Query 043891
Match_columns 200
No_of_seqs 104 out of 422
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q1s_A Large T antigen; import 13.8 72 0.0024 17.4 1.1 19 10-28 3-21 (26)
2 1v54_J Cytochrome C oxidase po 9.3 3.4E+02 