccccCC---------
Confidence 345999999999999 999999999999999999998765111 00000 00 00000112455
Q ss_pred hhhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.+++| +| ++++|++++.||.|++||+.+++....
T Consensus 100 ---~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------------- 137 (408)
T 4a11_B 100 ---YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADV------------------------------------- 137 (408)
T ss_dssp ---SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEE-------------------------------------
T ss_pred ---CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCcccee-------------------------------------
Confidence 78999999 88 778999999999999999987653221
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC---CCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
..+...+.++.+++. +.+++++ .|+.|++||+++++...
T Consensus 138 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~---- 180 (408)
T 4a11_B 138 ---------------------------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH---- 180 (408)
T ss_dssp ---------------------------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE----
T ss_pred ---------------------------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee----
Confidence 235566888888874 4589999 99999999999876443
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc---CCCCccccccccccEEEEEE
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE---APGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 346 (509)
.+..|...|.+++|+|++..+|++++.||.|++||++....+ ...+..+. ..........|...|.+++|
T Consensus 181 ----~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 181 ----ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp ----EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred ----eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccccCceeEEEE
Confidence 456799999999999998447999999999999999987632 23332221 12223334678889999999
Q ss_pred ecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 347 AKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 347 s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+|++++|++++ |+.|++||+.+ .+....+..+..... .... ........+..+++++.|+.|++||+.
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~ 322 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS-------KKGL---KFTVSCGCSSEFVFVPYGSTIAVYTVY 322 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC-------SSCC---CCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred cCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc-------cccc---eeEEecCCCceEEEEecCCEEEEEECc
Confidence 99999999986 59999999997 444333322211100 0000 012223345567778889999999999
Q ss_pred CCceeeeeeccCCCceeEEEEcCCCC
Q 043890 426 PGSTEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
+++.+. .+.+|..++..++|+|++.
T Consensus 323 ~~~~~~-~~~~~~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 323 SGEQIT-MLKGHYKTVDCCVFQSNFQ 347 (408)
T ss_dssp TCCEEE-EECCCSSCEEEEEEETTTT
T ss_pred CCccee-eeccCCCeEEEEEEcCCCC
Confidence 999988 8888876655555555544
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-37 Score=288.80 Aligned_cols=259 Identities=11% Similarity=0.132 Sum_probs=191.8
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCC--CCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDT--KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
|.++|++++|+|++++||+|+.||.|+|||+.++ +. ...+.+|.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~-----------------------~~~~~~h~----------- 55 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH-----------------------ARTFSDHD----------- 55 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE-----------------------CCCBCCCS-----------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE-----------------------EEEEecCC-----------
Confidence 5689999999999999999999999999999876 33 46677887
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh-hhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK-VKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.+++| +|++++|++++.|+.|++||+.+++ ....
T Consensus 56 -~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~--------------------------------------- 93 (377)
T 3dwl_C 56 -KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQT--------------------------------------- 93 (377)
T ss_dssp -SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCE---------------------------------------
T ss_pred -ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeee---------------------------------------
Confidence 78999999 9999999999999999999998764 1000
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
. .+.+|...|.+++|+|++++|+++ .|+.|++||+++.+..... ..
T Consensus 94 ---------------------------~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~ 140 (377)
T 3dwl_C 94 ---------------------------L-VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS-----KH 140 (377)
T ss_dssp ---------------------------E-ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC-----EE
T ss_pred ---------------------------e-EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee-----eE
Confidence 0 136788899999999999999999 9999999999976531100 13
Q ss_pred cCC-CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc--CCCCccccccccccEEEEEEecCCC
Q 043890 275 MED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE--APGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 275 ~~~-~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
+.. |...|.+++|+|++ ++|++++.|+.|++||++................ .......+ +|...|.+++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 445 89999999999998 9999999999999999976542111000000000 00001122 6778999999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCc----eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 352 HILSRD-YMTLKLWDINMDSGP----VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+|++++ |+.|++||+.+ ... +..+..|...+. +++|+|++++|++++.++.+ +|+..
T Consensus 219 ~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~---------------~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLR---------------SLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSCEE---------------EEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCceE---------------EEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999986 59999999997 454 666777766544 89999999999998877666 66655
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-35 Score=276.32 Aligned_cols=258 Identities=12% Similarity=0.179 Sum_probs=198.8
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|.+++|+|++.+|++|+.|+.|+|||+.+++. ...+.+|.
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~-----------------------~~~~~~h~--------- 118 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT-----------------------YKRFVGHQ--------- 118 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE-----------------------EEEEECCC---------
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-----------------------EEEEcCCC---------
Confidence 3457999999999999999999999999999999998876 67888998
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|++++|++++.|+.|++||+........
T Consensus 119 ---~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~~~~~~~-------------------------------------- 155 (343)
T 2xzm_R 119 ---SEVYSVAF--SPDNRQILSAGAEREIKLWNILGECKFSS-------------------------------------- 155 (343)
T ss_dssp ---SCEEEEEE--CSSTTEEEEEETTSCEEEEESSSCEEEEC--------------------------------------
T ss_pred ---CcEEEEEE--CCCCCEEEEEcCCCEEEEEeccCCceeee--------------------------------------
Confidence 78999999 99999999999999999999863221100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC----------CEEEEE-cCCeEEEEEccCCCc
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG----------ETFISA-DDLRINLWNLEISNQ 263 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----------~~l~~~-~dg~i~iwd~~~~~~ 263 (509)
....+|...|.+++|+|++ .+|+++ .|+.|++||.. .+.
T Consensus 156 -----------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~ 205 (343)
T 2xzm_R 156 -----------------------------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQI 205 (343)
T ss_dssp -----------------------------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEE
T ss_pred -----------------------------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cce
Confidence 0014677889999999886 789998 99999999944 222
Q ss_pred eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 264 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
. ..+..|...|.+++|+|++ ++|++++.|+.|++||++..... ...+.. ...|.+
T Consensus 206 ~--------~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~-------------~~~v~~ 260 (343)
T 2xzm_R 206 R--------YTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA-------------GSTINQ 260 (343)
T ss_dssp E--------EEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC-------------SSCEEE
T ss_pred e--------EEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC-------------CCcEEE
Confidence 1 2456799999999999998 99999999999999999544321 222221 246999
Q ss_pred EEEecCCCEEEEecCCeEEEEECCCCCCceE--EEeeccccccccccc-ccCCCccceeeEEEcCCCCEEEEeeCCCcEE
Q 043890 344 IKFAKDGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEYLRPKLCDL-YENDSIFDKFECCLSGDGLRVATGSYSNLFR 420 (509)
Q Consensus 344 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 420 (509)
++|+|++.+++++.++.|++||+.+ ..... .+..+. ....... .+.. .|.+++|+|+|++|++|+.||.|+
T Consensus 261 v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 261 IAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEP--ITKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIR 334 (343)
T ss_dssp EEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCS--GGGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCc--chhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEE
Confidence 9999999999988888999999986 33332 332111 0000000 0111 234899999999999999999999
Q ss_pred EEeCCCCc
Q 043890 421 VFGCAPGS 428 (509)
Q Consensus 421 iw~~~~~~ 428 (509)
+|++.+++
T Consensus 335 ~w~~~~g~ 342 (343)
T 2xzm_R 335 TFSFETSA 342 (343)
T ss_dssp EEEEEEEE
T ss_pred EEEEEccC
Confidence 99987653
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-35 Score=281.36 Aligned_cols=257 Identities=16% Similarity=0.233 Sum_probs=201.6
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
..|.+++|+|+|++||+|+.|+.|+|||+.+++. ...+.+|. ..|
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-----------------------~~~~~~h~------------~~v 168 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-----------------------VMILQGHE------------QDI 168 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS------------SCE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----------------------EEEEccCC------------CCE
Confidence 4599999999999999999999999999988766 67788998 789
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
.+++| +|++++|++++.|++|++||+.+++....
T Consensus 169 ~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-------------------------------------------- 202 (393)
T 1erj_A 169 YSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLT-------------------------------------------- 202 (393)
T ss_dssp EEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE--------------------------------------------
T ss_pred EEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEE--------------------------------------------
Confidence 99999 99999999999999999999987653211
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
..+...+.+++|+| ++++|+++ .|+.|++||++++.....+ ........+|
T Consensus 203 --------------------------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~~h 255 (393)
T 1erj_A 203 --------------------------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-DSENESGTGH 255 (393)
T ss_dssp --------------------------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-C------CCC
T ss_pred --------------------------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-cccccCCCCC
Confidence 22445689999999 89999999 9999999999987644322 1111233679
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD- 357 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~- 357 (509)
...|.+++|+|++ ++|++++.|+.|++||++..... ..............+.+|...|.+++|+|++++|++|+
T Consensus 256 ~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~ 330 (393)
T 1erj_A 256 KDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNK----SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330 (393)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred CCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCc----ccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC
Confidence 9999999999998 99999999999999999875421 11100111111223556778999999999999999986
Q ss_pred CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC------CCCEEEEeeCCCcEEEEeCCC
Q 043890 358 YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG------DGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 358 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~ 426 (509)
|+.|++||+.+ ++++..+.+|...+. +++|++ ++++|++|+.||.|+||++..
T Consensus 331 D~~v~iwd~~~-~~~~~~l~~h~~~v~---------------~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 331 DRGVLFWDKKS-GNPLLMLQGHRNSVI---------------SVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TSEEEEEETTT-CCEEEEEECCSSCEE---------------EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCC-CeEEEEECCCCCCEE---------------EEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 59999999997 788888988887654 777765 789999999999999999864
No 55
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.5e-35 Score=273.72 Aligned_cols=248 Identities=21% Similarity=0.352 Sum_probs=205.0
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|...|.+++|+|+|++||+|+.|+.+++|++........ ......+.+|.
T Consensus 103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~-----------------~~~~~~~~~h~----------- 154 (354)
T 2pbi_B 103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM-----------------AAKKKSVAMHT----------- 154 (354)
T ss_dssp ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS-----------------GGGCEEEEECS-----------
T ss_pred ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc-----------------cccceeeeccC-----------
Confidence 45788999999999999999999999999999875532000 01134566777
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..|.++.| ++++..|++++.|++|++||+++++...
T Consensus 155 -~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~----------------------------------------- 190 (354)
T 2pbi_B 155 -NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQ----------------------------------------- 190 (354)
T ss_dssp -SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE-----------------------------------------
T ss_pred -CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEE-----------------------------------------
Confidence 78999999 9999999999999999999998765322
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
. +.+|...|.+++|+| ++++|++| .||.|++||+++++...
T Consensus 191 ---------------------------~-~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-------- 234 (354)
T 2pbi_B 191 ---------------------------S-FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-------- 234 (354)
T ss_dssp ---------------------------E-EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE--------
T ss_pred ---------------------------E-EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE--------
Confidence 1 367888999999987 47899999 99999999999876542
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.+..|...|.+++|+|++ .+|++++.|+.|++||++..+. +..+..+. +...+.+++|+|++++|
T Consensus 235 ~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~----~~~~~~~~----------~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 235 AFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADRE----VAIYSKES----------IIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCTT----------CCSCEEEEEECTTSSEE
T ss_pred EecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEcCCC----------cccceeEEEEeCCCCEE
Confidence 467899999999999998 9999999999999999998753 23332211 12468999999999999
Q ss_pred EEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 354 LSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 354 ~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
++|+ |+.|++||+.+ +..+..+.+|...+. +++|+|++++|++|+.|+.|+||+
T Consensus 300 ~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~---------------~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLK-GSRVSILFGHENRVS---------------TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTT-CSEEEEECCCSSCEE---------------EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCcEEEEECCC-CceEEEEECCCCcEE---------------EEEECCCCCEEEEEcCCCCEEecC
Confidence 9986 59999999986 677888888887654 999999999999999999999996
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.1e-34 Score=276.25 Aligned_cols=277 Identities=14% Similarity=0.244 Sum_probs=223.4
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee--ccCCcchhhccchhhhcc
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF--QSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~ 119 (509)
.++.|+||++ ++||+|. |++|+|||..+++. ...+ .+|. ..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~-----------------------~~~~~~~~~~------------~~ 149 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDI-----------------------LQLLQMEQPG------------EY 149 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCE-----------------------EEEEECCSTT------------CC
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCE-----------------------EEEEEecCCC------------Cc
Confidence 4678999976 5888886 89999999998876 3434 4555 67
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
|++|+| +|+|++|++|+.||.|++||+.+++....
T Consensus 150 V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~------------------------------------------- 184 (420)
T 4gga_A 150 ISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------------------------------------- 184 (420)
T ss_dssp EEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------------------------------
T ss_pred EEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------------------------------
Confidence 999999 99999999999999999999987753221
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+.+|...+.++++ ++.+|++| .|+.+++||.+....... .+.+|
T Consensus 185 --------------------------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~-------~~~~h 229 (420)
T 4gga_A 185 --------------------------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA-------TLSGH 229 (420)
T ss_dssp --------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-------EEECC
T ss_pred --------------------------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE-------Eeccc
Confidence 3678888888877 46789999 999999999987665432 46789
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-EEEEe-
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-HILSR- 356 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~- 356 (509)
...+..+.++|++ +++++++.|+.+++||...++.....+... ..|...|.+++|+|++. +++++
T Consensus 230 ~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~------------~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 230 SQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF------------TQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE------------CCCSSCEEEEEECTTCTTEEEEEE
T ss_pred ccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeee------------cccCCceeeeeeCCCcccEEEEEe
Confidence 9999999999998 999999999999999999876432222222 33457899999999665 55553
Q ss_pred -c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee--CCCcEEEEeCCCCceeee
Q 043890 357 -D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS--YSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 357 -~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~ 432 (509)
+ |+.|++||+.+ +.+...+..+... .++.|+|+++.|++++ .|+.|+|||+.+++++.
T Consensus 297 gs~D~~I~iwd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~- 358 (420)
T 4gga_A 297 GTSDRHIRIWNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA- 358 (420)
T ss_dssp CTTTCEEEEEETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE-
T ss_pred ecCCCEEEEEeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE-
Confidence 3 59999999997 6677766655432 2789999999988765 79999999999999988
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.+.+|. ..|++++|+|++++||+|+. +.|+||+.
T Consensus 359 ~l~gH~-------------------------------------------~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 359 ELKGHT-------------------------------------------SRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EECCCS-------------------------------------------SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEcCCC-------------------------------------------CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 888776 66889999999999999887 78999974
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=279.85 Aligned_cols=259 Identities=15% Similarity=0.227 Sum_probs=204.6
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|++++|+|++++||+|+.||.|+|||+..... .....+.+|.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~--------- 55 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE--------- 55 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS---------
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC---------
Confidence 4567999999999999999999999999999999984322 1256778888
Q ss_pred hhhccceeeEEEEcCC--CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 115 EIEEKINKIRWCQTAN--GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|++++| +++ +++|++++.||.|++||+.+++....
T Consensus 56 ---~~v~~~~~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------------------------------------ 94 (379)
T 3jrp_A 56 ---GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQI------------------------------------ 94 (379)
T ss_dssp ---SCEEEEEE--CCGGGCSEEEEEETTSCEEEEEEETTEEEEE------------------------------------
T ss_pred ---CcEEEEEe--CCCCCCCEEEEeccCCEEEEEEcCCCceeEe------------------------------------
Confidence 78999999 666 89999999999999999987641111
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
.. +..|...|.+++|+|+ +++|+++ .|+.|++||++.......
T Consensus 95 ------------------------------~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--- 140 (379)
T 3jrp_A 95 ------------------------------AV-HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--- 140 (379)
T ss_dssp ------------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---
T ss_pred ------------------------------ee-ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---
Confidence 11 3678889999999999 9999999 999999999998643322
Q ss_pred ccCCccCCCccceEEEEEeC-------------CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 270 VKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~-------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
..+..|...|.+++|+| ++ .+|++++.|+.|++||++.+......... +.+
T Consensus 141 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~ 204 (379)
T 3jrp_A 141 ---IIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST------------LEG 204 (379)
T ss_dssp ---EEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE------------ECC
T ss_pred ---EEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE------------Eec
Confidence 14567899999999999 56 89999999999999999876532111222 334
Q ss_pred ccccEEEEEEecC---CCEEEEec-CCeEEEEECCCCCCceE-EE-ee--cccccccccccccCCCccceeeEEEcCCCC
Q 043890 337 IIASISDIKFAKD---GRHILSRD-YMTLKLWDINMDSGPVA-TF-QV--HEYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 337 ~~~~i~~~~~s~~---~~~l~s~~-~~~i~iwd~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
|...|.+++|+|+ +.+|++++ |+.|++||++....... .+ .. |... |.+++|+|+++
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~ 269 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGN 269 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSC
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCC
Confidence 5589999999999 89999986 69999999987332221 11 11 2222 33899999999
Q ss_pred EEEEeeCCCcEEEEeCCCCce
Q 043890 409 RVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+|++++.||.|++|++..+..
T Consensus 270 ~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 270 VLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEEESSSSEEEEEEEETTE
T ss_pred EEEEecCCCcEEEEeCCCCCc
Confidence 999999999999999985443
No 58
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-35 Score=281.06 Aligned_cols=267 Identities=19% Similarity=0.326 Sum_probs=207.6
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+..|...|.+++|+|++++||+|+.|+.+++|++.+..... ........+.+|.
T Consensus 103 ~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~gh~--------- 157 (380)
T 3iz6_a 103 AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD----------------GNMPVSRVLTGHK--------- 157 (380)
T ss_dssp EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC----------------CSSTTCCBCCCCS---------
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc----------------CCccceeeccCCC---------
Confidence 345689999999999999999999999999999997654300 0011134567887
Q ss_pred hhhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|.++.| .|+ +.+|++|+.|++|++||+.+++.......
T Consensus 158 ---~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---------------------------------- 198 (380)
T 3iz6_a 158 ---GYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQRISIFGS---------------------------------- 198 (380)
T ss_dssp ---SCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCCEEEEECC----------------------------------
T ss_pred ---cceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec----------------------------------
Confidence 78999999 775 45799999999999999988764322110
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
.+..+|...|.+++|++ ++++|++| .|+.|++||++......
T Consensus 199 ------------------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~------ 242 (380)
T 3iz6_a 199 ------------------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV------ 242 (380)
T ss_dssp ------------------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC------
T ss_pred ------------------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce------
Confidence 01257888999999977 78999999 99999999998544332
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
..+.+|...|.+++|+|++ ++|++++.|++|++||+++++. +..+..+... ...+...|.+++|+|+|+
T Consensus 243 -~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~-----~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 243 -RTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDR-----NDNELPIVTSVAFSISGR 311 (380)
T ss_dssp -EEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEE----EEEECCCCSS-----SCCSSCSCSEEEECSSSS
T ss_pred -EEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcE----EEEecccccc-----cccccCceEEEEECCCCC
Confidence 2567899999999999998 9999999999999999998864 3344332110 111234689999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEE----eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATF----QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
+|++|+ ++.|++||+.. .+.+..+ .+|...+. +++|+|+|++|++|+.|+.|+||++..
T Consensus 312 ~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~---------------~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRIS---------------CLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCC---------------EEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceE---------------EEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999986 59999999986 5665555 34555443 999999999999999999999999986
Q ss_pred Cc
Q 043890 427 GS 428 (509)
Q Consensus 427 ~~ 428 (509)
.+
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-34 Score=270.56 Aligned_cols=265 Identities=10% Similarity=0.042 Sum_probs=208.1
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+|.+.|++++|+|++++|++|+.||.|+||++.+.+. ......+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------------~~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------------NVDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------------EEEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------------cccceeeeecC------------
Confidence 5999999999999999999999999999999987762 00123445676
Q ss_pred ccceeeEEEEcCCCc-eEEEeeCCCeEEEEec-cchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 118 EKINKIRWCQTANGA-LFLLSTNDKTIKFWKV-QEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|++++| +|+++ +|++++.||.|++||+ .+++...
T Consensus 57 ~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------------- 94 (342)
T 1yfq_A 57 HPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSPSFQA---------------------------------------- 94 (342)
T ss_dssp SCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred CceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence 78999999 88999 9999999999999999 7654211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecc--cccCeEEEEECCCCCEEEEE-cCCeEEEEEccC---------CCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI---------SNQ 263 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~---------~~~ 263 (509)
+.+ |...|.+++|+| +++|+++ .|+.|++||+++ .+.
T Consensus 95 ------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 95 ------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp ------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred ------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe
Confidence 255 888999999999 9999999 999999999986 332
Q ss_pred eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC-CcccCCceeeeccccCCCCccccccccccEE
Q 043890 264 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASIS 342 (509)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 342 (509)
. ..+. |...|.+++|+|++ +++++.|+.|++||+++ .... .... ...|...+.
T Consensus 144 ~--------~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~---~~~~-----------~~~~~~~i~ 197 (342)
T 1yfq_A 144 S--------NNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDN---GTIE-----------ESGLKYQIR 197 (342)
T ss_dssp S--------SSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCC---CEEE-----------ECSCSSCEE
T ss_pred e--------eEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCcccccc---ceee-----------ecCCCCcee
Confidence 2 1333 88999999999874 99999999999999998 5421 1111 112346899
Q ss_pred EEEEec-CCCEEEEec-CCeEEEEECCCC-----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 343 DIKFAK-DGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 343 ~~~~s~-~~~~l~s~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
+++|+| +++++++++ ++.|++||++.. ......+..|...... ......|.+++|+|++++|++++.
T Consensus 198 ~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~ 271 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD------TNLAYPVNSIEFSPRHKFLYTAGS 271 (342)
T ss_dssp EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC------CSSCCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc------cccceeEEEEEEcCCCCEEEEecC
Confidence 999999 999999986 599999999874 2777788777541100 000112348999999999999999
Q ss_pred CCcEEEEeCCCCceeeeeeccC-CCc
Q 043890 416 SNLFRVFGCAPGSTEATTLEAS-KNP 440 (509)
Q Consensus 416 dg~i~iw~~~~~~~~~~~~~~~-~~~ 440 (509)
||.|++||+.+++.+. .+.+| ..+
T Consensus 272 dg~i~vwd~~~~~~~~-~~~~~h~~~ 296 (342)
T 1yfq_A 272 DGIISCWNLQTRKKIK-NFAKFNEDS 296 (342)
T ss_dssp TSCEEEEETTTTEEEE-ECCCCSSSE
T ss_pred CceEEEEcCccHhHhh-hhhcccCCC
Confidence 9999999999999887 77766 533
No 60
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.4e-35 Score=274.76 Aligned_cols=199 Identities=13% Similarity=0.066 Sum_probs=151.8
Q ss_pred ccccCeEEEEECCCCCEEEEE---cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeE
Q 043890 228 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 304 (509)
Q Consensus 228 ~~~~~v~~i~~~~~~~~l~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i 304 (509)
.+...+++++|+|||++++++ .|+.|++||+++.+.... + .|...|.+++|+|++ +++++++.+ .+
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~ 199 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITGS-SL 199 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECSS-CE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccce-eE
Confidence 345568899999999997654 589999999998765542 2 367789999999998 899998855 46
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CC----eEEEEECCCCCCc---eEEE
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YM----TLKLWDINMDSGP---VATF 376 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~----~i~iwd~~~~~~~---~~~~ 376 (509)
++|+..+++.. ... ....|...|.+++|+|+++++++++ ++ .+++||+...... ...+
T Consensus 200 ~~~~~~~~~~~----~~~----------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~ 265 (365)
T 4h5i_A 200 EVISTVTGSCI----ARK----------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV 265 (365)
T ss_dssp EEEETTTCCEE----EEE----------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEeccCcce----eee----------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee
Confidence 66666665421 111 1223457899999999999999874 33 6888888752211 2234
Q ss_pred eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc
Q 043890 377 QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS 456 (509)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 456 (509)
..|...+ ++++|+|||++||+|+.|+.|+|||+.+++++...+.+|.
T Consensus 266 ~~~~~~V---------------~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~------------------ 312 (365)
T 4h5i_A 266 TNRFKGI---------------TSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS------------------ 312 (365)
T ss_dssp ESSCSCE---------------EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS------------------
T ss_pred cCCCCCe---------------EeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc------------------
Confidence 4454443 3999999999999999999999999999998873356665
Q ss_pred ceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 457 SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
..|++++|+||+++||+++. ++|+||+.
T Consensus 313 -------------------------~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 313 -------------------------FAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp -------------------------SCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred -------------------------CCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 67899999999999999998 89999973
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-34 Score=267.18 Aligned_cols=283 Identities=15% Similarity=0.180 Sum_probs=216.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|.++|.+++|+|+|++++++..++.+.+|....... .....+|. .
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~h~------------~ 52 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-----------------------QINTLNHG------------E 52 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-----------------------EEEEECCS------------S
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccc-----------------------cceeccCC------------C
Confidence 678999999999999999998877666654433222 23334676 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|++++| +|++++|++++ ||.|++||+.++.......
T Consensus 53 ~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~---------------------------------------- 89 (337)
T 1gxr_A 53 VVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPVS---------------------------------------- 89 (337)
T ss_dssp CCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCSE----------------------------------------
T ss_pred ceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceeeee----------------------------------------
Confidence 8999999 99999999999 9999999998764221100
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
.....+|...|.+++|+|++++|+++ .|+.|++||+++++.... ..+..
T Consensus 90 ------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------~~~~~ 139 (337)
T 1gxr_A 90 ------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK------AELTS 139 (337)
T ss_dssp ------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE------EEEEC
T ss_pred ------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee------eeccc
Confidence 00013688889999999999999999 899999999998663221 24567
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+.. |...|.+++|+|++++|++++
T Consensus 140 ~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~----~~~~~~------------~~~~i~~~~~~~~~~~l~~~~ 202 (337)
T 1gxr_A 140 SAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL----VRQFQG------------HTDGASCIDISNDGTKLWTGG 202 (337)
T ss_dssp SSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECC------------CSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----eeeeec------------ccCceEEEEECCCCCEEEEEe
Confidence 88999999999998 9999999999999999998763 344433 347899999999999999986
Q ss_pred -CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 358 -YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 358 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
++.|++||+++ .+.+..+. +...+ .+++|+|++++|++++.|+.|++||+.+++.. .+..
T Consensus 203 ~dg~i~~~d~~~-~~~~~~~~-~~~~v---------------~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--~~~~ 263 (337)
T 1gxr_A 203 LDNTVRSWDLRE-GRQLQQHD-FTSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHL 263 (337)
T ss_dssp TTSEEEEEETTT-TEEEEEEE-CSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EECC
T ss_pred cCCcEEEEECCC-CceEeeec-CCCce---------------EEEEECCCCCEEEEEcCCCcEEEEECCCCCeE--EEcC
Confidence 59999999996 55555543 33222 38999999999999999999999999977643 4444
Q ss_pred CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 437 SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 437 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
|. ..|.+++|+|++++|++++. +.+++|+
T Consensus 264 ~~-------------------------------------------~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 264 HE-------------------------------------------SCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp CS-------------------------------------------SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred Cc-------------------------------------------cceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 44 45666777777777666665 5666665
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=267.73 Aligned_cols=263 Identities=14% Similarity=0.206 Sum_probs=186.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|.+.|.+++|+|++++||+|+.|+.|+|||+...... .........+.+|. .
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~----------------~~~~~~~~~~~~h~------------~ 108 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR----------------TFEMDLLAIIEGHE------------N 108 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----------------------CCCEEEEEEC----------------
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc----------------cccceeEEEEcCCC------------C
Confidence 9999999999999999999999999999998643210 00112356778888 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.+++| +|++++|++++.|++|++||+......
T Consensus 109 ~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~-------------------------------------------- 142 (330)
T 2hes_X 109 EVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEE-------------------------------------------- 142 (330)
T ss_dssp CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCC--------------------------------------------
T ss_pred cEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCC--------------------------------------------
Confidence 8999999 999999999999999999999532100
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
.++... +.+|...|.+++|+|++++|+++ .|+.|++||.++...... ..+.+
T Consensus 143 --------------------~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~------~~~~~ 195 (330)
T 2hes_X 143 --------------------YECISV-LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV------AVLNG 195 (330)
T ss_dssp --------------------CEEEEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------EEECC
T ss_pred --------------------eEEEEE-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE------EEccC
Confidence 011122 37899999999999999999999 899999999886531110 25678
Q ss_pred CccceEEEEEeCCC-CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc-cccccEEEEEEecCCCEEEE
Q 043890 278 LTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT-EIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 278 ~~~~i~~l~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s 355 (509)
|...|.+++|+|++ ..+|++++.|++|++||++.+..... ..+.. ...+. .|...|.+++|++++ +|++
T Consensus 196 h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~~------~~~~~~~h~~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ--QEWVC------EAILPDVHKRQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC--EEEEE------EEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc--ceeEE------eeecccccccceEEEEEcCCC-EEEE
Confidence 99999999999983 16899999999999999976531100 00000 01112 266789999999776 5666
Q ss_pred e-cCCeEEEEECCCCC-CceEE-Eeeccc-ccccccccccCCCccceeeEEEcC--CCCEEEEeeCCCcEEEEeCCC
Q 043890 356 R-DYMTLKLWDINMDS-GPVAT-FQVHEY-LRPKLCDLYENDSIFDKFECCLSG--DGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 356 ~-~~~~i~iwd~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~ 426 (509)
+ .|+.|+|||..... +.... +..|.. . |.+++|+| ++++|++|+.||.|+||++++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~---------------v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYE---------------INVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSC---------------EEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccce---------------EEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 5 57999999987521 11222 233432 2 33899999 789999999999999999874
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=258.90 Aligned_cols=277 Identities=14% Similarity=0.238 Sum_probs=216.7
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeec--cCCcchhhccchhhhcc
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ--SHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~ 119 (509)
..++|+||+++ +||+|. |++|+|||+.+++. ...+. +|. ..
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~-----------------------~~~~~~~~~~------------~~ 69 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI-----------------------LQLLQMEQPG------------EY 69 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCE-----------------------EEEEECCSTT------------CC
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCE-----------------------EEEEEecCCC------------Ce
Confidence 35789999886 888875 89999999998876 44444 454 67
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
|++++| +|++++|++|+.||+|++||+++++....
T Consensus 70 V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~------------------------------------------- 104 (318)
T 4ggc_A 70 ISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------------------------------------- 104 (318)
T ss_dssp EEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------------------
T ss_pred EEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEE-------------------------------------------
Confidence 999999 99999999999999999999988753322
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
+.+|...+.++.+ ++..++++ .++.+++|+......... .+.+|
T Consensus 105 --------------------------~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~-------~~~~~ 149 (318)
T 4ggc_A 105 --------------------------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA-------TLSGH 149 (318)
T ss_dssp --------------------------EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-------EEECC
T ss_pred --------------------------ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE-------EEcCc
Confidence 2567776766554 56789999 899999999987665432 45778
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE---E
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL---S 355 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~---s 355 (509)
...+..+.+.+++ ++|++++.|+.|++||+++++......... ..+...|.++.++|++..++ +
T Consensus 150 ~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 150 SQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF------------TQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEE------------CCCCSCEEEEEECTTSTTEEEEEE
T ss_pred cCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeee------------cccCCceEEEEecCCCCcEEEEEe
Confidence 9999999999998 999999999999999999876422212222 22346899999999766433 3
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee--CCCcEEEEeCCCCceeee
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS--YSNLFRVFGCAPGSTEAT 432 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~ 432 (509)
++ ++.|++||... ........ +...+ ..+.|+|+++.+++++ .|+.|+|||+.+++++.
T Consensus 217 ~~~~~~i~lwd~~~-~~~~~~~~-~~~~v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~- 278 (318)
T 4ggc_A 217 GTSDRHIRIWNVCS-GACLSAVD-AHSQV---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA- 278 (318)
T ss_dssp CTTTCEEEEEETTT-CCEEEEEE-CSSCE---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE-
T ss_pred cCCCCEEEEEeccc-cccccccc-ceeee---------------eeeeecccccceEEEEEcCCCEEEEEECCCCcEEE-
Confidence 34 49999999986 44443333 33222 2789999999887765 79999999999999988
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
++.+|. ..|++++|+|++++||+++. +.|+||+.
T Consensus 279 ~l~gH~-------------------------------------------~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 279 ELKGHT-------------------------------------------SRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EECCCS-------------------------------------------SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEcCCC-------------------------------------------CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 888776 66899999999999999988 78999974
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-34 Score=273.30 Aligned_cols=278 Identities=11% Similarity=0.203 Sum_probs=217.3
Q ss_pred ecccc--eEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeecc-CCcchhhccch
Q 043890 38 QEVDI--ISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQS-HEPEFDYLKSL 114 (509)
Q Consensus 38 ~h~~~--I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 114 (509)
+|.+. +.+++|++ ..+++++.||.|++||+.+++. ...+.. |.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~-----------------------~~~~~~~~~--------- 134 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV-----------------------SALAETDES--------- 134 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE-----------------------EEEEECCTT---------
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE-----------------------eEeeecCCC---------
Confidence 34444 45566665 5577788899999999998776 333433 55
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|++++| +|++++|++++.||.|++||+.+++....
T Consensus 135 ---~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------- 171 (401)
T 4aez_A 135 ---TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRT-------------------------------------- 171 (401)
T ss_dssp ---CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEE--------------------------------------
Confidence 77999999 99999999999999999999987642211
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
+.+|...|.+++| ++++|+++ .||.|++||++.......
T Consensus 172 -------------------------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~------- 211 (401)
T 4aez_A 172 -------------------------------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG------- 211 (401)
T ss_dssp -------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-------
T ss_pred -------------------------------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee-------
Confidence 3678889999999 56789999 999999999996554332
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-E
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-H 352 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~ 352 (509)
.+..|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+.. |...|.+++|+|++. +
T Consensus 212 ~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~------------~~~~v~~~~~~p~~~~l 274 (401)
T 4aez_A 212 TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIP----KFTKTN------------HNAAVKAVAWCPWQSNL 274 (401)
T ss_dssp EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSE----EEEECC------------CSSCCCEEEECTTSTTE
T ss_pred EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCc----cEEecC------------CcceEEEEEECCCCCCE
Confidence 456799999999999998 9999999999999999998753 333333 447899999999765 6
Q ss_pred EEEec---CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE--eeCCCcEEEEeCCCC
Q 043890 353 ILSRD---YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT--GSYSNLFRVFGCAPG 427 (509)
Q Consensus 353 l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~~~ 427 (509)
+++++ |+.|++||+.+ .+++..+..+ ..+ .+++|+|++++|++ |+.||.|++|++.++
T Consensus 275 l~~~~gs~d~~i~i~d~~~-~~~~~~~~~~-~~v---------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAAT-GARVNTVDAG-SQV---------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EEEECCTTTCEEEEEETTT-CCEEEEEECS-SCE---------------EEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EEEecCCCCCEEEEEECCC-CCEEEEEeCC-CcE---------------EEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 66654 69999999996 6777766533 222 38999999999999 448999999999987
Q ss_pred ceeee-eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceE
Q 043890 428 STEAT-TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLY 505 (509)
Q Consensus 428 ~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~ 505 (509)
+.... .+.+| ...|.+++|+|++++|++++. +.++
T Consensus 338 ~~~~~~~~~~h-------------------------------------------~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 338 GLTKQVDIPAH-------------------------------------------DTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEEEEEEECC-------------------------------------------SSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred cceeEEEecCC-------------------------------------------CCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 65440 12333 367899999999999999887 7899
Q ss_pred EEeC
Q 043890 506 MYYA 509 (509)
Q Consensus 506 v~~~ 509 (509)
+|+.
T Consensus 375 iw~~ 378 (401)
T 4aez_A 375 FWRV 378 (401)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9974
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=297.69 Aligned_cols=446 Identities=10% Similarity=0.044 Sum_probs=265.5
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCC----------CccccccccccccccCCcc------------
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHG----------GSRRDLERMDYSTSRHPEF------------ 95 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~------------ 95 (509)
.|.+.|++++|+|++++||+|+.||.|++||+.+.+... ..++.+...+..+.++|..
T Consensus 96 ~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 96 FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 377899999999999999999999999999998765310 1223344566777777742
Q ss_pred --------eEEeeeccCCcchhh------ccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccC-
Q 043890 96 --------RYKTEFQSHEPEFDY------LKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMN- 160 (509)
Q Consensus 96 --------~~~~~~~~h~~~~~~------~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~- 160 (509)
.....+.+|.+.... .....|...|++++| +|+|++|++++.||.|++||+.+++........
T Consensus 176 vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f--spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 176 LTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY--HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp EEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE--CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred EEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 112223333000000 000012367999999 999999999999999999999887654321110
Q ss_pred --CCC-CcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC-----Cccccccccccccc------------eeee
Q 043890 161 --VDP-SKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI-----PSLRLPTVTSNETS------------LVAR 220 (509)
Q Consensus 161 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~------------~~~~ 220 (509)
... ....+.+ .+.+......++|++....-...++++++.+ ..+.+|++...... ....
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 254 TEINVPQPDYIRD-SSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp SCTTSCCTTCCCC-CSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred cccCCCCCcCCCC-CccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 000 0000000 0011223455667543221111222333222 35666664211000 0001
Q ss_pred eeeeeecccccCeEEEEECC----------CCCEEEEE-cCCeEEEEEccCCCceeeEe---------------------
Q 043890 221 CRRVYAHAHDYHINSISNNS----------DGETFISA-DDLRINLWNLEISNQSFNIV--------------------- 268 (509)
Q Consensus 221 ~~~~~~~~~~~~v~~i~~~~----------~~~~l~~~-~dg~i~iwd~~~~~~~~~~~--------------------- 268 (509)
+.+.+...+...+.++.+.+ +...++++ .||.|++||+.++.......
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 12222224667788888765 23467777 89999999997653221100
Q ss_pred ------------eccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 269 ------------DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 269 ------------~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
......+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.... ...+.... ......+
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~ 486 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKA 486 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCS
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCC
Confidence 00011244555566666778887 999999999999999999875311 01111000 0000125
Q ss_pred ccccEEEEEEecCCCEEEEec-CCeEEEEECCCCC--------------------------------------------C
Q 043890 337 IIASISDIKFAKDGRHILSRD-YMTLKLWDINMDS--------------------------------------------G 371 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~--------------------------------------------~ 371 (509)
|...|.+++|+||+++||+|+ |++|+|||+.+.. +
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 678999999999999999986 5999999997531 1
Q ss_pred ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee----eeec-cCCCceeEEEE
Q 043890 372 PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA----TTLE-ASKNPMRRQVQ 446 (509)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~-~~~~~v~~~~~ 446 (509)
++..+.+|...+ ++++|+||| +||+|+.|++|+|||++++..+. ..+. +|...|++++|
T Consensus 567 ~~~~l~~h~~~V---------------~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~F 630 (902)
T 2oaj_A 567 PSTAVHANKGKT---------------SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEF 630 (902)
T ss_dssp EEEEECCCSCSE---------------EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEE
T ss_pred eeEEEEcCCCcE---------------EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEE
Confidence 133444454443 399999999 99999999999999998776543 1343 89999999999
Q ss_pred c-----CCCC---CCc---ccceeeEeec---CCCCCcccCCCcc-cccccceEEEE-Ec--------------------
Q 043890 447 T-----PSRP---SRS---LSSITRVVRR---GSDVPGVDTNGNS-FDFTTKLLHLA-WH-------------------- 490 (509)
Q Consensus 447 s-----~~~~---~~~---~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~i~~~~-~~-------------------- 490 (509)
+ ||+. ... ..+..+.|+. ........+.++. +.+..+|..++ |+
T Consensus 631 s~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~ 710 (902)
T 2oaj_A 631 VIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKG 710 (902)
T ss_dssp EEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGT
T ss_pred EEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCC
Confidence 9 8863 221 2244555552 1111111222221 11245677666 66
Q ss_pred --CCCcEEEEEecCceEEEeC
Q 043890 491 --PTENSIACAAANSLYMYYA 509 (509)
Q Consensus 491 --p~~~~la~~~~~~i~v~~~ 509 (509)
+++.+||+ ++..++||+.
T Consensus 711 ~~~~~~~l~~-~~~~ir~~~~ 730 (902)
T 2oaj_A 711 LCIPGIVLIT-GFDDIRLITL 730 (902)
T ss_dssp CCCCEEEEEE-CSSEEEEECT
T ss_pred CCCCeEEEEE-eccceEEEeC
Confidence 45544444 4889999974
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8e-34 Score=274.63 Aligned_cols=312 Identities=11% Similarity=0.165 Sum_probs=241.6
Q ss_pred cceecccce-EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDII-SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I-~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+.+|.+.| .| +++++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~~~h~-------- 159 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC-----------------------LRTLVGHT-------- 159 (445)
T ss_dssp EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE-----------------------EEECCCCS--------
T ss_pred EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE-----------------------EEEEcCCC--------
Confidence 456798875 55 455689999999999999999998876 67888898
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|.++.| + +++|++++.||.|++||+.+++....
T Consensus 160 ----~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------- 194 (445)
T 2ovr_B 160 ----GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECIHT------------------------------------- 194 (445)
T ss_dssp ----SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ----CCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEEEE-------------------------------------
Confidence 78999999 4 56999999999999999987653221
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
+.+|...|.+++|+ ++.++++ .||.|++||+++++...
T Consensus 195 --------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~------- 233 (445)
T 2ovr_B 195 --------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH------- 233 (445)
T ss_dssp --------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE-------
T ss_pred --------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE-------
Confidence 36788899999995 5678888 99999999999876543
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
.+..|...|.+++| ++ .++++++.|+.|++||+++++. +..+.. |...|.++.| ++.+
T Consensus 234 -~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~------------~~~~v~~~~~--~~~~ 291 (445)
T 2ovr_B 234 -VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETC----LHTLQG------------HTNRVYSLQF--DGIH 291 (445)
T ss_dssp -EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEE----EEEECC------------CSSCEEEEEE--CSSE
T ss_pred -EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcE----eEEecC------------CCCceEEEEE--CCCE
Confidence 45678999999999 55 7899999999999999988763 344443 4478999999 7889
Q ss_pred EEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 353 ILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 353 l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+++++ |+.|++||+++ .+++..+..|...+. ++. +++++|++++.||.|++||+.+++.+.
T Consensus 292 l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~---------------~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~ 353 (445)
T 2ovr_B 292 VVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTS---------------GME--LKDNILVSGNADSTVKIWDIKTGQCLQ 353 (445)
T ss_dssp EEEEETTSCEEEEETTT-CCEEEEECCCCSCEE---------------EEE--EETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEeCCCeEEEEECCC-CCEEEEEcCCcccEE---------------EEE--EeCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99876 69999999997 678888887765532 444 467899999999999999999999887
Q ss_pred eeecc---CCCceeEEEEcCCCCCCc---ccceeeEeecCCCCCcccCC-CcccccccceEEEEEcCCCcEEEEEecCc-
Q 043890 432 TTLEA---SKNPMRRQVQTPSRPSRS---LSSITRVVRRGSDVPGVDTN-GNSFDFTTKLLHLAWHPTENSIACAAANS- 503 (509)
Q Consensus 432 ~~~~~---~~~~v~~~~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~la~~~~~~- 503 (509)
.+.. |..++.++++++ .... ..+..+.|+.........+. .....+...|.+++|+|++.+||+++.++
T Consensus 354 -~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 354 -TLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp -EECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred -EEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 8876 889999999964 2211 12445666532222111110 00013467899999999999999999844
Q ss_pred ----eEEEe
Q 043890 504 ----LYMYY 508 (509)
Q Consensus 504 ----i~v~~ 508 (509)
++||+
T Consensus 431 ~~~~l~v~d 439 (445)
T 2ovr_B 431 EETKLLVLD 439 (445)
T ss_dssp SCCEEEEEE
T ss_pred CccEEEEEE
Confidence 88886
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-33 Score=257.44 Aligned_cols=245 Identities=18% Similarity=0.256 Sum_probs=190.1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|++++| +++|++|++|+.|++|++||+.+....
T Consensus 10 ~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------------------- 44 (297)
T 2pm7_B 10 EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHK------------------------------------------- 44 (297)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBC-------------------------------------------
T ss_pred CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcE-------------------------------------------
Confidence 88999999 999999999999999999998743210
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+... +.+|...|.+++|+++ +++|+++ .|+.|++||+++++.... ..
T Consensus 45 -----------------------~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------~~ 94 (297)
T 2pm7_B 45 -----------------------LIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------AV 94 (297)
T ss_dssp -----------------------CCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------EE
T ss_pred -----------------------EEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------EE
Confidence 0111 3789999999999864 8999999 999999999987642111 14
Q ss_pred cCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC---
Q 043890 275 MEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--- 349 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--- 349 (509)
+..|...|.+++|+|+ + .+|++++.|+.|++||++...... ... +.+|...|.+++|+|+
T Consensus 95 ~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~------------~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 95 HAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII------------IDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp ECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE------------EECCSSCEEEEEECCCC--
T ss_pred eecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee------------eecccCccceEeecCCccc
Confidence 5678999999999997 6 899999999999999998764210 122 3345578999999997
Q ss_pred ----------CCEEEEec-CCeEEEEECCCCCC---ceEEEeecccccccccccccCCCccceeeEEEcCCC---CEEEE
Q 043890 350 ----------GRHILSRD-YMTLKLWDINMDSG---PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG---LRVAT 412 (509)
Q Consensus 350 ----------~~~l~s~~-~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~ 412 (509)
+++|++|+ |+.|+|||+++... ....+.+|...+. +++|+|++ ++|++
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~---------------~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR---------------DVAWSPTVLLRSYMAS 224 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE---------------EEEECCCCSSSEEEEE
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE---------------EEEECCCCCCceEEEE
Confidence 57899876 69999999986322 4456777776654 99999985 89999
Q ss_pred eeCCCcEEEEeCCCCce--eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEc
Q 043890 413 GSYSNLFRVFGCAPGST--EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWH 490 (509)
Q Consensus 413 ~~~dg~i~iw~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 490 (509)
++.|++|+|||++++.. ....+..+ .|...|.+++|+
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~-----------------------------------------~~~~~v~~~~~s 263 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLLKEE-----------------------------------------KFPDVLWRASWS 263 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSS-----------------------------------------CCSSCEEEEEEC
T ss_pred EECCCcEEEEEeCCCCCccceeeeecc-----------------------------------------cCCCcEEEEEEC
Confidence 99999999999876431 11011000 134679999999
Q ss_pred CCCcEEEEEec-CceEEEe
Q 043890 491 PTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 491 p~~~~la~~~~-~~i~v~~ 508 (509)
|++++||+++. +.++||+
T Consensus 264 ~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp SSSCCEEEEETTSCEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEE
Confidence 99999999887 7899996
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=277.16 Aligned_cols=287 Identities=14% Similarity=0.222 Sum_probs=217.5
Q ss_pred ceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEE
Q 043890 19 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYK 98 (509)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (509)
...|++...-..+ ......|...|.+++|+|++++||+|+.||.|++|++..... .....
T Consensus 47 v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~~ 106 (416)
T 2pm9_A 47 LELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINSM 106 (416)
T ss_dssp CEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCEE
T ss_pred EEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccch
Confidence 3457765432111 122345899999999999999999999999999999987322 00125
Q ss_pred eeeccCCcchhhccchhhhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 99 TEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 99 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
..+.+|. ..|++++| +|+ +++|++++.||.|++||+.+++......
T Consensus 107 ~~~~~h~------------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------- 153 (416)
T 2pm9_A 107 ARFSNHS------------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------------- 153 (416)
T ss_dssp EECCCSS------------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------------------
T ss_pred hhccCCc------------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccc-------------------
Confidence 6777887 78999999 888 8899999999999999998764111000
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINL 255 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~i 255 (509)
....+ .....|...|.+++|+|+ +.+|+++ .|+.|++
T Consensus 154 ----------------------------~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 154 ----------------------------TPLTP-------------GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp ----------------------------CCBCC-------------CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred ----------------------------ccccc-------------ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 00000 002568888999999999 7899999 9999999
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC---eEEEEECCCCcccCCceeeeccccCCCCcc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDLRQSALCDSHAILFEEQEAPGSRS 332 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
||+++++....+.. .....+|...|.+++|+|++..+|++++.|+ .|++||++++... ...+.
T Consensus 193 wd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~--------- 258 (416)
T 2pm9_A 193 WDLKAKKEVIHLSY--TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN--------- 258 (416)
T ss_dssp EETTTTEEEEEECC--CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC---------
T ss_pred EECCCCCcceEEec--cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee---------
Confidence 99998765433210 0112234789999999999767999999998 9999999986421 22222
Q ss_pred ccccccccEEEEEEec-CCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCC-CE
Q 043890 333 FFTEIIASISDIKFAK-DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG-LR 409 (509)
Q Consensus 333 ~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 409 (509)
.+|...|.+++|+| ++++|++++ |+.|++||+++ .+++..+..|...+. +++|+|++ .+
T Consensus 259 --~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~---------------~~~~s~~~~~~ 320 (416)
T 2pm9_A 259 --QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCF---------------KTKFAPEAPDL 320 (416)
T ss_dssp --SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCC---------------CEEECTTCTTE
T ss_pred --cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceE---------------EEEECCCCCCE
Confidence 04557899999999 899999986 59999999997 688888888877654 89999999 89
Q ss_pred EEEeeCCCcEEEEeCCCCceee
Q 043890 410 VATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|++++.|+.|++|++.++....
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSS
T ss_pred EEEEecCCcEEEEEccCCCCCc
Confidence 9999999999999998766443
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-33 Score=272.54 Aligned_cols=320 Identities=11% Similarity=0.174 Sum_probs=238.3
Q ss_pred cceecccce-EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDII-SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I-~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+.+|.+.| .++.| ++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-----------------------~~~~~~h~-------- 162 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-----------------------LLQLSGHD-------- 162 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS--------
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-----------------------EEEEeCCC--------
Confidence 456788875 66666 567999999999999999988876 77888998
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|.+++| ++++ +|++++.||+|++||+.+++....
T Consensus 163 ----~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~------------------------------------- 198 (464)
T 3v7d_B 163 ----GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCTHV------------------------------------- 198 (464)
T ss_dssp ----SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ----cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEEEE-------------------------------------
Confidence 88999999 8887 999999999999999987653221
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEEC--CCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+.+|...|.+++|+ +++++++++ .|+.|++||+++..........
T Consensus 199 --------------------------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 199 --------------------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp --------------------------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred --------------------------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 36788999999997 577899999 9999999999876533210000
Q ss_pred c---------------CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc
Q 043890 271 K---------------PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT 335 (509)
Q Consensus 271 ~---------------~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
. ...+.+|...+.++ ++++ +++++++.|+.|++||+++++. +..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~----~~~~~~----------- 308 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKC----LYILSG----------- 308 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEE----EEEECC-----------
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecC-----------
Confidence 0 01356688888877 5666 8999999999999999998764 344433
Q ss_pred cccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 336 EIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
|...|.+++|+|+++++++++ |+.|++||+++ ++++..+.+|...+. +++|+ +++|++++
T Consensus 309 -~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~---------------~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 309 -HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVG---------------LLRLS--DKFLVSAA 369 (464)
T ss_dssp -CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE---------------EEEEC--SSEEEEEE
T ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEE---------------EEEEc--CCEEEEEe
Confidence 447899999999999999986 59999999997 788888888877654 78886 68999999
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCccc--ceeeEeecCCCCCcccCCCcccccccceEEEEEcCC
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLS--SITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPT 492 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 492 (509)
.||.|++||+.++.... .+ .|...+..+++++++.....+ +..+.|+.......... ...+...|.+++|+ .
T Consensus 370 ~dg~v~vwd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~---~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 370 ADGSIRGWDANDYSRKF-SY-HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN---ILKDADQIWSVNFK-G 443 (464)
T ss_dssp TTSEEEEEETTTCCEEE-EE-ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESC---TTTTCSEEEEEEEE-T
T ss_pred CCCcEEEEECCCCceee-ee-cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehh---hccCCCcEEEEEec-C
Confidence 99999999999887654 33 366778888999987753322 44555552222111110 11246889999997 3
Q ss_pred CcEEEEEecCceEE
Q 043890 493 ENSIACAAANSLYM 506 (509)
Q Consensus 493 ~~~la~~~~~~i~v 506 (509)
..++++++.++..+
T Consensus 444 ~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 444 KTLVAAVEKDGQSF 457 (464)
T ss_dssp TEEEEEEEETTEEE
T ss_pred CEEEEEEEeCCeEE
Confidence 34444444454443
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.1e-33 Score=258.38 Aligned_cols=247 Identities=13% Similarity=0.220 Sum_probs=203.8
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|...|.+++|+|++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----------------------~~~~~~~~---------- 107 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-----------------------LKTLKGHS---------- 107 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECCS----------
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE-----------------------EEEEcCCC----------
Confidence 446999999999999999999999999999999998776 67788888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.++.| +|++++|++++.|+.|++||+.+++....
T Consensus 108 --~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------------------- 144 (312)
T 4ery_A 108 --NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKT--------------------------------------- 144 (312)
T ss_dssp --SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEEEE---------------------------------------
T ss_pred --CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEEEE---------------------------------------
Confidence 78999999 99999999999999999999986642211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+..|...|.+++|+|++++|+++ .||.|++||+++++....+
T Consensus 145 ------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~------- 187 (312)
T 4ery_A 145 ------------------------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------- 187 (312)
T ss_dssp ------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------
T ss_pred ------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE-------
Confidence 36688889999999999999999 9999999999987654332
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
...+...+..++|+|++ ++|++++.|+.|++||+++++. +..+..+.... ..+......+++.+|+
T Consensus 188 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 188 IDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEK---------YCIFANFSVTGGKWIV 253 (312)
T ss_dssp CCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEEECSSCCSS---------SCCCEEEECSSSCEEE
T ss_pred eccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEEecCCce---------EEEEEEEEeCCCcEEE
Confidence 34467789999999998 9999999999999999998764 44454433110 1222333346788999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee--CCCcEEEEeCC
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS--YSNLFRVFGCA 425 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~ 425 (509)
+|+ |+.|++||+.+ .+.+..+.+|...+. +++|+|++++|++++ .|+.|++|+.+
T Consensus 254 sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~---------------~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 SGSEDNLVYIWNLQT-KEIVQKLQGHTDVVI---------------STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCTTSCEEEEETTT-CCEEEEECCCSSCEE---------------EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCCEEEEEECCC-chhhhhhhccCCcEE---------------EEeecCcCCceEEEEccCCccEEEecCC
Confidence 986 59999999996 788888888876654 899999999999987 69999999965
No 71
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-34 Score=272.48 Aligned_cols=278 Identities=14% Similarity=0.190 Sum_probs=218.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|.+.|++++|+|++++||+|+.||.|++|| .+++. ...+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~-----------------------~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL-----------------------LNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE-----------------------EEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe-----------------------eeeccCCC------------c
Confidence 688999999999999999999999999999 33333 56777887 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.+++| +|++++|++++.|+.|++||+.+++...........
T Consensus 151 ~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------------- 193 (425)
T 1r5m_A 151 PIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETG----------------------------------- 193 (425)
T ss_dssp CEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC-----------------------------------
Confidence 8999999 999999999999999999999887644332211000
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
...+.. .........+.+++|++++. ++++ .+|.|++||+++.+... .+..
T Consensus 194 ---~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~--------~~~~ 245 (425)
T 1r5m_A 194 ---GSSINA----------------ENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG--------KLIG 245 (425)
T ss_dssp -------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE--------EECC
T ss_pred ---ccceee----------------ccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee--------eecc
Confidence 000000 00022233477888988764 6666 99999999999866432 4567
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+.. |...|.+++|+|++ ++++++
T Consensus 246 ~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~------------~~~~i~~~~~~~~~-~l~~~~ 307 (425)
T 1r5m_A 246 HHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----QNCFYG------------HSQSIVSASWVGDD-KVISCS 307 (425)
T ss_dssp CSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----SEEECC------------CSSCEEEEEEETTT-EEEEEE
T ss_pred CCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----ceEecC------------CCccEEEEEECCCC-EEEEEe
Confidence 89999999999998 8999999999999999998764 333333 34789999999999 777765
Q ss_pred -CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc--------
Q 043890 358 -YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS-------- 428 (509)
Q Consensus 358 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------- 428 (509)
++.|++||+++ .+.+..+..|...+. +++|+|++++|++++.||.|++||+.+++
T Consensus 308 ~d~~i~i~d~~~-~~~~~~~~~~~~~i~---------------~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 308 MDGSVRLWSLKQ-NTLLALSIVDGVPIF---------------AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp TTSEEEEEETTT-TEEEEEEECTTCCEE---------------EEEECTTSSEEEEEETTSCEEEEECHHHHC-------
T ss_pred CCCcEEEEECCC-CcEeEecccCCccEE---------------EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec
Confidence 69999999996 677777777765544 89999999999999999999999999887
Q ss_pred ------------eeeeeeccCCC--ceeEEEEcCCCCC
Q 043890 429 ------------TEATTLEASKN--PMRRQVQTPSRPS 452 (509)
Q Consensus 429 ------------~~~~~~~~~~~--~v~~~~~s~~~~~ 452 (509)
.+. .+..|.. ++..++|+|++..
T Consensus 372 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 372 NRDGILNPLPIPLYA-SYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp -------CEECCEEE-EECCTTCCCCEEEEEECTTSSE
T ss_pred ccccccCcccchhhh-hhcCcccCCceEEEEccCCCce
Confidence 776 8999976 9999999998774
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.6e-34 Score=290.04 Aligned_cols=261 Identities=16% Similarity=0.283 Sum_probs=205.5
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+.+|.+.|.+++|+|++++|++|+.||.|+|||+.+++. ...+.+|.
T Consensus 425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~-----------------------~~~~~~h~--------- 472 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS-----------------------TRRFVGHT--------- 472 (694)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS---------
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc-----------------------eeEEeCCC---------
Confidence 4567999999999999999999999999999999988776 67788998
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..|.+++| +|++++|++++.|++|++||+.........
T Consensus 473 ---~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~------------------------------------- 510 (694)
T 3dm0_A 473 ---KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTIS------------------------------------- 510 (694)
T ss_dssp ---SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEEC-------------------------------------
T ss_pred ---CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeec-------------------------------------
Confidence 78999999 999999999999999999997543211100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC--CEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
....+|...|.+++|+|++ ..|+++ .|+.|++||+++.+...
T Consensus 511 -----------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~------ 555 (694)
T 3dm0_A 511 -----------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS------ 555 (694)
T ss_dssp -----------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE------
T ss_pred -----------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE------
Confidence 0015688889999999986 578888 89999999999765432
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.+.+|...|++++|+|++ ++|++++.|+.|++||+++++. +..+..+ ..|.+++|+|++.
T Consensus 556 --~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~----~~~~~~~-------------~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 556 --TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKK----LYSLEAN-------------SVIHALCFSPNRY 615 (694)
T ss_dssp --EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEE----EECCBCS-------------SCEEEEEECSSSS
T ss_pred --EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce----EEEecCC-------------CcEEEEEEcCCCc
Confidence 567899999999999998 9999999999999999998864 2333322 5799999999999
Q ss_pred EEEEecCCeEEEEECCCCCCceEEEeeccccccccc----ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 352 HILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLC----DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 352 ~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+|+++.++.|+|||+++ ...+..+..+........ .......+..+.+++|+|+|++|++|+.||.|+||++.
T Consensus 616 ~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 616 WLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999888899999996 566665544321110000 00001112224589999999999999999999999986
No 73
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=269.85 Aligned_cols=319 Identities=9% Similarity=0.004 Sum_probs=226.1
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
-.+.|.+|+|+|||+++|+++.|++|+ |....+ .+..+...+..+.++|... ...+.--..+...+..+.++.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----~l~gh~~~v~~V~FsPdg~-~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----DINCNSKNLFHVKEFPLEF-ENKLDFELAQQNGLLNSQPVC 86 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS----CCSSBGGGTEEEEEECCCC-CCTTTTSCCCSSCSSTTSCSC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc----eecCCCccEEEEEECCCCC-cceEEEEeCCCceEeecCCCC
Confidence 358899999999999999999999999 654443 3456677777888888652 111111111111133334458
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.+++| +|+|++||+++.||.|++||.++ +...
T Consensus 87 ~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~--~l~~------------------------------------------ 120 (588)
T 2j04_A 87 YPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK--MLTN------------------------------------------ 120 (588)
T ss_dssp CEEEEEE--CSSSSCEEEEETTSCEEEEETTE--EEEE------------------------------------------
T ss_pred cEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc--eeee------------------------------------------
Confidence 8999999 99999999999999999999544 1110
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccc-----cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCc------eee
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHD-----YHINSISNNSDGETFISA-DDLRINLWNLEISNQ------SFN 266 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~------~~~ 266 (509)
+. |. ..+.+++|+|+|++|++| .||+|++||+.++.. ...
T Consensus 121 ---------------------------l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ 172 (588)
T 2j04_A 121 ---------------------------LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFES 172 (588)
T ss_dssp ---------------------------CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEE
T ss_pred ---------------------------cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeee
Confidence 12 22 258999999999999999 999999999997642 111
Q ss_pred EeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE
Q 043890 267 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (509)
.+ + ....+|...|.+++|+|++ +++++.|+.|++||+..+.. .+..+++. .+|...|.+++|
T Consensus 173 ti--~-~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~-~~~~~tL~-----------~~h~~~V~svaF 234 (588)
T 2j04_A 173 SI--R-LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH-QPVSRMIQ-----------NASRRKITDLKI 234 (588)
T ss_dssp EE--E-CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS-CCCEEEEE-----------CCCSSCCCCEEE
T ss_pred ee--e-cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc-ccceeeec-----------ccccCcEEEEEE
Confidence 10 0 1236688999999999995 88999999999999988762 11112332 123468999999
Q ss_pred ecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEE--cCCCCEEEEeeCCCcEEEEeC
Q 043890 347 AKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCL--SGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 347 s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~ 424 (509)
+ |..|++++++.|++||+.. .+......+|...+. ++.| +||+..|+++++||+ ++|..
T Consensus 235 s--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V~---------------~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 235 V--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLENFH---------------IIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp E--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSCCC---------------EEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred E--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCceEE---------------EEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9 6899998889999999985 343233336766654 8999 999999999999999 99998
Q ss_pred CCCceeeeeeccCCCceeEEEEcCCCCCCcc-cceeeEeecCCCCCcccCCCccc---ccccceEEEEEcCCCcEEEEEe
Q 043890 425 APGSTEATTLEASKNPMRRQVQTPSRPSRSL-SSITRVVRRGSDVPGVDTNGNSF---DFTTKLLHLAWHPTENSIACAA 500 (509)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~la~~~ 500 (509)
+. +.++|++.-... ....+.|+ ..+..+ .....|.+++|+|||+.+|+++
T Consensus 296 d~-----------------~~~spd~~l~a~~d~~v~lW~---------~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 296 DE-----------------LHVTADNIIAPYLEKKFKKWS---------TIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SS-----------------EEEECCCSSHHHHHHHHHHTT---------TTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred cc-----------------EEECCCceEEEEcCCEEEEEE---------CCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 71 345666544211 12222222 222211 2245699999999999999988
Q ss_pred c
Q 043890 501 A 501 (509)
Q Consensus 501 ~ 501 (509)
.
T Consensus 350 ~ 350 (588)
T 2j04_A 350 D 350 (588)
T ss_dssp E
T ss_pred e
Confidence 6
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=264.88 Aligned_cols=281 Identities=16% Similarity=0.183 Sum_probs=205.2
Q ss_pred ceecccceEEEEECCC---CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 36 EVQEVDIISAIEFDKT---GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~---~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
+.+|.+.|++++|+|+ |++||+|+.||.|+|||+.+... .....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc-------
Confidence 3469999999999999 69999999999999999987332 1136677888
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|++++| +|++++|++++.||.|++||+.+++...
T Consensus 87 -----~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------- 122 (368)
T 3mmy_A 87 -----GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------- 122 (368)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred -----CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCcee-------------------------------------
Confidence 78999999 9999999999999999999998765221
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEE--CCCCCEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
...|...|.+++| ++++++|+++ .||.|++||+++++....
T Consensus 123 ---------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--- 166 (368)
T 3mmy_A 123 ---------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV--- 166 (368)
T ss_dssp ---------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE---
T ss_pred ---------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE---
Confidence 2568889999999 9999999999 899999999998765432
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
+..+ ..+.++.+.+ ..+++++.++.+++||++..... ....... +...+.++.+.++
T Consensus 167 -----~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 167 -----LQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSE---FRRIESP-----------LKHQHRCVAIFKD 223 (368)
T ss_dssp -----EECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEE---EEECCCS-----------CSSCEEEEEEEEC
T ss_pred -----EecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccch---hhhcccc-----------ccCCCceEEEccc
Confidence 2222 3566666664 46888899999999999876521 1111110 1134566666655
Q ss_pred CCE----EEEec-CCeEEEEECCCCC--CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEE
Q 043890 350 GRH----ILSRD-YMTLKLWDINMDS--GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVF 422 (509)
Q Consensus 350 ~~~----l~s~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 422 (509)
... +++++ ++.|++||++... ..+..+..|...........+ ...|.+++|+|++++|++++.||.|++|
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD---IYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE---ECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc---ccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 543 77765 6999999999632 345666666542110000000 0123489999999999999999999999
Q ss_pred eCCCCceeeeeeccCCCceeEEEEcCCCC
Q 043890 423 GCAPGSTEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
|+.+++++. .+.+|..++..++|+|++.
T Consensus 301 d~~~~~~~~-~~~~~~~~v~~~~~s~~g~ 328 (368)
T 3mmy_A 301 DKDARTKLK-TSEQLDQPISACCFNHNGN 328 (368)
T ss_dssp ETTTTEEEE-ECCCCSSCEEEEEECTTSS
T ss_pred ECCCCcEEE-EecCCCCCceEEEECCCCC
Confidence 999999887 7777765544444444433
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.2e-33 Score=262.37 Aligned_cols=273 Identities=14% Similarity=0.168 Sum_probs=207.4
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|++++|+|++++||+|+.||.|++||+.+... .......+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 346999999999999999999999999999999987643 112356677888
Q ss_pred hhccceeeEEEEcC--CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 116 IEEKINKIRWCQTA--NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 116 ~~~~v~~l~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|++++| +| ++++|++++.||.|++||+.++.......
T Consensus 58 --~~v~~~~~--~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~----------------------------------- 98 (351)
T 3f3f_A 58 --SSIVAIDW--ASPEYGRIIASASYDKTVKLWEEDPDQEECSGR----------------------------------- 98 (351)
T ss_dssp --SCEEEEEE--CCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC-----------------------------------
T ss_pred --CcEEEEEE--cCCCCCCEEEEEcCCCeEEEEecCCCccccccc-----------------------------------
Confidence 78999999 77 68999999999999999998764211100
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEe--
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIV-- 268 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~-- 268 (509)
...+... +..|...|.+++|+|+ +++|+++ .||.|++||+++.+....+.
T Consensus 99 ------------------------~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 99 ------------------------RWNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp ------------------------SEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred ------------------------Ccceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 0011222 3678999999999999 9999999 99999999998866432110
Q ss_pred ---eccCCccCCCccceEEEEEeCC---CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEE
Q 043890 269 ---DVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASIS 342 (509)
Q Consensus 269 ---~~~~~~~~~~~~~i~~l~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 342 (509)
.........|...+.+++|+|+ + .++++++.++.+.+|+...++.. .... +.+|...|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~h~~~i~ 218 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAK------------LPGHKSLIR 218 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEE------------CCCCCSCEE
T ss_pred ccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeee------------cCCCCccee
Confidence 0011122367889999999997 6 89999999999988887776521 1122 334558999
Q ss_pred EEEEecCC----CEEEEec-CCeEEEEECCCCC---------------------------------------------Cc
Q 043890 343 DIKFAKDG----RHILSRD-YMTLKLWDINMDS---------------------------------------------GP 372 (509)
Q Consensus 343 ~~~~s~~~----~~l~s~~-~~~i~iwd~~~~~---------------------------------------------~~ 372 (509)
+++|+|++ ++|++++ |+.|++||++... .+
T Consensus 219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 99999998 7888876 5999999998521 12
Q ss_pred eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 373 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+..+.+|... |.+++|+|++++|++++.||.|++|++.+++.+.
T Consensus 299 ~~~~~~h~~~---------------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 299 LSEHDDHNGE---------------VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEEECTTSSC---------------EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred EEEEeccccc---------------EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 2223333333 3499999999999999999999999999876554
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-33 Score=266.95 Aligned_cols=252 Identities=16% Similarity=0.299 Sum_probs=200.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
|...|.+++|+|++++||+|+.||.|++||+.+++. ...+.+|. .
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~------------~ 177 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------------------LRTMAGHQ------------A 177 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS------------S
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------------------EEEecCCC------------C
Confidence 789999999999999999999999999999988776 67778888 7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.++.| ++++|++++.||.|++||+......
T Consensus 178 ~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------------- 209 (401)
T 4aez_A 178 RVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQ-------------------------------------------- 209 (401)
T ss_dssp CEEEEEE----ETTEEEEEETTSEEEEEETTSSSCE--------------------------------------------
T ss_pred ceEEEEE----CCCEEEEEcCCCCEEEEecccCcce--------------------------------------------
Confidence 8999999 4569999999999999999743210
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
... +.+|...|.+++|+|++++|+++ .|+.|++||+++.+... .+..
T Consensus 210 -----------------------~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--------~~~~ 257 (401)
T 4aez_A 210 -----------------------IGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF--------TKTN 257 (401)
T ss_dssp -----------------------EEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE--------EECC
T ss_pred -----------------------eeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE--------EecC
Confidence 011 36788999999999999999999 89999999999866543 4567
Q ss_pred CccceEEEEEeCCCCcEEEEEE--cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 278 LTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
|...|.+++|+|++..++++++ .|+.|++||+++++. ...+... ..|.+++|+|+++++++
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~~~-------------~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVDAG-------------SQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEECS-------------SCEEEEEECSSSSEEEE
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEeCC-------------CcEEEEEECCCCCeEEE
Confidence 8999999999998867888876 799999999998764 3444322 57999999999999998
Q ss_pred --ec-CCeEEEEECCCCCCceE--EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 356 --RD-YMTLKLWDINMDSGPVA--TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 356 --~~-~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
|. ++.|++||+.+ ..... .+..|...+. +++|+|++++|++++.||.|++|++.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~v~---------------~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSS-SGLTKQVDIPAHDTRVL---------------YSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEET-TEEEEEEEEECCSSCCC---------------EEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCC-ccceeEEEecCCCCCEE---------------EEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 42 59999999986 33333 3456665543 8999999999999999999999999998877
Q ss_pred eeeeccCC
Q 043890 431 ATTLEASK 438 (509)
Q Consensus 431 ~~~~~~~~ 438 (509)
...+..+.
T Consensus 385 ~~~~~~~~ 392 (401)
T 4aez_A 385 KRPIPITK 392 (401)
T ss_dssp --------
T ss_pred cccccccC
Confidence 63333333
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-34 Score=288.39 Aligned_cols=370 Identities=14% Similarity=0.099 Sum_probs=255.7
Q ss_pred Ccceecccc-eEEEEECC--CCCeEEeecCCCeEEEEEccCC------C-CCCCccccccccccccccCCcceEEeeecc
Q 043890 34 GEEVQEVDI-ISAIEFDK--TGDHLATGDRGGRVVLFERTDT------K-DHGGSRRDLERMDYSTSRHPEFRYKTEFQS 103 (509)
Q Consensus 34 ~~~~~h~~~-I~~v~~s~--~~~~la~g~~dg~i~lw~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (509)
..+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ + .....+..+...+..+.++|+...+.....
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 344569999 99999999 9999999999999999999754 1 112233334556666777776543321111
Q ss_pred CCc---------chhhccch-hhhccceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCc
Q 043890 104 HEP---------EFDYLKSL-EIEEKINKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNV 172 (509)
Q Consensus 104 h~~---------~~~~~~~~-~~~~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (509)
... ....+..+ .+...|.+++| +|+++ ++++++.|+.|++||+.+++.......
T Consensus 137 ~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~------------- 201 (615)
T 1pgu_A 137 GRDNFGVFISWDSGNSLGEVSGHSQRINACHL--KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT------------- 201 (615)
T ss_dssp CSSCSEEEEETTTCCEEEECCSCSSCEEEEEE--CSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-------------
T ss_pred CCCCccEEEEEECCCcceeeecCCccEEEEEE--CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-------------
Confidence 000 00001111 23378999999 99998 799999999999999988765543322
Q ss_pred ccCCC---CccCCccccC-CCCCcceecCCCCCCCccccccccccccceeeeeeeeeec---ccccCeEEEEECCCCCEE
Q 043890 173 ASSSN---NVSPKPYLAN-GGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAH---AHDYHINSISNNSDGETF 245 (509)
Q Consensus 173 ~~~~~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l 245 (509)
+.. ....+.|+|+ ++. +++++.++.|++||+.+.... ..+.. .|...|.+++|+ ++++|
T Consensus 202 --~~~~~~~v~~~~~~~~~~~~-----l~~~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 202 --HHKQGSFVRDVEFSPDSGEF-----VITVGSDRKISCFDGKSGEFL------KYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp --SSCTTCCEEEEEECSTTCCE-----EEEEETTCCEEEEETTTCCEE------EECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred --cCCCCceEEEEEECCCCCCE-----EEEEeCCCeEEEEECCCCCEe------EEecccccccCCceEEEEEc-CCCEE
Confidence 222 3456778888 654 355677889999998764432 22224 789999999999 99999
Q ss_pred EEE-cCCeEEEEEccCCCceeeEeec---------------------------------c----CCccCC----------
Q 043890 246 ISA-DDLRINLWNLEISNQSFNIVDV---------------------------------K----PANMED---------- 277 (509)
Q Consensus 246 ~~~-~dg~i~iwd~~~~~~~~~~~~~---------------------------------~----~~~~~~---------- 277 (509)
+++ .|+.|++||+++++....+... . ...+..
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 999 8999999999865433221100 0 011223
Q ss_pred -----------------------CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCccc-------------------
Q 043890 278 -----------------------LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALC------------------- 315 (509)
Q Consensus 278 -----------------------~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------- 315 (509)
|...|.+++| +++ ..|++++.|+.|++||++.++..
T Consensus 348 ~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 348 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 4445555555 334 67788888888888877643210
Q ss_pred ----------------------------------------CCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 316 ----------------------------------------DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 316 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
...++.++..........+..|...|.+++|+|++++|++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 505 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 505 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE
Confidence 0011111111000000345668889999999999999999
Q ss_pred ec-CCeEEEEECCCCCCceEEEee-cccccccccccccCCCccceeeEEEcC----------CCCEEEEeeCCCcEEEEe
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQV-HEYLRPKLCDLYENDSIFDKFECCLSG----------DGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iw~ 423 (509)
++ |+.|++||+.+ .+++..+.. |...+. +++|+| ++++|++++.||.|++||
T Consensus 506 ~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~---------------~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 506 GDVMGKILLYDLQS-REVKTSRWAFRTSKIN---------------AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp EETTSCEEEEETTT-TEEEECCSCCCSSCEE---------------EEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred cCCCCeEEEeeCCC-CcceeEeecCCCCcee---------------EEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 86 59999999996 667666666 665544 999999 999999999999999999
Q ss_pred CCCC-ceeeeeeccCCCceeEEEEcCCCC
Q 043890 424 CAPG-STEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 424 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
+.++ +++. .+.+|..+|..++|+|++.
T Consensus 570 ~~~~~~~~~-~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 570 VKRPMKIIK-ALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp SSCTTCCEE-ETTSSTTCEEEEEEEETTE
T ss_pred CCCCceech-hhhcCccceEEEEEcCCCC
Confidence 9988 6666 8999999999999999876
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.7e-33 Score=265.80 Aligned_cols=256 Identities=19% Similarity=0.304 Sum_probs=207.9
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+|.+.|++|+|+|+|++||+|+.||.|+|||+.+++. +..+.+|.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----------------------~~~~~~h~------------ 189 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------------------LRNMTSHS------------ 189 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS------------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------------------EEEEeCCC------------
Confidence 5788999999999999999999999999999998877 77888898
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.++.| ++.+|++++.|+.+++||.......
T Consensus 190 ~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~------------------------------------------- 222 (420)
T 4gga_A 190 ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHH------------------------------------------- 222 (420)
T ss_dssp SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCE-------------------------------------------
T ss_pred CceEEEee----CCCEEEEEeCCCceeEeeeccccee-------------------------------------------
Confidence 67888887 5679999999999999998754211
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
... +.+|...+..+.++|++++++++ .|+.+++|+..+++..... .....
T Consensus 223 ------------------------~~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~ 273 (420)
T 4gga_A 223 ------------------------VAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFT 273 (420)
T ss_dssp ------------------------EEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEEC
T ss_pred ------------------------eEE-ecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeec
Confidence 111 37888999999999999999999 9999999999876532211 12456
Q ss_pred CCccceEEEEEeCCCCcEEEEEE--cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.|...|.+++|+|.+..++++++ .|+.|++||+++++. ...+..+ ..+.++.|+|+++.++
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~-------------~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAH-------------SQVCSILWSPHYKELI 336 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECS-------------SCEEEEEEETTTTEEE
T ss_pred ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeeccc-------------cceeeeeecCCCCeEE
Confidence 78899999999998877877654 799999999999874 3444333 4789999999999888
Q ss_pred Ee---cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 355 SR---DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 355 s~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
++ .|+.|+|||+.+ .+++..+.+|...+. +++|+|||++|++|+.|++|+|||+.+..+..
T Consensus 337 ~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V~---------------~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVL---------------SLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EEECTTTCCEEEEETTT-CCEEEEECCCSSCEE---------------EEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred EEEecCCCEEEEEECCC-CcEEEEEcCCCCCEE---------------EEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 75 259999999997 788999999987755 99999999999999999999999998766555
Q ss_pred eeeccCC
Q 043890 432 TTLEASK 438 (509)
Q Consensus 432 ~~~~~~~ 438 (509)
..+.+.
T Consensus 401 -~~~~~~ 406 (420)
T 4gga_A 401 -RREREK 406 (420)
T ss_dssp -------
T ss_pred -hhhhcc
Confidence 444444
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-32 Score=264.26 Aligned_cols=267 Identities=15% Similarity=0.219 Sum_probs=211.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
..+....|+|++++||+|+.||.|++||+.+++. ...+.+|. +.|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-----------------------REIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-----------------------EEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-----------------------eeeccccc------------Ccc
Confidence 5556668899999999999999999999987765 56667888 889
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
++++| +|++++|++++.|+.|++||+.+++....
T Consensus 143 ~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------------- 176 (420)
T 3vl1_A 143 TKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPRT-------------------------------------------- 176 (420)
T ss_dssp EEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------
T ss_pred EEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------
Confidence 99999 99999999999999999999987642211
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 279 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++....+. ....+.
T Consensus 177 -------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~ 226 (420)
T 3vl1_A 177 -------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-----RKENPH 226 (420)
T ss_dssp -------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-----BTTBTT
T ss_pred -------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee-----cCCCCC
Confidence 36789999999999999999999 89999999999876544321 112233
Q ss_pred c---------------------ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc
Q 043890 280 E---------------------VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 280 ~---------------------~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
. .+.+++|+|++ ++|++++.||.|++||+++++. ...+. ..|.
T Consensus 227 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~-----------~~~~ 290 (420)
T 3vl1_A 227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQ----TIQLP-----------SKFT 290 (420)
T ss_dssp CCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCE----EEEEC-----------CTTS
T ss_pred CCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCce----eEEcc-----------cccC
Confidence 3 44445557887 8999999999999999998763 22222 2244
Q ss_pred ccEEEEEEecCCC-EEEEec-CCeEEEEECCCCCCceEEEeecc-cccccccccccCCCccceeeEEEcCCCCEEEEeeC
Q 043890 339 ASISDIKFAKDGR-HILSRD-YMTLKLWDINMDSGPVATFQVHE-YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 339 ~~i~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
..|.+++|+|+++ +|++++ |+.|++||+++...++..+..|. ..+. .+ +.+++++|++++.
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~---------------~~-~~~~~~~l~s~~~ 354 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN---------------NV-YFAAGALFVSSGF 354 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE---------------EE-EEETTEEEEEETT
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce---------------EE-EeCCCCEEEEecC
Confidence 7899999999999 888876 59999999997556677777743 3322 55 5568899999999
Q ss_pred CCcEEEEeCCCC---------ceeeeeeccCCCceeEEEEcCCCC
Q 043890 416 SNLFRVFGCAPG---------STEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 416 dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
|+.|++|++... .... .+..|...+..++|+|++.
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPT-FLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCE-EECCSSCCCCEEEEECCSS
T ss_pred CccEEEEeccCCCCCccceeccCcc-EEccCCcceEEEEEccCCC
Confidence 999999998863 2222 5667889999999999887
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.9e-33 Score=288.58 Aligned_cols=321 Identities=17% Similarity=0.212 Sum_probs=244.9
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++|+|++++||+|+.||.|++||+.+++. ...+.+|.
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~~~~~~~---------- 97 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------------------VVDFEAHP---------- 97 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------EEEEECCS----------
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEecCC----------
Confidence 346999999999999999999999999999999998876 67788888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
+.|++++| +|++++|++++.||.|++||+.++...
T Consensus 98 --~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~----------------------------------------- 132 (814)
T 3mkq_A 98 --DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWAL----------------------------------------- 132 (814)
T ss_dssp --SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEE-----------------------------------------
T ss_pred --CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceE-----------------------------------------
Confidence 78999999 999999999999999999999765210
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
... +.+|...|.+++|+| +++.|+++ .||.|++||++++.....+
T Consensus 133 --------------------------~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~------ 179 (814)
T 3mkq_A 133 --------------------------EQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------ 179 (814)
T ss_dssp --------------------------EEE-EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE------
T ss_pred --------------------------EEE-EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE------
Confidence 111 367888999999999 78899999 8999999999876654322
Q ss_pred ccCCCccceEEEEEeC--CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 274 NMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
...+...+.+++|+| ++ .+|++++.||.|++||+++++. +..+.. |...|.+++|+|+++
T Consensus 180 -~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~~------------~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 180 -TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEG------------HMSNVSFAVFHPTLP 241 (814)
T ss_dssp -ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEE----EEEEEC------------CSSCEEEEEECSSSS
T ss_pred -ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEcC------------CCCCEEEEEEcCCCC
Confidence 233458899999999 87 8999999999999999988763 344433 447899999999999
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCE-EEEeeCCCcEEEEeCCCCce
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR-VATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~ 429 (509)
+|++++ ||.|++||+.+ .+.+..+..+...+. +++|+|+++. +++++.++.+.+|++..+..
T Consensus 242 ~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSST-YKVEKTLNVGLERSW---------------CIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEEETTSCEEEEETTT-CSEEEEECCSSSSEE---------------EEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EEEEEeCCCeEEEEECCC-CcEEEEeecCCCcEE---------------EEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 999986 59999999996 677777777665443 8999999873 24445567788888764322
Q ss_pred ee------------------------------------------eeeccCCCceeEEEEcCCCCCCcccceeeEeecCCC
Q 043890 430 EA------------------------------------------TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSD 467 (509)
Q Consensus 430 ~~------------------------------------------~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 467 (509)
.. ..+..+...+..++|+|++....+.. ...
T Consensus 306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-------~~~ 378 (814)
T 3mkq_A 306 TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-------DGE 378 (814)
T ss_dssp CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-------TTE
T ss_pred eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-------CCE
Confidence 11 01123445678899999887543221 112
Q ss_pred CCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 468 VPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 468 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+..+++......+...|.+++|+|++++||+++. +.+++|.
T Consensus 379 ~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 379 YVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp EEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred EEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 2223333222233567889999999999998877 7788884
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-33 Score=266.83 Aligned_cols=275 Identities=14% Similarity=0.176 Sum_probs=207.0
Q ss_pred eEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 43 ISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 43 I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
...++++|+.. ++++|+.||.|+||++........ ....+.+|. +.|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------------------~~~~~~~h~------------~~V~ 85 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------------------NVPLVCGHT------------APVL 85 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-------------------TCCCBCCCS------------SCEE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-------------------CCceEecCC------------CCEE
Confidence 34688888864 445688899999999965432000 034567787 8899
Q ss_pred eeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 122 KIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 122 ~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
+++| +| ++++|++++.||.|++||+.++......
T Consensus 86 ~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------------------------------------- 120 (402)
T 2aq5_A 86 DIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------------------------------------------- 120 (402)
T ss_dssp EEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB-------------------------------------------
T ss_pred EEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc-------------------------------------------
Confidence 9999 89 8999999999999999999876422100
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc--C
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANM--E 276 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~ 276 (509)
.++... +.+|...|.+++|+|++ ++|+++ .||.|++||+++++... .+ .
T Consensus 121 ------------------~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~ 173 (402)
T 2aq5_A 121 ------------------REPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL--------TLGPD 173 (402)
T ss_dssp ------------------CSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE--------EECTT
T ss_pred ------------------CCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE--------EEecC
Confidence 001111 37899999999999998 689998 89999999999876543 33 6
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeee-ccccCCCCccccccccc-cEEEEEEecCCCEEE
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILF-EEQEAPGSRSFFTEIIA-SISDIKFAKDGRHIL 354 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~ 354 (509)
.|...|.+++|+|++ ++|++++.|+.|++||+++++. +..+ ..+ .. .+.++.|+|++++|+
T Consensus 174 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTV----VAEKDRPH------------EGTRPVHAVFVSEGKILT 236 (402)
T ss_dssp TCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE----EEEEECSS------------CSSSCCEEEECSTTEEEE
T ss_pred CCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCce----eeeeccCC------------CCCcceEEEEcCCCcEEE
Confidence 789999999999998 9999999999999999998764 3444 222 23 388999999999999
Q ss_pred Ee---c-CCeEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeEEEcCCCCEEEE-eeCCCcEEEEeCCCCc
Q 043890 355 SR---D-YMTLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT-GSYSNLFRVFGCAPGS 428 (509)
Q Consensus 355 s~---~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~ 428 (509)
+| + ++.|++||+++...++.... .+...+ ..++|+|++++|++ ++.||.|++|++.+++
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EeccCCCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 98 4 59999999997444444433 233222 28999999999975 5579999999999887
Q ss_pred e-eeeeecc--CCCceeEEEEcCCCCCC
Q 043890 429 T-EATTLEA--SKNPMRRQVQTPSRPSR 453 (509)
Q Consensus 429 ~-~~~~~~~--~~~~v~~~~~s~~~~~~ 453 (509)
. +. .+.. |..++..++|+|++...
T Consensus 302 ~~~~-~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 302 PFLH-YLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp TCEE-EEEEECCSSCCSEEEECCGGGSC
T ss_pred cceE-eecccccCCcccceEEecccccc
Confidence 4 33 4444 44777888888776553
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-33 Score=260.34 Aligned_cols=244 Identities=16% Similarity=0.240 Sum_probs=188.1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|++++| ++++++|++|+.|++|++||+.++...
T Consensus 14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~------------------------------------------- 48 (316)
T 3bg1_A 14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQI------------------------------------------- 48 (316)
T ss_dssp CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEE-------------------------------------------
T ss_pred CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcE-------------------------------------------
Confidence 88999999 999999999999999999999765311
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+... +.+|...|.+++|++ ++++|+++ .|+.|++||++++..... ..
T Consensus 49 -----------------------~~~~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------~~ 98 (316)
T 3bg1_A 49 -----------------------LIAD-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------HE 98 (316)
T ss_dssp -----------------------EEEE-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE------EE
T ss_pred -----------------------EEEE-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE------EE
Confidence 1111 378999999999986 48899999 899999999987542111 14
Q ss_pred cCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC---
Q 043890 275 MEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD--- 349 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--- 349 (509)
+.+|...|.+++|+|+ + .+|++++.|+.|++||++..... .. ...+.+|...|.+++|+|+
T Consensus 99 ~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~---------~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 99 HAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EV---------KKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp ECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EE---------CCBTTSSSSCBCCCEECCCCCC
T ss_pred ccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----ce---------eeeeccccCCcceEEEccccCC
Confidence 5679999999999998 5 89999999999999999875310 00 0123445678999999997
Q ss_pred --------------CCEEEEec-CCeEEEEECCCCC--CceEEEeecccccccccccccCCCccceeeEEEcCCC----C
Q 043890 350 --------------GRHILSRD-YMTLKLWDINMDS--GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG----L 408 (509)
Q Consensus 350 --------------~~~l~s~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~ 408 (509)
+++|++|+ |+.|++||++... .++..+.+|...+. +++|+|++ +
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~---------------~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR---------------DVAWAPSIGLPTS 229 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE---------------EEECCCCSSCSCC
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE---------------EEEecCCCCCCCc
Confidence 46888876 6999999997522 24556777776644 99999987 8
Q ss_pred EEEEeeCCCcEEEEeCCCCce---eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceE
Q 043890 409 RVATGSYSNLFRVFGCAPGST---EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLL 485 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 485 (509)
+|++++.|++|+||++.+... ....+.. |...|.
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-------------------------------------------~~~~v~ 266 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHK-------------------------------------------FNDVVW 266 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEEE-------------------------------------------CSSCEE
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhhc-------------------------------------------CCCcEE
Confidence 899999999999999876321 1101222 246788
Q ss_pred EEEEcCCCcEEEEEec-CceEEEe
Q 043890 486 HLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 486 ~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
+++|+|++++||+++. +.++||+
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9999999999988877 7888886
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-32 Score=265.39 Aligned_cols=269 Identities=14% Similarity=0.307 Sum_probs=216.0
Q ss_pred ecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 38 QEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+|...|.|++| ++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-----------------------~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-----------------------KRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-----------------------EEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-----------------------EEEEcCCC------------
Confidence 46778999887 789999999999999999988876 67788898
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|.+++| ++++|++|+.||.|++||+.+++....
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------------------- 208 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT----------------------------------------- 208 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 78999988 778999999999999999987653221
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
+.+|...|.+++|++ +.++++ .||.|++||+++....... ..+.
T Consensus 209 ----------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~ 253 (435)
T 1p22_A 209 ----------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLV 253 (435)
T ss_dssp ----------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEEC
T ss_pred ----------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEec
Confidence 367888999999974 588888 9999999999986643211 2457
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
+|...|.+++| ++ +++++++.||.|++||+++++. +..+.. |...|.++.|+ +.++++|
T Consensus 254 ~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~----~~~~~~------------~~~~v~~~~~~--~~~l~~g 312 (435)
T 1p22_A 254 GHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEF----VRTLNG------------HKRGIACLQYR--DRLVVSG 312 (435)
T ss_dssp CCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCE----EEEEEC------------CSSCEEEEEEE--TTEEEEE
T ss_pred CCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcE----EEEEcC------------CCCcEEEEEeC--CCEEEEE
Confidence 79999999999 45 7999999999999999998764 444443 34789999884 6788887
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc-------
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS------- 428 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------- 428 (509)
+ |+.|++||+++ ++++..+.+|...+. +++| ++++|++|+.||.|++||+.+++
T Consensus 313 ~~dg~i~iwd~~~-~~~~~~~~~h~~~v~---------------~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 374 (435)
T 1p22_A 313 SSDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG 374 (435)
T ss_dssp ETTSCEEEEETTT-CCEEEEECCCSSCEE---------------EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred eCCCeEEEEECCC-CCEEEEEeCCcCcEE---------------EEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc
Confidence 5 69999999997 788888888876644 7777 88999999999999999987654
Q ss_pred --eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceE
Q 043890 429 --TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLY 505 (509)
Q Consensus 429 --~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~ 505 (509)
.+. .+.+| ...|.+++| ++.+|++++. +.++
T Consensus 375 ~~~~~-~~~~h-------------------------------------------~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 375 TLCLR-TLVEH-------------------------------------------SGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp TTEEE-EECCC-------------------------------------------SSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred chhee-eccCC-------------------------------------------CCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 333 33333 356777787 6777887775 7888
Q ss_pred EEe
Q 043890 506 MYY 508 (509)
Q Consensus 506 v~~ 508 (509)
+|+
T Consensus 409 iwd 411 (435)
T 1p22_A 409 IWD 411 (435)
T ss_dssp EEC
T ss_pred EEE
Confidence 886
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=290.02 Aligned_cols=258 Identities=14% Similarity=0.219 Sum_probs=202.9
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|++++|+|++++||+|+.||.|+|||+..... .....+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc----------
Confidence 356999999999999999999999999999999984322 1256788888
Q ss_pred hhccceeeEEEEcCC--CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 116 IEEKINKIRWCQTAN--GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
+.|++++| +++ +++|++++.||.|++||+.+++...
T Consensus 54 --~~V~~l~~--s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~-------------------------------------- 91 (753)
T 3jro_A 54 --GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQ-------------------------------------- 91 (753)
T ss_dssp --SCEEEEEE--CCTTSCSEEEEEETTSCEEEEEEETTEEEE--------------------------------------
T ss_pred --CceEEEEe--cCCCCCCEEEEEeCCCeEEEEECCCCcccc--------------------------------------
Confidence 88999999 766 9999999999999999998764111
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
... ..+|...|.+++|+|+ +++++++ .||.|++||+++......
T Consensus 92 ----------------------------~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~---- 138 (753)
T 3jro_A 92 ----------------------------IAV-HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---- 138 (753)
T ss_dssp ----------------------------EEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC----
T ss_pred ----------------------------ccc-ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce----
Confidence 111 3678899999999999 9999999 999999999997643322
Q ss_pred cCCccCCCccceEEEEEeCC-------------CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccc
Q 043890 271 KPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEI 337 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (509)
..+..|...|.+++|+|. + .+|++|+.||.|++||++++......... +.+|
T Consensus 139 --~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------~~~h 203 (753)
T 3jro_A 139 --IIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST------------LEGH 203 (753)
T ss_dssp --EEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE------------ECCC
T ss_pred --eEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee------------ecCC
Confidence 245678999999999994 5 89999999999999999887532111222 3345
Q ss_pred cccEEEEEEecC---CCEEEEec-CCeEEEEECCCCCCc----eEEEeecccccccccccccCCCccceeeEEEcCCCCE
Q 043890 338 IASISDIKFAKD---GRHILSRD-YMTLKLWDINMDSGP----VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR 409 (509)
Q Consensus 338 ~~~i~~~~~s~~---~~~l~s~~-~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 409 (509)
...|.+++|+|+ +++|++++ |+.|++||+.+.... ......|... |.+++|+|++++
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~l~~spdg~~ 268 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNV 268 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC---------------CCCEEECTTTCC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc---------------eEEEEEcCCCCE
Confidence 689999999999 89999986 599999999863221 1111223332 238999999999
Q ss_pred EEEeeCCCcEEEEeCCCCce
Q 043890 410 VATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~~~~ 429 (509)
|++++.||.|++|++.++..
T Consensus 269 l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 269 LALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEECSSSCEECCBCCSSSC
T ss_pred EEEEcCCCEEEEEecCCCCC
Confidence 99999999999999986543
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.7e-32 Score=254.15 Aligned_cols=271 Identities=17% Similarity=0.271 Sum_probs=205.9
Q ss_pred eeEEeeccccc--cccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceE
Q 043890 20 LEWKFSQVFGE--RTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRY 97 (509)
Q Consensus 20 ~~~~~~~~~~~--~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (509)
..|++...... .....+.+|.+.|.+++|+|++++|++|+.|+.|++|+......
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~----------------------- 120 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT----------------------- 120 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce-----------------------
Confidence 55887653211 11223456999999999999999999999999999999987765
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
......+. ..+..+.+ ++++++|++++.|+.+++||+.......
T Consensus 121 ~~~~~~~~------------~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~~---------------------- 164 (340)
T 4aow_A 121 TRRFVGHT------------KDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKYT---------------------- 164 (340)
T ss_dssp EEEEECCS------------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEE----------------------
T ss_pred eeeecCCC------------CceeEEEE--eecCccceeecCCCeEEEEEeCCCceEE----------------------
Confidence 34444554 55777888 8999999999999999999986543111
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC--CEEEEE-cCCeEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG--ETFISA-DDLRIN 254 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~dg~i~ 254 (509)
....+|...+..++|++++ .+++++ .|+.|+
T Consensus 165 ----------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~ 198 (340)
T 4aow_A 165 ----------------------------------------------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198 (340)
T ss_dssp ----------------------------------------------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred ----------------------------------------------EEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence 0126788889999998764 567788 899999
Q ss_pred EEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccc
Q 043890 255 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFF 334 (509)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (509)
+||+++.+... .+.+|...|++++|+|++ ++|++++.|+.|++||+++.+. +..+..+
T Consensus 199 i~d~~~~~~~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~--------- 256 (340)
T 4aow_A 199 VWNLANCKLKT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDGG--------- 256 (340)
T ss_dssp EEETTTTEEEE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECS---------
T ss_pred EEECCCCceee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecCC---------
Confidence 99999866442 457799999999999998 9999999999999999998764 3444433
Q ss_pred ccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 335 TEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 335 ~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
..+.+++|+|++.+++++.|+.|++||++. ...+..+..+..... ...+.. .|++++|+|++++|++|+
T Consensus 257 ----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~---~~~h~~---~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 257 ----DIINALCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS---SKAEPP---QCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp ----SCEEEEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC----------CCCC---CEEEEEECTTSSEEEEEE
T ss_pred ----ceEEeeecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee---ccCCCC---CEEEEEECCCCCEEEEEe
Confidence 479999999999988888889999999986 455544433211100 000111 244899999999999999
Q ss_pred CCCcEEEEeCCCCc
Q 043890 415 YSNLFRVFGCAPGS 428 (509)
Q Consensus 415 ~dg~i~iw~~~~~~ 428 (509)
.||.|+|||+.+|+
T Consensus 326 ~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 326 TDNLVRVWQVTIGT 339 (340)
T ss_dssp TTSCEEEEEEEC--
T ss_pred CCCEEEEEeCCCcC
Confidence 99999999999886
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.6e-33 Score=259.15 Aligned_cols=256 Identities=13% Similarity=0.119 Sum_probs=189.6
Q ss_pred eecccceEEEEECCCCCeEEe-----------ecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCC
Q 043890 37 VQEVDIISAIEFDKTGDHLAT-----------GDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHE 105 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~-----------g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 105 (509)
.+|.+.|.++++++ +.+++ |+.|+.+++|++....... ..........
T Consensus 70 ~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-------------------~~~~~~~~~~ 128 (365)
T 4h5i_A 70 EDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL-------------------EFLTSVDFDA 128 (365)
T ss_dssp CTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE-------------------EEEEEECSSC
T ss_pred cCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceE-------------------EEeeeeceee
Confidence 45788888887654 44544 4567889999987665400 0011111110
Q ss_pred cchhhccchhhhccceeeEEEEcCCCceEEEe--eCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCc
Q 043890 106 PEFDYLKSLEIEEKINKIRWCQTANGALFLLS--TNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKP 183 (509)
Q Consensus 106 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (509)
...++..+..++| +|||++++++ +.|++|+|||+.+++....
T Consensus 129 -------~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~~--------------------------- 172 (365)
T 4h5i_A 129 -------STNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKFE--------------------------- 172 (365)
T ss_dssp -------CCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEEE---------------------------
T ss_pred -------cCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEEE---------------------------
Confidence 1112256889999 9999998755 4689999999987653221
Q ss_pred cccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCc
Q 043890 184 YLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 263 (509)
Q Consensus 184 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~ 263 (509)
..|...|.+++|+|+|++++++.++.+.+|+..+++.
T Consensus 173 -------------------------------------------~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 173 -------------------------------------------IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp -------------------------------------------EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred -------------------------------------------eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 2466779999999999999999656677888877665
Q ss_pred eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC----eEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 264 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
.... ....|...|.+++|+|++ +++++++.|+ .+++||+..........+. +.+|..
T Consensus 210 ~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~ 270 (365)
T 4h5i_A 210 IARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ------------VTNRFK 270 (365)
T ss_dssp EEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE------------EESSCS
T ss_pred eeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeee------------ecCCCC
Confidence 4432 456788999999999998 9999999887 6888998776521111112 334557
Q ss_pred cEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEE-eecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 340 SISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
.|++++|+|||++||+|+ |+.|+|||+++ .+++..+ .+|...++ +++|+|||++||+|+.|+
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~---------------~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAIT---------------EVTISPDSTYVASVSAAN 334 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEE---------------EEEECTTSCEEEEEETTS
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEE---------------EEEECCCCCEEEEEeCCC
Confidence 899999999999999986 59999999997 6777764 67887755 999999999999999999
Q ss_pred cEEEEeCCCC
Q 043890 418 LFRVFGCAPG 427 (509)
Q Consensus 418 ~i~iw~~~~~ 427 (509)
+|+||++...
T Consensus 335 tvrvw~ip~~ 344 (365)
T 4h5i_A 335 TIHIIKLPLN 344 (365)
T ss_dssp EEEEEECCTT
T ss_pred eEEEEEcCCC
Confidence 9999999744
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=256.52 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=197.4
Q ss_pred eecccceEEEEECCC---CCeEEeecCCCeEEEEEccCCC-CCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 37 VQEVDIISAIEFDKT---GDHLATGDRGGRVVLFERTDTK-DHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~---~~~la~g~~dg~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.+|.+.|.+++|+|+ +++|++|+.||.|++||+.+.+ . ...+.+|.
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~------- 111 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP-----------------------VYSVKGHK------- 111 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC-----------------------SEEECCCS-------
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc-----------------------EEEEEecc-------
Confidence 469999999999999 7999999999999999999876 4 46677887
Q ss_pred chhhhccceeeEEE----EcCCCceEEEeeCCCeEEEEeccchh-hhhhhccCCCCCcccCCCCcccCCCCccCCccccC
Q 043890 113 SLEIEEKINKIRWC----QTANGALFLLSTNDKTIKFWKVQEKK-VKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLAN 187 (509)
Q Consensus 113 ~~~~~~~v~~l~~~----~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (509)
..|.++.|. +++++++|++++.||.|++||+.+++ .......
T Consensus 112 -----~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---------------------------- 158 (357)
T 3i2n_A 112 -----EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP---------------------------- 158 (357)
T ss_dssp -----SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC----------------------------
T ss_pred -----cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc----------------------------
Confidence 779999663 27899999999999999999998764 1111000
Q ss_pred CCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEE----ECCCCCEEEEE-cCCeEEEEEccCCC
Q 043890 188 GGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSIS----NNSDGETFISA-DDLRINLWNLEISN 262 (509)
Q Consensus 188 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~~~~~~~l~~~-~dg~i~iwd~~~~~ 262 (509)
....+...+.+++ |+|++++|+++ .||.|++||+++.+
T Consensus 159 -------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 159 -------------------------------------VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp -------------------------------------CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred -------------------------------------cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 0011234677887 78999999999 89999999999866
Q ss_pred ceeeEeeccCCccCCCccceEEEEEeC---CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc
Q 043890 263 QSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA 339 (509)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (509)
.. ....|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+... .+.+|..
T Consensus 202 ~~---------~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~-------~~~~~~~ 260 (357)
T 3i2n_A 202 LR---------WETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFASV-------SEKAHKS 260 (357)
T ss_dssp EE---------EEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEEE-------EEECCSS
T ss_pred ee---------eecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceeee-------ccCCCcC
Confidence 42 2345788999999999 77 89999999999999999886532 222110 1234568
Q ss_pred cEEEEEEecCCC-EEEEec-CCeEEEEECCCCCC------------------ceEEEeecccccccccccccCCCcccee
Q 043890 340 SISDIKFAKDGR-HILSRD-YMTLKLWDINMDSG------------------PVATFQVHEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 340 ~i~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (509)
.|.+++|+|+++ +|++++ |+.|++||++.... ++..+..|...+.
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~--------------- 325 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS--------------- 325 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE---------------
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee---------------
Confidence 999999999998 788875 59999999986322 2444555554433
Q ss_pred eEEEcCCCCEEE-EeeCCCcEEEEeCCCCce
Q 043890 400 ECCLSGDGLRVA-TGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 400 ~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~ 429 (509)
+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999999998 899999999999987653
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.8e-33 Score=260.99 Aligned_cols=262 Identities=14% Similarity=0.179 Sum_probs=201.3
Q ss_pred cccceEEEEECCC----CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 39 EVDIISAIEFDKT----GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 39 h~~~I~~v~~s~~----~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
|...|.+++|+|+ +++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------------------~~~~~~~~--------- 115 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----------------------IKHYVGHG--------- 115 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----------------------EEEEESCC---------
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----------------------eeeecCCC---------
Confidence 6788999999999 67999999999999999998776 67788888
Q ss_pred hhhccceeeEEEEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.+++| +| ++++|++++.||.|++||+.+++......
T Consensus 116 ---~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------------- 155 (366)
T 3k26_A 116 ---NAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG----------------------------------- 155 (366)
T ss_dssp ---SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEEC-----------------------------------
T ss_pred ---CcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEec-----------------------------------
Confidence 78999999 88 89999999999999999998765322200
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee---
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD--- 269 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~--- 269 (509)
. +.+|...|.+++|+|++++|+++ .||.|++||+++.+....+..
T Consensus 156 ------------------------------~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 156 ------------------------------G-VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp ------------------------------S-TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred ------------------------------c-cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 0 15688899999999999999999 899999999987543211100
Q ss_pred -----------------ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc-CCCCc
Q 043890 270 -----------------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE-APGSR 331 (509)
Q Consensus 270 -----------------~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 331 (509)
........|...|.+++|+ + ++|++++.|+.|++||+++..... ..+.... .....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~ 278 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTIL 278 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEE
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchhee
Confidence 0001223488999999999 4 799999999999999998875311 1111110 00112
Q ss_pred cccccccccEEEEEEecC--CCEEEEec-CCeEEEEECCCCCCc----eEEEeec--ccccccccccccCCCccceeeEE
Q 043890 332 SFFTEIIASISDIKFAKD--GRHILSRD-YMTLKLWDINMDSGP----VATFQVH--EYLRPKLCDLYENDSIFDKFECC 402 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~--~~~l~s~~-~~~i~iwd~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~ 402 (509)
..+..|...|.+++|+|+ +++|++++ ++.|++||+.+ .++ ...+..| ... |.+++
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~---------------v~~~~ 342 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAA---------------IRQTS 342 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSC---------------EEEEE
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCc---------------eEEEE
Confidence 234556688999999999 99999986 59999999996 443 2355555 233 33999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCC
Q 043890 403 LSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 403 ~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
|+|++++|++++.||.|++||+.
T Consensus 343 ~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 343 FSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC-
T ss_pred eCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999999986
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-33 Score=266.81 Aligned_cols=305 Identities=11% Similarity=0.177 Sum_probs=225.9
Q ss_pred EECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee-ccCCcchhhccchhhhccceeeEE
Q 043890 47 EFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRW 125 (509)
Q Consensus 47 ~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~l~~ 125 (509)
.|+|+++.++++. .|+.. ++. +..+ .+|. +.|++++|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~-----------------------~~~~~~~h~------------~~V~~~~~ 71 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKL-----------------------IATLMENEP------------NSITSSAV 71 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCE-----------------------EEEECTTTT------------SCEEEEEE
T ss_pred hcCCccccccccc------ccccc-ceE-----------------------EeeeccCCC------------CceEEEEE
Confidence 4788888888766 36633 222 5666 7887 78999999
Q ss_pred EEcC-CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCc
Q 043890 126 CQTA-NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPS 204 (509)
Q Consensus 126 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 204 (509)
+| ++++|++|+.||.|++||+.+........
T Consensus 72 --s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------------------------------------------- 103 (437)
T 3gre_A 72 --SPGETPYLITGSDQGVIKIWNLKEIIVGEVYS---------------------------------------------- 103 (437)
T ss_dssp --ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS----------------------------------------------
T ss_pred --CCCCCCEEEEecCCceEEEeECcccccCcccc----------------------------------------------
Confidence 89 99999999999999999987632111000
Q ss_pred cccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEcc---CCCceeeEe--eccCCccCC-
Q 043890 205 LRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE---ISNQSFNIV--DVKPANMED- 277 (509)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~---~~~~~~~~~--~~~~~~~~~- 277 (509)
+ ....+|...|.+++|+|++++|+++ .||.|++||++ +++...... .+....+..
T Consensus 104 ----------------~--~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 165 (437)
T 3gre_A 104 ----------------S--SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNF 165 (437)
T ss_dssp ----------------C--SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGG
T ss_pred ----------------e--eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCc
Confidence 0 0013588999999999999999999 99999999995 333221110 000011122
Q ss_pred -CccceEEEE--EeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 278 -LTEVITSAE--FHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 278 -~~~~i~~l~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+...+.++. +++++ .+|++++.|+.|++||+++++. +..+..+ .|...|.+++|+|++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~----------~h~~~v~~~~~s~~~~~l~ 230 (437)
T 3gre_A 166 GKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLER----LQIIENS----------PRHGAVSSICIDEECCVLI 230 (437)
T ss_dssp SSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCE----EEEEECC----------GGGCCEEEEEECTTSCEEE
T ss_pred ccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCee----eEEEccC----------CCCCceEEEEECCCCCEEE
Confidence 566777777 55787 8999999999999999998764 4444431 1447899999999999999
Q ss_pred Eec-CCeEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeEEE----cCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFECCL----SGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+|+ |+.|++||+++ .+++..+. .|...+. +++| ++++.+|++++.||.|++||+.+++
T Consensus 231 s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~---------------~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 231 LGTTRGIIDIWDIRF-NVLIRSWSFGDHAPIT---------------HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEETTSCEEEEETTT-TEEEEEEBCTTCEEEE---------------EEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEcCCCeEEEEEcCC-ccEEEEEecCCCCceE---------------EEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 986 59999999997 67777765 4444433 7744 4578899999999999999999999
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
.+. .+.+|...+..+.++|++.... ...+.+ ..|...|++++|+ ++++|++++. +.|++|
T Consensus 295 ~~~-~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~--~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 295 CQY-AFINSDEQPSMEHFLPIEKGLE---------------ELNFCG--IRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp EEE-EEESSSSCCCGGGGSCBCSSGG---------------GCCCCC--CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred EEE-EEEcCCCCCccceecccccccc---------------cceecc--cccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 998 9999998888888888765420 001111 1256889999999 7788888886 999999
Q ss_pred eC
Q 043890 508 YA 509 (509)
Q Consensus 508 ~~ 509 (509)
+.
T Consensus 356 d~ 357 (437)
T 3gre_A 356 SL 357 (437)
T ss_dssp ET
T ss_pred EC
Confidence 84
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-32 Score=259.45 Aligned_cols=293 Identities=13% Similarity=0.157 Sum_probs=203.8
Q ss_pred CcceecccceEEEEECCC----C---CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCc
Q 043890 34 GEEVQEVDIISAIEFDKT----G---DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEP 106 (509)
Q Consensus 34 ~~~~~h~~~I~~v~~s~~----~---~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 106 (509)
..+.+|...|.+++|+|+ + ++|++|+.||.|++|++.+.+. +.......+..|..
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~------------------~~~~~~~~~~~~~~ 117 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE------------------TKKVIFEKLDLLDS 117 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT------------------TCCEEEEEECCSCT
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc------------------cccccceeeccccc
Confidence 344579999999999999 9 9999999999999999987764 01111355566620
Q ss_pred chhhccchhhhccceeeEEEEc----CCCce-EEEeeCCCeEEEEeccc------hhhhhhhccCCCCCcccCCCCcccC
Q 043890 107 EFDYLKSLEIEEKINKIRWCQT----ANGAL-FLLSTNDKTIKFWKVQE------KKVKKIADMNVDPSKAVGNGNVASS 175 (509)
Q Consensus 107 ~~~~~~~~~~~~~v~~l~~~~~----~~~~~-l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (509)
.. ....|.+++| + |++++ |++++.||.|++||+.+ ++....
T Consensus 118 ~~-------~~~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------- 169 (397)
T 1sq9_A 118 DM-------KKHSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW------------------- 169 (397)
T ss_dssp TG-------GGSCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC-------------------
T ss_pred cc-------CCCcEEEEEE--eeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec-------------------
Confidence 00 0167999999 7 89999 99999999999999987 432210
Q ss_pred CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEE
Q 043890 176 SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRIN 254 (509)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~ 254 (509)
.+.+. + .. .......|...+.+++|+|++ +|+++ .||.|+
T Consensus 170 ---------~~~~~---------------~------------~~--~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~ 210 (397)
T 1sq9_A 170 ---------SPTLE---------------L------------QG--TVESPMTPSQFATSVDISERG-LIATGFNNGTVQ 210 (397)
T ss_dssp ---------CCEEE---------------E------------EE--EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred ---------cCcce---------------e------------ee--eeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence 00000 0 00 000014577889999999999 99999 899999
Q ss_pred EEEccCCCceeeEeeccCCccCC---C---ccceEEEEEeCCCCcEEEEEEcC---CeEEEEECCCCcccCCceeeeccc
Q 043890 255 LWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDLRQSALCDSHAILFEEQ 325 (509)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~l~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~ 325 (509)
+||+++.+... .+.. | ...|.+++|+|++ ++|++++.| +.|++||+++++. +..+...
T Consensus 211 i~d~~~~~~~~--------~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~ 277 (397)
T 1sq9_A 211 ISELSTLRPLY--------NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER----IGSLSVP 277 (397)
T ss_dssp EEETTTTEEEE--------EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE----EEEECBC
T ss_pred EEECCCCceeE--------EEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc----cceeccC
Confidence 99999865443 3344 7 8999999999998 999999999 9999999998764 3444431
Q ss_pred cCCCC-ccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe------ecccccccc---cccccCCC
Q 043890 326 EAPGS-RSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ------VHEYLRPKL---CDLYENDS 394 (509)
Q Consensus 326 ~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~ 394 (509)
..+.. ......|...|.+++|+|++++|++++ |+.|++||+++ .+++..+. .|......- ..-.+..
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 355 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP- 355 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC-
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCC-
Confidence 10000 000111557899999999999999986 59999999997 67778877 440000000 0000011
Q ss_pred ccceeeEEEcCCC----------CEEEEeeCCCcEEEEeCCCCc
Q 043890 395 IFDKFECCLSGDG----------LRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 395 ~~~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~~ 428 (509)
.|.+++|+|++ ++|++++.||.|++|++.+|+
T Consensus 356 --~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 356 --GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp --CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred --ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 23499999998 799999999999999998763
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-31 Score=257.53 Aligned_cols=283 Identities=14% Similarity=0.204 Sum_probs=217.7
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++|+|++ +|++|+.||.|++||+.+++. ...+.+|.
T Consensus 158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~~h~---------- 203 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC-----------------------THVFEGHN---------- 203 (464)
T ss_dssp ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS----------
T ss_pred EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE-----------------------EEEECCCC----------
Confidence 34699999999999988 999999999999999998876 67788888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.+++|.+.+++++|++++.||.|++||+.++............ ......+.+.
T Consensus 204 --~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~~------ 259 (464)
T 3v7d_B 204 --STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----------------PLVFHTPEEN------ 259 (464)
T ss_dssp --SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS----------------SEEESCGGGC------
T ss_pred --CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc----------------ceEeeccCCC------
Confidence 7899999976688899999999999999999876533221110000 0000000000
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
..+... ..+|...+.++ ++++++++++ .||.|++||+++.+... .
T Consensus 260 -----------------------~~~~~~-~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~--------~ 305 (464)
T 3v7d_B 260 -----------------------PYFVGV-LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY--------I 305 (464)
T ss_dssp -----------------------TTEEEE-ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE--------E
T ss_pred -----------------------eEEEEE-ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE--------E
Confidence 001111 37788888877 4678999999 99999999999766543 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+.+|...|.+++|+|++ +++++++.|+.|++||+++++. +..+.. |...|.+++|+ +.+|+
T Consensus 306 ~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~------------h~~~v~~~~~~--~~~l~ 366 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTLQG------------HTALVGLLRLS--DKFLV 366 (464)
T ss_dssp ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECC------------CSSCEEEEEEC--SSEEE
T ss_pred ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEEeC------------CCCcEEEEEEc--CCEEE
Confidence 56799999999999998 9999999999999999998764 444443 44789999997 57888
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATT 433 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 433 (509)
+++ |+.|++||+.+ ........ +..... .++|++++++|++++ ||.|++||+.+++.+...
T Consensus 367 s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~~---------------~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 367 SAAADGSIRGWDAND-YSRKFSYH-HTNLSA---------------ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp EEETTSEEEEEETTT-CCEEEEEE-CTTCCC---------------EEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC
T ss_pred EEeCCCcEEEEECCC-Cceeeeec-CCCCcc---------------EEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh
Confidence 875 69999999996 34333332 222222 689999999999998 899999999999998845
Q ss_pred eccCCCceeEEEEc
Q 043890 434 LEASKNPMRRQVQT 447 (509)
Q Consensus 434 ~~~~~~~v~~~~~s 447 (509)
+..|..++..++|+
T Consensus 429 ~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 429 ILKDADQIWSVNFK 442 (464)
T ss_dssp TTTTCSEEEEEEEE
T ss_pred hccCCCcEEEEEec
Confidence 78899999999996
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=250.06 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=186.1
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceee
Q 043890 44 SAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 123 (509)
Q Consensus 44 ~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 123 (509)
....+.+++++||+|+.||.|++||+.+++. ...+. . ..|.++
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~-----------------------~~~~~--~------------~~v~~~ 82 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKT-----------------------ITTIT--T------------PNPRTG 82 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSC-----------------------EEEEE--E------------ECCCTT
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcE-----------------------EEEEe--c------------CCceee
Confidence 3344556889999999999999999998876 33333 1 568889
Q ss_pred EEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCC
Q 043890 124 RWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIP 203 (509)
Q Consensus 124 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 203 (509)
.| +|+ +++++.|++|++|+....
T Consensus 83 ~~--~~~---~~s~s~D~~i~~w~~~~~---------------------------------------------------- 105 (343)
T 3lrv_A 83 GE--HPA---IISRGPCNRLLLLYPGNQ---------------------------------------------------- 105 (343)
T ss_dssp CC--CCS---EEEECSTTEEEEEETTTE----------------------------------------------------
T ss_pred ee--CCc---eEEecCCCeEEEEEccCc----------------------------------------------------
Confidence 98 666 999999999999998753
Q ss_pred ccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCcc
Q 043890 204 SLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 280 (509)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
+.+|++.... ..+.+..+|...|.+++|+| ++++|+++ .||.|++||+++++.... ....+..
T Consensus 106 -~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------~~~~~~~ 171 (343)
T 3lrv_A 106 -ITILDSKTNK------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-------HSAKSDV 171 (343)
T ss_dssp -EEEEETTTCC------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-------ECCCSSC
T ss_pred -eEEeecCCcc------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-------EecCCCC
Confidence 2223322211 11222356778899999999 99999999 999999999998765321 1234566
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCe
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 360 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~ 360 (509)
.|.+++|+|++ .+|++|+.||.|++||+++++.. ...+.. +|...|.+++|+|++.+|++++++.
T Consensus 172 ~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~~~~-----------~h~~~v~~l~fs~~g~~l~s~~~~~ 236 (343)
T 3lrv_A 172 EYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQA---SSRFPV-----------DEEAKIKEVKFADNGYWMVVECDQT 236 (343)
T ss_dssp CCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSC---CEECCC-----------CTTSCEEEEEECTTSSEEEEEESSB
T ss_pred ceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccEEec-----------cCCCCEEEEEEeCCCCEEEEEeCCe
Confidence 79999999998 99999999999999999988641 123332 1458999999999999999988889
Q ss_pred EEEEECCCCCCceEEEee---cccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCCCCce
Q 043890 361 LKLWDINMDSGPVATFQV---HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCAPGST 429 (509)
Q Consensus 361 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~ 429 (509)
|++||+++ .+.+..+.. |...+.. .+++|+|++++|++++. |+.|+||++..+..
T Consensus 237 v~iwd~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 237 VVCFDLRK-DVGTLAYPTYTIPEFKTGT-------------VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEETTS-STTCBSSCCCBC-----CC-------------EEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEcCC-CCcceeecccccccccccc-------------eEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 99999997 455444332 2221110 15999999999999998 99999999976543
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-31 Score=255.28 Aligned_cols=237 Identities=14% Similarity=0.099 Sum_probs=173.4
Q ss_pred ccceeeEEEEcCCCceE-EEeeCCCeEEEEecc--chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALF-LLSTNDKTIKFWKVQ--EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
+.|++++| +|++++| ++++.||.|++||+. +++......
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 57999999 9999996 889999999999998 543221100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
...|...|.+++|+|++++|+++ .+|.|++|++.+...... ...
T Consensus 145 -------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~----~~~ 189 (450)
T 2vdu_B 145 -------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF----TQE 189 (450)
T ss_dssp -------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC----CCC
T ss_pred -------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc----cce
Confidence 12566789999999999999999 899999999987653210 002
Q ss_pred ccCCCccceEEEEEeCC---CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 274 NMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.+.+|...|.+++|+|+ + ++|++++.|+.|++||+++++. +..+ +.+|...|.+++|+ ++
T Consensus 190 ~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~----~~~~-----------~~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 190 PILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFI----VDKW-----------LFGHKHFVSSICCG-KD 252 (450)
T ss_dssp CSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTC----EEEE-----------CCCCSSCEEEEEEC-ST
T ss_pred eeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCce----eeee-----------ecCCCCceEEEEEC-CC
Confidence 56679999999999999 7 8999999999999999998763 2221 22455799999999 99
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeeccccccccccccc-----------CCCccceeeEEEcCCCCEEEEee-CCC
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE-----------NDSIFDKFECCLSGDGLRVATGS-YSN 417 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~-~dg 417 (509)
++|++++ |+.|++||+.+ ++++..+..+... ..+....+ ...-..|..++|+|++++|++++ .|+
T Consensus 253 ~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~ 330 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLI-KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK 330 (450)
T ss_dssp TEEEEEESSSEEEEEETTT-CCEEEEEECHHHH-GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred CEEEEEeCCCeEEEEECCC-CcEeeeecchhhh-hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence 9999986 59999999997 6777777644311 00000000 01112245899999999999998 899
Q ss_pred cEEEEeC--CCC---ceeeeeeccCCCceeEEEEcC
Q 043890 418 LFRVFGC--APG---STEATTLEASKNPMRRQVQTP 448 (509)
Q Consensus 418 ~i~iw~~--~~~---~~~~~~~~~~~~~v~~~~~s~ 448 (509)
.|+||++ .++ +.+. .+..| ..+..++|+|
T Consensus 331 ~i~iw~~~~~~~~~l~~~~-~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 331 CIIILEMSEKQKGDLALKQ-IITFP-YNVISLSAHN 364 (450)
T ss_dssp EEEEEEECSSSTTCEEEEE-EEECS-SCEEEEEEET
T ss_pred eEEEEEeccCCCCceeecc-EeccC-CceEEEEecC
Confidence 9999999 555 4443 45544 4444444444
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-33 Score=261.67 Aligned_cols=244 Identities=11% Similarity=0.095 Sum_probs=182.6
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|++++| +|++++|++++.|+.|++||+.++.....
T Consensus 12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~----------------------------------------- 48 (377)
T 3dwl_C 12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA----------------------------------------- 48 (377)
T ss_dssp SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence 67999999 99999999999999999999986521100
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.. +.+|...|.+++|+|++++|+++ .|+.|++||+++++..... ..+.
T Consensus 49 -------------------------~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~~~ 97 (377)
T 3dwl_C 49 -------------------------RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----LVLL 97 (377)
T ss_dssp -------------------------CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-----EECC
T ss_pred -------------------------EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-----eEec
Confidence 01 36789999999999999999999 8999999999986611111 2466
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.|...|.+++|+|++ ++|++++.|+.|++||++.++.. ...+.+.. .|...|.+++|+|++++|+++
T Consensus 98 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~-----------~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 98 RLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDW-WVSKHLKR-----------PLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp CCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----C-CCCEEECS-----------SCCSCEEEEEECTTSSEEEEE
T ss_pred ccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccc-eeeeEeec-----------ccCCCeEEEEEcCCCCEEEEE
Confidence 799999999999998 99999999999999999987521 11233332 145799999999999999998
Q ss_pred c-CCeEEEEECCCCC-----------------CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCc
Q 043890 357 D-YMTLKLWDINMDS-----------------GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL 418 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 418 (509)
+ |+.|++||+.... .++..+ .|... |.+++|+|++++|++++.||.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW---------------VHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS---------------EEEEEECTTSSCEEEEETTTE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce---------------EEEEEECCCCCEEEEEeCCCc
Confidence 6 5999999986311 112222 33333 339999999999999999999
Q ss_pred EEEEeCCCCce----eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc
Q 043890 419 FRVFGCAPGST----EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN 494 (509)
Q Consensus 419 i~iw~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 494 (509)
|++||+.+++. +. .+.+|. ..|.+++|+|+++
T Consensus 229 i~iwd~~~~~~~~~~~~-~~~~~~-------------------------------------------~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALI-TVKLSQ-------------------------------------------LPLRSLLWANESA 264 (377)
T ss_dssp EC-CEECSTTSCEEECC-CEECSS-------------------------------------------SCEEEEEEEETTE
T ss_pred EEEEECCCCCCcceeeE-eecCCC-------------------------------------------CceEEEEEcCCCC
Confidence 99999998876 43 444443 6688999999999
Q ss_pred EEEEEecCceEEEe
Q 043890 495 SIACAAANSLYMYY 508 (509)
Q Consensus 495 ~la~~~~~~i~v~~ 508 (509)
+|++++.+.+.+|+
T Consensus 265 ~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 265 IVAAGYNYSPILLQ 278 (377)
T ss_dssp EEEEESSSSEEEEC
T ss_pred EEEEEcCCcEEEEE
Confidence 99999888888885
No 95
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.5e-32 Score=261.95 Aligned_cols=263 Identities=11% Similarity=0.067 Sum_probs=184.3
Q ss_pred ceecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 36 EVQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
..+|.+.|++|+|+| ++++|++|+.||+|+|||+.+... ......|..
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-----------------------~~~~~~~~~-------- 208 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-----------------------RVFASSDTI-------- 208 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-----------------------EEEECCSSC--------
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-----------------------eEEeccCCC--------
Confidence 356999999999998 689999999999999999976543 122222221
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
...+.+++| ++++++|++|+.||.|++||++......
T Consensus 209 --~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~--------------------------------------- 245 (435)
T 4e54_B 209 --NIWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN--------------------------------------- 245 (435)
T ss_dssp --SCCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC---------------------------------------
T ss_pred --CccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE---------------------------------------
Confidence 145788999 9999999999999999999986432100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
+.+|...|.+++|+|++. +|+++ .|+.|++||+++.+....+
T Consensus 246 -------------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~----- 289 (435)
T 4e54_B 246 -------------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF----- 289 (435)
T ss_dssp -------------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----
T ss_pred -------------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----
Confidence 267889999999999876 67788 8999999999876543221
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcc-----ccccccccEEEEEEe
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRS-----FFTEIIASISDIKFA 347 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~s 347 (509)
....+|...|++++|+|++ ++|++++.|+.|++||++++.. ...+..+....... ........+..+.++
T Consensus 290 ~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 290 LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDC----PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSS----EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCcc----ceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence 2346799999999999998 9999999999999999998764 23332222110000 000011222333344
Q ss_pred cCCCEEEEe-cC-CeEEEEECCCCCCceEEEe-ecccccccccccccCCCccceeeE-EEcCCCCEEEEeeCCCcEEEEe
Q 043890 348 KDGRHILSR-DY-MTLKLWDINMDSGPVATFQ-VHEYLRPKLCDLYENDSIFDKFEC-CLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 348 ~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
+++..++++ .+ +.|++||..+ ++.+..+. .|...+. ++ +|+|+|++|++|+ |+.|+||+
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v~---------------s~~~fspdg~~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGIS---------------SLNEFNPMGDTLASAM-GYHILIWS 427 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCCC---------------CEEEECTTSSCEEEEC-SSEEEECC
T ss_pred CCCCeEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcEE---------------EEEEECCCCCEEEEEc-CCcEEEEE
Confidence 444443332 23 6799999997 56666654 3444332 55 6999999999876 78999999
Q ss_pred CCCCcee
Q 043890 424 CAPGSTE 430 (509)
Q Consensus 424 ~~~~~~~ 430 (509)
+++++..
T Consensus 428 ~~~gk~r 434 (435)
T 4e54_B 428 QQEARTR 434 (435)
T ss_dssp CC-----
T ss_pred CCcCeee
Confidence 9988653
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-31 Score=250.35 Aligned_cols=259 Identities=12% Similarity=0.163 Sum_probs=209.7
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++|+|++++|++++.||.|++||+.+++. ...+. |.
T Consensus 70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~-~~---------- 115 (369)
T 3zwl_B 70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-----------------------VATWK-SP---------- 115 (369)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEE-CS----------
T ss_pred hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEee-cC----------
Confidence 446999999999999999999999999999999998776 44444 44
Q ss_pred hhccceeeEEEEcCCCceEEEeeCC-----CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 116 IEEKINKIRWCQTANGALFLLSTND-----KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..|.+++| +|++++|++++.+ +.|++||+..............
T Consensus 116 --~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~---------------------------- 163 (369)
T 3zwl_B 116 --VPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE---------------------------- 163 (369)
T ss_dssp --SCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS----------------------------
T ss_pred --CCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc----------------------------
Confidence 67999999 9999999999999 9999999987653322110000
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeeccccc--CeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeE
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~ 267 (509)
..... +..|.. .+.+++|+|++++|+++ .||.|++||+++......
T Consensus 164 -----------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~- 212 (369)
T 3zwl_B 164 -----------------------------EPIHK-IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD- 212 (369)
T ss_dssp -----------------------------SCSEE-EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEE-
T ss_pred -----------------------------ceeee-ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEE-
Confidence 00001 134544 89999999999999999 999999999997443332
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+..|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+.. ...+..++|+
T Consensus 213 ------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~-------------~~~~~~~~~~ 268 (369)
T 3zwl_B 213 ------SIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQV----LKKYET-------------DCPLNTAVIT 268 (369)
T ss_dssp ------EEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEEC-------------SSCEEEEEEC
T ss_pred ------EEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCce----eeeecC-------------CCCceeEEec
Confidence 456688999999999998 9999999999999999998764 344432 2589999999
Q ss_pred cCCCEEEEec-CC--------------eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 348 KDGRHILSRD-YM--------------TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 348 ~~~~~l~s~~-~~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
|+++++++++ ++ .+++||+.+ .+++..+..|...+. +++|+|++++|++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~---------------~~~~s~~~~~l~s 332 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPLN---------------TVAISPQGTSYAS 332 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCEE---------------EEEECTTSSEEEE
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcEE---------------EEEECCCCCEEEE
Confidence 9999999975 35 899999997 788888888877654 8999999999999
Q ss_pred eeCCCcEEEEeCCCCceee
Q 043890 413 GSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 413 ~~~dg~i~iw~~~~~~~~~ 431 (509)
++.||.|++|+++++....
T Consensus 333 ~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 333 GGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EETTSEEEEEEECHHHHTC
T ss_pred EcCCCeEEEEECccccchh
Confidence 9999999999998765443
No 97
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-31 Score=256.24 Aligned_cols=268 Identities=17% Similarity=0.258 Sum_probs=202.2
Q ss_pred ceecccceEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 36 EVQEVDIISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
...|.+.|++++|+|+ +.+||+|+.+|.|++|++........ ..........+.+|.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~--------- 181 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ--------- 181 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS---------
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC---------
Confidence 4579999999999997 78999999999999999986322000 000012246677887
Q ss_pred hhhccceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.+++| +|++. +|++++.||.|++|++.++......
T Consensus 182 ---~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------------ 220 (430)
T 2xyi_A 182 ---KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHRV------------------------------------ 220 (430)
T ss_dssp ---SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGGE------------------------------------
T ss_pred ---CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCce------------------------------------
Confidence 78999999 89888 9999999999999999874311100
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
...... +.+|...|.+++|+| ++.+|+++ .||.|++||+++......+
T Consensus 221 -------------------------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~---- 270 (430)
T 2xyi_A 221 -------------------------IDAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS---- 270 (430)
T ss_dssp -------------------------EECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS----
T ss_pred -------------------------ecccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce----
Confidence 000111 367889999999999 67889898 8999999999976311110
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
..+..|...|++++|+|++..+|++|+.||.|++||++.... .+..+.. |...|.+++|+|+++
T Consensus 271 -~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~------------h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 271 -HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFES------------HKDEIFQVQWSPHNE 334 (430)
T ss_dssp -EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEC------------CSSCEEEEEECSSCT
T ss_pred -eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeec------------CCCCEEEEEECCCCC
Confidence 134578999999999999855899999999999999997542 1344433 447899999999985
Q ss_pred -EEEEec-CCeEEEEECCCCC-------------CceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEeeC
Q 043890 352 -HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSY 415 (509)
Q Consensus 352 -~l~s~~-~~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 415 (509)
+|++++ |+.|+|||+.... ..+..+.+|...+. +++|+|+++ +|++++.
T Consensus 335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------------~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS---------------DFSWNPNEPWIICSVSE 399 (430)
T ss_dssp TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE---------------EEEECSSSTTEEEEEET
T ss_pred CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce---------------EEEECCCCCCEEEEEEC
Confidence 577765 6999999998622 33444445544433 999999999 8999999
Q ss_pred CCcEEEEeCCCC
Q 043890 416 SNLFRVFGCAPG 427 (509)
Q Consensus 416 dg~i~iw~~~~~ 427 (509)
||.|+||++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999999743
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-31 Score=251.31 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=197.2
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.|++++| +|++++|++++.|+.|++||+.+++..
T Consensus 9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~------------------------------------------- 43 (372)
T 1k8k_C 9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWV------------------------------------------- 43 (372)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEE-------------------------------------------
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------------------------------
Confidence 78999999 999999999999999999999876411
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.... +.+|...|.+++|+|++++|+++ .||.|++||+++++.... ..+.
T Consensus 44 -----------------------~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~~ 93 (372)
T 1k8k_C 44 -----------------------QVHE-LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT------LVIL 93 (372)
T ss_dssp -----------------------EEEE-EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE------EECC
T ss_pred -----------------------eeee-ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee------EEee
Confidence 1111 36788999999999999999999 899999999987653322 1346
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.|...|.+++|+|++ ++|++++.|+.|++||++...... ....+ ...|...|.+++|+|++++|+++
T Consensus 94 ~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~-----------~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 94 RINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW-VCKHI-----------KKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE-EEEEE-----------CTTCCSCEEEEEECTTSSEEEEE
T ss_pred cCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcce-eeeee-----------ecccCCCeeEEEEcCCCCEEEEE
Confidence 788999999999998 999999999999999998875210 01111 12345789999999999999998
Q ss_pred c-CCeEEEEECCC-----------------CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCc
Q 043890 357 D-YMTLKLWDINM-----------------DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNL 418 (509)
Q Consensus 357 ~-~~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 418 (509)
+ ++.|++||++. ...++..+..|...+. +++|+|++++|++++.|+.
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~~~~~~~~~l~~~~~d~~ 225 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH---------------GVCFSANGSRVAWVSHDST 225 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE---------------EEEECSSSSEEEEEETTTE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEE---------------EEEECCCCCEEEEEeCCCE
Confidence 6 59999999642 1455556665655433 8999999999999999999
Q ss_pred EEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEE
Q 043890 419 FRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIAC 498 (509)
Q Consensus 419 i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~ 498 (509)
|++||+.+++.+. .+..|. .+|.+++|+|++.+|++
T Consensus 226 i~i~d~~~~~~~~-~~~~~~-------------------------------------------~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 226 VCLADADKKMAVA-TLASET-------------------------------------------LPLLAVTFITESSLVAA 261 (372)
T ss_dssp EEEEEGGGTTEEE-EEECSS-------------------------------------------CCEEEEEEEETTEEEEE
T ss_pred EEEEECCCCceeE-EEccCC-------------------------------------------CCeEEEEEecCCCEEEE
Confidence 9999999988877 666554 56889999999999999
Q ss_pred EecCceEEEe
Q 043890 499 AAANSLYMYY 508 (509)
Q Consensus 499 ~~~~~i~v~~ 508 (509)
+.++.+++|+
T Consensus 262 ~~d~~i~i~~ 271 (372)
T 1k8k_C 262 GHDCFPVLFT 271 (372)
T ss_dssp ETTSSCEEEE
T ss_pred EeCCeEEEEE
Confidence 9779999997
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7e-31 Score=252.37 Aligned_cols=273 Identities=17% Similarity=0.254 Sum_probs=193.9
Q ss_pred hhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 116 IEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
|.+.|++++| +|+ +.+|++++.||.|++|++.+...... +.+
T Consensus 127 h~~~v~~l~~--~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------~~~------ 169 (430)
T 2xyi_A 127 HEGEVNRARY--MPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------PSG------ 169 (430)
T ss_dssp ESSCCSEEEE--ETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------TTC------
T ss_pred CCCcEEEEEE--CCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------ccc------
Confidence 3388999999 886 67999999999999999976321100 000
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
. ..+... +.+|...+.+++|+|++. +|+++ .||.|++|+++.......... ..
T Consensus 170 -------------------~----~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~ 224 (430)
T 2xyi_A 170 -------------------E----CQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AK 224 (430)
T ss_dssp -------------------C----CCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CS
T ss_pred -------------------c----CCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cc
Confidence 0 000111 368899999999999988 99999 899999999987432111100 01
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR- 351 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~- 351 (509)
..+..|...|.+++|+|++..+|++++.|+.|++||+++.... ..+..+. .|...|++++|+|++.
T Consensus 225 ~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~------------~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 225 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTVD------------AHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEEE------------CCSSCEEEEEECSSCTT
T ss_pred eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEee------------cCCCCeEEEEeCCCCCC
Confidence 2456799999999999955589999999999999999986411 1123332 3457899999999987
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEeeCCCcEEEEeCCCCce
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~ 429 (509)
++++|+ ++.|++||+++...++..+..|...+. +++|+|+++ +|++++.|+.|+|||+.....
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~---------------~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIF---------------QVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEE---------------EEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEE---------------EEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 677775 599999999975677888888876654 999999995 699999999999999986322
Q ss_pred eeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc-EEEEEec-CceEEE
Q 043890 430 EATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN-SIACAAA-NSLYMY 507 (509)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~-~~i~v~ 507 (509)
.........++...+ .... .|...|.+++|+|+++ +|++++. +.++||
T Consensus 357 ~~~~~~~~~~~~~~~--------------------------~~~~----~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 357 EQSTEDAEDGPPELL--------------------------FIHG----GHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp CCCHHHHHHCCTTEE--------------------------EECC----CCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred ccCccccccCCcceE--------------------------EEcC----CCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 110000000000000 0001 2356799999999998 7777776 789999
Q ss_pred e
Q 043890 508 Y 508 (509)
Q Consensus 508 ~ 508 (509)
+
T Consensus 407 ~ 407 (430)
T 2xyi_A 407 Q 407 (430)
T ss_dssp E
T ss_pred E
Confidence 7
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=246.61 Aligned_cols=253 Identities=17% Similarity=0.239 Sum_probs=197.1
Q ss_pred EeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 98 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 98 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
...+.+|. +.|++++| +|++++|++++.||.|++||+.....
T Consensus 4 ~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~------------------------ 45 (379)
T 3jrp_A 4 VVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETH------------------------ 45 (379)
T ss_dssp -CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEE------------------------
T ss_pred cEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcc------------------------
Confidence 46678888 88999999 99999999999999999999974321
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRIN 254 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~ 254 (509)
.+.+. +.+|...|.+++|+++ +++|+++ .||.|+
T Consensus 46 ------------------------------------------~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 46 ------------------------------------------KLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp ------------------------------------------EEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ------------------------------------------eeeeE-ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 11112 3789999999999987 8999999 899999
Q ss_pred EEEccCCCceeeEeeccCCccCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcc
Q 043890 255 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRS 332 (509)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
+||+++++.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||++...... ...
T Consensus 83 iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~----------- 142 (379)
T 3jrp_A 83 IWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PII----------- 142 (379)
T ss_dssp EEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEE-----------
T ss_pred EEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEE-----------
Confidence 999998652211 245678999999999999 7 899999999999999999874311 112
Q ss_pred ccccccccEEEEEEec-------------CCCEEEEec-CCeEEEEECCCCCC---ceEEEeecccccccccccccCCCc
Q 043890 333 FFTEIIASISDIKFAK-------------DGRHILSRD-YMTLKLWDINMDSG---PVATFQVHEYLRPKLCDLYENDSI 395 (509)
Q Consensus 333 ~~~~~~~~i~~~~~s~-------------~~~~l~s~~-~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
+..|...|.+++|+| ++.+|++++ |+.|++||+++... ....+..|...+.
T Consensus 143 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~----------- 210 (379)
T 3jrp_A 143 -IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR----------- 210 (379)
T ss_dssp -EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE-----------
T ss_pred -ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEe-----------
Confidence 233457899999999 699999986 59999999986332 2345555665543
Q ss_pred cceeeEEEcCC---CCEEEEeeCCCcEEEEeCCCCceeee--eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCc
Q 043890 396 FDKFECCLSGD---GLRVATGSYSNLFRVFGCAPGSTEAT--TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPG 470 (509)
Q Consensus 396 ~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 470 (509)
+++|+|+ +++|++++.||.|++||+.++..... .+..
T Consensus 211 ----~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------------------- 252 (379)
T 3jrp_A 211 ----DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE---------------------------------- 252 (379)
T ss_dssp ----EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS----------------------------------
T ss_pred ----EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc----------------------------------
Confidence 8999999 89999999999999999987642210 1110
Q ss_pred ccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 471 VDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 471 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
..+...|.+++|+|++++|++++. +.+++|+
T Consensus 253 -------~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 253 -------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp -------SCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred -------ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 013467899999999999998877 7899997
No 101
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-31 Score=254.47 Aligned_cols=270 Identities=14% Similarity=0.149 Sum_probs=175.6
Q ss_pred ceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCC
Q 043890 120 INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPP 199 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (509)
+....+ ++++.+|++++.|++|++||++++......
T Consensus 92 ~~~~~~--~~~~~~las~~~d~~v~lw~~~~~~~~~~~------------------------------------------ 127 (393)
T 4gq1_A 92 GNVNSS--PVYSLFLACVCQDNTVRLIITKNETIITQH------------------------------------------ 127 (393)
T ss_dssp -----C--CEEEEEEEEEETTSCEEEEEEETTEEEEEE------------------------------------------
T ss_pred cceeec--CCCCCEEEEEeCCCcEEEEECCCCccceee------------------------------------------
Confidence 344444 667889999999999999999876532210
Q ss_pred CCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--------CCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 200 GGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--------~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+... +.+|.+.|++++|+| ++++|+++ .|++|+|||+++.....
T Consensus 128 ---------------------~~~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~----- 180 (393)
T 4gq1_A 128 ---------------------VLGG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL----- 180 (393)
T ss_dssp ---------------------EECT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-----
T ss_pred ---------------------eecc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-----
Confidence 0011 378999999999987 78999999 99999999998766543
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccc---------cCCCCccccccccccE
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQ---------EAPGSRSFFTEIIASI 341 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i 341 (509)
.+..|...+.+++|+|++.++|++++.|+.|++||+++++............ ..........+|...+
T Consensus 181 ---~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 181 ---AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp ---EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred ---eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 3456888999999999975689999999999999999876422111100000 0001112235677889
Q ss_pred EEEEEe-cCCCEEEEec-CCeEEEEECCCCCCceEEEeeccccccccccc---ccCCCccceeeEEEcC--CCCEEEEee
Q 043890 342 SDIKFA-KDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDL---YENDSIFDKFECCLSG--DGLRVATGS 414 (509)
Q Consensus 342 ~~~~~s-~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~--~~~~l~~~~ 414 (509)
.++.|+ |+++.|++++ |+.+++||+.. .+....+..+...+...... ...........+.|+| ++.++++|+
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 999987 7999999986 59999999986 45555555444332211100 0000000011344554 455777888
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCc
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTEN 494 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 494 (509)
.||.|+|||+.+++... .+..| ..+|.+++|||||+
T Consensus 337 ~Dg~V~lwd~~~~~~~~-~~~~~-------------------------------------------~~~V~svafspdG~ 372 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNS-IPIQL-------------------------------------------GMPIVDFCWHQDGS 372 (393)
T ss_dssp TTTEEEEEETTCTTCCE-EEEEC-------------------------------------------SSCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCcEEE-EecCC-------------------------------------------CCcEEEEEEcCCCC
Confidence 99999999999988776 44433 36799999999999
Q ss_pred EEEEEecCceEEEe
Q 043890 495 SIACAAANSLYMYY 508 (509)
Q Consensus 495 ~la~~~~~~i~v~~ 508 (509)
+||+++.+++.+|.
T Consensus 373 ~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 373 HLAIATEGSVLLTR 386 (393)
T ss_dssp EEEEEESSEEEEEE
T ss_pred EEEEEeCCCeEEEE
Confidence 99999999998875
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.2e-30 Score=242.08 Aligned_cols=307 Identities=11% Similarity=0.105 Sum_probs=200.4
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..|.+.|.+++|+|||++||+|+.++ ++||++...+. ... .+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------------~~~--~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------------IMS--QEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------EEE--EEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------eee--eec-----------
Confidence 45899999999999999999999775 78999876543 111 111
Q ss_pred hccceeeEEEEcCCCceE-EEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 117 EEKINKIRWCQTANGALF-LLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..+..+.+ .++++.+ ++++.|+.|++||+.+++....
T Consensus 59 -~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------------------------------------- 96 (355)
T 3vu4_A 59 -RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------------------------------------- 96 (355)
T ss_dssp -SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTEEEEE---------------------------------------
T ss_pred -CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCcEEEE---------------------------------------
Confidence 23777888 6777776 5677889999999987753321
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCC-CceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS-NQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~ 274 (509)
..+...|.+++++++. ++++.++.|++||+.+. +... .
T Consensus 97 -------------------------------~~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~--------~ 135 (355)
T 3vu4_A 97 -------------------------------IKVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRIT--------D 135 (355)
T ss_dssp -------------------------------EECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSS--------C
T ss_pred -------------------------------EECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeE--------E
Confidence 1245579999998754 55566789999999986 3321 2
Q ss_pred cCCCccceEEEEEeCCCCcEEEE--EEcCCeEEEEECCCCcccCCceeeeccccCCCC-ccccccccccEEEEEEecCCC
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDLRQSALCDSHAILFEEQEAPGS-RSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~ 351 (509)
+.. +...+++++ . ++++ |+.||.|++||++++.............. ..+ ...+.+|...|.+++|+|+|+
T Consensus 136 ~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~-~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 136 DIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA-ILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp CEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred ecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccc-cCcccEEEEccCCceEEEEECCCCC
Confidence 222 444566777 2 4444 67899999999998652100000000000 001 234567789999999999999
Q ss_pred EEEEec-CCe-EEEEECCCCCCceEEEe-e-cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 352 HILSRD-YMT-LKLWDINMDSGPVATFQ-V-HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 352 ~l~s~~-~~~-i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
+|++|+ |++ |+|||+++ ++++..+. + |...+. +++|+|++++|++++.|+.|++||+..+
T Consensus 209 ~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~---------------~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVV---------------DMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEE---------------EEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEE---------------EEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999986 598 99999997 67888887 4 665544 9999999999999999999999999865
Q ss_pred ceeee-eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceE
Q 043890 428 STEAT-TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLY 505 (509)
Q Consensus 428 ~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~ 505 (509)
..... .+..+ +.|.... ..+... ...+... ...+...++|+|+++.|++++. +.++
T Consensus 273 ~~~~~~~~~~~--------~~~~~~~-~~~~~~----------~~~~~~~---~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 273 QDNKRHALKGW--------INMKYFQ-SEWSLC----------NFKLSVD---KHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp SCCCSEETTTT--------EECCCCC-CSSCSE----------EEECCCC---TTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred CCcccccccce--------eeccccc-ccccee----------EEEeccC---CCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 32220 12111 0110000 000000 0000000 1233467999999999999887 7777
Q ss_pred EEe
Q 043890 506 MYY 508 (509)
Q Consensus 506 v~~ 508 (509)
+|.
T Consensus 331 ~~~ 333 (355)
T 3vu4_A 331 TFK 333 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 103
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=259.98 Aligned_cols=265 Identities=10% Similarity=0.055 Sum_probs=190.4
Q ss_pred eecccceEEEEECCC------CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhh
Q 043890 37 VQEVDIISAIEFDKT------GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDY 110 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~------~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 110 (509)
.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+............+ .. ....+.+|.
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--------~~----p~~~l~~h~----- 266 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC--------EK----PSLTLSLAD----- 266 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC--------CS----CSEEECCTT-----
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee--------cC----ceEEEEcCC-----
Confidence 457899999999997 5799999999999999998765310000000 00 123567777
Q ss_pred ccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 111 LKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 111 ~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..|++++| ++++ .|++|+.||+|++||++++....
T Consensus 267 -------~~v~sv~~--s~~~-~lasgs~DgtV~lWD~~~~~~~~----------------------------------- 301 (524)
T 2j04_B 267 -------SLITTFDF--LSPT-TVVCGFKNGFVAEFDLTDPEVPS----------------------------------- 301 (524)
T ss_dssp -------TCEEEEEE--SSSS-EEEEEETTSEEEEEETTBCSSCS-----------------------------------
T ss_pred -------CCEEEEEe--cCCC-eEEEEeCCCEEEEEECCCCCCce-----------------------------------
Confidence 78999999 7654 89999999999999998652100
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEE--EECCCC-CEEEEE-cCCeEEEEEccCCCceee
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWNLEISNQSFN 266 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~ 266 (509)
..+.+|...|.++ .|++++ ++|+++ .|++|++||+++.+...
T Consensus 302 ---------------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~- 347 (524)
T 2j04_B 302 ---------------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK- 347 (524)
T ss_dssp ---------------------------------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-
T ss_pred ---------------------------------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-
Confidence 0137799999999 578887 899999 99999999999765432
Q ss_pred EeeccCCccCCCc--cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 267 IVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 267 ~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
.+.+|. ..|.+++|+|++ +.|++++.|++|++||++++.. +..+. +|...|+++
T Consensus 348 -------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~----~~~l~------------gH~~~V~sv 403 (524)
T 2j04_B 348 -------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA----VHPLV------------SRETTITAI 403 (524)
T ss_dssp -------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC----CEEEE------------ECSSCEEEE
T ss_pred -------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc----ceeee------------cCCCceEEE
Confidence 223343 247899999998 8899999999999999998763 23333 355899999
Q ss_pred EEecCCCEEEEec-CCeEEEEECCCCCCceEE---------------Eeecc-cccccc----------------ccccc
Q 043890 345 KFAKDGRHILSRD-YMTLKLWDINMDSGPVAT---------------FQVHE-YLRPKL----------------CDLYE 391 (509)
Q Consensus 345 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~---------------~~~~~-~~~~~~----------------~~~~~ 391 (509)
+|+|+|++|++|+ |++|++||+.. . .+.. +.... +....+ ..+..
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~-~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNAAR-R-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBSCS-S-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred EeCCCCCeEEEEECCCEEEEEechH-h-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence 9999999999986 59999999764 1 1111 11000 000000 00110
Q ss_pred CCCccceeeEEEcCCCC---EEEEeeCCCcEEEEeCC
Q 043890 392 NDSIFDKFECCLSGDGL---RVATGSYSNLFRVFGCA 425 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~ 425 (509)
. -..|++++|+|++. .||+|+.||.|+||++.
T Consensus 482 h--~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 482 H--GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp C--CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred C--CceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 0 12356999999964 99999999999999987
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.6e-30 Score=237.39 Aligned_cols=248 Identities=19% Similarity=0.300 Sum_probs=200.6
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|...|++++|+|++++||+|+.||.|++|++.+++. ...+.+|.
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-----------------------~~~~~~h~----------- 109 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------------------LRNMTSHS----------- 109 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS-----------
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-----------------------EEEecCcc-----------
Confidence 35888999999999999999999999999999998877 67888888
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..+.++.+ ++..+++++.++.+++|+.......
T Consensus 110 -~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~------------------------------------------ 142 (318)
T 4ggc_A 110 -ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHH------------------------------------------ 142 (318)
T ss_dssp -SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCE------------------------------------------
T ss_pred -ceEEEeec----CCCEEEEEecCCceEeeecCCCcee------------------------------------------
Confidence 55666554 6679999999999999998754311
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
... +.+|...+..+.+.+++++|+++ .|+.|++||+++++..... ....
T Consensus 143 -------------------------~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~ 192 (318)
T 4ggc_A 143 -------------------------VAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTF 192 (318)
T ss_dssp -------------------------EEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEE
T ss_pred -------------------------EEE-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeee
Confidence 011 36788899999999999999999 9999999999876543221 1234
Q ss_pred CCCccceEEEEEeCCCCcEEE--EEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
..+...|.++.++|++...+. +++.++.|++||.+.... ..... +...+..+.|+|++..+
T Consensus 193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVD-------------AHSQVCSILWSPHYKEL 255 (318)
T ss_dssp CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEE-------------CSSCEEEEEEETTTTEE
T ss_pred cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc----ccccc-------------ceeeeeeeeecccccce
Confidence 567889999999998755554 556789999999988763 12221 22579999999999988
Q ss_pred EEe---cCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 354 LSR---DYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 354 ~s~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
+++ .|+.|+|||+++ .+++..+.+|...+. +++|+|++++|++|+.||+|+|||+.+..
T Consensus 256 ~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~---------------~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVL---------------SLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECTTTCCEEEEETTT-CCEEEEECCCSSCEE---------------EEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEE---------------EEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 774 259999999997 788999999987755 99999999999999999999999997643
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.5e-31 Score=249.60 Aligned_cols=255 Identities=12% Similarity=0.100 Sum_probs=190.3
Q ss_pred ecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
+|.+.|.+++|+| ++++|++++.|+.|++||+.+... ..+..|.. +
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------~~~~~~~~---------~ 162 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI------------------------QVFAKTDS---------W 162 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE------------------------EEEECCCC---------S
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce------------------------EEEeccCC---------C
Confidence 5999999999999 789999999999999999985332 33333320 1
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
...|.+++| +|++++|++++.|+.|++||+. ++..
T Consensus 163 ~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~-~~~~------------------------------------------ 197 (383)
T 3ei3_B 163 DYWYCCVDV--SVSRQMLATGDSTGRLLLLGLD-GHEI------------------------------------------ 197 (383)
T ss_dssp SCCEEEEEE--ETTTTEEEEEETTSEEEEEETT-SCEE------------------------------------------
T ss_pred CCCeEEEEE--CCCCCEEEEECCCCCEEEEECC-CCEE------------------------------------------
Confidence 167999999 8999999999999999999984 2211
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.. +.+|...|.+++|+|+++ +|+++ .|+.|++||+++.+...... .
T Consensus 198 --------------------------~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~ 245 (383)
T 3ei3_B 198 --------------------------FK-EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI-----A 245 (383)
T ss_dssp --------------------------EE-EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE-----E
T ss_pred --------------------------EE-eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE-----E
Confidence 11 367889999999999998 89998 89999999999743211110 2
Q ss_pred cCCCccceEEEEEeC-CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCC-----CccccccccccEEEEEEec
Q 043890 275 MEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPG-----SRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~ 348 (509)
...|...|.+++|+| ++ ++|++++.|+.|++||+++++. ...+..+.... .....-.....+..++|+|
T Consensus 246 ~~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 246 EMPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp EEECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred EecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc----ccccccccccccccccceEEeccCCCCceEEEecC
Confidence 235889999999999 87 9999999999999999998764 23333221100 0000001123455677778
Q ss_pred CCCEEEEe-cCCeEEEEECCCCCCceEEEeecc--cccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 349 DGRHILSR-DYMTLKLWDINMDSGPVATFQVHE--YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 349 ~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
++++ ++ .|+.|++||+.+ ++++..+..+. ..+. .++|+|++++|++++ |+.|+|||++
T Consensus 321 dg~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~~---------------~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGIIS---------------LNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCCC---------------EEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred Cccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceEE---------------EEEEecCccEEEEec-CCcEEEEecC
Confidence 7777 54 469999999997 67888887643 2222 669999999999997 9999999987
Q ss_pred C
Q 043890 426 P 426 (509)
Q Consensus 426 ~ 426 (509)
+
T Consensus 382 ~ 382 (383)
T 3ei3_B 382 D 382 (383)
T ss_dssp -
T ss_pred C
Confidence 4
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.9e-30 Score=242.36 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=199.1
Q ss_pred eeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCC
Q 043890 99 TEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNN 178 (509)
Q Consensus 99 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (509)
..+.+|. +.|++++| +|++++|++++.||.|++||+.++...
T Consensus 5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------ 46 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSN------------------------ 46 (351)
T ss_dssp CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCC------------------------
T ss_pred ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCc------------------------
Confidence 4567787 88999999 999999999999999999999865311
Q ss_pred ccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC--CCCEEEEE-cCCeEEE
Q 043890 179 VSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS--DGETFISA-DDLRINL 255 (509)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~dg~i~i 255 (509)
.++... +.+|...|.+++|+| ++++|+++ .||.|++
T Consensus 47 ----------------------------------------~~~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 47 ----------------------------------------WELSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp ----------------------------------------EEEEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ----------------------------------------ceecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 011112 367999999999999 59999999 9999999
Q ss_pred EEccCCCceeeEee-ccCCccCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc-CCCCc
Q 043890 256 WNLEISNQSFNIVD-VKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE-APGSR 331 (509)
Q Consensus 256 wd~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 331 (509)
||++++........ .....+..|...|.+++|+|+ + ++|++++.|+.|++||+++++... .+.... .....
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~ 160 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLS 160 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----cccccccccccc
Confidence 99987642100000 001245679999999999999 7 899999999999999999876432 111100 00011
Q ss_pred cccccccccEEEEEEecC---CCEEEEec-CCeEEEEECCCCCCc--eEEEeecccccccccccccCCCccceeeEEEcC
Q 043890 332 SFFTEIIASISDIKFAKD---GRHILSRD-YMTLKLWDINMDSGP--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~---~~~l~s~~-~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
.....|...+.+++|+|+ +.++++++ ++.+.+|+... ... +..+..|...+. +++|+|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~---------------~~~~~p 224 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIR---------------SISWAP 224 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEE---------------EEEECC
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCccee---------------EEEECC
Confidence 112345678999999997 88999876 47787777664 443 455666665544 999999
Q ss_pred CC----CEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEee---cCCCCCcccCCCccc
Q 043890 406 DG----LRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVR---RGSDVPGVDTNGNSF 478 (509)
Q Consensus 406 ~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 478 (509)
++ ++|++++.||.|++||+.++.... ....+.........++.......+....... .-.............
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITEKLSPL-ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEEC
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCCCcCcc-ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 98 899999999999999998765544 3333332222222222211110000000000 000000000000011
Q ss_pred ccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 479 DFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 479 ~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
.|...|++++|+|++++|++++. +.+++|+.
T Consensus 304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp TTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 35788999999999999999997 78999973
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.2e-30 Score=248.81 Aligned_cols=258 Identities=13% Similarity=0.118 Sum_probs=200.4
Q ss_pred cceecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++..... .......+.+|.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~----------------~~~~~~~~~~h~-------- 131 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP----------------LREPVITLEGHT-------- 131 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC----------------BCSCSEEEECCS--------
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc----------------cCCceEEecCCC--------
Confidence 3457999999999999 899999999999999999988743000 001146677887
Q ss_pred hhhhccceeeEEEEcCCC-ceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 114 LEIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++| +|++ ++|++++.||.|++||+.+++....
T Consensus 132 ----~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------ 169 (402)
T 2aq5_A 132 ----KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLT------------------------------------ 169 (402)
T ss_dssp ----SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEE------------------------------------
T ss_pred ----CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEE------------------------------------
Confidence 78999999 9998 6999999999999999987653221
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeee-cccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+. .+|...|.+++|+|++++|+++ .||.|++||+++++...
T Consensus 170 --------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----- 212 (402)
T 2aq5_A 170 --------------------------------LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA----- 212 (402)
T ss_dssp --------------------------------ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-----
T ss_pred --------------------------------EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee-----
Confidence 11 5688899999999999999999 99999999999866443
Q ss_pred cCCcc-CCCccc-eEEEEEeCCCCcEEEEE---EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE
Q 043890 271 KPANM-EDLTEV-ITSAEFHPTHCNMLAYS---SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 271 ~~~~~-~~~~~~-i~~l~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
.+ ..|... +.++.|+|++ ++|++| +.|+.|++||+++.+.. ...... .|...+.+++
T Consensus 213 ---~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~-----------~~~~~v~~~~ 274 (402)
T 2aq5_A 213 ---EKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LSLQEL-----------DTSSGVLLPF 274 (402)
T ss_dssp ---EEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SEEEEC-----------CCCSSCEEEE
T ss_pred ---eeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ceEEec-----------cCCCceeEEE
Confidence 23 456555 8999999998 899998 78999999999986531 112211 1235799999
Q ss_pred EecCCCEEEE-ec-CCeEEEEECCCCCCceEEEeecc--cccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEE
Q 043890 346 FAKDGRHILS-RD-YMTLKLWDINMDSGPVATFQVHE--YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 421 (509)
Q Consensus 346 ~s~~~~~l~s-~~-~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 421 (509)
|+|++++|++ ++ |+.|++||+.+....+..+..+. ..+ .+++|+|++.++++ .++.+++
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~ 337 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARF 337 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEE
Confidence 9999999875 54 69999999997433366666554 332 28999999998764 5669999
Q ss_pred EeCCCCcee
Q 043890 422 FGCAPGSTE 430 (509)
Q Consensus 422 w~~~~~~~~ 430 (509)
|++.+++..
T Consensus 338 ~~l~~~~~~ 346 (402)
T 2aq5_A 338 YKLHERKCE 346 (402)
T ss_dssp EEEETTEEE
T ss_pred EEcCCCcEE
Confidence 999887654
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.8e-30 Score=235.43 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=200.9
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT 99 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (509)
..|++.... .......|...|.+++|+|++++|++|+.||.|++|++..... .....
T Consensus 42 ~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------------------~~~~~ 98 (313)
T 3odt_A 42 RLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG--------------------EDPLY 98 (313)
T ss_dssp EEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--------------------SCC-C
T ss_pred EEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--------------------CCccc
Confidence 457664321 2233456899999999999999999999999999999986543 01145
Q ss_pred eeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 100 EFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 100 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
.+.+|. ..|.++.| ++++|++++.||.|++|| .++..
T Consensus 99 ~~~~~~------------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~------------------------- 135 (313)
T 3odt_A 99 TLIGHQ------------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLV------------------------- 135 (313)
T ss_dssp EECCCS------------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEE-------------------------
T ss_pred chhhcc------------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEE-------------------------
Confidence 667777 78999998 566999999999999999 22111
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cCCeEEEEE
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DDLRINLWN 257 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~dg~i~iwd 257 (509)
.. +..|...+.+++|.| ++++++++ .||.|++||
T Consensus 136 -------------------------------------------~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 136 -------------------------------------------YN-LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp -------------------------------------------EE-EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred -------------------------------------------Ee-cccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 11 266888899999988 89999999 999999999
Q ss_pred ccCCCceeeEeeccCCccCC-CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 258 LEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
... ... .+.. |...|.+++|+|++ . +++++.|+.|++||+++++. +..+..
T Consensus 172 ~~~--~~~--------~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~----~~~~~~------------ 223 (313)
T 3odt_A 172 NDK--VIK--------TFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV----LRTYEG------------ 223 (313)
T ss_dssp TTE--EEE--------EECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE----EEEEEC------------
T ss_pred cCc--eEE--------EEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh----hhhhhc------------
Confidence 432 221 2333 88999999999998 5 99999999999999998764 344443
Q ss_pred ccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 337 IIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
|...|.+++|+|++.+++.+.|+.|++||+++ .+++..+..|...+. +++|+|+++ +++++.|
T Consensus 224 ~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~i~---------------~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN-GSLKQVITLPAISIW---------------SVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp CSSCEEEEEECTTSCEEEEETTSEEEEECTTT-CCEEEEEECSSSCEE---------------EEEECTTSC-EEEEETT
T ss_pred CCceEEEEEEecCCCEEEEecCCEEEEEECCC-CceeEEEeccCceEE---------------EEEEccCCC-EEEEeCC
Confidence 44789999999999644444579999999997 678888887766544 899999998 5679999
Q ss_pred CcEEEEeCCCCceee
Q 043890 417 NLFRVFGCAPGSTEA 431 (509)
Q Consensus 417 g~i~iw~~~~~~~~~ 431 (509)
|.|++|++++++...
T Consensus 287 g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 287 NLVRIFSQEKSRWAS 301 (313)
T ss_dssp SCEEEEESCGGGCCC
T ss_pred CcEEEEeCCCCceee
Confidence 999999999877654
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.1e-29 Score=245.57 Aligned_cols=257 Identities=15% Similarity=0.210 Sum_probs=210.6
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-----------------------~~~~~~h~---------- 199 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-----------------------IHTLYGHT---------- 199 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS----------
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-----------------------EEEECCCC----------
Confidence 44699999999998 67999999999999999998876 67788888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.++.| + ++++++++.||.|++||+.+++....
T Consensus 200 --~~v~~~~~--~--~~~l~s~s~dg~i~~wd~~~~~~~~~--------------------------------------- 234 (445)
T 2ovr_B 200 --STVRCMHL--H--EKRVVSGSRDATLRVWDIETGQCLHV--------------------------------------- 234 (445)
T ss_dssp --SCEEEEEE--E--TTEEEEEETTSEEEEEESSSCCEEEE---------------------------------------
T ss_pred --CcEEEEEe--c--CCEEEEEeCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 78999999 3 56899999999999999987643211
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
+.+|...+.++++ ++++++++ .||.|++||+++++... .
T Consensus 235 ------------------------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~--------~ 274 (445)
T 2ovr_B 235 ------------------------------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH--------T 274 (445)
T ss_dssp ------------------------------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE--------E
T ss_pred ------------------------------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE--------E
Confidence 3678888999999 67889998 99999999999866443 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+..|...|.++.| ++ .++++++.|+.|++||+++++. +..+.. |...+.++.++ +.+++
T Consensus 275 ~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~------------~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 275 LQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTLTG------------HQSLTSGMELK--DNILV 333 (445)
T ss_dssp ECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEECC------------CCSCEEEEEEE--TTEEE
T ss_pred ecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEEcC------------CcccEEEEEEe--CCEEE
Confidence 5678999999999 55 8999999999999999998764 344443 33677777764 67888
Q ss_pred Eec-CCeEEEEECCCCCCceEEEee---cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQV---HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
+++ |+.|++||+++ .+++..+.. |...+ .+++|+ +++|++++.||.|++||+.+++.+
T Consensus 334 ~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 334 SGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp EEETTSCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEeCCCeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 876 69999999986 677777776 33332 377884 689999999999999999999988
Q ss_pred eeee-----ccCCCceeEEEEcCCCCC
Q 043890 431 ATTL-----EASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 431 ~~~~-----~~~~~~v~~~~~s~~~~~ 452 (509)
. .+ ..|.+++++++|+|++..
T Consensus 396 ~-~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 396 R-NLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp E-EEEECTTGGGTCEEEEEEECSSEEE
T ss_pred e-eeeccccCCCCceEEEEEecCCEEE
Confidence 7 66 578899999999997653
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=243.04 Aligned_cols=260 Identities=10% Similarity=0.118 Sum_probs=194.7
Q ss_pred ecccceEEEEECC-CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDK-TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~-~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
+|...|.+++|+| ++++|++++.||.|++||+.+++. ...+. +.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------~~~~~-~~----------- 141 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------------------ADVFN-FE----------- 141 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------------------EEEEE-CS-----------
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------------------ceecc-CC-----------
Confidence 4999999999999 788999999999999999988765 33333 33
Q ss_pred hccceeeEEEEcC---CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 117 EEKINKIRWCQTA---NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 117 ~~~v~~l~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..+.++.| .+ ++.++++++.|+.|++||+.+++....
T Consensus 142 -~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~------------------------------------- 181 (408)
T 4a11_B 142 -ETVYSHHM--SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI------------------------------------- 181 (408)
T ss_dssp -SCEEEEEE--CSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-------------------------------------
T ss_pred -CceeeeEe--ecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-------------------------------------
Confidence 56888998 55 555999999999999999987642211
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeec-
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDV- 270 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~- 270 (509)
+.+|...|.+++|+|+++ +|+++ .||.|++||+++.......+..
T Consensus 182 --------------------------------~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 182 --------------------------------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp --------------------------------ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred --------------------------------ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 367888999999999998 58888 8999999999876533322110
Q ss_pred -------cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 271 -------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 271 -------~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
.......|...|.+++|+|++ ++|++++.|+.|++||+++++.. ..+........ .......
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~------~~~~~~~ 298 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENT----LVNYGKVCNNS------KKGLKFT 298 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBC----CCCCCCCCCCC------SSCCCCE
T ss_pred ccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccc----eeccccccccc------cccceeE
Confidence 011235789999999999998 99999999999999999987642 11111110000 0012222
Q ss_pred EEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 344 IKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 344 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
+.....+.+++++.++.|++||+.+ .+++..+.+|...+. +++|+|++++|++++.||.|++|+
T Consensus 299 ~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~v~---------------~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTVD---------------CCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp ECCSSSSCEEEEEETTEEEEEETTT-CCEEEEECCCSSCEE---------------EEEEETTTTEEEEEETTSCEEEEE
T ss_pred EecCCCceEEEEecCCEEEEEECcC-CcceeeeccCCCeEE---------------EEEEcCCCCEEEEECCCCeEEEEe
Confidence 3334455666666789999999997 788888888877654 899999999999999999999999
Q ss_pred CCCCceee
Q 043890 424 CAPGSTEA 431 (509)
Q Consensus 424 ~~~~~~~~ 431 (509)
+.+++.+.
T Consensus 363 ~~~~~~~~ 370 (408)
T 4a11_B 363 PSLYEPVP 370 (408)
T ss_dssp ECC-----
T ss_pred CCCCCccC
Confidence 99887665
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=242.04 Aligned_cols=253 Identities=9% Similarity=0.059 Sum_probs=181.8
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
...|.+++| +|||+++|+++.|++|+ |...++.. . .+......++|+|+|
T Consensus 15 ~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~---------------gh~~~v~~V~FsPdg-------- 64 (588)
T 2j04_A 15 EDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---N---------------CNSKNLFHVKEFPLE-------- 64 (588)
T ss_dssp SSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---S---------------SBGGGTEEEEEECCC--------
T ss_pred hccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---c---------------CCCccEEEEEECCCC--------
Confidence 378999999 99999999999999999 64433211 1 133344456677776
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
.++.|+++..+.... +...|...|.+++|+|+|..||++ .||.|++||.+. ... .+
T Consensus 65 -------~~~~~~~~~~~~~~~------~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~-------~l 121 (588)
T 2j04_A 65 -------FENKLDFELAQQNGL------LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT-------NL 121 (588)
T ss_dssp -------CCCTTTTSCCCSSCS------STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE-------EC
T ss_pred -------CcceEEEEeCCCceE------eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee-------ec
Confidence 245555554332221 112567889999999999999999 999999999543 222 23
Q ss_pred CCCcc-----ceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCC---ceeeeccccCCCCccccccccccEEEEEEe
Q 043890 276 EDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDS---HAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 276 ~~~~~-----~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
. |.. .+.+++|+|+| ++|++|+.||+|++||+.++.+... .+.++..+ ..+|...|.+++|+
T Consensus 122 ~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~~V~sVawS 191 (588)
T 2j04_A 122 D-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKDWVTHIVWY 191 (588)
T ss_dssp C-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCCCEEEEEEE
T ss_pred c-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccccccEEEEEEc
Confidence 3 443 59999999998 9999999999999999998752110 12333322 23466899999999
Q ss_pred cCCCEEEEecCCeEEEEECCCCCC--ceEEEe-ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 348 KDGRHILSRDYMTLKLWDINMDSG--PVATFQ-VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 348 ~~~~~l~s~~~~~i~iwd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
||| +++++.|+.|++||+..... ...++. +|...+. +++|+ ++.||+++ ++.|++||+
T Consensus 192 Pdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~---------------svaFs--g~~LASa~-~~tIkLWd~ 252 (588)
T 2j04_A 192 EDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT---------------DLKIV--DYKVVLTC-PGYVHKIDL 252 (588)
T ss_dssp TTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC---------------CEEEE--TTEEEEEC-SSEEEEEET
T ss_pred CCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEE---------------EEEEE--CCEEEEEe-CCeEEEEEC
Confidence 999 55556789999999986321 234553 5554443 89999 68999887 699999999
Q ss_pred CCCceeeeeeccCCCceeEEEE--cCCCCC
Q 043890 425 APGSTEATTLEASKNPMRRQVQ--TPSRPS 452 (509)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~--s~~~~~ 452 (509)
.+++... ...+|...+..+++ +|++..
T Consensus 253 ~~~~~~~-~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 253 KNYSISS-LKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp TTTEEEE-EECSCCSCCCEEEETTCSSCEE
T ss_pred CCCeEEE-EEcCCCceEEEEEeeeCCCCCE
Confidence 9877744 33378888888888 776643
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.9e-30 Score=246.27 Aligned_cols=291 Identities=14% Similarity=0.161 Sum_probs=195.9
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
.+.+.|++++| +|++++|++|+.||.|+|||+.+++.......
T Consensus 26 ~~~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~----------------------------------- 68 (447)
T 3dw8_B 26 AEADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSR----------------------------------- 68 (447)
T ss_dssp CGGGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCC-----------------------------------
T ss_pred cccCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-----------------------------------
Confidence 33488999999 99999999999999999999987652111000
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccc------------cCeEEEEECCCC--CEEEEE-cCCeEEEEEcc
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHD------------YHINSISNNSDG--ETFISA-DDLRINLWNLE 259 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~i~~~~~~--~~l~~~-~dg~i~iwd~~ 259 (509)
. ...+... +.+|. ..|.+++|+|++ ..|+++ .|+.|++||+.
T Consensus 69 ------------------~----~~~~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~ 125 (447)
T 3dw8_B 69 ------------------G----EYNVYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKIS 125 (447)
T ss_dssp ------------------C----CEEEEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEE
T ss_pred ------------------c----ceeEecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecc
Confidence 0 0111122 25676 789999999998 789988 99999999998
Q ss_pred CCCceeeEeecc--------------------------------CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 260 ISNQSFNIVDVK--------------------------------PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 260 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
+.........+. .....+|...|.+++|+|++ ++|+++ .|+.|++|
T Consensus 126 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iw 203 (447)
T 3dw8_B 126 ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLW 203 (447)
T ss_dssp EEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEE
T ss_pred cccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEE
Confidence 643211000000 00136799999999999998 899998 89999999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC-CEEEEec-CCeEEEEECCCCCCc----eEEEeeccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG-RHILSRD-YMTLKLWDINMDSGP----VATFQVHEY 381 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~-~~~i~iwd~~~~~~~----~~~~~~~~~ 381 (509)
|++..... ...+... ...+.+|...|.+++|+|++ .+|++++ |+.|++||+++ ... ...+..|..
T Consensus 204 d~~~~~~~---~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 204 HLEITDRS---FNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPED 274 (447)
T ss_dssp ETTEEEEE---EEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC--
T ss_pred ECCCCCce---eeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCC
Confidence 99954321 2222111 12355677899999999998 8999986 59999999997 444 577776654
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC-CceeeeeeccCCCceeEEEEcCCCCCCcccceee
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP-GSTEATTLEASKNPMRRQVQTPSRPSRSLSSITR 460 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 460 (509)
........ .....|.+++|+|++++|++++. +.|++||+.+ ++++. .+.+|......+..
T Consensus 275 ~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~-~~~~~~~~~~~l~~-------------- 335 (447)
T 3dw8_B 275 PSNRSFFS---EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE-TYQVHEYLRSKLCS-------------- 335 (447)
T ss_dssp ---CCHHH---HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC-CEESCGGGTTTHHH--------------
T ss_pred cccccccc---ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc-eeeccccccccccc--------------
Confidence 10000000 00002349999999999999999 9999999997 77776 77776522110000
Q ss_pred EeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 461 VVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
+... .....+..++|+|++++|++++. +.+++|+.
T Consensus 336 ------------~~~~--~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 336 ------------LYEN--DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp ------------HHHT--SGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ------------cccc--cccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 0000 00112456999999999999987 88999974
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=237.64 Aligned_cols=275 Identities=8% Similarity=0.037 Sum_probs=212.0
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe-----eeccCCcchhhccc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT-----EFQSHEPEFDYLKS 113 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~~~~~~~ 113 (509)
....+.+++|+|++.++++++.++.|++||+.+++. .. .+.+|.
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----------------------~~~~~~~~~~~~~-------- 169 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----------------------VRLSPPEKYKKKL-------- 169 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE-----------------------EEECCCHHHHTTC--------
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----------------------eeecCcccccccC--------
Confidence 345567999999888899999999999999988765 22 344565
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
..|.+++| +++++++++++.|+.|++||+.+++....
T Consensus 170 ----~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~------------------------------------- 206 (433)
T 3bws_A 170 ----GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKAT------------------------------------- 206 (433)
T ss_dssp ----CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEE-------------------------------------
T ss_pred ----CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEE-------------------------------------
Confidence 77999999 99999999999999999999986543211
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeEeecc
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+..|...+.+++|+|+++.++ ++ .++.|++||+++++...
T Consensus 207 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~------ 248 (433)
T 3bws_A 207 --------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR------ 248 (433)
T ss_dssp --------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE------
T ss_pred --------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE------
Confidence 245677899999999999875 55 79999999998765432
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEE--------cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
.+. +...+.+++|+|++ +++++++ .|+.|++||+++++. ...+. |...+.+
T Consensus 249 --~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~-------------~~~~~~~ 307 (433)
T 3bws_A 249 --KTD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKL----IDTIG-------------PPGNKRH 307 (433)
T ss_dssp --ECC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEE----EEEEE-------------EEECEEE
T ss_pred --Eec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcE----Eeecc-------------CCCCcce
Confidence 222 23458999999998 7888877 488999999998764 22221 2247889
Q ss_pred EEEecCCCEEEE-ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC------
Q 043890 344 IKFAKDGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY------ 415 (509)
Q Consensus 344 ~~~s~~~~~l~s-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------ 415 (509)
++|+|+++.++. ++ ++.|++||+.+ .+.+..+. +...+ .+++|+|++++|++++.
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-VFDKP---------------NTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSE---------------EEEEECTTSSEEEEEECCCCCTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-CCCCC---------------CeEEEcCCCCEEEEEecCCCccc
Confidence 999999986654 44 59999999996 55555554 22222 28999999999988876
Q ss_pred ---------CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEE
Q 043890 416 ---------SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLH 486 (509)
Q Consensus 416 ---------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 486 (509)
||.|++||+.+++.+. .+.. ...+.+
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~-~~~~--------------------------------------------~~~~~~ 405 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKE-FWEA--------------------------------------------GNQPTG 405 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEE-EEEC--------------------------------------------SSSEEE
T ss_pred cccccccccceEEEEEECCCCcEEE-EecC--------------------------------------------CCCCce
Confidence 5799999999888776 4332 134789
Q ss_pred EEEcCCCcEEEEEe--cCceEEEe
Q 043890 487 LAWHPTENSIACAA--ANSLYMYY 508 (509)
Q Consensus 487 ~~~~p~~~~la~~~--~~~i~v~~ 508 (509)
++|+|++++|++++ ++.+++|+
T Consensus 406 ~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 406 LDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEE
Confidence 99999999998776 48999997
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=258.38 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=193.9
Q ss_pred eeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCC
Q 043890 99 TEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNN 178 (509)
Q Consensus 99 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (509)
..+.+|. +.|++++| +|++++|++|+.||.|++||+.++..
T Consensus 3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~------------------------- 43 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETH------------------------- 43 (753)
T ss_dssp -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEE-------------------------
T ss_pred eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCC-------------------------
Confidence 4567887 88999999 99999999999999999999874321
Q ss_pred ccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC--CCEEEEE-cCCeEEE
Q 043890 179 VSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD--GETFISA-DDLRINL 255 (509)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~dg~i~i 255 (509)
.+... +.+|...|++++|+++ +++|+++ .||.|++
T Consensus 44 -----------------------------------------~~~~~-l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 44 -----------------------------------------KLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----------------------------------------EEEEE-ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred -----------------------------------------cccee-ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 11112 3789999999999988 9999999 9999999
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCC--CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSF 333 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (509)
||+++++.... ..+..|...|.+++|+|+ + +++++++.||.|++||++.+.... ...
T Consensus 82 wd~~~~~~~~~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~------------ 140 (753)
T 3jro_A 82 WKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PII------------ 140 (753)
T ss_dssp EEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEE------------
T ss_pred EECCCCccccc------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeE------------
Confidence 99997652111 255779999999999999 7 899999999999999999874311 112
Q ss_pred cccccccEEEEEEec-------------CCCEEEEec-CCeEEEEECCCCC---CceEEEeecccccccccccccCCCcc
Q 043890 334 FTEIIASISDIKFAK-------------DGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEYLRPKLCDLYENDSIF 396 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~-------------~~~~l~s~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
+.+|...|.+++|+| ++.++++|+ ||.|++||+++.. .+...+..|...+.
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~------------ 208 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR------------ 208 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE------------
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE------------
Confidence 234557899999999 588888876 6999999998633 23345566665544
Q ss_pred ceeeEEEcCC---CCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccC
Q 043890 397 DKFECCLSGD---GLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDT 473 (509)
Q Consensus 397 ~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (509)
+++|+|+ +++|++++.||.|++||+.+++... ..... .
T Consensus 209 ---~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~----------------------------------~- 249 (753)
T 3jro_A 209 ---DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLL----------------------------------K- 249 (753)
T ss_dssp ---EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-BCCBS----------------------------------S-
T ss_pred ---EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-eeEEe----------------------------------c-
Confidence 9999999 9999999999999999998764221 00000 0
Q ss_pred CCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 474 NGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 474 ~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
...+...|.+++|+|++++|++++. +.+++|+.
T Consensus 250 ---~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 250 ---EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp ---SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred ---cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 0113567889999999999998877 78998873
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6.2e-29 Score=231.63 Aligned_cols=275 Identities=12% Similarity=0.107 Sum_probs=202.0
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCC-eEEeecCCCeEEEEEc-cCCCCCCCccccccccccccccCCcceE
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGD-HLATGDRGGRVVLFER-TDTKDHGGSRRDLERMDYSTSRHPEFRY 97 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (509)
..|.+.............+|...|.+++|+|+++ +|++|+.||.|++||+ .+.+.
T Consensus 36 ~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------------- 92 (342)
T 1yfq_A 36 TVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------------- 92 (342)
T ss_dssp EEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----------------------
T ss_pred EEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----------------------
Confidence 4566654321111233457999999999999999 9999999999999999 76653
Q ss_pred Eeeecc--CCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccC
Q 043890 98 KTEFQS--HEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASS 175 (509)
Q Consensus 98 ~~~~~~--h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (509)
..+.+ |. ..|.+++| ++ +++|++++.|+.|++||+.+........
T Consensus 93 -~~~~~~~~~------------~~v~~l~~--~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------- 139 (342)
T 1yfq_A 93 -QALTNNEAN------------LGICRICK--YG-DDKLIAASWDGLIEVIDPRNYGDGVIAV----------------- 139 (342)
T ss_dssp -EECBSCCCC------------SCEEEEEE--ET-TTEEEEEETTSEEEEECHHHHTTBCEEE-----------------
T ss_pred -EeccccCCC------------CceEEEEe--CC-CCEEEEEcCCCeEEEEcccccccccccc-----------------
Confidence 56666 77 78999999 77 8899999999999999987521000000
Q ss_pred CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEE
Q 043890 176 SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRIN 254 (509)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~ 254 (509)
..++... ..|...+.+++|++++ ++++ .|+.|+
T Consensus 140 ------------------------------------------~~~~~~~--~~~~~~v~~~~~~~~~--l~~~~~d~~i~ 173 (342)
T 1yfq_A 140 ------------------------------------------KNLNSNN--TKVKNKIFTMDTNSSR--LIVGMNNSQVQ 173 (342)
T ss_dssp ------------------------------------------EESCSSS--SSSCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred ------------------------------------------cCCeeeE--EeeCCceEEEEecCCc--EEEEeCCCeEE
Confidence 0000000 2267789999999987 7777 999999
Q ss_pred EEEccC-CCceeeEeeccCCccCCCccceEEEEEeC-CCCcEEEEEEcCCeEEEEECCCC--cccCCceeeeccccCCCC
Q 043890 255 LWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDLRQS--ALCDSHAILFEEQEAPGS 330 (509)
Q Consensus 255 iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~ 330 (509)
+||+++ ....... ....|...|.+++|+| ++ +++++++.||.|++||++.. .........+..+....
T Consensus 174 i~d~~~~~~~~~~~------~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~- 245 (342)
T 1yfq_A 174 WFRLPLCEDDNGTI------EESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL- 245 (342)
T ss_dssp EEESSCCTTCCCEE------EECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT-
T ss_pred EEECCcccccccee------eecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc-
Confidence 999997 5432221 2345788999999999 98 99999999999999999876 11112245555443211
Q ss_pred ccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeec-ccccccccccccCCCccceeeEEEcCCCC
Q 043890 331 RSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 331 ~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
.-.+|...|.+++|+|++++|++++ ++.|++||+.+ .+.+..+..| ...+. +++ |+++
T Consensus 246 --~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~---------------~~~--~~~~ 305 (342)
T 1yfq_A 246 --KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSVV---------------KIA--CSDN 305 (342)
T ss_dssp --TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSEEE---------------EEE--ECSS
T ss_pred --cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCCce---------------Eec--CCCC
Confidence 0123446899999999999999986 59999999996 6777888777 66543 677 9999
Q ss_pred EEEEeeCCCc-EEEEeC
Q 043890 409 RVATGSYSNL-FRVFGC 424 (509)
Q Consensus 409 ~l~~~~~dg~-i~iw~~ 424 (509)
+|++++.||. .+.|..
T Consensus 306 ~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEEEECTHHHHCSSS
T ss_pred eEEEEecCCcccccccc
Confidence 9999999998 655553
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.3e-29 Score=239.93 Aligned_cols=241 Identities=17% Similarity=0.281 Sum_probs=191.4
Q ss_pred ceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 36 EVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
+.+|.+.|.+++| ++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~~~h~---------- 213 (435)
T 1p22_A 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-----------------------LNTLIHHC---------- 213 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-----------------------EEEECCCC----------
T ss_pred EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE-----------------------EEEEcCCC----------
Confidence 4469999999999 788999999999999999998876 67788888
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..|.++.| + +.++++++.||.|++||+.++.....
T Consensus 214 --~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~--------------------------------------- 248 (435)
T 1p22_A 214 --EAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITL--------------------------------------- 248 (435)
T ss_dssp --SCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEE---------------------------------------
T ss_pred --CcEEEEEE--c--CCEEEEeeCCCcEEEEeCCCCCCcee---------------------------------------
Confidence 78999999 5 45999999999999999987542210
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
. ..+.+|...|.+++| ++++++++ .||.|++||+++++... .
T Consensus 249 --------------------------~-~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~--------~ 291 (435)
T 1p22_A 249 --------------------------R-RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR--------T 291 (435)
T ss_dssp --------------------------E-EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE--------E
T ss_pred --------------------------e-eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE--------E
Confidence 0 113778899999999 78899999 99999999999876543 4
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
+..|...|.++.++ + +++++|+.||.|++||+++++. +..+.. |...|.+++| ++.+|+
T Consensus 292 ~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~----~~~~~~------------h~~~v~~~~~--~~~~l~ 350 (435)
T 1p22_A 292 LNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEG------------HEELVRCIRF--DNKRIV 350 (435)
T ss_dssp EECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECC------------CSSCEEEEEC--CSSEEE
T ss_pred EcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCE----EEEEeC------------CcCcEEEEEe--cCCEEE
Confidence 56788999999995 4 7899999999999999998764 344443 4478999998 788999
Q ss_pred Eec-CCeEEEEECCCCCC--------ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 355 SRD-YMTLKLWDINMDSG--------PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
+|+ ||.|++||+.+... ++..+..|...+. +++| ++++|++++.||.|++||+.
T Consensus 351 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~---------------~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF---------------RLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC---------------CEEE--CSSCEEECCSSSEEEEEC--
T ss_pred EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE---------------EEEe--CCCEEEEEeCCCEEEEEECC
Confidence 986 59999999975221 5677777776654 7888 78899999999999999998
Q ss_pred CCceee
Q 043890 426 PGSTEA 431 (509)
Q Consensus 426 ~~~~~~ 431 (509)
+.....
T Consensus 414 ~~~~~~ 419 (435)
T 1p22_A 414 NDPAAQ 419 (435)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 765543
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.5e-29 Score=239.82 Aligned_cols=262 Identities=8% Similarity=-0.020 Sum_probs=168.9
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
..+....+++++.+||+|+.|++|+|||..+++. ........+.+|. +.|
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~------------------~~~~~~~~~~gH~------------~~v 139 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI------------------ITQHVLGGKSGHH------------NFV 139 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEE------------------EEEEEECTTTSCS------------SCE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc------------------ceeeeecccCCCC------------Cce
Confidence 3334444455677899999999999999987754 0111245678888 889
Q ss_pred eeeEEEEc------CCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 121 NKIRWCQT------ANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 121 ~~l~~~~~------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
++++|+|. .|+++|++++.|++|+|||+.++.....
T Consensus 140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-------------------------------------- 181 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-------------------------------------- 181 (393)
T ss_dssp EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------------------------------------
T ss_pred EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------------------------------------
Confidence 99999431 2789999999999999999976542111
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEeec--
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDV-- 270 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~~~-- 270 (509)
+.+|...+.+++|+|++. +|+++ .|+.|++||+++++........
T Consensus 182 -------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 182 -------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp -------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred -------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 256778899999999874 78888 9999999999976543221100
Q ss_pred ---------------cCCccCCCccceEEEEEe-CCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCC----
Q 043890 271 ---------------KPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGS---- 330 (509)
Q Consensus 271 ---------------~~~~~~~~~~~i~~l~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---- 330 (509)
......+|...+.++.|. |++ +.+++++.|+.+++||+..++.. ..+..+.....
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNL 305 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CC
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEE
Confidence 001234677889999997 677 99999999999999999877532 22221110000
Q ss_pred ---ccccccccccEEEEEEec--CCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEc
Q 043890 331 ---RSFFTEIIASISDIKFAK--DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS 404 (509)
Q Consensus 331 ---~~~~~~~~~~i~~~~~s~--~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 404 (509)
......+. ......|+| ++.++++|+ |+.|+|||+.+ +.....+..|...+. +++|+
T Consensus 306 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~---------------svafs 368 (393)
T 4gq1_A 306 LPNVQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIV---------------DFCWH 368 (393)
T ss_dssp SCSEEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEE---------------EEEEC
T ss_pred ccccccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEE---------------EEEEc
Confidence 00011111 222334444 344566676 59999999997 566666667766544 99999
Q ss_pred CCCCEEEEeeCCCcEEEEeC
Q 043890 405 GDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 405 ~~~~~l~~~~~dg~i~iw~~ 424 (509)
|||++||+++++| +.+|.+
T Consensus 369 pdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 369 QDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEeCCC-eEEEEE
Confidence 9999999998776 555554
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.8e-27 Score=226.12 Aligned_cols=232 Identities=10% Similarity=0.127 Sum_probs=176.7
Q ss_pred CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCc
Q 043890 53 DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGA 132 (509)
Q Consensus 53 ~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 132 (509)
.++++++.|+.|++||+.+++. ...+..|. .+.+++| +|+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~~-------------~~~~~~~--s~dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVGS-------------NPMGAVI--SPDGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECSS-------------SEEEEEE--CTTSS
T ss_pred EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecCC-------------CcceEEE--CCCCC
Confidence 4788899999999999988776 55666664 4899999 99999
Q ss_pred eE-EEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccccc
Q 043890 133 LF-LLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVT 211 (509)
Q Consensus 133 ~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 211 (509)
++ ++++.|+.|++||+.+++....
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~------------------------------------------------------- 69 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIAT------------------------------------------------------- 69 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEE-------------------------------------------------------
T ss_pred EEEEECCCCCeEEEEECCCCeEEEE-------------------------------------------------------
Confidence 77 5667899999999987753321
Q ss_pred ccccceeeeeeeeeecccccCeEEEEECCCCCEEEE-E-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC
Q 043890 212 SNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 289 (509)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 289 (509)
+.. ...+.+++|+|++++|++ + .++.|++||+.+++.... +. +...+.+++|+|
T Consensus 70 --------------~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~--------~~-~~~~~~~~~~s~ 125 (391)
T 1l0q_A 70 --------------VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT--------VK-TGKSPLGLALSP 125 (391)
T ss_dssp --------------EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------EE-CSSSEEEEEECT
T ss_pred --------------EEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE--------Ee-CCCCcceEEECC
Confidence 122 227899999999998765 4 679999999998664332 12 345689999999
Q ss_pred CCCcEE-EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE-Eec-CCeEEEEEC
Q 043890 290 THCNML-AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL-SRD-YMTLKLWDI 366 (509)
Q Consensus 290 ~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~-~~~i~iwd~ 366 (509)
++ +.+ ++++.++.|++||+++++. ...+..+ ..+.+++|+|++++|+ ++. ++.|++||+
T Consensus 126 dg-~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 126 DG-KKLYVTNNGDKTVSVINTVTKAV----INTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp TS-SEEEEEETTTTEEEEEETTTTEE----EEEEECC-------------SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CC-CEEEEEeCCCCEEEEEECCCCcE----EEEEecC-------------CCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 98 655 7888899999999998764 3444332 3578999999999884 554 499999999
Q ss_pred CCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee---CCCcEEEEeCCCCceeeeeeccC
Q 043890 367 NMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS---YSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
++ .+....+..+. .+ ..++|+|++++|++++ .++.|++||+.+++.+. .+..|
T Consensus 188 ~~-~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~ 243 (391)
T 1l0q_A 188 VT-NSVIDTVKVEA-AP---------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPVG 243 (391)
T ss_dssp TT-TEEEEEEECSS-EE---------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EEECC
T ss_pred CC-CeEEEEEecCC-Cc---------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE-EEecC
Confidence 86 55555554322 22 2899999999999888 68999999999888776 55443
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.9e-28 Score=233.17 Aligned_cols=256 Identities=10% Similarity=0.060 Sum_probs=190.7
Q ss_pred ecccceEEEEECCCCCeE-EeecCCCeEEEEEcc--CCCCCCCccccccccccccccCCcceEEeeec--cCCcchhhcc
Q 043890 38 QEVDIISAIEFDKTGDHL-ATGDRGGRVVLFERT--DTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ--SHEPEFDYLK 112 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~l-a~g~~dg~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~ 112 (509)
+|.+.|.+++|+|++++| |+|+.||.|+|||+. +++. ...+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------------------~~~~~~~~~~------- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----------------------LKLRKRFCFS------- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------------------EEEEEEEECS-------
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----------------------eeeeecccCC-------
Confidence 577899999999999996 899999999999998 6655 44444 344
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|++++| +|++++|++++.||.|++|++.++.....
T Consensus 150 -----~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------------------ 186 (450)
T 2vdu_B 150 -----KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF------------------------------------ 186 (450)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC------------------------------------
T ss_pred -----CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc------------------------------------
Confidence 67999999 99999999999999999999986642210
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC---CCEEEEE-cCCeEEEEEccCCCceeeEe
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~dg~i~iwd~~~~~~~~~~~ 268 (509)
+... +.+|...|.+++|+|+ +++|+++ .|+.|++||+++++....
T Consensus 187 ----------------------------~~~~-~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-- 235 (450)
T 2vdu_B 187 ----------------------------TQEP-ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-- 235 (450)
T ss_dssp ----------------------------CCCC-SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--
T ss_pred ----------------------------ccee-eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--
Confidence 0000 2678889999999999 9999999 899999999998765432
Q ss_pred eccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCC-------------ccccc
Q 043890 269 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGS-------------RSFFT 335 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 335 (509)
.+.+|...|.+++|+ ++ ++|++++.|+.|++||+++++. +..+..+..... .....
T Consensus 236 -----~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 236 -----WLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp -----ECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC----------
T ss_pred -----eecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccccc
Confidence 245799999999999 87 9999999999999999998874 333332110000 00000
Q ss_pred cccccEEEEEEecCCCEEEEec--CCeEEEEEC--CCCC---CceEEEeecccccccccccccCCCccceeeEEEcCCCC
Q 043890 336 EIIASISDIKFAKDGRHILSRD--YMTLKLWDI--NMDS---GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
.....|.+++|+|++++|+++. ++.|+|||+ .. . ..+..+..+ ..+ .+++|+|++.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~ 367 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEF 367 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcE
Confidence 2235799999999999999875 599999999 43 3 344455555 322 3899999654
Q ss_pred EEEEeeC------CCcEEEEeCC
Q 043890 409 RVATGSY------SNLFRVFGCA 425 (509)
Q Consensus 409 ~l~~~~~------dg~i~iw~~~ 425 (509)
++++++. +..|.+|.++
T Consensus 368 ~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 368 QVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEecccCCCCCCcceEEEEEE
Confidence 4444443 4568888765
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=228.07 Aligned_cols=274 Identities=13% Similarity=0.206 Sum_probs=198.5
Q ss_pred eeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe
Q 043890 20 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT 99 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (509)
..|++... +......+.+|.+.|.+++|+|++++|++|+.||.|++||+.+.+. .
T Consensus 67 ~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------------------------~ 121 (368)
T 3mmy_A 67 RCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA------------------------I 121 (368)
T ss_dssp EEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------------------E
T ss_pred EEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc------------------------e
Confidence 45776531 1111234567999999999999999999999999999999987765 3
Q ss_pred eeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 100 EFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 100 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
.+.+|. ..|++++|.+++++++|++++.||.|++||+.+++.....
T Consensus 122 ~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------------------- 167 (368)
T 3mmy_A 122 QIAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL---------------------- 167 (368)
T ss_dssp EEEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE----------------------
T ss_pred eecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE----------------------
Confidence 355676 7899999988899999999999999999999876533221
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEc
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 258 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~ 258 (509)
..+ ..+.++.+.+ ..++++ .++.+++|++
T Consensus 168 -----------------------------------------------~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 168 -----------------------------------------------QLP-ERCYCADVIY--PMAVVATAERGLIVYQL 197 (368)
T ss_dssp -----------------------------------------------ECS-SCEEEEEEET--TEEEEEEGGGCEEEEEC
T ss_pred -----------------------------------------------ecC-CCceEEEecC--CeeEEEeCCCcEEEEEe
Confidence 222 2355555543 467777 8999999999
Q ss_pred cCCCceeeEeeccCCccCCCccceEEEEEeCCC---CcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccc
Q 043890 259 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---CNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFT 335 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
+........ ....+...+.++.+.++. +..+++++.|+.|++||++.... ......+..+..........
T Consensus 198 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 198 ENQPSEFRR------IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp SSSCEEEEE------CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC----CCC
T ss_pred ccccchhhh------ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeeccccccccc
Confidence 976544332 122234455566666554 12399999999999999998742 01234455444332233344
Q ss_pred cccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 336 EIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 336 ~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
.|...|.+++|+|++++|++++ |+.|++||+.+ .+++..+..|...+. +++|+|++++|++++
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~---------------~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPIS---------------ACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCEE---------------EEEECTTSSCEEEEE
T ss_pred ccccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCce---------------EEEECCCCCeEEEEe
Confidence 4555899999999999999986 69999999996 678888887776654 999999999999999
Q ss_pred CCCcEEEEeCC
Q 043890 415 YSNLFRVFGCA 425 (509)
Q Consensus 415 ~dg~i~iw~~~ 425 (509)
.|+..+.|++.
T Consensus 335 ~d~~~~~~~~~ 345 (368)
T 3mmy_A 335 SYDWSKGHEFY 345 (368)
T ss_dssp CCCSTTCGGGC
T ss_pred ccccccccccc
Confidence 98866655544
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.1e-26 Score=217.57 Aligned_cols=259 Identities=14% Similarity=0.140 Sum_probs=195.9
Q ss_pred cccceEEEEECCCCCeE-EeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGDHL-ATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~l-a~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+...+.+++|+|++++| ++++.|+.|++||+.+++. ...+..+
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~------------- 73 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG------------- 73 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS-------------
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC-------------
Confidence 44568999999999876 6777899999999988766 4444443
Q ss_pred ccceeeEEEEcCCCceEEEee-CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 118 EKINKIRWCQTANGALFLLST-NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..+.+++| +|++++|+.++ .|+.|++||+.+++....
T Consensus 74 ~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~---------------------------------------- 111 (391)
T 1l0q_A 74 SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT---------------------------------------- 111 (391)
T ss_dssp SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE----------------------------------------
T ss_pred CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEE----------------------------------------
Confidence 35899999 99999886554 679999999987653221
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEE-EEE-cCCeEEEEEccCCCceeeEeeccCCc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
..+...+.+++|+|+++.+ +++ .++.|++||+++++....
T Consensus 112 ------------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-------- 153 (391)
T 1l0q_A 112 ------------------------------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-------- 153 (391)
T ss_dssp ------------------------------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------
T ss_pred ------------------------------EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--------
Confidence 1123457899999999987 566 799999999987654332
Q ss_pred cCCCccceEEEEEeCCCCcEE-EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 275 MEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
+.. ...+.+++|+|++ +.+ ++++.++.|++||+++++. ...+.. ...+.+++|+|++++|
T Consensus 154 ~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~-------------~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 154 VSV-GRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSV----IDTVKV-------------EAAPSGIAVNPEGTKA 214 (391)
T ss_dssp EEC-CSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE----EEEEEC-------------SSEEEEEEECTTSSEE
T ss_pred Eec-CCCcceEEECCCC-CEEEEEeCCCCEEEEEECCCCeE----EEEEec-------------CCCccceEECCCCCEE
Confidence 222 3456899999998 555 6778899999999998763 233322 2478999999999988
Q ss_pred EEec----CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEE-EEeeCCCcEEEEeCCCCc
Q 043890 354 LSRD----YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV-ATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 354 ~s~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~ 428 (509)
++++ ++.|++||+.+ .+.+..+..+... .+++|+|++++| ++++.|+.|++||+.+++
T Consensus 215 ~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEecCcCCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 8864 59999999996 5666666655432 279999999987 566889999999999999
Q ss_pred eeeeeeccCCCcee---EEEEcCCC
Q 043890 429 TEATTLEASKNPMR---RQVQTPSR 450 (509)
Q Consensus 429 ~~~~~~~~~~~~v~---~~~~s~~~ 450 (509)
.+. .+..|..+.. .+.+.|++
T Consensus 278 ~~~-~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 278 ITA-TMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp EEE-EEECSSSEECCSSCEEECSSC
T ss_pred EEE-EEECCcCCCccceeeeccccc
Confidence 887 8888876643 24444443
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.2e-26 Score=206.37 Aligned_cols=188 Identities=12% Similarity=0.104 Sum_probs=136.1
Q ss_pred CCCCEEEEE---cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC---CCCcEEEEEEcCCeEEEEECCCCc
Q 043890 240 SDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDLRQSA 313 (509)
Q Consensus 240 ~~~~~l~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~~l~~~~~dg~i~vwd~~~~~ 313 (509)
++++++.++ .|+.|++|++........ .+..|...++.++|++ ++ .+|++++.|++|+|||+++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc
Confidence 566666664 388999999854332221 3456788888888888 65 899999999999999999997
Q ss_pred ccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE------------Eec-CCeEEEEECCCCCCceEEEe---
Q 043890 314 LCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL------------SRD-YMTLKLWDINMDSGPVATFQ--- 377 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~------------s~~-~~~i~iwd~~~~~~~~~~~~--- 377 (509)
. ++++..+.. +...+.+++|+|+|++++ +|+ |++|++||..+ ++.+..+.
T Consensus 215 ~----l~tL~g~~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~ 280 (356)
T 2w18_A 215 L----LKKMHIDDS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCL 280 (356)
T ss_dssp E----EEEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEECC
T ss_pred E----EEEEcCCCc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeec
Confidence 5 566654321 124678889999999874 454 48999999986 55555442
Q ss_pred --ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcc
Q 043890 378 --VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSL 455 (509)
Q Consensus 378 --~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 455 (509)
+|... .+..+.++.++|+++.|++|+|||+.+++++. ++.+|.
T Consensus 281 p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~-tL~gH~----------------- 325 (356)
T 2w18_A 281 PPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTA-LLPPVS----------------- 325 (356)
T ss_dssp CTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTCSEEE-EECCC------------------
T ss_pred cCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCCcEEE-EecCCC-----------------
Confidence 22211 12223347899999999999999999999998 888775
Q ss_pred cceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEeC
Q 043890 456 SSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYYA 509 (509)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~~ 509 (509)
...+..++||||+++||+|+. ++|+||+.
T Consensus 326 -------------------------~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 -------------------------DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -------------------------CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 122446899999999999998 89999973
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.2e-25 Score=220.60 Aligned_cols=324 Identities=10% Similarity=0.078 Sum_probs=228.2
Q ss_pred EECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEE
Q 043890 47 EFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 126 (509)
Q Consensus 47 ~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 126 (509)
+|+|++.++++++.|+.|.+||..+++. ...+..+. . +..++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~- 186 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRM- 186 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEE-
Confidence 4889999999999999999999998876 55555332 2 788999
Q ss_pred EcCCCceEEEeeCCCeEEEEec--cchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCc
Q 043890 127 QTANGALFLLSTNDKTIKFWKV--QEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPS 204 (509)
Q Consensus 127 ~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 204 (509)
+|||++|++++.|+.|.+||+ .+++....
T Consensus 187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~------------------------------------------------ 217 (543)
T 1nir_A 187 -SASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------------------------------------------ 217 (543)
T ss_dssp -CTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------------------------------------------
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCCCcEEEE------------------------------------------------
Confidence 999999999999999999999 55432111
Q ss_pred cccccccccccceeeeeeeeeecccccCeEEEEECC----CCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccC--
Q 043890 205 LRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVDVKPANME-- 276 (509)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 276 (509)
+ . +...+..++|+| +|++++++ .++.|.+||..+.+....+ ........
T Consensus 218 --------------------i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~~~g~~~~~~ 274 (543)
T 1nir_A 218 --------------------I-K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STRGMTVDTQ 274 (543)
T ss_dssp --------------------E-E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECCEECSSSC
T ss_pred --------------------E-e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-cccCcccCcc
Confidence 1 1 234578999999 99999888 4899999999887654432 11100001
Q ss_pred -CC-ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 277 -DL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 277 -~~-~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.| ...+.++.++|+++.++++...++.|.+||+.+.+.+. +..+.. ...+..+.|+|+|++++
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~~-------------~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIGA-------------APFLHDGGWDSSHRYFM 339 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEEC-------------CSSCCCEEECTTSCEEE
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEecc-------------CcCccCceECCCCCEEE
Confidence 12 23789999999886777888889999999998865321 112221 13577899999999877
Q ss_pred Ee-c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEE-EcCC-CCEEEEee-CCCcEEEEeCCC---
Q 043890 355 SR-D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC-LSGD-GLRVATGS-YSNLFRVFGCAP--- 426 (509)
Q Consensus 355 s~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iw~~~~--- 426 (509)
++ . +++|.+||+.+ ++++..+......-. .. .+. ++|+ +.+++++. .|++|.+||+.+
T Consensus 340 va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g~-----g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 340 TAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------GR-----GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp EEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------TT-----CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred EEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------CC-----CcccCCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 65 3 49999999997 677776664211100 00 222 4677 66677765 689999999998
Q ss_pred ----CceeeeeeccCCCceeEEEEcCCCCCCccc----------ceeeEeecCCCCCccc-C-CCc---ccccccceEEE
Q 043890 427 ----GSTEATTLEASKNPMRRQVQTPSRPSRSLS----------SITRVVRRGSDVPGVD-T-NGN---SFDFTTKLLHL 487 (509)
Q Consensus 427 ----~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~----------~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~i~~~ 487 (509)
.+.+. ++.+|...+..+.++|+++...+. ..+.+++......... + .+. .-...+.+.++
T Consensus 406 ~~~~~~~v~-~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 484 (543)
T 1nir_A 406 PQYAWKKVA-ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 484 (543)
T ss_dssp TTTBTSEEE-EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEE
T ss_pred chhcCeEEE-EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEec
Confidence 78887 999999999999999998774332 3556665332221111 0 000 00125789999
Q ss_pred EEcCCCcEEEEEe------cCceEEEeC
Q 043890 488 AWHPTENSIACAA------ANSLYMYYA 509 (509)
Q Consensus 488 ~~~p~~~~la~~~------~~~i~v~~~ 509 (509)
+|+|+|+.|+++. ++.|.||++
T Consensus 485 ~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 485 EYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred cCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 9999999999773 388999974
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=9.9e-26 Score=210.51 Aligned_cols=225 Identities=10% Similarity=0.107 Sum_probs=167.5
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|++++| +|||++|++|+.++ +++|++.+++...
T Consensus 20 ~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~------------------------------------------ 54 (355)
T 3vu4_A 20 NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIM------------------------------------------ 54 (355)
T ss_dssp CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEE------------------------------------------
T ss_pred CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceee------------------------------------------
Confidence 78999999 99999999988775 7899987653211
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
..+...+..+++.++++.++ ++ .|+.|++||+++++....+
T Consensus 55 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-------- 97 (355)
T 3vu4_A 55 -----------------------------SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-------- 97 (355)
T ss_dssp -----------------------------EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE--------
T ss_pred -----------------------------eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE--------
Confidence 11112366788888888875 45 7899999999987655432
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC-cccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS-ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.+...|.++.++++. ++++ .++.|++||+.+. +. +..+.. ....+++++ .+++
T Consensus 98 -~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~----~~~~~~---------------~~~~~~~s~--~~la 151 (355)
T 3vu4_A 98 -KVDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKR----ITDDIR---------------FGGVCEFSN--GLLV 151 (355)
T ss_dssp -ECSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCB----SSCCEE---------------EEEEEEEET--TEEE
T ss_pred -ECCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCcee----eEEecc---------------CCceEEEEc--cEEE
Confidence 256689999999864 3333 4789999999987 43 222221 233455666 5666
Q ss_pred E--ec-CCeEEEEECCCCC--------------Cc-eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 355 S--RD-YMTLKLWDINMDS--------------GP-VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 355 s--~~-~~~i~iwd~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
. |+ +|.|++||+.+.. .+ +..+.+|...+. +++|+|+|++|++|+.|
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~---------------~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK---------------MVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEECCCSSCEE---------------EEEECTTSSEEEEEETT
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE---------------EEEECCCCCEEEEEeCC
Confidence 5 34 5999999998632 12 667777876654 99999999999999999
Q ss_pred Cc-EEEEeCCCCceeeeeec-c-CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCC
Q 043890 417 NL-FRVFGCAPGSTEATTLE-A-SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTE 493 (509)
Q Consensus 417 g~-i~iw~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 493 (509)
++ |+|||+.+++++. .+. + |. ..|.+++|+|++
T Consensus 217 ~~~v~iwd~~~~~~~~-~~~~g~h~-------------------------------------------~~v~~~~~s~~~ 252 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVR-EFRRGLDR-------------------------------------------ADVVDMKWSTDG 252 (355)
T ss_dssp CSEEEEEETTTCCEEE-EEECTTCC-------------------------------------------SCEEEEEECTTS
T ss_pred CCEEEEEECCCCcEEE-EEEcCCCC-------------------------------------------CcEEEEEECCCC
Confidence 98 9999999999887 555 3 43 678999999999
Q ss_pred cEEEEEec-CceEEEeC
Q 043890 494 NSIACAAA-NSLYMYYA 509 (509)
Q Consensus 494 ~~la~~~~-~~i~v~~~ 509 (509)
++|++++. +.++||+.
T Consensus 253 ~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 253 SKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CEEEEEETTCEEEEEES
T ss_pred CEEEEEECCCEEEEEEc
Confidence 99999988 78999973
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=215.61 Aligned_cols=245 Identities=11% Similarity=0.082 Sum_probs=174.2
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee-ccCCcchhhccchhhhc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~ 118 (509)
...|.++.|+|+ +++|+.|+.|++|+...... ...... ......+ .+|. +
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~-------------~~~~~~-~~~~~~~~~~~~------------~ 126 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT-------------ILDSKT-NKVLREIEVDSA------------N 126 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-------------EEETTT-CCEEEEEECCCS------------S
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-------------EeecCC-cceeEEeecCCC------------C
Confidence 466778888888 99999999999998764221 000000 0111222 2444 6
Q ss_pred cceeeEEEEcC--CCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 119 KINKIRWCQTA--NGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 119 ~v~~l~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
.|.+++| +| ++++|++++.||.|++||+++++....
T Consensus 127 ~v~~~~~--~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---------------------------------------- 164 (343)
T 3lrv_A 127 EIIYMYG--HNEVNTEYFIWADNRGTIGFQSYEDDSQYIV---------------------------------------- 164 (343)
T ss_dssp CEEEEEC--CC---CCEEEEEETTCCEEEEESSSSCEEEE----------------------------------------
T ss_pred CEEEEEc--CCCCCCCEEEEEeCCCcEEEEECCCCcEEEE----------------------------------------
Confidence 7999999 88 999999999999999999987753211
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+...|...+.+++|+|++.+|++| .||.|++||+++++.... .+
T Consensus 165 ----------------------------~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~-------~~ 209 (343)
T 3lrv_A 165 ----------------------------HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS-------RF 209 (343)
T ss_dssp ----------------------------ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE-------EC
T ss_pred ----------------------------EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc-------EE
Confidence 113345569999999999999999 999999999998775411 34
Q ss_pred CC-CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccE--EEEEEecCCCE
Q 043890 276 ED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASI--SDIKFAKDGRH 352 (509)
Q Consensus 276 ~~-~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~ 352 (509)
.. |...|++++|+|++ .+|++++ ++.|++||+++.+.. ..+... ..|...+ .+++|+|+|++
T Consensus 210 ~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 210 PVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT----LAYPTY---------TIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp CCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC----BSSCCC---------BC-----CCEEEEECTTSSE
T ss_pred eccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc----eeeccc---------ccccccccceEEEECCCCCE
Confidence 55 89999999999998 9999999 559999999987642 222211 0111223 46999999999
Q ss_pred EEEe-c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC---CCCEEEEeeCCCcEEEEeCC
Q 043890 353 ILSR-D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG---DGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 353 l~s~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~ 425 (509)
|+++ . ++.++||++....+.... ..+ ..++|++ +.+.|++++.|+.+.++-..
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK-----DEE---------------SALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE-----EEE---------------EECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EEEecCCCCcEEEEEEcccccceEe-----cCc---------------eeEecCccccccceeEEEecCCceEEEEec
Confidence 9995 3 799999999763333222 111 1677888 88999999999999987644
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=7.1e-26 Score=215.78 Aligned_cols=218 Identities=16% Similarity=0.119 Sum_probs=154.4
Q ss_pred cccccCeEEEEECCCCCEEEEE-cCC---eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEE-EEEcC
Q 043890 227 HAHDYHINSISNNSDGETFISA-DDL---RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 301 (509)
Q Consensus 227 ~~~~~~v~~i~~~~~~~~l~~~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~-~~~~d 301 (509)
.+|...+.+++|+|+|+.|+++ .++ .|++||+++++.. .+..|...+.+++|+|++ +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 5677889999999999999988 554 9999999987642 334567789999999999 6666 66665
Q ss_pred C--eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC--C--eEEEEECCCCCCceEE
Q 043890 302 G--SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY--M--TLKLWDINMDSGPVAT 375 (509)
Q Consensus 302 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~ 375 (509)
+ .|++||+++++. ..+.. |...+.+++|+|||++|+++++ + .|++||+.+ ++ ...
T Consensus 245 g~~~i~~~d~~~~~~-----~~l~~------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~ 305 (415)
T 2hqs_A 245 GSLNLYVMDLASGQI-----RQVTD------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR 305 (415)
T ss_dssp SSCEEEEEETTTCCE-----EECCC------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred CCceEEEEECCCCCE-----EeCcC------------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence 5 499999988762 33322 2367899999999998887653 3 788889885 33 333
Q ss_pred EeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC---CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 376 FQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
+..+...+ ..++|+|||++|++++.+ ..|++||+.+++.. .+..+. .+..++|+|++..
T Consensus 306 l~~~~~~~---------------~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 306 ITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp CCCSSSEE---------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSS-SCEEEEECTTSSE
T ss_pred EecCCCcc---------------cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--EecCCC-CcCCeEEcCCCCE
Confidence 43333322 278999999999988764 58999999988764 555554 8999999999886
Q ss_pred CcccceeeEeecCCCCCcccCCCccc----ccccceEEEEEcCCCc
Q 043890 453 RSLSSITRVVRRGSDVPGVDTNGNSF----DFTTKLLHLAWHPTEN 494 (509)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~ 494 (509)
........ ....+..+++.+... .+...|.+++|+|...
T Consensus 368 l~~~s~~~---~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQG---MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEET---TEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEcCC---CccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 43221110 000233344443322 3467899999999764
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=6.8e-25 Score=226.11 Aligned_cols=327 Identities=8% Similarity=0.090 Sum_probs=219.2
Q ss_pred ccceEEEEECCCCCeEEeecC-CC-----eEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCc--chhhc
Q 043890 40 VDIISAIEFDKTGDHLATGDR-GG-----RVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEP--EFDYL 111 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~-dg-----~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~ 111 (509)
...|.+++|||||++||+++. |+ .|++||+.+++. ...+..+.. ....+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-----------------------~~~~~~~~~~~~~~~~ 92 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-----------------------RLLVDSKVVLPGTETL 92 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-----------------------EEEECGGGTC------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-----------------------eEccchhhcccccccc
Confidence 567999999999999999998 88 899999988765 111211110 00000
Q ss_pred ----------cchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccch---hhhhhhccCCCCCcccCCCCcccCCCC
Q 043890 112 ----------KSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEK---KVKKIADMNVDPSKAVGNGNVASSSNN 178 (509)
Q Consensus 112 ----------~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (509)
........|.+++| +|||++|++++. +.|.+||+.++ ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----------------------- 146 (741)
T 2ecf_A 93 SDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----------------------- 146 (741)
T ss_dssp --------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-----------------------
T ss_pred cchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-----------------------
Confidence 00000034889999 999999999987 89999999876 3211
Q ss_pred ccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEc
Q 043890 179 VSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNL 258 (509)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~ 258 (509)
+..|...+..++|+|+|++|+.+.++.|++||+
T Consensus 147 -----------------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~ 179 (741)
T 2ecf_A 147 -----------------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDL 179 (741)
T ss_dssp -----------------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEET
T ss_pred -----------------------------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEec
Confidence 144556789999999999999996679999999
Q ss_pred cCCCceeeEeeccCCccCCCcc----------------ceEEEEEeCCCCcEEEEEEcCC--------------------
Q 043890 259 EISNQSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG-------------------- 302 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~----------------~i~~l~~~~~~~~~l~~~~~dg-------------------- 302 (509)
.+++.. .+ ...+.. .+.+++|+||| +.|++++.|+
T Consensus 180 ~~g~~~-~~-------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 180 ASGRQM-QL-------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTTEEE-EC-------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCCCEE-Ee-------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 875432 11 111111 14789999999 8888887665
Q ss_pred -------------eEEEEECCC-CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec------CCeEE
Q 043890 303 -------------SIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD------YMTLK 362 (509)
Q Consensus 303 -------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~------~~~i~ 362 (509)
.|.+||+.+ ++. ..+... ..|...+..++| |||++|+++. +..|+
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~-----~~~~~~---------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQT-----QWIDLG---------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCC-----EEECCC---------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCce-----EEecCC---------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEE
Confidence 788899887 653 211110 123467999999 9999998642 26899
Q ss_pred EEECCCCCCceEEEeeccc-ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC-CCceeeeeeccCCCc
Q 043890 363 LWDINMDSGPVATFQVHEY-LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA-PGSTEATTLEASKNP 440 (509)
Q Consensus 363 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~ 440 (509)
+||+.+ ++....+..+.. .+. .+..++|+|||+++++++.||.++||.++ ++. .. .+..|...
T Consensus 316 ~~d~~~-g~~~~~~~~~~~~~~~------------~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~-~l~~~~~~ 380 (741)
T 2ecf_A 316 EVTLAS-NQQRVLAHETSPTWVP------------LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA-ALTHGNWS 380 (741)
T ss_dssp EEETTT-CCEEEEEEEECSSCCC------------CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE-ESCCSSSC
T ss_pred EEECCC-CceEEEEEcCCCCcCC------------cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee-eeeecceE
Confidence 999986 555555554432 110 01178999999999999999988888765 344 55 78888888
Q ss_pred eeEE-EEcCCCCCCccc---c---eeeEeec---CCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-----CceE
Q 043890 441 MRRQ-VQTPSRPSRSLS---S---ITRVVRR---GSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-----NSLY 505 (509)
Q Consensus 441 v~~~-~~s~~~~~~~~~---~---~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-----~~i~ 505 (509)
+..+ .|+|++...... + ..+.|.. +... ..+. ....+..++|+||+++|++... ..++
T Consensus 381 v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~--~~l~-----~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~ 453 (741)
T 2ecf_A 381 VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQP--QRLS-----KAPGMHSASFARNASVYVDSWSNNSTPPQIE 453 (741)
T ss_dssp EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCC--EECC-----CSCSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCe--eecc-----cCCCceEEEECCCCCEEEEEecCCCCCCeEE
Confidence 8887 599998753211 1 2233331 1111 1111 1356789999999999887654 2566
Q ss_pred EEe
Q 043890 506 MYY 508 (509)
Q Consensus 506 v~~ 508 (509)
+++
T Consensus 454 l~~ 456 (741)
T 2ecf_A 454 LFR 456 (741)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.1e-25 Score=214.45 Aligned_cols=262 Identities=12% Similarity=0.134 Sum_probs=196.5
Q ss_pred ceecccceEEEEECC--------------CCCeEEeecCC------CeEEEEEccCCCCCCCccccccccccccccCCcc
Q 043890 36 EVQEVDIISAIEFDK--------------TGDHLATGDRG------GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEF 95 (509)
Q Consensus 36 ~~~h~~~I~~v~~s~--------------~~~~la~g~~d------g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (509)
+.+|...+..+++++ .+..++.++.+ +.|++||++....
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--------------------- 171 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--------------------- 171 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---------------------
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---------------------
Confidence 456777777777765 15566665543 7999999975443
Q ss_pred eEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCC---eEEEEeccchhhhhhhccCCCCCcccCCCCc
Q 043890 96 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDK---TIKFWKVQEKKVKKIADMNVDPSKAVGNGNV 172 (509)
Q Consensus 96 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (509)
..+.+|. ..|.+++| +|+|++|++++.++ .|++||+.+++...
T Consensus 172 ---~~l~~~~------------~~v~~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----------------- 217 (415)
T 2hqs_A 172 ---FVVHRSP------------QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------------- 217 (415)
T ss_dssp ---EEEEEES------------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-----------------
T ss_pred ---EEEeCCC------------CcceeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-----------------
Confidence 5566676 67999999 99999999999875 99999998765321
Q ss_pred ccCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEE-EE-cC
Q 043890 173 ASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFI-SA-DD 250 (509)
Q Consensus 173 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d 250 (509)
+..|...+.+++|+|+|+.|+ ++ .+
T Consensus 218 -----------------------------------------------------l~~~~~~~~~~~~spdg~~la~~~~~~ 244 (415)
T 2hqs_A 218 -----------------------------------------------------VASFPRHNGAPAFSPDGSKLAFALSKT 244 (415)
T ss_dssp -----------------------------------------------------EECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred -----------------------------------------------------eecCCCcccCEEEcCCCCEEEEEEecC
Confidence 244566789999999999888 55 44
Q ss_pred C--eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CC--eEEEEECCCCcccCCceeeeccc
Q 043890 251 L--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDLRQSALCDSHAILFEEQ 325 (509)
Q Consensus 251 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 325 (509)
+ .|++||+++++.. .+..|...+.+++|+|++ +.|++++. ++ .|.+||+.+++. ..+..
T Consensus 245 g~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~- 308 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-----QRITW- 308 (415)
T ss_dssp SSCEEEEEETTTCCEE---------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-----EECCC-
T ss_pred CCceEEEEECCCCCEE---------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCE-----EEEec-
Confidence 4 5999999876531 456677889999999998 77877776 44 678889887652 22221
Q ss_pred cCCCCccccccccccEEEEEEecCCCEEEEec-C---CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeE
Q 043890 326 EAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFEC 401 (509)
Q Consensus 326 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 401 (509)
+...+.+++|+|+|++|++++ + ..|++||+.+ ++. ..+..+. .+ ..+
T Consensus 309 -----------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~ 359 (415)
T 2hqs_A 309 -----------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LD---------------ETP 359 (415)
T ss_dssp -----------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SC---------------EEE
T ss_pred -----------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-Cc---------------CCe
Confidence 225788999999999998864 2 5899999986 333 3444332 22 289
Q ss_pred EEcCCCCEEEEeeCCC---cEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 402 CLSGDGLRVATGSYSN---LFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 402 ~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
+|+|||++|++++.++ .|++||+. +.... .+..|.+.+..++|+|-..+
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~-~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA-RLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETT-SCCEE-ECCCSSSEEEEEEECCCCCC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECC-CCcEE-EeeCCCCCCcCCcccccccc
Confidence 9999999999998877 79999998 55555 88999999999999996543
No 129
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.4e-25 Score=216.16 Aligned_cols=239 Identities=10% Similarity=0.067 Sum_probs=186.9
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
.+|.+.|.+++|+|+++++++++.|+.|++||+.+++. ...+..|.
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-----------------------~~~~~~~~----------- 211 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY-----------------------KATVDLTG----------- 211 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECSS-----------
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------------EEEEcCCC-----------
Confidence 46888999999999999999999999999999987766 56666676
Q ss_pred hccceeeEEEEcCCCceEEEee-CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 117 EEKINKIRWCQTANGALFLLST-NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..+.+++| +|+++++++++ .|+.|++||+.+++....
T Consensus 212 -~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--------------------------------------- 249 (433)
T 3bws_A 212 -KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRK--------------------------------------- 249 (433)
T ss_dssp -SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEE---------------------------------------
T ss_pred -CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEE---------------------------------------
Confidence 67999999 89998886554 799999999987653221
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c--------CCeEEEEEccCCCceee
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D--------DLRINLWNLEISNQSFN 266 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~--------dg~i~iwd~~~~~~~~~ 266 (509)
..+...+.+++|+|++++++++ . |+.|++||+++++...
T Consensus 250 -------------------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~- 297 (433)
T 3bws_A 250 -------------------------------TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID- 297 (433)
T ss_dssp -------------------------------CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-
T ss_pred -------------------------------ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe-
Confidence 1122348899999999998887 3 6799999999765332
Q ss_pred EeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE
Q 043890 267 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (509)
...|...+.+++|+|++..++++++.++.|++||+++++. ...+.. ...+.+++|
T Consensus 298 --------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~~-------------~~~~~~~~~ 352 (433)
T 3bws_A 298 --------TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKSIPV-------------FDKPNTIAL 352 (433)
T ss_dssp --------EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEEEEC-------------SSSEEEEEE
T ss_pred --------eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEEecC-------------CCCCCeEEE
Confidence 2235568889999999844667778999999999998764 233332 257899999
Q ss_pred ecCCCEEEEec----------------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEE
Q 043890 347 AKDGRHILSRD----------------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV 410 (509)
Q Consensus 347 s~~~~~l~s~~----------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 410 (509)
+|+|+++++++ ||.|++||+.+ .+.+..+..+. .+ .+++|+|++++|
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~-~~---------------~~~~~s~dg~~l 415 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGN-QP---------------TGLDVSPDNRYL 415 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSS-SE---------------EEEEECTTSCEE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCC-CC---------------ceEEEcCCCCEE
Confidence 99999888764 24999999986 56666665432 22 289999999999
Q ss_pred EEeeC-CCcEEEEeCC
Q 043890 411 ATGSY-SNLFRVFGCA 425 (509)
Q Consensus 411 ~~~~~-dg~i~iw~~~ 425 (509)
++++. |+.|++|+++
T Consensus 416 ~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 416 VISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEETTTTEEEEEEET
T ss_pred EEEECCCCeEEEEEec
Confidence 98875 9999999986
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.6e-25 Score=238.51 Aligned_cols=381 Identities=9% Similarity=0.034 Sum_probs=244.8
Q ss_pred cceecccceEEEEECCCCCeEEeecCC------CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcch
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRG------GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEF 108 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~d------g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 108 (509)
.+..|...+.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~--- 99 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS--- 99 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC---
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC---
Confidence 345689999999999999999987543 4799999887654 4556665
Q ss_pred hhccchhhhccc-------eeeEEEEcCCCceEEEeeCC------CeEEEEeccchhhhhhhccCCCCCcccCCCCcccC
Q 043890 109 DYLKSLEIEEKI-------NKIRWCQTANGALFLLSTND------KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASS 175 (509)
Q Consensus 109 ~~~~~~~~~~~v-------~~l~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (509)
..+ ..++| +|||+.+++++.+ ..|.+|++.++............+.+.+ | ++..
T Consensus 100 ---------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~ 166 (1045)
T 1k32_A 100 ---------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVI 166 (1045)
T ss_dssp ---------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEE
T ss_pred ---------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEE
Confidence 445 88999 9999977777654 4678888877764433322211122222 2 1111
Q ss_pred ------------------------------------CCCccCCccccCCCCCcceecCCCCCCCccccccccccccceee
Q 043890 176 ------------------------------------SNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVA 219 (509)
Q Consensus 176 ------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 219 (509)
........|+++ .+.+....++.+++|.+.......
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d------~l~~~~~~dg~~~l~~~~~~g~~~-- 238 (1045)
T 1k32_A 167 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH------RIYFITDIDGFGQIYSTDLDGKDL-- 238 (1045)
T ss_dssp EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT------EEEEEECTTSSCEEEEEETTSCSC--
T ss_pred eccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC------EEEEEEeccCceEEEEEeCCCCcc--
Confidence 011111122222 233444555677888765422211
Q ss_pred eeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeecc---CCccCCCccceEEEEEe-CCCCcEE
Q 043890 220 RCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK---PANMEDLTEVITSAEFH-PTHCNML 295 (509)
Q Consensus 220 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~-~~~~~~l 295 (509)
+. +..|. .+...+|+|+|+.|+.+.++.|++|++.. ..+..+.... ......|...+.+++|+ |++ +.|
T Consensus 239 ---~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~l 311 (1045)
T 1k32_A 239 ---RK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLI 311 (1045)
T ss_dssp ---EE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCE
T ss_pred ---eE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCC-CEE
Confidence 11 13333 35677999999999988889999999843 3222110000 00111245578999999 998 888
Q ss_pred EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccc-cEEEEEEecCCCEEEEecC-CeEE-EEECCCCCCc
Q 043890 296 AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIA-SISDIKFAKDGRHILSRDY-MTLK-LWDINMDSGP 372 (509)
Q Consensus 296 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~-~~i~-iwd~~~~~~~ 372 (509)
++++ ++.|.+|++..+.. ..+.. |.. .+..++|+ ||+.|+++++ ..+. +||+.. ..
T Consensus 312 a~~~-~~~i~~~~~~~~~~-----~~~~~------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~- 370 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYV-----LKVPE------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK- 370 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBE-----EECSC------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-
T ss_pred EEEE-cCEEEEEcCCCCce-----EEccC------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-
Confidence 8877 78999999987652 22222 224 78999999 9999998765 7788 889875 33
Q ss_pred eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 373 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
...+..+...+ ..++|+|||++|++++.++.|++||+.+++... .+.+|...+..++|||+++.
T Consensus 371 ~~~l~~~~~~~---------------~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~-~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 371 AEKFEENLGNV---------------FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV-IERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp EEECCCCCCSE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSSCCCCEEECTTSCE
T ss_pred ceEecCCccce---------------eeeEECCCCCEEEEECCCCeEEEEECCCCceEE-eccCCCCCccceEECCCCCe
Confidence 33343443332 289999999999999999999999999998876 77789999999999999986
Q ss_pred Ccccceee----EeecCCCCCcccCCCccc----ccccceEEEEEcCCCcEEEEEec-CceEEE
Q 043890 453 RSLSSITR----VVRRGSDVPGVDTNGNSF----DFTTKLLHLAWHPTENSIACAAA-NSLYMY 507 (509)
Q Consensus 453 ~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~~la~~~~-~~i~v~ 507 (509)
........ .......+..+++.+... .+...+..++|+|++++|++++. +...+|
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 43221100 000001222233322111 23456788999999999998887 444444
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.9e-25 Score=198.67 Aligned_cols=161 Identities=10% Similarity=0.009 Sum_probs=117.8
Q ss_pred cccccCeEEEEECC---CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCC---ccceEEEEEeCCCCcEE----
Q 043890 227 HAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNML---- 295 (509)
Q Consensus 227 ~~~~~~v~~i~~~~---~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l---- 295 (509)
..|...++.++|++ ++.+|+++ .|++|+|||+++++.... +.+| ...+.+++|+|++ .++
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t--------L~g~~~~v~~v~~vafSpdG-~~lvs~s 245 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK--------MHIDDSYQASVCHKAYSEMG-LLFIVLS 245 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE--------EECCC---CCCEEEEEEETT-EEEEEEC
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE--------EcCCCcceeeeEEEEECCCC-CEEEEec
Confidence 56777888899988 77999999 999999999999876543 2332 3467888999998 665
Q ss_pred --------EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEEC
Q 043890 296 --------AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDI 366 (509)
Q Consensus 296 --------~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~ 366 (509)
++|+.|++|++||..+++. +..+...- ..+|...+.+..+ ++.++++++ |++|+|||+
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~tgk~----l~v~~~~~-------p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKTTLS----VGVMLYCL-------PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp ------------CCEEEEEEETTTTEE----EEEEEECC-------CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred cCCCcceeeccCCCcEEEEEECCCCEE----EEEEEeec-------cCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC
Confidence 6688899999999998874 22221000 0123333444444 488899986 699999999
Q ss_pred CCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 367 NMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
.+ ++++.++.+|...+. ..++|+|||++|++|+.|++|+|||+
T Consensus 313 ~t-Gk~l~tL~gH~~~vv--------------s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LL-GQCTALLPPVSDQHW--------------SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TT-CSEEEEECCC--CCC--------------CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CC-CcEEEEecCCCCCeE--------------EEEEECCCCCEEEEEECCCcEEEecC
Confidence 97 788999988865432 15899999999999999999999985
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.3e-23 Score=216.06 Aligned_cols=325 Identities=10% Similarity=0.030 Sum_probs=207.5
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
.+.+++|+|||+++++ +.||.|++||+.+++. ...+.+|... ...|.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----------------------~~~~~~~~~~---------~~~v~ 64 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----------------------TVLIEGKKIE---------SLRAI 64 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----------------------EEEECTTTTT---------TTTCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----------------------EEEecccccc---------ccccc
Confidence 4678999999998877 6799999999998876 4455555410 01489
Q ss_pred eeEEEEcCCCceEEEeeCC---------CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 122 KIRWCQTANGALFLLSTND---------KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
+++| +|||++|++++.+ +.+.+||+.+++......
T Consensus 65 ~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---------------------------------- 108 (723)
T 1xfd_A 65 RYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP---------------------------------- 108 (723)
T ss_dssp EEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC----------------------------------
T ss_pred eEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC----------------------------------
Confidence 9999 9999999999774 788899998775321100
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccC
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..+|...+..++|+|+|+.|+.+.++.|++||+.+++... +.
T Consensus 109 ---------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~-~~---- 150 (723)
T 1xfd_A 109 ---------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR-VV---- 150 (723)
T ss_dssp ---------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE-EE----
T ss_pred ---------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCceEE-Ee----
Confidence 1234445778899999999999966899999998765432 11
Q ss_pred CccCCCcc------------------ceEEEEEeCCCCcEEEEEEcCC--------------------------------
Q 043890 273 ANMEDLTE------------------VITSAEFHPTHCNMLAYSSSKG-------------------------------- 302 (509)
Q Consensus 273 ~~~~~~~~------------------~i~~l~~~~~~~~~l~~~~~dg-------------------------------- 302 (509)
..+.. .+.+++|+||| +.|++++.++
T Consensus 151 ---~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 151 ---STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp ---CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred ---cCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 11111 33789999999 8888877543
Q ss_pred --eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----C-CeEEEEECCCCCCceEE
Q 043890 303 --SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----Y-MTLKLWDINMDSGPVAT 375 (509)
Q Consensus 303 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~~~~~~~ 375 (509)
.|++||+.+++. ...+..+. ....+...+..++|+|||+++++.. + ..|++||+.+ ++....
T Consensus 227 ~~~l~~~d~~~~~~----~~~l~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~ 295 (723)
T 1xfd_A 227 SISLHVIGLNGPTH----DLEMMPPD------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKK 295 (723)
T ss_dssp EEEEEEEESSSSCC----CEECCCCC------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEE
T ss_pred eeEEEEEECCCCce----eEEeeCCc------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEE
Confidence 688888877652 12222110 1112346789999999999887652 2 6799999986 555554
Q ss_pred Eeec-ccccccccccccCCCccceeeEEEcCCCCEEEEe--eCCC------cEEEEe-CCCCce--eeeeeccCCCcee-
Q 043890 376 FQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG--SYSN------LFRVFG-CAPGST--EATTLEASKNPMR- 442 (509)
Q Consensus 376 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg------~i~iw~-~~~~~~--~~~~~~~~~~~v~- 442 (509)
+..+ ...+.. . ...++|+|||+.|+.. ..++ .|++|| ...++. .. .+..+...+.
T Consensus 296 ~~~~~~~~~~~---------~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~l~~~~~~~~~ 363 (723)
T 1xfd_A 296 HEDESEAWLHR---------Q--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ-SITSGDWDVTK 363 (723)
T ss_dssp EEEECSSCCCC---------C--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC-BSCCSSSCEEE
T ss_pred EEeccCCEEec---------c--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee-EeecCCeEEEe
Confidence 4332 222110 0 0167999999987754 4566 577788 444441 43 4544333444
Q ss_pred EEEEcCCCCCCccc------ceeeEeecC--CCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 443 RQVQTPSRPSRSLS------SITRVVRRG--SDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 443 ~~~~s~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
.++|+|+++..... ...+.+... .......+.+. +.+...+..++|+|++++|+....
T Consensus 364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEEEECTTSSEEEEECC
T ss_pred eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-ccCCCCeEEEEECCCCCEEEEEcc
Confidence 46899998864221 112333311 10011111110 002455889999999999887644
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=3.3e-23 Score=203.30 Aligned_cols=319 Identities=12% Similarity=0.069 Sum_probs=208.3
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEc--cCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 43 ISAIEFDKTGDHLATGDRGGRVVLFER--TDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 43 I~~v~~s~~~~~la~g~~dg~i~lw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
+.+++|+|+|++|++++.|+.|++||+ .+++. ...+..+ ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----------------------~~~i~~g-------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----------------------VAEIKIG-------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----------------------EEEEECC-------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----------------------EEEEecC-------------CCc
Confidence 889999999999999999999999999 55544 3444432 347
Q ss_pred eeeEEEEcC----CCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 121 NKIRWCQTA----NGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 121 ~~l~~~~~~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..++| +| +|+++++++. +++|.+||..+++............ ++..+........+.+++++.. +
T Consensus 225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----~~~~~~~~~~v~~i~~s~~~~~----~ 294 (543)
T 1nir_A 225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----DTQTYHPEPRVAAIIASHEHPE----F 294 (543)
T ss_dssp EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS----SSCCEESCCCEEEEEECSSSSE----E
T ss_pred ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc----CccccccCCceEEEEECCCCCE----E
Confidence 89999 99 9999999885 8999999998877655433211000 0000000011223455665543 2
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCC
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 273 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~ 273 (509)
.++....+.|.+||....+..... . ..+...+.++.|+|+|++|+++ .++.|.+||+.+++....+ ..
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~----~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i-~~--- 364 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVT----S--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV-DV--- 364 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEE----E--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-EC---
T ss_pred EEEECCCCeEEEEEecCCCcceeE----E--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee-cc---
Confidence 334456678888887665432211 1 2345567889999999987655 6899999999987644322 11
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCCCcc---cCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQSAL---CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
....|......+ ++|++..+++++. .|++|.+||+.+..- ..+.++++..+ ...+..++++|+
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~------------g~~~~~v~~~pd 431 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ------------GGGSLFIKTHPK 431 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS------------CSCCCCEECCTT
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC------------CCCceEEEcCCC
Confidence 112354433333 5787536777775 589999999987220 12224555443 356788999999
Q ss_pred CCEEEEec--------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-----CC
Q 043890 350 GRHILSRD--------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-----YS 416 (509)
Q Consensus 350 ~~~l~s~~--------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d 416 (509)
+++|+++. +++|.+||+.+.......+..... ..+. +.-..+..+.|+|+|+.|+++. .|
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~-----~~~~--~~~~~~~~~~~~~~g~~~~~s~~~~~~~~ 504 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW-----ADLG--EGAKRVVQPEYNKRGDEVWFSVWNGKNDS 504 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH-----HCCC--SSCCEEEEEEECSSSSEEEEEEECCTTSC
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhh-----cccC--CCCCceEeccCCCCCCEEEEEeecCCCCC
Confidence 99999975 469999999974333244421100 0000 0011133899999999998763 47
Q ss_pred CcEEEEeCCCCceeeeeeccCC
Q 043890 417 NLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~~~ 438 (509)
+.|.|||.++++++. +++.+.
T Consensus 505 ~~i~v~D~~t~~~~~-~i~~~~ 525 (543)
T 1nir_A 505 SALVVVDDKTLKLKA-VVKDPR 525 (543)
T ss_dssp CEEEEEETTTTEEEE-EECCTT
T ss_pred CeEEEEECCCceEEE-eecCCC
Confidence 999999999999987 777543
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.2e-23 Score=224.07 Aligned_cols=370 Identities=9% Similarity=0.042 Sum_probs=243.9
Q ss_pred eecccceEEEEECCCCCeEEeecCCCeEEEEEccCCC-CCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTK-DHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
.+|...+.++.|+++ .++++++.++.+.||.+.... . ...+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~-----------------------~~~l~~~~---------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD-----------------------LRKHTSFT---------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS-----------------------CEECCCCC----------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc-----------------------ceEecCCC----------
Confidence 468899999999998 777888888999999876422 2 13333343
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccc-cCCCCCcce
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYL-ANGGSPSKE 194 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 194 (509)
.+..++| +|||++|+++ .++.|.+|++...... ....... ........+......+.|+ |+|+.+...
T Consensus 246 ---~~~~~~~--SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~----~~~~~~~~~~~~v~~~~~S~pdG~~la~~ 314 (1045)
T 1k32_A 246 ---DYYPRHL--NTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDL----ESPEDRIISIPSKFAEDFSPLDGDLIAFV 314 (1045)
T ss_dssp ---SSCEEEE--EESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCC----CBCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred ---CcceeeE--cCCCCEEEEE-eCCEEEEecCCceEee-eeccCcc----cccccccccccccceeeecCCCCCEEEEE
Confidence 3566788 8999999887 4899999998433222 1110000 0000111122345667899 999876322
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeeccccc-CeEEEEECCCCCEEEEE-cCCeEE-EEEccCCCceeeEeecc
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEISNQSFNIVDVK 271 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~-~dg~i~-iwd~~~~~~~~~~~~~~ 271 (509)
. .+.+.+|++....... +..|.. .+..++|+ +|+.|+.+ .++.+. +|++.+++..
T Consensus 315 ~------~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~------- 372 (1045)
T 1k32_A 315 S------RGQAFIQDVSGTYVLK--------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE------- 372 (1045)
T ss_dssp E------TTEEEEECTTSSBEEE--------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-------
T ss_pred E------cCEEEEEcCCCCceEE--------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-------
Confidence 1 4567777765543211 245565 78999999 99999988 777888 8898865421
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR 351 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 351 (509)
.+..|...+..++|+|++ ++|++++.++.|++||+.+++. ...+.. |...+.+++|+|||+
T Consensus 373 --~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~----~~~~~~------------~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 373 --KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP----TVIERS------------REAMITDFTISDNSR 433 (1045)
T ss_dssp --ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEEC------------SSSCCCCEEECTTSC
T ss_pred --EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce----EEeccC------------CCCCccceEECCCCC
Confidence 233677889999999998 9999999999999999998763 222222 336788999999999
Q ss_pred EEEEecC-----------CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEE
Q 043890 352 HILSRDY-----------MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 420 (509)
Q Consensus 352 ~l~s~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 420 (509)
+|++++. +.|++||+.+ ++ ...+..+..... .++|+|||++|++++.++...
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~---------------~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHDY---------------APAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBEE---------------EEEECTTSCEEEEEESCCCCC
T ss_pred eEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcccC---------------CceEcCCCCEEEEEecccCCc
Confidence 9988642 3899999986 33 555555543322 789999999999999887777
Q ss_pred EEeCCCCce------------------------------------------eeeeeccCCCceeEEEEcCCCCCCcccc-
Q 043890 421 VFGCAPGST------------------------------------------EATTLEASKNPMRRQVQTPSRPSRSLSS- 457 (509)
Q Consensus 421 iw~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~~~~~~- 457 (509)
+|+...... ....+..|.+.+..+.++|++.......
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~ 576 (1045)
T 1k32_A 497 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 576 (1045)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC
T ss_pred CcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecc
Confidence 666432211 0013344556777888888764321100
Q ss_pred ------eeeEeecCCCCCcccCCCccc-ccccceEEEEEcCCCcEEEEEecCceEEEeC
Q 043890 458 ------ITRVVRRGSDVPGVDTNGNSF-DFTTKLLHLAWHPTENSIACAAANSLYMYYA 509 (509)
Q Consensus 458 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~la~~~~~~i~v~~~ 509 (509)
..........+..+++..... .....+..++|+||++.|++++.+.+++|++
T Consensus 577 ~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~~~~~i~~~d~ 635 (1045)
T 1k32_A 577 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 635 (1045)
T ss_dssp CCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCEEEEEcCCcEEEEeC
Confidence 000000111222233333221 1225688999999999999999999999974
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.4e-22 Score=186.08 Aligned_cols=282 Identities=9% Similarity=0.062 Sum_probs=185.0
Q ss_pred EEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeE
Q 043890 46 IEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 124 (509)
Q Consensus 46 v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 124 (509)
+.|.++++ +++++..++.|++||..+++. ...+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-----------------------LNQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce-----------------------eeeEEccC------------Ccc-eEE
Confidence 45666654 477788889999999988776 34444333 445 899
Q ss_pred EEEcCCCceEEEeeC-CCeEEEEeccchhh-hhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC
Q 043890 125 WCQTANGALFLLSTN-DKTIKFWKVQEKKV-KKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI 202 (509)
Q Consensus 125 ~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 202 (509)
| +|+++++++++. ++.|.+||+.+++. ...
T Consensus 47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------------- 78 (331)
T 3u4y_A 47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---------------------------------------------- 78 (331)
T ss_dssp E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEE----------------------------------------------
T ss_pred E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEe----------------------------------------------
Confidence 9 999997777665 89999999987653 111
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC-C--eEEEEEccCCCceeeEeeccCCccCCC
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD-L--RINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
...+..+..+++|+|++++++++ .+ + .|.+||+++++.... +. .
T Consensus 79 -----------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--------~~-~ 126 (331)
T 3u4y_A 79 -----------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST--------IP-I 126 (331)
T ss_dssp -----------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE--------EE-C
T ss_pred -----------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE--------EE-C
Confidence 12333444448999999999966 44 3 999999987654322 11 2
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCe-EEEEECCCCcccCCc-eeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDLRQSALCDSH-AILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.....+++|+|++..++++...++. |.+|++......... ...+. .......++|+|+|++++.+
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS-------------GGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC-------------SSSSEEEEEECTTSSEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc-------------CCCCccceEECCCCCEEEEE
Confidence 3456899999999335555566688 999999865421100 01111 11457899999999976654
Q ss_pred -c-CCeEEEEECCCCCCc---eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCCCCcee
Q 043890 357 -D-YMTLKLWDINMDSGP---VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCAPGSTE 430 (509)
Q Consensus 357 -~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~ 430 (509)
. ++.|++||+.+ .+. +..+..+... ..++|+|||++|+.++ .++.|.+||+.+++..
T Consensus 194 ~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 194 NLIGNSIGILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp ETTTTEEEEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred eCCCCeEEEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 3 49999999986 565 5555433211 1799999999776654 5788999999988763
Q ss_pred ee-eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec--CceEEE
Q 043890 431 AT-TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA--NSLYMY 507 (509)
Q Consensus 431 ~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~--~~i~v~ 507 (509)
.. .+..+. .+... .......++|+|++++|++++. +.+.||
T Consensus 257 ~~~~~~~~~---------------------------------~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 257 FVKSFGHGL---------------------------------LIDPR---PLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp EEEEEECCC---------------------------------CCCCG---GGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeccccccc---------------------------------ccCCC---CcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 20 111110 00000 0112367999999998887765 589999
Q ss_pred eC
Q 043890 508 YA 509 (509)
Q Consensus 508 ~~ 509 (509)
+.
T Consensus 301 d~ 302 (331)
T 3u4y_A 301 TI 302 (331)
T ss_dssp ET
T ss_pred Ee
Confidence 74
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=4.1e-22 Score=186.27 Aligned_cols=256 Identities=9% Similarity=0.024 Sum_probs=181.4
Q ss_pred cccceEEEEECCCCCeEEeecC-------CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDR-------GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYL 111 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~-------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 111 (509)
....+..++|+|++++|++++. ++.|.+||..+++. ...+...
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~------- 88 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-----------------------TQAIHND------- 88 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-----------------------EEEEEES-------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-----------------------EEEEecC-------
Confidence 4567889999999998888774 56899999988765 3333322
Q ss_pred cchhhhccceeeEEEEcCCCceEEEe-eCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLS-TNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..+..+.| ++++++++.+ ..++.|.+||..+++...........
T Consensus 89 ------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------------------------- 133 (353)
T 3vgz_A 89 ------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK--------------------------- 133 (353)
T ss_dssp ------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC---------------------------
T ss_pred ------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc---------------------------
Confidence 34788999 9999866555 55799999999887643321110000
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE---cCCeEEEEEccCCCceeeE
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~dg~i~iwd~~~~~~~~~~ 267 (509)
. ........+.+++|+|+++.++++ .++.|.+||+++++....
T Consensus 134 ---------------------~------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~- 179 (353)
T 3vgz_A 134 ---------------------R------------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA- 179 (353)
T ss_dssp ---------------------C------------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE-
T ss_pred ---------------------c------------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE-
Confidence 0 000011126789999999987765 378999999987664432
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
+..+...+.+++|+|++ +.+++++.++.|.+||+.+++. ...+.... .++...+..++|+
T Consensus 180 -------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~----~~~~~~~~--------~~~~~~~~~~~~s 239 (353)
T 3vgz_A 180 -------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKI----LSRKKLLD--------DGKEHFFINISLD 239 (353)
T ss_dssp -------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEE----EEEEECCC--------SSSCCCEEEEEEE
T ss_pred -------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeE----EEEEEcCC--------CCCCcccceEEEC
Confidence 22234457789999998 8888899999999999998864 23333211 0122467889999
Q ss_pred cCCCEEEEec-C-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeC
Q 043890 348 KDGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGC 424 (509)
Q Consensus 348 ~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 424 (509)
|+|++++.++ + +.|.+||+.+ .+.+..+...... .++|+|++++|+.++ .++.|.+||+
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-----------------~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPESL-----------------AVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSCC-----------------CEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCc-----------------eEEECCCCCEEEEEECCCCeEEEEEC
Confidence 9999877753 3 8999999986 6666666543321 789999999766555 6899999999
Q ss_pred CCCceee
Q 043890 425 APGSTEA 431 (509)
Q Consensus 425 ~~~~~~~ 431 (509)
.+++.+.
T Consensus 302 ~~~~~~~ 308 (353)
T 3vgz_A 302 KSYKVVK 308 (353)
T ss_dssp TTTEEEE
T ss_pred CCCeEEE
Confidence 9988776
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=9.8e-23 Score=185.33 Aligned_cols=255 Identities=13% Similarity=0.169 Sum_probs=176.4
Q ss_pred eecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCCceEEE
Q 043890 57 TGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLL 136 (509)
Q Consensus 57 ~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s 136 (509)
.++.++.|++||+.+++. ..+..|. ..|.+++| +|++++|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~--spdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNW--SPDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEE--CCCCCEEEE
Confidence 456789999999987765 3444555 67999999 999999998
Q ss_pred eeCCCeEEEEeccc-hhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccccccccc
Q 043890 137 STNDKTIKFWKVQE-KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNET 215 (509)
Q Consensus 137 ~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 215 (509)
++ ++.|.+||+.+ ++....
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~----------------------------------------------------------- 78 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKV----------------------------------------------------------- 78 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEEC-----------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEe-----------------------------------------------------------
Confidence 86 78999999987 643221
Q ss_pred ceeeeeeeeeeccc-ccCeEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCC
Q 043890 216 SLVARCRRVYAHAH-DYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 291 (509)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 291 (509)
...+ ...+.+++|+|++++|+++ . ++...+|.++....... .+..+ ..+..++|+|++
T Consensus 79 ----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~-~~~~~~~~spdg 140 (297)
T 2ojh_A 79 ----------DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTKN-LPSYWHGWSPDG 140 (297)
T ss_dssp ----------CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCSS-SSEEEEEECTTS
T ss_pred ----------ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------EeecC-CCccceEECCCC
Confidence 1122 3457789999999999887 3 24555555542221111 22222 348899999998
Q ss_pred CcEEE-EEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCC
Q 043890 292 CNMLA-YSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINM 368 (509)
Q Consensus 292 ~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~ 368 (509)
+.|+ ++..++.+++|+++..... ...+. .+...+.+++|+|+|++|+.+. ++.++||++..
T Consensus 141 -~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 141 -KSFTYCGIRDQVFDIYSMDIDSGV---ETRLT------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp -SEEEEEEEETTEEEEEEEETTTCC---EEECC------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred -CEEEEEECCCCceEEEEEECCCCc---ceEcc------------cCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 6555 7888999999986532210 22222 2235789999999999887653 58899998874
Q ss_pred CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----------CcEEEEeCCCCceeee-eecc
Q 043890 369 DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----------NLFRVFGCAPGSTEAT-TLEA 436 (509)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~-~~~~ 436 (509)
.......+..+...+ ..++|+|++++|++++.+ +.|++||+.+++.... .+.+
T Consensus 205 ~~~~~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 269 (297)
T 2ojh_A 205 DGSSVERITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG 269 (297)
T ss_dssp TSSCEEECCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred CCCCcEEEecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence 355666665554332 278999999999988876 5699999987765430 1112
Q ss_pred CCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec
Q 043890 437 SKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA 501 (509)
Q Consensus 437 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 501 (509)
| ...+..++|+|++++|++++.
T Consensus 270 ~-------------------------------------------~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 270 G-------------------------------------------QGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp S-------------------------------------------TTTSCSCCBCTTSSEEEEEEE
T ss_pred C-------------------------------------------CcccccceECCCCCEEEEEEe
Confidence 2 245778899999999888876
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.5e-22 Score=205.80 Aligned_cols=276 Identities=9% Similarity=0.061 Sum_probs=185.8
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..|.+++| +|| ++++.+ .++.|++||+.+++....
T Consensus 82 ~~v~~~~~--spd-~~~~~~-~~~~i~~~d~~~~~~~~l----------------------------------------- 116 (706)
T 2z3z_A 82 FPSFRTLD--AGR-GLVVLF-TQGGLVGFDMLARKVTYL----------------------------------------- 116 (706)
T ss_dssp CCCEEEEE--TTT-TEEEEE-ETTEEEEEETTTTEEEEE-----------------------------------------
T ss_pred cCceeEEE--CCC-CeEEEE-ECCEEEEEECCCCceEEc-----------------------------------------
Confidence 45899999 999 566655 459999999987653221
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccC-----CCceeeEeeccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKP 272 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~ 272 (509)
..+...+.+++|+|+|+.|+++.++.|++||+.+ ++... +
T Consensus 117 -----------------------------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~-~----- 161 (706)
T 2z3z_A 117 -----------------------------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA-V----- 161 (706)
T ss_dssp -----------------------------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE-S-----
T ss_pred -----------------------------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE-e-----
Confidence 2334456778999999999999889999999987 54321 1
Q ss_pred CccCCCcc--------------ceEEEEEeCCCCcEEEEEE---------------------------------cCCeEE
Q 043890 273 ANMEDLTE--------------VITSAEFHPTHCNMLAYSS---------------------------------SKGSIR 305 (509)
Q Consensus 273 ~~~~~~~~--------------~i~~l~~~~~~~~~l~~~~---------------------------------~dg~i~ 305 (509)
...+.. .+.++.|+||| ++|++++ .+..|.
T Consensus 162 --~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 162 --TIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp --CSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred --ccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 111112 25789999999 8888887 346799
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CC-----eEEEEECCCCCCceEEEeec
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YM-----TLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~-----~i~iwd~~~~~~~~~~~~~~ 379 (509)
+||+.+++. ..+.. ...|...+..++|+|||++|++++ ++ .|++||+.+ ++....+...
T Consensus 239 ~~d~~~~~~-----~~~~~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~ 303 (706)
T 2z3z_A 239 IYHLATGKT-----VYLQT---------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVE 303 (706)
T ss_dssp EEETTTTEE-----EECCC---------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEE
T ss_pred EEECCCCce-----Eeecc---------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEc
Confidence 999988763 11110 012335789999999999888753 33 899999986 4333333321
Q ss_pred ccccccccccccCCCccceeeEEEcC--CCCEEEEeeCCCcEEEEeCC-CCceeeeeeccCCCceeE-EEEcCCCCCCcc
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSG--DGLRVATGSYSNLFRVFGCA-PGSTEATTLEASKNPMRR-QVQTPSRPSRSL 455 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~~ 455 (509)
..... +..+..+.|+| ||++|++++.|+.++||.++ ++..+. .+..|...+.. ++|+|++.....
T Consensus 304 ~~~~~----------~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~-~l~~~~~~v~~~~~~spdg~~l~~ 372 (706)
T 2z3z_A 304 TDKHY----------VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR-QVTKGEWEVTNFAGFDPKGTRLYF 372 (706)
T ss_dssp ECSSC----------CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE-ECCCSSSCEEEEEEECTTSSEEEE
T ss_pred cCCCe----------ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE-ecCCCCeEEEeeeEEcCCCCEEEE
Confidence 11100 00011689999 99999999999999999886 566666 77778777876 799999875322
Q ss_pred cce------eeEeecCCCCCcccCCCc---ccccccceEEEEEcCCCcEEEEEec-----CceEEEeC
Q 043890 456 SSI------TRVVRRGSDVPGVDTNGN---SFDFTTKLLHLAWHPTENSIACAAA-----NSLYMYYA 509 (509)
Q Consensus 456 ~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~p~~~~la~~~~-----~~i~v~~~ 509 (509)
... ...+. +++.+. .+.+...+..++|+|++++|+.... ..+++|++
T Consensus 373 ~~~~~~~~~~~l~~-------~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 373 ESTEASPLERHFYC-------IDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EESSSCTTCBEEEE-------EETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EecCCCCceEEEEE-------EEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 110 12221 222111 1223466889999999999887654 34888873
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.1e-21 Score=182.60 Aligned_cols=212 Identities=11% Similarity=0.158 Sum_probs=136.1
Q ss_pred ccceeeEEEEcCCCceEEEeeCC-CeEEEEecc--chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTND-KTIKFWKVQ--EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
..+..++| +|++++|++++.+ +.|.+|++. +++....
T Consensus 38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-------------------------------------- 77 (343)
T 1ri6_A 38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-------------------------------------- 77 (343)
T ss_dssp SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------------------------------
T ss_pred CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeec--------------------------------------
Confidence 56899999 9999999988886 999999997 3321111
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..+ ..+ ..+..++|+|++++|+++ .++.|.+||+..+.. ....
T Consensus 78 ----------------------------~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~---- 122 (343)
T 1ri6_A 78 ----------------------------AES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-VGVV---- 122 (343)
T ss_dssp ----------------------------EEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-EEEE----
T ss_pred ----------------------------ccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc-cccc----
Confidence 011 112 257889999999987665 589999999952221 1111
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCC-CcccCCcee--eeccccCCCCccccccccccEEEEEEec
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQ-SALCDSHAI--LFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
..+. ....+.+++|+|++ +++++++ .++.|.+||+.+ ++... .. .+... ....+..++|+|
T Consensus 123 ~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~p 187 (343)
T 1ri6_A 123 DVVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVA--QDPAEVTTV-----------EGAGPRHMVFHP 187 (343)
T ss_dssp EEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEEECS-----------TTCCEEEEEECT
T ss_pred cccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceee--ecccccccC-----------CCCCcceEEECC
Confidence 0122 23457889999998 7777776 899999999987 54210 01 11111 113678899999
Q ss_pred CCCEEEEec--CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEe-eCCCcEEEEeCC
Q 043890 349 DGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATG-SYSNLFRVFGCA 425 (509)
Q Consensus 349 ~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~ 425 (509)
+++++++++ ++.|.+||+......+............ + .....+..++|+|++++|+++ ..++.|.+|++.
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN----F--SDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT----C--CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc----c--cccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 999776543 5999999996422222211111100000 0 001112268999999988754 478999999998
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=5.5e-21 Score=173.70 Aligned_cols=236 Identities=11% Similarity=0.097 Sum_probs=166.4
Q ss_pred cceecccceEEEEECCCCCeEEeecCCCeEEEEEccC-CCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 35 EEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTD-TKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 35 ~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.+..|...|.+++|+|+|++||+++ ++.|++||+.+ ++. ......|..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----------------------~~~~~~~~~------- 84 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----------------------EKVDTGFAT------- 84 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----------------------EECCCTTCC-------
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----------------------eEecccccc-------
Confidence 3456889999999999999999987 78999999988 665 333334421
Q ss_pred hhhhccceeeEEEEcCCCceEEEee--CCCeEEEEecc--chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLST--NDKTIKFWKVQ--EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~--~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
..+.+++| +|++++|++++ .++..+||.++ ++....
T Consensus 85 ----~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------- 124 (297)
T 2ojh_A 85 ----ICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRL---------------------------------- 124 (297)
T ss_dssp ----CBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEE----------------------------------
T ss_pred ----ccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEE----------------------------------
Confidence 56899999 99999999998 44566666654 222100
Q ss_pred CCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeE
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~ 267 (509)
+.. ...+..++|+|+++.|+ ++ .++.+++|+++......
T Consensus 125 ------------------------------------~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-- 165 (297)
T 2ojh_A 125 ------------------------------------MTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-- 165 (297)
T ss_dssp ------------------------------------CCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE--
T ss_pred ------------------------------------eec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc--
Confidence 011 22377889999999887 56 78999999975432211
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (509)
..+..+...+.+++|+|++ +.|++++ .++.+++|+++.... ....+.. |...+..++|
T Consensus 166 -----~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~------------~~~~~~~~~~ 224 (297)
T 2ojh_A 166 -----TRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS---SVERITD------------SAYGDWFPHP 224 (297)
T ss_dssp -----EECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS---CEEECCC------------CSEEEEEEEE
T ss_pred -----eEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC---CcEEEec------------CCcccCCeEE
Confidence 1345677889999999998 7666655 589999998863221 1233322 2357889999
Q ss_pred ecCCCEEEEec-C-----------CeEEEEECCCCCCceE--EEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 347 AKDGRHILSRD-Y-----------MTLKLWDINMDSGPVA--TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 347 s~~~~~l~s~~-~-----------~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
+|+|++|++++ + +.|++||+.+ ++... .+..|...+. .++|+|++++|++
T Consensus 225 s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~---------------~~~~spdg~~l~~ 288 (297)
T 2ojh_A 225 SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTMN---------------SPNWSPDGDEFAY 288 (297)
T ss_dssp CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTSC---------------SCCBCTTSSEEEE
T ss_pred CCCCCEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCcccc---------------cceECCCCCEEEE
Confidence 99999988763 2 4699999986 44432 3334444433 7899999999998
Q ss_pred eeCCC
Q 043890 413 GSYSN 417 (509)
Q Consensus 413 ~~~dg 417 (509)
++.+.
T Consensus 289 ~~~~~ 293 (297)
T 2ojh_A 289 VRYFP 293 (297)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 87654
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.1e-20 Score=173.80 Aligned_cols=283 Identities=12% Similarity=0.100 Sum_probs=177.5
Q ss_pred eecccceEEEEECCCCCeEEeecCC-CeEEEEEcc--CCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDRG-GRVVLFERT--DTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~d-g~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..|...+.+++|+|+|++|++++.+ +.|++|+++ +++. .....+..+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~--------- 83 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------TFAAESALP--------- 83 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------------------EEEEEEECS---------
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---------------------eeccccccC---------
Confidence 4577889999999999988888876 999999997 3332 012222222
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..+..++| +|++++|++++. ++.|.+||+.++.....
T Consensus 84 ----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~------------------------------------ 121 (343)
T 1ri6_A 84 ----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGV------------------------------------ 121 (343)
T ss_dssp ----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEE------------------------------------
T ss_pred ----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccc------------------------------------
Confidence 35889999 999998877765 88999999953211000
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeec
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
.+. ......+.+++|+|++++++++ .++.|++||+.+..........
T Consensus 122 -----------------------------~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 122 -----------------------------VDV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp -----------------------------EEE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred -----------------------------ccc--ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 001 1122347789999999877765 6999999999873322211000
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEE-EEEcCCeEEEEECCC--CcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDLRQ--SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~-~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
. ........+..++|+|++ ++++ ++..++.|.+||++. ++. .....+.... .. ......+..++|+
T Consensus 171 -~-~~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~--~~~~~~~~~~--~~----~~~~~~~~~i~~s 239 (343)
T 1ri6_A 171 -E-VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNI--ECVQTLDMMP--EN----FSDTRWAADIHIT 239 (343)
T ss_dssp -E-EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCC--EEEEEEECSC--TT----CCSCCCEEEEEEC
T ss_pred -c-cccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcE--EEEeeccccC--cc----ccccCCccceEEC
Confidence 0 011123567889999998 6555 444789999999964 321 1011111000 00 0012357789999
Q ss_pred cCCCEEEEe-c-CCeEEEEECCCCCC---ceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEE
Q 043890 348 KDGRHILSR-D-YMTLKLWDINMDSG---PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRV 421 (509)
Q Consensus 348 ~~~~~l~s~-~-~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i 421 (509)
|+|++|+++ . ++.|.+||+..... .+..+..+.. + ..++|+|+|++|++++ .++.|.+
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-P---------------RGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-C---------------CCEEECTTSSEEEEECTTTCEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-c---------------ceEEECCCCCEEEEecCCCCeEEE
Confidence 999988754 3 59999999984222 2222322222 1 1899999999888887 6899999
Q ss_pred EeC--CCCceee-eeeccCCCceeEEEEcCCC
Q 043890 422 FGC--APGSTEA-TTLEASKNPMRRQVQTPSR 450 (509)
Q Consensus 422 w~~--~~~~~~~-~~~~~~~~~v~~~~~s~~~ 450 (509)
|++ .+++... ..+... .....+++.++.
T Consensus 304 ~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 304 YEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp EEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred EEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 955 4664322 133332 334566666543
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=9.9e-22 Score=196.46 Aligned_cols=244 Identities=13% Similarity=0.040 Sum_probs=163.4
Q ss_pred cccceEEEEECCCCCeEEeecC-CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGDHLATGDR-GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+..+|.+++|+|||+.||+++. ||+++||++++++. ..+..|..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~~----------- 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREPI----------- 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSCC-----------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeecccc-----------
Confidence 4678999999999999999887 99999999866544 33333331
Q ss_pred ccceeeEEEEcCCCceEEEeeC---CCeEEEEeccc--hhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 118 EKINKIRWCQTANGALFLLSTN---DKTIKFWKVQE--KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..+..+.| +|| +.+++++. +...++|.+.. ......
T Consensus 65 ~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~------------------------------------ 105 (582)
T 3o4h_A 65 NSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR------------------------------------ 105 (582)
T ss_dssp SEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE------------------------------------
T ss_pred cccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCcccc------------------------------------
Confidence 36889999 888 77777765 45667776643 110000
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC--EEEEEcCCeEEEEEccCCCceeeEeec
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
+... ..+...+|+|+++ .++++.++.+.+||+.+++.. .
T Consensus 106 ---------------------------------l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-~---- 146 (582)
T 3o4h_A 106 ---------------------------------LEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-E---- 146 (582)
T ss_dssp ---------------------------------CTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-E----
T ss_pred ---------------------------------ccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-E----
Confidence 0001 1123456777764 444555555569999876532 1
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcC----CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF 346 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (509)
+..+.. .+++|+||| ++|++++.+ +.|++||+.+++. +.+.. |...+..++|
T Consensus 147 ----l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~------------~~~~~~~~~~ 202 (582)
T 3o4h_A 147 ----LARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDS------------GEGSFSSASI 202 (582)
T ss_dssp ----EEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECC------------SSCEEEEEEE
T ss_pred ----eecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeec------------CCCccccceE
Confidence 111222 789999999 899988776 7899999998763 33332 2367899999
Q ss_pred ecCCCEEEEec-CC--eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 347 AKDGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 347 s~~~~~l~s~~-~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
+|||+.|++++ ++ .|++||+.+ ++.. .+..+...+..+. .......+|+|||.++++++.|+.++||+
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 99999999765 36 899999986 4544 5555544332100 00000223999999999999999999999
Q ss_pred CCCCcee
Q 043890 424 CAPGSTE 430 (509)
Q Consensus 424 ~~~~~~~ 430 (509)
+ |+..
T Consensus 274 ~--g~~~ 278 (582)
T 3o4h_A 274 D--GERV 278 (582)
T ss_dssp T--TEEE
T ss_pred E--CCee
Confidence 9 6544
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=6.1e-20 Score=169.85 Aligned_cols=255 Identities=11% Similarity=0.115 Sum_probs=166.4
Q ss_pred cccceEEEEECCCCCeEEeecC-CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGDHLATGDR-GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+...+ +++|+|+|++|++++. ++.|.+||+.+++. ....+..+.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------~~~~~~~~~------------ 83 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------KVVAIQEGQ------------ 83 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------EEEEEEECS------------
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------eEEecccCC------------
Confidence 34556 9999999996666554 88999999987653 023333333
Q ss_pred ccceeeEEEEcCCCceEEEeeCCC---eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 118 EKINKIRWCQTANGALFLLSTNDK---TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
....+++| +|++++|+++..++ .|.+||+.+++....
T Consensus 84 ~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~-------------------------------------- 123 (331)
T 3u4y_A 84 SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST-------------------------------------- 123 (331)
T ss_dssp SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEE--------------------------------------
T ss_pred CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEE--------------------------------------
Confidence 33444999 99999999555553 899999987653221
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCe-EEEEEccCCCceeeEeecc
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~-i~iwd~~~~~~~~~~~~~~ 271 (509)
........+++|+|+|++++++ .++. |.+|++..........
T Consensus 124 --------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--- 168 (331)
T 3u4y_A 124 --------------------------------IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--- 168 (331)
T ss_dssp --------------------------------EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE---
T ss_pred --------------------------------EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC---
Confidence 1112335789999999865554 5678 9999998654432211
Q ss_pred CCccCCCccceEEEEEeCCCCcEE-EEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 272 PANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
.........+..++|+|++ +++ +++..++.|.+||+.+++.. ..+..+... ..+..++|+|||
T Consensus 169 -~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~~-------------~~~~~~~~spdg 232 (331)
T 3u4y_A 169 -QEFISGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENI-TLLNAVGTN-------------NLPGTIVVSRDG 232 (331)
T ss_dssp -EEEECSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEECS-------------SCCCCEEECTTS
T ss_pred -CccccCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccCC-------------CCCceEEECCCC
Confidence 0111234557899999998 644 55556899999999887631 112333322 356789999999
Q ss_pred CEEEEec--CCeEEEEECCCCCCc--eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEEeCC
Q 043890 351 RHILSRD--YMTLKLWDINMDSGP--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVFGCA 425 (509)
Q Consensus 351 ~~l~s~~--~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 425 (509)
++++.+. ++.|.+||+.+ ++. +..+..+-.. . .........++|+||+++|++++. ++.|.+||+.
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLI-D-------PRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp SEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCC-C-------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEcCCCEEEEEECCC-Cceeeeccccccccc-C-------CCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 9777653 48899999986 443 2222211000 0 001110125899999998876654 6799999998
Q ss_pred CCc
Q 043890 426 PGS 428 (509)
Q Consensus 426 ~~~ 428 (509)
...
T Consensus 304 ~~~ 306 (331)
T 3u4y_A 304 GKV 306 (331)
T ss_dssp SCE
T ss_pred CCc
Confidence 654
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.4e-20 Score=173.82 Aligned_cols=272 Identities=10% Similarity=0.111 Sum_probs=169.5
Q ss_pred eecccceEEEEECCCCCeEEeecC---CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 37 VQEVDIISAIEFDKTGDHLATGDR---GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g~~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
..+...+..++|+|+|+ |++++. ++.|++|++.+++. ..+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------~~~~~~~~~~-------- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------HKLNTVVAPG-------- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------------EEEEEEEEES--------
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------------EEeeeeecCC--------
Confidence 34667788899999999 554443 68999999976543 0123333343
Q ss_pred hhhhccceeeEEEEcCCCceEEEee-CCCeEEEEeccc-hhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLST-NDKTIKFWKVQE-KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..+..++| +|+|++|++++ .++.|.+|++.. +........... +
T Consensus 86 ----~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------------------~--- 131 (347)
T 3hfq_A 86 ----TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------------------------G--- 131 (347)
T ss_dssp ----CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------------------C---
T ss_pred ----CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------------------------C---
Confidence 56889999 99999998888 689999999963 221111000000 0
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeec
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~ 270 (509)
... ....+...+.+++|+|+|+++++. .++.|++|++........+...
T Consensus 132 --------~~p----------------------~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 132 --------HGP----------------------RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp --------CCS----------------------STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred --------CCC----------------------CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 000 001123458889999999966666 7899999999843322211100
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEE-EEEcCCeEEEEECCC--CcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDLRQ--SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~-~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.......+..++|+|++ ++++ +...++.|.+|++.. ++. .....+.... .. . .....+..++|+
T Consensus 182 ----~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~--~~~~~~~~~~--~~---~-~~~~~~~~i~~s 248 (347)
T 3hfq_A 182 ----TMEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAF--TQLGIVKTIP--AD---Y-TAHNGAAAIRLS 248 (347)
T ss_dssp ----ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESSC--TT---C-CSCCEEEEEEEC
T ss_pred ----EcCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCce--EEeeeeeecC--CC---C-CCCCcceeEEEC
Confidence 11123357789999999 6444 456789999999885 331 1111111110 00 0 001358899999
Q ss_pred cCCCEEEE-ec-CCeEEEEECCCCC--CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC-CcEEEE
Q 043890 348 KDGRHILS-RD-YMTLKLWDINMDS--GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-NLFRVF 422 (509)
Q Consensus 348 ~~~~~l~s-~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw 422 (509)
|||++|++ .. ++.|.+||+...+ ..+..+..+..... .++|+|||++|++++.+ +.|.+|
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPR---------------DFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCC---------------EEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcC---------------eEEECCCCCEEEEEEcCCCcEEEE
Confidence 99998855 33 5999999997422 22233333222222 89999999998888764 899999
Q ss_pred --eCCCCcee
Q 043890 423 --GCAPGSTE 430 (509)
Q Consensus 423 --~~~~~~~~ 430 (509)
|..+|+..
T Consensus 314 ~~d~~tg~l~ 323 (347)
T 3hfq_A 314 ARDLTSGKLS 323 (347)
T ss_dssp EECTTTCCEE
T ss_pred EEeCCCCeEE
Confidence 55566654
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=4.3e-21 Score=197.77 Aligned_cols=281 Identities=10% Similarity=0.117 Sum_probs=186.5
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCC---CCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDT---KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
.|.+++|||||++|++++. +.|++||+.++ +. ..+..|. .
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~------------------------~~l~~~~------------~ 152 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV------------------------RQLTHGE------------G 152 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC------------------------CBCCCSS------------S
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE------------------------EEcccCC------------c
Confidence 4889999999999999886 89999999887 43 3344554 5
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.+..++| +|||++|++++. +.|.+||+.+++........... +. .|
T Consensus 153 ~~~~~~~--SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~--------~~-------------~g---------- 198 (741)
T 2ecf_A 153 FATDAKL--SPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTT--------IG-------------NG---------- 198 (741)
T ss_dssp CEEEEEE--CTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSS--------EE-------------ES----------
T ss_pred ccccccC--CCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccc--------ee-------------cc----------
Confidence 6899999 999999998874 59999999887643321100000 00 00
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCC--------------------------
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDL-------------------------- 251 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg-------------------------- 251 (509)
+.-|. .......+..++|+|||++|+++ .|+
T Consensus 199 ------~~~~v----------------~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 199 ------IAEFV----------------ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ------CCCHH----------------HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ------cccee----------------eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 00000 00111235678999999988887 554
Q ss_pred -------eEEEEEccC-CCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-----CCeEEEEECCCCcccCCc
Q 043890 252 -------RINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDLRQSALCDSH 318 (509)
Q Consensus 252 -------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~ 318 (509)
.|++||+.+ ++... + .....|...+..++| ||+ +.|++++. +..|++||+.+++.
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~-~-----~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~---- 324 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQW-I-----DLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQ---- 324 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEE-E-----CCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCE----
T ss_pred CCCCCeeEEEEEECCCCCceEE-e-----cCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCce----
Confidence 788889887 55321 1 011257788999999 999 77776654 56799999998863
Q ss_pred eeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccc
Q 043890 319 AILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFD 397 (509)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
...+..+.. .....+..++|+|||+++++++ ++.++||.+...+. ...+..+...+.
T Consensus 325 ~~~~~~~~~--------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~------------- 382 (741)
T 2ecf_A 325 RVLAHETSP--------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD------------- 382 (741)
T ss_dssp EEEEEEECS--------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE-------------
T ss_pred EEEEEcCCC--------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE-------------
Confidence 223322210 0001346789999999888775 47777777653344 566655543322
Q ss_pred eeeE-EEcCCCCEEEEe-eCCC--cEEEEeCCC-CceeeeeeccCCCceeEEEEcCCCCCC
Q 043890 398 KFEC-CLSGDGLRVATG-SYSN--LFRVFGCAP-GSTEATTLEASKNPMRRQVQTPSRPSR 453 (509)
Q Consensus 398 v~~~-~~s~~~~~l~~~-~~dg--~i~iw~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~ 453 (509)
.+ .|+|+++.|+.. +.++ .++||++.. +..+. .+.. ...+..+.|||++...
T Consensus 383 --~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~-~l~~-~~~~~~~~~spdg~~l 439 (741)
T 2ecf_A 383 --ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ-RLSK-APGMHSASFARNASVY 439 (741)
T ss_dssp --EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE-ECCC-SCSEEEEEECTTSSEE
T ss_pred --eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee-eccc-CCCceEEEECCCCCEE
Confidence 55 599999977654 4455 899999864 55454 5655 5667899999998764
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=9.6e-20 Score=169.71 Aligned_cols=175 Identities=11% Similarity=0.081 Sum_probs=109.3
Q ss_pred ccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCc----cCCCccceEEEEEeCCCCcEEEEEEcC
Q 043890 228 AHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSK 301 (509)
Q Consensus 228 ~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~~~~~~~l~~~~~d 301 (509)
.+...+..++|+|+|++|+++ .++.|.+|++........+....... ...+...+.+++|+|++ +++++...+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~ 161 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGS 161 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCC
Confidence 345567889999999987776 68999999996433222211110000 01123458899999999 666666678
Q ss_pred CeEEEEECC-CCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECCCCCCceEE---
Q 043890 302 GSIRLIDLR-QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDINMDSGPVAT--- 375 (509)
Q Consensus 302 g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~~~~~~~~~--- 375 (509)
+.|.+||+. .+++. ....+.... ...+..++|+|||++++++ . ++.|.+|++......+..
T Consensus 162 ~~v~~~~~~~~g~~~--~~~~~~~~~-----------g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLS--EQSVLTMEA-----------GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp TEEEEEEECTTSCEE--EEEEEECCT-----------TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEECCCCcEE--EeeeEEcCC-----------CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 999999998 44321 011111110 1357789999999977764 3 489999998842222222
Q ss_pred EeecccccccccccccCCCccceeeEEEcCCCCEEE-EeeCCCcEEEEeCC
Q 043890 376 FQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA-TGSYSNLFRVFGCA 425 (509)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~ 425 (509)
+....... .....+..++|+|||++|+ +...++.|.+|++.
T Consensus 229 ~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 229 VKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 21111100 0001123799999999875 55568999999987
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3.5e-21 Score=178.62 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=154.1
Q ss_pred CeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeec-cCCcchhhccchhhhc-cceeeEEEEcCC
Q 043890 53 DHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQTAN 130 (509)
Q Consensus 53 ~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~l~~~~~~~ 130 (509)
++|++++.++.|++||..+++. ...+. ++. . .+..++| +|+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~--s~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMV--APG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEE--CTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEE--cCC
Confidence 5789999999999999987765 33333 221 1 4788999 999
Q ss_pred CceEE-EeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccc
Q 043890 131 GALFL-LSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPT 209 (509)
Q Consensus 131 ~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 209 (509)
+++++ ++..++.|.+||+.+++.........
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------------------------ 76 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLST------------------------------------------------ 76 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------------------------------------------
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC------------------------------------------------
Confidence 97765 45567899999998775332211000
Q ss_pred ccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-------------cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 210 VTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
...+...+.+++|+|+|++++++ .++.|.+||+.+++....+ .
T Consensus 77 ----------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--------~ 132 (337)
T 1pby_B 77 ----------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF--------E 132 (337)
T ss_dssp ----------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE--------E
T ss_pred ----------------cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE--------e
Confidence 00012246678999999988877 2699999999876543221 1
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
....+.+++|+|++ ++|+++ ++.|.+||+.+++. ...+...... . .+.|+|+++.++..
T Consensus 133 -~~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~----~~~~~~~~~~----------~---~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 133 -APRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTL----VEDKPIQSWE----------A---ETYAQPDVLAVWNQ 191 (337)
T ss_dssp -CCSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEE----EEEECSTTTT----------T---TTBCCCBCCCCCCC
T ss_pred -CCCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcE----eeeeeccccC----------C---CceeCCCccEEeee
Confidence 13456788999998 767766 68899999998764 2333322100 1 12678888866553
Q ss_pred c-C-C-----------------------eEEEEECCCCCCceEEEee--cccccccccccccCCCccceeeEEEcCCCCE
Q 043890 357 D-Y-M-----------------------TLKLWDINMDSGPVATFQV--HEYLRPKLCDLYENDSIFDKFECCLSGDGLR 409 (509)
Q Consensus 357 ~-~-~-----------------------~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 409 (509)
. . + .|.+||+.+ .+.. .+.. +... +..++|+|++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~-~~~~~~~~~~---------------~~~~~~s~dg~~ 254 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-GEMA-MREVRIMDVF---------------YFSTAVNPAKTR 254 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-CCEE-EEEEEECSSC---------------EEEEEECTTSSE
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCC-CCce-EeecCCCCCc---------------eeeEEECCCCCE
Confidence 2 1 2 478999986 4443 2222 2211 127999999999
Q ss_pred EEEeeCCCcEEEEeCCCCceee
Q 043890 410 VATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 410 l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
|+++ ++.|++||+.+++.+.
T Consensus 255 l~~~--~~~v~~~d~~~~~~~~ 274 (337)
T 1pby_B 255 AFGA--YNVLESFDLEKNASIK 274 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEE
T ss_pred EEEe--CCeEEEEECCCCcCcc
Confidence 9988 7999999999887765
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=7.5e-21 Score=195.17 Aligned_cols=329 Identities=11% Similarity=0.006 Sum_probs=199.4
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeE
Q 043890 45 AIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 124 (509)
Q Consensus 45 ~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 124 (509)
+++|+|+|++++++ .|+.|++||+.+++. ...+.+|.. . ...+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~-----------------------~~~~~~~~~-----~----~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS-----------------------YTILSNRTM-----K----SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE-----------------------EEEECHHHH-----H----TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE-----------------------EEEEccccc-----c----ccceeeEE
Confidence 78999999777765 589999999998876 333333320 0 01388999
Q ss_pred EEEcCCCceEEEeeC---------CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 125 WCQTANGALFLLSTN---------DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 125 ~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
| +|||++|++++. ++.|++||+.+++....
T Consensus 67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~--------------------------------------- 105 (719)
T 1z68_A 67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG--------------------------------------- 105 (719)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------------------------
T ss_pred E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------------------------
Confidence 9 999999999876 78999999988763110
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
......+..++|+|||+.|+.+.++.|++|++.+++... + ..
T Consensus 106 -------------------------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l------~~ 147 (719)
T 1z68_A 106 -------------------------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-I------TF 147 (719)
T ss_dssp -------------------------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-C------CC
T ss_pred -------------------------------eecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-E------ec
Confidence 000123667899999999999978899999998765421 1 11
Q ss_pred CCCccce-----------------EEEEEeCCCCcEEEEEEcCC----------------------------------eE
Q 043890 276 EDLTEVI-----------------TSAEFHPTHCNMLAYSSSKG----------------------------------SI 304 (509)
Q Consensus 276 ~~~~~~i-----------------~~l~~~~~~~~~l~~~~~dg----------------------------------~i 304 (509)
.++...| .+++|+||| +.|++++.|. .|
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 2222212 489999999 8888887652 78
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-----CeEEEEE----CCCCCCceEE
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-----MTLKLWD----INMDSGPVAT 375 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd----~~~~~~~~~~ 375 (509)
++||+.+++.... ..+.. ...+.+|...+..++|+||++++++..+ ..|.+|| +.+ ++....
T Consensus 227 ~~~d~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~ 297 (719)
T 1z68_A 227 FIIDTTYPAYVGP--QEVPV------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKT 297 (719)
T ss_dssp EEEESSCHHHHCC--EECCC------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGG
T ss_pred EEEECCCCCccce--eEccC------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEE
Confidence 8999887652100 01100 0112345578999999999887777421 3588899 664 333333
Q ss_pred E----eecccccccccccccCCCccceeeEEEcCCCCEEEE--eeCCC--cEEEEeCCCCceeeeeeccCCCceeEEEEc
Q 043890 376 F----QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT--GSYSN--LFRVFGCAPGSTEATTLEASKNPMRRQVQT 447 (509)
Q Consensus 376 ~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s 447 (509)
+ ..+...+.. .. ...+.|+|||+.|+. ...+| .|++|++.+++. . .+..+...+..+.++
T Consensus 298 ~~~~~~~~~~~~~~-------~~---~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~-~lt~~~~~v~~~~~~ 365 (719)
T 1z68_A 298 QEHIEESRTGWAGG-------FF---VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-I-QITSGKWEAINIFRV 365 (719)
T ss_dssp GEEEEECSSSCSSS-------SS---CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-E-ECSCSSSCEEEEEEE
T ss_pred EecccccCCceEcc-------cc---CCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-E-ecccCceEEEEEEEE
Confidence 3 233332210 00 005789999996654 44455 677788877663 3 565566566666666
Q ss_pred CCCCCCccc--------ceeeEeec---CCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec----CceEEEe
Q 043890 448 PSRPSRSLS--------SITRVVRR---GSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA----NSLYMYY 508 (509)
Q Consensus 448 ~~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~----~~i~v~~ 508 (509)
++...... ...+.+.. +.......+......+...+..++|+|++++++.... ..+++|+
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 44432111 11222221 1100001111100012345778999999988885433 2455554
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=2.4e-20 Score=191.05 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=186.8
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
..|.+++|||| +.++.+. ++.|++||+.+++. ..+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV------------------------TYLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence 56999999999 6665554 58999999987654 3333444 568
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccc-----hhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCccee
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQE-----KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEF 195 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 195 (509)
..++| +|||++|+++ .|+.|++|++.+ ++........... +.
T Consensus 124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~--------~~---------------------- 170 (706)
T 2z3z_A 124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET--------LV---------------------- 170 (706)
T ss_dssp TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT--------EE----------------------
T ss_pred cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC--------eE----------------------
Confidence 89999 9999999985 689999999987 5533221100000 00
Q ss_pred cCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c-------------------------
Q 043890 196 SFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D------------------------- 249 (509)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------------------------- 249 (509)
+-.. . ...+...+.++.|+|||++|+++ .
T Consensus 171 ------------~g~~------------~-~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y 225 (706)
T 2z3z_A 171 ------------YGQA------------V-HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY 225 (706)
T ss_dssp ------------ESSC------------C-GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred ------------cccc------------h-hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence 0000 0 02223446788999999998876 2
Q ss_pred --------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC-----eEEEEECCCCcccC
Q 043890 250 --------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDLRQSALCD 316 (509)
Q Consensus 250 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~ 316 (509)
+..|++||+.+++... + .....|...+.+++|+|++ +.|++++.++ .|.+||+.+++.
T Consensus 226 ~~~g~~~~~~~l~~~d~~~~~~~~-~-----~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-- 296 (706)
T 2z3z_A 226 PMAGTPSHHVTVGIYHLATGKTVY-L-----QTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-- 296 (706)
T ss_dssp CBTTSCCCEEEEEEEETTTTEEEE-C-----CCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE--
T ss_pred CCCCCCCCeeEEEEEECCCCceEe-e-----ccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce--
Confidence 2579999998765321 1 1123567789999999998 8888877775 899999998732
Q ss_pred CceeeeccccCCCCccccccccccEEEEEEec--CCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCC
Q 043890 317 SHAILFEEQEAPGSRSFFTEIIASISDIKFAK--DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEND 393 (509)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
...+....... ....+..++|+| ||+++++++ ++.++||++...+..+..+..+...+.
T Consensus 297 --~~~~~~~~~~~-------~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~--------- 358 (706)
T 2z3z_A 297 --VRTLFVETDKH-------YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT--------- 358 (706)
T ss_dssp --EEEEEEEECSS-------CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE---------
T ss_pred --eeEEEEccCCC-------eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE---------
Confidence 12222111000 001246789999 999988875 488888887643566666655543321
Q ss_pred Cccceee-EEEcCCCCEEEEeeC-CC----cEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCC
Q 043890 394 SIFDKFE-CCLSGDGLRVATGSY-SN----LFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSR 453 (509)
Q Consensus 394 ~~~~v~~-~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 453 (509)
. ++|+|+++.|+.++. ++ .|+.||+.+++. . .+. |...+..++|||+++..
T Consensus 359 ------~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~-~l~-~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 359 ------NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K-DLT-PESGMHRTQLSPDGSAI 415 (706)
T ss_dssp ------EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E-ESC-CSSSEEEEEECTTSSEE
T ss_pred ------eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e-ecc-CCCceEEEEECCCCCEE
Confidence 4 799999998876654 44 677778777653 2 343 66778999999998763
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=9e-21 Score=181.05 Aligned_cols=230 Identities=9% Similarity=0.035 Sum_probs=155.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
+...++.+++++++.+|++|+.++ ++||+.......... .+.........+ ...+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~~~~~~~~-----------------~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP---GDDPNKIVDKVQ-----------------GLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT---TCCTTCEEECCC-----------------CEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc---ccCcccccccCc-----------------cccccCCC
Confidence 345689999999999999999887 999987543220000 000000000000 01112226
Q ss_pred cceeeEEEEcCCCceEE----EeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 119 KINKIRWCQTANGALFL----LSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~----s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
.|++++| ++++++|+ +++.|+.|++||+.++....... ...
T Consensus 94 ~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~--~~~------------------------------- 138 (434)
T 2oit_A 94 PIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ--KRP------------------------------- 138 (434)
T ss_dssp CEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS--CCC-------------------------------
T ss_pred cccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcCC--cce-------------------------------
Confidence 7999999 99999999 78899999999997652100000 000
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCC-CCEEEEE-cCCeEEEEEccCCCceeeEeeccC
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
....+. +.+|...|.+++|+|+ +++|+++ .||.|++||++++....
T Consensus 139 ------------------------~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~------- 186 (434)
T 2oit_A 139 ------------------------FAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC------- 186 (434)
T ss_dssp ------------------------SEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE-------
T ss_pred ------------------------eeeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee-------
Confidence 000011 3678999999999998 7899999 99999999999864322
Q ss_pred CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE
Q 043890 273 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 273 ~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 352 (509)
....|...|.+++|+|++ ++|++|+.||.|++||++ ++. ...+..+.. ...+|...+.+++|++++.+
T Consensus 187 -~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~-----~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 187 -ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPF-----YESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp -EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTT-----CCTTSCEEEEEEEEEETTEE
T ss_pred -eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCcc-----cCCCCceeEEEEEEecCceE
Confidence 234588899999999998 999999999999999998 332 233332210 11133458999999999988
Q ss_pred EEEe--cCC------eEEEEECCC
Q 043890 353 ILSR--DYM------TLKLWDINM 368 (509)
Q Consensus 353 l~s~--~~~------~i~iwd~~~ 368 (509)
+++. .+| .+++||++.
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEEccCCCccCCCCceEEEEecc
Confidence 8763 222 499999986
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=2.2e-19 Score=184.29 Aligned_cols=259 Identities=11% Similarity=0.086 Sum_probs=166.8
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 42 IISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
...++.|+|||++|+++ ||.|++||+.+++. ...+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----------------------SVFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----------------------EEEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce-----------------------EEEEechhhh-------hhccccc
Confidence 45689999999999997 89999999998876 4556666511 0001224
Q ss_pred eeEEEEcCCCceEEEeeCC---------CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 122 KIRWCQTANGALFLLSTND---------KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
.+.| ||||++|+.++.+ +.+.+||+.+++...+
T Consensus 66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------------ 107 (740)
T 4a5s_A 66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------------ 107 (740)
T ss_dssp EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------------------------------------
T ss_pred ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc------------------------------------
Confidence 4778 9999999998876 5667999988763321
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccC
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP 272 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~ 272 (509)
..|...+...+|+|||+.||.+.++.|++|++.+++.. .+
T Consensus 108 ----------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~-~l----- 147 (740)
T 4a5s_A 108 ----------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY-RI----- 147 (740)
T ss_dssp ----------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE-EC-----
T ss_pred ----------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE-EE-----
Confidence 34455688999999999999997789999999876532 11
Q ss_pred CccCCCccce-----------------EEEEEeCCCCcEEEEEEcCC---------------------------------
Q 043890 273 ANMEDLTEVI-----------------TSAEFHPTHCNMLAYSSSKG--------------------------------- 302 (509)
Q Consensus 273 ~~~~~~~~~i-----------------~~l~~~~~~~~~l~~~~~dg--------------------------------- 302 (509)
...++...+ .++.|+||| +.|+..+.|.
T Consensus 148 -t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 148 -TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp -CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred -cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 222222222 358999999 8888775432
Q ss_pred ---eEEEEECCC---CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----C-CeEEEEECCCCCC
Q 043890 303 ---SIRLIDLRQ---SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----Y-MTLKLWDINMDSG 371 (509)
Q Consensus 303 ---~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~~~ 371 (509)
.|++||+.+ ++.. . ...+... ..+.+|...+..++|+|||+.++... + ..|++||+.+ ++
T Consensus 226 ~~~~l~v~d~~~~~~~~~~-~-~~~l~~~------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~ 296 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNA-T-SIQITAP------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SS 296 (740)
T ss_dssp CEEEEEEEETTSCCSSSCC-C-EEEECCC------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TT
T ss_pred CeeEEEEEECCCCCCCCcc-e-EEEecCC------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Cc
Confidence 355555555 3100 0 1111100 00112556799999999999776542 2 4799999987 34
Q ss_pred ------ceEEE--eecccccccccccccCCCccceeeEEEcCCCCEEE-EeeC-C--CcEEEEeCCCCceee
Q 043890 372 ------PVATF--QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA-TGSY-S--NLFRVFGCAPGSTEA 431 (509)
Q Consensus 372 ------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~~~~ 431 (509)
.+..+ ..+...+.. .. .....|+|||+.|+ ..+. + ..|++|++.+++...
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~-------~~---~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGR-------FR---PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSS-------SS---CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred cccceeEEEEeeeccCCceEcc-------Cc---CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 11222 223333210 00 11578999999877 6654 3 468889988766553
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=3.7e-20 Score=172.61 Aligned_cols=261 Identities=8% Similarity=0.045 Sum_probs=174.4
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeE
Q 043890 45 AIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 124 (509)
Q Consensus 45 ~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 124 (509)
.++++++++++++++.++.|++||..+++. ...+..+.. ..+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~-----------~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK-----------FGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC-----------CSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCCC-----------CCCceeE
Confidence 356888999999999999999999987765 334432220 2477899
Q ss_pred EEEcCCCceEE-EeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCC
Q 043890 125 WCQTANGALFL-LSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIP 203 (509)
Q Consensus 125 ~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 203 (509)
| +|++++++ +...++.|.+||+.+++..........
T Consensus 50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~----------------------------------------- 86 (349)
T 1jmx_B 50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV----------------------------------------- 86 (349)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS-----------------------------------------
T ss_pred E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc-----------------------------------------
Confidence 9 99998665 445689999999987754322110000
Q ss_pred ccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC------------CeEEEEEccCCCceeeEeec
Q 043890 204 SLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD------------LRINLWNLEISNQSFNIVDV 270 (509)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d------------g~i~iwd~~~~~~~~~~~~~ 270 (509)
...+...+..++|+|+|++|+++ .+ +.|.+||+.+++....+
T Consensus 87 ----------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--- 141 (349)
T 1jmx_B 87 ----------------------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--- 141 (349)
T ss_dssp ----------------------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---
T ss_pred ----------------------cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee---
Confidence 00002236678999999999988 54 99999999874422110
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCC----------------cc--
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGS----------------RS-- 332 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------------~~-- 332 (509)
....+...+.+++|+|++ + +++++ +.|.+||+.+++. ...+........ ..
T Consensus 142 ---~~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 142 ---RTFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKY----TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp ---EEEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCE----EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred ---eeccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCce----eccccccccCCccccCccceeeecCCCcceeE
Confidence 111233467889999998 6 44443 3499999988764 222221110000 00
Q ss_pred --------------------------------------ccccccccEEEEEEec-CCCEEEEecCCeEEEEECCCCCCce
Q 043890 333 --------------------------------------FFTEIIASISDIKFAK-DGRHILSRDYMTLKLWDINMDSGPV 373 (509)
Q Consensus 333 --------------------------------------~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~~~~~ 373 (509)
....+...+..++|+| ++++++++ ++.|.+||+.+ .+.+
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~ 288 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLI 288 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEE
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEE
Confidence 0001122467788999 99999988 79999999986 5555
Q ss_pred EEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 374 ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
..+..... . ..++|+|++++|++++.++.|++||+.+++.+. .+..+
T Consensus 289 ~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~-~~~~~ 335 (349)
T 1jmx_B 289 KAANLDHT-Y---------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK-NIKLP 335 (349)
T ss_dssp EEEECSSC-C---------------CEEEECSSSSCEEEESBSSEEEEEETTTTEEEE-EEECS
T ss_pred EEEcCCCC-c---------------cceEECCCCCEEEEecCCCeEEEEeccccceee-eeecC
Confidence 55543221 1 189999999999988889999999999998876 55433
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=4.5e-20 Score=189.65 Aligned_cols=291 Identities=11% Similarity=0.065 Sum_probs=179.4
Q ss_pred ceEEEEECCCCCeEEeecCC---------CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 42 IISAIEFDKTGDHLATGDRG---------GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~d---------g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.|.+++|||||++||+++.+ +.|++||+.+++. . .+....+|.
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~-------------------~l~~~~~~~------- 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--Q-------------------SLDPPEVSN------- 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--E-------------------ECCCTTCCS-------
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--E-------------------eccCCcccc-------
Confidence 49999999999999998764 7899999988764 0 011112333
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..+..++| +|||++|++++. +.|++||+.+++...........+ +.. |
T Consensus 114 -----~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~-------~~~-------------g---- 161 (723)
T 1xfd_A 114 -----AKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV-------IYN-------------G---- 161 (723)
T ss_dssp -----CCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------EEE-------------E----
T ss_pred -----ccccccEE--CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------eEC-------------c----
Confidence 45889999 999999999886 799999998876443311100000 000 0
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCC--------------------
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDL-------------------- 251 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg-------------------- 251 (509)
+.-|. +...-...+.+++|+|||+.|+++ .++
T Consensus 162 ------------~~~~v---------------~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 162 ------------LSDWL---------------YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp ------------ECCHH---------------HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred ------------cccee---------------EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 00000 000001234678889998888876 432
Q ss_pred --------------eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc----CCeEEEEECCCCc
Q 043890 252 --------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDLRQSA 313 (509)
Q Consensus 252 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~----dg~i~vwd~~~~~ 313 (509)
.|++||+.+++....+. .+.....+...+..++|+||| +++++... +..|++||+.+++
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMM--PPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCCCEECC--CCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eccCCCCCCCCCeeEEEEEECCCCceeEEee--CCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 78899988765322210 001122346789999999998 78776654 3579999999876
Q ss_pred ccCCceeeeccccCCCCccccccccccE----EEEEEecCCCEEEEe--c-CC------eEEEEECCCCCCc--eEEEee
Q 043890 314 LCDSHAILFEEQEAPGSRSFFTEIIASI----SDIKFAKDGRHILSR--D-YM------TLKLWDINMDSGP--VATFQV 378 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l~s~--~-~~------~i~iwd~~~~~~~--~~~~~~ 378 (509)
. ...+.... ...+ ..++|+|||+.|+.. . ++ .|++||+...+.. ...+..
T Consensus 292 ~----~~~~~~~~-----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 292 C----TKKHEDES-----------EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp E----EEEEEEEC-----------SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred c----eEEEEecc-----------CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 3 22222211 1122 367999999977653 2 35 5667773222221 333332
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeCC---CcEEEEeCCCCc--eeeeeecc---CCCceeEEEEcCCC
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS---NLFRVFGCAPGS--TEATTLEA---SKNPMRRQVQTPSR 450 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~--~~~~~~~~---~~~~v~~~~~s~~~ 450 (509)
+...+. ..++|+|||+.|+..+.+ +.++||+++... ... .+.. |...+..+.|+|++
T Consensus 357 ~~~~~~--------------~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 357 GDWDVT--------------KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ-CLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp SSSCEE--------------EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB-CSSTTSSSSCCCCEEEECTTS
T ss_pred CCeEEE--------------eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcc-eecccccCCCCeEEEEECCCC
Confidence 211111 036899999999866655 789999987432 333 4443 67778899999998
Q ss_pred CC
Q 043890 451 PS 452 (509)
Q Consensus 451 ~~ 452 (509)
+.
T Consensus 422 ~~ 423 (723)
T 1xfd_A 422 DF 423 (723)
T ss_dssp SE
T ss_pred CE
Confidence 75
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=7e-20 Score=169.81 Aligned_cols=249 Identities=10% Similarity=0.109 Sum_probs=171.6
Q ss_pred ceEEEEECCCCCeE-EeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeecc-CCcchhhccchhhhcc
Q 043890 42 IISAIEFDKTGDHL-ATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQS-HEPEFDYLKSLEIEEK 119 (509)
Q Consensus 42 ~I~~v~~s~~~~~l-a~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~ 119 (509)
.+..++|+|+|++| +++..++.|.+||+.+++. ...+.. +.. .+...
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~~--------~~~~~ 83 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-----------------------LGRIDLSTPE--------ERVKS 83 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECCBTT--------EEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-----------------------EeeEEcCCcc--------ccccc
Confidence 47889999999765 5566678999999987765 222221 100 00135
Q ss_pred ceeeEEEEcCCCceEEEee------------CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccC
Q 043890 120 INKIRWCQTANGALFLLST------------NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLAN 187 (509)
Q Consensus 120 v~~l~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (509)
+..++| +|++++|++++ .++.|.+||+.+++.....
T Consensus 84 ~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------------------------------ 131 (337)
T 1pby_B 84 LFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF------------------------------ 131 (337)
T ss_dssp TTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE------------------------------
T ss_pred ccceEE--CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE------------------------------
Confidence 788999 99999998886 5799999999866432210
Q ss_pred CCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeE
Q 043890 188 GGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 188 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~ 267 (509)
. ....+.+++|+|++++|+++ ++.|++||+++++....+
T Consensus 132 ---------------------------------------~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 132 ---------------------------------------E-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp ---------------------------------------E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE
T ss_pred ---------------------------------------e-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee
Confidence 1 12336678899999988887 678999999876543221
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCC-----------------------eEEEEECCCCcccCCceeeec
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDLRQSALCDSHAILFE 323 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~ 323 (509)
....+..+ +.|+|++ ..++..+ .++ .|.+||+.+++.. .+.
T Consensus 171 ------~~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~ 235 (337)
T 1pby_B 171 ------PIQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE 235 (337)
T ss_dssp ------CSTTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE
T ss_pred ------eccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee
Confidence 11111122 2678887 4443333 233 4689999887631 111
Q ss_pred cccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEE
Q 043890 324 EQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCL 403 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 403 (509)
. ..+...+.+++|+|+|++++++ ++.|++||+.+ .+.+..+..+.. . .+++|
T Consensus 236 ~----------~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~-~---------------~~~~~ 287 (337)
T 1pby_B 236 V----------RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS-Y---------------YSVNV 287 (337)
T ss_dssp E----------EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC-C---------------CEEEE
T ss_pred c----------CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc-e---------------eeEEE
Confidence 1 1122467889999999999988 69999999986 555555543321 1 18999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCC
Q 043890 404 SGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 404 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 438 (509)
+|+|++|++++.++.|++||+.+++.+. .+..+.
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~-~~~~~~ 321 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKG-QVDLPG 321 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEE-EEECGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEE-EEEcCC
Confidence 9999999999999999999999998887 665543
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=1.1e-19 Score=172.12 Aligned_cols=284 Identities=11% Similarity=0.131 Sum_probs=176.4
Q ss_pred EEECCCCCeEEeecC-CC--eEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcccee
Q 043890 46 IEFDKTGDHLATGDR-GG--RVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 122 (509)
Q Consensus 46 v~~s~~~~~la~g~~-dg--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 122 (509)
.+|+|||++||.++. +| .|.+||+.+++. .....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence 889999999998887 66 488888887765 33333443 34557
Q ss_pred eEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCC
Q 043890 123 IRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGI 202 (509)
Q Consensus 123 l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 202 (509)
+.| +|||+.|+.++.++.|.+||+.+++...+.
T Consensus 86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~--------------------------------------------- 118 (388)
T 3pe7_A 86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVY--------------------------------------------- 118 (388)
T ss_dssp CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE---------------------------------------------
T ss_pred eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeee---------------------------------------------
Confidence 789 999999999999999999999887533221
Q ss_pred CccccccccccccceeeeeeeeeecccccCeEEE--EECCCCCEEEEE-----------------------cCCeEEEEE
Q 043890 203 PSLRLPTVTSNETSLVARCRRVYAHAHDYHINSI--SNNSDGETFISA-----------------------DDLRINLWN 257 (509)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~-----------------------~dg~i~iwd 257 (509)
..+...+... .+++++.+++.. .+..|++||
T Consensus 119 ------------------------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 119 ------------------------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp ------------------------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred ------------------------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 1112222222 347888877632 236799999
Q ss_pred ccCCCceeeEeeccCCccCCCccceEEEEEeC-CCCcEEEEEEcC------CeEEEEECCCCcccCCceeeeccccCCCC
Q 043890 258 LEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDLRQSALCDSHAILFEEQEAPGS 330 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
+.+++.. .+..+...+..++|+| ++ +.|+....+ ..|.++|+..+.. +.+....
T Consensus 175 ~~~g~~~---------~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~---- 235 (388)
T 3pe7_A 175 LKTGEST---------VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA---- 235 (388)
T ss_dssp TTTCCEE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC----
T ss_pred CCCCceE---------EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC----
Confidence 9876532 2334556789999999 98 778777653 3688888776542 2222111
Q ss_pred ccccccccccEEEEEEecCCCEEEEec--C--C--eEEEEECCCCCCceE--EEeecccccccccccccCCCccceeeEE
Q 043890 331 RSFFTEIIASISDIKFAKDGRHILSRD--Y--M--TLKLWDINMDSGPVA--TFQVHEYLRPKLCDLYENDSIFDKFECC 402 (509)
Q Consensus 331 ~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~--~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 402 (509)
....+..++|+|||+.|+..+ + . .|++||+.+ ++... .+..+..... .. ....
T Consensus 236 ------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~---------~~---~~~~ 296 (388)
T 3pe7_A 236 ------EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS---------NY---DGSL 296 (388)
T ss_dssp ------TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE---------CT---TSSE
T ss_pred ------CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee---------cC---CCCe
Confidence 002477889999999776532 2 2 399999986 33222 2221100000 00 0457
Q ss_pred EcCCCCEEEEe---------eCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccC
Q 043890 403 LSGDGLRVATG---------SYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDT 473 (509)
Q Consensus 403 ~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (509)
|+|||+.|+.. ..+..|++||+.+++.. .+..+..... .+
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~l~~~~~~~~-----------------------------~~ 345 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH--RVARHDTSWK-----------------------------VF 345 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEEE--EEEECCCCCC-----------------------------CB
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCceE--EeccccCccc-----------------------------cc
Confidence 99999988854 45678999999987653 3333321000 00
Q ss_pred CCcccccccceEEEEEcCCCcEEEEEec--CceEEE
Q 043890 474 NGNSFDFTTKLLHLAWHPTENSIACAAA--NSLYMY 507 (509)
Q Consensus 474 ~~~~~~~~~~i~~~~~~p~~~~la~~~~--~~i~v~ 507 (509)
.+. -...+..++|+||++.|+..+. +...||
T Consensus 346 ~~~---~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 346 EGD---RQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp TTB---SSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccc---cccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 000 0123677899999999988775 444444
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=5.8e-19 Score=168.57 Aligned_cols=229 Identities=10% Similarity=0.103 Sum_probs=145.8
Q ss_pred ecccceEEEEECCCCCeEE----eecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 38 QEVDIISAIEFDKTGDHLA----TGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~~la----~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
.|...|.+++|+|+|++|| +|+.|+.|+|||+.+........ .........+.+|.
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~------------~~~~~~~~~~~~h~-------- 149 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ------------KRPFAYHKLLKDAG-------- 149 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS------------CCCSEEEECCCSGG--------
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCC------------cceeeeeeccCCCC--------
Confidence 4567899999999999999 89999999999997641100000 00001134556676
Q ss_pred hhhhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 114 LEIEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..|.+++| +|+ +.+|++++.||+|++||++++....
T Consensus 150 ----~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~------------------------------------- 186 (434)
T 2oit_A 150 ----GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVC------------------------------------- 186 (434)
T ss_dssp ----GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEE-------------------------------------
T ss_pred ----CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCccee-------------------------------------
Confidence 78999999 887 7899999999999999998763110
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
. ..+|...|.+++|+|+|++|++| .||.|++||++ ++....+ ...
T Consensus 187 -------------------------------~-~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~-~~~ 232 (434)
T 2oit_A 187 -------------------------------A-TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI-PCP 232 (434)
T ss_dssp -------------------------------E-EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE-CCC
T ss_pred -------------------------------e-ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc-cCC
Confidence 0 24577889999999999999999 99999999998 3322221 111
Q ss_pred CCccCCCccceEEEEEeCCCCcEEEE-EEcCC------eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 272 PANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l~~-~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
......|...|.+++|++++ .++++ +..+| .+++||++..+... ...+........ .......+-..+
T Consensus 233 ~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~~--~~~~~r~~~~~~ 307 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPCY--GSCTERQHHYYL 307 (434)
T ss_dssp TTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSSC--CCCSSSCCCEEE
T ss_pred cccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCCC--CCCCCcCcceee
Confidence 00111345689999999987 55544 33443 38999998753210 011111111000 000111222234
Q ss_pred EEecCCCEEEEec-C-CeEEEEECCC
Q 043890 345 KFAKDGRHILSRD-Y-MTLKLWDINM 368 (509)
Q Consensus 345 ~~s~~~~~l~s~~-~-~~i~iwd~~~ 368 (509)
.+-++.+++++++ . ..|.|.....
T Consensus 308 ~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 308 SYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp EEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred ehhccCCEEEEecCCCCceeEEEecC
Confidence 4557778777754 2 6677776543
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=6.6e-18 Score=158.17 Aligned_cols=289 Identities=11% Similarity=0.065 Sum_probs=173.4
Q ss_pred cccceEEEEECCCCCeEEeecCC----CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 39 EVDIISAIEFDKTGDHLATGDRG----GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~d----g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
|......++|+|+|++|++++.+ +.|.+|+++.... ....+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 56777889999999999998875 7999999876421 000112222222
Q ss_pred hhhccceeeEEEEcCCCceEEEee-CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 115 EIEEKINKIRWCQTANGALFLLST-NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
.....+++ ++++|++++ .++.|.+|++............ ....
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-----------------------~~~~------ 143 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDV-----------------------IEFK------ 143 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE-----------------------EECC------
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCccccee-----------------------EEcc------
Confidence 23455554 787777776 5789999999754211110000 0000
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCc------ee
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ------SF 265 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~------~~ 265 (509)
+.+.. ....+...+.+++|+|+|++++++ .++.|.+|++..... +.
T Consensus 144 -----g~~~~---------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 144 -----GSGPD---------------------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp -----CCCSC---------------------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred -----CCCCC---------------------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 00000 001223447889999999976655 689999999986442 11
Q ss_pred eEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 266 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
..-... .........+..++|+|++ +++++++ .++.|.+||+.++.+. .+..+.. ...+......+
T Consensus 198 ~~~~~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~--~~~~~~~---------~~~~~~~~~~i 264 (361)
T 3scy_A 198 TKGTPE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLD--EIQTVAA---------DTVNAQGSGDI 264 (361)
T ss_dssp EEEEEE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEE--EEEEEES---------CSSCCCCEEEE
T ss_pred eccccc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceE--EeEEEec---------CCCCCCCcccE
Confidence 000000 0112234567899999999 7776666 6899999999866421 0111111 11112356899
Q ss_pred EEecCCCEEEEe--c-CCeEEEEECCCCCCce---EEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCC
Q 043890 345 KFAKDGRHILSR--D-YMTLKLWDINMDSGPV---ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSN 417 (509)
Q Consensus 345 ~~s~~~~~l~s~--~-~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg 417 (509)
+|+|||++|+++ . ++.|.+|++......+ ..+.. .... ..++|+|||++|++++ .++
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEEEECTTSCEEEEEETTTT
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceEEECCCCCEEEEEECCCC
Confidence 999999988664 2 4799999996322222 22222 1111 1899999999998887 678
Q ss_pred cEEEEeC--CCCceeeeee-ccCCCceeEEEEc
Q 043890 418 LFRVFGC--APGSTEATTL-EASKNPMRRQVQT 447 (509)
Q Consensus 418 ~i~iw~~--~~~~~~~~~~-~~~~~~v~~~~~s 447 (509)
.|.+|++ .+++... .. ..+.....++.|.
T Consensus 329 ~v~v~~~d~~~g~~~~-~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 329 VIQIFERDQATGLLTD-IKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEEECTTTCCEEE-CSCCEECSSEEEEEEE
T ss_pred CEEEEEEECCCCcEee-cceeeeCCCCeEEEEc
Confidence 9999654 5676554 22 2234455666654
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=4e-18 Score=159.64 Aligned_cols=212 Identities=10% Similarity=0.092 Sum_probs=132.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCC----CeEEEEeccch--hhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 118 EKINKIRWCQTANGALFLLSTND----KTIKFWKVQEK--KVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~d----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
..+..++| +|++++|++++.+ +.|.+|++... +....
T Consensus 50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~----------------------------------- 92 (361)
T 3scy_A 50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL----------------------------------- 92 (361)
T ss_dssp SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe-----------------------------------
Confidence 55788999 9999999999886 79999998752 21111
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEee
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~ 269 (509)
.. ...+......+++ ++++|+++ .++.|.+|++........+..
T Consensus 93 -------------------------------~~-~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 138 (361)
T 3scy_A 93 -------------------------------NT-QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD 138 (361)
T ss_dssp -------------------------------EE-EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE
T ss_pred -------------------------------eE-eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce
Confidence 00 1223344666777 77777766 689999999976443221100
Q ss_pred ---c---cCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCCCcc----c-CCce---eeeccccCCCCcccc
Q 043890 270 ---V---KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQSAL----C-DSHA---ILFEEQEAPGSRSFF 334 (509)
Q Consensus 270 ---~---~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~----~-~~~~---~~~~~~~~~~~~~~~ 334 (509)
. .+.....+...+.+++|+|++ +++++++ .++.|.+|++..... . .... ......
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--------- 208 (361)
T 3scy_A 139 VIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA--------- 208 (361)
T ss_dssp EEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC---------
T ss_pred eEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC---------
Confidence 0 000112233456889999999 6555544 589999999876431 0 0000 011111
Q ss_pred ccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCc--eEEEeecccccccccccccCCCccceeeEEEcCCCCEE
Q 043890 335 TEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV 410 (509)
Q Consensus 335 ~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 410 (509)
+...+..++|+|||++++++. ++.|.+||+.+ +.. +..+...... ......++|+|||++|
T Consensus 209 --~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~------------~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 209 --PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVN------------AQGSGDIHLSPDGKYL 273 (361)
T ss_dssp --TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSC------------CCCEEEEEECTTSSEE
T ss_pred --CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCC------------CCCcccEEECCCCCEE
Confidence 124578899999999887764 49999999984 322 1222211110 0011279999999998
Q ss_pred EEeeCC--CcEEEEeCC
Q 043890 411 ATGSYS--NLFRVFGCA 425 (509)
Q Consensus 411 ~~~~~d--g~i~iw~~~ 425 (509)
+++..+ +.|.+|+++
T Consensus 274 ~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 274 YASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEECSSSCEEEEEEEC
T ss_pred EEECCCCCCEEEEEEEc
Confidence 776654 899999986
No 159
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=2.3e-18 Score=160.71 Aligned_cols=229 Identities=10% Similarity=0.054 Sum_probs=153.3
Q ss_pred ccceeeEEEEcCCCceEEEeeC-------CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 118 EKINKIRWCQTANGALFLLSTN-------DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
..+..++| +|+++++++++. ++.|.+||..+++.....
T Consensus 41 ~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------------------- 85 (353)
T 3vgz_A 41 KGAYEMAY--SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI--------------------------------- 85 (353)
T ss_dssp SSEEEEEE--ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE---------------------------------
T ss_pred cCccceEE--CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE---------------------------------
Confidence 45788999 999998888774 568999999876533221
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEe
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~ 268 (509)
.....+..++|+|++++++++ .++.|.+||.++++....+.
T Consensus 86 -------------------------------------~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 128 (353)
T 3vgz_A 86 -------------------------------------HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLV 128 (353)
T ss_dssp -------------------------------------EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred -------------------------------------ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEe
Confidence 112235678999999966554 68999999999876543321
Q ss_pred eccCC-cc-CCCccceEEEEEeCCCCcEEEEEE--cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEE
Q 043890 269 DVKPA-NM-EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDI 344 (509)
Q Consensus 269 ~~~~~-~~-~~~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (509)
.... .. ......+.+++|+|++ +.+++++ .++.|.+||+.+++. ...+.... ..+..+
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~------------~~~~~~ 190 (353)
T 3vgz_A 129 -LDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKL----KTAIQNTG------------KMSTGL 190 (353)
T ss_dssp -SCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEE----EEEECCCC------------TTCCCC
T ss_pred -cCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCce----EEEecCCC------------CccceE
Confidence 1000 00 0011237889999998 6666655 478999999998764 33333111 346788
Q ss_pred EEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCcEEEE
Q 043890 345 KFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNLFRVF 422 (509)
Q Consensus 345 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw 422 (509)
+|+|+|+++++++ ++.|.+||+.+ .+....+........ ..+..++|+|++++|++++. ++.|.+|
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKE-----------HFFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSC-----------CCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCC-----------cccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 9999999888875 59999999986 565555544211000 00126899999998777665 5999999
Q ss_pred eCCCCceeeeeeccCCCceeEEEEcCCCC
Q 043890 423 GCAPGSTEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
|+.+++.+. .+..+. ...++++|++.
T Consensus 259 d~~~~~~~~-~~~~~~--~~~~~~s~dg~ 284 (353)
T 3vgz_A 259 DTRNGNILA-KVAAPE--SLAVLFNPARN 284 (353)
T ss_dssp ETTTCCEEE-EEECSS--CCCEEEETTTT
T ss_pred ECCCCcEEE-EEEcCC--CceEEECCCCC
Confidence 999998876 555432 13455666554
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2e-18 Score=160.81 Aligned_cols=162 Identities=10% Similarity=0.101 Sum_probs=110.4
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
++++ ++++.++++++.++.|.+||+.+++......
T Consensus 4 g~~~--~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~------------------------------------------- 38 (349)
T 1jmx_B 4 GPAL--KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV------------------------------------------- 38 (349)
T ss_dssp CCCC--CTTCEEEEEEETTTEEEEEETTTTEEEEEEE-------------------------------------------
T ss_pred cccc--cCCCEEEEEeCCCCeEEEEECCCCcEEEEEe-------------------------------------------
Confidence 3455 7888899999999999999998775432211
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeEeeccCCccCCC-
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDL- 278 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~- 278 (509)
.+....+..++|+|+++.++ +. .++.|.+||+.+++....+ .....
T Consensus 39 -------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~ 87 (349)
T 1jmx_B 39 -------------------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVP 87 (349)
T ss_dssp -------------------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCST
T ss_pred -------------------------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------Eccccc
Confidence 11112366889999998665 44 6899999999876644322 11110
Q ss_pred ---ccceEEEEEeCCCCcEEEEEEcC------------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE
Q 043890 279 ---TEVITSAEFHPTHCNMLAYSSSK------------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 279 ---~~~i~~l~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
...+..++|+|++ ++|++++.+ +.|.+||+.+++.. +.+..+..+ ..+.+
T Consensus 88 ~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~-------------~~~~~ 152 (349)
T 1jmx_B 88 GEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFPMP-------------RQVYL 152 (349)
T ss_dssp TEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-CCSEEEECC-------------SSCCC
T ss_pred ccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccc-ceeeeccCC-------------Ccccc
Confidence 2346789999998 888888765 89999999876531 112222221 35788
Q ss_pred EEEecCCCEEEEecCCeEEEEECCCCCCceEEEe
Q 043890 344 IKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 344 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~ 377 (509)
++|+|+|+ +++++ +.|++||+.+ .+....+.
T Consensus 153 ~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~~~~~ 183 (349)
T 1jmx_B 153 MRAADDGS-LYVAG-PDIYKMDVKT-GKYTVALP 183 (349)
T ss_dssp EEECTTSC-EEEES-SSEEEECTTT-CCEEEEEC
T ss_pred eeECCCCc-EEEcc-CcEEEEeCCC-Cceecccc
Confidence 99999999 55443 4599999986 55555554
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=4.3e-18 Score=159.49 Aligned_cols=259 Identities=12% Similarity=0.027 Sum_probs=164.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcc-CCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhcc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERT-DTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 119 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 119 (509)
..+..++|+|+|++|++++.+ .|.+|++. +++. ..... +.. .+.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----------------------~~~~~-~~~----------~g~ 84 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----------------------VHEAS-HPI----------GGH 84 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----------------------EEEEE-EEC----------CSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----------------------EEeeE-eec----------CCC
Confidence 467889999999999998887 99999997 5543 11111 100 022
Q ss_pred ceeeEEEEcCCCce--EEEee-------------CCCeEEEEeccc-hhhhhhhccCCCCCcccCCCCcccCCCCccCCc
Q 043890 120 INKIRWCQTANGAL--FLLST-------------NDKTIKFWKVQE-KKVKKIADMNVDPSKAVGNGNVASSSNNVSPKP 183 (509)
Q Consensus 120 v~~l~~~~~~~~~~--l~s~~-------------~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (509)
+..++| +|+|++ ++++. .++.+.+|++.. ++....
T Consensus 85 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~--------------------------- 135 (365)
T 1jof_A 85 PRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN--------------------------- 135 (365)
T ss_dssp GGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE---------------------------
T ss_pred CccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce---------------------------
Confidence 556888 999984 44553 688999999863 321110
Q ss_pred cccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEcc-C
Q 043890 184 YLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLE-I 260 (509)
Q Consensus 184 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~-~ 260 (509)
...+...+...+.+++|+|+|++|+++ .++.|++|+++ +
T Consensus 136 --------------------------------------~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 136 --------------------------------------VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp --------------------------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred --------------------------------------EeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence 000001234568899999999988876 47899999998 5
Q ss_pred CCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CCeEEEEECC--CCcccCCceeeeccccCCCCccccccc
Q 043890 261 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLR--QSALCDSHAILFEEQEAPGSRSFFTEI 337 (509)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (509)
++.. .+.. .....+...+..++|+|++ +++++++. ++.|.+|++. ++++... ...+... +. .+.+|
T Consensus 178 g~~~-~~~~---~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~~--~~---~~~g~ 246 (365)
T 1jof_A 178 GEVE-LVGS---VDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPLI--PP---GIPDR 246 (365)
T ss_dssp SCEE-EEEE---EECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEESS--CT---TCCCB
T ss_pred CCEE-Eeee---EecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEcC--CC---CcCCc
Confidence 5421 1100 0111245678999999998 77777765 7899999876 3432100 0111100 00 01112
Q ss_pred cc------cEEEEE-EecCCCEEEEec--CC-----eEEEEECCCCCCceEE---EeecccccccccccccCCCccceee
Q 043890 338 IA------SISDIK-FAKDGRHILSRD--YM-----TLKLWDINMDSGPVAT---FQVHEYLRPKLCDLYENDSIFDKFE 400 (509)
Q Consensus 338 ~~------~i~~~~-~s~~~~~l~s~~--~~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~ 400 (509)
.. .+..++ |+|||++|+++. .+ .|.+|++...++.... ...+..... .
T Consensus 247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~---------------~ 311 (365)
T 1jof_A 247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH---------------S 311 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT---------------C
T ss_pred ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc---------------c
Confidence 22 578999 999999888753 23 8999999632343321 211221111 7
Q ss_pred EEEcC---CCCEEEEeeCC-CcEEEEeCCCC
Q 043890 401 CCLSG---DGLRVATGSYS-NLFRVFGCAPG 427 (509)
Q Consensus 401 ~~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 427 (509)
++|+| ||++|++++.+ +.|.+|+++..
T Consensus 312 ~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 88999 89999998864 89999999865
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.4e-18 Score=173.60 Aligned_cols=209 Identities=11% Similarity=0.060 Sum_probs=141.7
Q ss_pred ccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 118 EKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
.+|.+++| +|||++|++++. ||+++||++.+++..+.
T Consensus 22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------------------- 59 (582)
T 3o4h_A 22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKL---------------------------------------- 59 (582)
T ss_dssp SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence 56999999 999999999887 99999999865542221
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c---CCeEEEEEccC--CCceeeEeec
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEI--SNQSFNIVDV 270 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---dg~i~iwd~~~--~~~~~~~~~~ 270 (509)
...+...+..++|+|+ ++++++ . +....+|.++. ......
T Consensus 60 -----------------------------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~---- 105 (582)
T 3o4h_A 60 -----------------------------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR---- 105 (582)
T ss_dssp -----------------------------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE----
T ss_pred -----------------------------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc----
Confidence 1222256888999999 677766 4 45566766554 222111
Q ss_pred cCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 271 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 271 ~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
+.. ...+...+|+|++...+++++.++.+.+||+.+++. ..+.... . .+++|+|||
T Consensus 106 ----l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-----~~l~~~~------------~--~~~~~spDG 161 (582)
T 3o4h_A 106 ----LEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-----RELARLP------------G--FGFVSDIRG 161 (582)
T ss_dssp ----CTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-----EEEEEES------------S--CEEEEEEET
T ss_pred ----ccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-----EEeecCC------------C--ceEEECCCC
Confidence 111 122345688888744555555555566999988763 2222221 2 789999999
Q ss_pred CEEEEec-C----CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC--cEEEEe
Q 043890 351 RHILSRD-Y----MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN--LFRVFG 423 (509)
Q Consensus 351 ~~l~s~~-~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~ 423 (509)
++|++++ + ..|++||+.+ ++ ...+..+...+. .++|||||++|+++..++ .|++||
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~~~~~~~---------------~~~~SpDG~~l~~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDSGEGSFS---------------SASISPGMKVTAGLETAREARLVTVD 224 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTT-CC-CEEECCSSCEEE---------------EEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred CEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeecCCCccc---------------cceECCCCCEEEEccCCCeeEEEEEc
Confidence 9999653 3 6799999986 33 345665554432 899999999999888888 899999
Q ss_pred CCCCceeeeeeccCCCceeEEE
Q 043890 424 CAPGSTEATTLEASKNPMRRQV 445 (509)
Q Consensus 424 ~~~~~~~~~~~~~~~~~v~~~~ 445 (509)
+.+++.. .+..|...+..+.
T Consensus 225 ~~~~~~~--~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 225 PRDGSVE--DLELPSKDFSSYR 244 (582)
T ss_dssp TTTCCEE--ECCCSCSHHHHHC
T ss_pred CCCCcEE--EccCCCcChhhhh
Confidence 9988765 5566655444443
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=8.9e-16 Score=138.58 Aligned_cols=269 Identities=10% Similarity=0.155 Sum_probs=176.8
Q ss_pred ceeEEeeccccccccCcceecccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEE
Q 043890 19 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYK 98 (509)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (509)
...|.+...|+.+.. ..+|...+.+++++++++++++...++.|.+||... +. .
T Consensus 10 ~~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~-----------------------~ 63 (286)
T 1q7f_A 10 RQRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-----------------------K 63 (286)
T ss_dssp CEEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-----------------------E
T ss_pred cceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cE-----------------------E
Confidence 355667777765433 345778899999999999999888899999999763 22 1
Q ss_pred eeeccCCcchhhccchhhhccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 99 TEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 99 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
..+..... ...+...+..+++. .++++++++... ++.|.+||. +++....
T Consensus 64 ~~~~~~~~------~~~~~~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~--------------------- 114 (286)
T 1q7f_A 64 FQFGECGK------RDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRK--------------------- 114 (286)
T ss_dssp EEECCBSS------STTCBSSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEE---------------------
T ss_pred EEecccCC------CcccccCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEE---------------------
Confidence 22211000 00000347788872 256655555533 789999994 3332111
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEE
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLW 256 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iw 256 (509)
+...+...+.+++++++|+++++. .++.|.+|
T Consensus 115 -----------------------------------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 115 -----------------------------------------------FGATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp -----------------------------------------------ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred -----------------------------------------------ecCccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 001223457889999999988887 78999999
Q ss_pred EccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 257 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
|... +....+ ....+...+.++++++++ +++++...++.|++||..... +..+....
T Consensus 148 ~~~g-~~~~~~------~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~-----~~~~~~~g---------- 204 (286)
T 1q7f_A 148 DQNG-NVLHKF------GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-----LRQIGGEG---------- 204 (286)
T ss_dssp CTTS-CEEEEE------ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-----EEEESCTT----------
T ss_pred cCCC-CEEEEe------CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE-----EEEEccCC----------
Confidence 9653 322211 111344568999999998 777777789999999985432 23332211
Q ss_pred ccccEEEEEEecCCCEEEEec-CC-eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 337 IIASISDIKFAKDGRHILSRD-YM-TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~~l~s~~-~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
+...+..++++++|+++++.. ++ .|.+||.. ++.+..+..+..... ...++++|+|+++++ +
T Consensus 205 ~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~-------------~~~i~~~~~g~l~vs-~ 268 (286)
T 1q7f_A 205 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-------------CFDVALMDDGSVVLA-S 268 (286)
T ss_dssp TSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-------------EEEEEEETTTEEEEE-E
T ss_pred ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCc-------------ceeEEECCCCcEEEE-C
Confidence 114678999999999888875 44 99999965 456666655432110 127899999987776 6
Q ss_pred CCCcEEEEeCCCCc
Q 043890 415 YSNLFRVFGCAPGS 428 (509)
Q Consensus 415 ~dg~i~iw~~~~~~ 428 (509)
.|+.|++|+.....
T Consensus 269 ~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 269 KDYRLYIYRYVQLA 282 (286)
T ss_dssp TTTEEEEEECSCCC
T ss_pred CCCeEEEEEccccc
Confidence 79999999987543
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=7.5e-18 Score=172.89 Aligned_cols=279 Identities=7% Similarity=-0.006 Sum_probs=173.8
Q ss_pred ceEEEEECCCCCeEEeecC---------CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhcc
Q 043890 42 IISAIEFDKTGDHLATGDR---------GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLK 112 (509)
Q Consensus 42 ~I~~v~~s~~~~~la~g~~---------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 112 (509)
.|.+++|||||++||+++. ++.|++||+.+++.... ..+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------~~l---~------- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------NEL---P------- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCC---C-------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------eec---C-------
Confidence 3899999999999999876 68999999987653000 011 0
Q ss_pred chhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 113 SLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 113 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..+..++| +|||+.|+++. ++.|++|++.+++...+....
T Consensus 110 -----~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~-------------------------------- 149 (719)
T 1z68_A 110 -----RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG-------------------------------- 149 (719)
T ss_dssp -----SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC--------------------------------
T ss_pred -----cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC--------------------------------
Confidence 34888999 99999999886 789999999877643321000
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccc---------cCeEEEEECCCCCEEEEE-cC-C----------
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHD---------YHINSISNNSDGETFISA-DD-L---------- 251 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~l~~~-~d-g---------- 251 (509)
... .+ +.++. ....+++|+|||+.|+++ .| +
T Consensus 150 --------~~~--~v------------------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 150 --------REN--KI------------------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp --------BTT--TE------------------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC
T ss_pred --------CcC--Ce------------------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 000 00 01221 123578999999999887 43 2
Q ss_pred -----------------------eEEEEEccCCCce--eeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC----C
Q 043890 252 -----------------------RINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----G 302 (509)
Q Consensus 252 -----------------------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d----g 302 (509)
.|++||+.+++.. ..+. .+..+..|...+..++|+||+ +++++.... .
T Consensus 202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVS 278 (719)
T ss_dssp CSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEE
T ss_pred CCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeE
Confidence 7889998875431 1110 112344688889999999997 777775433 2
Q ss_pred eEEEEE----CCCCcccCCceeeeccccCCCCccccccccccEE-----EEEEecCCCEEEE--ec-C--CeEEEEECCC
Q 043890 303 SIRLID----LRQSALCDSHAILFEEQEAPGSRSFFTEIIASIS-----DIKFAKDGRHILS--RD-Y--MTLKLWDINM 368 (509)
Q Consensus 303 ~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~s--~~-~--~~i~iwd~~~ 368 (509)
.|.+|| +.+++.. ..+... ...|...+. .+.|+|||+.++. +. + ..|.+||+..
T Consensus 279 ~l~~~d~~~~~~~g~~~----~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 279 VLSICDFREDWQTWDCP----KTQEHI--------EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp EEEEEEECSSSSSEECC----GGGEEE--------EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred EEEEEcccCCCCCCceE----EEEecc--------cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 488899 7666531 111100 011223444 7889999996554 32 3 4677778764
Q ss_pred CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCC--Cce-eeeee----cc
Q 043890 369 DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAP--GST-EATTL----EA 436 (509)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~--~~~-~~~~~----~~ 436 (509)
++ ...+..+...+ ..+.++ +++.|+..+.+ +.+++|.+.. +.. .. .+ .+
T Consensus 347 -~~-~~~lt~~~~~v---------------~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~l~~~~~~ 407 (719)
T 1z68_A 347 -EN-AIQITSGKWEA---------------INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK-CVTCHLRK 407 (719)
T ss_dssp -TT-CEECSCSSSCE---------------EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE-ESSTTTTT
T ss_pred -Cc-eEecccCceEE---------------EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce-eccCccCC
Confidence 33 44444332222 155666 77777766654 7888998763 421 22 33 23
Q ss_pred CCCceeEEEEcCCCCCC
Q 043890 437 SKNPMRRQVQTPSRPSR 453 (509)
Q Consensus 437 ~~~~v~~~~~s~~~~~~ 453 (509)
|...+..+.|+|++...
T Consensus 408 ~~~~~~~~~~s~dg~~l 424 (719)
T 1z68_A 408 ERCQYYTASFSDYAKYY 424 (719)
T ss_dssp TTBCBEEEEECGGGSSE
T ss_pred CCCceEEEEECCCCCEE
Confidence 66677888999987653
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.2e-16 Score=149.67 Aligned_cols=220 Identities=12% Similarity=0.045 Sum_probs=133.0
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEecc-chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQ-EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..+..++| +|++++|++++.+ .|.+|++. +++......
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------------------- 78 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------------------- 78 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence 35788999 9999999999888 99999997 554221100
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCE--EEEE--------------cCCeEEEEEccC
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGET--FISA--------------DDLRINLWNLEI 260 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--l~~~--------------~dg~i~iwd~~~ 260 (509)
...+ +....++|+|+|++ ++++ .+|.+.+|++..
T Consensus 79 -----------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~ 128 (365)
T 1jof_A 79 -----------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128 (365)
T ss_dssp -----------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT
T ss_pred -----------------------------eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC
Confidence 0000 11334678888884 3333 378899999974
Q ss_pred CCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CCeEEEEECC-CCcccCCceeeeccccCCCCcccccccc
Q 043890 261 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLR-QSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
.......+.. ....+...+.+++|+|+| ++++++.. ++.|++||+. ++++. .+..+... .|.
T Consensus 129 ~g~~~~~~~~---~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~--~~~~~~~~----------~~g 192 (365)
T 1jof_A 129 TGKLEKNVQN---YEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVE--LVGSVDAP----------DPG 192 (365)
T ss_dssp TCCEEEEEEE---EECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEE--EEEEEECS----------STT
T ss_pred CCcCcceEee---EEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEE--EeeeEecC----------CCC
Confidence 3322211100 001245678999999999 77777664 6899999998 56531 01112100 012
Q ss_pred ccEEEEEEecCCCEEEEec--CCeEEEEECCCC-CCce---EEEeecccccccccccccCC---CccceeeEE-EcCCCC
Q 043890 339 ASISDIKFAKDGRHILSRD--YMTLKLWDINMD-SGPV---ATFQVHEYLRPKLCDLYEND---SIFDKFECC-LSGDGL 408 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~-~s~~~~ 408 (509)
..+..++|+|||++|+++. ++.|.+|++... ++.. ..+........ .++. ....+..++ |+|||+
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~i~~~spdG~ 267 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP-----DRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC-----CBCTTTSSBSEEEEEEEECTTSS
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC-----CcccccccccccccEEEECCCCC
Confidence 4688999999999988764 489999987631 2321 11211100000 0000 000123789 999999
Q ss_pred EEEEeeCCC------cEEEEeCC-CCce
Q 043890 409 RVATGSYSN------LFRVFGCA-PGST 429 (509)
Q Consensus 409 ~l~~~~~dg------~i~iw~~~-~~~~ 429 (509)
+|++++.+. .|.+|+++ +++.
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence 988776432 89999996 5553
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=1.7e-16 Score=161.16 Aligned_cols=274 Identities=9% Similarity=0.009 Sum_probs=171.7
Q ss_pred eecccceEEEEECCCCCeEEee--cCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 37 VQEVDIISAIEFDKTGDHLATG--DRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 37 ~~h~~~I~~v~~s~~~~~la~g--~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+|...|..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~l~~~~--------- 67 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----------------------EESALPAP--------- 67 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----------------------EEESSCTT---------
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----------------------cceeCCCC---------
Confidence 4588999999999988777777 6688999999743332 23344443
Q ss_pred hhhccce---------eeEEEEcCCCce-EEEeeC-CCeEEEEecc--c-hhhhhhhccCCCCCcccCCCCcccCCCCcc
Q 043890 115 EIEEKIN---------KIRWCQTANGAL-FLLSTN-DKTIKFWKVQ--E-KKVKKIADMNVDPSKAVGNGNVASSSNNVS 180 (509)
Q Consensus 115 ~~~~~v~---------~l~~~~~~~~~~-l~s~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (509)
..+. ...|..||||++ |+.++. +..|.+|++. + +....+...
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~--------------------- 123 (662)
T 3azo_A 68 ---WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV--------------------- 123 (662)
T ss_dssp ---CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC---------------------
T ss_pred ---ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC---------------------
Confidence 2233 455632499998 776654 4566666654 2 321111000
Q ss_pred CCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC---------
Q 043890 181 PKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD--------- 250 (509)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d--------- 250 (509)
....|...+..++|+|||+.|+++ .+
T Consensus 124 --------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 124 --------------------------------------------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp --------------------------------------------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred --------------------------------------------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 001145567889999999999887 55
Q ss_pred -CeEEEEEccC------CCceeeEeeccCCccC-CCccceEEEEEeCCCCcEEEEEEcC--------CeEEEEECC-CCc
Q 043890 251 -LRINLWNLEI------SNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSK--------GSIRLIDLR-QSA 313 (509)
Q Consensus 251 -g~i~iwd~~~------~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~~~~d--------g~i~vwd~~-~~~ 313 (509)
..|++||+.+ ++. . .+. .+...+..++|+||| +.|+.++.+ ..|.+||+. ++.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~-~--------~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV-R--------ELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS-E--------ESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred eeEEEEEECCCCccccCCce-e--------EEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999987 332 1 233 455678889999999 888877754 379999998 452
Q ss_pred ccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-C--eEEEEECCCCCCceEEEeecccccccccccc
Q 043890 314 LCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEYLRPKLCDLY 390 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (509)
.. ....+.. +|...+..+.|+|||+++++++. + .|.+||+.+ ++. ..+..+...... .
T Consensus 230 ~~--~~~~l~~-----------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~-~~l~~~~~~~~~---p- 290 (662)
T 3azo_A 230 FA--DTRTLLG-----------GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAA-TQLCRREEEFAG---P- 290 (662)
T ss_dssp EE--EEEEEEE-----------ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCE-EESSCCSSBSSC---C-
T ss_pred cc--ccEEeCC-----------CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cce-eecccccccccC---c-
Confidence 10 0122211 12357899999999997776653 5 677777654 333 333222211100 0
Q ss_pred cCCCccceeeEEEcCCCCEEEEeeCCCcEEEE--eCCCCceeeeeeccCCCceeEE
Q 043890 391 ENDSIFDKFECCLSGDGLRVATGSYSNLFRVF--GCAPGSTEATTLEASKNPMRRQ 444 (509)
Q Consensus 391 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw--~~~~~~~~~~~~~~~~~~v~~~ 444 (509)
.-...+..++|+|+++++++++. +.++|| |+.+++ +. .+..|...+..+
T Consensus 291 --~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~-~l~~~~~~~~~~ 341 (662)
T 3azo_A 291 --LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LV-DAAGPWTEWAAT 341 (662)
T ss_dssp --CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EE-ECCSSCCEEEEE
T ss_pred --cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EE-EecCCCCeEEEE
Confidence 00001227899999999999998 999999 555555 44 677776666555
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=5.7e-16 Score=143.22 Aligned_cols=249 Identities=13% Similarity=0.113 Sum_probs=163.4
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
..|.++.|++++..++....++.++.|. .+. ...+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------------------~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEP-----------------------WLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEE-----------------------EEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cce-----------------------eEEEeccC------------ccc
Confidence 4577889999988888778888899992 222 23344443 457
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
.+++| ++++++++++..++.|.+||..+++....
T Consensus 48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-------------------------------------------- 81 (333)
T 2dg1_A 48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRP-------------------------------------------- 81 (333)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEE--------------------------------------------
T ss_pred cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEE--------------------------------------------
Confidence 88999 89998777888899999999876642211
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC----CeEEEEEccCCCceeeEeeccCCcc
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
...+...+.+++++++|+++++. .+ +.|.+||.++..... +. ..
T Consensus 82 -------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~-~~-----~~ 130 (333)
T 2dg1_A 82 -------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD-II-----ED 130 (333)
T ss_dssp -------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE-EE-----CS
T ss_pred -------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE-EE-----cc
Confidence 11234568899999999988887 55 689999988755321 11 11
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEc------CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
..+...+..++++|++ +++++... .+.|..+|..+++. ..+... ...+..++|+|+
T Consensus 131 ~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~------------~~~~~~i~~~~d 192 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQN------------ISVANGIALSTD 192 (333)
T ss_dssp SSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEEE------------ESSEEEEEECTT
T ss_pred CccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE-----EEeecC------------CCcccceEECCC
Confidence 1234578999999998 77766543 35566666655442 222111 135788999999
Q ss_pred CCEEEEe-c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 350 GRHILSR-D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 350 ~~~l~s~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
|+.|+.+ . ++.|.+||+...+..+..+...... ... . ...+..++++++|+++++...++.|.+||.+ +
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g 263 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G 263 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-C
Confidence 9866554 3 4899999997433333322110000 000 0 0011278999999988888788999999984 5
Q ss_pred ceee
Q 043890 428 STEA 431 (509)
Q Consensus 428 ~~~~ 431 (509)
+.+.
T Consensus 264 ~~~~ 267 (333)
T 2dg1_A 264 YPIG 267 (333)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5544
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=4.7e-17 Score=154.41 Aligned_cols=308 Identities=11% Similarity=0.045 Sum_probs=178.4
Q ss_pred cccceEEEEECCCCCeEEeecCC---CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchh
Q 043890 39 EVDIISAIEFDKTGDHLATGDRG---GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLE 115 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 115 (509)
|...+..++|+|||++||..... ..|.+||+.+++. ..+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~--------- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG--------- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC---------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC---------
Confidence 44457889999999998876543 4688888877654 22222220
Q ss_pred hhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc-------cCCccccCC
Q 043890 116 IEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV-------SPKPYLANG 188 (509)
Q Consensus 116 ~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g 188 (509)
.....+.| +|||++|+.++.++.|.+||+.+++...+...... +.++|..++..... ....|+|++
T Consensus 81 --~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg 153 (396)
T 3c5m_A 81 --DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLT 153 (396)
T ss_dssp --BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred --CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCccccccccccccCCCC
Confidence 22344788 99999999999999999999988765444332211 12222222111000 013466666
Q ss_pred CCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE-cC------CeEEEEEccC
Q 043890 189 GSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA-DD------LRINLWNLEI 260 (509)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d------g~i~iwd~~~ 260 (509)
+.+.............+.+|++.+.+.... ..+...+..+.|+| +++.|+.. .+ ..|.+||+..
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 154 SWEKFAEFYHTNPTCRLIKVDIETGELEVI--------HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp SHHHHHHHHHTCCCEEEEEEETTTCCEEEE--------EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred cceeeeeeccCCCcceEEEEECCCCcEEee--------ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 543111000113445677777765432221 23556688999999 78766655 32 4688888875
Q ss_pred CCceeeEeeccCCccCCC--ccceEEEEEeCCCCcEEEEEEcC-----CeEEEEECCCCcccCCceeeeccccCCCCccc
Q 043890 261 SNQSFNIVDVKPANMEDL--TEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDLRQSALCDSHAILFEEQEAPGSRSF 333 (509)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (509)
++.. .+..+ ...+..++|+|++ +.|+..+.+ +.|.+||+.+++. ..+...
T Consensus 226 ~~~~---------~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~-------- 282 (396)
T 3c5m_A 226 SNVR---------KIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLEN-----EEVMVM-------- 282 (396)
T ss_dssp CCCE---------ESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCE-----EEEEEC--------
T ss_pred Ccee---------EeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCe-----EEeeeC--------
Confidence 4321 12222 3467889999998 766665543 4599999988763 222111
Q ss_pred cccccccEEEEEEec-CCCEEEEec-----------------CCeEEEEECCCCCCceEEEeecccccccccccccCCCc
Q 043890 334 FTEIIASISDIKFAK-DGRHILSRD-----------------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSI 395 (509)
Q Consensus 334 ~~~~~~~i~~~~~s~-~~~~l~s~~-----------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
.... +.|+| ||++++++. +..|++||+.+ +. ...+..+...... +..+..
T Consensus 283 -----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~----~~~~~~ 350 (396)
T 3c5m_A 283 -----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KS-AQKLCKHSTSWDV----LDGDRQ 350 (396)
T ss_dssp -----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TB-CCEEEECCCCCCC----BTTBSS
T ss_pred -----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cc-eEEccCCCCcccc----cccccc
Confidence 1123 88999 999888642 27899999985 33 3344444321000 000000
Q ss_pred cceeeEEEcCCCCEEEEeeC-CCcEEE--EeCCCCce
Q 043890 396 FDKFECCLSGDGLRVATGSY-SNLFRV--FGCAPGST 429 (509)
Q Consensus 396 ~~v~~~~~s~~~~~l~~~~~-dg~i~i--w~~~~~~~ 429 (509)
..+..+.|+|||+.|+.++. ++...| +++.+++.
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 00116789999999887765 454444 45555443
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.1e-16 Score=164.15 Aligned_cols=153 Identities=12% Similarity=0.185 Sum_probs=102.8
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
.....+.| +||+++++++ |+.|++||+.+++....+....
T Consensus 17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~------------------------------------ 56 (740)
T 4a5s_A 17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST------------------------------------ 56 (740)
T ss_dssp CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT------------------------------------
T ss_pred ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechh------------------------------------
Confidence 34678999 9999888886 9999999999886433211100
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC---------CeEEEEEccCCCceeeE
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNI 267 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------g~i~iwd~~~~~~~~~~ 267 (509)
..........+.|+|||++|+.+ .+ +.+.+||+.+++.
T Consensus 57 ----------------------------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~---- 104 (740)
T 4a5s_A 57 ----------------------------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL---- 104 (740)
T ss_dssp ----------------------------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----
T ss_pred ----------------------------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE----
Confidence 01111123457899999999988 54 6778999998653
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc---------
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII--------- 338 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 338 (509)
..+..+...+..++|+||| +.||.+ .++.|++||+.++.. ..+.... .....+.++.
T Consensus 105 -----~~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~-----~~lt~~g--~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 105 -----ITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPS-----YRITWTG--KEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp -----CCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCC-----EECCSCC--BTTTEEESBCCHHHHHHTS
T ss_pred -----EEcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCce-----EEEcCCC--CccceecCcccccccchhc
Confidence 2456677789999999999 888877 468999999988763 1111110 0001111111
Q ss_pred ccEEEEEEecCCCEEEEe
Q 043890 339 ASISDIKFAKDGRHILSR 356 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~ 356 (509)
+....+.|||||+.|+.+
T Consensus 171 ~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp SSSBCEEECTTSSEEEEE
T ss_pred CCCcceEECCCCCEEEEE
Confidence 122458999999999986
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=3.4e-15 Score=138.99 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=173.7
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 45 AIEFDKTGDHLATGD----------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 45 ~v~~s~~~~~la~g~----------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.++|+|||++|++++ .++.|.+||..+.+. ...+...... .
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-----------------------~~~i~~~~~~------~ 104 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-----------------------EKEISLPPKR------V 104 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-----------------------EEEEEECTTB------C
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-----------------------EEEEEcCccc------c
Confidence 899999999999886 357899999887665 3333211100 0
Q ss_pred hhhccceeeEEEEcCCCceEEEeeC--CCeEEEEeccchhhhhh-hccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTN--DKTIKFWKVQEKKVKKI-ADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
........+++ +|||++|+++.. ++.|.+||+.+++.... ..
T Consensus 105 ~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--------------------------------- 149 (361)
T 2oiz_A 105 QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--------------------------------- 149 (361)
T ss_dssp CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG---------------------------------
T ss_pred ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec---------------------------------
Confidence 00134678899 999999998864 68999999987753221 11
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCC-CEEEEE-cCCeEEEEEccCCCceeeEee
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD 269 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~ 269 (509)
. .....+.+.|++ ..+++. .||.+.+|+............
T Consensus 150 -------------------------------------~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 150 -------------------------------------A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp -------------------------------------G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred -------------------------------------C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 0 011224456654 455555 788888888765332221100
Q ss_pred ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC
Q 043890 270 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD 349 (509)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 349 (509)
. ...+.....++ .+.+++++ ..++..+.++.|.++|+....... ...+...... . ....-.......++|+|+
T Consensus 192 ~-~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~-~-~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 192 S-KQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE-D-KAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp C-CCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH-H-HHTTCEECCSSCEEEETT
T ss_pred c-cceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc-c-cccccccCCeeEEEEecC
Confidence 0 01122222222 33346776 566667788999999997654210 1111100000 0 000000011223789999
Q ss_pred CCEEEEe-c-----------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 350 GRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 350 ~~~l~s~-~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
++.++.+ . .+.|.+||+.+ .+.+..+..+. .. .++|+|||++|++++. +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~---------------~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--AL---------------SMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CC---------------EEEEETTTTEEEEECS-S
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--ee---------------EEEECCCCCEEEEeCC-C
Confidence 8877764 2 24899999997 67778777665 22 8999999999998887 9
Q ss_pred cEEEEeCCCC--ceeeeeeccCCCceeEEEEcCCCC
Q 043890 418 LFRVFGCAPG--STEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 418 ~i~iw~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
.|.+||..++ +.+. ++..+......++++|++.
T Consensus 326 ~v~v~D~~t~~l~~~~-~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLR-TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEEEE-EETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcceeeE-EeccCCCCcEEEEecCCCC
Confidence 9999999999 8887 7766677778899999875
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=3e-16 Score=148.46 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=97.6
Q ss_pred ccccCeEEEEECC-CCCEEEEE-c------CCeEEEEEccCCCceeeEeeccCCccCCCc--cceEEEEEeCCCCcEEEE
Q 043890 228 AHDYHINSISNNS-DGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAY 297 (509)
Q Consensus 228 ~~~~~v~~i~~~~-~~~~l~~~-~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~ 297 (509)
.+...+..+.|+| +|+.|+.. . ...|.++|....... .+..+. ..+..++|+|+| +.|+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---------~l~~~~~~~~~~~~~~spdg-~~l~~ 254 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR---------KVKTHAEGESCTHEFWVPDG-SALVY 254 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE---------ESCCCCTTEEEEEEEECTTS-SCEEE
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE---------EeeeCCCCcccccceECCCC-CEEEE
Confidence 3455688999999 99988876 4 237778887654321 222333 357889999999 65544
Q ss_pred EE-cCC----eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe---------c-CCeEE
Q 043890 298 SS-SKG----SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR---------D-YMTLK 362 (509)
Q Consensus 298 ~~-~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---------~-~~~i~ 362 (509)
.+ .++ .|.+||+.+++.. .+..+.... . .......+.|+|||+.|+.. . +..|+
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~~-----~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENR--QLTSMPACS-----H----LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEE--EEEEECCEE-----E----EEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred EecCCCCCcceEEEEecCCCceE--EEEcCCCce-----e----eeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 33 322 3999999988631 111111100 0 00001123799999988752 2 37899
Q ss_pred EEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCC
Q 043890 363 LWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCA 425 (509)
Q Consensus 363 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~ 425 (509)
+||+.+ .....+..+..... .+.. +....+..++|+|||+.|+.++ .+|...||.++
T Consensus 324 ~~d~~~--~~~~~l~~~~~~~~---~~~~-~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 324 VFNMKN--GTQHRVARHDTSWK---VFEG-DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEETTT--TEEEEEEECCCCCC---CBTT-BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEeccC--CceEEeccccCccc---cccc-ccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 999986 33455555443100 0000 0000012789999999888766 46766666544
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=5e-15 Score=137.90 Aligned_cols=177 Identities=11% Similarity=0.013 Sum_probs=102.9
Q ss_pred CeEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
....++++|+|++|+++ . ++.|.+||+++.+....+ +. . .....+.+.|++...+++.+.||.+.+|+
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~-------i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDV-------TA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEE-------GG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEE-------ec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 35578999999999887 3 589999999987543220 11 1 11223567787657888899999999999
Q ss_pred CCC-CcccCCce---eeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCc-eEEEeecccc
Q 043890 309 LRQ-SALCDSHA---ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGP-VATFQVHEYL 382 (509)
Q Consensus 309 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~-~~~~~~~~~~ 382 (509)
+.. ++.. ... ..+... ..+ ..+.+++++..++..+ ++.|.++|+...... ...+......
T Consensus 180 ~~~~g~~~-~~~~~~~~~~~~------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 180 LGEDGKVA-SQSRSKQMFSVK------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp ECTTSSEE-EEEECCCCSCTT------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred ECCCCcEe-eeccccceEcCC------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 875 3321 000 011111 011 1233467777666554 489999999752211 1122111000
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeeC-----------CCcEEEEeCCCCceeeeeeccC
Q 043890 383 RPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-----------SNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
... .... ... ...++|+|+++.++++.. .+.|.+||+.+++.+. ++..+
T Consensus 246 ~~~-~~~~-p~g---~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-~i~~~ 305 (361)
T 2oiz_A 246 DKA-KNWV-PGG---YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-RIPGR 305 (361)
T ss_dssp HHH-TTCE-ECC---SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-EEECT
T ss_pred ccc-cccc-cCC---eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE-EEecC
Confidence 000 0000 000 013789999888877643 3489999999998887 65544
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=7.3e-15 Score=135.26 Aligned_cols=261 Identities=10% Similarity=0.063 Sum_probs=168.4
Q ss_pred ccceEEEEECCCCCeEEeecCC------------------------CeEEEEEccCCCCCCCccccccccccccccCCcc
Q 043890 40 VDIISAIEFDKTGDHLATGDRG------------------------GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEF 95 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~d------------------------g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (509)
-+.+.+|+++|+|+++++...+ +.|.+||..+++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------------------- 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------------------- 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence 4678999999999999988877 3677887766654
Q ss_pred eEEeeec-cCCcchhhccchhhhccceeeEEEEcCCCceEEEeeCCCeEEEEeccchh-hhhhhccCCCCCcccCCCCcc
Q 043890 96 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK-VKKIADMNVDPSKAVGNGNVA 173 (509)
Q Consensus 96 ~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (509)
...+. ++- .....|++ +++|+++++...++.|++|+..... .........
T Consensus 82 --~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~------------ 133 (329)
T 3fvz_A 82 --LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM------------ 133 (329)
T ss_dssp --EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT------------
T ss_pred --EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC------------
Confidence 22222 221 45788999 9999988888889999999986431 111000000
Q ss_pred cCCCCccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECC-CCCEEEEE--cC
Q 043890 174 SSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNS-DGETFISA--DD 250 (509)
Q Consensus 174 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~--~d 250 (509)
..| ...++......++++| +++++++. .+
T Consensus 134 ------------~~g------------------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 134 ------------QPG------------------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp ------------BCC------------------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred ------------CCC------------------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 000 0022334578999999 78887776 48
Q ss_pred CeEEEEEccCCCceeeEeeccCC--ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC
Q 043890 251 LRINLWNLEISNQSFNIVDVKPA--NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP 328 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 328 (509)
+.|++|+.. +.....+...... ....+-.....++++|++.+++++...++.|++||..+++. +..+...
T Consensus 166 ~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~----~~~~~~~--- 237 (329)
T 3fvz_A 166 SRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF----VREIKHA--- 237 (329)
T ss_dssp CEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEEECCT---
T ss_pred CeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE----EEEEecc---
Confidence 999999944 4433221100000 00123345789999998337888888899999999987664 3444322
Q ss_pred CCccccccccccEEEEEEecCCCEEEEe-------c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceee
Q 043890 329 GSRSFFTEIIASISDIKFAKDGRHILSR-------D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFE 400 (509)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~-------~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 400 (509)
.+...+..++|+| +..+++. . ...|++||+.+ ++.+..+...... ......
T Consensus 238 -------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------~~~p~~ 296 (329)
T 3fvz_A 238 -------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------FDMPHD 296 (329)
T ss_dssp -------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------CSSEEE
T ss_pred -------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------cCCeeE
Confidence 1224678899999 4333332 2 25899999986 6666665321111 011228
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 401 CCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 401 ~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
++++|+|.++++...++.|++|++..
T Consensus 297 ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 297 IVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99999998888888899999999863
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=3.8e-14 Score=127.80 Aligned_cols=243 Identities=10% Similarity=0.139 Sum_probs=162.8
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..+.++++ +++++++++...++.|.+||... +........ +
T Consensus 30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~---------------------------~--------- 70 (286)
T 1q7f_A 30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEG-RFKFQFGEC---------------------------G--------- 70 (286)
T ss_dssp SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTS-CEEEEECCB---------------------------S---------
T ss_pred CCCceEEE--CCCCCEEEEECCCCEEEEECCCC-cEEEEeccc---------------------------C---------
Confidence 45888999 89998888888899999999763 221110000 0
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEE-CCCCCEEEEE-c-CCeEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISN-NSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
...++...+..+++ .++++++++. . ++.|++||. +++....+
T Consensus 71 ---------------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~------- 115 (286)
T 1q7f_A 71 ---------------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF------- 115 (286)
T ss_dssp ---------------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEE-------
T ss_pred ---------------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEe-------
Confidence 00233445788999 5778777777 4 899999994 34432211
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
...+...+.+++++|++ +++++...++.|.+||..... ...+... .+...+..++++++|++++
T Consensus 116 ~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~-----~~~~~~~----------~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 116 GATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNV-----LHKFGCS----------KHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE-----EEEEECT----------TTCSSEEEEEECSSSEEEE
T ss_pred cCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCCE-----EEEeCCC----------CccCCcEEEEECCCCCEEE
Confidence 11234567899999998 888777778999999965432 2333211 1124688999999999777
Q ss_pred Eec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-cEEEEeCCCCceeee
Q 043890 355 SRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-LFRVFGCAPGSTEAT 432 (509)
Q Consensus 355 s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~ 432 (509)
+.. ++.|++||.. +..+..+..+... .....++++++|+++++...++ .|.+|+.+ ++.+.
T Consensus 180 ~~~~~~~i~~~~~~--g~~~~~~~~~g~~-------------~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~- 242 (286)
T 1q7f_A 180 SDNRAHCVKVFNYE--GQYLRQIGGEGIT-------------NYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLIS- 242 (286)
T ss_dssp EEGGGTEEEEEETT--CCEEEEESCTTTS-------------CSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEE-
T ss_pred EECCCCEEEEEcCC--CCEEEEEccCCcc-------------CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEE-
Confidence 765 5999999975 3555555432110 0122899999999888887776 99999964 55554
Q ss_pred eeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 433 TLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 433 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
.+..+.. ...+..++++|+++++++..++.|++|+
T Consensus 243 ~~~~~~~-----------------------------------------~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 243 ALESKVK-----------------------------------------HAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp EEEESSC-----------------------------------------CSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred EEcccCC-----------------------------------------CCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 3332210 1236789999999877775558899996
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.4e-13 Score=134.57 Aligned_cols=321 Identities=11% Similarity=0.028 Sum_probs=200.1
Q ss_pred CCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcC
Q 043890 50 KTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTA 129 (509)
Q Consensus 50 ~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~ 129 (509)
|.+.++++...++.|.++|..+++. +..+... ..+..+.| +|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v-----------------------~~~i~~g-------------~~p~~v~~--Sp 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRL--SA 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEE--CT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE-----------------------EEEEeCC-------------CCccceEE--CC
Confidence 4456777778889999999998876 3444322 23668888 99
Q ss_pred CCceEEEeeCCCeEEEEecc--chhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccc
Q 043890 130 NGALFLLSTNDKTIKFWKVQ--EKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRL 207 (509)
Q Consensus 130 ~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 207 (509)
||+++++++.|+.|.+||+. +.+....
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~--------------------------------------------------- 235 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAE--------------------------------------------------- 235 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEE---------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEE---------------------------------------------------
Confidence 99999999999999999985 4322110
Q ss_pred ccccccccceeeeeeeeeecccccCeEEEEEC----CCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccC---CC
Q 043890 208 PTVTSNETSLVARCRRVYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANME---DL 278 (509)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~ 278 (509)
. .. ......++|+ |+|++++++ .++.|.++|..+.+....+ ........ .|
T Consensus 236 -----------------i-~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i-~~~~~~~~~~~~~ 295 (567)
T 1qks_A 236 -----------------I-KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ-STRGMTYDEQEYH 295 (567)
T ss_dssp -----------------E-EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE-ECCEECTTTCCEE
T ss_pred -----------------E-ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE-ecccccccccccc
Confidence 0 11 1225689999 699998887 5899999999886654332 11111111 12
Q ss_pred c-cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 279 T-EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 279 ~-~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
. ..+..+..+++++.+++....+|.|.++|....+.. .+..+... .....+.|+|+|++++++.
T Consensus 296 p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~--~v~~i~~~-------------~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL--KTTEISAE-------------RFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE--EEEEEECC-------------SSEEEEEECTTSCEEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc--eeeeeecc-------------ccccCceECCCCCEEEEEe
Confidence 2 267889999987566666667899999998875421 01222111 3467889999999988763
Q ss_pred --CCeEEEEECCCCCCceEEEee-cccccccccccccCCCccceeeEE-EcCCCCE-EEEee-CCCcEEEEeCCC-----
Q 043890 358 --YMTLKLWDINMDSGPVATFQV-HEYLRPKLCDLYENDSIFDKFECC-LSGDGLR-VATGS-YSNLFRVFGCAP----- 426 (509)
Q Consensus 358 --~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~-l~~~~-~dg~i~iw~~~~----- 426 (509)
++.|.++|+.+ ++.+..+.. ...+- .-. .+. ++|++.. .+++. .++.|.++|..+
T Consensus 361 ~~sn~V~ViD~~t-~kl~~~i~vgg~~Ph----------pg~---g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 361 NARNKLVVIDTKE-GKLVAIEDTGGQTPH----------PGR---GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp GGGTEEEEEETTT-TEEEEEEECSSSSBC----------CTT---CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CCCCeEEEEECCC-CcEEEEEeccCcCCC----------Ccc---ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 49999999997 555555543 11110 000 233 5787544 44443 468999999987
Q ss_pred --CceeeeeeccCCCceeEEEEcCCCCCCcc----------cceeeEeecCCC-----CCcc-cCC-Cc--cc-ccccce
Q 043890 427 --GSTEATTLEASKNPMRRQVQTPSRPSRSL----------SSITRVVRRGSD-----VPGV-DTN-GN--SF-DFTTKL 484 (509)
Q Consensus 427 --~~~~~~~~~~~~~~v~~~~~s~~~~~~~~----------~~~~~~~~~~~~-----~~~~-~~~-~~--~~-~~~~~i 484 (509)
.+.+. ++......-.-+..+|+++..-+ ...+.+++.... ...+ .+. +. .+ .-.+++
T Consensus 427 ~~~kvv~-~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 427 NAWKILD-SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp TBTSEEE-EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred ccCEEEE-EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 45555 66655433344667777764322 123334432211 1000 000 00 00 013678
Q ss_pred EEEEEcCCCcEEEEEe------cCceEEEeC
Q 043890 485 LHLAWHPTENSIACAA------ANSLYMYYA 509 (509)
Q Consensus 485 ~~~~~~p~~~~la~~~------~~~i~v~~~ 509 (509)
.++.|+|+|+.+.++. .+.|.|+++
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 9999999998887763 378888763
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=1.7e-14 Score=132.83 Aligned_cols=282 Identities=9% Similarity=0.075 Sum_probs=166.5
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
+.+.+|++ +++|+++++...++.+.+++......... . + .
T Consensus 24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~---~---------------------------~--------~ 63 (329)
T 3fvz_A 24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQ---R---------------------------G--------L 63 (329)
T ss_dssp SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSC---G---------------------------G--------G
T ss_pred CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecc---c---------------------------c--------c
Confidence 56899999 99999888888776554443322110000 0 0 0
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCC-ceeeEeec-cCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDV-KPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~-~~~~~~~~-~~~~ 274 (509)
.....+.|.+||..+... .+.+..++-.....++++++|+++++. .++.|++||..... ....+-.. .+..
T Consensus 64 ~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~ 137 (329)
T 3fvz_A 64 GPIEEDTILVIDPNNAEI------LQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS 137 (329)
T ss_dssp CSCCSCCEEEECTTTCCE------EEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC
T ss_pred ccccCCcEEEEECCCCeE------EeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC
Confidence 011233455555543322 112212344568899999999988888 78999999986542 22211000 0000
Q ss_pred cCCCccceEEEEEeC-CCCcEEEEEE-cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC-CC
Q 043890 275 MEDLTEVITSAEFHP-THCNMLAYSS-SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD-GR 351 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~-~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~ 351 (509)
-..+-.....++++| ++ +++++.+ .++.|++||.. +.. +..+....... ....++-.....++++|+ +.
T Consensus 138 ~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~-g~~----~~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 138 DQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPS-GKF----VTQWGEESSGS--SPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp STTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTT-SCE----EEEECEECCSS--SCCTTEESCEEEEEEETTTTE
T ss_pred CccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCC-CCE----EEEeccCCCCC--CCCCcccCCCcEEEEECCCCE
Confidence 023445788999999 66 7777776 68999999944 432 33332211000 000112235789999998 66
Q ss_pred EEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC------CCCEEEEeeCCCcEEEEeC
Q 043890 352 HILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG------DGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 352 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~ 424 (509)
++++.. ++.|++||..+ ++.+..+....... .++.++|+| +|+..++...+..|++|+.
T Consensus 210 l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp EEEEETTTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEET
T ss_pred EEEEECCCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEc
Confidence 556554 49999999985 56666664322110 122778888 3333333344568999999
Q ss_pred CCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec-Cc
Q 043890 425 APGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NS 503 (509)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~ 503 (509)
.+++.+. .+.... . ....+..++++|++.++++... +.
T Consensus 276 ~~g~~~~-~~~~~~------------~----------------------------~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 276 SSGEIID-VFKPVR------------K----------------------------HFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp TTCCEEE-EECCSS------------S----------------------------CCSSEEEEEECTTSEEEEEESSSCC
T ss_pred CCCeEEE-EEcCCC------------C----------------------------ccCCeeEEEECCCCCEEEEECCCCE
Confidence 9998776 443110 0 0244688999999966665554 78
Q ss_pred eEEEe
Q 043890 504 LYMYY 508 (509)
Q Consensus 504 i~v~~ 508 (509)
|++|+
T Consensus 315 I~~~~ 319 (329)
T 3fvz_A 315 VWKFT 319 (329)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88886
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=1.7e-12 Score=117.75 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=161.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeec--cCCcchhhccchhh
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ--SHEPEFDYLKSLEI 116 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~ 116 (509)
+...+.+++++++|+++++...++.|.+||.. ++. ..+. .+.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~------------------------~~~~~~~~~----------- 56 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI------------------------TEYPLPTPD----------- 56 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE------------------------EEEECSSTT-----------
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe------------------------EEecCCccc-----------
Confidence 44678999999999988877768899999987 433 1111 111
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..+.++++ ++++.++++...++.|..|+.. ++.... .
T Consensus 57 -~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~-------------------------------------- 93 (299)
T 2z2n_A 57 -AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-T-------------------------------------- 93 (299)
T ss_dssp -CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E--------------------------------------
T ss_pred -CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-e--------------------------------------
Confidence 45888998 8999877777768899999875 221100 0
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
.......+.++++.++++++++. .++.|.+||. +++.. .. ..
T Consensus 94 -----------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~------~~ 136 (299)
T 2z2n_A 94 -----------------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY------EL 136 (299)
T ss_dssp -----------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE------EC
T ss_pred -----------------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee------cC
Confidence 01122347789999999888887 7889999998 43322 11 12
Q ss_pred CCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
......+..+++.+++ +++++...++.|..||. +++. ..+.... ....+..++++++|++.++
T Consensus 137 ~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~~----------~~~~~~~i~~~~~g~l~v~ 199 (299)
T 2z2n_A 137 PNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDI-----TEFKIPT----------PASGPVGITKGNDDALWFV 199 (299)
T ss_dssp SSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE-----EEEECSS----------TTCCEEEEEECTTSSEEEE
T ss_pred CCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcE-----EEeeCCC----------CCCcceeEEECCCCCEEEE
Confidence 2234568899999998 77777666789999998 5542 2221110 1145789999999997777
Q ss_pred ec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 356 RD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 356 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
.. .+.|.+||. + +. +..+..... ...+..++++++|+++++...++.|..||. +++
T Consensus 200 ~~~~~~i~~~~~-~-g~-~~~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 200 EIIGNKIGRITT-S-GE-ITEFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp ETTTTEEEEECT-T-CC-EEEEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred ccCCceEEEECC-C-Cc-EEEEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECC-CCc
Confidence 64 489999998 4 33 222221110 011238899999997776667889999998 454
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=5.2e-14 Score=127.61 Aligned_cols=243 Identities=10% Similarity=0.051 Sum_probs=163.3
Q ss_pred cccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 39 EVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 39 h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~------------ 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS------------ 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC------------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC------------
Confidence 445678999999998 7888888999999998865 3 2333333
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..+.++++ +++|+++++...++.|.+||..+++.......
T Consensus 69 ~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~-------------------------------------- 108 (296)
T 3e5z_A 69 HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADS-------------------------------------- 108 (296)
T ss_dssp SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECE--------------------------------------
T ss_pred CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeec--------------------------------------
Confidence 55889999 99998877777778999999977653221000
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEE----E-c-------------CCeEEEEEcc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS----A-D-------------DLRINLWNLE 259 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------dg~i~iwd~~ 259 (509)
........+..++++|+|+++++ + . .+.|..++..
T Consensus 109 ---------------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 109 ---------------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp ---------------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred ---------------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 00011123667899999998887 3 1 2355555544
Q ss_pred CCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC-CCcccCCceeeeccccCCCCcccccccc
Q 043890 260 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR-QSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
.... .+..+......++|+|++ +.+++.+.++.|.+||+. .+.+. .....+ .. +.
T Consensus 162 --g~~~--------~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~-~~-----------~~ 217 (296)
T 3e5z_A 162 --GTLS--------APIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE-YQGVHF-TV-----------EP 217 (296)
T ss_dssp --SCEE--------EEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE-EEEEEE-CC-----------SS
T ss_pred --CCEE--------EeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc-CCCeEe-eC-----------CC
Confidence 2221 122344567899999998 777777778999999997 33310 001222 11 11
Q ss_pred ccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEE-cCCCCEEEEeeCCC
Q 043890 339 ASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCL-SGDGLRVATGSYSN 417 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg 417 (509)
..+..++++++|++.++. ++.|.+||.. ++.+..+..+.. +. +++| +|+++.|++++.+
T Consensus 218 ~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~~---------------~~~f~~~d~~~L~v~t~~- 277 (296)
T 3e5z_A 218 GKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-TS---------------NLCFGGPEGRTLYMTVST- 277 (296)
T ss_dssp SCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-CC---------------EEEEESTTSCEEEEEETT-
T ss_pred CCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-ce---------------eEEEECCCCCEEEEEcCC-
Confidence 356779999999987777 7899999986 466666665544 33 7889 5899989888876
Q ss_pred cEEEEeCCCCce
Q 043890 418 LFRVFGCAPGST 429 (509)
Q Consensus 418 ~i~iw~~~~~~~ 429 (509)
.+.-++.++.+.
T Consensus 278 ~l~~~~~~~~~~ 289 (296)
T 3e5z_A 278 EFWSIETNVRGL 289 (296)
T ss_dssp EEEEEECSCCBC
T ss_pred eEEEEEcccccc
Confidence 455556665543
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=5.7e-14 Score=143.50 Aligned_cols=249 Identities=10% Similarity=0.099 Sum_probs=159.3
Q ss_pred cccceEEEEECCCCCeEEeecCCC-----eEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGG-----RVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg-----~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
|...+..++|||||++||.+..++ .|++||+.+++. ......+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~-----------------------~~~~~~~--------- 170 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-----------------------LPDVLER--------- 170 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-----------------------EEEEEEE---------
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----------------------CcccccC---------
Confidence 445789999999999999765543 899999998775 2111111
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCe----------------EEEEeccchhhhhhhccCCCCCcccCCCCcccCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKT----------------IKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSN 177 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (509)
..+..+.| +|||+.|+.++.++. |++|++.++.....
T Consensus 171 ----~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--------------------- 223 (710)
T 2xdw_A 171 ----VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--------------------- 223 (710)
T ss_dssp ----ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE---------------------
T ss_pred ----cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce---------------------
Confidence 23678999 999999999988765 67777655431100
Q ss_pred CccCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeee-ecccccCeEEEEECCCCCEEEEE-c-----C
Q 043890 178 NVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVY-AHAHDYHINSISNNSDGETFISA-D-----D 250 (509)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~-----d 250 (509)
..+ ...|...+..+.|+|+|++|+.. . +
T Consensus 224 ---------------------------------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 224 ---------------------------------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp ---------------------------------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred ---------------------------------------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 000 02234457789999999998876 4 5
Q ss_pred CeEEEEEccC------CCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC----CeEEEEECCCCcccCCcee
Q 043890 251 LRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDLRQSALCDSHAI 320 (509)
Q Consensus 251 g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~ 320 (509)
..|++||+.+ +..... .+..+...+.. .|+|++ ..|+..+.. +.|.+||+.++... ..+
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~ 327 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWK 327 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCE
T ss_pred cEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cce
Confidence 6899999986 321111 22334444444 488888 555555442 36999999876410 012
Q ss_pred eeccccCCCCccccccccccEEEEEEecCCCEEEEec-CC--eEEEEECCCCCCceEEEeecccccccccccccCCCccc
Q 043890 321 LFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFD 397 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
.+..+.. ...+..++|++++.++++.. ++ .|++||+.+ ++.+..+..+...+
T Consensus 328 ~l~~~~~----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v-------------- 382 (710)
T 2xdw_A 328 VLVPEHE----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV-------------- 382 (710)
T ss_dssp EEECCCS----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE--------------
T ss_pred eccCCCC----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE--------------
Confidence 2222210 02578899997777777764 44 577778754 45556665553332
Q ss_pred eeeEEEcCCCCEEEEee----CCCcEEEEeCCCCc
Q 043890 398 KFECCLSGDGLRVATGS----YSNLFRVFGCAPGS 428 (509)
Q Consensus 398 v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~ 428 (509)
..+.++|+++.|+... ..+.|++||+.+++
T Consensus 383 -~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 -VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2678899987666332 35799999998876
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.5e-14 Score=146.80 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=99.7
Q ss_pred cCeEEEEECCCCCEEEEE-cC--------CeEEEEEcc-CCC--ceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEE
Q 043890 231 YHINSISNNSDGETFISA-DD--------LRINLWNLE-ISN--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 298 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~ 298 (509)
..+..++|+|||+.|+.+ .+ ..|++||+. ++. .... ....+...+..+.|+|+| ++++++
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~-------l~~~~~~~~~~~~~spdg-~l~~~~ 259 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT-------LLGGPEEAIAQAEWAPDG-SLIVAT 259 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE-------EEEETTBCEEEEEECTTS-CEEEEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE-------eCCCCCceEcceEECCCC-eEEEEE
Confidence 446678899999999876 44 379999998 441 2221 122346788999999999 688888
Q ss_pred EcCC--eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEE
Q 043890 299 SSKG--SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATF 376 (509)
Q Consensus 299 ~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~ 376 (509)
..++ .|.+||+.+++. ..+........ ...-...+..++|+|++++++++..+.++||.+......+..+
T Consensus 260 ~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~---~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAA-----TQLCRREEEFA---GPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDA 331 (662)
T ss_dssp CTTSSCEEEEECTTTCCE-----EESSCCSSBSS---CCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEEC
T ss_pred CCCCCeEEEEEECCCCce-----eeccccccccc---CccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEe
Confidence 8888 566667655542 22211110000 0000012567899999999988744778888443223445666
Q ss_pred eecccccccccccccCCCccceeeEEEcCCCCE--EEEeeCCC--cEEEEeCCCCceee
Q 043890 377 QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR--VATGSYSN--LFRVFGCAPGSTEA 431 (509)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~~ 431 (509)
..+...+. .+ ++++++. +++++.+. .|++||+.+++...
T Consensus 332 ~~~~~~~~---------------~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 332 AGPWTEWA---------------AT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp CSSCCEEE---------------EE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred cCCCCeEE---------------EE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 55533221 34 1444443 33445454 56666777776543
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=1.5e-13 Score=122.78 Aligned_cols=240 Identities=7% Similarity=0.018 Sum_probs=158.2
Q ss_pred ceEEEEECCCCCeEE-eecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 42 IISAIEFDKTGDHLA-TGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 42 ~I~~v~~s~~~~~la-~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
...+++++++|++++ +...++.|.+|+..+... ......+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------------------TVLPFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------------------EECCCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------------------ceEeeCCc------------CCc
Confidence 678999999999777 556788999998765443 11101111 347
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
.+|++ +++++++++.. ++.|.+||..+......
T Consensus 70 ~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-------------------------------------------- 102 (270)
T 1rwi_B 70 QGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL-------------------------------------------- 102 (270)
T ss_dssp CCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC--------------------------------------------
T ss_pred ceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee--------------------------------------------
Confidence 88999 88988665555 88999999765431100
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCc
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 279 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
.......+..++++++|+++++. .++.|.+|+..+..... ......
T Consensus 103 -------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~--------~~~~~~ 149 (270)
T 1rwi_B 103 -------------------------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--------LPFTGL 149 (270)
T ss_dssp -------------------------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE--------CCCCSC
T ss_pred -------------------------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe--------eccccC
Confidence 01112347789999999988777 78899999765433221 111223
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y 358 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~ 358 (509)
..+.++++++++ +++++...++.|.+||...... ...... +...+.+++++++|.++++.. +
T Consensus 150 ~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~-----~~~~~~-----------~~~~p~~i~~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 150 NDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQ-----VVLPFT-----------DITAPWGIAVDEAGTVYVTEHNT 212 (270)
T ss_dssp CSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCE-----EECCCS-----------SCCSEEEEEECTTCCEEEEETTT
T ss_pred CCceeEEEeCCC-CEEEEECCCCEEEEEecCCCce-----Eeeccc-----------CCCCceEEEECCCCCEEEEECCC
Confidence 456789999998 7777776788999999887642 111100 013678999999998777764 4
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+.|.+||... .........+.. .+..++++++|+++++...++.|++|++...+.
T Consensus 213 ~~v~~~~~~~-~~~~~~~~~~~~---------------~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 213 NQVVKLLAGS-TTSTVLPFTGLN---------------TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCEEEECTTC-SCCEECCCCSCS---------------CEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CcEEEEcCCC-CcceeeccCCCC---------------CceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 8999999874 222221111101 122899999999888888999999999886554
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=2e-13 Score=123.67 Aligned_cols=232 Identities=10% Similarity=0.048 Sum_probs=151.5
Q ss_pred ccceeeEEEEcCCCc-eEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 118 EKINKIRWCQTANGA-LFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
....++.| +++++ +++++..++.|..|+..++ ...
T Consensus 28 ~~~eg~~~--d~~g~~l~~~~~~~~~i~~~~~~~~-~~~----------------------------------------- 63 (296)
T 3e5z_A 28 TWTEGPVY--VPARSAVIFSDVRQNRTWAWSDDGQ-LSP----------------------------------------- 63 (296)
T ss_dssp SSEEEEEE--EGGGTEEEEEEGGGTEEEEEETTSC-EEE-----------------------------------------
T ss_pred ccccCCeE--eCCCCEEEEEeCCCCEEEEEECCCC-eEE-----------------------------------------
Confidence 45778999 89998 7778888999999998765 111
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 275 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 275 (509)
+..+...+.+++++++|+++++. .++.|.+||..+++... +... ..
T Consensus 64 -----------------------------~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~-~~~~---~~ 110 (296)
T 3e5z_A 64 -----------------------------EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES-IADS---FE 110 (296)
T ss_dssp -----------------------------EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE-EECE---ET
T ss_pred -----------------------------EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE-Eeec---cC
Confidence 12234558899999999988887 67899999997665321 1100 00
Q ss_pred CCCccceEEEEEeCCCCcEEEEE----E-------------cCCeEEEEECCCCcccCCceeeeccccCCCCcccccccc
Q 043890 276 EDLTEVITSAEFHPTHCNMLAYS----S-------------SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEII 338 (509)
Q Consensus 276 ~~~~~~i~~l~~~~~~~~~l~~~----~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (509)
......+..++++|+| +++++. + ..+.|..+|.. ++ ...+... .
T Consensus 111 ~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~~~~~~~------------~ 171 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-----LSAPIRD------------R 171 (296)
T ss_dssp TEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-----EEEEECC------------C
T ss_pred CCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CC-----EEEeecC------------C
Confidence 1112346789999998 777763 2 13456666654 33 2222211 1
Q ss_pred ccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCc---eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 043890 339 ASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 414 (509)
.....++|+|+|+.+++.. ++.|++||+...+.. ...+..+... +..++++++|+++++.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~---------------p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK---------------TDGLRVDAGGLIWASA- 235 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC---------------CCSEEEBTTSCEEEEE-
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC---------------CCeEEECCCCCEEEEc-
Confidence 4578899999999986555 489999999732333 1222111111 1178999999977665
Q ss_pred CCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEE-cCCC
Q 043890 415 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAW-HPTE 493 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~ 493 (509)
++.|.+|+.+ ++.+. .+..+. . +.+++| +|++
T Consensus 236 -~~~v~~~~~~-g~~~~-~~~~~~-------------------------------------------~-~~~~~f~~~d~ 268 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELG-RVLTPQ-------------------------------------------T-TSNLCFGGPEG 268 (296)
T ss_dssp -TTEEEEECTT-SCEEE-EEECSS-------------------------------------------C-CCEEEEESTTS
T ss_pred -CCeEEEECCC-CCEEE-EEECCC-------------------------------------------C-ceeEEEECCCC
Confidence 8899999987 66655 444333 2 566777 5777
Q ss_pred cEEEEEecCceEEEe
Q 043890 494 NSIACAAANSLYMYY 508 (509)
Q Consensus 494 ~~la~~~~~~i~v~~ 508 (509)
+.|.+++.+.++.++
T Consensus 269 ~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 269 RTLYMTVSTEFWSIE 283 (296)
T ss_dssp CEEEEEETTEEEEEE
T ss_pred CEEEEEcCCeEEEEE
Confidence 777777777666554
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=6.2e-14 Score=130.27 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=140.2
Q ss_pred cccceEEEEECCCCCeEEeec---------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchh
Q 043890 39 EVDIISAIEFDKTGDHLATGD---------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFD 109 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~---------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 109 (509)
....+..+++ ||+.||... .++.|.+||+.+++. ..+
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------------------------~~l-------- 58 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR------------------------RFI-------- 58 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------------------------EEE--------
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce------------------------EEc--------
Confidence 3456778888 998887642 256799999887654 112
Q ss_pred hccchhhhccceeeEEEEcCCCceEEEeeCC---Ce--EEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCcc
Q 043890 110 YLKSLEIEEKINKIRWCQTANGALFLLSTND---KT--IKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPY 184 (509)
Q Consensus 110 ~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (509)
..+..+.| +|||++|+.++.+ +. |.+|++.+++....
T Consensus 59 --------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l---------------------------- 100 (347)
T 2gop_A 59 --------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI---------------------------- 100 (347)
T ss_dssp --------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE----------------------------
T ss_pred --------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEE----------------------------
Confidence 23778899 9999999988754 33 66677765542211
Q ss_pred ccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC-------------
Q 043890 185 LANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD------------- 250 (509)
Q Consensus 185 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d------------- 250 (509)
..+.. +..+.|+|+|+.|+.+ .+
T Consensus 101 ------------------------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 101 ------------------------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp ------------------------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred ------------------------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 11222 7888999999888776 32
Q ss_pred --------------CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC-------eEEEEEC
Q 043890 251 --------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDL 309 (509)
Q Consensus 251 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg-------~i~vwd~ 309 (509)
..|++||+.+++....+ .. . .+..+.|+|++ +++++..++ ...+|.+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l--------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEF--------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEE--------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeee--------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence 57889999876531221 11 2 67789999997 666665542 3444444
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C--------CeEEEEECCCCCCceEEEeecc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y--------MTLKLWDINMDSGPVATFQVHE 380 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~--------~~i~iwd~~~~~~~~~~~~~~~ 380 (509)
.+++ ...+.. + ..+..+ +|||+.|+.++ + ..|.+|| + ++.......+.
T Consensus 206 d~~~-----~~~l~~------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~ 262 (347)
T 2gop_A 206 EDGK-----EEKMFE------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVD 262 (347)
T ss_dssp ETTE-----EEEEEE------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCC
T ss_pred CCCc-----eEEecc------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCC
Confidence 4333 122211 1 234443 99999887653 2 3677888 3 33322222222
Q ss_pred cccccccccccCCCccceee-EEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 381 YLRPKLCDLYENDSIFDKFE-CCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
..+ .. +.|+ |+ ++++++.++.++|| +.+++.
T Consensus 263 ~~~---------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 263 RGV---------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp SEE---------------EEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred ccc---------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence 221 24 7899 88 88999999999999 876554
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=3.8e-13 Score=124.18 Aligned_cols=245 Identities=12% Similarity=0.123 Sum_probs=154.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
+...+.+++|+|+|++++++..++.|.+||..+++. ......+. .
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~~------------~ 87 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----------------------KRPFVSHK------------A 87 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------------------EEEEECSS------------S
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-----------------------EEEeeCCC------------C
Confidence 556779999999999888888899999999887664 12121233 5
Q ss_pred cceeeEEEEcCCCceEEEeeCC----CeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcce
Q 043890 119 KINKIRWCQTANGALFLLSTND----KTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKE 194 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 194 (509)
.+.+++| +++++++++...+ +.|.+||..++.......
T Consensus 88 ~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~------------------------------------ 129 (333)
T 2dg1_A 88 NPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE------------------------------------ 129 (333)
T ss_dssp SEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC------------------------------------
T ss_pred CcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc------------------------------------
Confidence 6899999 9999877777666 689999987654221100
Q ss_pred ecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c------CCeEEEEEccCCCceeeE
Q 043890 195 FSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D------DLRINLWNLEISNQSFNI 267 (509)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------dg~i~iwd~~~~~~~~~~ 267 (509)
...+...+.+++++|+|+++++. . .+.|..+|.++++. ..
T Consensus 130 -------------------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~- 176 (333)
T 2dg1_A 130 -------------------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TP- 176 (333)
T ss_dssp -------------------------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EE-
T ss_pred -------------------------------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EE-
Confidence 01122457889999999888876 3 24555555543322 11
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEE-EEEEcCCeEEEEECCC-CcccCCceeeeccccCCCCccccccccccEEEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASISDIK 345 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l-~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (509)
+......+..++|+|++ +.| ++.+.++.|.+||++. +.. ...+..... ..+.++ ..+..++
T Consensus 177 -------~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~----~~~~~~~~~----~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 177 -------IIQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVT----IQPFGATIP----YYFTGH-EGPDSCC 239 (333)
T ss_dssp -------EEEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSS----EEEEEEEEE----EECCSS-SEEEEEE
T ss_pred -------eecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcC----cccccceEE----EecCCC-CCCCceE
Confidence 11123357889999998 645 4555678999999964 221 111110000 000011 3578899
Q ss_pred EecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC
Q 043890 346 FAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 417 (509)
Q Consensus 346 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 417 (509)
++++|++.++.. ++.|.+||.. ++.+..+..+..... ....+.+++|+||++.|+.++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCcc
Confidence 999999877764 4899999985 455566544322000 000012889999987777666553
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=2.2e-13 Score=139.20 Aligned_cols=227 Identities=12% Similarity=0.057 Sum_probs=145.8
Q ss_pred ccceeeEEEEcCCCceEEEeeCCC-----eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 118 EKINKIRWCQTANGALFLLSTNDK-----TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
..+..++| ||||++|+.+..++ .|++||+.+++....
T Consensus 125 ~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------------------------ 166 (710)
T 2xdw_A 125 VALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------------------------ 166 (710)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------------------------
T ss_pred EEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------------------------
Confidence 35788899 99999999876543 899999988763221
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCe----------------EEE
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLR----------------INL 255 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~----------------i~i 255 (509)
... ...+..++|+|||+.|+.+ .++. |++
T Consensus 167 --------------------------------~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 167 --------------------------------VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp --------------------------------EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred --------------------------------ccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence 001 1125578999999998887 5544 999
Q ss_pred EEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-----CCeEEEEECCC------CcccCCceeeecc
Q 043890 256 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDLRQ------SALCDSHAILFEE 324 (509)
Q Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~~~~~~~~~~~~ 324 (509)
|++.++.....++ .....+...+..+.|+|++ ++|+.++. +..|.+||+.+ +.. ....+..
T Consensus 213 ~~l~t~~~~~~~v----~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~ 284 (710)
T 2xdw_A 213 HVLGTDQSEDILC----AEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---KWVKLID 284 (710)
T ss_dssp EETTSCGGGCEEE----ECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEEC
T ss_pred EECCCCcccceEE----eccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc---ceEEeeC
Confidence 9998765321110 0223345567899999999 77776664 56899999976 321 0233332
Q ss_pred ccCCCCccccccccccEEEEEEecCCCEEEEec-----CCeEEEEECCCCCC-ceEEEeecccccccccccccCCCccce
Q 043890 325 QEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-----YMTLKLWDINMDSG-PVATFQVHEYLRPKLCDLYENDSIFDK 398 (509)
Q Consensus 325 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-----~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (509)
+. ..+.. .|+|+|..|+..+ ...|.+||+.+... ....+..+.... .+
T Consensus 285 ~~------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-------------~~ 338 (710)
T 2xdw_A 285 NF------------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD-------------VL 338 (710)
T ss_dssp SS------------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-------------EE
T ss_pred CC------------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC-------------eE
Confidence 21 23333 4889998777642 14799999986321 234444443210 01
Q ss_pred eeEEEcCCCCEEEEeeCCCc--EEEEeCCCCceeeeeeccCCCceeEEEEcCCCC
Q 043890 399 FECCLSGDGLRVATGSYSNL--FRVFGCAPGSTEATTLEASKNPMRRQVQTPSRP 451 (509)
Q Consensus 399 ~~~~~s~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 451 (509)
..+.|++++.++++...|+. |++|++.+|+.+. .+..+.+.+..+.++|++.
T Consensus 339 ~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~-~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLK-IFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEE-EECCCSSEEEEEECCTTCS
T ss_pred EEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEE-ecCCCCceEEEEecCCCCC
Confidence 26888888888888888884 6667776777665 6666666666666666543
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=5.4e-14 Score=143.22 Aligned_cols=249 Identities=10% Similarity=-0.007 Sum_probs=154.9
Q ss_pred cccceEEEEECCCCCeEE-----eecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 39 EVDIISAIEFDKTGDHLA-----TGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la-----~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
|...+..++|||||++|| .|+.+..|++||+.+++. .. ..+...
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~-----------------------~~--~~~~~~------ 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW-----------------------SK--VDVIEG------ 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB-----------------------CS--SCCBSC------
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC-----------------------cC--CcccCc------
Confidence 556799999999999999 566668999999998875 10 001000
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCe-------------EEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKT-------------IKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVS 180 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (509)
.....+.| +|||+.|+.++.|.. |++|++.++......
T Consensus 168 ----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l----------------------- 218 (695)
T 2bkl_A 168 ----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV----------------------- 218 (695)
T ss_dssp ----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE-----------------------
T ss_pred ----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE-----------------------
Confidence 11367899 999999999988765 888887765421100
Q ss_pred CCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeee-ecccccCeEEEEECCCCCEEEEE-cCC----eEE
Q 043890 181 PKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVY-AHAHDYHINSISNNSDGETFISA-DDL----RIN 254 (509)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~dg----~i~ 254 (509)
.+ ...+...+..+.|+|+|++|+.. .++ .|+
T Consensus 219 -------------------------------------------v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 219 -------------------------------------------VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp -------------------------------------------EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred -------------------------------------------EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 00 12344567889999999998876 544 566
Q ss_pred EEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE---cCCeEEEEECCCCcccCCceeeeccccCCCCc
Q 043890 255 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDLRQSALCDSHAILFEEQEAPGSR 331 (509)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
+|+..+++ .. .+..+...+....+ +++ .+++.+. .++.|.+||+.++... ....+..+.
T Consensus 256 ~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~----- 317 (695)
T 2bkl_A 256 WKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIVPED----- 317 (695)
T ss_dssp EECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEECCC-----
T ss_pred EEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEecCC-----
Confidence 66544332 21 22334445556666 677 5444443 2578999999776410 011221111
Q ss_pred cccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeec-ccccccccccccCCCccceeeEEEcCCCCE
Q 043890 332 SFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGLR 409 (509)
Q Consensus 332 ~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 409 (509)
....+..++|+ ++.++++.. ++..+||.+...+.....+..+ ...+ ..+.++|+++.
T Consensus 318 -----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~ 376 (695)
T 2bkl_A 318 -----SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDD 376 (695)
T ss_dssp -----SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSE
T ss_pred -----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCE
Confidence 01457888888 666777664 5777777655324444444433 2221 26778899987
Q ss_pred EEEe----eCCCcEEEEeCCCCce
Q 043890 410 VATG----SYSNLFRVFGCAPGST 429 (509)
Q Consensus 410 l~~~----~~dg~i~iw~~~~~~~ 429 (509)
|+.. ...++|++||+.+++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 7733 3457899999998764
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=1.3e-14 Score=137.40 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=106.2
Q ss_pred EEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEE-------------------EEEeCCCCcEE
Q 043890 236 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-------------------AEFHPTHCNML 295 (509)
Q Consensus 236 i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------l~~~~~~~~~l 295 (509)
+.|+|+|+.|+.. .++.|++||+.+++.. .+. ..+...... +.|+|++ +.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~~~-------~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~ 156 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQ-VIY-------TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWE 156 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEE-EEE-------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcE-EEE-------ecccccCCCCCEEEeccCCccccccccccccCCCC-cce
Confidence 6799999999888 7789999999876532 111 111111111 3456776 544
Q ss_pred EEE-----EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec-CCCEEEEecC-------CeEE
Q 043890 296 AYS-----SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK-DGRHILSRDY-------MTLK 362 (509)
Q Consensus 296 ~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-------~~i~ 362 (509)
+.. ..+..|.+||+.+++. ..+... ...+..+.|+| +++.|+...+ ..|.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~-----~~~~~~------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGEL-----EVIHQD------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW 219 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCE-----EEEEEE------------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred eeeeeccCCCcceEEEEECCCCcE-----EeeccC------------CcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence 443 3566899999988763 222211 24688999999 7887766432 3688
Q ss_pred EEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCceeeeeeccC
Q 043890 363 LWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 363 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~ 437 (509)
+||+.. .. ...+..+... ..+..+.|+|||++|+.++.+ +.|++||+.+++... .....
T Consensus 220 ~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~ 283 (396)
T 3c5m_A 220 LVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP 283 (396)
T ss_dssp EEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC
T ss_pred EEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC
Confidence 888864 33 2222222100 012268999999988877654 449999999886543 22211
Q ss_pred CCceeEEEEcC-CCCC
Q 043890 438 KNPMRRQVQTP-SRPS 452 (509)
Q Consensus 438 ~~~v~~~~~s~-~~~~ 452 (509)
. .. +.|+| ++..
T Consensus 284 -~-~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 284 -P-CS-HLMSNFDGSL 296 (396)
T ss_dssp -S-EE-EEEECSSSSE
T ss_pred -C-CC-CCccCCCCce
Confidence 1 22 88888 7764
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=2.5e-12 Score=125.80 Aligned_cols=318 Identities=12% Similarity=0.033 Sum_probs=185.4
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcc--CCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhh
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERT--DTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIE 117 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 117 (509)
...+..+.|+|||++|++++.++.|.+||+. +.+. ...+...
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----------------------v~~i~~G------------- 239 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----------------------VAEIKIG------------- 239 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------------------EEEEECC-------------
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------------------eEEEecC-------------
Confidence 3466799999999999999999999999995 4443 2333222
Q ss_pred ccceeeEEEEc----CCCceEEEeeC-CCeEEEEeccchhhhhhhccCCCCC---cccCCCCcccCCCCccCCccccCCC
Q 043890 118 EKINKIRWCQT----ANGALFLLSTN-DKTIKFWKVQEKKVKKIADMNVDPS---KAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 118 ~~v~~l~~~~~----~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
.....+.| + |||++++++.. +++|.|+|..+.+.+.........+ .+.+..++ ..+..++++.
T Consensus 240 ~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv-------a~i~~s~~~~ 310 (567)
T 1qks_A 240 SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV-------AAILASHYRP 310 (567)
T ss_dssp SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE-------EEEEECSSSS
T ss_pred CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce-------EEEEEcCCCC
Confidence 23568888 8 69998888765 6999999988876655433211000 00001010 1112222221
Q ss_pred CCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeE
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNI 267 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~ 267 (509)
.+.+.....+.|.+.|........... ........++.|+|++++|+++ .++.|.++|+.+++....
T Consensus 311 ----~~vv~~~~~g~v~~vd~~~~~~~~v~~------i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~- 379 (567)
T 1qks_A 311 ----EFIVNVKETGKILLVDYTDLNNLKTTE------ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI- 379 (567)
T ss_dssp ----EEEEEETTTTEEEEEETTCSSEEEEEE------EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-
T ss_pred ----EEEEEecCCCeEEEEecCCCccceeee------eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE-
Confidence 122222334455555544332111111 1223346688999999998776 689999999998754332
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEECCCCcc---cCCceeeeccccCCCCccccccccccEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDLRQSAL---CDSHAILFEEQEAPGSRSFFTEIIASISD 343 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (509)
+..- ....|.+.-..+ ++|++..+++++. .++.|.++|....+- .++.++.+.... ..-..
T Consensus 380 i~vg--g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g------------~g~~~ 444 (567)
T 1qks_A 380 EDTG--GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG------------GGSLF 444 (567)
T ss_dssp EECS--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------------SCCCC
T ss_pred Eecc--CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC------------CCCEE
Confidence 2110 112343222222 6887535555554 468999999987331 122234444321 22244
Q ss_pred EEEecCCCEEEEec--------CCeEEEEECCCC-----CCceEEEeecccccccccccccCCCccceeeEEEcCCCCEE
Q 043890 344 IKFAKDGRHILSRD--------YMTLKLWDINMD-----SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRV 410 (509)
Q Consensus 344 ~~~s~~~~~l~s~~--------~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 410 (509)
+..+|++++|.+.. .++|.++|+.+. ...+..+.... + ..+- +.-.++..+.|+|+|+++
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~-~----~~~~--~~~~~~~~~~~~~~G~~~ 517 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE-W----AGIT--EGQPRVVQGEFNKDGTEV 517 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH-H----HTCC--SSCCEEEEEEECTTSSEE
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccc-c----cccC--CCCcceEeeeECCCCCEE
Confidence 67899999988854 259999999863 22223332100 0 0000 000112389999999988
Q ss_pred EEee-----CCCcEEEEeCCCCceeeeeecc
Q 043890 411 ATGS-----YSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 411 ~~~~-----~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
..+. .++.|.|+|.+++++.. +++.
T Consensus 518 ~~s~~~~~~~~~~i~v~D~~t~~~~~-~i~~ 547 (567)
T 1qks_A 518 WFSVWNGKDQESALVVVDDKTLELKH-VIKD 547 (567)
T ss_dssp EEEEECCTTSCCEEEEEETTTTEEEE-EECC
T ss_pred EEEeecCCCCCCcEEEEECCCceEEE-EeCC
Confidence 7763 37999999999998877 6664
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=7.3e-13 Score=134.86 Aligned_cols=178 Identities=8% Similarity=-0.023 Sum_probs=107.0
Q ss_pred EEEEECCCCCEEEEE-cCCe-------------EEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE
Q 043890 234 NSISNNSDGETFISA-DDLR-------------INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 299 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~-~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~ 299 (509)
..++|+|||+.|+.+ .+.. |++|++.++.....++ .....+...+.++.|+|+| ++|+.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv----~~~~~~~~~~~~~~~SpDG-~~l~~~~ 245 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV----HERTGDPTTFLQSDLSRDG-KYLFVYI 245 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE----ECCCCCTTCEEEEEECTTS-CCEEEEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE----EecCCCCEEEEEEEECCCC-CEEEEEE
Confidence 467899999998887 6554 9999998765321111 1233455678899999999 7777666
Q ss_pred cCC----eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----CCeEEEEECCCCCC
Q 043890 300 SKG----SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----YMTLKLWDINMDSG 371 (509)
Q Consensus 300 ~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~ 371 (509)
.++ .|.+||..++. ...+..+. ..+....+ ++|.+++.+. ++.|.+||+.+. .
T Consensus 246 ~~~~~~~~l~~~~~~~~~-----~~~l~~~~------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~-~ 306 (695)
T 2bkl_A 246 LRGWSENDVYWKRPGEKD-----FRLLVKGV------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKP-A 306 (695)
T ss_dssp EETTTEEEEEEECTTCSS-----CEEEEECS------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBC-S
T ss_pred eCCCCceEEEEEcCCCCc-----eEEeecCC------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCC-C
Confidence 555 56666654443 23333221 34455555 5666444443 378999999763 3
Q ss_pred c--eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC-CCceeeeeeccC-CCceeEEEEc
Q 043890 372 P--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA-PGSTEATTLEAS-KNPMRRQVQT 447 (509)
Q Consensus 372 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~-~~~v~~~~~s 447 (509)
. ...+..+.... .+..++|+ ++.++++...|+..+||.++ +++.+. .+..+ .+.+..+.++
T Consensus 307 ~~~~~~l~~~~~~~-------------~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~-~l~~~~~~~v~~~~~s 371 (695)
T 2bkl_A 307 RASWKEIVPEDSSA-------------SLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR-TVQLPGVGAASNLMGL 371 (695)
T ss_dssp GGGCEEEECCCSSC-------------EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE-ECCCSSSSEECCCBSC
T ss_pred ccCCeEEecCCCCC-------------eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE-EecCCCCeEEEEeecC
Confidence 2 23333332110 01267787 77788888999988888665 355444 44443 4444455555
Q ss_pred CCC
Q 043890 448 PSR 450 (509)
Q Consensus 448 ~~~ 450 (509)
|++
T Consensus 372 ~d~ 374 (695)
T 2bkl_A 372 EDL 374 (695)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=2.9e-11 Score=109.54 Aligned_cols=241 Identities=10% Similarity=0.040 Sum_probs=160.0
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEe-eeccCCcchhhccchhhhc
Q 043890 40 VDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKT-EFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 40 ~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~ 118 (509)
...+.+++++++|++.++...++.|.+||.. ++. .. .+..+. .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------------------~~~~~~~~~------------~ 62 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------------------KEFEVPTPD------------A 62 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------------------EEEECSSTT------------C
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------------------EEEECCCCC------------C
Confidence 4677899999999988887778899999977 433 11 111111 4
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.+.++.+ +++++++++...++.|..||.. ++.... .
T Consensus 63 ~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~---------------------------------------- 98 (300)
T 2qc5_A 63 KVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-P---------------------------------------- 98 (300)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E----------------------------------------
T ss_pred cceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-c----------------------------------------
Confidence 5788888 8899877776667889999876 432110 0
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
.......+.++++.++++++++. .++.|..+|.. ++.. .. .+..
T Consensus 99 ---------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~------~~~~ 143 (300)
T 2qc5_A 99 ---------------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY------DLPN 143 (300)
T ss_dssp ---------------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE------ECSS
T ss_pred ---------------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec------cCCC
Confidence 01122447789999999988887 68899999887 3322 11 1222
Q ss_pred CccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 278 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 278 ~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
....+.++++.+++ +++++...++.|..||. .++. ..+.... ....+..++++++|.+.++..
T Consensus 144 ~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~~----------~~~~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 144 KGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKL-----EEYPLPT----------NAAAPVGITSGNDGALWFVEI 206 (300)
T ss_dssp TTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-----EEEECSS----------TTCCEEEEEECTTSSEEEEET
T ss_pred CCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcE-----EEeeCCC----------CCCCcceEEECCCCCEEEEcc
Confidence 34568899999998 76666656789999998 4442 2222111 114678999999998777765
Q ss_pred C-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 358 Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 358 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
. +.|.+||.. +... .+...... ..+..++++++|++.++...++.|..|+. +++.
T Consensus 207 ~~~~i~~~~~~--g~~~-~~~~~~~~-------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 207 MGNKIGRITTT--GEIS-EYDIPTPN-------------ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp TTTEEEEECTT--CCEE-EEECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred CCCEEEEEcCC--CcEE-EEECCCCC-------------CCceEEEECCCCCEEEeccCCCeEEEECC-CCcE
Confidence 4 789999983 2322 22111100 11238899999997776666789999998 4543
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=4.7e-13 Score=124.31 Aligned_cols=150 Identities=9% Similarity=0.032 Sum_probs=89.0
Q ss_pred CeEEEEECCCCCEEEEE-cC------C-eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC--
Q 043890 232 HINSISNNSDGETFISA-DD------L-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 301 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~d------g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-- 301 (509)
.+..+.|+|+| +++++ .+ . ...+|.++ ...... +..+ ..+..+ +|+| +.|+.++.+
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~--------l~~~-~~~~~~--spdg-~~l~~~~~~~~ 237 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEK--------MFEK-VSFYAV--DSDG-ERILLYGKPEK 237 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEE--------EEEE-ESEEEE--EECS-SCEEEEECCSS
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEE--------eccC-cceeeE--CCCC-CEEEEEEcccc
Confidence 57789999999 77766 43 2 44555555 332222 2223 444444 9998 777766643
Q ss_pred ------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEE-EEEecCCCEEEEec-CCeEEEEECCCCCCce
Q 043890 302 ------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISD-IKFAKDGRHILSRD-YMTLKLWDINMDSGPV 373 (509)
Q Consensus 302 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~ 373 (509)
..|.+|| +++. ..+. .++...+.. +.|+ |+ +++++. ++.++|| +.+ ++.
T Consensus 238 ~~~~~~~~l~~~d--~~~~-----~~l~-----------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~- 294 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKEV-----MGIL-----------DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEI- 294 (347)
T ss_dssp SCCCSSCEEEEEC--SSCE-----EESS-----------TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSE-
T ss_pred CCccccceEEEEC--CCce-----Eecc-----------ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-Cce-
Confidence 3677887 3331 2111 112246775 8999 88 777765 5899999 873 443
Q ss_pred EEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcE-EEEeCCCCceeeeeeccCC
Q 043890 374 ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLF-RVFGCAPGSTEATTLEASK 438 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~ 438 (509)
..+..+...+ .+++|+| .++++++.++.. .||.++ ++ .. .+..|.
T Consensus 295 ~~~~~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~-~lt~~n 340 (347)
T 2gop_A 295 KPIAKGRHWI---------------MGFDVDE--IVVYLKETATRLRELFTWD-GE-EK-QLTDYN 340 (347)
T ss_dssp EEEECSSSEE---------------EEEEESS--SEEEEEECSSSCCEEEEES-SS-EE-ECCCTT
T ss_pred EEEecCCCeE---------------EeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EE-Eecccc
Confidence 3333333322 2789999 677777776654 677666 54 33 455444
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=4.3e-12 Score=112.96 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=163.8
Q ss_pred CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC
Q 043890 51 TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN 130 (509)
Q Consensus 51 ~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 130 (509)
.+++|++++.++.|++||..+++. +..+..+.. ..++++.+ +|+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~--~pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAA--TKA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEE--CTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEE--CCC
Confidence 468999999999999999988877 566665431 24788888 999
Q ss_pred CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccc
Q 043890 131 GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTV 210 (509)
Q Consensus 131 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 210 (509)
|++|+ +.++.|..||. +++.+....
T Consensus 48 G~ilv--s~~~~V~~~d~-~G~~~W~~~---------------------------------------------------- 72 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DGRELWNIA---------------------------------------------------- 72 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TSCEEEEEE----------------------------------------------------
T ss_pred CCEEE--eCCCCEEEECC-CCCEEEEEc----------------------------------------------------
Confidence 99888 45778999998 665332211
Q ss_pred cccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c-CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe
Q 043890 211 TSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 288 (509)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 288 (509)
......+.++.+.++|+++++. . ++.|..+|. +++.+.++ .+.. ....+......+.+.
T Consensus 73 ----------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~-~~~~-~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 73 ----------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKT-EFET-GIERPHAQFRQINKN 133 (276)
T ss_dssp ----------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEE-EECC-SCSSGGGSCSCCEEC
T ss_pred ----------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEE-eccC-CCCcccccccCceEC
Confidence 1112346788899999999987 5 777777775 34433332 1111 111222345566788
Q ss_pred CCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECC
Q 043890 289 PTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDIN 367 (509)
Q Consensus 289 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~ 367 (509)
+++ +++++...++.|..||.. ++. +..+... ..+.++.+.++|.+++++.+ +.|..+|..
T Consensus 134 ~~G-~~lv~~~~~~~v~~~d~~-G~~----~w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 134 KKG-NYLVPLFATSEVREIAPN-GQL----LNSVKLS-------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp TTS-CEEEEETTTTEEEEECTT-SCE----EEEEECS-------------SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCC-CEEEEecCCCEEEEECCC-CCE----EEEEECC-------------CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 998 899999999999999998 764 3334332 23456778899999998765 789999998
Q ss_pred CCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC--------CcEEEEeCC-CCceeeeeeccC
Q 043890 368 MDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS--------NLFRVFGCA-PGSTEATTLEAS 437 (509)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~-~~~~~~~~~~~~ 437 (509)
+ ++.+..+......- ..+..+..++..++|.++++.... +..++++++ +|+.+- .+..+
T Consensus 195 t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W-~~~~~ 262 (276)
T 3no2_A 195 S-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW-QLNDK 262 (276)
T ss_dssp T-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE-EECCT
T ss_pred C-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEE-EecCc
Confidence 6 67777776432110 011223377888999988876421 234566663 566554 44443
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=4.1e-12 Score=116.65 Aligned_cols=160 Identities=13% Similarity=-0.024 Sum_probs=104.8
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cCCeEEEEE
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 308 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~dg~i~vwd 308 (509)
.....++++++++++++. .++.|.+||..+.+....+ ... ...+.......+++ .++ +++++.. .++.|.++|
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i-~~g--~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI-ECP--DMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKID 158 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE-ECT--TCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEE
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE-EcC--CccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEE
Confidence 346788898888666666 6899999999876543222 110 10111124456677 343 4555443 489999999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C----------CeEEEEECCCCCCceEEEe
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y----------MTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~----------~~i~iwd~~~~~~~~~~~~ 377 (509)
+.+++. ...+... .....++++|+|++++++. + +.|.++|..+ .+....+.
T Consensus 159 ~~t~~~----~~~i~~g-------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~ 220 (328)
T 3dsm_A 159 TETDKV----VDELTIG-------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFK 220 (328)
T ss_dssp TTTTEE----EEEEECS-------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEE
T ss_pred CCCCeE----EEEEEcC-------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEEe
Confidence 998874 2333322 2346788999999877753 2 6899999986 45555554
Q ss_pred eccc-ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 378 VHEY-LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 378 ~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
...+ .. ..++|+|+++.|+++.. .|.+||..+++..
T Consensus 221 ~~~g~~p---------------~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 221 FKLGDWP---------------SEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp CCTTCCC---------------EEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred cCCCCCc---------------eeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 3211 11 28999999999887765 8999999887654
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=1.2e-11 Score=110.25 Aligned_cols=192 Identities=6% Similarity=0.002 Sum_probs=124.3
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
.+.+++++++++++++..++.|.+||....... . ........+..+++++++ +++++...++.|.+||..+
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~-------~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-V-------LPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-E-------CCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTC
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-e-------eecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCC
Confidence 366789999998555556789999998754321 1 011223568899999998 7777777788999997655
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLY 390 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (509)
... ...... ....+.+++++++|+++++.. ++.|.+||... .........+..
T Consensus 139 ~~~-----~~~~~~-----------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~--------- 192 (270)
T 1rwi_B 139 KTQ-----TVLPFT-----------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDIT--------- 192 (270)
T ss_dssp CSC-----EECCCC-----------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCSSCC---------
T ss_pred cee-----Eeeccc-----------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeecccCCC---------
Confidence 431 111000 013567899999999777764 48999999875 322211111101
Q ss_pred cCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCc
Q 043890 391 ENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPG 470 (509)
Q Consensus 391 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 470 (509)
....++++++|.++++...++.|.+|+........ ....+
T Consensus 193 ------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~--------------------------------- 232 (270)
T 1rwi_B 193 ------APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTG--------------------------------- 232 (270)
T ss_dssp ------SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCS---------------------------------
T ss_pred ------CceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCC---------------------------------
Confidence 12289999999877777778899999987543221 00000
Q ss_pred ccCCCcccccccceEEEEEcCCCcEEEEEec-CceEEEe
Q 043890 471 VDTNGNSFDFTTKLLHLAWHPTENSIACAAA-NSLYMYY 508 (509)
Q Consensus 471 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-~~i~v~~ 508 (509)
...+..++++|+++++++... +.|++|.
T Consensus 233 ----------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 233 ----------LNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp ----------CSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ----------CCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 134688999999986666554 7888875
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=2.2e-12 Score=132.34 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=147.8
Q ss_pred cccceEEEEECCCCCeEEeecCC-----CeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRG-----GRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~d-----g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
|...+..++|||||++||.+..+ ..|++||+.+++. .. ...+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~-----------------------~~-~~~~~-------- 208 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP-----------------------LA-DELKW-------- 208 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE-----------------------EE-EEEEE--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----------------------CC-ccCCC--------
Confidence 34478899999999999987543 4699999998875 11 11111
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCe--------------EEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKT--------------IKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNV 179 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (509)
..+..+.| +|| +.|+.++.|+. |.+|++.++.....
T Consensus 209 ----~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~----------------------- 258 (741)
T 1yr2_A 209 ----VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ----------------------- 258 (741)
T ss_dssp ----EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE-----------------------
T ss_pred ----ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE-----------------------
Confidence 22468899 999 89988887654 55565544321100
Q ss_pred cCCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeee-ecccccCeEEEEECCCCCEEEEE-cCC-----e
Q 043890 180 SPKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVY-AHAHDYHINSISNNSDGETFISA-DDL-----R 252 (509)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~dg-----~ 252 (509)
..+ ...+...+..+.|+|+|++|+.. .++ .
T Consensus 259 -------------------------------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 259 -------------------------------------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp -------------------------------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred -------------------------------------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 001 02223347789999999988876 443 8
Q ss_pred EEEEEccCCCce-eeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc----CCeEEEEECCCCcccCCceeeeccccC
Q 043890 253 INLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDLRQSALCDSHAILFEEQEA 327 (509)
Q Consensus 253 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~ 327 (509)
|++||+.++... .. .+..+...+.... +|++ ..|+..+. ++.|.+||+.++. .....+..+
T Consensus 296 l~~~d~~~~~~~~~~-------~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~~l~~~-- 361 (741)
T 1yr2_A 296 VHVARVTNGKIGPVT-------ALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGST---PRFDTVVPE-- 361 (741)
T ss_dssp EEEEEEETTEECCCE-------EEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSS---CEEEEEECC--
T ss_pred EEEEECCCCCCcccE-------EecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCc---cccEEEecC--
Confidence 999999875211 11 1222333344443 4787 66666665 3459999987742 001222111
Q ss_pred CCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeec-ccccccccccccCCCccceeeEEEcC
Q 043890 328 PGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 328 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
+...+..+.++ ++.++++.. ++..+||.+...+.....+..+ ... +..+.++|
T Consensus 362 ---------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~---------------v~~~~~s~ 416 (741)
T 1yr2_A 362 ---------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS---------------ASGLSGRP 416 (741)
T ss_dssp ---------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE---------------EEEEECCB
T ss_pred ---------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE---------------EEEeecCC
Confidence 12346677887 555666654 5666666544224444444432 221 22688899
Q ss_pred CCCEEEEe----eCCCcEEEEeCCCCce
Q 043890 406 DGLRVATG----SYSNLFRVFGCAPGST 429 (509)
Q Consensus 406 ~~~~l~~~----~~dg~i~iw~~~~~~~ 429 (509)
+++.|+.. ...++|++||+.+++.
T Consensus 417 d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 417 GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 98866633 3457999999988763
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=1e-11 Score=113.84 Aligned_cols=250 Identities=12% Similarity=0.072 Sum_probs=151.8
Q ss_pred EEECCCCCeEEeecC-----CCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 46 IEFDKTGDHLATGDR-----GGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 46 v~~s~~~~~la~g~~-----dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
....|+++.+++... ++.|.+.|..+.+. +..+.... .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-----------------------~~~I~vG~------------~P- 81 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------LP- 81 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC-
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-----------------------EEEEECCC------------CC-
Confidence 455789988888765 57999999988876 44443222 22
Q ss_pred eeeEEEEcCCCceEEEee----------CCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 121 NKIRWCQTANGALFLLST----------NDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
. +.+ +|||++++++. .++.|.+||..+.+...........
T Consensus 82 ~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~--------------------------- 131 (386)
T 3sjl_D 82 N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP--------------------------- 131 (386)
T ss_dssp E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC---------------------------
T ss_pred c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc---------------------------
Confidence 3 888 99999988775 3678999999887644332110000
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeE
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNI 267 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~ 267 (509)
+ .........+.++|+|++++++ . ++.|.++|+.+.+...++
T Consensus 132 --------------------------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 132 --------------------------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp --------------------------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred --------------------------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 0 0001124468899999998877 3 689999999987654432
Q ss_pred eeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC-CcccCCceeeeccccCCCCccccccccccE-EEEE
Q 043890 268 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ-SALCDSHAILFEEQEAPGSRSFFTEIIASI-SDIK 345 (509)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 345 (509)
...+ . .. ..|.+.+.+++.+.||.+.+.++.. ++.. ........... ..+ ....
T Consensus 177 ------~v~g----~-~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~----~~~~~~~~~~~--------~~~~~~~~ 232 (386)
T 3sjl_D 177 ------DVPD----C-YH-IFPTAPDTFFMHCRDGSLAKVAFGTEGTPE----ITHTEVFHPED--------EFLINHPA 232 (386)
T ss_dssp ------ECCS----E-EE-EEEEETTEEEEEETTSCEEEEECCSSSCCE----EEECCCCSCTT--------SCBCSCCE
T ss_pred ------ECCC----c-ce-eecCCCceeEEECCCCCEEEEECCCCCeEE----Eeecceecccc--------ccccccce
Confidence 1111 1 12 2344446777888999999999976 4431 11000000000 111 1235
Q ss_pred Ee-cCCCEEEEecCCeEEEEECCCCCC-ceEEEee-c-----ccccccccccccCCCccceeeEEEcCCCCEEEEeeC--
Q 043890 346 FA-KDGRHILSRDYMTLKLWDINMDSG-PVATFQV-H-----EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-- 415 (509)
Q Consensus 346 ~s-~~~~~l~s~~~~~i~iwd~~~~~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 415 (509)
|. ++|++++...++.|++.|+..... ....+.. . .++.. .... .++++++++.|+....
T Consensus 233 ~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--------~g~q---~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 233 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--------GGWQ---QVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--------CSSS---CEEEETTTTEEEEEEEEC
T ss_pred eEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccC--------CCcc---eeeECCCCCeEEEEeccc
Confidence 64 688777766669999999975221 1222210 0 00000 0111 5788999998887643
Q ss_pred --------CCcEEEEeCCCCceee
Q 043890 416 --------SNLFRVFGCAPGSTEA 431 (509)
Q Consensus 416 --------dg~i~iw~~~~~~~~~ 431 (509)
.+.|.++|+.+++.+.
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEE
T ss_pred cccccCCCCCEEEEEECCCCeEEE
Confidence 2579999999998887
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.1e-11 Score=113.28 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=123.3
Q ss_pred cccCeEEEEECCC-CCEEEEEcCCeEEEEEccCCCceeeE-eeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-----
Q 043890 229 HDYHINSISNNSD-GETFISADDLRINLWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----- 301 (509)
Q Consensus 229 ~~~~v~~i~~~~~-~~~l~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d----- 301 (509)
+...+.+++++++ ++++++...+.|.+||.+ ++.. .+ .. .........+.++++++++ +++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~-~~~~~---~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~ 142 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFE-EIAKK---DSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPA 142 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEE-ECCSB---CTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTS
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEE-EEEec---cCCCccccCCcCEEECCCC-CEEEEecCcccccc
Confidence 3355889999999 766666644478899987 4421 11 10 0001123457899999998 777766554
Q ss_pred ----------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe----cCCCEEEEe-c-CCeEEEEE
Q 043890 302 ----------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA----KDGRHILSR-D-YMTLKLWD 365 (509)
Q Consensus 302 ----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~s~-~-~~~i~iwd 365 (509)
+.|..||.. ++. ..+... ......++|+ |+++.|+.+ . ++.|.+||
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~~------------~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~ 204 (314)
T 1pjx_A 143 DYTRSMQEKFGSIYCFTTD-GQM-----IQVDTA------------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD 204 (314)
T ss_dssp CCCBTTSSSCEEEEEECTT-SCE-----EEEEEE------------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred cccccccCCCCeEEEECCC-CCE-----EEeccC------------CCCcceEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence 567777765 432 211111 1346789999 999766554 3 48999999
Q ss_pred CCCCCCce--EEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 366 INMDSGPV--ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 366 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
+...+... ..+....... ......++++++|+++++...++.|.+||.++++.+. .+..+.
T Consensus 205 ~~~~g~~~~~~~~~~~~~~~-----------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~-~~~~~~----- 267 (314)
T 1pjx_A 205 IKGPAKIENKKVWGHIPGTH-----------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM-RIRCPF----- 267 (314)
T ss_dssp EEETTEEEEEEEEEECCCCS-----------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE-EEECSS-----
T ss_pred CCCCCccccceEEEECCCCC-----------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE-EEeCCC-----
Confidence 86212211 1111100000 0001278999999988888788999999988776554 333221
Q ss_pred EEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEec--CceEEEe
Q 043890 444 QVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA--NSLYMYY 508 (509)
Q Consensus 444 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~--~~i~v~~ 508 (509)
..+.+++|+|+++.|.+++. +.+..|+
T Consensus 268 --------------------------------------~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 268 --------------------------------------EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp --------------------------------------SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------------------------------------CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 34678888888886666655 4777775
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.3e-11 Score=112.72 Aligned_cols=243 Identities=10% Similarity=0.109 Sum_probs=153.5
Q ss_pred cceEEEEECCCCCeEEe-------ecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeec-----cCCcch
Q 043890 41 DIISAIEFDKTGDHLAT-------GDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQ-----SHEPEF 108 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~-------g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~ 108 (509)
....+++|+++|+++++ +..++.|.+||..+++. ..+. ++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------------------~~~~~~~~~~~~--- 70 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------------------TVICKPEVNGYG--- 70 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------------------EEEECCEETTEE---
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------------------EEEEecccCCCC---
Confidence 45678999999998888 67788999999876654 1111 122
Q ss_pred hhccchhhhccceeeEEEEcCC-CceEEEeeCCCeEEEEeccchhhhhh-hccCCCCCcccCCCCcccCCCCccCCcccc
Q 043890 109 DYLKSLEIEEKINKIRWCQTAN-GALFLLSTNDKTIKFWKVQEKKVKKI-ADMNVDPSKAVGNGNVASSSNNVSPKPYLA 186 (509)
Q Consensus 109 ~~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (509)
..+.++.+ +++ +++++ ++..+.|.+||.. ++.... ....
T Consensus 71 ---------~~~~~i~~--~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~-------------------------- 111 (314)
T 1pjx_A 71 ---------GIPAGCQC--DRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDS-------------------------- 111 (314)
T ss_dssp ---------CCEEEEEE--CSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCT--------------------------
T ss_pred ---------CCCceEEE--ecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccC--------------------------
Confidence 45888998 888 65444 4444478889987 542211 0000
Q ss_pred CCCCCcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC---------------
Q 043890 187 NGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD--------------- 250 (509)
Q Consensus 187 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d--------------- 250 (509)
.......+.+++++++|+++++. .+
T Consensus 112 ---------------------------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 112 ---------------------------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp ---------------------------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred ---------------------------------------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 00112347789999999888877 54
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEe----CCCCcEEEEE-EcCCeEEEEECC-CCcccCCceeeecc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTHCNMLAYS-SSKGSIRLIDLR-QSALCDSHAILFEE 324 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~l~~~-~~dg~i~vwd~~-~~~~~~~~~~~~~~ 324 (509)
+.|..|+.. ++ ... +..+......++++ |++ +.++.+ ..++.|.+||+. .++.. ....+..
T Consensus 153 ~~l~~~~~~-g~-~~~--------~~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~--~~~~~~~ 219 (314)
T 1pjx_A 153 GSIYCFTTD-GQ-MIQ--------VDTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIE--NKKVWGH 219 (314)
T ss_dssp EEEEEECTT-SC-EEE--------EEEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEE--EEEEEEE
T ss_pred CeEEEECCC-CC-EEE--------eccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCccc--cceEEEE
Confidence 566666654 32 211 11223346789999 997 555554 467899999986 33310 0111111
Q ss_pred ccCCCCcccccccc-ccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEE
Q 043890 325 QEAPGSRSFFTEII-ASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC 402 (509)
Q Consensus 325 ~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 402 (509)
+..+. ..+..++++++|++.++.. ++.|.+||..+ ++.+..+..+.... .+++
T Consensus 220 ---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~---------------~~i~ 274 (314)
T 1pjx_A 220 ---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLH 274 (314)
T ss_dssp ---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEE
T ss_pred ---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCc---------------eeEE
Confidence 11111 3577899999999888764 58999999885 45555554432222 2889
Q ss_pred EcCCCCEEE-EeeCCCcEEEEeCCC
Q 043890 403 LSGDGLRVA-TGSYSNLFRVFGCAP 426 (509)
Q Consensus 403 ~s~~~~~l~-~~~~dg~i~iw~~~~ 426 (509)
|+++++.|+ +...++.|..|++..
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999554 445678999999874
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=4.5e-12 Score=116.34 Aligned_cols=249 Identities=8% Similarity=0.043 Sum_probs=158.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
+....++++ ++++.++...++.|.+||..+++. ...+... ...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-----------------------~~~i~~~-------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-----------------------VGRITGF-------------TSP 86 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECC-------------SSE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----------------------EEEcCCC-------------CCC
Confidence 445677775 455666666678999999998876 3444321 347
Q ss_pred eeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCC
Q 043890 121 NKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPG 200 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 200 (509)
..+++ +++++.+++...++.|.+||..+++..........
T Consensus 87 ~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------------------- 126 (328)
T 3dsm_A 87 RYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------------------- 126 (328)
T ss_dssp EEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred cEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence 78888 77885555544899999999988764332110000
Q ss_pred CCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-c-CCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 201 GIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
.+.......+++ .++.++++. . ++.|.++|+++++....+ ..
T Consensus 127 --------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i------~~--- 170 (328)
T 3dsm_A 127 --------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL------TI--- 170 (328)
T ss_dssp --------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE------EC---
T ss_pred --------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE------Ec---
Confidence 001112334556 344445554 3 899999999986644322 11
Q ss_pred ccceEEEEEeCCCCcEEEEEEcC----------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
......++++|++ ++++++..+ +.|.++|..++++ ...+.... ......++|+|
T Consensus 171 g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v----~~~~~~~~-----------g~~p~~la~~~ 234 (328)
T 3dsm_A 171 GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTV----EKQFKFKL-----------GDWPSEVQLNG 234 (328)
T ss_dssp SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE----EEEEECCT-----------TCCCEEEEECT
T ss_pred CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeE----EEEEecCC-----------CCCceeEEEec
Confidence 2234578899998 766666554 7899999988764 23332211 02578999999
Q ss_pred CCCEEEEecCCeEEEEECCCCCCceE-E-EeecccccccccccccCCCccceeeEEEcC-CCCEEEEe----eCCCcEEE
Q 043890 349 DGRHILSRDYMTLKLWDINMDSGPVA-T-FQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATG----SYSNLFRV 421 (509)
Q Consensus 349 ~~~~l~s~~~~~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~i~i 421 (509)
+++.|+++.. .|.+||..+ .+... . +...... ...++++| ++.+.++. ..++.|.+
T Consensus 235 d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~~~---------------p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 235 TRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFRDTK---------------YYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp TSCEEEEESS-SEEEEETTC-SSCCSSCSBCCCSSC---------------EEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred CCCEEEEEcc-EEEEEECCC-CceeeeeeecCCCCc---------------eEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 9999888764 899999986 33321 1 1110011 12799999 55555555 56899999
Q ss_pred EeCCCCceeeeeeccC
Q 043890 422 FGCAPGSTEATTLEAS 437 (509)
Q Consensus 422 w~~~~~~~~~~~~~~~ 437 (509)
||.+ ++.+. .+...
T Consensus 298 ~d~~-g~~~~-~i~~G 311 (328)
T 3dsm_A 298 YSPQ-GKLID-EFYVG 311 (328)
T ss_dssp ECTT-CCEEE-EEEEE
T ss_pred ECCC-CCEEE-EEEec
Confidence 9998 88877 66543
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=7.9e-12 Score=128.18 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=103.8
Q ss_pred EEEEECCCCCEEEEE-cCC--------------eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEE
Q 043890 234 NSISNNSDGETFISA-DDL--------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 298 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~-~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~ 298 (509)
..++|+|| +.|+.+ .++ .|++|++.++.....++ .....+...+..+.|+||| ++|+..
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv----~~~~~~~~~~~~~~~SpDG-~~l~~~ 285 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV----FATPELPKRGHGASVSSDG-RWVVIT 285 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE----ECCTTCTTCEEEEEECTTS-CEEEEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE----eccCCCCeEEEEEEECCCC-CEEEEE
Confidence 46789999 887776 433 38899987654211111 1222333458899999999 777776
Q ss_pred EcCC-----eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-----CCeEEEEECCC
Q 043890 299 SSKG-----SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-----YMTLKLWDINM 368 (509)
Q Consensus 299 ~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-----~~~i~iwd~~~ 368 (509)
+.++ .|.+||+.++... ....+..+. ..+... ++|+|+.|+..+ .+.|.+||+.+
T Consensus 286 ~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~------------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 286 SSEGTDPVNTVHVARVTNGKIG--PVTALIPDL------------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EECTTCSCCEEEEEEEETTEEC--CCEEEECSS------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEccCCCcceEEEEECCCCCCc--ccEEecCCC------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 6543 8999999876210 012222221 223333 348888777653 25699999875
Q ss_pred CCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC-CCceeeeeeccC-CCceeEEEE
Q 043890 369 DSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA-PGSTEATTLEAS-KNPMRRQVQ 446 (509)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~-~~~v~~~~~ 446 (509)
.......+..+.... +..+.|+ ++.++++...|+..+||.++ ++..+. .+..+ .+.+..+.+
T Consensus 351 ~~~~~~~l~~~~~~~--------------l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~-~l~~~~~~~v~~~~~ 414 (741)
T 1yr2_A 351 STPRFDTVVPESKDN--------------LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG-AVSLPGIGSASGLSG 414 (741)
T ss_dssp SSCEEEEEECCCSSE--------------EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE-ECBCSSSCEEEEEEC
T ss_pred CccccEEEecCCCCe--------------EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee-eccCCCCeEEEEeec
Confidence 211223332222110 1156776 56778888889987777654 355444 44432 344555555
Q ss_pred cCCCC
Q 043890 447 TPSRP 451 (509)
Q Consensus 447 s~~~~ 451 (509)
+|+++
T Consensus 415 s~d~~ 419 (741)
T 1yr2_A 415 RPGDR 419 (741)
T ss_dssp CBTCS
T ss_pred CCCCC
Confidence 55443
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=3.3e-10 Score=105.34 Aligned_cols=173 Identities=8% Similarity=-0.068 Sum_probs=96.9
Q ss_pred eEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 233 INSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
...+.|+|+|++|+++ . ++.|.++| .+++....+ +. ... ++.+.|++.+.+++.+.||.+.++|.
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~-------i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL-------LS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE-------cC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 4478999999999887 3 58899999 876543220 11 111 24556776567778888999999999
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCE-EEEecCCeEEEEECCCCC-CceEEEeeccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRH-ILSRDYMTLKLWDINMDS-GPVATFQVHEYLRPKLC 387 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 387 (509)
+++.. ....... .+.+...-.....+.+++.. ++....+.+.+.|+.... ..+..+......... .
T Consensus 195 -~g~~~----~~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~-~ 262 (373)
T 2mad_H 195 -AGGAA----GAGLVGA------MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA-D 262 (373)
T ss_pred -CCcEE----EEEeccc------cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc-c
Confidence 66532 1111000 00000011223456666554 344445899999997522 112222111100000 0
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeC----------CCcEEEEeCCCCceeeeee
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSY----------SNLFRVFGCAPGSTEATTL 434 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~ 434 (509)
...-.....+.++|+++.|+.+.. ++.|.++|..+++.+. ++
T Consensus 263 ----~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~-~i 314 (373)
T 2mad_H 263 ----TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-QI 314 (373)
T ss_pred ----ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE-EE
Confidence 000000113788999998887653 3579999999988877 44
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=3.8e-10 Score=102.06 Aligned_cols=221 Identities=10% Similarity=0.041 Sum_probs=146.7
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..+.++.+ +++|+.+++...++.|.+||.. ++.....
T Consensus 15 ~~~~~i~~--d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~---------------------------------------- 51 (299)
T 2z2n_A 15 TGPYGITV--SDKGKVWITQHKANMISCINLD-GKITEYP---------------------------------------- 51 (299)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-CCEEEEE----------------------------------------
T ss_pred CCccceEE--CCCCCEEEEecCCCcEEEEcCC-CCeEEec----------------------------------------
Confidence 45889999 8999877766668899999987 4321110
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
...+...+.++++++++.++++. .++.|..||.. ++ . ..+ .+.
T Consensus 52 ----------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~-~~~-----~~~ 95 (299)
T 2z2n_A 52 ----------------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-I-KEY-----TLP 95 (299)
T ss_dssp ----------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-EEE-----ECS
T ss_pred ----------------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-E-EEE-----eCC
Confidence 01123457889999999988888 68899999976 22 1 111 112
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.....+.++++.+++ +++++...++.|.+||. +++. ..+.... ....+..++++++|++.++.
T Consensus 96 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-----~~~~~~~----------~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 96 NPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKI-----REYELPN----------KGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp STTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE-----EEEECSS----------TTCCEEEEEECTTSCEEEEE
T ss_pred CcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCE-----EEecCCC----------CCCCCceEEEcCCCCEEEEe
Confidence 234578899999998 77777767889999998 4442 2221110 11468899999999888876
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
. .+.|..||. + ++.. .+...... ..+..++++++|++.++...++.|.+|+. +++.....+.
T Consensus 159 ~~~~~i~~~~~-~-g~~~-~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 221 (299)
T 2z2n_A 159 NQNNAIGRITE-S-GDIT-EFKIPTPA-------------SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIP 221 (299)
T ss_dssp TTTTEEEEECT-T-CCEE-EEECSSTT-------------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred CCCCEEEEEcC-C-CcEE-EeeCCCCC-------------CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECC
Confidence 5 489999998 4 3332 22111110 11237899999998777767889999999 6665432234
Q ss_pred cCCCceeEEEEcCCCC
Q 043890 436 ASKNPMRRQVQTPSRP 451 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~ 451 (509)
.+...+..+++.+++.
T Consensus 222 ~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 222 TPNARPHAITAGAGID 237 (299)
T ss_dssp STTCCEEEEEECSTTC
T ss_pred CCCCCceeEEECCCCC
Confidence 4445667777776654
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=5.3e-11 Score=105.91 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=116.8
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CCeEEEEECC
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLR 310 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~ 310 (509)
.+.++.+.|+|++++ +.++.|+.||. +++.+.++. . .....+.++.+.+++ +++++.+. ++.|..+|.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~------~-~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~- 106 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIA------A-PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM- 106 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEE------C-CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEc------C-CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence 467889999999988 54667999998 666554321 1 123467889999998 88888877 788888886
Q ss_pred CCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeeccccccccccc
Q 043890 311 QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDL 389 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 389 (509)
.++. +..+..... ...+......+++.++|.++++.. ++.|.+||.. ++.+..+......
T Consensus 107 ~Gk~----l~~~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~------- 167 (276)
T 3no2_A 107 KGEV----LSKTEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP------- 167 (276)
T ss_dssp TSCE----EEEEEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC-------
T ss_pred CCCE----EEEEeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc-------
Confidence 4543 233322110 001112345567899999999876 4999999987 5777777654221
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 390 YENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 390 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
+.+.+.++|++++++..++.|..+|..+|+.+- .+..
T Consensus 168 ---------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w-~~~~ 204 (276)
T 3no2_A 168 ---------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR-RVNA 204 (276)
T ss_dssp ---------CEEEECTTSCEEEECBTTSEEEEECTTTCCEEE-EEEG
T ss_pred ---------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE-EecC
Confidence 167788999999999888899999999999887 6553
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.40 E-value=1.5e-09 Score=100.99 Aligned_cols=256 Identities=10% Similarity=0.033 Sum_probs=152.6
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccC-Ccchhhccc
Q 043890 45 AIEFDKTGDHLATGD----------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSH-EPEFDYLKS 113 (509)
Q Consensus 45 ~v~~s~~~~~la~g~----------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 113 (509)
.++|+|||++|+++. .++.|.+||..+.+. ...+.-. ...+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-----------------------~~~i~~~~~~~~----- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF----- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-----------------------EEEEECCCcccc-----
Confidence 899999999999886 367899999987665 2221110 0000
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeC--CCeEEEEeccchhhhhh-hccCCCCCcccCCCCcccCCCCccCCccccCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTN--DKTIKFWKVQEKKVKKI-ADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGS 190 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (509)
.....-..+.| +|||++|+++.. ++.|.++| .+++.... ..
T Consensus 122 -~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-------------------------------- 165 (373)
T 2mad_H 122 -DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-------------------------------- 165 (373)
T ss_pred -ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--------------------------------
Confidence 00012457888 999999998874 57899999 87753211 10
Q ss_pred CcceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCC-EEEEE-cCCeEEEEEccCCCceeeEe
Q 043890 191 PSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~dg~i~iwd~~~~~~~~~~~ 268 (509)
. .. ++.+.|++. .+++. .||.+.++|. +++.....
T Consensus 166 ------------------------------------~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~- 202 (373)
T 2mad_H 166 ------------------------------------S--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG- 202 (373)
T ss_pred ------------------------------------C--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE-
Confidence 0 00 133445543 34444 7899999999 66543211
Q ss_pred eccCCccCCCccc-eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 269 DVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 269 ~~~~~~~~~~~~~-i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
...+ .+ ....+ .....+.+++..++++ +..+.+.+.|+...... ....++....... ...-.......+.++
T Consensus 203 ~~~~-~~-~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~--~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 203 LVGA-ML-TAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGAT--NKAPIDALSGGRK--ADTWRPGGWQQVAYL 275 (373)
T ss_pred eccc-cc-cCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcce--EeeeeeecCCccc--ccceecCceEeEEEC
Confidence 0000 01 11122 2335667776344444 47789999999765321 0112211100000 000011234557899
Q ss_pred cCCCEEEEec-----------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEee-
Q 043890 348 KDGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATGS- 414 (509)
Q Consensus 348 ~~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~- 414 (509)
|+++.++.+. .+.|.++|+.+ .+.+..+...... . .+.|+|||+ +|+++.
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p-~---------------~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV-D---------------AISVAQDGGPDLYALSA 338 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc-C---------------eEEECCCCCeEEEEEcC
Confidence 9998777642 25799999997 6777777543321 1 899999999 777777
Q ss_pred CCCcEEEEeCCCCceee
Q 043890 415 YSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 415 ~dg~i~iw~~~~~~~~~ 431 (509)
.++.|.+||+.+++.+.
T Consensus 339 ~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CCCeEEEEECCCCCEEe
Confidence 48999999999999887
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=2.4e-10 Score=103.25 Aligned_cols=179 Identities=9% Similarity=0.080 Sum_probs=109.6
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC---------
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 301 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d--------- 301 (509)
..+.+++++++|+++++. ++.|.+||.++++.. .+... ........+..++++|+| +++++...+
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~-~~~~~---~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAV-VLATV---DNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE-EEEEC---CTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE-EEEec---CCCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence 457889999999955544 567999998865422 11110 011123567899999998 666654322
Q ss_pred CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECC-CCCCce--EEE
Q 043890 302 GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDIN-MDSGPV--ATF 376 (509)
Q Consensus 302 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~-~~~~~~--~~~ 376 (509)
..-.+|.+..... ...+... ....+.++|+||++.|+.+ + .+.|.+||+. ..+... ..+
T Consensus 128 ~~~~l~~~d~~g~----~~~~~~~------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 128 HQGALYSLFPDHH----VKKYFDQ------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp TCEEEEEECTTSC----EEEEEEE------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred CCcEEEEEECCCC----EEEEeec------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 2234454443211 1111111 1356889999999977665 3 3899999984 213221 111
Q ss_pred ee---cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEc
Q 043890 377 QV---HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQT 447 (509)
Q Consensus 377 ~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s 447 (509)
.. .... ...++++++|++.++...++.|..||.++|+.+. .+..+...+++++|.
T Consensus 192 ~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~-~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 192 YKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ-TVKLPVDKTTSCCFG 249 (297)
T ss_dssp EECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE-EEECSSSBEEEEEEE
T ss_pred EECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE-EEECCCCCceEEEEe
Confidence 11 1111 1278999999988877778899999999898887 666655455555554
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=7.4e-10 Score=104.52 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=160.1
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 120 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 120 (509)
.....|+|+++++++++...++.|++||..++.. ....... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-----------------------~~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-----------------------TTVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-----------------------EEEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-----------------------EEeeccC-------------CCC
Confidence 5678999999999888888889999999987654 1222211 223
Q ss_pred eeeEEEEcCCCceEEEeeCCC--eEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 121 NKIRWCQTANGALFLLSTNDK--TIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 121 ~~l~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
. ++| +++++.|+++..++ .|.+|+..++.......
T Consensus 175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g---------------------------------------- 211 (409)
T 3hrp_A 175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG---------------------------------------- 211 (409)
T ss_dssp B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE----------------------------------------
T ss_pred c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEee----------------------------------------
Confidence 4 888 99999998888766 78888776543111100
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 277 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 277 (509)
.........+.+++++|++..|+.+ .++.|+.||..+..... +... ...+
T Consensus 212 -------------------------~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~---~~~g 262 (409)
T 3hrp_A 212 -------------------------QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQL---ELSG 262 (409)
T ss_dssp -------------------------ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEEC---CCCS
T ss_pred -------------------------eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-Eecc---cccC
Confidence 0001122346678999955555557 78899999998654221 1000 0111
Q ss_pred Cccc--eEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeecccc-CCCCcc--ccccccccEEEEEEecCCCE
Q 043890 278 LTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQE-APGSRS--FFTEIIASISDIKFAKDGRH 352 (509)
Q Consensus 278 ~~~~--i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~i~~~~~s~~~~~ 352 (509)
.... ...++|+|++..++++-..++.|+.||..... ..+.... ...... .....-.....++++++|++
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l 336 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF 336 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence 1111 13899999643677776778999999977531 2222211 000000 00001135789999999997
Q ss_pred EEEec-C-CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeC
Q 043890 353 ILSRD-Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGC 424 (509)
Q Consensus 353 l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 424 (509)
+++-. . +.|+.||+.+ ..+..+.++...............+.....++++++|.++++-..++.|+.+++
T Consensus 337 yvad~~~~~~I~~~~~~~--G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILD--GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTCEEEEEETTT--TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCEEEEEECCC--CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77755 4 8999999764 335555544211000000000011222348999999888887778888888765
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=6.3e-11 Score=120.32 Aligned_cols=245 Identities=11% Similarity=0.123 Sum_probs=150.5
Q ss_pred cccceEEEEECCCCCeEEe-----ecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccc
Q 043890 39 EVDIISAIEFDKTGDHLAT-----GDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKS 113 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~-----g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 113 (509)
|...+..++|||||++||. |+....|++||+.+++. ... ..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-----------------------~~~-~~~~-------- 174 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-----------------------LET-PLKD-------- 174 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-----------------------EEE-EEEE--------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-----------------------Ccc-ccCC--------
Confidence 5567899999999999994 44446899999998875 111 1111
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeCCCe-------------EEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCcc
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTNDKT-------------IKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVS 180 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (509)
.....+.| + |++.|+.++.+.. |++|++.+......
T Consensus 175 ----~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~------------------------ 223 (693)
T 3iuj_A 175 ----VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR------------------------ 223 (693)
T ss_dssp ----EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE------------------------
T ss_pred ----ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce------------------------
Confidence 11467899 8 9999998887743 66666654421100
Q ss_pred CCccccCCCCCcceecCCCCCCCccccccccccccceeeeeeeeee-cc-cccCeEEEEECCCCCEEEEE-c----CCeE
Q 043890 181 PKPYLANGGSPSKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYA-HA-HDYHINSISNNSDGETFISA-D----DLRI 253 (509)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~i~~~~~~~~l~~~-~----dg~i 253 (509)
..+. .. |......+.|+|+|++|+.. . ...|
T Consensus 224 ------------------------------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 224 ------------------------------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp ------------------------------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred ------------------------------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 0010 22 33446788999999988654 2 3589
Q ss_pred EEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC---CeEEEEECCCCcccCCceeeeccccCCCC
Q 043890 254 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDLRQSALCDSHAILFEEQEAPGS 330 (509)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
+++|+.++..... .+..+....... +++++..+++.+..+ +.|..+|+.++... ..+.+..+.
T Consensus 262 ~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~---- 327 (693)
T 3iuj_A 262 YVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDLIPER---- 327 (693)
T ss_dssp EEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECCC----
T ss_pred EEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEEecCC----
Confidence 9999987642221 223334444444 566663555555443 67999999876420 012222221
Q ss_pred ccccccccccEEEEEEecCCCEEEEec--C--CeEEEEECCCCCCceEEEeecc-cccccccccccCCCccceeeEEEcC
Q 043890 331 RSFFTEIIASISDIKFAKDGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHE-YLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 331 ~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
..+. .|+++++.|+... + ..|++||+.. .....+.... .. +..+.+++
T Consensus 328 --------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g--~~~~~l~~p~~~~---------------~~~~~~~~ 380 (693)
T 3iuj_A 328 --------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG--KRVREVALPGLGS---------------VSGFNGKH 380 (693)
T ss_dssp --------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTS--CEEEEECCSSSSE---------------EEECCCCT
T ss_pred --------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCC--CeeEEeecCCCce---------------EEeeecCC
Confidence 2333 8899999887753 3 3788998873 3344443221 11 11556778
Q ss_pred CCCEEEEeeCC----CcEEEEeCCCCce
Q 043890 406 DGLRVATGSYS----NLFRVFGCAPGST 429 (509)
Q Consensus 406 ~~~~l~~~~~d----g~i~iw~~~~~~~ 429 (509)
+++.|+....+ +.|+.||+.+++.
T Consensus 381 d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 381 DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 88877665544 8999999987754
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=2.6e-10 Score=103.07 Aligned_cols=231 Identities=9% Similarity=0.089 Sum_probs=146.0
Q ss_pred eEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 43 ISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 43 I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
--+..|+|+ +.++++...++.|..||..+++. ..+. .. ..+.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~~~ 57 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------QRVT-MD------------APVS 57 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------EEEE-CS------------SCEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEe-CC------------CceE
Confidence 457889995 56677777789999999887653 1111 11 4588
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
++++ +++|+++++ . ++.|.+||..+++........
T Consensus 58 ~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~----------------------------------------- 92 (297)
T 3g4e_A 58 SVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVD----------------------------------------- 92 (297)
T ss_dssp EEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECC-----------------------------------------
T ss_pred EEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecC-----------------------------------------
Confidence 9999 999985544 4 568999998876532221100
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC---------CeEEEEEccCCCceeeEeecc
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------g~i~iwd~~~~~~~~~~~~~~ 271 (509)
.......++.++++|+|+++++. .+ ..-.+|.+........
T Consensus 93 ------------------------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----- 143 (297)
T 3g4e_A 93 ------------------------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK----- 143 (297)
T ss_dssp ------------------------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-----
T ss_pred ------------------------CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-----
Confidence 00112337789999999987765 32 3345666554332211
Q ss_pred CCccCCCccceEEEEEeCCCCcEE-EEEEcCCeEEEEECC--CCcccCCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 272 PANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDLR--QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 272 ~~~~~~~~~~i~~l~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
+.........++|+|++ +.| ++.+.++.|.+||+. ++.+. ..+.+.. +..+......+++++
T Consensus 144 ---~~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~--~~~~~~~---------~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 144 ---YFDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQIS--NRRSVYK---------LEKEEQIPDGMCIDA 208 (297)
T ss_dssp ---EEEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEE--EEEEEEE---------CCGGGCEEEEEEEBT
T ss_pred ---EeeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCccc--CcEEEEE---------CCCCCCCCCeeEECC
Confidence 11223456789999998 555 555567899999974 44321 0111111 011124678899999
Q ss_pred CCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEc-CCCCEEEEeeC
Q 043890 349 DGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS-GDGLRVATGSY 415 (509)
Q Consensus 349 ~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 415 (509)
+|++.++.. .+.|..||..+ ++.+..+..+...++ +++|. |+++.|+.++.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~t---------------~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKTT---------------SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSBEE---------------EEEEESGGGCEEEEEEB
T ss_pred CCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCce---------------EEEEeCCCCCEEEEEcC
Confidence 998877765 48899999986 677777765533332 89998 88887766554
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.35 E-value=3.2e-10 Score=102.93 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=147.4
Q ss_pred ecccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhh
Q 043890 38 QEVDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEI 116 (509)
Q Consensus 38 ~h~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 116 (509)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence 3455677899999998 67777788999999873 332 2233233
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
..+.++.+ +++|+++++...++.|.+|+.. ++......
T Consensus 86 -~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~-------------------------------------- 123 (305)
T 3dr2_A 86 -AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVG-------------------------------------- 123 (305)
T ss_dssp -SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEEC--------------------------------------
T ss_pred -CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEe--------------------------------------
Confidence 45788999 9999866665566889999875 43211100
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEE----E-c-------------CCeEEEEEc
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFIS----A-D-------------DLRINLWNL 258 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------dg~i~iwd~ 258 (509)
.........+.+++++++|+++++ | . .+.|+.+|.
T Consensus 124 ---------------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 124 ---------------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp ---------------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred ---------------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 000011123667899999998886 3 1 245666766
Q ss_pred cCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC------CeEEEEECCCCcccCCceeeeccccCCCCcc
Q 043890 259 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDLRQSALCDSHAILFEEQEAPGSRS 332 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
.+++... +. .......++|+|++ +.|+.+... +.|.+||+....+ ...+.+...
T Consensus 177 ~~g~~~~---------~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l--~~~~~~~~~------- 236 (305)
T 3dr2_A 177 DGSPLQR---------MA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL--HDRRHFASV------- 236 (305)
T ss_dssp SSCCCEE---------EE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE--EEEEEEECC-------
T ss_pred CCCcEEE---------Ee-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc--cCCeEEEEC-------
Confidence 5544221 11 23456789999998 767766655 7899999876531 111122110
Q ss_pred ccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEE
Q 043890 333 FFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 333 ~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
.......++++++|++.++. .+.|.+||.. ++.+..+..+.. .. +++|+++++.|..
T Consensus 237 ----~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~-~~---------------~~~f~~d~~~L~i 293 (305)
T 3dr2_A 237 ----PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT-AS---------------NCTFDQAQQRLFI 293 (305)
T ss_dssp ----SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC-CC---------------EEEECTTSCEEEE
T ss_pred ----CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc-ee---------------EEEEeCCCCEEEE
Confidence 01335668899999965555 4569999985 466666654432 22 7899999988888
Q ss_pred eeCCCc
Q 043890 413 GSYSNL 418 (509)
Q Consensus 413 ~~~dg~ 418 (509)
++.++.
T Consensus 294 t~~~~l 299 (305)
T 3dr2_A 294 TGGPCL 299 (305)
T ss_dssp EETTEE
T ss_pred EcCCeE
Confidence 777643
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.34 E-value=4.5e-10 Score=103.01 Aligned_cols=274 Identities=11% Similarity=0.079 Sum_probs=154.2
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 45 AIEFDKTGDHLATGD----------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 45 ~v~~s~~~~~la~g~----------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.++++|||++|++++ .++.|.+||..+.+. ...+.-.... ..
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-----------------------~~~I~v~~g~-----r~ 133 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-----------------------TADIELPDAP-----RF 133 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-----------------------EEEEEETTCC-----CC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-----------------------EEEEECCCcc-----cc
Confidence 399999999888775 357899999998876 2322110000 00
Q ss_pred hhhccceeeEEEEcCCCceEEEeeC--CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCc
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTN--DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPS 192 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 192 (509)
.....-..+.| +|||++++++.. ++.|.++|+.+++........
T Consensus 134 ~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-------------------------------- 179 (386)
T 3sjl_D 134 LVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-------------------------------- 179 (386)
T ss_dssp CBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--------------------------------
T ss_pred ccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--------------------------------
Confidence 00023567888 999999988864 689999999988754432110
Q ss_pred ceecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeecc
Q 043890 193 KEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 271 (509)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~ 271 (509)
+ . ...+....+.+++. .||.+.+.++.+........
T Consensus 180 -----------------------------------g----~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--- 216 (386)
T 3sjl_D 180 -----------------------------------D----C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--- 216 (386)
T ss_dssp -----------------------------------S----E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---
T ss_pred -----------------------------------C----c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---
Confidence 0 0 00111112223222 45555555554311111100
Q ss_pred CCccCCCccceE-EEEEe-CCCCcEEEEEEcCCeEEEEECCCCccc-CCceeeeccccCCCCccccccccccEEEEEEec
Q 043890 272 PANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDLRQSALC-DSHAILFEEQEAPGSRSFFTEIIASISDIKFAK 348 (509)
Q Consensus 272 ~~~~~~~~~~i~-~l~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 348 (509)
...+..-..++. ...|. ++| ++++ .+.+|.|.+.|+.+.... ......+...... ..-.......+++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~-----~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-----DGWRPGGWQQVAYHR 289 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH-----TTEEECSSSCEEEET
T ss_pred cceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceecccccccc-----ccccCCCcceeeECC
Confidence 001111112221 23664 565 5444 566899999999876521 1111111100000 000012345578899
Q ss_pred CCCEEEEec-----------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EEEEe-eC
Q 043890 349 DGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RVATG-SY 415 (509)
Q Consensus 349 ~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~ 415 (509)
+++.++... .+.|.++|+.+ .+.+..+...... . .+.+++|++ +|+++ ..
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~-~---------------~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI-D---------------SINVSQDEKPLLYALSTG 352 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE-C---------------EEEECSSSSCEEEEEETT
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc-c---------------eEEECCCCCeEEEEEcCC
Confidence 988877742 15799999997 6777776653321 1 899999997 66665 45
Q ss_pred CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCC
Q 043890 416 SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPS 449 (509)
Q Consensus 416 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~ 449 (509)
++.|.++|..+++.+. +++.... -..+.+++|
T Consensus 353 ~~~VsViD~~t~k~~~-~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELR-SVNQLGH-GPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEE-EECCCCS-SCCEEEECC
T ss_pred CCeEEEEECCCCcEEE-EecCCCC-CceeEECCc
Confidence 8999999999999887 6665432 244455554
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.31 E-value=1.3e-09 Score=101.94 Aligned_cols=87 Identities=9% Similarity=0.143 Sum_probs=63.7
Q ss_pred EEEEecCCCEEEEec-----------CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCC-EE
Q 043890 343 DIKFAKDGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGL-RV 410 (509)
Q Consensus 343 ~~~~s~~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 410 (509)
.++++|+++.++... .+.|.++|+.+ .+.+..+....... .+.|+|||+ +|
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P~----------------gia~spDg~~~l 385 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEID----------------SINVSQDAEPLL 385 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEEC----------------EEEECCSSSCEE
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCcC----------------eEEEccCCCEEE
Confidence 368999988776642 25799999997 67787776543221 899999999 88
Q ss_pred EEee-CCCcEEEEeCCCCceeeeee-ccCCCceeEEEEcCC
Q 043890 411 ATGS-YSNLFRVFGCAPGSTEATTL-EASKNPMRRQVQTPS 449 (509)
Q Consensus 411 ~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~~~~s~~ 449 (509)
+++. .++.|.++|+.+++.+. ++ .....|. +..+||
T Consensus 386 yv~n~~s~~VsVID~~t~kvv~-tI~~vG~~P~--~i~~~~ 423 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATGEELR-SVDQLGRGPQ--IITTHD 423 (426)
T ss_dssp EEEETTTTEEEEEETTTCCEEE-EECCCSSSCC--EEECCC
T ss_pred EEEcCCCCeEEEEECCCCCEEE-EecCCCCCCc--EEEcCC
Confidence 8887 58999999999999987 65 3333333 455553
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.31 E-value=4.9e-09 Score=94.72 Aligned_cols=221 Identities=7% Similarity=0.021 Sum_probs=145.1
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
..+.+|.+ +++|+.+++...++.|.+||.. ++.... .
T Consensus 20 ~~p~~i~~--d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~--------------------------------------- 56 (300)
T 2qc5_A 20 SGPYGITS--SEDGKVWFTQHKANKISSLDQS-GRIKEF-E--------------------------------------- 56 (300)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E---------------------------------------
T ss_pred CCcceeeE--CCCCCEEEEcCCCCeEEEECCC-CceEEE-E---------------------------------------
Confidence 45788988 8999877777678999999977 432111 0
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 276 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 276 (509)
.......+.++++.++++++++. .++.|..||.. ++. ..+ ...
T Consensus 57 ----------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~------~~~ 100 (300)
T 2qc5_A 57 ----------------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEY------PLP 100 (300)
T ss_dssp ----------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE------ECS
T ss_pred ----------------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEe------cCC
Confidence 01122457789999999988887 68899999987 442 111 122
Q ss_pred CCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 277 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 277 ~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
.....+.++++.+++ +++++...++.|..||.. ++. ..+.... ....+..+++.++|++.++.
T Consensus 101 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~----------~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 101 QPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTI-----YEYDLPN----------KGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE-----EEEECSS----------TTCCEEEEEECTTSSEEEEE
T ss_pred CCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCE-----EEccCCC----------CCCCceeEEECCCCCEEEEe
Confidence 233568899999998 777776668899999987 542 2221110 11467899999999977766
Q ss_pred c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 357 D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 357 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
. .+.|..||.. +... .+...... ..+..++++++|++.++....+.|.+|+. +++.....+.
T Consensus 164 ~~~~~i~~~~~~--g~~~-~~~~~~~~-------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 226 (300)
T 2qc5_A 164 NQNNSIGRITNT--GKLE-EYPLPTNA-------------AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP 226 (300)
T ss_dssp TTTTEEEEECTT--CCEE-EEECSSTT-------------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred cCCCeEEEECCC--CcEE-EeeCCCCC-------------CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence 5 4889999983 3332 22211110 11237899999987777667788999998 5655442344
Q ss_pred cCCCceeEEEEcCCCC
Q 043890 436 ASKNPMRRQVQTPSRP 451 (509)
Q Consensus 436 ~~~~~v~~~~~s~~~~ 451 (509)
.+...+..+++.+++.
T Consensus 227 ~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 227 TPNARPHAITAGKNSE 242 (300)
T ss_dssp STTCCEEEEEECSTTC
T ss_pred CCCCCceEEEECCCCC
Confidence 4445566777766643
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=1.2e-10 Score=107.49 Aligned_cols=260 Identities=7% Similarity=0.020 Sum_probs=146.4
Q ss_pred cceEEEEECCCCCeEEeec--CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 41 DIISAIEFDKTGDHLATGD--RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
.....++++|+|+++++.. .++.++||.+.+++. ... |... .....|. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----~~~----------p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----IPF----------PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----EES----------CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----ecC----------CCcc--cCcccce------------e
Confidence 5788999999999988853 234367777663321 000 0000 0011122 5
Q ss_pred cceeeEEEEcCCCceEEEeeC-----CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcc
Q 043890 119 KINKIRWCQTANGALFLLSTN-----DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSK 193 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (509)
.+.+|++ +++++++++-.. ++.|.+||+.+++..........
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------------------------------- 114 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------------------------------- 114 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------------------------------
Confidence 6899999 888876665433 57899999987764332111000
Q ss_pred eecCCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-----cCCeEEEEEccCCCceeeEe
Q 043890 194 EFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIV 268 (509)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~dg~i~iwd~~~~~~~~~~~ 268 (509)
...+...+..+++++++..+..+ .++.|.+||+.+++.. .+
T Consensus 115 --------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-r~- 160 (343)
T 2qe8_A 115 --------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-RV- 160 (343)
T ss_dssp --------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-EE-
T ss_pred --------------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-EE-
Confidence 01122346788898765555444 3689999999876532 21
Q ss_pred eccCCccCCCccceE-EEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 269 DVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 269 ~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
+..|..... ...+.+++ ..+.+.+.++.++.|. ..+..++|+
T Consensus 161 ------~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~------------------------------~~~~gia~s 203 (343)
T 2qe8_A 161 ------LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH------------------------------LGVNGIVLD 203 (343)
T ss_dssp ------CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC------------------------------CCEEEEEEC
T ss_pred ------ecCCCcccccccceeECC-EEEEeccCCCceecee------------------------------cccceeEec
Confidence 222211000 03344565 5666666676665442 146789999
Q ss_pred cCCCEEEEec-C-CeEEEEECCC--CCCc-----eE--EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCC
Q 043890 348 KDGRHILSRD-Y-MTLKLWDINM--DSGP-----VA--TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS 416 (509)
Q Consensus 348 ~~~~~l~s~~-~-~~i~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 416 (509)
|||+.|+.+. . ..+..++... .... .. ...++..... .++++++|.++++...+
T Consensus 204 ~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd---------------gia~d~~G~l~va~~~~ 268 (343)
T 2qe8_A 204 AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD---------------GISIDKDHNIYVGDLAH 268 (343)
T ss_dssp TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS---------------CEEECTTCCEEEEEGGG
T ss_pred cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc---------------eEEECCCCCEEEEccCC
Confidence 9999888864 3 4555555321 0100 00 0111111111 78999999999988889
Q ss_pred CcEEEEeCCCCceeeeeecc-CCCceeEEEEcCC
Q 043890 417 NLFRVFGCAPGSTEATTLEA-SKNPMRRQVQTPS 449 (509)
Q Consensus 417 g~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~s~~ 449 (509)
+.|.+||..+++... .... +......+++.++
T Consensus 269 ~~V~~~d~~~G~~~~-~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 269 SAIGVITSADRAYKL-LVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp TEEEEEETTTTEEEE-EEECGGGSCEEEEEECTT
T ss_pred CeEEEEECCCCCEEE-EEECCceecCCeeEECCC
Confidence 999999985565432 2221 1233445555543
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=2.2e-09 Score=98.30 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=100.4
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc------CCeE
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSI 304 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~------dg~i 304 (509)
..+.+++++++|+++++..+ .|.+||.++++.. .+... ........+..++++|+| +++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~~---~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAEL---ESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEECS---STTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEeeC---CCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence 35788999999987776644 4999998776532 11100 001123468899999998 66655432 2455
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECC--CCC-Cc--eEEEe
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDIN--MDS-GP--VATFQ 377 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~--~~~-~~--~~~~~ 377 (509)
..+| +++. ..+... ......++|+||++.|+.+ + ++.|.+||+. + + .. ...+.
T Consensus 164 ~~~~--~g~~-----~~~~~~------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~ 223 (326)
T 2ghs_A 164 YHVA--KGKV-----TKLFAD------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFI 223 (326)
T ss_dssp EEEE--TTEE-----EEEEEE------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEE
T ss_pred EEEe--CCcE-----EEeeCC------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEE
Confidence 5565 3431 222111 1346789999999977665 3 3899999986 3 2 11 11221
Q ss_pred ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 378 VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
....... ....++++++|.+.++...++.|..|+. +++.+. .+..+
T Consensus 224 ~~~~~~~------------~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~-~i~~~ 269 (326)
T 2ghs_A 224 DSTGIKG------------GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIA-RYEVP 269 (326)
T ss_dssp ECTTSSS------------EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEE-EEECS
T ss_pred ECCCCCC------------CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEE-EEECC
Confidence 1000000 0127889999998877767789999998 466554 44433
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=1.6e-10 Score=106.52 Aligned_cols=142 Identities=8% Similarity=0.054 Sum_probs=97.8
Q ss_pred cccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 229 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 229 ~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
+.. |+.++| ++++|+++.++.|++||+++..... ....|...+.++.+.+. + ++++..||.|.+||
T Consensus 87 lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~--------~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~d 152 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFR--------TVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALD 152 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEE--------EEEECSSCEEEEEECSS--E-EEEEETTSEEEEEE
T ss_pred CCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccC--------ccceeecceeeEEecCC--C-EEEEECCCCEEEEE
Confidence 455 999999 9999999988999999998765332 23345566788777654 3 88889999999999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCc--eEEEeecccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGP--VATFQVHEYLRPKL 386 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~ 386 (509)
+..+.. ... ...|++++|+|+| ..+.+.||.+++|+... ... ..++.........
T Consensus 153 l~~~~~-----~~~---------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~~- 209 (388)
T 1xip_A 153 LRTKST-----KQL---------------AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEEL- 209 (388)
T ss_dssp TTTCCE-----EEE---------------EESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTS-
T ss_pred ccCCcc-----ccc---------------cCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccceecCCcccccc-
Confidence 998763 111 1479999999999 44444679999998875 332 3444221100000
Q ss_pred cccccCCCccceeeEEEcCCCCEEEE
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVAT 412 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~ 412 (509)
..+ -..|.++.|.+++.+|++
T Consensus 210 --~~~---~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 210 --PVE---EYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --CTT---TSEEEEEEESSSSEEEEE
T ss_pred --cCC---CeeEEEEEEecCCeEEEE
Confidence 000 123458999999998886
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=4.1e-09 Score=99.45 Aligned_cols=222 Identities=11% Similarity=0.043 Sum_probs=132.0
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecC
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSF 197 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 197 (509)
.....|+| +++++++++...++.|++||..++......
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~---------------------------------------- 168 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVH---------------------------------------- 168 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEee----------------------------------------
Confidence 35678888 899987777777899999999876532210
Q ss_pred CCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCC--eEEEEEccCCCceeeEeeccCCc
Q 043890 198 PPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.. ..... ++|+++++.|+++ .++ .|.+++.........+-. .
T Consensus 169 -----------------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~----~ 213 (409)
T 3hrp_A 169 -----------------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ----L 213 (409)
T ss_dssp -----------------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE----C
T ss_pred -----------------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee----c
Confidence 11 11123 8899999988887 544 788898876543211100 0
Q ss_pred cCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEE
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHIL 354 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 354 (509)
.......+.+++++|++ ..|+.+..++.|+.||+.++.. ..+......... ...+...++|+|++..|+
T Consensus 214 ~~~~~~~p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~-----~~~~~~~~~g~~-----~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETE-EWLYFVDSNKNFGRFNVKTQEV-----TLIKQLELSGSL-----GTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp CTTSCSCCCBCEECTTS-SEEEEECTTCEEEEEETTTCCE-----EEEEECCCCSCC-----CCSSCCEEEEETTTTEEE
T ss_pred cchhcCCcEEEEEeCCC-CeEEEEECCCcEEEEECCCCCE-----EEEecccccCCC-----CCCccccEEEeCCCCEEE
Confidence 01134566789999954 3445577788999999987652 222111100000 001113899999644444
Q ss_pred Ee-c-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCCCCcee
Q 043890 355 SR-D-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCAPGSTE 430 (509)
Q Consensus 355 s~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~ 430 (509)
.+ . .+.|+.||... . +..+.++...............+.....++++++|+++++-. .++.|+.|++.+++..
T Consensus 283 v~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 44 3 48999998773 2 444443320000000000001111223899999999777777 7899999998777643
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=1.5e-09 Score=98.49 Aligned_cols=193 Identities=8% Similarity=0.058 Sum_probs=120.0
Q ss_pred ccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCC-CccceEEEEEeCCCCcEEEE----EEc---
Q 043890 230 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAY----SSS--- 300 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~----~~~--- 300 (509)
...+..++++++|+++++. .++.|.+|+.+ ++ ...+.. .... ....+..++++++| +++++ |..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~----~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~ 157 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVG----RYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPS 157 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEEC----EETTEECSCCCCEEECTTS-CEEEECCSGGGSCGG
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEe----ccCCCccCCCCCEEECCCC-CEEEeCcCCCccccc
Confidence 3457889999999977777 67889999976 33 211110 1111 12346789999998 77775 321
Q ss_pred ----------CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C------CeEEE
Q 043890 301 ----------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y------MTLKL 363 (509)
Q Consensus 301 ----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~------~~i~i 363 (509)
.+.|..||..+++. ..+... .....++|+||++.|+.++ . +.|++
T Consensus 158 ~~~~~~~~~~~~~v~~~d~~~g~~-----~~~~~~-------------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~ 219 (305)
T 3dr2_A 158 QGCPADPELAHHSVYRLPPDGSPL-----QRMADL-------------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITA 219 (305)
T ss_dssp GSCCCCCSSSCEEEEEECSSSCCC-----EEEEEE-------------SSEEEEEECTTSSEEEEEECCC---CCCEEEE
T ss_pred cccccccccCCCeEEEEcCCCCcE-----EEEecC-------------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEE
Confidence 25677788766653 222111 3567899999999777653 2 58999
Q ss_pred EECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 364 WDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 364 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
||+... . +.......... ... ...++++++|++.+ ++.+ .|.+|+.+ ++.+. .+..+
T Consensus 220 ~~~~~~-~-l~~~~~~~~~~--------~~~---pdgi~~d~~G~lwv-~~~~-gv~~~~~~-g~~~~-~~~~~------ 276 (305)
T 3dr2_A 220 FAWRDG-A-LHDRRHFASVP--------DGL---PDGFCVDRGGWLWS-SSGT-GVCVFDSD-GQLLG-HIPTP------ 276 (305)
T ss_dssp EEEETT-E-EEEEEEEECCS--------SSC---CCSEEECTTSCEEE-CCSS-EEEEECTT-SCEEE-EEECS------
T ss_pred EEecCC-C-ccCCeEEEECC--------CCC---CCeEEECCCCCEEE-ecCC-cEEEECCC-CCEEE-EEECC------
Confidence 998752 2 21111100000 000 01688999999554 4444 49999984 65554 32211
Q ss_pred EEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 444 QVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 444 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
..+..++|+|+++.|.+++.+.++.++
T Consensus 277 --------------------------------------~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 277 --------------------------------------GTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp --------------------------------------SCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred --------------------------------------CceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 236788999999999998888887765
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=2.1e-09 Score=98.41 Aligned_cols=228 Identities=12% Similarity=0.055 Sum_probs=139.7
Q ss_pred eEEEEECCC-CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccce
Q 043890 43 ISAIEFDKT-GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121 (509)
Q Consensus 43 I~~v~~s~~-~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 121 (509)
.....|+|+ +.++++...++.|..||..+++. ..+. .. ..+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~v~ 93 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHA-LP------------FMGS 93 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEE-CS------------SCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEE-CC------------Ccce
Confidence 467889997 55666776788999999876543 1121 11 4588
Q ss_pred eeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCC
Q 043890 122 KIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGG 201 (509)
Q Consensus 122 ~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 201 (509)
++.| +++|+++++. .+ .|.+||..+++........
T Consensus 94 ~i~~--~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~----------------------------------------- 128 (326)
T 2ghs_A 94 ALAK--ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELE----------------------------------------- 128 (326)
T ss_dssp EEEE--EETTEEEEEE-TT-EEEEEETTTCCEEEEECSS-----------------------------------------
T ss_pred EEEE--eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC-----------------------------------------
Confidence 8999 8888776654 44 5889998776532210000
Q ss_pred CCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cC------CeEEEEEccCCCceeeEeeccCCc
Q 043890 202 IPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPAN 274 (509)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d------g~i~iwd~~~~~~~~~~~~~~~~~ 274 (509)
.......+.+++++|+|+++++. .+ +.|..++ + .....
T Consensus 129 ------------------------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~-------- 173 (326)
T 2ghs_A 129 ------------------------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GKVTK-------- 173 (326)
T ss_dssp ------------------------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEE--------
T ss_pred ------------------------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEE--------
Confidence 00011347789999999977765 32 3455555 3 22211
Q ss_pred cCCCccceEEEEEeCCCCcEEEEE-EcCCeEEEEECC--CC-cccCCceeeeccccCCCCccccccccccEEEEEEecCC
Q 043890 275 MEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDLR--QS-ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG 350 (509)
Q Consensus 275 ~~~~~~~i~~l~~~~~~~~~l~~~-~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 350 (509)
+.........++|+|++ +.++.+ +.++.|.+||+. ++ .+.. .+.+... .........++++++|
T Consensus 174 ~~~~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~~---------~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 174 LFADISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFIDS---------TGIKGGMDGSVCDAEG 241 (326)
T ss_dssp EEEEESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEEC---------TTSSSEEEEEEECTTS
T ss_pred eeCCCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccC--ceEEEEC---------CCCCCCCCeeEECCCC
Confidence 11122346789999998 655444 457899999986 44 3211 1112110 0011356789999999
Q ss_pred CEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEc-CCCCEEEEeeCC
Q 043890 351 RHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS-GDGLRVATGSYS 416 (509)
Q Consensus 351 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 416 (509)
.+.++.. .+.|.+||.. ++.+..+..+...+ .+++|+ ++++.|+.++..
T Consensus 242 ~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEeCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEecC
Confidence 9777764 4889999984 45666665443222 289998 888877655443
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=1.9e-10 Score=105.87 Aligned_cols=153 Identities=9% Similarity=0.101 Sum_probs=102.3
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceee--EeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
.++.+++++...++++|....+.+|+++..+.... -....+.....+.. |+.++| ++ ++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 58889999999999999434677799764331000 00001111223456 999999 76 888888 8899999999
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cCCeEEEEECCCCCCceEEEeecccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DYMTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
++... ....... ...+.++.+.+.. ++++ ++|.|.+||+.. ..... +...
T Consensus 114 ~sl~~----~~~~~~~------------~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~~------ 164 (388)
T 1xip_A 114 EELSE----FRTVTSF------------EKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQN------ 164 (388)
T ss_dssp SSTTC----EEEEEEC------------SSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEES------
T ss_pred hhhhc----cCcccee------------ecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccCC------
Confidence 87652 1222222 2457777776543 5554 579999999996 44332 1222
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
|.+++|||+| ++.|..||.+++|+...++.
T Consensus 165 ---------Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 165 ---------VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp ---------EEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred ---------ceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence 3399999999 67899999999999886664
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.16 E-value=3e-08 Score=91.50 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=92.9
Q ss_pred EEEECCCCCEEEEEc--------------------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEE--eCCCC
Q 043890 235 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC 292 (509)
Q Consensus 235 ~i~~~~~~~~l~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~ 292 (509)
.+-|+|+++.+++++ +.+|.+||+.+.+...++ .+.........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI------~vg~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL------TLGEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE------ESCTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE------ecCCCCCccceeEeeECCCC-
Confidence 467789999888774 789999999975433222 12111234455656 9998
Q ss_pred cEEEEEE------cCCeEEEEECCCCcccCCceeeecccc--CCCCccc----cccccccEEEEEEecCCCEEEEec--C
Q 043890 293 NMLAYSS------SKGSIRLIDLRQSALCDSHAILFEEQE--APGSRSF----FTEIIASISDIKFAKDGRHILSRD--Y 358 (509)
Q Consensus 293 ~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~i~~~~~s~~~~~l~s~~--~ 358 (509)
+++.++. .+++|.+|....+.. +....+.... ....... +.+-......+.+++||++|.++. .
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~--~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKW--NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEE--EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCce--eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 5555554 567888877765432 1122221111 0000000 001113578899999999999874 4
Q ss_pred CeEEEEECCCCCCc--eEEEeecccccccccccccCCCc-cceeeEEEcCCCCEEEEee
Q 043890 359 MTLKLWDINMDSGP--VATFQVHEYLRPKLCDLYENDSI-FDKFECCLSGDGLRVATGS 414 (509)
Q Consensus 359 ~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~ 414 (509)
+.|.+||+.....+ +..+..... ....... ....+ ..-..++++|||++|+++.
T Consensus 343 d~VavfdV~d~~~~~lv~~I~tGG~-~~~~~~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 343 GEVRQYDISNPFKPVLTGKVKLGGI-FHRADHP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TEEEEEECSSTTSCEEEEEEECBTT-TTCBCCT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEEecCCCCcEEEEEEEeCCe-ecccccc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999643322 223322110 0000000 00000 0001789999999999888
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=4.3e-09 Score=106.88 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=102.2
Q ss_pred EEEEECCCCCEEEEE-cC-------------CeEEEEEccCCCceeeEeeccCCccCC-CccceEEEEEeCCCCcEEE-E
Q 043890 234 NSISNNSDGETFISA-DD-------------LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLA-Y 297 (509)
Q Consensus 234 ~~i~~~~~~~~l~~~-~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~-~ 297 (509)
..++|+ |++.|+.+ .+ ..|++|++.+......++ ..... |...+.++.|+||+ ++|+ +
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v----~~~~~~~~~~~~~~~~SpDg-~~l~~~ 251 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLV----FGAIPAQHHRYVGATVTEDD-RFLLIS 251 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEE----ESCSGGGCCSEEEEEECTTS-CEEEEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEE----EecCCCCCeEEEEEEEcCCC-CEEEEE
Confidence 356788 88888776 54 349999988754321111 12233 44557889999999 6554 4
Q ss_pred EEc---CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEE-ec----CCeEEEEECCCC
Q 043890 298 SSS---KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS-RD----YMTLKLWDINMD 369 (509)
Q Consensus 298 ~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~----~~~i~iwd~~~~ 369 (509)
.+. +..|.++|+.++... ...+..+. ...... ++++|..|+. .. .+.|..+|+.+.
T Consensus 252 ~~~~~~~~~i~~~d~~~~~~~---~~~l~~~~------------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 252 AANSTSGNRLYVKDLSQENAP---LLTVQGDL------------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EESSSSCCEEEEEETTSTTCC---CEEEECSS------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EccCCCCcEEEEEECCCCCCc---eEEEeCCC------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 432 258999999876421 23333221 233333 6666665544 32 267999999863
Q ss_pred CCc--eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC---cEEEEeCCCCceeeeeec-cCCCceeE
Q 043890 370 SGP--VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN---LFRVFGCAPGSTEATTLE-ASKNPMRR 443 (509)
Q Consensus 370 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~-~~~~~v~~ 443 (509)
.. ...+..+... .+.|++++++|+....++ .|++|+++.+.. . .+. ...+.+..
T Consensus 316 -~~~~~~~l~~~~~~-----------------~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~-~l~~p~~~~~~~ 375 (693)
T 3iuj_A 316 -GPAHWRDLIPERQQ-----------------VLTVHSGSGYLFAEYMVDATARVEQFDYEGKRV-R-EVALPGLGSVSG 375 (693)
T ss_dssp -CGGGCEEEECCCSS-----------------CEEEEEETTEEEEEEEETTEEEEEEECTTSCEE-E-EECCSSSSEEEE
T ss_pred -CccccEEEecCCCC-----------------EEEEEEECCEEEEEEEECCeeEEEEEECCCCee-E-EeecCCCceEEe
Confidence 32 2444444332 228899999888776544 789999885443 3 332 23334444
Q ss_pred EEEcCCCC
Q 043890 444 QVQTPSRP 451 (509)
Q Consensus 444 ~~~s~~~~ 451 (509)
+.++++++
T Consensus 376 ~~~~~d~~ 383 (693)
T 3iuj_A 376 FNGKHDDP 383 (693)
T ss_dssp CCCCTTCS
T ss_pred eecCCCCC
Confidence 44444443
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=9.1e-09 Score=94.58 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=59.0
Q ss_pred EEEecCCCEEEEe-c-C--------CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCE-EEE
Q 043890 344 IKFAKDGRHILSR-D-Y--------MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR-VAT 412 (509)
Q Consensus 344 ~~~s~~~~~l~s~-~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~ 412 (509)
++++||++.++.+ . . +.+.++|+.+ .+.+..+....... .+.|+|||++ +++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p~----------------gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDSD----------------AIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEEC----------------EEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCcc----------------eEEECCCCCEEEEE
Confidence 6899999877764 2 2 3567999997 67777766544221 8999999984 555
Q ss_pred ee-CCCcEEEEeCCCCceeeeeeccCCCc
Q 043890 413 GS-YSNLFRVFGCAPGSTEATTLEASKNP 440 (509)
Q Consensus 413 ~~-~dg~i~iw~~~~~~~~~~~~~~~~~~ 440 (509)
.. .++.|.++|+.+++.+. ++.....|
T Consensus 332 ~~~~~~~VsVID~~t~kvv~-~I~vg~~P 359 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQS-SVELDKGP 359 (368)
T ss_dssp EETTTTEEEEEESSSCEEEE-ECCCCSCC
T ss_pred ccCCCCeEEEEECCCCcEEE-EEECCCCC
Confidence 55 58999999999999998 77766543
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.05 E-value=9.1e-09 Score=96.16 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=142.8
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccC-Ccchhhccc
Q 043890 45 AIEFDKTGDHLATGD----------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSH-EPEFDYLKS 113 (509)
Q Consensus 45 ~v~~s~~~~~la~g~----------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 113 (509)
.++++|||++|+++. .++.|.++|..+.+. ...+.-. ...+
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-----------------------v~~I~v~g~~r~----- 173 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF----- 173 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-----------------------EEEEEETTCCCC-----
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-----------------------EEEEECCCcccc-----
Confidence 799999999988876 367899999998876 2222210 0000
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeC--CCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTN--DKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSP 191 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 191 (509)
........+.| +|||++++++.. ++.|.+.|+.+++.......... ....+.+. ...+.++++|+.+
T Consensus 174 -~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~-------~~~v~~~~dG~~~ 242 (426)
T 3c75_H 174 -LVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASP-------TVFYMNCRDGSLA 242 (426)
T ss_dssp -CBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEET-------TEEEEEETTSSEE
T ss_pred -ccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCC-------cEEEEEcCCCCEE
Confidence 00023567888 999999998874 57999999999876554332110 00000000 0001222333221
Q ss_pred cceecCCCCCCCccccccccccccceeeeeeeeeecccccC-eEEEEECCCCCEEEEE-cCCeEEEEEccCCCcee-eEe
Q 043890 192 SKEFSFPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYH-INSISNNSDGETFISA-DDLRINLWNLEISNQSF-NIV 268 (509)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~-~~~ 268 (509)
+.+....... ......+ .....+ ...+.+.+++..++.. ..+.|.+.|+....... ..+
T Consensus 243 ---------------~V~~~~~~v~--~~~~~~~-~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 243 ---------------RVDFADGETK--VTNTEVF-HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp ---------------EEECCTTCCE--EEECCCC-SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred ---------------EEECCCCcEE--EEeeeee-ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence 1111000000 0000000 101111 1134678888877666 77899999987543211 000
Q ss_pred eccC-Cc--cCCCccceEEEEEeCCCCcEEEEEEc---------CCeEEEEECCCCcccCCceeeeccccCCCCcccccc
Q 043890 269 DVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTE 336 (509)
Q Consensus 269 ~~~~-~~--~~~~~~~i~~l~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (509)
.+.. .. ..........++++|++.+++++... ++.|.++|+.+.+. +..+...
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv----v~~I~vg----------- 369 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER----INKIELG----------- 369 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE-----------
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE----EEEEECC-----------
Confidence 0000 00 00011122236899998344444331 35799999999875 4555433
Q ss_pred ccccEEEEEEecCCC-EEEEec--CCeEEEEECCCCCCceEEE
Q 043890 337 IIASISDIKFAKDGR-HILSRD--YMTLKLWDINMDSGPVATF 376 (509)
Q Consensus 337 ~~~~i~~~~~s~~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~ 376 (509)
.....+.|+|||+ ++++.. ++.|.++|+.+ .+.+.++
T Consensus 370 --~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI 409 (426)
T 3c75_H 370 --HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV 409 (426)
T ss_dssp --EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred --CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence 2578899999999 787764 59999999997 6777776
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=1.1e-07 Score=95.78 Aligned_cols=175 Identities=10% Similarity=0.062 Sum_probs=107.4
Q ss_pred EEEECCCCCEEEEE-cCC-------------------eEEEEEccCCCceeeEeeccCCccCCC-------ccceEEEEE
Q 043890 235 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDL-------TEVITSAEF 287 (509)
Q Consensus 235 ~i~~~~~~~~l~~~-~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~l~~ 287 (509)
.+++++++..++.+ .++ .|..+|.++++...... ...| .....-+..
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~------~~~~d~wd~~~~~~p~l~~~ 320 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ------ETPGDNWDYTSTQPMILADI 320 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCCEEEEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe------cCCCcccccccCCCcEEEec
Confidence 56778888888777 543 58899999888665431 1112 112223333
Q ss_pred eCCCC--cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCC-------CCc--------------cccccccc--cEE
Q 043890 288 HPTHC--NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAP-------GSR--------------SFFTEIIA--SIS 342 (509)
Q Consensus 288 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~~--------------~~~~~~~~--~i~ 342 (509)
..+|. ..++.++.+|.+.++|.+++++... +.....+ .-. ..+.+..+ .-.
T Consensus 321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~ 396 (677)
T 1kb0_A 321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISA----KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH 396 (677)
T ss_dssp EETTEEEEEEEECCTTSEEEEEETTTCCEEEE----EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS
T ss_pred ccCCcEeeEEEEECCCCEEEEEECCCCCEecc----ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCC
Confidence 34552 5788899999999999999986321 1111000 000 00000000 012
Q ss_pred EEEEecCCCEEEEec--------------------------------------------CCeEEEEECCCCCCceEEEee
Q 043890 343 DIKFAKDGRHILSRD--------------------------------------------YMTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 343 ~~~~s~~~~~l~s~~--------------------------------------------~~~i~iwd~~~~~~~~~~~~~ 378 (509)
.++++|++.++++.. .+.|..||+.+ ++.+-.+..
T Consensus 397 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~ 475 (677)
T 1kb0_A 397 PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEH 475 (677)
T ss_dssp CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEE
T ss_pred CceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCC
Confidence 578899888777631 16788999987 555555543
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
.... ....+..++.+++.++.||.+++||..+|+.+. .+...
T Consensus 476 ~~~~----------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw-~~~~~ 517 (677)
T 1kb0_A 476 VSPW----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW-EAPTG 517 (677)
T ss_dssp SSSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEE-EEECS
T ss_pred CCCC----------------cCcceEeCCCEEEEECCCCcEEEEECCCCceee-eeeCC
Confidence 2211 144566788889999999999999999999987 65543
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.96 E-value=1.7e-06 Score=76.46 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=106.5
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc--CCeEEEE
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 307 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~--dg~i~vw 307 (509)
....+++++++..|..+ ..+.|.+++++.... ..+. .........++++|++.+++++... .+.|..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 46789999876665555 678999999875332 1111 1112456899999975244444333 4688888
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPK 385 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 385 (509)
++.... ...+.... ......+++++++..|+.++ .+.|.++|+.. ......+.....+
T Consensus 152 ~~dg~~-----~~~~~~~~-----------~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P--- 211 (267)
T 1npe_A 152 HMDGTN-----RRILAQDN-----------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP--- 211 (267)
T ss_dssp ETTSCC-----CEEEECTT-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE---
T ss_pred ecCCCC-----cEEEEECC-----------CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc---
Confidence 886543 12221110 13578899999888776654 38999999874 2222222111100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCCCCceeeeeeccCCC-ceeEEEEcCCCC
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCAPGSTEATTLEASKN-PMRRQVQTPSRP 451 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~ 451 (509)
..++.. +..|+.+. .++.|..+|..+++.+. .+..... ....+++.|++.
T Consensus 212 -------------~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~-~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 212 -------------FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD-TFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -------------EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE-EECCSSCCCCCCEEEECSCC
T ss_pred -------------eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE-EEccccccccceeeecCccC
Confidence 155553 44555444 56899999999998887 6654432 356777777654
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.93 E-value=4.9e-07 Score=91.16 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=107.2
Q ss_pred EEEECCCCCEEEEE-cCC-------------------eEEEEEccCCCceeeEeeccCCccCC--CccceEEEEEeCCCC
Q 043890 235 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHC 292 (509)
Q Consensus 235 ~i~~~~~~~~l~~~-~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~ 292 (509)
.++++|++.+++.+ .++ .|..+|.++++......... ..... ....+.......++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP-GDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST-TCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC-cccccccCCCCcEEEeeccCCc
Confidence 56778888888887 665 39999999988665432100 00000 112222223333541
Q ss_pred --cEEEEEEcCCeEEEEECCCCcccCCcee---eeccc----c------------CCCCc--ccccccc--ccEEEEEEe
Q 043890 293 --NMLAYSSSKGSIRLIDLRQSALCDSHAI---LFEEQ----E------------APGSR--SFFTEII--ASISDIKFA 347 (509)
Q Consensus 293 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~----~------------~~~~~--~~~~~~~--~~i~~~~~s 347 (509)
..++.++.+|.++++|.++++++..... .+... . .+... ..+.+.. ..-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 2788999999999999999986321000 00000 0 00000 0000000 011237888
Q ss_pred cCCCEEEEec----------------------------------------------CCeEEEEECCCCCCceEEEeeccc
Q 043890 348 KDGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 348 ~~~~~l~s~~----------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
|+..++++.. ++.|+.||+.+ ++.+-.+..+..
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~ 476 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVTI 476 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESSS
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCCC
Confidence 8877776531 26688889887 565555554332
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
.. ...+...+.+++.++.||.|+.||.++|+++- .++..
T Consensus 477 ~~----------------~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw-~~~~~ 515 (689)
T 1yiq_A 477 FN----------------GGTLSTAGNLVFEGSADGRVIAYAADTGEKLW-EQPAA 515 (689)
T ss_dssp CC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEEE-EEECS
T ss_pred cc----------------CccceECCCEEEEECCCCcEEEEECCCCccce-eeeCC
Confidence 11 33566678899999999999999999999987 55543
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=6.4e-10 Score=103.56 Aligned_cols=163 Identities=10% Similarity=0.077 Sum_probs=79.2
Q ss_pred CCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceE-EEEEeCCCCcEEEEEEcCCeEEEEECCCCcccC
Q 043890 239 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCD 316 (509)
Q Consensus 239 ~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 316 (509)
..++..++++ .||.|+.||.++++..... ... ....+. +..+. .+ ..+++++.++.|+.||.++++..+
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~------~~~-~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w 116 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKL------PFT-IPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQ 116 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEEC------SCC-HHHHHTTCSCC-------CCCCEEEEEEEEECCC------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeee------ecc-CccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEE
Confidence 3566677777 8999999999887654321 111 000110 01111 23 467788889999999999998532
Q ss_pred CceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCc
Q 043890 317 SHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSI 395 (509)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
.+..+ . ...++|++..+++++ ++.|+.||.++ ++.+..+......
T Consensus 117 ----~~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~------------- 162 (369)
T 2hz6_A 117 ----TLSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA------------- 162 (369)
T ss_dssp ------------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC-------------
T ss_pred ----EecCC-------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc-------------
Confidence 22211 0 123456777777765 59999999987 5555444332211
Q ss_pred cceeeEEEcCCC---CEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE-EEEcCCC
Q 043890 396 FDKFECCLSGDG---LRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR-QVQTPSR 450 (509)
Q Consensus 396 ~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~s~~~ 450 (509)
...+..+. ..+++++.||.|+.||..+|+.+- .+... .++.. ..+++++
T Consensus 163 ----~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W-~~~~~-~pv~~~~~~~~dg 215 (369)
T 2hz6_A 163 ----ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW-IQNYA-SPVVAFYVWQREG 215 (369)
T ss_dssp ----CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE-EEECS-SCEEEEEECTTSS
T ss_pred ----CccccCCccccceEEEECCCCEEEEEECCCCcEEE-EecCC-CceEEEEEecCCc
Confidence 22333332 456778899999999999998875 55533 34433 3444443
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.89 E-value=1.5e-06 Score=81.16 Aligned_cols=281 Identities=13% Similarity=0.068 Sum_probs=141.9
Q ss_pred CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC
Q 043890 52 GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 131 (509)
Q Consensus 52 ~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 131 (509)
+..|++++.++.|..+|..+++. ...+...... . .... ....+...- ..++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~-----------------------~W~~~~~~~~-~-~~~~-~~~~~~~~~---~~~~ 103 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKE-----------------------IWSVSLAEKD-G-WFSK-EPALLSGGV---TVSG 103 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE-----------------------EEEEECCC-----CCSC-CCCCEEEEE---EEET
T ss_pred CCEEEEEcCCCeEEEEEccCCce-----------------------eeeecCcccc-c-cccc-cCcccccCc---eEeC
Confidence 56777778889999999988876 3333221100 0 0000 001121111 2245
Q ss_pred ceEEEeeCCCeEEEEeccchhhhhhhccCCCCC--cccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCcccccc
Q 043890 132 ALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPS--KAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPT 209 (509)
Q Consensus 132 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 209 (509)
..++.++.++.|..+|..+++............ ....++.+ +.....+.+..+|
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v------------------------~v~~~~g~l~~~d 159 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLV------------------------LIHTSNGQLQALN 159 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEE------------------------EEECTTSEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEE------------------------EEEcCCCeEEEEE
Confidence 578888899999999999988665443321100 00001111 1122233455555
Q ss_pred ccccccceeeeeeeee--ecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCcc---CCCccceE
Q 043890 210 VTSNETSLVARCRRVY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM---EDLTEVIT 283 (509)
Q Consensus 210 ~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~i~ 283 (509)
..+.+........... ......+ .. .+..++.+ .++.+..+|.++++.........+... ........
T Consensus 160 ~~tG~~~W~~~~~~~~~~~~~~~~~----~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T 3q7m_A 160 EADGAVKWTVNLDMPSLSLRGESAP----TT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT 233 (376)
T ss_dssp TTTCCEEEEEECCC-----CCCCCC----EE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred CCCCcEEEEEeCCCCceeecCCCCc----EE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence 4333222111000000 0000111 11 13466677 889999999998876544311000000 00000000
Q ss_pred EEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-cCCeEE
Q 043890 284 SAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-DYMTLK 362 (509)
Q Consensus 284 ~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~ 362 (509)
..... + ..++.++.++.+..+|.++++..+ .... .....+... +..++.+ .++.+.
T Consensus 234 ~p~~~--~-~~v~~~~~~g~l~~~d~~tG~~~w----~~~~--------------~~~~~~~~~--~~~l~~~~~~g~l~ 290 (376)
T 3q7m_A 234 TPVVV--N-GVVFALAYNGNLTALDLRSGQIMW----KREL--------------GSVNDFIVD--GNRIYLVDQNDRVM 290 (376)
T ss_dssp CCEEE--T-TEEEEECTTSCEEEEETTTCCEEE----EECC--------------CCEEEEEEE--TTEEEEEETTCCEE
T ss_pred CcEEE--C-CEEEEEecCcEEEEEECCCCcEEe----eccC--------------CCCCCceEE--CCEEEEEcCCCeEE
Confidence 11111 2 467777889999999999887422 1111 123334333 4445544 458999
Q ss_pred EEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 363 LWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 363 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.+|..+ ++.+.......... .. .... .+..|+.++.+|.|+.+|..+|+.+.
T Consensus 291 ~~d~~t-G~~~w~~~~~~~~~-----------~~---~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 291 ALTIDG-GVTLWTQSDLLHRL-----------LT---SPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp EEETTT-CCEEEEECTTTTSC-----------CC---CCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEECCC-CcEEEeecccCCCc-----------cc---CCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999987 55544433111100 00 2222 35678889999999999999998775
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.85 E-value=3.5e-06 Score=73.07 Aligned_cols=207 Identities=13% Similarity=0.012 Sum_probs=124.1
Q ss_pred cCeEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 231 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
.....+.|++++.++++. . ++.|+++|+.+++....+ .+..+ .....+++. +.++.++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i------~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH------KMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE------ecCCC-cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 346799999987555554 3 689999999998755433 12111 122345555 32555555678999999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
|..+.+. +..+.... + .. ..+++||+.++.+. ++.|.++|..+ .+.+..+.......
T Consensus 92 D~~t~~v----~~~i~~g~-~----------~g---~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~--- 149 (266)
T 2iwa_A 92 DRRTLSN----IKNFTHQM-K----------DG---WGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGH--- 149 (266)
T ss_dssp ETTTTEE----EEEEECCS-S----------SC---CEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred ECCCCcE----EEEEECCC-C----------Ce---EEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCc---
Confidence 9998775 34443210 0 11 23556777666654 48999999987 56666665332110
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCC
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGS 466 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 466 (509)
.+...+.+.|. +|...+....++.|.+.|..+++.+. ++......-.. . ....
T Consensus 150 -------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~--~-~~~~--------------- 202 (266)
T 2iwa_A 150 -------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKL--I-DEGF--------------- 202 (266)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHH--H-HTTC---------------
T ss_pred -------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCccccc--c-cccc---------------
Confidence 01112266777 77655555568899999999999877 44421000000 0 0000
Q ss_pred CCCcccCCCcccccccceEEEEEcCCCcEEEEEec--CceEEE
Q 043890 467 DVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAAA--NSLYMY 507 (509)
Q Consensus 467 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~--~~i~v~ 507 (509)
.-....+.++|+|+++.|.+++. +.+++.
T Consensus 203 ------------~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 203 ------------RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp ------------TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred ------------cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 00134689999999987777765 666654
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.84 E-value=3.4e-09 Score=98.70 Aligned_cols=188 Identities=10% Similarity=0.036 Sum_probs=97.4
Q ss_pred CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC
Q 043890 51 TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN 130 (509)
Q Consensus 51 ~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 130 (509)
++..|++++.||.|+.||..+++. ...+.. . .+.+..+ ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-----------------------~W~~~~-~-------------~~~s~p~--~~~ 48 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-----------------------KWTLKE-D-------------PVLQVPT--HVE 48 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-----------------------EEEEEC-C-------------CSCCCC------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----------------------EEEecC-C-------------Cceecce--EcC
Confidence 577899999999999999999887 444443 2 1344444 457
Q ss_pred CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccc
Q 043890 131 GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTV 210 (509)
Q Consensus 131 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 210 (509)
+..+++++.||.|..||..+++.+......
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-------------------------------------------------- 78 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-------------------------------------------------- 78 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CCSEECSCC--------------------------------------------------
T ss_pred CCEEEEeCCCCEEEEEECCCCceeeeeecc--------------------------------------------------
Confidence 778888889999999999887643321100
Q ss_pred cccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC
Q 043890 211 TSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 289 (509)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 289 (509)
... .....++ +. .+..++++ .++.|+.||.++++.... +..+. ...++|
T Consensus 79 -~~~------------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~--------~~~~~----~~~~~p 128 (369)
T 2hz6_A 79 -IPE------------LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQT--------LSSAF----ADSLSP 128 (369)
T ss_dssp -HHH------------HHTTCSC----C------CCCCEEEEEEEEECCC------------------------------
T ss_pred -Ccc------------ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEE--------ecCCC----cccccc
Confidence 000 0000111 11 23456666 789999999998875432 22221 234556
Q ss_pred CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecC----CCEEEEecCCeEEEEE
Q 043890 290 THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKD----GRHILSRDYMTLKLWD 365 (509)
Q Consensus 290 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~s~~~~~i~iwd 365 (509)
++ ..+++++.|+.|+.||.++++..+. +... ......++.+ +.+++...++.|+.||
T Consensus 129 ~~-~~v~~~~~dg~v~a~d~~tG~~~W~----~~~~--------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d 189 (369)
T 2hz6_A 129 ST-SLLYLGRTEYTITMYDTKTRELRWN----ATYF--------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVD 189 (369)
T ss_dssp -----EEEEEEEEEEECCCSSSSSCCCE----EEEE--------------EECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred cC-CEEEEEecCCEEEEEECCCCCEEEe----Eecc--------------cccCccccCCccccceEEEECCCCEEEEEE
Confidence 66 7888899999999999999886442 1111 0111222332 4555545579999999
Q ss_pred CCCCCCceEEEe
Q 043890 366 INMDSGPVATFQ 377 (509)
Q Consensus 366 ~~~~~~~~~~~~ 377 (509)
..+ ++.+....
T Consensus 190 ~~t-G~~~W~~~ 200 (369)
T 2hz6_A 190 SES-GDVLWIQN 200 (369)
T ss_dssp TTT-CCEEEEEE
T ss_pred CCC-CcEEEEec
Confidence 987 56555544
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.81 E-value=3.7e-07 Score=83.87 Aligned_cols=255 Identities=9% Similarity=0.061 Sum_probs=135.0
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccC-Ccchhhccc
Q 043890 45 AIEFDKTGDHLATGD----------RGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSH-EPEFDYLKS 113 (509)
Q Consensus 45 ~v~~s~~~~~la~g~----------~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 113 (509)
.+.++||+++|+++. .++.|.+||..+.+. ...+..+ .+.|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-----------------------v~~I~v~~~~~~----- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF----- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-----------------------EEEEEETTSCSC-----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-----------------------EEEEECCCcccc-----
Confidence 699999999999886 368899999999887 3443221 0000
Q ss_pred hhhhccceeeEEEEcCCCceEEEeeC--CCeEEE--EeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCC
Q 043890 114 LEIEEKINKIRWCQTANGALFLLSTN--DKTIKF--WKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGG 189 (509)
Q Consensus 114 ~~~~~~v~~l~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 189 (509)
........+.+ +|||++++++.. +..+.+ +|..+ ....... . .....|+|+
T Consensus 121 -~~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~-----------------~~~~~p~g~ 175 (368)
T 1mda_H 121 -SVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--S-----------------CFHIHPGAA 175 (368)
T ss_dssp -CBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--S-----------------CCCCEEEET
T ss_pred -ccCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--C-----------------ceEEccCCC
Confidence 00012567888 999999998875 467888 99987 1111110 0 001112221
Q ss_pred CCcceecCCCCCCCcccccccccc---ccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCc-e
Q 043890 190 SPSKEFSFPPGGIPSLRLPTVTSN---ETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-S 264 (509)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~-~ 264 (509)
.. + +....++.+...++... +.+...... .+..-...+. . .+++..++.. . +.|.+.|+..... .
T Consensus 176 ~~---~-~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v 245 (368)
T 1mda_H 176 AT---H-YLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM 245 (368)
T ss_dssp TE---E-ECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE
T ss_pred eE---E-EEEcCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE
Confidence 11 0 01111222222222210 000000000 0001112222 3 4555555554 7 8999999875331 1
Q ss_pred eeEeeccCCccCCC---ccceEEEEEeCCCCcEEEEEEc---------CCeEEEEECCCCcccCCceeeeccccCCCCcc
Q 043890 265 FNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRS 332 (509)
Q Consensus 265 ~~~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
...+.+.......+ ......++++|++ +.++++.. ++.+.++|+.+.+. +..+...
T Consensus 246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v----v~~i~vg------- 313 (368)
T 1mda_H 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQT----SGPISNG------- 313 (368)
T ss_dssp ECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCE----EECCEEE-------
T ss_pred EEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeE----EEEEECC-------
Confidence 11110000000000 1111226899998 55554432 23566999999875 3444433
Q ss_pred ccccccccEEEEEEecCCC-EEEEec--CCeEEEEECCCCCCceEEEeeccc
Q 043890 333 FFTEIIASISDIKFAKDGR-HILSRD--YMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 333 ~~~~~~~~i~~~~~s~~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
.....++|+|||+ ++++.. ++.|.++|+.+ .+.+..+.....
T Consensus 314 ------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~ 358 (368)
T 1mda_H 314 ------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKG 358 (368)
T ss_dssp ------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred ------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCC
Confidence 2578899999998 455544 59999999997 677777765443
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.80 E-value=3.8e-07 Score=87.38 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=56.3
Q ss_pred cEEEEEEecCCCEEEEec--CCeEEEEECCCCCC-----------ceEEEeecccccccccccccCCCccceeeEEEcCC
Q 043890 340 SISDIKFAKDGRHILSRD--YMTLKLWDINMDSG-----------PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGD 406 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 406 (509)
...++.++|||+++++++ +++|.++|+.+... ....+....++ ..++|+|+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP----------------~h~aF~~d 341 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP----------------LHTAFDGR 341 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE----------------EEEEECTT
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc----------------ceEEECCC
Confidence 467799999999998875 49999999985210 11122111111 27899999
Q ss_pred CCEEEEeeCCCcEEEEeCCC----------CceeeeeeccCCCc
Q 043890 407 GLRVATGSYSNLFRVFGCAP----------GSTEATTLEASKNP 440 (509)
Q Consensus 407 ~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~~ 440 (509)
|...++.-.|++|.+||+.+ .+.+. .+..|..|
T Consensus 342 G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~-kidV~yqp 384 (595)
T 1fwx_A 342 GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKD-KLDVHYQP 384 (595)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEE-EEECSSCE
T ss_pred CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEE-Eeeccccc
Confidence 94444556799999999986 34444 66666544
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.75 E-value=5.6e-07 Score=82.38 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=91.4
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
+.++...+++.+++...++.|..+|.. ++..... ......+.++...+++ .+++ ++ +.|..+| .++
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PDG 204 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TTS
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CCC
Confidence 455566777775554478899999988 5543321 1123445667777776 5444 44 7899999 555
Q ss_pred cccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccC
Q 043890 313 ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEN 392 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (509)
+. ...+.... ..+.++...++|.+.+...++.+..+|.. +..+..+........
T Consensus 205 ~~----~~~~~~~~------------~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~~-------- 258 (330)
T 3hxj_A 205 TE----KWNFYAGY------------WTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIES-------- 258 (330)
T ss_dssp CE----EEEECCSS------------CCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCCS--------
T ss_pred cE----EEEEccCC------------cceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCccc--------
Confidence 43 12222111 35777888888887776666888888753 455544443322111
Q ss_pred CCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 393 DSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 393 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.+.+.+++. |..++.+|.|..+|. +++.+.
T Consensus 259 -------~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 259 -------SPVIGNTDT-IYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp -------CCEECTTSC-EEEECTTCEEEEECT-TSCEEE
T ss_pred -------cceEcCCCe-EEEecCCCCEEEECC-CCcEEE
Confidence 445555654 566888889999996 566554
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.74 E-value=2.9e-06 Score=78.49 Aligned_cols=213 Identities=11% Similarity=0.078 Sum_probs=126.2
Q ss_pred CCCCEEEEE--cCCeEEEEEccCCCceeeEee-ccCCccC-C-CccceEEEEEeCCCCcEEEEEEcC------CeEEEEE
Q 043890 240 SDGETFISA--DDLRINLWNLEISNQSFNIVD-VKPANME-D-LTEVITSAEFHPTHCNMLAYSSSK------GSIRLID 308 (509)
Q Consensus 240 ~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~-~~~~~~~-~-~~~~i~~l~~~~~~~~~l~~~~~d------g~i~vwd 308 (509)
.++++|++. .++.|+++|+.+.....++.. +++..+. . .......+.+.|++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 778887765 799999999975422122110 1111111 0 11245678889997 55565555 7899999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--------------------CCeEEEEECCC
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--------------------YMTLKLWDINM 368 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--------------------~~~i~iwd~~~ 368 (509)
..+.+. +..++....+ ..--..+.|+|+++.+++.. ..+|.+||+.+
T Consensus 171 ~~T~~v----~~~~~~~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 171 HYSFEP----LGKWEIDRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTTCCE----EEECCSBCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCeE----EEEEccCCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 998875 4555432111 01234578899999999874 48999999996
Q ss_pred CCCceEEEeec-ccccccccccccCCCccceeeE--EEcCCCCEEEEeeC------CCcEEEEeCCCCceeeeeeccCCC
Q 043890 369 DSGPVATFQVH-EYLRPKLCDLYENDSIFDKFEC--CLSGDGLRVATGSY------SNLFRVFGCAPGSTEATTLEASKN 439 (509)
Q Consensus 369 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~ 439 (509)
.+.+.++... .+... ..+ +|+|++++++++++ +++|.+|..+.++... .+
T Consensus 238 -~k~~~tI~vg~~g~~P--------------~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--~~---- 296 (462)
T 2ece_A 238 -RKRIHSLTLGEENRMA--------------LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA--EK---- 296 (462)
T ss_dssp -TEEEEEEESCTTEEEE--------------EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE--EE----
T ss_pred -CcEeeEEecCCCCCcc--------------ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE--EE----
Confidence 5666666553 11110 034 45999999887774 5688888776543221 00
Q ss_pred ceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCccccc---ccceEEEEEcCCCcEEEEEec--CceEEEeC
Q 043890 440 PMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDF---TTKLLHLAWHPTENSIACAAA--NSLYMYYA 509 (509)
Q Consensus 440 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~la~~~~--~~i~v~~~ 509 (509)
.+...+ ... . ..+......| ......+.+|||+++|.++.. +.|.+|++
T Consensus 297 ---vIdi~~-~~v-----------~------~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 297 ---VIEIPA-EPL-----------E------GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp ---EEEECC-EEC-----------C------SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred ---EEeCCC-ccc-----------c------ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 011000 000 0 0000000001 134688999999999999887 88888863
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.72 E-value=5.3e-06 Score=70.94 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=105.6
Q ss_pred eeeeeeecccccCeEEEEECCCCCEEEEE-cCC--eEEEEEccCCCceeeEeeccCCccCCCccce--EEEEEeCCCCcE
Q 043890 220 RCRRVYAHAHDYHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVI--TSAEFHPTHCNM 294 (509)
Q Consensus 220 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~~~~~~~~ 294 (509)
+..+.+......-...+.|+ ++.++.+. .+| .|+.+|+++++...++ .+. ... -.++.. +.++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~------~l~---~~~FgeGit~~--g~~l 99 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI------ELG---KRYFGEGISDW--KDKI 99 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE------ECC---TTCCEEEEEEE--TTEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE------ecC---CccceeEEEEe--CCEE
Confidence 44455422233345789998 56555554 555 8999999998765443 121 122 234443 4255
Q ss_pred EEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCce
Q 043890 295 LAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPV 373 (509)
Q Consensus 295 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~ 373 (509)
.+..-.++.+.+||..+.+. +..+.... ....+++|++.|+.++ .+.|.++|..+ .+.+
T Consensus 100 y~ltw~~~~v~v~D~~t~~~----~~ti~~~~---------------eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~ 159 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQ----VRSFNYDG---------------EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPV 159 (262)
T ss_dssp EEEESSSSEEEEEETTTCCE----EEEEECSS---------------CCCCEEECSSCEEECCSSSEEEEECTTT-CSEE
T ss_pred EEEEeeCCEEEEEECccCcE----EEEEECCC---------------CceEEecCCCEEEEECCCCeEEEEcCCC-CeEE
Confidence 55555689999999999875 44444321 1123345777776654 48899999997 5666
Q ss_pred EEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 374 ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
..+....... .+..+..+.|. +|+..+..-.++.|.+.|..+|+.+. ++..
T Consensus 160 ~~I~V~~~g~----------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~-~Id~ 210 (262)
T 3nol_A 160 RTITVTAHGE----------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG-IIDL 210 (262)
T ss_dssp EEEECEETTE----------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE-EEEC
T ss_pred EEEEeccCCc----------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE-EEEC
Confidence 6665432110 01111146665 77766555568899999999999887 5543
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.72 E-value=3.9e-06 Score=84.67 Aligned_cols=77 Identities=5% Similarity=-0.075 Sum_probs=46.4
Q ss_pred CCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCCC
Q 043890 52 GDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 131 (509)
Q Consensus 52 ~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 131 (509)
+..|++++.++.|..+|..+++. +..+..+.... ..........-..+.. ++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~-----------------------~W~~~~~~~~~-~~~~~~~~~~~~~~~~----~~ 121 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL-----------------------IWKYDPQSDRH-RAGEACCDAVNRGVAV----WK 121 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE-----------------------EEEECCCCCGG-GGGGCTTCSCCCCCEE----ET
T ss_pred CCEEEEEcCCCeEEEEECCCCce-----------------------eEEEcCCCCcc-ccccccccCCCCccEE----EC
Confidence 55677777788999999998887 45544332100 0000000000112333 34
Q ss_pred ceEEEeeCCCeEEEEeccchhhhhh
Q 043890 132 ALFLLSTNDKTIKFWKVQEKKVKKI 156 (509)
Q Consensus 132 ~~l~s~~~dg~i~vwd~~~~~~~~~ 156 (509)
..+++++.|+.|..+|..+|+.+..
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeee
Confidence 5788888999999999999986554
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=2.7e-06 Score=78.27 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=103.1
Q ss_pred cCeEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-----CC
Q 043890 231 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG 302 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-----dg 302 (509)
.....++++++|+++++. . ++.++||.+.+++ ........ .....+-..+.++++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 568899999999999886 2 4535666665332 21110000 1122355788999999997 66665443 57
Q ss_pred eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE-EEec----CCeEEEEECCCCCCceEEEe
Q 043890 303 SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI-LSRD----YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 303 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~----~~~i~iwd~~~~~~~~~~~~ 377 (509)
.|.+||+.++++ ++.+...... ..+...+..+++++++..+ ++.. ++.|.+||+.+ ++....+.
T Consensus 94 ~i~~~d~~tg~~----~~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~ 162 (343)
T 2qe8_A 94 KLVAWDTLNNQL----SRVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ 162 (343)
T ss_dssp EEEEEETTTTEE----EEEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred eEEEEECCCCeE----EEEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence 899999998874 3444322110 0112356889999865444 4432 48999999985 45444443
Q ss_pred ecccccc-----ccc--ccc---cCCC----ccceeeEEEcCCCCEEEEeeCCC-cEEEEe
Q 043890 378 VHEYLRP-----KLC--DLY---ENDS----IFDKFECCLSGDGLRVATGSYSN-LFRVFG 423 (509)
Q Consensus 378 ~~~~~~~-----~~~--~~~---~~~~----~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~ 423 (509)
.|..... ... .++ .... ...++.++|+||++.|+.+..++ .|+.++
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 3211110 000 000 0000 01235899999999888887766 444443
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.71 E-value=1.1e-06 Score=80.40 Aligned_cols=209 Identities=10% Similarity=0.069 Sum_probs=114.4
Q ss_pred CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCcee
Q 043890 242 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAI 320 (509)
Q Consensus 242 ~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 320 (509)
+..+..+ .++.|..+|.+ ++..... ......+.++...+++ . +..++.++.|..+|.. ++. ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~----~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTE----KW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCE----EE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCE----eE
Confidence 4455666 78899999987 5543322 1123345556677676 4 6667788999999988 653 22
Q ss_pred eeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccCCCccceee
Q 043890 321 LFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFE 400 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 400 (509)
.+.... ..+.++...+++.+.+.. +.|..+| .+ +.....+......+ .+
T Consensus 171 ~~~~~~------------~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~~ 219 (330)
T 3hxj_A 171 RFKTND------------AITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------TR 219 (330)
T ss_dssp EEECSS------------CCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------SC
T ss_pred EEecCC------------CceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------ec
Confidence 222111 245666777788866655 8899999 53 44444443322221 26
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCccc--
Q 043890 401 CCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSF-- 478 (509)
Q Consensus 401 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 478 (509)
+...++|.+ ..++.++.|..++. +++.+. .+.........+...+++. ..++. ....+...+..+..+
T Consensus 220 ~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~g~-l~v~t------~~ggl~~~d~~g~~~~~ 289 (330)
T 3hxj_A 220 PAISEDGTI-YVTSLDGHLYAINP-DGTEKW-RFKTGKRIESSPVIGNTDT-IYFGS------YDGHLYAINPDGTEKWN 289 (330)
T ss_dssp CEECTTSCE-EEEETTTEEEEECT-TSCEEE-EEECSSCCCSCCEECTTSC-EEEEC------TTCEEEEECTTSCEEEE
T ss_pred eEECCCCeE-EEEcCCCeEEEECC-CCCEeE-EeeCCCCccccceEcCCCe-EEEec------CCCCEEEECCCCcEEEE
Confidence 778787764 45777888888885 455554 4443333333333322221 11110 000111112112111
Q ss_pred -c-cccceEEEEEcCCCcEEEEEecCceEEE
Q 043890 479 -D-FTTKLLHLAWHPTENSIACAAANSLYMY 507 (509)
Q Consensus 479 -~-~~~~i~~~~~~p~~~~la~~~~~~i~v~ 507 (509)
. -...+.++...+++.+.+.+..+.+++.
T Consensus 290 ~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred EEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 0 1355778888888876665555666554
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.71 E-value=3.8e-06 Score=71.79 Aligned_cols=173 Identities=12% Similarity=-0.011 Sum_probs=106.8
Q ss_pred eeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEE
Q 043890 220 RCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 298 (509)
Q Consensus 220 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~ 298 (509)
+..+.+......-...+.|+. +.++.+. .+|.|+.+|+++++...++ +.+ ...--.+++. +.++.+..
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~~--g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLASD--GERLYQLT 112 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEEC--SSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEEe--CCEEEEEE
Confidence 444454333334457888873 4445555 7889999999998765443 211 1111234444 32566666
Q ss_pred EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 299 SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 299 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
-.++.+.+||..+.+. +.++.... .-..++ +|++.|+.++ .+.|+++|..+ .+.+..+.
T Consensus 113 w~~~~v~V~D~~Tl~~----~~ti~~~~-------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~ 172 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQR----ERTTRYSG-------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQ 172 (268)
T ss_dssp SSSCEEEEEETTTTEE----EEEEECSS-------------CCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEE
T ss_pred ccCCEEEEEECCcCcE----EEEEeCCC-------------ceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEE
Confidence 6789999999999875 44444321 112333 5677777765 59999999997 56776665
Q ss_pred ecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 378 VHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
...... .+..+..+.|. +|+..+....++.|.+.|..+|+.+. ++.
T Consensus 173 V~~~g~----------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~-~Id 218 (268)
T 3nok_A 173 VKLRGQ----------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG-VID 218 (268)
T ss_dssp CEETTE----------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE-EEE
T ss_pred eCCCCc----------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE-EEE
Confidence 433211 11112256665 77666555568899999999999887 544
No 240
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=2.8e-06 Score=85.46 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=67.3
Q ss_pred CCeEEEEEccCCCceeeEeeccCCc---------------cC---------CCccceEEEEEeCCCCcEEEEEEcCC---
Q 043890 250 DLRINLWNLEISNQSFNIVDVKPAN---------------ME---------DLTEVITSAEFHPTHCNMLAYSSSKG--- 302 (509)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~---------~~~~~i~~l~~~~~~~~~l~~~~~dg--- 302 (509)
++.|+.+|.++++...+.....+.. .. ........++++|++ .+++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccc
Confidence 6889999998888665442211110 00 111112357889987 7777776654
Q ss_pred ----------------eEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCC---CEEEEec-CCeEE
Q 043890 303 ----------------SIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG---RHILSRD-YMTLK 362 (509)
Q Consensus 303 ----------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~s~~-~~~i~ 362 (509)
.|..+|.++++..+. ++...... -.+.. .....-+....+| ..++.++ +|.++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~----~~~~~~d~--wd~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~ 340 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWH----YQETPGDN--WDYTS-TQPMILADIKIAGKPRKVILHAPKNGFFF 340 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEE----EESSTTCC--SCCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEE----EecCCCcc--ccccc-CCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence 599999999986432 22110000 00000 0122233444577 5677775 49999
Q ss_pred EEECCCCCCceEEEe
Q 043890 363 LWDINMDSGPVATFQ 377 (509)
Q Consensus 363 iwd~~~~~~~~~~~~ 377 (509)
++|..+ ++++..+.
T Consensus 341 ~lD~~t-G~~l~~~~ 354 (677)
T 1kb0_A 341 VLDRTN-GKFISAKN 354 (677)
T ss_dssp EEETTT-CCEEEEEE
T ss_pred EEECCC-CCEecccc
Confidence 999997 67665554
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=4.6e-06 Score=75.96 Aligned_cols=155 Identities=11% Similarity=0.030 Sum_probs=92.1
Q ss_pred eEEEEECC-CCCEEEEE-c-----------------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCc
Q 043890 233 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 293 (509)
Q Consensus 233 v~~i~~~~-~~~~l~~~-~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 293 (509)
...+++.+ +|+++++- . ++.|..||..+++... + ...-.....++++|++ +
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~--------~~~~~~p~gia~~~dg-~ 197 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL-L--------LKELHVPGGAEVSADS-S 197 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE-E--------EEEESCCCEEEECTTS-S
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE-e--------ccCCccCcceEECCCC-C
Confidence 66788999 88877764 3 2678888876543211 1 0111234579999998 6
Q ss_pred EEEEE-EcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-----------CCeE
Q 043890 294 MLAYS-SSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-----------YMTL 361 (509)
Q Consensus 294 ~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-----------~~~i 361 (509)
.|..+ ..++.|.+|++..... .....+... .+ ...+++.++|++.++.. .+.|
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~--~~~~~~~~~------------~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKK--GTAEVLVKI------------PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTT--TCEEEEEEC------------SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcC--CccceEEeC------------CC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 55554 5568999999886431 111222211 12 67789999999777642 2567
Q ss_pred EEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 362 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
..+|.. ++.+..+....+.. ...+..+++ .++++.++...++.|..+++..
T Consensus 263 ~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 263 IKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 777764 46666665433210 000115555 4666666666788999998863
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.65 E-value=3.6e-05 Score=69.39 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=78.3
Q ss_pred EEECCCCCEEEEE-cCCeEEEEEccCCCceeeEee--ccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC-
Q 043890 236 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ- 311 (509)
Q Consensus 236 i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~- 311 (509)
++..+++..+++- .++.|+.+|...++....... +........-.....+ ++++..++++-...+.|..||+..
T Consensus 122 ~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~ 199 (306)
T 2p4o_A 122 ITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST 199 (306)
T ss_dssp EEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT
T ss_pred ccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC
Confidence 3444555445544 588888888764321111000 0000011111234455 777734455555678999999875
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLY 390 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (509)
+++. ....+... .....++++++|++.++.. .+.|.++|.. ++.......... .
T Consensus 200 g~~~--~~~~~~~~-------------~~P~gi~vd~dG~l~va~~~~~~V~~~~~~--G~~~~~~~~~~~-~------- 254 (306)
T 2p4o_A 200 DKPG--EPEIFVEQ-------------TNIDDFAFDVEGNLYGATHIYNSVVRIAPD--RSTTIIAQAEQG-V------- 254 (306)
T ss_dssp SCBC--CCEEEEES-------------CCCSSEEEBTTCCEEEECBTTCCEEEECTT--CCEEEEECGGGT-C-------
T ss_pred CCCC--ccEEEecc-------------CCCCCeEECCCCCEEEEeCCCCeEEEECCC--CCEEEEeecccc-c-------
Confidence 3321 11222110 2356689999998777654 4889999865 333221111111 0
Q ss_pred cCCCccceeeEEEc---CCCCEEEEeeCCC
Q 043890 391 ENDSIFDKFECCLS---GDGLRVATGSYSN 417 (509)
Q Consensus 391 ~~~~~~~v~~~~~s---~~~~~l~~~~~dg 417 (509)
....+++|. |+++.|+.++..+
T Consensus 255 -----~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 -----IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -----TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -----CCceEEEEecccCCCCEEEEECCCC
Confidence 012288998 8887777666543
No 243
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.62 E-value=3.1e-05 Score=65.68 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=104.3
Q ss_pred eeeeeeecccccCeEEEEECCCCCEEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEE
Q 043890 220 RCRRVYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 296 (509)
Q Consensus 220 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~ 296 (509)
+.++.+......-...+.|+. +.++.+. . +..|+.+|+++++...++ .+..+. .--.++.. +.++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~~-fgeGi~~~--~~~ly~ 79 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPPY-FGAGIVAW--RDRLIQ 79 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTTC-CEEEEEEE--TTEEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCCc-ceeEEEEe--CCEEEE
Confidence 344444233335577899986 4444444 4 459999999998765443 121111 11234444 325666
Q ss_pred EEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEE
Q 043890 297 YSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVAT 375 (509)
Q Consensus 297 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~ 375 (509)
..-.++.+.+||..+.++ +.++.... .-..+ ++++..|+.++ .+.|.++|..+ .+.+..
T Consensus 80 ltw~~~~v~v~D~~tl~~----~~ti~~~~-------------~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t-~~~~~~ 139 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTP----RARFRYPG-------------EGWAL--TSDDSHLYMSDGTAVIRKLDPDT-LQQVGS 139 (243)
T ss_dssp EESSSSEEEEEETTTTEE----EEEEECSS-------------CCCEE--EECSSCEEEECSSSEEEEECTTT-CCEEEE
T ss_pred EEeeCCEEEEEECCcCcE----EEEEeCCC-------------CceEE--eeCCCEEEEECCCCeEEEEeCCC-CeEEEE
Confidence 666789999999999875 44444321 11233 35666666553 48999999997 566666
Q ss_pred EeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 376 FQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
+....... .+..+..+.+. +|+..+....+..|.+.|..+|+.+. .+.
T Consensus 140 I~V~~~g~----------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~-~id 187 (243)
T 3mbr_X 140 IKVTAGGR----------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA-WID 187 (243)
T ss_dssp EECEETTE----------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE-EEE
T ss_pred EEEccCCc----------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE-EEE
Confidence 65432210 11112245554 67666555567899999999999887 544
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.61 E-value=0.00084 Score=69.33 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=134.5
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
..|.++...++|++.+...++-|..|+..+.... .+...+..-.-....|.++...+++ + |-.|+.++-|..||..
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK--NIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPI 385 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE--EECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTT
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce--EEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCC
Confidence 4588999999988766656667888887654311 1100000011124568999998887 4 5567788789999988
Q ss_pred CCcccCCceeeecccc-CCCCccccccccccEEEEEEecCCC-EEEEecCCeEEEEECCCCCCceEEEeecccccccccc
Q 043890 311 QSALCDSHAILFEEQE-APGSRSFFTEIIASISDIKFAKDGR-HILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
++.. ..+.... .+. ..+ ....|.++...++|+ +.+...++.|.+||..+ + ....+......
T Consensus 386 ~~~~-----~~~~~~~~~~~--~~l--~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~-~~~~~~~~~~~------ 448 (795)
T 4a2l_A 386 TQRF-----TSYTLQEDESA--RGI--GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-G-QVENFNQRNSQ------ 448 (795)
T ss_dssp TCCE-----EEECCC--------CC--SCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-C-CEEEECTTTSC------
T ss_pred CCcE-----EEEecCCCCcc--cCC--CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-C-cEEEeecCCCC------
Confidence 7652 2222110 000 000 114689999999998 44443347799999885 3 33333221100
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc------CCCceeEEEEcCCCCCCcc---ccee
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA------SKNPMRRQVQTPSRPSRSL---SSIT 459 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~~~~---~~~~ 459 (509)
.... .|.++...++|++.+. +. +.|.+|+..+++... .... ....+.++...+++.- .+ .++.
T Consensus 449 -l~~~---~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~Gl~ 520 (795)
T 4a2l_A 449 -LVNE---NVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTT-IEKEKDGTPVVSKQITTLFRDSHKRL-WIGGEEGLS 520 (795)
T ss_dssp -CSCS---CEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEE-CCBCTTCCBCCCCCEEEEEECTTCCE-EEEESSCEE
T ss_pred -cCCC---eeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEE-ccccccccccCCceEEEEEECCCCCE-EEEeCCceE
Confidence 0011 2347888888886654 44 468899988776543 2111 2345677766654432 11 1222
Q ss_pred eEeecCCCCCcccCC-CcccccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 460 RVVRRGSDVPGVDTN-GNSFDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 460 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
+.-...... ..... .........|.++...+++.+.+.. .++++.|+
T Consensus 521 ~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~d 568 (795)
T 4a2l_A 521 VFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REGFYCFN 568 (795)
T ss_dssp EEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSCEEEEE
T ss_pred EEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCCceeEC
Confidence 111111111 11000 0000123568999999998765544 34788776
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.58 E-value=0.00065 Score=70.13 Aligned_cols=251 Identities=9% Similarity=0.040 Sum_probs=137.1
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccC-CccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
..|.++...++|.+.+...+ -|.+||..+... ..+. ..+ ....-....|.++...++| .|-.|+.++-|..|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~-~~~~-~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSF-ASYS-SNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHP 337 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEE-EEEC-CCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeE-EEEe-cCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCC
Confidence 45889999988887666554 488888775432 1110 000 0111134679999999987 4666777778999987
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccc-cccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRP-KLCD 388 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 388 (509)
..... ..+...... ..+ ....|.++...++|.+-+...++-|..||..+ .....+........ .+
T Consensus 338 ~~~~~-----~~~~~~~~~---~~l--~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~l-- 403 (795)
T 4a2l_A 338 IRNRF-----KNIRNIPYK---NSL--SDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT--QRFTSYTLQEDESARGI-- 403 (795)
T ss_dssp GGGSS-----EEECCCTTS---SSC--SCSSEEEEEECTTSCEEEEESSSCEEEECTTT--CCEEEECCC------CC--
T ss_pred Ccccc-----eEEcCCCCC---CCC--CCCeeEEEEECCCCCEEEEECCCCeEEEcCCC--CcEEEEecCCCCcccCC--
Confidence 76542 222211100 000 12469999999998877655556799999875 23333321110000 00
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeec----cCCCceeEEEEcCCCCCCcccc--eeeEe
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLE----ASKNPMRRQVQTPSRPSRSLSS--ITRVV 462 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~~~~~--~~~~~ 462 (509)
....|.++...++++.|..|+.++-|..||..+++... ... .+...+.++...+++.- .++. -...+
T Consensus 404 -----~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~Gl~~~ 476 (795)
T 4a2l_A 404 -----GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNL-WLGTLSALVRF 476 (795)
T ss_dssp -----SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCE-EEEESSCEEEE
T ss_pred -----CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCE-EEEecCceeEE
Confidence 00123478888888845667887889999998876543 211 12345677766554331 1111 11111
Q ss_pred ecC-CCCCcccCCCcc-cccccceEEEEEcCCCcEEEEEecCceEEEe
Q 043890 463 RRG-SDVPGVDTNGNS-FDFTTKLLHLAWHPTENSIACAAANSLYMYY 508 (509)
Q Consensus 463 ~~~-~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~la~~~~~~i~v~~ 508 (509)
+.. ............ -.....|.++...+++.+.+... +++++|+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK 523 (795)
T ss_dssp ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence 111 111000000000 00125688999999987666554 7788775
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.56 E-value=2.4e-05 Score=78.64 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=104.1
Q ss_pred EEEECCCCCEEEEE-cCC-------------------eEEEEEccCCCceeeEeeccCCccCCCc-------cceEEEEE
Q 043890 235 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF 287 (509)
Q Consensus 235 ~i~~~~~~~~l~~~-~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~l~~ 287 (509)
.++++++..+++.+ .++ .|.-+|.++++...... ...|. .+.....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence 46788888888777 655 48999999988665431 11121 23333333
Q ss_pred eCCCC--cEEEEEEcCCeEEEEECCCCcccCCce-------eeeccccC-----CCCc------cccccccc--cEEEEE
Q 043890 288 HPTHC--NMLAYSSSKGSIRLIDLRQSALCDSHA-------ILFEEQEA-----PGSR------SFFTEIIA--SISDIK 345 (509)
Q Consensus 288 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~-----~~~~------~~~~~~~~--~i~~~~ 345 (509)
..++. ..++.++.+|.+.++|..++++..... ..+..... .... ..+.+..+ .-..++
T Consensus 308 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a 387 (668)
T 1kv9_A 308 NIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS 387 (668)
T ss_dssp EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred ccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence 34551 268899999999999999998641100 00000000 0000 00000000 011267
Q ss_pred EecCCCEEEEe------------------------------------cC-CeEEEEECCCCCCceEEEeecccccccccc
Q 043890 346 FAKDGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 346 ~s~~~~~l~s~------------------------------------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
++|+..+++.. .. +.|..||+.+ ++.+-.........
T Consensus 388 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~~----- 461 (668)
T 1kv9_A 388 FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHWN----- 461 (668)
T ss_dssp EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSCC-----
T ss_pred ECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCCc-----
Confidence 77776655531 12 7788999987 55555444332110
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS 437 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 437 (509)
...+...+.+++.++.|+.++.||.++|+.+. .++..
T Consensus 462 -----------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~-~~~~~ 498 (668)
T 1kv9_A 462 -----------GGTLSTAGNLVFQGTAAGQMHAYSADKGEALW-QFEAQ 498 (668)
T ss_dssp -----------CCEEEETTTEEEEECTTSEEEEEETTTCCEEE-EEECS
T ss_pred -----------CceeEeCCCEEEEECCcccchhhhhhcChhhe-EecCC
Confidence 33455578889999999999999999999887 66544
No 247
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.56 E-value=2.5e-05 Score=72.82 Aligned_cols=268 Identities=9% Similarity=0.053 Sum_probs=137.4
Q ss_pred CCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhccceeeEEEEcCC
Q 043890 51 TGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTAN 130 (509)
Q Consensus 51 ~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 130 (509)
++..+++++.++.|..+|..+++. ...+.... ........ .
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~-----------------------~W~~~~~~------------~~~~~p~~----~ 142 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTV-----------------------AWQTKVAG------------EALSRPVV----S 142 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS------------CCCSCCEE----E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----------------------EEEEeCCC------------ceEcCCEE----E
Confidence 355677788899999999998876 33333222 11122222 2
Q ss_pred CceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCCCCCCCccccccc
Q 043890 131 GALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFPPGGIPSLRLPTV 210 (509)
Q Consensus 131 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 210 (509)
+..++.++.++.|..+|..+++.................. .... .+ ..++.+...+.+..+|.
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----------~~~~-~~------~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----------APTT-AF------GAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----------CCEE-ET------TEEEECCTTTEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----------CcEE-EC------CEEEEEcCCCEEEEEEC
Confidence 3477788889999999999888665543321110000000 0000 00 11112223344555554
Q ss_pred cccccceeeeeeeeeecccc--cCeEEEEECC--CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEE
Q 043890 211 TSNETSLVARCRRVYAHAHD--YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 285 (509)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~--~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 285 (509)
.+.+.......... .+.. ..+..+...| .+..++.+ .++.+..+|.++++..... .. .....+
T Consensus 206 ~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~------~~----~~~~~~ 273 (376)
T 3q7m_A 206 EQGQMIWQQRISQA--TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR------EL----GSVNDF 273 (376)
T ss_dssp TTCCEEEEEECCC-------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE------CC----CCEEEE
T ss_pred CCCcEEEEEecccC--CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec------cC----CCCCCc
Confidence 43322211100000 0000 0000000111 23556666 7899999999988755432 11 123344
Q ss_pred EEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEE
Q 043890 286 EFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLW 364 (509)
Q Consensus 286 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iw 364 (509)
... + ..++.++.++.|..+|..+++..+ ...... . ..+...... +..|+.++ +|.++++
T Consensus 274 ~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w----~~~~~~--~---------~~~~~~~~~--~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 274 IVD--G-NRIYLVDQNDRVMALTIDGGVTLW----TQSDLL--H---------RLLTSPVLY--NGNLVVGDSEGYLHWI 333 (376)
T ss_dssp EEE--T-TEEEEEETTCCEEEEETTTCCEEE----EECTTT--T---------SCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred eEE--C-CEEEEEcCCCeEEEEECCCCcEEE----eecccC--C---------CcccCCEEE--CCEEEEEeCCCeEEEE
Confidence 443 3 567778889999999999987422 111000 0 111122222 34555554 5999999
Q ss_pred ECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEe
Q 043890 365 DINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 423 (509)
Q Consensus 365 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 423 (509)
|..+ ++.+.........+.. .... .+..|+.++.+|.|+.|+
T Consensus 334 d~~t-G~~~~~~~~~~~~~~~--------------~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 334 NVED-GRFVAQQKVDSSGFQT--------------EPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTT-CCEEEEEECCTTCBCS--------------CCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ECCC-CcEEEEEecCCCccee--------------CCEE--ECCEEEEEeCCCEEEEEe
Confidence 9997 6666555542221110 1222 245677889999999987
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.56 E-value=9.2e-05 Score=65.19 Aligned_cols=119 Identities=10% Similarity=0.083 Sum_probs=71.3
Q ss_pred CeEEEEECCCCCEEEEE--c--CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEE
Q 043890 232 HINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 307 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vw 307 (509)
....++++|++..|..+ . .+.|..++++.... ..+ ....-.....+++++++..++++-...+.|.++
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~-------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RIL-------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEE-------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEE-------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 35788999976655544 3 47888888864321 111 011224578999999873455555567899999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECCCCCCceEEEee
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~~~~~~~~~~~~ 378 (509)
|+..... ...+... .....++.. +..|+.+ . .+.|..+|..+ ++.+..+..
T Consensus 195 ~~~g~~~----~~~~~~~-------------~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~ 247 (267)
T 1npe_A 195 NPAQPGR----RKVLEGL-------------QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHP 247 (267)
T ss_dssp ETTEEEE----EEEEECC-------------CSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEEEEEECC
T ss_pred ecCCCce----EEEecCC-------------CCceEEEEe--CCEEEEEECCCCeEEEEeCCC-CCceEEEcc
Confidence 9976432 1111111 123556654 4445544 3 38999999986 566666643
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.54 E-value=0.00017 Score=64.98 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=90.4
Q ss_pred CeEEEEECCCCCEEEEE-cCC--eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
....+++.++|+++++. ... .|..++..+++. ..+... . .......++..+++ ..+++-..++.|.++|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 47789999999976665 332 466677665542 222111 1 11223445555554 5555444688999999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCc--eEEEeecccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEYLRP 384 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~--~~~~~~~~~~~~ 384 (509)
...++.. +......-.. ......-...+.+ +++++.|+.+. .+.|..||+...+.. ...+..... .
T Consensus 145 ~~~~~~~---v~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~-P- 214 (306)
T 2p4o_A 145 VVQPSGS---IWLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN-I- 214 (306)
T ss_dssp TTTTEEE---EEEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC-C-
T ss_pred CCCCcEe---EEEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCC-C-
Confidence 8764210 1100000000 0000001234455 88888777764 389999998742221 122211100 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCce
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
..++++++|++.++....+.|.+++.. |+.
T Consensus 215 --------------~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 215 --------------DDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp --------------SSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred --------------CCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 178999999987777778899999975 654
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.54 E-value=1.1e-05 Score=69.93 Aligned_cols=164 Identities=7% Similarity=-0.031 Sum_probs=94.6
Q ss_pred EEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 235 SISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 235 ~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
.+++. ++.|. +. .++.+.++|..+.+...++ ... ... ...+++++ +.++++..++.|.++|..+.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i------~~g-~~~---g~glt~Dg-~~l~vs~gs~~l~viD~~t~ 136 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNF------THQ-MKD---GWGLATDG-KILYGSDGTSILYEIDPHTF 136 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEE------ECC-SSS---CCEEEECS-SSEEEECSSSEEEEECTTTC
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEE------ECC-CCC---eEEEEECC-CEEEEECCCCeEEEEECCCC
Confidence 34444 44454 44 7999999999987654432 111 011 23355677 55555567899999999887
Q ss_pred cccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeeccccccccccccc
Q 043890 313 ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE 391 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
+. ...+...... .....++.+.|. +|+..+... .+.|.+.|..+ ++.+..+............ .
T Consensus 137 ~v----~~~I~Vg~~~-------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~--~ 201 (266)
T 2iwa_A 137 KL----IKKHNVKYNG-------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDE--G 201 (266)
T ss_dssp CE----EEEEECEETT-------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHT--T
T ss_pred cE----EEEEEECCCC-------cccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEEEECCCcccccccc--c
Confidence 64 3333321100 001246778888 776555543 48999999997 7777777643110000000 0
Q ss_pred CCCccceeeEEEcCCCCEE-EEeeCCCcEEEEeCCC
Q 043890 392 NDSIFDKFECCLSGDGLRV-ATGSYSNLFRVFGCAP 426 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~ 426 (509)
.........++|+|+++.| +++...+.++..++..
T Consensus 202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 0000011289999998654 5555678888888764
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.52 E-value=0.00029 Score=64.66 Aligned_cols=170 Identities=10% Similarity=0.022 Sum_probs=100.4
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-CeEEEEEC
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-g~i~vwd~ 309 (509)
...+++.+.+..|+.+ ..+.|.+.+++..... .+ ....-.....++++|.+..++.+-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4578888765555444 6789999998754321 11 112234568999999763555555455 78999988
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
..... ..+.... ....+.++++|++..|+.++ .+.|..+|+.. ......+......
T Consensus 190 dG~~~-----~~~~~~~-----------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~----- 247 (349)
T 3v64_C 190 DGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPH----- 247 (349)
T ss_dssp TSCSC-----EESCCSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSS-----
T ss_pred CCCCc-----EEEEECC-----------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCC-----
Confidence 76431 2221111 13578999999888777764 38899999874 2222222211111
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEE
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQ 444 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 444 (509)
-+.+++ ..+.+..+-...+.|..++..+|+.+. ++.........+
T Consensus 248 ----------P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~-~i~~~~~~p~gi 292 (349)
T 3v64_C 248 ----------PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE-IIRNKLHFPMDI 292 (349)
T ss_dssp ----------EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE-EEECSCSCCCCE
T ss_pred ----------ceEEEE-ECCEEEEecCCCCeEEEEEccCCCccE-EeccCCCCCceE
Confidence 116677 344555555567889888877777666 554333333333
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.49 E-value=0.00018 Score=67.09 Aligned_cols=172 Identities=10% Similarity=0.018 Sum_probs=100.6
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-CeEEEEEC
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-g~i~vwd~ 309 (509)
...+++.+.+..|+.. ..+.|.+.+++..... .+ +...-.....++++|.+..++++-... +.|..+++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-Ee-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 3467787765555544 5778888887743321 11 112234568999999763444444444 78999988
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
..... ..+.... ....+.++++|++..|+.++ .+.|..+|+.. ......+......
T Consensus 233 dG~~~-----~~~~~~~-----------~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~----- 290 (386)
T 3v65_B 233 DGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPH----- 290 (386)
T ss_dssp TSCSC-----EEEECSS-----------CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSS-----
T ss_pred CCCCc-----EEEEECC-----------CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCC-----
Confidence 76432 2221111 13578999998877777764 38899999874 2222222211111
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEE
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQ 446 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 446 (509)
-+.+++ ..+.++.+-...+.|..++..+|+.+. ++.........+++
T Consensus 291 ----------P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~-~i~~~~~~p~gi~v 337 (386)
T 3v65_B 291 ----------PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE-IIRNKLHFPMDIHT 337 (386)
T ss_dssp ----------EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE-EEECSCSCCCCEEE
T ss_pred ----------ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE-EEccCCCCCceEEE
Confidence 116777 344555566677889999877787766 55444333334433
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.48 E-value=1.9e-05 Score=67.57 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=85.2
Q ss_pred CCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCce
Q 043890 242 GETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA 319 (509)
Q Consensus 242 ~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 319 (509)
++.|... .++.+.+||.++.+...++ ..... ...+.+++ ..|+.+..++.|.++|..+.+. .
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti------~~~~e-----G~glt~dg-~~L~~SdGs~~i~~iDp~T~~v----~ 159 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSF------NYDGE-----GWGLTHND-QYLIMSDGTPVLRFLDPESLTP----V 159 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEE------ECSSC-----CCCEEECS-SCEEECCSSSEEEEECTTTCSE----E
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEE------ECCCC-----ceEEecCC-CEEEEECCCCeEEEEcCCCCeE----E
Confidence 4444444 7999999999987765443 12221 12333566 5566556688899999998774 3
Q ss_pred eeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccce
Q 043890 320 ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDK 398 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (509)
..+....... .-..++.+.|. +|+..+... .+.|.+.|..+ ++.+..+....-... .... .....-.
T Consensus 160 ~~I~V~~~g~-------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~-~~~~--~~~~~vl 227 (262)
T 3nol_A 160 RTITVTAHGE-------ELPELNELEWV-DGEIFANVWQTNKIVRIDPET-GKVTGIIDLNGILAE-AGPL--PSPIDVL 227 (262)
T ss_dssp EEEECEETTE-------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT-CBEEEEEECTTGGGG-SCSC--CSSCCCE
T ss_pred EEEEeccCCc-------cccccceeEEE-CCEEEEEEccCCeEEEEECCC-CcEEEEEECCcCccc-cccc--cCcCCce
Confidence 3333211000 00245667776 776555553 48999999997 677777765321100 0000 0000012
Q ss_pred eeEEEcCCCCEEEEeeCC
Q 043890 399 FECCLSGDGLRVATGSYS 416 (509)
Q Consensus 399 ~~~~~s~~~~~l~~~~~d 416 (509)
+.++|+|+++.|+..+..
T Consensus 228 NGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 389999988877777654
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.42 E-value=1.7e-05 Score=76.21 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=91.0
Q ss_pred CCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEE-e-CCCCcEEEEEE----------------
Q 043890 240 SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-H-PTHCNMLAYSS---------------- 299 (509)
Q Consensus 240 ~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~-~~~~~~l~~~~---------------- 299 (509)
+||+++.+. .++.|.+.|+++.+... ++. +. ....+..+++ . |++ .++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~-ii~-----ip-~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA-ILE-----IP-NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE-EEE-----CS-SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCG
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee-EEe-----CC-CCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccc
Confidence 478887777 57889999999866432 211 11 2235678887 4 888 6776664
Q ss_pred --cCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCC----------------eE
Q 043890 300 --SKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYM----------------TL 361 (509)
Q Consensus 300 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~----------------~i 361 (509)
.++.+.++|..+.+. ...+... +....++++|+|+++++.+.. .|
T Consensus 171 ~~~~~~vtvID~~t~~v----~~qI~Vg-------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEV----AWQVLVS-------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp GGEEEEEEEEETTTTEE----EEEEEES-------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cccCceEEEEECCCCeE----EEEEEeC-------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 245789999988764 2222221 123457789999988876421 24
Q ss_pred EEEE-----------------------CCCC-CCc-eEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-C
Q 043890 362 KLWD-----------------------INMD-SGP-VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-Y 415 (509)
Q Consensus 362 ~iwd-----------------------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~ 415 (509)
.++| .++. +.. +..+..... ...+.++|||+++++++ .
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~----------------PhGv~~sPDGk~v~V~~~~ 297 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN----------------PHGCNMAPDKKHLCVAGKL 297 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS----------------CCCEEECTTSSEEEEECTT
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC----------------ceEEEEcCCCCEEEEeCCC
Confidence 4444 3320 011 222221111 12799999999877666 5
Q ss_pred CCcEEEEeCCCCc
Q 043890 416 SNLFRVFGCAPGS 428 (509)
Q Consensus 416 dg~i~iw~~~~~~ 428 (509)
+.+|.++|+.+.+
T Consensus 298 s~~VsVid~~~~~ 310 (595)
T 1fwx_A 298 SPTVTVLDVTRFD 310 (595)
T ss_dssp SSBEEEEEGGGHH
T ss_pred CCeEEEEECcccc
Confidence 7899999998543
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.41 E-value=9.8e-05 Score=67.09 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=92.6
Q ss_pred CeEEEEECC-CCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCC-CccceEEEEEeC-CCCcEEEEEEc--------
Q 043890 232 HINSISNNS-DGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHP-THCNMLAYSSS-------- 300 (509)
Q Consensus 232 ~v~~i~~~~-~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~l~~~~~-------- 300 (509)
....+++.+ +++++++...+.|..+|..++.. ..+. ....+ .......+++.+ +| ++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~----~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLA----TSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGV 154 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEE----SEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEec----ccCCCCcccccceEEEecCCC-EEEEECCccccccccc
Confidence 467889987 66555554445588888664321 1110 00111 123467899999 87 66665432
Q ss_pred ---------CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECCCC
Q 043890 301 ---------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDINMD 369 (509)
Q Consensus 301 ---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~~~ 369 (509)
++.|..||..+++. ..+...- .....++++|+|+.|+.+ . .+.|.+|++...
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~-----~~~~~~~------------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKET-----TLLLKEL------------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEE-----EEEEEEE------------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred ceehcccCCCceEEEEeCCCCEE-----EEeccCC------------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 36788888876652 2221110 235679999999977665 3 389999998742
Q ss_pred C-CceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC----------CCcEEEEeCCCCceee
Q 043890 370 S-GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY----------SNLFRVFGCAPGSTEA 431 (509)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~ 431 (509)
. .....+....+ . ..++++++|++.++... .+.|..++.+ ++.+.
T Consensus 218 ~~~~~~~~~~~~g-P---------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~ 273 (322)
T 2fp8_A 218 KKGTAEVLVKIPN-P---------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE 273 (322)
T ss_dssp TTTCEEEEEECSS-E---------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE
T ss_pred cCCccceEEeCCC-C---------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEE
Confidence 1 11222221111 1 17899999987766544 4567777764 55544
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=0.00016 Score=71.11 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=40.1
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
+.|..||+.+ ++.+-.+....... ...+...+..++.++.|+.|+.||.++|+++- .++.
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~~----------------~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw-~~~~ 503 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAAW----------------GGTLYTKGGLVWYATLDGYLKALDNKDGKELW-NFKM 503 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SBCEEETTTEEEEECTTSEEEEEETTTCCEEE-EEEC
T ss_pred CeEEEEECCC-CCEEEEecCCCCcc----------------ceeEEECCCEEEEEcCCCeEEEEECCCCCEEE-EEeC
Confidence 6788888886 55555544322110 22233356677779999999999999999887 5543
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.39 E-value=0.00045 Score=70.61 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=47.5
Q ss_pred ceEEEEEC-CCCCeEEeecC-----CCeEEEEEccCC-CCCCCccccccccccccccCCcceEEeeeccCCcchhhccch
Q 043890 42 IISAIEFD-KTGDHLATGDR-----GGRVVLFERTDT-KDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSL 114 (509)
Q Consensus 42 ~I~~v~~s-~~~~~la~g~~-----dg~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 114 (509)
.+...+|| |||++||.+.. ...|+++|+.++ +... ..+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----------------------~~~~------------ 220 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----------------------DKVS------------ 220 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----------------------CCEE------------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----------------------cccc------------
Confidence 67889999 99999885432 235999999887 5300 0000
Q ss_pred hhhccceeeEEEEcCCCceEEEeeCC-----CeEEEEeccch
Q 043890 115 EIEEKINKIRWCQTANGALFLLSTND-----KTIKFWKVQEK 151 (509)
Q Consensus 115 ~~~~~v~~l~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~ 151 (509)
.....+.| +|||+.|+....| ..|..+++.++
T Consensus 221 ---~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 221 ---GTNGEIVW--GPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp ---EECSCCEE--CSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred ---CceeeEEE--ecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 22457889 9999888877665 24566666543
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.37 E-value=0.0005 Score=59.17 Aligned_cols=177 Identities=12% Similarity=0.121 Sum_probs=97.1
Q ss_pred CeEEEEECCCCCEEEEE-cCCeEEEEEccCCCcee--eEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA-DDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
..-.|++.+++.++++. .++.+.++++....... ....+.. ...........|+|+|.+ +.|.++.+.....+|.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEEEEECcCCceEEE
Confidence 46678888888877777 78899999987655321 2111110 112345667899999998 5666666554455555
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE-EEecC-CeEEEEECCCCCCceEEEeecccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI-LSRDY-MTLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
++ +......+..+...... -..+...+.+++++|....| +..+. ..+.++|.. ++.+..+.-..+.-. +
T Consensus 149 ~~-g~~~~~~l~i~~~~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~-l 219 (255)
T 3qqz_A 149 VN-GLLSSNELHISKDKALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG-L 219 (255)
T ss_dssp EE-STTCSSCCEEEECHHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG-C
T ss_pred Ec-ccccCCceeeecchhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC-c
Confidence 44 11000011222110000 00011357899999965444 44443 899999987 355555443321100 0
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
...+..--.++|.++|++ +..++-+.++.|.-.
T Consensus 220 -----~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 220 -----SHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ 252 (255)
T ss_dssp -----SSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred -----ccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence 000111117999999984 445777787777644
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=7.8e-05 Score=63.23 Aligned_cols=148 Identities=9% Similarity=0.021 Sum_probs=84.3
Q ss_pred CCEEE-EE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCce
Q 043890 242 GETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHA 319 (509)
Q Consensus 242 ~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 319 (509)
++.|. .. .++.+.+||.++.+...++ ..... . ..+ .+++ ..|+.+..++.|.++|..+.+. .
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti------~~~~~--G-wgl--t~dg-~~L~vSdgs~~l~~iDp~t~~~----~ 137 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARF------RYPGE--G-WAL--TSDD-SHLYMSDGTAVIRKLDPDTLQQ----V 137 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEE------ECSSC--C-CEE--EECS-SCEEEECSSSEEEEECTTTCCE----E
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEE------eCCCC--c-eEE--eeCC-CEEEEECCCCeEEEEeCCCCeE----E
Confidence 34444 44 7999999999987755443 12221 1 233 3566 5566666789999999998764 3
Q ss_pred eeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCCCccce
Q 043890 320 ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDK 398 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (509)
..++....... -..++.+.|. +|+..+... ...|.+.|..+ ++.+..+....-... ..... .....-.
T Consensus 138 ~~I~V~~~g~~-------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~-~~~~~-~~~~~vl 206 (243)
T 3mbr_X 138 GSIKVTAGGRP-------LDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPD-ADALT-DSTNDVL 206 (243)
T ss_dssp EEEECEETTEE-------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTT-TTSCC-CTTSSCE
T ss_pred EEEEEccCCcc-------cccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCccc-ccccc-CCcCCce
Confidence 33332211000 0245667766 677555553 48999999997 677777764421100 00000 0000012
Q ss_pred eeEEEcCCCCEEEEeeCC
Q 043890 399 FECCLSGDGLRVATGSYS 416 (509)
Q Consensus 399 ~~~~~s~~~~~l~~~~~d 416 (509)
+.++++|+++.|...+..
T Consensus 207 NGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 389999987776666643
No 260
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.00029 Score=60.64 Aligned_cols=220 Identities=10% Similarity=0.155 Sum_probs=126.8
Q ss_pred ccceEEEEECCCCC-eEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeee--ccCCcchhhccchhh
Q 043890 40 VDIISAIEFDKTGD-HLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF--QSHEPEFDYLKSLEI 116 (509)
Q Consensus 40 ~~~I~~v~~s~~~~-~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~ 116 (509)
.+.++.++|+|++. +.++...++.|...|.. ++. ...+ .+.
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-----------------------~~~i~l~g~------------ 69 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-----------------------IRTIPLDFV------------ 69 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-----------------------EEEEECSSC------------
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-----------------------EEEEecCCC------------
Confidence 35699999999765 55567778888888887 443 2222 221
Q ss_pred hccceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceec
Q 043890 117 EEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFS 196 (509)
Q Consensus 117 ~~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 196 (509)
....+|++ .+++.++++.-.++.+.++++...........
T Consensus 70 -~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~------------------------------------- 109 (255)
T 3qqz_A 70 -KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKK------------------------------------- 109 (255)
T ss_dssp -SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEE-------------------------------------
T ss_pred -CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeee-------------------------------------
Confidence 23677888 78887666665678899988865431110000
Q ss_pred CCCCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEE-cCCeEEEEEccC--CCceeeEeeccCC
Q 043890 197 FPPGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKPA 273 (509)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~ 273 (509)
+.+ .............++|+|.++.|.++ +.....+|.++. ....+.+...+..
T Consensus 110 --------~~~---------------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 110 --------IKI---------------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp --------EEC---------------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred --------ecc---------------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 000 00001234457899999998777777 544445555541 1111122110000
Q ss_pred ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEE
Q 043890 274 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHI 353 (509)
Q Consensus 274 ~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 353 (509)
.-..+-..+.+++++|...++++.+...+.+.++|..... +..+..... ..-+..-......++|.++|++.
T Consensus 167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-----~~~~~L~~g---~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-----IGEMSLTKG---SRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-----EEEEECSTT---GGGCSSCCCSEEEEEECTTCCEE
T ss_pred ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-----EEEEEcCCc---cCCcccccCCCCeeEECCCCCEE
Confidence 0011234578999999876788888888999999977542 222222110 00000001356889999999977
Q ss_pred EEecCCeEEEEEC
Q 043890 354 LSRDYMTLKLWDI 366 (509)
Q Consensus 354 ~s~~~~~i~iwd~ 366 (509)
+++..+.++.|.-
T Consensus 239 IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 239 IVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTEEEEEEC
T ss_pred EEcCCceEEEEEe
Confidence 7765477777654
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.0042 Score=63.91 Aligned_cols=280 Identities=11% Similarity=0.058 Sum_probs=157.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEccCCCCCCCccccccccccccccCCcceEEeeeccCCcchhhccchhhhc
Q 043890 39 EVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 118 (509)
Q Consensus 39 h~~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 118 (509)
....|.++..+++|.+- .|+.++-|..++...... ..+.... .-.....+ ...
T Consensus 311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~------------------------~~~~~~~-~~~~~~~l-~~~ 363 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTF------------------------HTWSYSP-TQMNESSL-SNK 363 (781)
T ss_dssp SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSC------------------------EEEC-----CCCSSCC-SSS
T ss_pred CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcc------------------------eeeccCc-cccccCCC-CCc
Confidence 34679999999988744 456556688888765443 1110000 00000000 014
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhccCCCCCcccCCCCcccCCCCccCCccccCCCCCcceecCC
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNVDPSKAVGNGNVASSSNNVSPKPYLANGGSPSKEFSFP 198 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 198 (509)
.|.++.. .++|. |..|+.++-|..|+..++....... +
T Consensus 364 ~v~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~----~----------------------------------- 401 (781)
T 3v9f_A 364 VVSSVCD--DGQGK-LWIGTDGGGINVFENGKRVAIYNKE----N----------------------------------- 401 (781)
T ss_dssp CEEEEEE--CTTSC-EEEEEBSSCEEEEETTEEEEECC------------------------------------------
T ss_pred ceEEEEE--cCCCC-EEEEeCCCcEEEEECCCCeEEEccC----C-----------------------------------
Confidence 5888887 76664 6667767778889987654221100 0
Q ss_pred CCCCCccccccccccccceeeeeeeeeecccccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCC
Q 043890 199 PGGIPSLRLPTVTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL 278 (509)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 278 (509)
.......|.++...+++++.+...++-|..++.++++.. .+ . .....
T Consensus 402 ---------------------------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~---~--~~~~~ 448 (781)
T 3v9f_A 402 ---------------------------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-II---E--LEKNE 448 (781)
T ss_dssp -----------------------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-EC---C--STTTC
T ss_pred ---------------------------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-Ee---c--cCCCC
Confidence 011224588888888887766555566888887654321 11 0 00123
Q ss_pred ccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC
Q 043890 279 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY 358 (509)
Q Consensus 279 ~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 358 (509)
...|.++...+++ + |..|+. +-|..||..+++. ..+....... .....|.++...++|.+.+....
T Consensus 449 ~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~-----~~~~~~~~~~------~~~~~i~~i~~d~~g~lWigt~~ 514 (781)
T 3v9f_A 449 LLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKV-----IHHYDTSNSQ------LLENFVRSIAQDSEGRFWIGTFG 514 (781)
T ss_dssp CCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSC-----CEEECTTTSS------CSCSCEEEEEECTTCCEEEEESS
T ss_pred CCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeE-----EecccCcccc------cccceeEEEEEcCCCCEEEEEcC
Confidence 4678899888887 4 445555 5689999887653 2221111000 01257899999999997776654
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccC-
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEAS- 437 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~- 437 (509)
+.+..||..+ .....+...... ....|.++...++|.+.++ +.+|.|..||..+++.. .+...
T Consensus 515 ~Gl~~~~~~~--~~~~~~~~~~~l-----------~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~--~~~~~~ 578 (781)
T 3v9f_A 515 GGVGIYTPDM--QLVRKFNQYEGF-----------CSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ--VFQRKE 578 (781)
T ss_dssp SCEEEECTTC--CEEEEECTTTTC-----------SCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE--EECGGG
T ss_pred CCEEEEeCCC--CeEEEccCCCCC-----------CCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE--EccccC
Confidence 4577788764 333333321111 0112347888888886654 44666588998876543 22211
Q ss_pred ---CCceeEEEEcCCC
Q 043890 438 ---KNPMRRQVQTPSR 450 (509)
Q Consensus 438 ---~~~v~~~~~s~~~ 450 (509)
...+.++...+++
T Consensus 579 gl~~~~i~~i~~d~~g 594 (781)
T 3v9f_A 579 GLPNTHIRAISEDKNG 594 (781)
T ss_dssp TCSCCCCCEEEECSSS
T ss_pred CCCCceEEEEEECCCC
Confidence 2345566655543
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=4e-05 Score=65.54 Aligned_cols=152 Identities=8% Similarity=-0.014 Sum_probs=86.3
Q ss_pred EEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcc
Q 043890 236 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 236 i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
+++.. +++++.. .++.+.+||.++.+...++ ...... ..++ +++ +.|+.+..++.|.++|..+.+.
T Consensus 101 it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti------~~~~eG---wGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 101 LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT------RYSGEG---WGLC--YWN-GKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp EEECS-SCEEEEESSSCEEEEEETTTTEEEEEE------ECSSCC---CCEE--EET-TEEEEECSSSEEEEECTTTCCE
T ss_pred EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE------eCCCce---eEEe--cCC-CEEEEECCCCEEEEEcCCCCeE
Confidence 44443 2344444 8999999999987765443 122211 2333 556 5666666789999999998774
Q ss_pred cCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeecccccccccccccCC
Q 043890 315 CDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEND 393 (509)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
...+........ -..++.+.|. +|++.+... .+.|.+.|..+ ++.+..+....-............
T Consensus 168 ----~~~I~V~~~g~~-------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 168 ----VGAVQVKLRGQP-------VELINELECA-NGVIYANIWHSSDVLEIDPAT-GTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp ----EEEEECEETTEE-------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTT-CBEEEEEECHHHHHHHTTTCCCTT
T ss_pred ----EEEEEeCCCCcc-------cccccccEEe-CCEEEEEECCCCeEEEEeCCC-CcEEEEEECCCCcccccccccCcC
Confidence 333332211100 1245677777 776555553 48999999997 677777765421100000000000
Q ss_pred CccceeeEEEcCCCCEEEEeeC
Q 043890 394 SIFDKFECCLSGDGLRVATGSY 415 (509)
Q Consensus 394 ~~~~v~~~~~s~~~~~l~~~~~ 415 (509)
.+ .+.++++|+++.|+..+.
T Consensus 235 ~v--lNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 AV--LNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CC--EEEEEECTTTCCEEEEET
T ss_pred Cc--eEEEEEcCCCCEEEEeCC
Confidence 11 238999997766555554
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.27 E-value=0.00012 Score=73.64 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=46.2
Q ss_pred EEEECC-CCCeEEeecCCC-----------eEEEEEccCCCCCCCccccccccccccccCCcceEEeee-ccCCcchhhc
Q 043890 45 AIEFDK-TGDHLATGDRGG-----------RVVLFERTDTKDHGGSRRDLERMDYSTSRHPEFRYKTEF-QSHEPEFDYL 111 (509)
Q Consensus 45 ~v~~s~-~~~~la~g~~dg-----------~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~ 111 (509)
.+++.+ ++++++.|+.+. .+.+||..+++-. . +..+ ..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~--~-------------------~~~~~~~~~------ 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS--D-------------------RTVTVTKHD------ 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC--C-------------------CEEEECSCC------
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE--e-------------------CcccCCCCC------
Confidence 456667 889999887542 5788888876540 0 0111 1111
Q ss_pred cchhhhccceeeEEEEcCCCceEEEeeC-CCeEEEEeccchh
Q 043890 112 KSLEIEEKINKIRWCQTANGALFLLSTN-DKTIKFWKVQEKK 152 (509)
Q Consensus 112 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~ 152 (509)
....++++ ..+++.++.|+. +..+.+||..+.+
T Consensus 243 ------~~~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 243 ------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp ------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred ------CccccccC--CCCCCEEEeCCCCCCceEEecCcCCc
Confidence 22334566 778999999884 5689999988664
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.0054 Score=63.15 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=98.2
Q ss_pred ccCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCC---ccCCCccceEEEEEeCCCCcEEEEEEcCCeEEE
Q 043890 230 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 306 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~v 306 (509)
...|.++...++|.+-+...++-|..++....... .+...+. ...-....|.++...+++ + |..|+.++-|..
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH--TWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE--EEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce--eeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEE
Confidence 34588999998887665556667888887654321 1100000 011124568999988876 4 556676677999
Q ss_pred EECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccc
Q 043890 307 IDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 307 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
||..++.. ..+.... ......|.++...++|.+.+...++.+..+|..+ .....+... ..
T Consensus 388 ~~~~~~~~-----~~~~~~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~--~~~~~~~~~-~~---- 447 (781)
T 3v9f_A 388 FENGKRVA-----IYNKENR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL--KKFQIIELE-KN---- 447 (781)
T ss_dssp EETTEEEE-----ECC-------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS--CEEEECCST-TT----
T ss_pred EECCCCeE-----EEccCCC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC--CcEEEeccC-CC----
Confidence 99876542 2121100 0112578999998888877754446788888875 223332211 00
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
....|+++...+++.+.+ |+. +.|..|+..+++..
T Consensus 448 -------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 448 -------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp -------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCC
T ss_pred -------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEE
Confidence 001133777777777555 444 56889998876544
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.24 E-value=0.0026 Score=57.30 Aligned_cols=164 Identities=11% Similarity=-0.016 Sum_probs=97.6
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-CeEEEEEC
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-g~i~vwd~ 309 (509)
...+++++.+..|..+ .++.|.+++++... ...+. .........++++|.+..++++.... +.|...++
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 4578888655555444 68899999987533 21111 11224568999999763444444333 78888888
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C-CeEEEEECCCCCCceEEEeeccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
.... .+.+.... ....+.+++++++..|+.++ . +.|..+|+.. .....+........
T Consensus 151 dG~~-----~~~~~~~~-----------~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~~~~~--- 209 (316)
T 1ijq_A 151 NGVD-----IYSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLA--- 209 (316)
T ss_dssp TSCC-----EEEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECTTTTS---
T ss_pred CCCC-----eEEEEECC-----------CCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecCCccC---
Confidence 6543 12221111 13578999999888777764 3 8999999974 23333322110000
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
.-+.+++. .+.++.+-...+.|..++..+|+.+. .+..
T Consensus 210 ---------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~-~i~~ 247 (316)
T 1ijq_A 210 ---------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN-LLAE 247 (316)
T ss_dssp ---------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE-EEEC
T ss_pred ---------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE-EEec
Confidence 01166774 35555555667899999987787666 5543
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.23 E-value=0.00091 Score=65.78 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=24.9
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 405 GDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 405 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
..+.+++.++.|+.++.||.++|+++- .++
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW-~~~ 511 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLW-KFK 511 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEE-EEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEE-Eee
Confidence 356777889999999999999999886 444
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.18 E-value=0.0009 Score=65.86 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=40.2
Q ss_pred CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 359 MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 359 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
+.|..||+.+ ++.+-......... .-.....+.+++.++.|+.++.||.++|+++- .++.
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~~----------------~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW-~~~~ 525 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPLW----------------AGVLATAGNLVFTGTGDGYFKAFDAKSGKELW-KFQT 525 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SCCEEETTTEEEEECTTSEEEEEETTTCCEEE-EEEC
T ss_pred ceEEEEECCC-CCEEEEecCCCCCc----------------ccceEeCCCEEEEECCCCcEEEEECCCCCEEE-EecC
Confidence 7788899887 55554444322110 11222356778889999999999999999887 5543
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.11 E-value=0.0062 Score=56.86 Aligned_cols=174 Identities=9% Similarity=0.029 Sum_probs=103.3
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-c-CCeEEEE
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-S-KGSIRLI 307 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~-dg~i~vw 307 (509)
....+++.+.+..|+.+ ..+.|.+.+++..... .+ +...-.....|+++|.+ ..|+... . .+.|...
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-~l-------~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-EE-------EECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceE-EE-------EeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEE
Confidence 46688888755555544 6889999988754322 11 11123456899999976 4444444 2 4789999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPK 385 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 385 (509)
++..... ..+.... ....+.|++++++..|+.++ .+.|..+|+.. ...............
T Consensus 231 ~~dG~~~-----~~~~~~~-----------l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~- 292 (400)
T 3p5b_L 231 GLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAH- 292 (400)
T ss_dssp ETTSCSC-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCCEEEEECSSTTSS-
T ss_pred eCCCCcc-----EEEEECC-----------CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCC-
Confidence 8876542 2221111 13578999999888887764 38899999874 332222221111100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEE
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQ 446 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 446 (509)
-+.+++. .+.++.+-...+.|..++..+|+.+. ++.........+..
T Consensus 293 ------------P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~-~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 293 ------------PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN-LLAENLLSPEDMVL 339 (400)
T ss_dssp ------------EEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE-EEECSCSCEEEEEE
T ss_pred ------------CEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE-EEecCCCCCceEEE
Confidence 1156662 33455555667899999988887776 55544443444433
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.10 E-value=0.0032 Score=59.44 Aligned_cols=183 Identities=10% Similarity=0.021 Sum_probs=93.5
Q ss_pred eEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCc-EEEEEEcCCeEEEEEC
Q 043890 233 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~l~~~~~dg~i~vwd~ 309 (509)
...++++| ++.++++- .++.|+.+|..++.....+... . ....-..++|+|++ + ++++-...+.|+.+|+
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-----~-~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-----D-TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-----S-CCSSCEEEEECTTS-SEEEEEETTTTEEEEEEB
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-----C-CCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeC
Confidence 45678899 66666666 7889999998755432222111 1 11223479999998 6 4455555789999887
Q ss_pred CCCcccCCceeeeccc-cCCCCcc--ccccccccEEEEEE---------ecCCCEEEEecC-CeEEEEECCCCCCceEEE
Q 043890 310 RQSALCDSHAILFEEQ-EAPGSRS--FFTEIIASISDIKF---------AKDGRHILSRDY-MTLKLWDINMDSGPVATF 376 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~i~~~~~---------s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~ 376 (509)
............+... ....... .....-.....+++ .++|.+.++-.. +.|+.++.. + .+.++
T Consensus 303 d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~ 379 (433)
T 4hw6_A 303 NRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTY 379 (433)
T ss_dssp CTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEE
T ss_pred CCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEE
Confidence 6321100011222221 0000000 00001124677898 666766666443 889998853 2 44444
Q ss_pred eeccc--ccccccc-cccCCCccceeeEEEc-CCCCEEEEeeCCCcEEEEeCC
Q 043890 377 QVHEY--LRPKLCD-LYENDSIFDKFECCLS-GDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 377 ~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 425 (509)
.+... ....... ......+..-..++++ ++|.++++-..++.|+.++++
T Consensus 380 ~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 380 AGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 43211 0000000 0001111222378888 566666555567788877654
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.09 E-value=0.00028 Score=72.09 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=73.5
Q ss_pred CeEEEEEC-CCCCEEEEE-c-CC----eEEEEEccCC-CceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC--
Q 043890 232 HINSISNN-SDGETFISA-D-DL----RINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 301 (509)
Q Consensus 232 ~v~~i~~~-~~~~~l~~~-~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-- 301 (509)
.+...+|+ |||++|+.+ + +| .|+++|+.++ +... ..+ ......++|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------~~~---~~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------DKV---SGTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------CCE---EEECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------ccc---cCceeeEEEecCC-CEEEEEEECCC
Confidence 57788999 999998866 3 33 4999999987 5211 011 1123468999998 666666554
Q ss_pred ---CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----CCeEEEEECCCC
Q 043890 302 ---GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----YMTLKLWDINMD 369 (509)
Q Consensus 302 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~ 369 (509)
..|.++++.++.... ...+.... ......+.|+|||++|+... ...|+++|+.+.
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECCC-----------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCCEEEEEECCCCchhc--EEEEecCC-----------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 358888887654211 12222111 12356789999999888642 267888998863
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.0011 Score=62.58 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=48.1
Q ss_pred eEEEEECC-CCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCc-EEEEEEcCCeEEEEEC
Q 043890 233 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~-~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~l~~~~~dg~i~vwd~ 309 (509)
...++++| ++.++++- .++.|+.++....... .+. ... .......++|+|++ + ++++-...+.|..++.
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeC
Confidence 45688999 67766666 7899999998854321 111 111 12456789999998 6 4555556789999887
Q ss_pred CC
Q 043890 310 RQ 311 (509)
Q Consensus 310 ~~ 311 (509)
..
T Consensus 300 d~ 301 (430)
T 3tc9_A 300 DW 301 (430)
T ss_dssp ET
T ss_pred Cc
Confidence 64
No 272
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.08 E-value=0.0015 Score=64.23 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=21.3
Q ss_pred CCceEEEeeCCCeEEEEeccchhhhhh
Q 043890 130 NGALFLLSTNDKTIKFWKVQEKKVKKI 156 (509)
Q Consensus 130 ~~~~l~s~~~dg~i~vwd~~~~~~~~~ 156 (509)
++..++.++.|+.+..+|..+++.+..
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 345788888899999999999876543
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.02 E-value=0.0014 Score=65.95 Aligned_cols=73 Identities=10% Similarity=0.103 Sum_probs=47.8
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cC-----CeE
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GSI 304 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~d-----g~i 304 (509)
..++++..++++++.| .+..+.+||..+.+.. .+ ..+..... -.+++..+++ ++++.|+ .+ ..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~-~~-----~~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PG-----PDMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-EC-----CCCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCcee-EC-----CCCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence 3456778899999888 4678999999875422 11 11111111 1245566777 8888888 34 569
Q ss_pred EEEECCCCc
Q 043890 305 RLIDLRQSA 313 (509)
Q Consensus 305 ~vwd~~~~~ 313 (509)
.+||..+.+
T Consensus 317 e~yd~~t~~ 325 (656)
T 1k3i_A 317 EVYSPSSKT 325 (656)
T ss_dssp EEEETTTTE
T ss_pred eEeCCCCCc
Confidence 999998765
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.012 Score=59.94 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-cC-CeEEEE
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-GSIRLI 307 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-~d-g~i~vw 307 (509)
....|++.+.++.|+.+ ..+.|.+.+++.... ..+ +.........|+++|.+ ..|+.+. .+ +.|.+.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l-------~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEE-------EECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEE-------EeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEE
Confidence 35678888877666655 688999999885432 221 11223457899999986 4444444 33 789999
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPK 385 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 385 (509)
++..... ..+.... ......|++++.+..|+.++ .+.|..+|+.. ......+........
T Consensus 543 ~~dG~~~-----~~lv~~~-----------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~- 604 (791)
T 3m0c_C 543 GLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAH- 604 (791)
T ss_dssp ETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSS-
T ss_pred ecCCCce-----EEEEeCC-----------CCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCC-
Confidence 9876542 2222111 13678999998877777764 38899999874 333333322111111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEE-eeCCCcEEEEeCCCCceeeeeec
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVAT-GSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
-+.+++. +..|+. -...+.|...+..+|+.+. ++.
T Consensus 605 ------------P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~-~l~ 640 (791)
T 3m0c_C 605 ------------PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN-LLA 640 (791)
T ss_dssp ------------EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE-EEE
T ss_pred ------------CCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceE-Eee
Confidence 1155553 334444 4456788888877787666 443
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.93 E-value=0.0083 Score=55.75 Aligned_cols=120 Identities=10% Similarity=-0.046 Sum_probs=71.4
Q ss_pred CeEEEEECCCCCEEEEE--cC-CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA--DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
....++++|.+..|... .. +.|..++++..... .+ ....-.....|+++|++.+++++-...+.|..+|
T Consensus 203 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 203 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EE-------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 46788999877766655 44 78888888753321 11 1112345689999987635555555678899999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
+..... +.+.... ......+++. ++.++++-. .+.|..+|..+ ++....+.
T Consensus 275 ~dG~~~-----~~~~~~~-----------~~~P~giav~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 326 (386)
T 3v65_B 275 LDGSHR-----KAVISQG-----------LPHPFAITVF-EDSLYWTDWHTKSINSANKFT-GKNQEIIR 326 (386)
T ss_dssp TTSCSC-----EEEECSS-----------CSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred CCCCee-----EEEEECC-----------CCCceEEEEE-CCEEEEeeCCCCeEEEEECCC-CcceEEEc
Confidence 875431 2221111 1345677773 344444433 48899888654 45555544
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.93 E-value=0.011 Score=53.18 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=96.9
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE--cCCeEEEEE
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 308 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd 308 (509)
...+++.+.+..|+.+ ..+.|.+++++..... .+ ..........++++|.+ ..|+.+. ..+.|...+
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEE
Confidence 5578888755555444 6789999998754321 11 11223456899999976 4444444 357899888
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEee-ccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQV-HEYLRPK 385 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~-~~~~~~~ 385 (509)
+..... ..+.... ....+.+++++++..|+.++ .+.|..+|+.. .....+.. ....
T Consensus 152 ~dG~~~-----~~~~~~~-----------l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~--- 210 (318)
T 3sov_A 152 MDGSSR-----FIIINSE-----------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKGSLPH--- 210 (318)
T ss_dssp TTSCSC-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSCCSC---
T ss_pred cCCCCe-----EEEEECC-----------CCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEEecCCCCC---
Confidence 875431 2221111 13568999999888777764 38999999874 22232221 1111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 386 LCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 386 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
-+.+++.. +.++.+-...+.|..++..+|+... .+..
T Consensus 211 ------------P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~-~i~~ 247 (318)
T 3sov_A 211 ------------PFALTLFE-DILYWTDWSTHSILACNKYTGEGLR-EIHS 247 (318)
T ss_dssp ------------EEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE-EEEC
T ss_pred ------------ceEEEEeC-CEEEEEecCCCeEEEEECCCCCceE-EEeC
Confidence 11666643 3445555567899999998887765 4443
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.83 E-value=0.018 Score=52.57 Aligned_cols=120 Identities=9% Similarity=-0.065 Sum_probs=70.4
Q ss_pred CeEEEEECCCCCEEEEE--cC-CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA--DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
....++++|.+..|... .+ +.|..++++..... . .....-.....|+++|++.+++++-...+.|..+|
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~-------~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-I-------IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E-------SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-E-------EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 36789999876666555 45 78888888753321 1 11122345689999987735555555578899999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
+..... +.+.... ......+++. ++.++++-. .+.|..+|..+ ++....+.
T Consensus 232 ~dG~~~-----~~~~~~~-----------~~~P~giav~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSHR-----KAVISQG-----------LPHPFAITVF-EDSLYWTDWHTKSINSANKFT-GKNQEIIR 283 (349)
T ss_dssp TTSCSC-----EEEECSS-----------CSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred CCCCce-----EEEEeCC-----------CCCceEEEEE-CCEEEEecCCCCeEEEEEccC-CCccEEec
Confidence 876431 2221111 1345677773 344444433 48888888554 44444443
No 278
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.81 E-value=0.0071 Score=59.47 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=46.5
Q ss_pred EEEEeCCCCcEEEEEEcC----------------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEe
Q 043890 284 SAEFHPTHCNMLAYSSSK----------------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFA 347 (509)
Q Consensus 284 ~l~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 347 (509)
.+++.+.. .+++.+..+ +.|..+|.++++..+. ++..... .-.+.....++. +...
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d--~wd~d~~~~p~l-~d~~ 316 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG----YQKTPHD--EWDYAGVNVMML-SEQK 316 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE----EESSTTC--SSCCCCCCCCEE-EEEE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE----eecCCCc--cccccCCCccEE-Eecc
Confidence 35666776 666666654 3899999999985332 2211000 000011112222 2222
Q ss_pred -cCC---CEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 348 -KDG---RHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 348 -~~~---~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
.+| +.++.++ +|.++++|..+ ++++....
T Consensus 317 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 317 DKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp CTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred ccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 567 4566565 59999999987 66665543
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.78 E-value=0.015 Score=54.81 Aligned_cols=173 Identities=11% Similarity=0.007 Sum_probs=88.5
Q ss_pred CeEEEEECCCCCEEEEEcCC-----eEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC-CCCcEEEEEEcCCeEE
Q 043890 232 HINSISNNSDGETFISADDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIR 305 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~~~~dg~i~ 305 (509)
....++++++|+++++...+ .+...+......... .+. .-.....++++| ++ +++++-..++.|+
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~-------~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERL-------SLC-NARGAKTCAVHPQNG-KIYYTRYHHAMIS 253 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEE-------EEE-ECSSBCCCEECTTTC-CEEECBTTCSEEE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccc-------ccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEE
Confidence 47789999999944444321 133333221111000 000 123345788999 55 6666666678899
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCc---eEEEeecc
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGP---VATFQVHE 380 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~---~~~~~~~~ 380 (509)
.+|..++... ..+..... ...-..++|+|+|++|+.++ .+.|+.+++...... ...+.+..
T Consensus 254 ~~d~~~g~~~----~~~~~~~~----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~ 319 (433)
T 4hw6_A 254 SYDPATGTLT----EEEVMMDT----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH 319 (433)
T ss_dssp EECTTTCCEE----EEEEECSC----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred EEECCCCeEE----EEEeccCC----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence 9998866521 11111100 01234699999999666653 389999887632221 12332221
Q ss_pred cccccccccccCCCccceeeEEE---------cCCCCEEEEeeCCCcEEEEeCCCCc
Q 043890 381 YLRPKLCDLYENDSIFDKFECCL---------SGDGLRVATGSYSNLFRVFGCAPGS 428 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~---------s~~~~~l~~~~~dg~i~iw~~~~~~ 428 (509)
..............+..-..+++ .++|.+.++-..++.|+.++. +|.
T Consensus 320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 10000000000011111226788 667776666666778888874 453
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.78 E-value=0.02 Score=51.51 Aligned_cols=170 Identities=8% Similarity=-0.083 Sum_probs=95.7
Q ss_pred EEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeeec
Q 043890 244 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILFE 323 (509)
Q Consensus 244 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 323 (509)
+|+.+....|+..|+...+... + ......+.+++|++.+..++.+-..++.|..+++............+.
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~-~--------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTS-L--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEE-E--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred EEEEECCCeEEEEECCCcceEe-h--------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 4566645678899988755322 1 112345679999987635555555678999999876210000011111
Q ss_pred cccCCCCccccccccccEEEEEEecCCCEEEEe-c-CCeEEEEECCCCCCceEEEee-cccccccccccccCCCccceee
Q 043890 324 EQEAPGSRSFFTEIIASISDIKFAKDGRHILSR-D-YMTLKLWDINMDSGPVATFQV-HEYLRPKLCDLYENDSIFDKFE 400 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 400 (509)
.. ......+++++.+..|+.+ . .+.|.++|+.. .....+.. .... ...
T Consensus 74 ~~------------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~~~~---------------P~~ 124 (316)
T 1ijq_A 74 RD------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSK---------------PRA 124 (316)
T ss_dssp SS------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEECTTCC---------------EEE
T ss_pred CC------------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEECCCCC---------------cce
Confidence 11 0245788998766655554 3 48999999874 33333321 1111 127
Q ss_pred EEEcCCCCEEEEeeCC--CcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 401 CCLSGDGLRVATGSYS--NLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 401 ~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
++++|.+..|+.+... +.|..++++ |................+++++++..
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGR 177 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCE
Confidence 8999977766655543 688888886 43333122333455677888876554
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0099 Score=52.74 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=79.8
Q ss_pred eEEEEE---CCCCCEEEEEc--------------CCeEEEEEcc---CCCceeeEeeccCCccCC-------CccceEEE
Q 043890 233 INSISN---NSDGETFISAD--------------DLRINLWNLE---ISNQSFNIVDVKPANMED-------LTEVITSA 285 (509)
Q Consensus 233 v~~i~~---~~~~~~l~~~~--------------dg~i~iwd~~---~~~~~~~~~~~~~~~~~~-------~~~~i~~l 285 (509)
+..|.| .|+++++++.+ +..|..||+. +++..... ++.. ...+ -......+
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~-~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEK-VQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHH-HHHHHHHHHSSCCEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCcc-ccccccccccccccCCcee
Confidence 468889 68877777553 5779999998 66544322 1100 0000 11357899
Q ss_pred EEeCCCCcEEEEEEcC-CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEE
Q 043890 286 EFHPTHCNMLAYSSSK-GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKL 363 (509)
Q Consensus 286 ~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~i 363 (509)
+..++| +..++++.. +.|...+..... +..+........ .....+.++++|+|..|++.. .+.+.-
T Consensus 143 avD~~G-naYVt~s~~~~~I~rV~pdG~~-----~~~~~~~~~~~~------~~~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 143 AQDRDG-NSYVAFALGMPAIARVSADGKT-----VSTFAWESGNGG------QRPGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp EECTTS-CEEEEEEESSCEEEEECTTSCC-----EEEEEECCCCSS------SCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred EECCCC-CEEEeCCCCCCeEEEEeCCCCE-----EeeeeecCCCcc------cccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 999998 999989888 888888877543 222221110000 113577899999999888874 599999
Q ss_pred EECCC
Q 043890 364 WDINM 368 (509)
Q Consensus 364 wd~~~ 368 (509)
+|+..
T Consensus 211 fD~~~ 215 (334)
T 2p9w_A 211 FDVSK 215 (334)
T ss_dssp EECSS
T ss_pred EcCCC
Confidence 99884
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.0038 Score=58.98 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=70.4
Q ss_pred ceEEEEEeC-CCCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC-
Q 043890 281 VITSAEFHP-THCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY- 358 (509)
Q Consensus 281 ~i~~l~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 358 (509)
....|+++| ++ ..|.++...+.|+.+|+..+.+ ..+... ......++|+++|++|+.++.
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v-----~~~~~~------------~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYV-----STVYSG------------LSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEE-----EEEECC------------CSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEE-----EEEecC------------CCCcceEEEeCCCCEEEEEeCC
Confidence 456889998 44 4566666558899999987653 332221 145789999999996665532
Q ss_pred -C----eEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCCCcEEEEeCCCCce
Q 043890 359 -M----TLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYSNLFRVFGCAPGST 429 (509)
Q Consensus 359 -~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~ 429 (509)
+ .+..++..........+...... ..++++| ++.++++-..++.|+.|+...+..
T Consensus 200 ~~~~~~~v~~~~~~g~~~~~~~l~~~~~p----------------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 200 NNNDRPNNYILTRESGFKVITELTKGQNC----------------NGAETHPINGELYFNSWNAGQVFRYDFTTQET 260 (430)
T ss_dssp SCTTSEEEEEEEGGGTSCSEEEEEECSSC----------------CCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCcccceEEEEeCCCceeeeeeeccCCCc----------------eEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 2 34444443211111222211111 1789999 676666666778999999986654
No 283
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.74 E-value=0.00044 Score=69.72 Aligned_cols=175 Identities=11% Similarity=-0.016 Sum_probs=96.3
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-CeEEEEEC
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-g~i~vwd~ 309 (509)
...|++.+.+..|+.+ ..+.|.++++..... ..+ +.........|+++|.+..++++-... +.|.++++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l-------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL-------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEE-------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEE-------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 3457777554444444 678899998875432 111 111123456788998763444443233 67888777
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeeccccccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKLC 387 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
..... ..+.... ....+.|+|+|++..|+.++ .+.|..+|+.. .. ...+........
T Consensus 527 dG~~~-----~~l~~~~-----------l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~-~~~~~~~~~~~~--- 585 (699)
T 1n7d_A 527 NGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GN-RKTILEDEKRLA--- 585 (699)
T ss_dssp SSCCC-----CEESCSS-----------CSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SC-CEEECCCSSSCS---
T ss_pred CCCCe-----eEEEeCC-----------CCCccEEEEeccCCEEEEEecCCCeEEEEccCC-Cc-eEEEEecCCcCC---
Confidence 64331 1221110 12457899999876666653 38899999874 22 222221110000
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEc
Q 043890 388 DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQT 447 (509)
Q Consensus 388 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s 447 (509)
. .+.+++..+ .++++....+.|..++..+|+.+. ++.........+++.
T Consensus 586 -----~----P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~-~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 586 -----H----PFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN-LLAENLLSPEDMVLF 634 (699)
T ss_dssp -----S----CCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE-CCCTTCSSCCCCCBC
T ss_pred -----C----ceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE-EeecCCCCCcEEEEe
Confidence 0 015666544 445555667899999988888776 555433333444433
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.72 E-value=0.025 Score=51.15 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=78.8
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
+..+.+.+++..++++.+|.| |....+....... .......+..+.+.+++ .+++.+...+..+-.|-. +
T Consensus 124 ~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~------~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~g-G 193 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQAL------VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPG-Q 193 (327)
T ss_dssp EEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEE------ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTT-C
T ss_pred eEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEe------ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCC-C
Confidence 455666666666766655544 3333222222211 12234578899999987 776665444333334421 1
Q ss_pred cccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeecccccccccccccC
Q 043890 313 ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYEN 392 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (509)
. .+. .+... ....+..+.+.+++++++.+.+|.+++.+... ++....+.... .. ..
T Consensus 194 ~-tW~---~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~--~~------~~ 249 (327)
T 2xbg_A 194 T-AWE---PHNRT-----------TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPL--RR------NS 249 (327)
T ss_dssp S-SCE---EEECC-----------SSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTT--SS------CC
T ss_pred C-cee---ECCCC-----------CCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCc--cc------CC
Confidence 1 111 11110 11467889999999988877778877764221 11111111100 00 00
Q ss_pred CCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 043890 393 DSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPG 427 (509)
Q Consensus 393 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 427 (509)
..++.+.+.+++.+++.+ .+|.|+ +..+.|
T Consensus 250 ---~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG 279 (327)
T 2xbg_A 250 ---VGFLDLAYRTPNEVWLAG-GAGALL-CSQDGG 279 (327)
T ss_dssp ---SCEEEEEESSSSCEEEEE-STTCEE-EESSTT
T ss_pred ---cceEEEEecCCCEEEEEe-CCCeEE-EeCCCC
Confidence 012378888887766654 466663 344434
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.023 Score=53.98 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=68.3
Q ss_pred CeEEEEE-------CCCCCEEEEE-cCC-------eEEEEEccCCCcee-----eEeeccCCccCCCccceEEEEEeCCC
Q 043890 232 HINSISN-------NSDGETFISA-DDL-------RINLWNLEISNQSF-----NIVDVKPANMEDLTEVITSAEFHPTH 291 (509)
Q Consensus 232 ~v~~i~~-------~~~~~~l~~~-~dg-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~ 291 (509)
....++| +++++.|+++ ..+ .|.+++........ .. +.. -.....++++|++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~-------v~~-~~~p~giavdp~~ 258 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQL-------IAA-YKQCNGATIHPIN 258 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEE-------EEE-ESCCCCEEECTTT
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeeccccee-------ecc-CCCceEEEEcCCC
Confidence 4778999 9999966666 332 26666533311110 11 111 1233577889965
Q ss_pred CcEEEEEEcCCeEEEEECC-------CCcccCCc--------e-eeeccccCCCCccccccccccEEEEEEecCCCEEEE
Q 043890 292 CNMLAYSSSKGSIRLIDLR-------QSALCDSH--------A-ILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILS 355 (509)
Q Consensus 292 ~~~l~~~~~dg~i~vwd~~-------~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 355 (509)
..++++-..++.|..+|+. ++.. +.+ . ..+.... ......++|+|+|++|+.
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~-~tp~~~~~~g~~~~l~~~~~-----------~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGS-WDPIVKNNPNTFKQLFTIAD-----------PSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCC-CCCBGGGCTTTEEEEEECSS-----------SSCCEEEEECTTSSEEEE
T ss_pred CeEEEEECCCCEEEEEecccccccccCcee-ecccccccccccceeEecCC-----------CCCceEEEEcCCCCEEEE
Confidence 3666666678899999997 4542 000 0 0111100 134578999999997666
Q ss_pred ec--CCeEEEEECCC
Q 043890 356 RD--YMTLKLWDINM 368 (509)
Q Consensus 356 ~~--~~~i~iwd~~~ 368 (509)
++ ...|+.+|...
T Consensus 327 aD~~~h~I~kid~dg 341 (496)
T 3kya_A 327 GVINNHYFMRSDYDE 341 (496)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEecCC
Confidence 53 38899877653
No 286
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.65 E-value=0.011 Score=53.54 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=91.8
Q ss_pred CeEEEEECCCCCEEEEE-------------cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC--CCCc-EE
Q 043890 232 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCN-ML 295 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~-~l 295 (509)
..-++...|+|..++++ .+|.|.++|.++.......+.+....+....-....+.+.+ ++.. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778888776664 58999999987532211111111100222234556777766 3422 44
Q ss_pred EEEEc--CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----C-----------
Q 043890 296 AYSSS--KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----Y----------- 358 (509)
Q Consensus 296 ~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~----------- 358 (509)
++-.. +..|.+|++.........+..++... -...+.+.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-----------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-----------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 44333 46788887765432222233333221 14689999999999888753 1
Q ss_pred -CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 043890 359 -MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGS-YSNLFRVFGCAP 426 (509)
Q Consensus 359 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~ 426 (509)
..=++|.+.. .+.......-. . -+.++|+||++.|+.+. ..+.|+.|++..
T Consensus 200 ~~~g~vyr~d~-~~~~~~~~~l~-~---------------pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 200 LAWSFVTYYSP-NDVRVVAEGFD-F---------------ANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CCCEEEEEECT-TCCEEEEEEES-S---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCccEEEEEEC-CeEEEeecCCc-c---------------cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1123333332 22221111111 1 12799999998887765 578999999863
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.57 E-value=0.052 Score=50.59 Aligned_cols=171 Identities=8% Similarity=-0.091 Sum_probs=98.9
Q ss_pred CEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCCceeee
Q 043890 243 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHAILF 322 (509)
Q Consensus 243 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 322 (509)
.+|+.+....|+..++....... +......+..++|++.+..++.+-...+.|+.+++............+
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~---------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTS---------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEE---------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred ceeEEeccceeEEEccCCcceeE---------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 45666666788888888654321 112345678999998763455555567889999987632100001111
Q ss_pred ccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEee-cccccccccccccCCCcccee
Q 043890 323 EEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQV-HEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~ 399 (509)
... ......+++.+.+..|+.++ .+.|.+.++.. .....+.. .... ..
T Consensus 155 ~~~------------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~~~~~---------------P~ 205 (400)
T 3p5b_L 155 SRD------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSK---------------PR 205 (400)
T ss_dssp CSS------------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEECSSCC---------------EE
T ss_pred eCC------------CCCcccEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeCCCCC---------------cc
Confidence 111 13578899998655555543 38999999874 33333322 1111 12
Q ss_pred eEEEcCCCCEEEEeeC--CCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCC
Q 043890 400 ECCLSGDGLRVATGSY--SNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPS 452 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 452 (509)
.++++|.+.+|+.+.. .+.|+..+++...... .+.........+++.+++..
T Consensus 206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~-~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE-EECSSCSCEEEEEEETTTTE
T ss_pred eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE-EEECCCCceEEEEEEeCCCE
Confidence 7899997777665553 4789888887433322 33444456678888876554
No 288
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.55 E-value=0.015 Score=58.44 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeec
Q 043890 301 KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 301 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~ 379 (509)
+|.|..||+.+++..++ .+.. .......+...+.+++.++ ++.+++||.++ ++.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~----~~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWK----VPYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEE----EEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEE----ccCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecCC
Confidence 37899999999875332 1111 1222233445677777775 59999999997 7777777654
Q ss_pred c
Q 043890 380 E 380 (509)
Q Consensus 380 ~ 380 (509)
.
T Consensus 499 ~ 499 (668)
T 1kv9_A 499 S 499 (668)
T ss_dssp S
T ss_pred C
Confidence 3
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.47 E-value=0.1 Score=51.67 Aligned_cols=155 Identities=9% Similarity=0.029 Sum_probs=94.4
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE--cCCeEEEEE
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 308 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~--~dg~i~vwd 308 (509)
...+++.+.+..|..+ ..+.|.+.+++..... .+ ....-.....|+++|.. ..|..+. ..+.|...+
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VL-------VWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EE-------ECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EE-------EeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEe
Confidence 5578887766665555 6789999998754321 11 11223456899999965 3444444 257888888
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEeecccccccc
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQVHEYLRPKL 386 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 386 (509)
+..... ..+... ......+++++++..|+.++ .+.|..+|+.. ... ..+......
T Consensus 153 ~dG~~~-----~~l~~~------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~---- 209 (628)
T 4a0p_A 153 MDGSER-----TTLVPN------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR-EVIADDLPH---- 209 (628)
T ss_dssp TTSCSC-----EEEECS------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC-EEEEECCSC----
T ss_pred CCCCce-----EEEECC------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce-EEeeccCCC----
Confidence 876542 222111 14678999999888777764 38999999975 222 333221111
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 387 CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
-+.+++.. +.+..+-...+.|...|..+|+...
T Consensus 210 -----------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 210 -----------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp -----------EEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred -----------ceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 11666654 3444444457888888877776554
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.40 E-value=0.054 Score=48.53 Aligned_cols=158 Identities=8% Similarity=0.106 Sum_probs=88.4
Q ss_pred CCeEEEEEccCCC-ceeeEeeccCCccCCCccceEEEEE--eCCCC-cEEEEEEcCCeEEEEECC---CCcccCCceeee
Q 043890 250 DLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEF--HPTHC-NMLAYSSSKGSIRLIDLR---QSALCDSHAILF 322 (509)
Q Consensus 250 dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~ 322 (509)
+++|.+|++.... .+..+.... ..+..-...+..+++ +|... .++++...+|.+..|++. .++...+.++.|
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~-~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPD-HPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTT-SCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccc-cCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 6899999885222 222110000 000011145666777 66432 367888889999999983 333333345666
Q ss_pred ccccCCCCccccccccccEEEEEEecCCCEEEEecC-CeEEEEECCCCC----CceEEEeecccccccccccccCCCccc
Q 043890 323 EEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEYLRPKLCDLYENDSIFD 397 (509)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
... +.+..+...+....|+.+.. ..|..+|.+-.. ..+..+. ..... ..
T Consensus 177 ~lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~------------aD 230 (355)
T 3amr_A 177 KMN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLT------------RD 230 (355)
T ss_dssp ECS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBC------------SC
T ss_pred cCC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccc------------cC
Confidence 544 46788999988888888864 446666654211 1222221 11110 01
Q ss_pred eeeEEE--cCCCC-EEEEee-CCCcEEEEeCC-CCceeeeeec
Q 043890 398 KFECCL--SGDGL-RVATGS-YSNLFRVFGCA-PGSTEATTLE 435 (509)
Q Consensus 398 v~~~~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~~~~ 435 (509)
+-.+++ .++++ ||++++ .++...+||.. +.+.+. .|.
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg-~f~ 272 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA-DFR 272 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE-EEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE-EEE
Confidence 115555 55666 666666 57799999997 566665 554
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.017 Score=54.77 Aligned_cols=116 Identities=12% Similarity=0.018 Sum_probs=69.3
Q ss_pred ceEEEEEeCC-CCcEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEE-------ecCCCE
Q 043890 281 VITSAEFHPT-HCNMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF-------AKDGRH 352 (509)
Q Consensus 281 ~i~~l~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------s~~~~~ 352 (509)
....|+|+|. +.+++++-...+.|++.|+..+.+ ..+...... .......++| +++|.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----~~l~~~~~~--------~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----SSPLNINTI--------PTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----EEEECCTTS--------SCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----EEEEccCcc--------ccCCCcEEEEeecccccCCCCCE
Confidence 4678999983 425555555557899999998763 333221100 0135889999 999997
Q ss_pred EEEecC-C-------eEEEEECCCCCCce-----EEEeecccccccccccccCCCccceeeEEEcCCCCE-EEEeeCCCc
Q 043890 353 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR-VATGSYSNL 418 (509)
Q Consensus 353 l~s~~~-~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~ 418 (509)
|+.+++ + .|.+++....+... ..+..... + ..++++|++.. +++-..++.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~------------p----~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ------------C----NGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC------------C----CCEEECTTTCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC------------c----eEEEEcCCCCeEEEEECCCCE
Confidence 776643 2 26666644311221 22221111 1 17889995544 555557788
Q ss_pred EEEEeCC
Q 043890 419 FRVFGCA 425 (509)
Q Consensus 419 i~iw~~~ 425 (509)
|+.+|++
T Consensus 271 V~r~d~~ 277 (496)
T 3kya_A 271 VFRLDLV 277 (496)
T ss_dssp EEEECHH
T ss_pred EEEEecc
Confidence 9999987
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.37 E-value=0.021 Score=51.64 Aligned_cols=116 Identities=8% Similarity=0.073 Sum_probs=65.5
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
..+..+.+.+++++++.+.+|.+++.+.+.++....+ . ..-......+.++.+.+++ .+++++ .++.| .+...
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~---~-~~~~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~D 277 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGEL---L-SPLRRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQD 277 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCC---B-CTTSSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESS
T ss_pred CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEec---c-CCcccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCC
Confidence 4577888899998887777788877643222211110 0 0000123458899998876 655554 46766 34444
Q ss_pred CCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEEC
Q 043890 311 QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDI 366 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~ 366 (509)
.++. +. .+.... .....+.++.|.+++++++.+.+|.|.-++-
T Consensus 278 gG~t-W~---~~~~~~---------~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 278 GGQT-WQ---QDVDVK---------KVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSS-CE---ECGGGT---------TSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCcc-cE---EcCccC---------CCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 4431 11 111100 0113577888887777777777787776654
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.35 E-value=0.087 Score=51.78 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEeec
Q 043890 301 KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 301 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~ 379 (509)
+|.|..||+.+++..++ .+.. .++..-.....+.+++.++ |+.++.||.++ ++.+-.++..
T Consensus 465 ~G~l~A~D~~tG~~~W~----~~~~-------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWE----HKEH-------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEE----EEES-------------SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEECCCCCEEEE----ecCC-------------CCCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecCC
Confidence 57899999998875332 1111 0111111122355666665 69999999997 7888777664
Q ss_pred cc
Q 043890 380 EY 381 (509)
Q Consensus 380 ~~ 381 (509)
..
T Consensus 527 ~g 528 (582)
T 1flg_A 527 SG 528 (582)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.32 E-value=0.06 Score=49.15 Aligned_cols=26 Identities=12% Similarity=0.382 Sum_probs=20.1
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEe
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWK 147 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd 147 (509)
.-..|+| .|+|++ +.+..+|.|.+++
T Consensus 32 ~P~~ia~--~pdG~l-~V~e~~g~I~~i~ 57 (352)
T 2ism_A 32 VPWALAF--LPDGGM-LIAERPGRIRLFR 57 (352)
T ss_dssp CEEEEEE--CTTSCE-EEEETTTEEEEEE
T ss_pred CceEEEE--cCCCeE-EEEeCCCeEEEEE
Confidence 3578999 999974 4556679999888
No 295
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.32 E-value=0.25 Score=52.71 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=28.7
Q ss_pred ccceEEEEECCC------CCeEEeecC-CCeEEEEEccCCCC
Q 043890 40 VDIISAIEFDKT------GDHLATGDR-GGRVVLFERTDTKD 74 (509)
Q Consensus 40 ~~~I~~v~~s~~------~~~la~g~~-dg~i~lw~~~~~~~ 74 (509)
.+.|.|+++.|. ++++|+|.. |++|+|+++.+.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence 468999999864 479999996 99999999986443
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.29 E-value=0.084 Score=47.29 Aligned_cols=147 Identities=10% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC----CCc--EEEEEEc---CCeEEEEECC-
Q 043890 242 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCN--MLAYSSS---KGSIRLIDLR- 310 (509)
Q Consensus 242 ~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~--~l~~~~~---dg~i~vwd~~- 310 (509)
..+++.. ..+-+.+||+ +++.+..+ . ...++.+..-|+ +.. ++++... +++|.+|++.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~--------~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY--------N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE--------C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc--------c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 3444444 7789999999 56654332 1 145666666653 201 3333333 5789999774
Q ss_pred -CCcccCCceeeeccccCCCCccccccccccEEEEEE--ecC-CC-EEEEe-cCCeEEEEECCCC------CCceEEEee
Q 043890 311 -QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKF--AKD-GR-HILSR-DYMTLKLWDINMD------SGPVATFQV 378 (509)
Q Consensus 311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~s~-~~~~i~iwd~~~~------~~~~~~~~~ 378 (509)
++. +..+.....+ +..-...+..+++ +|. ++ +++.. .++.+..|++... .+.++++..
T Consensus 109 ~~~~-----l~~i~~~~~p-----v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 109 KNGT-----LQSMTDPDHP-----IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp TTCC-----EEECSCTTSC-----EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred CCCc-----eeeccccccC-----cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 332 2222110000 0000034666777 663 54 34444 3599999988421 233455544
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCC
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA 425 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 425 (509)
... .. .|...+....|+.+-++..|..|+.+
T Consensus 179 gsq-~E---------------gcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 179 NSQ-TE---------------GMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp SSC-EE---------------EEEEETTTTEEEEEETTTEEEEEECS
T ss_pred CCC-cc---------------eEEEcCCCCeEEEecccceEEEEeCC
Confidence 322 11 78888888899999999776666644
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.28 E-value=0.2 Score=50.94 Aligned_cols=113 Identities=11% Similarity=0.002 Sum_probs=66.3
Q ss_pred CeEEEEECCCCCEEEEE--cC-CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA--DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
....|+++|.+..|+.. .+ +.|...++..... ..+ +...-.....|++++.+.+++++=...+.|..+|
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~l-------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEE-------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 47789999976666655 33 7888888875432 221 1122356789999987634444444567899999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C-CeEEEEECCC
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-MTLKLWDINM 368 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~ 368 (509)
+..... +.+..... .-....+|++. +..|+.++ . +.|...|..+
T Consensus 587 ~dG~~~-----~~v~~~~~---------~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 587 VNGGNR-----KTILEDEK---------RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp TTSCSC-----EEEEECTT---------TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred cCCCce-----EEEecCCC---------ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 876542 22221100 00234466664 33555543 3 8888888665
No 298
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.26 E-value=0.098 Score=46.91 Aligned_cols=120 Identities=6% Similarity=-0.038 Sum_probs=70.3
Q ss_pred CeEEEEECCCCCEEEEE--c-CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEE
Q 043890 232 HINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 308 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd 308 (509)
....+++.|.+..|..+ . .+.|...+++.... ..+ ....-.....|++++++.+++++=...+.|..+|
T Consensus 123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~-------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FII-------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEE-------EECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 46788998876666555 2 57888888774322 111 1112245689999997634555545678899999
Q ss_pred CCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEEe
Q 043890 309 LRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATFQ 377 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~ 377 (509)
+.... .+.+.... ......+++.. +.++.+-. .+.|..+|..+ ++....+.
T Consensus 195 ~dG~~-----~~~~~~~~-----------~~~P~glav~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 246 (318)
T 3sov_A 195 LDGTN-----RQAVVKGS-----------LPHPFALTLFE-DILYWTDWSTHSILACNKYT-GEGLREIH 246 (318)
T ss_dssp TTSCS-----CEEEECSC-----------CSCEEEEEEET-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred CCCCc-----eEEEecCC-----------CCCceEEEEeC-CEEEEEecCCCeEEEEECCC-CCceEEEe
Confidence 87543 22222111 13456677753 33333433 38999999875 44444443
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.22 E-value=0.059 Score=47.83 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred eEEEEECCCCCEEE-EE-cCCeEEEEEccCCCceeeEeeccCCcc-CCCccceEEEEE---eCCCCcEEEEEEc------
Q 043890 233 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEF---HPTHCNMLAYSSS------ 300 (509)
Q Consensus 233 v~~i~~~~~~~~l~-~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~---~~~~~~~l~~~~~------ 300 (509)
-.++.|++....|. +. ..+.|..||...+.. ..+ .+..... ......+..|.| .|++ +++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~ 91 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNF 91 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccc
Confidence 34678977555555 44 799999999875432 121 1110000 011224589999 6886 77776442
Q ss_pred -------CCeEEEEECC---CCcccCCceeeeccccCCCCcccccc-ccccEEEEEEecCCCEEEEec-C-CeEEEEECC
Q 043890 301 -------KGSIRLIDLR---QSALCDSHAILFEEQEAPGSRSFFTE-IIASISDIKFAKDGRHILSRD-Y-MTLKLWDIN 367 (509)
Q Consensus 301 -------dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~ 367 (509)
+..|..||+. +++.. ................+ -......++..++|+..++++ . +.|...+..
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccCCCCEEEEEcCCcCCCCCEE----EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 6789999999 66542 21211100000000000 013588999999999888865 4 566666555
Q ss_pred CCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 043890 368 MDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
++.+..+........ .....+.++++|+|+.|++....|.|.-+|+.+
T Consensus 168 --G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 --GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp --SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred --CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 334443322111100 011123899999999988887799999999884
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.09 E-value=0.12 Score=47.33 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=98.8
Q ss_pred ECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcccCC
Q 043890 238 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDS 317 (509)
Q Consensus 238 ~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 317 (509)
...+|.-++.+.++.||.-++.... .++.+..+ .. -.-..|..+..+|+| ++||..+. ..|.|-.+..+.....
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L~~~--~~-i~f~~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDS-LYHSLNFS--RH-LVLDDTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCS-SCEEEECT--TT-CCCCTTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEECCEEEEEECCCCC-cceEEecC--cc-cccCceeEEEECCCC-CEEEEecC-CeEEEEEecCccccCc
Confidence 4567888888877899998887543 34332111 00 012256789999999 88888754 5799998884321111
Q ss_pred --------ceeeeccccCCCCccccccccccEEEEEEecC---CCEEEE-ecCCeEEEEECCCC-CCceEEEeecccccc
Q 043890 318 --------HAILFEEQEAPGSRSFFTEIIASISDIKFAKD---GRHILS-RDYMTLKLWDINMD-SGPVATFQVHEYLRP 384 (509)
Q Consensus 318 --------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~ 384 (509)
..+.+...... .....+|..+.|+|- +..|++ -+|+.|++||+... .++. .+.....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~--- 171 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEE------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN--- 171 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS---
T ss_pred ccccccccceeEEEcCCcc------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc---
Confidence 11222222100 012368999999994 445665 56799999999852 2333 3432111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEee--CCCcEEEE
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGS--YSNLFRVF 422 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw 422 (509)
.+.....+..|.+++|.+++-.|...+ .+|.|+-.
T Consensus 172 ---~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ---SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ---ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 011122334456899999887777644 77887654
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.04 E-value=0.0031 Score=63.57 Aligned_cols=120 Identities=11% Similarity=-0.009 Sum_probs=64.8
Q ss_pred eEEEEECCCCCEEEEE--cC-CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEEC
Q 043890 233 INSISNNSDGETFISA--DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDL 309 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~ 309 (509)
...|+++|.+.+|+.+ .. +.|.++++...... .+ ....-.....|+|+|++.+++++-...+.|.++|+
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l-------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE-------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE-------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 4567888865555554 33 77887777643211 11 11112345689999987455555556788999998
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceEEE
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVATF 376 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~ 376 (509)
.... .+.+..... .......|++..+ .++++.. .+.|..+|..+ ++.+..+
T Consensus 570 dG~~-----~~~~~~~~~---------~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~-G~~~~~i 621 (699)
T 1n7d_A 570 NGGN-----RKTILEDEK---------RLAHPFSLAVFED-KVFWTDIINEAIFSANRLT-GSDVNLL 621 (699)
T ss_dssp SSSC-----CEEECCCSS---------SCSSCCCCEEETT-EEEEECSTTTCEEEEETTT-EEEEECC
T ss_pred CCCc-----eEEEEecCC---------cCCCceEeEEECC-EEEEEeCCCCeEEEEEccC-CCceEEe
Confidence 7543 122221100 0012334555543 3333333 38899998765 3444433
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.02 E-value=0.19 Score=45.78 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=20.3
Q ss_pred ccceeeEEEEcCCCceEEEeeCCCeEEEEe
Q 043890 118 EKINKIRWCQTANGALFLLSTNDKTIKFWK 147 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~~~dg~i~vwd 147 (509)
.....|+| .|+|+ |+.+..+|.|.+++
T Consensus 29 ~~P~~ia~--~pdG~-l~V~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAP--LGGGR-YLVTERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEE--EETTE-EEEEETTTEEEEEC
T ss_pred CCCeEEEE--cCCCe-EEEEeCCCEEEEEe
Confidence 34678999 88886 55556679998887
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.01 E-value=0.32 Score=48.14 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=93.4
Q ss_pred CeEEEEECCCCCEEEEE--cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc--CCeEEEE
Q 043890 232 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 307 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~--dg~i~vw 307 (509)
....+++++.++.|+.+ ..+.|.+.+++..... .+. ...-.....|+++|.+ ..|..+.. .+.|...
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~l~-------~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~ 155 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLF-------WQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA 155 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-EEE-------eCCCCCCceEEEecCC-CeEEEeccCCCCEEEEE
Confidence 46789998866666655 6899999998854321 111 1223346789999976 34444442 4678777
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEECCCCCCceEEEee-cccccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWDINMDSGPVATFQV-HEYLRP 384 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~-~~~~~~ 384 (509)
++..... ..+-... ....+.+++++++..|+.++ .+.|..+|+.. .....+.. ....
T Consensus 156 ~~dG~~~-----~~l~~~~-----------~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~~~~~-- 215 (619)
T 3s94_A 156 GMDGSSR-----FIIINSE-----------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKGSLPH-- 215 (619)
T ss_dssp ETTSCSC-----EEEECSS-----------CSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC-----------
T ss_pred ECCCCce-----EEEEeCC-----------CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeCCCCC--
Confidence 8775432 2222111 13578999999877777764 38888888874 22222211 1000
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 385 KLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 385 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
-+.+++..+ ....+-..++.|...|..+|+...
T Consensus 216 -------------P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 216 -------------PFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp -------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred -------------ceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 016777655 444444567889999988776554
No 304
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.99 E-value=0.2 Score=45.60 Aligned_cols=28 Identities=7% Similarity=0.302 Sum_probs=21.6
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEec
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKV 148 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~ 148 (509)
....|+| .|+|+.|+.+...|.|++++.
T Consensus 19 ~P~~i~~--~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAF--LPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SEEEEEE--CSTTCCEEEEETTTEEEEEET
T ss_pred CcEEEEE--cCCCCEEEEEeCCceEEEEeC
Confidence 4678999 999984556667899998874
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.84 E-value=0.29 Score=45.00 Aligned_cols=153 Identities=7% Similarity=0.084 Sum_probs=89.2
Q ss_pred CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCc--------
Q 043890 301 KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGP-------- 372 (509)
Q Consensus 301 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~-------- 372 (509)
++.||.-++..... .+.+..+.... -..|..+..+|+|++||..++..|.|..+..+...
T Consensus 40 ~n~iR~~~i~~~~~----Yk~L~~~~~i~--------f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 40 DNIIRWYNVLTDSL----YHSLNFSRHLV--------LDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTEEEEEETTTCSS----CEEEECTTTCC--------CCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred CCEEEEEECCCCCc----ceEEecCcccc--------cCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 47788878774321 34443321000 02567799999999999988899999999832111
Q ss_pred -eE--EEeecccccccccccccCCCccceeeEEEcCC---CCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEE
Q 043890 373 -VA--TFQVHEYLRPKLCDLYENDSIFDKFECCLSGD---GLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQ 446 (509)
Q Consensus 373 -~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 446 (509)
++ .+..... ....-.+|..+.|+|- +..|++-..|+.|++||+......-..++-.. . .|
T Consensus 108 ~~q~~ty~l~~~---------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~---~--~f 173 (452)
T 3pbp_A 108 AFQIFHYSIDEE---------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPN---N--SF 173 (452)
T ss_dssp TTEEEEEEGGGC---------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCC---S--EE
T ss_pred ccceeEEEcCCc---------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccc---c--cc
Confidence 11 1111100 0011123448999995 46899999999999999985322110222110 0 01
Q ss_pred cCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCCCcEEEEEe--c-CceEEEe
Q 043890 447 TPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPTENSIACAA--A-NSLYMYY 508 (509)
Q Consensus 447 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~--~-~~i~v~~ 508 (509)
..+ .....|.+++|.+++-.|.+.+ . |.||-++
T Consensus 174 g~d-----------------------------~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 174 GLD-----------------------------ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ESC-----------------------------SSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCC-----------------------------cccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 110 0126688999999887776654 4 6777654
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.74 E-value=0.27 Score=43.34 Aligned_cols=170 Identities=6% Similarity=0.053 Sum_probs=92.3
Q ss_pred cCeEEEEECCCCCEEEE-E-c------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC--CCcEEEEEEc
Q 043890 231 YHINSISNNSDGETFIS-A-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSS 300 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~-~-~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~~l~~~~~ 300 (509)
..|..-..+++.++++. | . .|.+.+|..+.... +.+++|-+....+....+ ..++|+.+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s---------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE---------EEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc---------ceeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 44666667888887653 3 1 47788998885432 246677655544433221 1134444443
Q ss_pred C---CeEEEEECCCCc--ccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceE
Q 043890 301 K---GSIRLIDLRQSA--LCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVA 374 (509)
Q Consensus 301 d---g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~ 374 (509)
. +.+++-++.... ...-..+..+..-.+. ....-..++..++.-..+..-+ .|.+++||+.+ +.++.
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe------a~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~ 295 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 295 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc------ccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEE
Confidence 2 588888885431 0000011111111111 1123456778888766666654 59999999998 56655
Q ss_pred EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 375 TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.-+-.... ||..+-+....-++.....|.|.--.++....+.
T Consensus 296 ~nrIS~d~---------------iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 296 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp EEECCSSC---------------EEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EeccCCCc---------------eEEecccCCCCcEEEEcCCCEEEEEEECcccEeh
Confidence 44333222 2234444444445556678888777777665544
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.52 E-value=0.46 Score=43.23 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEE
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFE 68 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~ 68 (509)
..-..++|.|+|+++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 34578999999985555 5568998886
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.49 E-value=0.41 Score=42.33 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=73.7
Q ss_pred CCCEEEEE-c-----CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-----CeEEEEEC
Q 043890 241 DGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDL 309 (509)
Q Consensus 241 ~~~~l~~~-~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-----g~i~vwd~ 309 (509)
++.+++.| . ...+.+||+.+.+.. .+.. .+.....| ..+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~-~p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWS-MLGD-MQTAREGA----GLVVA--SG-VIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEE-EEEE-CSSCCBSC----EEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEE-ECCC-CCCCcccc----eEEEE--CC-EEEEECCCCCCcccceEEEEeC
Confidence 45566655 3 246888998765422 1111 11111112 12222 45 778887764 45889998
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec------CCeEEEEECCCCCCceEEEeeccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD------YMTLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~------~~~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
.+.+. ..+.. .+..+ .....+.+ ++++++.|+ ...+.+||+.+ .. -..+.......
T Consensus 183 ~~~~W-----~~~~~--~p~~r-------~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 183 HTGHW-----TNVTP--MATKR-------SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPR 244 (301)
T ss_dssp TTTEE-----EEECC--CSSCC-------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSCC
T ss_pred CCCcE-----EeCCC--CCccc-------ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCcc
Confidence 87653 11111 11110 11112222 567666653 25789999986 22 22222111110
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
. . ..+..-++++++.|+.+ ..+.+||+.+.+..
T Consensus 245 ~-----------~---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 245 C-----------Y---VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp B-----------S---CEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred c-----------c---eeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 0 0 11222367777778765 46788888876543
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.38 E-value=0.54 Score=42.54 Aligned_cols=153 Identities=8% Similarity=0.093 Sum_probs=85.0
Q ss_pred eEEEEECC--CCC--EEEEE-c--CCeEEEEEccCCCceeeEeeccCCccCC-CccceEEEEEeCCCCcEEEEEEc----
Q 043890 233 INSISNNS--DGE--TFISA-D--DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSS---- 300 (509)
Q Consensus 233 v~~i~~~~--~~~--~l~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~~~~---- 300 (509)
...+.+.+ ++. ++++- . +..|.+|+++.......... .+.+ .-...+.+++.++| .+.++...
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd 188 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFID 188 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCSS
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeCC
Confidence 44555533 443 34443 3 67888988876543332211 1111 13457899999998 76666541
Q ss_pred -------------CCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--CCeEEEEE
Q 043890 301 -------------KGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--YMTLKLWD 365 (509)
Q Consensus 301 -------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd 365 (509)
.|.|..+|. ++ ++.+... -...+.++|+||++.|+.++ .+.|+.|+
T Consensus 189 ~~~~~~e~~~~~~~g~vyr~d~--~~-----~~~~~~~------------l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 189 PYLKSWEMHLGLAWSFVTYYSP--ND-----VRVVAEG------------FDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp HHHHHHHHHTTCCCEEEEEECT--TC-----CEEEEEE------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred cccccchhhccCCccEEEEEEC--Ce-----EEEeecC------------CcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 234444544 22 1211111 13578999999999888874 38999999
Q ss_pred CCCCCCce--EEEeecccccccccccccCCCccceeeEEEcC-CCCEEEEeeCC-CcEEEEeCC
Q 043890 366 INMDSGPV--ATFQVHEYLRPKLCDLYENDSIFDKFECCLSG-DGLRVATGSYS-NLFRVFGCA 425 (509)
Q Consensus 366 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d-g~i~iw~~~ 425 (509)
+...+... +.+.. ..... .+++.+ +|++.+++..+ +.|..|+..
T Consensus 250 ~~~~g~l~~~~~~~~-~g~PD---------------Gi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 250 KHANWTLTPLRVLSF-DTLVD---------------NISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ECTTSCEEEEEEEEC-SSEEE---------------EEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ECCCCcEecCEEEeC-CCCCc---------------eEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 97433221 12211 11111 688888 58877766544 345445443
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.26 E-value=0.7 Score=42.58 Aligned_cols=170 Identities=6% Similarity=0.066 Sum_probs=96.9
Q ss_pred cCeEEEEECCCCCEEEE-E-c------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCC--CcEEEEEEc
Q 043890 231 YHINSISNNSDGETFIS-A-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSS 300 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~-~-~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~l~~~~~ 300 (509)
..|..-..+++.++++. | . .|.+.+|..+.... +.+++|-.....+....+. .++|+.+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s---------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE---------EEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc---------chheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 44666677888888663 3 1 47788999886442 2567776666555443221 134555544
Q ss_pred C---CeEEEEECCCCcccCC--ceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceE
Q 043890 301 K---GSIRLIDLRQSALCDS--HAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVA 374 (509)
Q Consensus 301 d---g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~ 374 (509)
. +.+++.++.....-.. ..+..+..-.+. ....-..++..++....+..-+ .|.+++||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe------~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~ 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc------cccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeee
Confidence 3 7899998865310000 011111111111 1123456788888777666654 59999999998 56555
Q ss_pred EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 375 TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.-+-.... ||..+-+....-++.....|.|.--.++....+.
T Consensus 295 ~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred eecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 44332222 2244444454556666788888887777665554
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.19 E-value=0.72 Score=41.96 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcc
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERT 70 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~ 70 (509)
..-..|+|.|+|+.|+++...|.|++++.+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 345789999999934445567899998743
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.18 E-value=0.11 Score=42.82 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=36.0
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCc-cCCCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN-MEDLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
..+..|.+.|+|.+.++. |+.++-....+..... ... .... -...-...+.+.|.+++ .++++. ++.
T Consensus 135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~-wl~-~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~ 202 (236)
T 1tl2_A 135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDN-WLA-RATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGK 202 (236)
T ss_dssp GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCC-HHH-HCEEEESSSGGGEEEEEECTTS-CEEEEE--TTE
T ss_pred CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcc-ccc-ccceeccCCcceEEEEEECCCC-cEEEEe--CCe
Confidence 457889999999999888 8875443222111000 000 0000 11222344557788887 666555 663
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.13 E-value=0.56 Score=42.65 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=62.9
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC---CCcEEEEEEcC-----Ce
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----GS 303 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~~l~~~~~d-----g~ 303 (509)
....++|.|+|+++++-.+|.|++++ .++ ...+..+. ...........|+++|+ +..++++-... +.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 46789999999976666669999998 332 11111111 12222456789999998 42444444433 67
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
|..|++....+. .....+..... . .-..| ....++|.|||.+.++.
T Consensus 107 v~r~~~~~~~~~-~~~~l~~~~p~--~--~~~~h--~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGV-LDRVVLDGIPA--R--PHGLH--SGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEE-EEEEEEEEECC--C--TTCCC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcC-ceEEEEEeCCC--C--CCCCc--CCceEEECCCCCEEEEE
Confidence 888887754210 00111111000 0 00112 23579999999877773
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.05 E-value=1.3 Score=43.81 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred eEEEcCCCCEEE-EeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCC-CCCcccCCCcc
Q 043890 400 ECCLSGDGLRVA-TGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGS-DVPGVDTNGNS 477 (509)
Q Consensus 400 ~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 477 (509)
.+++...++.|+ +-+..+.|.+.+++ |+.....+.......+.+++.|.....-..++- ... .+....+.|..
T Consensus 393 glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g----~~~~~I~r~~~dG~~ 467 (628)
T 4a0p_A 393 DLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ----ERSPKIERAALDGTE 467 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEE----TTEEEEEEEETTSCS
T ss_pred eEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecC----CCCCeEEEEeCCCCC
Confidence 788888776555 55567899999987 555542344455667888888754442211110 000 11122222221
Q ss_pred cc-----cccceEEEEEcCCCcEEEEEec--CceEEE
Q 043890 478 FD-----FTTKLLHLAWHPTENSIACAAA--NSLYMY 507 (509)
Q Consensus 478 ~~-----~~~~i~~~~~~p~~~~la~~~~--~~i~v~ 507 (509)
.. --...+.|++++.+..|..+.. +.|..+
T Consensus 468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~ 504 (628)
T 4a0p_A 468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESS 504 (628)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEE
Confidence 10 0123578999998877777765 455444
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.91 E-value=0.3 Score=40.35 Aligned_cols=108 Identities=12% Similarity=0.001 Sum_probs=64.2
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccc--------eEEEEEeCCCCcEEEEEEcCCe
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV--------ITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
.+..++|+|+|.+.++ .+|.++-.+..+.... ...+.... ..++.|.|++ .+.++ .||.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~---------~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND---------NWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC---------CHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcc---------cccccccEecccccccceEEEECCCC-CEEEe--CCCE
Confidence 5779999999998777 7787666655432210 11111112 4789999998 66666 6699
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEE
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLK 362 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 362 (509)
|.-++..+... ..+-... ..+-..-=..+..|.|.|+|.+.+.. ++.++
T Consensus 109 iyr~~pP~~~~-----~~Wl~~a----~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 109 LYKASPPQSDT-----DNWIARA----TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp EEEESCCCSTT-----CCHHHHS----EEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred EEEeCCCcCCC-----Cceeccc----cEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 98887643221 0110000 00000000367999999999999888 77754
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.89 E-value=1.5 Score=43.27 Aligned_cols=103 Identities=11% Similarity=-0.029 Sum_probs=52.8
Q ss_pred eEEEcCCCCEEE-EeeCCCcEEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCccc
Q 043890 400 ECCLSGDGLRVA-TGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSF 478 (509)
Q Consensus 400 ~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (509)
.+++...++.|+ +-+..+.|.+.+++.. .....+.......+.+++.|.....-..++ .....+....+.|...
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~----g~~~~I~r~~~dG~~~ 470 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDW----GEIPKIERAALDGSDR 470 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEEC----SSSCEEEEEETTSCSC
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecC----CCCCEEEEEccCCCcc
Confidence 778876555444 4456788999988744 333133334455677888776443211111 0001111122222210
Q ss_pred -----ccccceEEEEEcCCCcEEEEEec--CceEEE
Q 043890 479 -----DFTTKLLHLAWHPTENSIACAAA--NSLYMY 507 (509)
Q Consensus 479 -----~~~~~i~~~~~~p~~~~la~~~~--~~i~v~ 507 (509)
.--...+.|++++++..|.++.. +.|..+
T Consensus 471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 00134578899988877777765 444443
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.89 E-value=0.61 Score=44.07 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=63.3
Q ss_pred cCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccC--CCccceEEEEEeCC---CCcEEEEEEc----
Q 043890 231 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPT---HCNMLAYSSS---- 300 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~---~~~~l~~~~~---- 300 (509)
...+.++|.|+|+++++- ..+.|++++..++.. ..+..+. ..+. .....+..|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~-~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVP-EIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECT-TCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCC-ccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 346799999999988887 445788887654332 1121111 1111 13567789999995 4244444432
Q ss_pred --------CCeEEEEECCCCccc-CCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec
Q 043890 301 --------KGSIRLIDLRQSALC-DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD 357 (509)
Q Consensus 301 --------dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 357 (509)
...|..|++...... ......+.... . -..| ....|+|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~----~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--S----SKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--C----CSSC--CEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--C----CCCC--CCCeEeECCCCeEEEEEC
Confidence 235666665432110 00011111110 0 0123 468899999999877743
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.87 E-value=0.87 Score=40.23 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=97.8
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-------CCeEE
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIR 305 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-------dg~i~ 305 (509)
|.-=.|-. .+.|+-..+..|+-|++.......++.+-. ..+. ...|..-..+++. ++++..+- .|.+.
T Consensus 109 VvfWkWis-~~~L~lVT~taVyHWs~~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 109 VTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp EEEEEECS-SSEEEEEESSEEEEEESSTTCCCEEEEECC-GGGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEecC-CCeEEEEcCCcEEEEcccCCCCCceeeecc-hhcc--cceEEEEEECCCC-CEEEEEeEeccCCccceeEE
Confidence 33334433 234555556689999998654444443222 2332 4678888889998 66654432 36778
Q ss_pred EEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCC-----EEEEec---C-CeEEEEECCCC--CCceE
Q 043890 306 LIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGR-----HILSRD---Y-MTLKLWDINMD--SGPVA 374 (509)
Q Consensus 306 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-----~l~s~~---~-~~i~iwd~~~~--~~~~~ 374 (509)
+|..+.+. ...+++| ...... +-.+|. +++.+. . ++++|-++..+ +.+.
T Consensus 184 LYS~er~~-----sQ~ieGh------------aa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~- 243 (365)
T 2xzh_A 184 LYSVDRKV-----SQPIEGH------------AASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP- 243 (365)
T ss_dssp EEETTTTE-----EEEECCS------------EEEEEE--ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC-
T ss_pred EEeecccc-----cceeeee------------eeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC-
Confidence 88877664 2444443 222222 222221 333331 2 68999998542 1111
Q ss_pred EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 375 TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
+......+.-..+.. .-++| ++..|+.-..++.-+.-|.|++||+.+|.++. .-.-...++..
T Consensus 244 -f~kk~vdi~fppea~---~DFPV-amqvs~kygviyviTK~G~ihlyDleTgt~i~-~nrIS~d~iF~ 306 (365)
T 2xzh_A 244 -FPKKAVDVFFPPEAQ---NDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIY-MNRISGETIFV 306 (365)
T ss_dssp -CCCEEEEECCCTTCT---TCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEE
T ss_pred -cccccceeeCCcccc---CCceE-EEEecccCCEEEEEeCCcEEEEEEcccCcEEE-EeccCCCceEE
Confidence 100000000000000 00111 67788888889999999999999999999987 44444444443
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.74 E-value=1.1 Score=40.40 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred ccCeEEEEECCCCCEEEEE-cCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCC---CCcEEEEEE--cCCe
Q 043890 230 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGS 303 (509)
Q Consensus 230 ~~~v~~i~~~~~~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~~l~~~~--~dg~ 303 (509)
-...+.++|.|+|.++++- ..|.|++++...+... .+..+ +............|+++|+ +..+.++-+ .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3457899999999988888 5999999976544321 11111 1122334567889999995 214444322 3456
Q ss_pred EEEEECCCCc----ccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEe
Q 043890 304 IRLIDLRQSA----LCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSR 356 (509)
Q Consensus 304 i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 356 (509)
|.-|.+.... ...+....+..... -..| .-..|.|.|||.+.++.
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEEE
Confidence 6667666522 11111111211100 1123 34679999999988774
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.41 E-value=1.3 Score=39.05 Aligned_cols=108 Identities=7% Similarity=0.008 Sum_probs=55.5
Q ss_pred CCCcEEEEEEcC-------CeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C---
Q 043890 290 THCNMLAYSSSK-------GSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y--- 358 (509)
Q Consensus 290 ~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~--- 358 (509)
++ ++++.|+.+ ..+.+||+.+.+. ..+.. .+..+ .....+. -++++++.|+ +
T Consensus 155 ~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-----~~~~~--~p~~r-------~~~~~~~--~~~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 155 GG-LLYAVGGYDVASRQCLSTVECYNATTNEW-----TYIAE--MSTRR-------SGAGVGV--LNNLLYAVGGHDGPL 217 (302)
T ss_dssp TT-EEEEECCEETTTTEECCCEEEEETTTTEE-----EEECC--CSSCC-------BSCEEEE--ETTEEEEECCBSSSS
T ss_pred CC-EEEEEeCCCCCCCccccEEEEEeCCCCcE-----EECCC--Ccccc-------ccccEEE--ECCEEEEECCCCCCc
Confidence 44 677777643 3588999887652 11111 11110 1111222 2567777763 1
Q ss_pred --CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCC-----cEEEEeCCCCcee
Q 043890 359 --MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN-----LFRVFGCAPGSTE 430 (509)
Q Consensus 359 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~ 430 (509)
..+.+||+.+ .. -..+........ . ......++++++.|+.++ .+.+||+.+.+..
T Consensus 218 ~~~~~~~yd~~~-~~-W~~~~~~~~~r~-----------~---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 218 VRKSVEVYDPTT-NA-WRQVADMNMCRR-----------N---AGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp BCCCEEEEETTT-TE-EEEECCCSSCCB-----------S---CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ccceEEEEeCCC-CC-EeeCCCCCCccc-----------c---CeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 4788999885 22 222221111100 0 112223677778887653 4889998876544
No 321
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.24 E-value=1.5 Score=38.75 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=70.8
Q ss_pred EECCCCCEEEEEc---CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-CCeEEEEECCCC
Q 043890 237 SNNSDGETFISAD---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDLRQS 312 (509)
Q Consensus 237 ~~~~~~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-dg~i~vwd~~~~ 312 (509)
.|+++++.|+-.+ ++.-.||.+.......+ .+..+.. ..+++++ +.|+-.+. ...|.+-++..+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-------~lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-------KIKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-------EEESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-------EEeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence 5666777777553 44444444432221111 1222211 3457777 55554443 677888888766
Q ss_pred cccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--C-CeEEEEECCCCCCceEEEeeccccccccccc
Q 043890 313 ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEYLRPKLCDL 389 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 389 (509)
.. +.+.. +... ..+.|++.+|+-.. + ..|..-++.. .....+....
T Consensus 178 ~~-----~~l~~--------------~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt~~~--------- 226 (302)
T 3s25_A 178 SE-----ALFYD--------------CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN--PNPVVLTEAN--------- 226 (302)
T ss_dssp EE-----EEEEC--------------SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS--CCCEECSCSC---------
T ss_pred CE-----EEEeC--------------CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC--CCeEEEeCCC---------
Confidence 42 22211 1122 23569999888753 2 3565556653 3334443211
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeeC--CCcEEEEeCC
Q 043890 390 YENDSIFDKFECCLSGDGLRVATGSY--SNLFRVFGCA 425 (509)
Q Consensus 390 ~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~ 425 (509)
...|+|++++|+-+.. .+.|..-+++
T Consensus 227 ----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 227 ----------IEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp ----------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred ----------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence 2347888888876533 3566666665
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.02 E-value=1.8 Score=38.36 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=72.9
Q ss_pred CCCEEEEE-c-----CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-----CeEEEEEC
Q 043890 241 DGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDL 309 (509)
Q Consensus 241 ~~~~l~~~-~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-----g~i~vwd~ 309 (509)
++.+++.| . -..+.+||+.+.+.. .+. .+......-..+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~-----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVA-----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEE-ECC-----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEe-ECC-----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 45566655 2 246888998865422 110 11111111122222 44 778887764 45889998
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-C-----CeEEEEECCCCCCceEEEeeccccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
.+.+. ..+.. .+..+ .....+.+ ++++++.|+ + ..+.+||+.+ .. -..+.......
T Consensus 192 ~~~~W-----~~~~~--~p~~r-------~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r 253 (308)
T 1zgk_A 192 ERNEW-----RMITA--MNTIR-------SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHRR 253 (308)
T ss_dssp TTTEE-----EECCC--CSSCC-------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSCC
T ss_pred CCCeE-----eeCCC--CCCcc-------ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCCc
Confidence 87652 11111 11110 11122222 667777653 1 5789999886 22 22221111100
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
. . ..+.. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 254 ~-----------~--~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 254 S-----------A--LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp B-----------S--CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred c-----------c--eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 0 0 02222 367777777754 35788888876544
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.94 E-value=2.1 Score=38.81 Aligned_cols=31 Identities=6% Similarity=-0.025 Sum_probs=20.0
Q ss_pred EcCCCCEEEEeeCCC------cEEEEeCCCCceeeee
Q 043890 403 LSGDGLRVATGSYSN------LFRVFGCAPGSTEATT 433 (509)
Q Consensus 403 ~s~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~ 433 (509)
...++++++.|+.++ .|.++++++++.+...
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 335778888888653 4666788887776533
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.81 E-value=2 Score=37.93 Aligned_cols=149 Identities=7% Similarity=0.040 Sum_probs=72.8
Q ss_pred CCCEEEEE-cC------CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc---------CCeE
Q 043890 241 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------KGSI 304 (509)
Q Consensus 241 ~~~~l~~~-~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~---------dg~i 304 (509)
++.+++.| .+ ..+.+||..+.... .+- ..+.....| ..+.+ ++ ++++.|+. -..+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~-~~p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWH-TKP-SMLTQRCSH----GMVEA--NG-LIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEE-EEC-CCSSCCBSC----EEEEE--TT-EEEEECCEESCTTTCEECCCE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceE-eCC-CCcCCccee----EEEEE--CC-EEEEECCCCCCCCcccccceE
Confidence 45566665 33 46888998865422 111 111111112 12222 44 67777764 3458
Q ss_pred EEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC------CeEEEEECCCCCCceEEEee
Q 043890 305 RLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY------MTLKLWDINMDSGPVATFQV 378 (509)
Q Consensus 305 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------~~i~iwd~~~~~~~~~~~~~ 378 (509)
.+||+.+.+. ..+.. .+..+ ..-..+.+ ++++++.|+. ..+.+||+.+ .. -..+..
T Consensus 172 ~~yd~~~~~W-----~~~~~--~p~~r-------~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~ 233 (306)
T 3ii7_A 172 EVYDPATETW-----TELCP--MIEAR-------KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL-NE-WKMVSP 233 (306)
T ss_dssp EEEETTTTEE-----EEECC--CSSCC-------BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT-TE-EEECCC
T ss_pred EEeCCCCCeE-----EECCC--ccchh-------hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC-Cc-EEECCC
Confidence 8999988752 11111 11000 11112222 5677776531 5688999886 22 222211
Q ss_pred cccccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 379 HEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
...... . ..++. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 234 ~p~~r~-----------~--~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 234 MPWKGV-----------T--VKCAA-VGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CSCCBS-----------C--CEEEE-ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCCCcc-----------c--eeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 111100 0 02222 267778888754 46888998876544
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.60 E-value=2.2 Score=37.60 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=64.3
Q ss_pred EEecCCCEEEEec---C--CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeC-CCc
Q 043890 345 KFAKDGRHILSRD---Y--MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY-SNL 418 (509)
Q Consensus 345 ~~s~~~~~l~s~~---~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~ 418 (509)
.|++++++|+-.+ + ..|+..++. +.....+..+.. ..++++++.|+-.+. ..+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~lt~~~~-------------------~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKKIKNHYL-------------------FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT--SCCCEEEESSCC-------------------CCSEEETTEEEEECTTTCC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC--CCCeEEEeCCCc-------------------eEeeEECCEEEEEeCCCce
Confidence 6788888888764 3 445555555 344445544321 235678888886654 678
Q ss_pred EEEEeCCCCceeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccc--cccceEEEEEcCCCcEE
Q 043890 419 FRVFGCAPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFD--FTTKLLHLAWHPTENSI 496 (509)
Q Consensus 419 i~iw~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l 496 (509)
|+.-+++.+.... .+.+ +.. ..+.|++...... .+..+..+...++.|.... ....+ ..|+|++.+|
T Consensus 169 Iy~~~l~g~~~~~-l~~~---~~~-~~~~P~g~~iy~t----~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~I 237 (302)
T 3s25_A 169 LYRYDTASQSEAL-FYDC---NCY-KPVVLDDTNVYYM----DVNRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLI 237 (302)
T ss_dssp EEEEETTTTEEEE-EECS---CEE-EEEEEETTEEEEE----EGGGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEE
T ss_pred EEEEECCCCCEEE-EeCC---Ccc-ceeeecCCEEEEE----EcCCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEE
Confidence 8888887665443 3332 222 2344655542111 1112223334444443210 11223 3477788777
Q ss_pred EEEe
Q 043890 497 ACAA 500 (509)
Q Consensus 497 a~~~ 500 (509)
..++
T Consensus 238 y~~~ 241 (302)
T 3s25_A 238 FYQR 241 (302)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.49 E-value=5.7 Score=42.82 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=84.9
Q ss_pred CEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEE-------cCCeEEEEECCCCccc
Q 043890 243 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDLRQSALC 315 (509)
Q Consensus 243 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~ 315 (509)
+.|+...+..|+-|++........+.+-. ..+. ...|..-..+++. ++++..+ ..|.+.+|....+.
T Consensus 117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~-- 190 (1630)
T 1xi4_A 117 NTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV-- 190 (1630)
T ss_pred CeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc--
Confidence 34444455679999997533322211100 1222 4678888888888 6665433 24777888777654
Q ss_pred CCceeeeccccCCCCccccccccccEEEEEEe--c-CCCEEEEec----CCeEEEEECCCCCCceEEEeecccccccccc
Q 043890 316 DSHAILFEEQEAPGSRSFFTEIIASISDIKFA--K-DGRHILSRD----YMTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~-~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
...+++| .+....+... + ...+++.+. .+.++|-++..+...-..+......+.-..+
T Consensus 191 ---sQ~iegh------------a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~ 255 (1630)
T 1xi4_A 191 ---SQPIEGH------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (1630)
T ss_pred ---chhhhHh------------HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc
Confidence 1333333 2222222221 1 112222221 2789998886420000011000000000000
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
....-++ .+..++.-..+..-+.-|.|++||+.+|.++.
T Consensus 256 ~~~Dfpv----~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 256 AQNDFPV----AMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cccCcce----EEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 0001111 57778888888889999999999999999876
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.17 E-value=5.5 Score=42.98 Aligned_cols=170 Identities=6% Similarity=0.069 Sum_probs=84.1
Q ss_pred cCeEEEEECCCCCEEEE-E-c------CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC--CCCcEEEEEEc
Q 043890 231 YHINSISNNSDGETFIS-A-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 300 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~-~-~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~~l~~~~~ 300 (509)
..|..-..+++.++++. | . .|.+.+|..+.+.. +.+.+|-+....+.... ...++++.+..
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc---------hhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 34666666788887653 3 2 48888998876432 25666765554444431 11134433332
Q ss_pred ---CCeEEEEECCCCcccCCc--eeeeccccCCCCccccccccccEEEEEEecCCCEEEEec-CCeEEEEECCCCCCceE
Q 043890 301 ---KGSIRLIDLRQSALCDSH--AILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD-YMTLKLWDINMDSGPVA 374 (509)
Q Consensus 301 ---dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~ 374 (509)
.+.++|-++.....-..+ .+..+..-.+ .....-..++..++....+..-+ .|.+++||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~ 294 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCc------ccccCcceEEEeccccCEEEEEecCceEEEEeccc-chhhh
Confidence 268888888553100000 0000000000 00112345566777655555544 59999999998 44443
Q ss_pred EEeecccccccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 375 TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
.-+..... ||..+-+....-++.....|.|.--.++....+.
T Consensus 295 ~~ris~~~---------------iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred hccccCCc---------------eEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 32211111 1122333332334444566766666666554443
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.73 E-value=3.7 Score=36.90 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=25.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCCC
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDTK 73 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~~ 73 (509)
..-..++|.|+|+++++-...|.|++++..+++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 445789999999988876658999988765443
No 329
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.97 E-value=4.4 Score=35.49 Aligned_cols=150 Identities=7% Similarity=0.029 Sum_probs=73.9
Q ss_pred CCCEEEEE-cC-----CeEEEEEccCCCc--eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-----CeEEEE
Q 043890 241 DGETFISA-DD-----LRINLWNLEISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLI 307 (509)
Q Consensus 241 ~~~~l~~~-~d-----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-----g~i~vw 307 (509)
++.+++.| .+ ..+.+||+.+... ...+. .+.........+.+ ++ ++++.|+.+ ..+.+|
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-----~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~ 133 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-----PMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERY 133 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-----CCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEE
Confidence 45555555 32 4688999887551 11111 11111111122222 44 777777754 368899
Q ss_pred ECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec------CCeEEEEECCCCCCceEEEeeccc
Q 043890 308 DLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD------YMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 308 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~------~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
|+.+.+. ..+..+.. .+ ..-..+. -++++++.|+ ...+.+||+.+ .. -..+.....
T Consensus 134 d~~~~~W--~~~~~~p~-----~r-------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~-~~-W~~~~~~p~ 195 (301)
T 2vpj_A 134 DPNIDQW--SMLGDMQT-----AR-------EGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHT-GH-WTNVTPMAT 195 (301)
T ss_dssp ETTTTEE--EEEEECSS-----CC-------BSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT-TE-EEEECCCSS
T ss_pred cCCCCeE--EECCCCCC-----Cc-------ccceEEE--ECCEEEEECCCCCCcccceEEEEeCCC-Cc-EEeCCCCCc
Confidence 9887652 11111110 00 1111222 2677766653 15688999885 22 222211111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
... . ..+..-++++++.|+.+ ..+.+||+.+.+..
T Consensus 196 ~r~-----------~---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 196 KRS-----------G---AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp CCB-----------S---CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ccc-----------c---ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 100 0 12222367777777764 46889998877554
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.96 E-value=4.6 Score=35.70 Aligned_cols=54 Identities=2% Similarity=-0.132 Sum_probs=28.9
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-C-----CeEEEEECCCCc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K-----GSIRLIDLRQSA 313 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~ 313 (509)
..+.+||..+.+.. .+. .+......- +++. .++ ++++.|+. + ..+.+||+.+.+
T Consensus 117 ~~~~~~d~~~~~W~-~~~-----~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 117 DSVMCYDRLSFKWG-ESD-----PLPYVVYGH-TVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEEEEETTTTEEE-ECC-----CCSSCCBSC-EEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred ceEEEECCCCCcEe-ECC-----CCCCcccce-eEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 45888998865421 111 111111111 1222 344 77778776 2 468899988765
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.00 E-value=7.6 Score=35.95 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=95.7
Q ss_pred CEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc-------CCeEEEEECCCCccc
Q 043890 243 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIRLIDLRQSALC 315 (509)
Q Consensus 243 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~ 315 (509)
+.|+...+..|+-|++........+.+-. ..+. ...|..-..+++. ++++..+- .|.+.+|..+.+.
T Consensus 117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~-- 190 (494)
T 1bpo_A 117 NTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV-- 190 (494)
T ss_dssp TEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCC--
T ss_pred CeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccc--
Confidence 44555566789999998644444433221 1232 4678888889998 66664432 3677888877664
Q ss_pred CCceeeeccccCCCCccccccccccEEEEEEecCC---CEEEEec----CCeEEEEECCCCCCceEEEeecccccccccc
Q 043890 316 DSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDG---RHILSRD----YMTLKLWDINMDSGPVATFQVHEYLRPKLCD 388 (509)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~s~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
...+++| ......+.+.-+. .+++.+. .++++|-++..+...-..+......+.-..+
T Consensus 191 ---sQ~ieGh------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 191 ---SQPIEGH------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp ---EEEECCS------------EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred ---cchheee------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 2444443 2333222222111 1333332 2789999986421000011000000000000
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeeeccCCCceeE
Q 043890 389 LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRR 443 (509)
Q Consensus 389 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 443 (509)
....-++ ++..++.-..+..-+.-|.|++||+.++.++. .-.-...++..
T Consensus 256 ~~~DFPv----amqvs~kygviyviTK~G~i~lyDleTgt~i~-~nrIs~~~iF~ 305 (494)
T 1bpo_A 256 AQNDFPV----AMQISEKHDVVFLITKYGYIHLYDLETGTCIY-MNRISGETIFV 305 (494)
T ss_dssp STTCCEE----EEEEETTTTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEE
T ss_pred cccCcee----EEEecccCCEEEEEecCceEEEEecccceeee-eecccCCceEE
Confidence 0000111 67888888889999999999999999999987 44444444443
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.73 E-value=6.4 Score=34.53 Aligned_cols=149 Identities=11% Similarity=0.072 Sum_probs=73.4
Q ss_pred CCCEEEEE-cC----CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC------CeEEEEEC
Q 043890 241 DGETFISA-DD----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDL 309 (509)
Q Consensus 241 ~~~~l~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d------g~i~vwd~ 309 (509)
++.+++.| .+ ..+.+||+.+.... .+..+ +.....| ..+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~-~~~~~-p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWY-SKLGP-PTPRDSL----AACAA--EG-KIYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEE-EEECC-SSCCBSC----EEEEE--TT-EEEEECCBBTTBSCCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEE-ECCCC-Cccccce----eEEEE--CC-EEEEECCCCCCCcEeeeEEEEeC
Confidence 45566665 43 67888898865422 21111 1111112 22222 44 778888765 45889998
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec----------CCeEEEEECCCCCCceEEEeec
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD----------YMTLKLWDINMDSGPVATFQVH 379 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----------~~~i~iwd~~~~~~~~~~~~~~ 379 (509)
.+.+. ..+.. .+..+ . .-..+. -++++++.|+ ...+.+||+.+ .. -..+...
T Consensus 126 ~~~~W-----~~~~~--~p~~r---~----~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~ 187 (306)
T 3ii7_A 126 RTESW-----HTKPS--MLTQR---C----SHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT-ET-WTELCPM 187 (306)
T ss_dssp TTTEE-----EEECC--CSSCC---B----SCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT-TE-EEEECCC
T ss_pred CCCce-----EeCCC--CcCCc---c----eeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC-Ce-EEECCCc
Confidence 87652 11111 11110 1 111122 2667666653 24588999886 22 2222211
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 380 EYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
...+. . ..+.. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 188 p~~r~-----------~--~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 188 IEARK-----------N--HGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp SSCCB-----------S--CEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred cchhh-----------c--ceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 11100 0 02222 366777777654 46888898876544
No 333
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.60 E-value=16 Score=39.00 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=45.7
Q ss_pred ccCeEEEEECCC------CCEEEEE-c-CCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeC-CCCcEEEEEEc
Q 043890 230 DYHINSISNNSD------GETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSS 300 (509)
Q Consensus 230 ~~~v~~i~~~~~------~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~~~~ 300 (509)
...|.|+++.+. ++++++| . |++|+|+++...+... .. .+.. .....++.+.. .+..+|..|-.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~-~~-----~L~~-~~~p~si~l~~~~~~~~L~igl~ 625 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH-KE-----MLGG-EIIPRSILMTTFESSHYLLCALG 625 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE-EE-----ECCS-SCCEEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE-EE-----ECCC-CCCCcEEEEEEeCCCcEEEEEeC
Confidence 346888888753 4688888 5 9999999998644332 11 1211 12333343332 22367889999
Q ss_pred CCeEEEEECC
Q 043890 301 KGSIRLIDLR 310 (509)
Q Consensus 301 dg~i~vwd~~ 310 (509)
||.+..+.+.
T Consensus 626 dG~l~~~~~d 635 (1158)
T 3ei3_A 626 DGALFYFGLN 635 (1158)
T ss_dssp TSEEEEEEEC
T ss_pred CCeEEEEEEc
Confidence 9988766554
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.71 E-value=8.2 Score=33.91 Aligned_cols=139 Identities=11% Similarity=0.055 Sum_probs=67.2
Q ss_pred CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcC-----CeEEEEECCCCcccCCceeeeccc
Q 043890 251 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDLRQSALCDSHAILFEEQ 325 (509)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 325 (509)
..+.+||+.+.... .+. .+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+. ..+..
T Consensus 90 ~~~~~~d~~~~~W~-~~~-----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W-----~~~~~- 154 (308)
T 1zgk_A 90 SALDCYNPMTNQWS-PCA-----PMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEW-----HLVAP- 154 (308)
T ss_dssp CCEEEEETTTTEEE-ECC-----CCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEE-----EECCC-
T ss_pred ceEEEECCCCCeEe-ECC-----CCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeE-----eECCC-
Confidence 46888888765421 111 11111112222222 44 777777643 4588899887652 11111
Q ss_pred cCCCCccccccccccEEEEEEecCCCEEEEec-C-----CeEEEEECCCCCCceEEEeecccccccccccccCCCcccee
Q 043890 326 EAPGSRSFFTEIIASISDIKFAKDGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKF 399 (509)
Q Consensus 326 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (509)
.+..+ ..-..+.+ ++++++.|+ + ..+.+||+.+ .. -..+......+. . .
T Consensus 155 -~p~~r-------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~-----------~--~ 209 (308)
T 1zgk_A 155 -MLTRR-------IGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER-NE-WRMITAMNTIRS-----------G--A 209 (308)
T ss_dssp -CSSCC-------BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT-TE-EEECCCCSSCCB-----------S--C
T ss_pred -CCccc-------cceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC-Ce-EeeCCCCCCccc-----------c--c
Confidence 11000 11122222 566666653 1 5688999875 22 222211111100 0 0
Q ss_pred eEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 400 ECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
.++. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 210 ~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 210 GVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 2222 267777777764 46889998876544
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.33 E-value=6.1 Score=35.37 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=18.0
Q ss_pred CeEEeecCCCeEEEEEccCCCC
Q 043890 53 DHLATGDRGGRVVLFERTDTKD 74 (509)
Q Consensus 53 ~~la~g~~dg~i~lw~~~~~~~ 74 (509)
.+++.++.||.|.-+|..+++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE
Confidence 4677888889998888888776
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.45 E-value=14 Score=34.71 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=23.2
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEccCC
Q 043890 41 DIISAIEFDKTGDHLATGDRGGRVVLFERTDT 72 (509)
Q Consensus 41 ~~I~~v~~s~~~~~la~g~~dg~i~lw~~~~~ 72 (509)
..-..++|.|+|+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 34578999999998887554457888875443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.77 E-value=12 Score=33.00 Aligned_cols=23 Identities=0% Similarity=0.108 Sum_probs=16.1
Q ss_pred CCCcEEEEEEc------CCeEEEEECCCCc
Q 043890 290 THCNMLAYSSS------KGSIRLIDLRQSA 313 (509)
Q Consensus 290 ~~~~~l~~~~~------dg~i~vwd~~~~~ 313 (509)
++ ++++.|+. -..+.+||+.+.+
T Consensus 158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 44 67777764 2458999998865
No 338
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.46 E-value=12 Score=32.64 Aligned_cols=149 Identities=12% Similarity=0.123 Sum_probs=72.2
Q ss_pred CCCEEEEE-cC-----CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC-----eEEEEEC
Q 043890 241 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDL 309 (509)
Q Consensus 241 ~~~~l~~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg-----~i~vwd~ 309 (509)
++.+++.| .+ ..+.+||..+.+.. .+. .+.........+.+ ++ ++++.|+.++ .+.+||+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~-----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~ 131 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWT-SVA-----NMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNI 131 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEE-EEC-----CCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEET
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCcee-eCC-----CCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeC
Confidence 45566655 32 45888888765422 111 11111111122222 44 7888887653 5778898
Q ss_pred CCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEec--------CCeEEEEECCCCCCceEEEeeccc
Q 043890 310 RQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRD--------YMTLKLWDINMDSGPVATFQVHEY 381 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--------~~~i~iwd~~~~~~~~~~~~~~~~ 381 (509)
.+.+. ..+.. .+..+ .... ++. -++++++.|+ ...+.+||+.+ .. -..+.....
T Consensus 132 ~~~~W-----~~~~~--~p~~r-------~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~ 193 (302)
T 2xn4_A 132 KSNEW-----FHVAP--MNTRR-------SSVG-VGV-VGGLLYAVGGYDVASRQCLSTVECYNATT-NE-WTYIAEMST 193 (302)
T ss_dssp TTTEE-----EEECC--CSSCC-------BSCE-EEE-ETTEEEEECCEETTTTEECCCEEEEETTT-TE-EEEECCCSS
T ss_pred CCCeE-----eecCC--CCCcc-------cCce-EEE-ECCEEEEEeCCCCCCCccccEEEEEeCCC-Cc-EEECCCCcc
Confidence 87652 11111 11110 1111 222 2566666653 14588999875 22 222211111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 382 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
.+. . ..++ .-++++++.|+.+ ..+.+||+.+.+..
T Consensus 194 ~r~-----------~--~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 194 RRS-----------G--AGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp CCB-----------S--CEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred ccc-----------c--ccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 100 0 0222 2367777777764 36888998876544
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.33 E-value=4.4 Score=38.72 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=55.5
Q ss_pred cEEEEEEecCCCEEEEec--CCeEEEEECCCC-----CCc---eEEEeec-ccccccccccccCCCccceeeEEEcCCCC
Q 043890 340 SISDIKFAKDGRHILSRD--YMTLKLWDINMD-----SGP---VATFQVH-EYLRPKLCDLYENDSIFDKFECCLSGDGL 408 (509)
Q Consensus 340 ~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~-----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 408 (509)
....+.++|||++++.++ +.++.++|++.- .+. ...+... .-.. .-...+|.++|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-------------GPlHt~Fd~~G~ 390 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-------------GPLHTTFDGRGN 390 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-------------CEEEEEECSSSE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-------------cccEEEECCCCc
Confidence 567789999999999975 489999998841 111 0011100 0000 012689999995
Q ss_pred EEEEeeCCCcEEEEeCCCC---------ceeeeeeccCCCce
Q 043890 409 RVATGSYSNLFRVFGCAPG---------STEATTLEASKNPM 441 (509)
Q Consensus 409 ~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~v 441 (509)
...+---|.+|.-|++... ..+...+..|..+-
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG 432 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG 432 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc
Confidence 5555568999999998743 12323667776443
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.87 E-value=14 Score=32.57 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=17.6
Q ss_pred CCCEEEEeeCCC-----cEEEEeCCCCcee
Q 043890 406 DGLRVATGSYSN-----LFRVFGCAPGSTE 430 (509)
Q Consensus 406 ~~~~l~~~~~dg-----~i~iw~~~~~~~~ 430 (509)
++++++.|+.++ .+.+||+.+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 677777777654 5788888776544
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.35 E-value=32 Score=34.42 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=77.6
Q ss_pred CCCEEEEE-cC------CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCC--eEEEEECCC
Q 043890 241 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDLRQ 311 (509)
Q Consensus 241 ~~~~l~~~-~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg--~i~vwd~~~ 311 (509)
++.+++.| .+ ..+.+||..+..... + ..+......- +++.-.++ ++++.|+.++ .+.+||+.+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~-~-----~~~p~~R~~h-~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM-I-----KSLSHTRFRH-SACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEE-C-----CCCSBCCBSC-EEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEE-C-----CCCCCCcccc-eEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 56666665 32 357888888643221 1 0111111111 22232355 7888888754 689999988
Q ss_pred CcccCCceeeeccc-cCCCCccccccccccEEEEEEecC-CCEEEEecC--------CeEEEEECCCCCCc-----eEEE
Q 043890 312 SALCDSHAILFEEQ-EAPGSRSFFTEIIASISDIKFAKD-GRHILSRDY--------MTLKLWDINMDSGP-----VATF 376 (509)
Q Consensus 312 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~--------~~i~iwd~~~~~~~-----~~~~ 376 (509)
... ..+... ..+.. .....++.+..+ +++++.|+. +.+.+||+.+ ... ...+
T Consensus 523 ~~W-----~~~~~~g~~p~~-------r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~ 589 (695)
T 2zwa_A 523 EIF-----KDVTPKDEFFQN-------SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKK 589 (695)
T ss_dssp TEE-----EECCCSSGGGGS-------CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEE
T ss_pred Cce-----EEccCCCCCCCc-------ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEc
Confidence 652 111110 00000 012233555555 666666531 4689999986 331 1222
Q ss_pred eecc-cccccccccccCCCccceeeEEEcCCCCEEEEeeCC--------CcEEEEeCCCCcee
Q 043890 377 QVHE-YLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYS--------NLFRVFGCAPGSTE 430 (509)
Q Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~ 430 (509)
.... ..+. . ..+....++++++.|+.+ ..|.+||+.+.+..
T Consensus 590 ~~~p~~~R~-----~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 590 LQHPLFQRY-----G--------SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EECGGGCCB-----S--------CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CCCCCCCcc-----c--------ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 2110 1100 0 033333437777777743 46888998876543
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.78 E-value=38 Score=33.92 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=39.3
Q ss_pred CCCCEEEEE-cC--CeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEc--C-----CeEEEEEC
Q 043890 240 SDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--K-----GSIRLIDL 309 (509)
Q Consensus 240 ~~~~~l~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~--d-----g~i~vwd~ 309 (509)
.++.+++.| .+ +.+.+||..+..... +... ...........++.+..+..++++.|+. + ..+.+||+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~--~~~~-g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKD--VTPK-DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEE--CCCS-SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEE--ccCC-CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEc
Confidence 367777776 32 378999988754221 1000 0011111222345556552278888876 2 46889999
Q ss_pred CCCc
Q 043890 310 RQSA 313 (509)
Q Consensus 310 ~~~~ 313 (509)
.+..
T Consensus 576 ~~~~ 579 (695)
T 2zwa_A 576 DAEN 579 (695)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8876
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.07 E-value=42 Score=33.94 Aligned_cols=174 Identities=12% Similarity=0.029 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCc-eeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
.|.++.-..+|++.+...+| +..++..++.. .............-....|.++.-..++ + |-.|+ ++-+..||..
T Consensus 325 ~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt-~~GL~~~~~~ 400 (758)
T 3ott_A 325 QFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-Q-LWIAT-DGSINRYDYA 400 (758)
T ss_dssp BEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-C-EEEEE-TTEEEEEETT
T ss_pred eEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-C-EEEEe-CCcHhhcCcC
Confidence 47788888888766655544 55565543211 1111100000001123468888888876 4 44455 4579999988
Q ss_pred CCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCC----CCce---EEEeeccccc
Q 043890 311 QSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMD----SGPV---ATFQVHEYLR 383 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~----~~~~---~~~~~~~~~~ 383 (509)
+++. ..+........ + ....|.++...++|.+.+....+-+.++|..+. .... ..+....+.
T Consensus 401 ~~~~-----~~~~~~~~~~~---~--~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 469 (758)
T 3ott_A 401 TRQF-----IHYNIVDNTGT---Y--NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL- 469 (758)
T ss_dssp TTEE-----EEEEEECCC-----C--BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC-
T ss_pred CCcE-----EEeecCCCcCC---C--CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc-
Confidence 7753 22221110000 0 114588888888777666443466888886520 0111 111111110
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
.. ..|.++...++|++-+.++..+-|..+|..+++..
T Consensus 470 -------~~---~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 470 -------SG---MFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp -------SC---SCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred -------cc---ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 00 11347888888887764344456888898876544
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=82.80 E-value=43 Score=33.86 Aligned_cols=165 Identities=11% Similarity=-0.007 Sum_probs=85.9
Q ss_pred cCeEEEEECCCCCEEEEEcCCeEEEEEccCC-----Ccee--eEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCe
Q 043890 231 YHINSISNNSDGETFISADDLRINLWNLEIS-----NQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 303 (509)
Q Consensus 231 ~~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~-----~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~ 303 (509)
..|.++...+++++.+....+-|.++|.++. .... ...... ..+ ....|.++...+++ ++-+.++..+-
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~l--~~~~i~~i~~d~~g-~lWi~~~t~~G 494 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH-NGL--SGMFINQIIPDNEG-NVWVLLYNNKG 494 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGG-GTC--SCSCEEEEEECTTS-CEEEEETTCSS
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccc-ccc--ccceeeeEEEcCCC-CEEEEccCCCC
Confidence 3477888777776655445556778886531 1110 000000 011 23458899988887 65553333455
Q ss_pred EEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccc
Q 043890 304 IRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLR 383 (509)
Q Consensus 304 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 383 (509)
|..+|..+++. ..+..... . ....+.++....+|.+-+... +-+..||..+ .. ...+.. .+..
T Consensus 495 l~~~d~~~~~~-----~~~~~~~~-------~-~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~-~~-~~~~~~-~gl~ 557 (758)
T 3ott_A 495 IDKINPRTREV-----TKLFADEL-------T-GEKSPNYLLCDEDGLLWVGFH-GGVMRINPKD-ES-QQSISF-GSFS 557 (758)
T ss_dssp EEEEETTTTEE-----EEECTTTS-------C-GGGCEEEEEECTTSCEEEEET-TEEEEECC---CC-CCBCCC-CC--
T ss_pred cEEEeCCCCce-----EEecCCCc-------C-CCcccceEEECCCCCEEEEec-CceEEEecCC-Cc-eEEecc-cCCC
Confidence 88899887652 33221110 0 013578888888888776654 4588888764 22 222211 1100
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 384 PKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 384 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
.+. |.++... +|.+. .++.+| |..|+..+.+..
T Consensus 558 --------~~~---i~~i~~~-~g~lW-i~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 558 --------NNE---ILSMTCV-KNSIW-VSTTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp ---------CC---EEEEEEE-TTEEE-EEESSC-EEEEETTTCCEE
T ss_pred --------ccc---eEEEEEC-CCCEE-EECCCC-eEEEcCCCceeE
Confidence 011 2255543 55544 455554 777888766543
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.39 E-value=33 Score=32.25 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=62.1
Q ss_pred cCeEEEEECCCCC--EEEEEcCCeEEEEEccCCCceeeEeeccCCccC----CCccceEEEEEeCC----CCcEEEEEEc
Q 043890 231 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS 300 (509)
Q Consensus 231 ~~v~~i~~~~~~~--~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~~~~~----~~~~l~~~~~ 300 (509)
...+.|+|.|+|. +|++-..|.|++++.........+..+...... ........|+++|+ + .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 3467899999985 666558899999975432111111111111111 12457789999996 3 44444332
Q ss_pred C------------CeEEEEECCCCc--ccC--CceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecC
Q 043890 301 K------------GSIRLIDLRQSA--LCD--SHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDY 358 (509)
Q Consensus 301 d------------g~i~vwd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 358 (509)
+ ..|.-|.+.... ... +....+.... ....| .-..|+|.|||.+.++.+|
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~------~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE------LHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE------SSSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC------CCCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 145556665321 110 1111122110 01234 3578999999998877544
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.93 E-value=28 Score=32.74 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCeEEEEECC
Q 043890 281 VITSAEFHPTHCNMLAYSSSKGSIRLIDLR 310 (509)
Q Consensus 281 ~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~ 310 (509)
....|+|.|++...|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456899999983246666789999999754
No 347
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.56 E-value=28 Score=31.61 Aligned_cols=114 Identities=9% Similarity=0.118 Sum_probs=63.2
Q ss_pred CeEEEEECCCCC--CceEEEeecccccccccccccCCCccceeeEEEc---CC----CCEEEEee-CCCcEEEEeCCCCc
Q 043890 359 MTLKLWDINMDS--GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS---GD----GLRVATGS-YSNLFRVFGCAPGS 428 (509)
Q Consensus 359 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~----~~~l~~~~-~dg~i~iw~~~~~~ 428 (509)
-+|.+||+.+ . +.++.+......... .+. +.++.+. |+ +.++..+. ..+.|.++|+.+++
T Consensus 123 pkLv~~DL~t-~~~~li~~y~~p~~~~~~-------~S~--l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~ 192 (381)
T 3q6k_A 123 PAIVAYDLKQ-PNYPEVVRYYFPTRLVEK-------PTY--FGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD 192 (381)
T ss_dssp CEEEEEESSS-TTCCEEEEEECCGGGCCC-------GGG--EEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE
T ss_pred ceEEEEECCC-CCceeEEEEECCHHhccc-------CCc--cceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc
Confidence 4677888887 5 677776654332211 000 1155555 22 33444343 46789999999988
Q ss_pred eeeeeeccCCCceeEEEEcCCCCCCcccceeeEeecCCCCCcccCCCcccccccceEEEEEcCC----CcEEEEEecCce
Q 043890 429 TEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGSDVPGVDTNGNSFDFTTKLLHLAWHPT----ENSIACAAANSL 504 (509)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~----~~~la~~~~~~i 504 (509)
.-+ .+..+ +.|+ ... ...+.|..+.....|..|+.+|+ ++.|....-.+-
T Consensus 193 swR-v~~~~--------~~pd-~~~----------------~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~ 246 (381)
T 3q6k_A 193 SWN-VTHPT--------FKAE-RPT----------------KFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI 246 (381)
T ss_dssp EEE-EECGG--------GSCC-SCE----------------EEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred EEE-EccCC--------Cccc-cCc----------------ceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence 776 54322 2222 110 01122333333567899999998 778877766555
Q ss_pred EEEe
Q 043890 505 YMYY 508 (509)
Q Consensus 505 ~v~~ 508 (509)
.+|.
T Consensus 247 ~ly~ 250 (381)
T 3q6k_A 247 KVYS 250 (381)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=75.95 E-value=46 Score=32.04 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=52.1
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEEccCCCceee--Eeecc---CCccCCCccceEEEEEeCCCCcEEEEEEcCCeEE
Q 043890 233 INSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 305 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~--~dg~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~ 305 (509)
...+.++|||++++++ -+.++.++|++.....+. +...+ ..... ........+|.++| +...+-.-|..|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceEE
Confidence 4568899999998877 699999999985221110 00000 00111 23455788999998 6666677899999
Q ss_pred EEECCCC
Q 043890 306 LIDLRQS 312 (509)
Q Consensus 306 vwd~~~~ 312 (509)
-|++...
T Consensus 403 kWni~~a 409 (638)
T 3sbq_A 403 KWNMEEA 409 (638)
T ss_dssp EEEHHHH
T ss_pred EEeccHH
Confidence 9999753
No 349
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=75.41 E-value=9.3 Score=24.14 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=21.2
Q ss_pred cCcceecccceEEEEECCCCCeEEe
Q 043890 33 AGEEVQEVDIISAIEFDKTGDHLAT 57 (509)
Q Consensus 33 ~~~~~~h~~~I~~v~~s~~~~~la~ 57 (509)
....+.|.+.++.+.....|+++++
T Consensus 42 ~ev~I~H~G~~Y~LR~Tr~GKLILT 66 (67)
T 2jra_A 42 REIVIAHGDDRYRLRLTSQNKLILT 66 (67)
T ss_dssp SEEEEEETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEeCCeEEEeEEccCCceeec
Confidence 3445789999999999999999876
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.42 E-value=49 Score=28.50 Aligned_cols=148 Identities=9% Similarity=-0.012 Sum_probs=77.1
Q ss_pred CeEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCC
Q 043890 232 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQ 311 (509)
Q Consensus 232 ~v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~ 311 (509)
.|..++...... ++.. +|.|+.|-.....++-. .......|..++..... .++. . ||.|..|-...
T Consensus 103 ~v~~ia~G~~hs-~al~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGAWAS-YALK-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALAV-K-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEETTEE-EEEE-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CeEEEECcCCEE-EEEe-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEEE-E-CCEEEEecCCC
Confidence 355666544433 3333 88888887665443210 11123457777776553 3333 3 79999998765
Q ss_pred CcccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCCCCceEEEeeccccccccccccc
Q 043890 312 SALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYE 391 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
...+..+.. ....|..++...+..+ +. .++.|+.|-.....++-.....
T Consensus 169 ~gqlg~p~~----------------~~~~v~~i~~G~~hs~-al-~~G~v~~wG~n~~gqlg~p~~~------------- 217 (282)
T 3qhy_B 169 FGQTTVPAE----------------AQSGVDDVAGGIFHSL-AL-KDGKVIAWGDNRYKQTTVPTEA------------- 217 (282)
T ss_dssp TSTTSCCGG----------------GGSSEEEEEECSSEEE-EE-ETTEEEEEECCTTSTTCCCGGG-------------
T ss_pred CCCCCCcee----------------cCCCeEEEEecCCEEE-EE-ECCeEEEEECCCCCCCCCCccc-------------
Confidence 432110000 0135777776544333 33 6799999977653333110000
Q ss_pred CCCccceeeEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 043890 392 NDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTE 430 (509)
Q Consensus 392 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 430 (509)
...|..++-.......+ . ||.|+.|-.+...++
T Consensus 218 ---~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 218 ---LSGVSAIASGEWYSLAL--K-NGKVIAWGSSRTAPS 250 (282)
T ss_dssp ---GSSCCEEEECSSCEEEE--E-TTEEEEESTTCCCCG
T ss_pred ---CCCceEEEcCCCEEEEE--E-CCEEEEecCCCCccc
Confidence 01122555544433333 3 999999987654333
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.00 E-value=36 Score=35.56 Aligned_cols=34 Identities=6% Similarity=-0.070 Sum_probs=30.0
Q ss_pred eeeEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 398 KFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 398 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+.+++..++..++++-+.|+++++|++.+++++.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 3467777888999999999999999999998877
No 352
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=68.31 E-value=27 Score=31.14 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=63.9
Q ss_pred cEEEEEEcCCeEEEEECCCCcccCCceeeeccccCCCCccccccccccEEEEE---EecCCCEEEEe--cCCeEEEEECC
Q 043890 293 NMLAYSSSKGSIRLIDLRQSALCDSHAILFEEQEAPGSRSFFTEIIASISDIK---FAKDGRHILSR--DYMTLKLWDIN 367 (509)
Q Consensus 293 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~s~--~~~~i~iwd~~ 367 (509)
.+++.++.||.|.-+|..+++..++ ++.... .++.... ...++..++.. .+|.|..+|..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~----~~~~~~-----------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS----IEPENF-----------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE----ECGGGS-----------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE----ecCCcc-----------CCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 5788999999999999999986432 221100 0010000 00133344442 46999999987
Q ss_pred CCCCceEEEeecccccccccccccCCCccceeeEEEc-----------CCCCEEEEeeCCCcEEEEeCCCCceeeeeecc
Q 043890 368 MDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLS-----------GDGLRVATGSYSNLFRVFGCAPGSTEATTLEA 436 (509)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 436 (509)
+ +.....+.... .+. . . -+... ..+..+++|+.+|.++-.|+.+|+.+- .+..
T Consensus 76 ~-G~~~~~~~~~~-lv~-~------S------P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W-~~~~ 139 (339)
T 2be1_A 76 Q-GLQKLPLSIRQ-LVS-T------S------PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS-AFGP 139 (339)
T ss_dssp T-EEEEEEEEHHH-HHT-T------C------SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE-EEST
T ss_pred C-CcEEeeecccc-cee-c------c------ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE-EEec
Confidence 5 32222222111 100 0 0 01111 145678889999999999999999887 6553
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.82 E-value=1.4e+02 Score=31.19 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=29.1
Q ss_pred cceEEEEEeCCCCcEEEEEEcCCeEEEEECCCCcc
Q 043890 280 EVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSAL 314 (509)
Q Consensus 280 ~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 314 (509)
..+.+++..++. .++++-+.|+++|+|++.+++.
T Consensus 236 ~~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 236 NTIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TCEEEEEEETTT-TEEEEEETTCEEEEEETTTTEE
T ss_pred ceEEEEeecCCC-cEEEEEECCCEEEEEECCCCCe
Confidence 356777888876 8999999999999999999875
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.87 E-value=29 Score=37.25 Aligned_cols=32 Identities=6% Similarity=-0.063 Sum_probs=28.9
Q ss_pred eEEEcCCCCEEEEeeCCCcEEEEeCCCCceee
Q 043890 400 ECCLSGDGLRVATGSYSNLFRVFGCAPGSTEA 431 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 431 (509)
+++..++..+|++-+.|++++||++.+++++.
T Consensus 242 s~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 242 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CCEEETTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred EeeccCCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 66677888999999999999999999998877
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=57.20 E-value=42 Score=32.67 Aligned_cols=52 Identities=10% Similarity=-0.016 Sum_probs=31.2
Q ss_pred eEEEcCCCCEEEEeeCC------------CcEEEEeCCCCceeeeeeccCC-CceeEEEEcCCCCC
Q 043890 400 ECCLSGDGLRVATGSYS------------NLFRVFGCAPGSTEATTLEASK-NPMRRQVQTPSRPS 452 (509)
Q Consensus 400 ~~~~s~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~ 452 (509)
.++|+|+|++++.-..+ +.+.+.+..+++... .+.++. ..++.++|+|+++.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r-f~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE-EEECCTTCEEEEEEECTTSSE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEE-EEeCCCCccCcCeeECCCCCE
Confidence 68999999976654322 235555666666554 444443 45566677776543
No 356
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=57.18 E-value=1e+02 Score=27.26 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=9.7
Q ss_pred CeEEEEECCCCc
Q 043890 302 GSIRLIDLRQSA 313 (509)
Q Consensus 302 g~i~vwd~~~~~ 313 (509)
..+.+||+.+.+
T Consensus 168 ~~v~~yd~~~~~ 179 (357)
T 2uvk_A 168 KFLLSFDPSTQQ 179 (357)
T ss_dssp CEEEEEETTTTE
T ss_pred ccEEEEeCCCCc
Confidence 578999998865
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=53.80 E-value=1.3e+02 Score=27.30 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=81.3
Q ss_pred eEEEEEccCCC-ceeeEeeccCCccCCCccceEEEEEe---CC---CCcEEEEEE-cCCeEEEEECCCCcccCCceeeec
Q 043890 252 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNMLAYSS-SKGSIRLIDLRQSALCDSHAILFE 323 (509)
Q Consensus 252 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~---~~---~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~ 323 (509)
.|.+||+.+.. ++.+.+.++..... ....+..+++. |. +..++..+. ..+-|.|+|+.+++.. +...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 46677777751 33444434322222 34678888888 22 113444444 4678999999998742 2221
Q ss_pred cccCCCCcc--ccccc----cccEEEEEEecC----CCEEEEecCCeEEEEECCC-----C--CCceEEEeecccccccc
Q 043890 324 EQEAPGSRS--FFTEI----IASISDIKFAKD----GRHILSRDYMTLKLWDINM-----D--SGPVATFQVHEYLRPKL 386 (509)
Q Consensus 324 ~~~~~~~~~--~~~~~----~~~i~~~~~s~~----~~~l~s~~~~~i~iwd~~~-----~--~~~~~~~~~~~~~~~~~ 386 (509)
....+.... ...+. ...+..++++|+ ++.|....-..-++|.+.+ . ...++.+- ..+...
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G-~kg~~s-- 275 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLG-NRGKYN-- 275 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEE-ECCTTC--
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEee-ecCCCC--
Confidence 111111000 11111 247899999998 7777765322334444432 1 11111111 111000
Q ss_pred cccccCCCccceeeEEEc-CCCCEEEEeeCCCcEEEEeCCC
Q 043890 387 CDLYENDSIFDKFECCLS-GDGLRVATGSYSNLFRVFGCAP 426 (509)
Q Consensus 387 ~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~ 426 (509)
+ -...++. .+|.++++--+.+.|..|+..+
T Consensus 276 ------~----~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 276 ------D----AIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ------C----EEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred ------C----cceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 0 0135565 5777777777888999999874
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.73 E-value=68 Score=31.95 Aligned_cols=31 Identities=0% Similarity=-0.129 Sum_probs=26.1
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCceeeeeec
Q 043890 404 SGDGLRVATGSYSNLFRVFGCAPGSTEATTLE 435 (509)
Q Consensus 404 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 435 (509)
..+..+|++-+.|.++++|++++++++. +..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~-t~D 258 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQ-DYD 258 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEE-EEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEE-eec
Confidence 3457899999999999999999998876 443
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.62 E-value=99 Score=29.87 Aligned_cols=54 Identities=9% Similarity=-0.038 Sum_probs=31.6
Q ss_pred eeeEEEcCCCCEEEEeeC------------CCcEEEEeCCCCceeeeeeccC-CCceeEEEEcCCCCC
Q 043890 398 KFECCLSGDGLRVATGSY------------SNLFRVFGCAPGSTEATTLEAS-KNPMRRQVQTPSRPS 452 (509)
Q Consensus 398 v~~~~~s~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 452 (509)
--.+.|+++|.+.+.... .+.++.++..+|+... .+.+. ....+.++||||++.
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-fl~~P~~aEpnGiafSPD~kt 544 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-EEECCTTCEEEEEEECTTSSE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE-EEeCCCCccccCCEECCCCCE
Confidence 347899999987763321 1256666666666544 44332 234566667666654
No 360
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=46.04 E-value=1.5e+02 Score=25.71 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=16.6
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCcee
Q 043890 406 DGLRVATGSYS-----NLFRVFGCAPGSTE 430 (509)
Q Consensus 406 ~~~~l~~~~~d-----g~i~iw~~~~~~~~ 430 (509)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 66777777653 35778888776543
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.80 E-value=1e+02 Score=30.01 Aligned_cols=18 Identities=6% Similarity=0.290 Sum_probs=14.9
Q ss_pred ccceeeEEEEcCCCceEEEe
Q 043890 118 EKINKIRWCQTANGALFLLS 137 (509)
Q Consensus 118 ~~v~~l~~~~~~~~~~l~s~ 137 (509)
..++.++| +||++.|++.
T Consensus 531 aE~TG~~f--spDg~tlfvn 548 (592)
T 3zwu_A 531 CEVTGISF--SPDQKTLFVG 548 (592)
T ss_dssp CEEEEEEE--CTTSSEEEEE
T ss_pred ccCcCeeE--CCCCCEEEEE
Confidence 56999999 9999877664
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.40 E-value=1.7e+02 Score=28.25 Aligned_cols=61 Identities=16% Similarity=0.000 Sum_probs=36.9
Q ss_pred ccEEEEEEecCCCEEEEecC-------------CeEEEEECCCCCCceEEEeecccccccccccccCCCccceeeEEEcC
Q 043890 339 ASISDIKFAKDGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSG 405 (509)
Q Consensus 339 ~~i~~~~~s~~~~~l~s~~~-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 405 (509)
.....|.|+++|.+.++.+. ..+..++..+ ++....+...... .++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 46788999999998774321 1455555543 3433333222111 012899999
Q ss_pred CCCEEEEee
Q 043890 406 DGLRVATGS 414 (509)
Q Consensus 406 ~~~~l~~~~ 414 (509)
|++.|+++-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999988664
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.68 E-value=34 Score=33.98 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=28.7
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhc
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIAD 158 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 158 (509)
.|.++.+ +..++++-+.|.++|+|++.++++.....
T Consensus 223 ~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4666655 46799999999999999999998665544
No 364
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=29.76 E-value=2.6e+02 Score=23.82 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=56.7
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEEccCCCceeeEeeccCCccCCCccceEEEEEeCCCCcEEEEEEcCCeEEEEECCCC
Q 043890 233 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 312 (509)
Q Consensus 233 v~~i~~~~~~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~~~~dg~i~vwd~~~~ 312 (509)
|..++.......++ +||.|+.|-.....++-. |... ...|..++..... .++. . +|.|..|-....
T Consensus 65 i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~-----P~~~---~~~v~~ia~G~~h--s~al-~-~G~v~~wG~n~~ 130 (282)
T 3qhy_B 65 VDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTV-----PAEA---RSGVDAIAAGAWA--SYAL-K-DGKVIAWGDDSD 130 (282)
T ss_dssp CCEEEECSSEEEEE--ETTEEEEEECCTTSTTCC-----CGGG---SSSEEEEEEETTE--EEEE-E-TTEEEEEECCTT
T ss_pred EEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCC-----Cccc---CCCeEEEECcCCE--EEEE-e-CCeEEEecCCCC
Confidence 55555543322222 478888887665443211 1111 3468888887663 3333 3 999999987653
Q ss_pred cccCCceeeeccccCCCCccccccccccEEEEEEecCCCEEEEecCCeEEEEECCCC
Q 043890 313 ALCDSHAILFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMD 369 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~ 369 (509)
..+-.+. . ....|..++...+..++++ ++.|+.|-....
T Consensus 131 gqlg~~~-----~-----------~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~ 169 (282)
T 3qhy_B 131 GQTTVPA-----E-----------AQSGVTALDGGVYTALAVK--NGGVIAWGDNYF 169 (282)
T ss_dssp STTSCCG-----G-----------GGSSEEEEEECSSEEEEEE--TTEEEEEECCTT
T ss_pred CcCCCCc-----c-----------CCCCeEEEEcccCEEEEEE--CCEEEEecCCCC
Confidence 3211000 0 0135777766543333333 699999977653
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.45 E-value=37 Score=36.38 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=29.9
Q ss_pred cceeeEEEEcCCCceEEEeeCCCeEEEEeccchhhhhhhc
Q 043890 119 KINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIAD 158 (509)
Q Consensus 119 ~v~~l~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 158 (509)
.+.++.. .++..++++-+.|+++|||++.++.+.....
T Consensus 239 ~~vs~~~--~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEE--ETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeec--cCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3455555 6778899999999999999999998766543
Done!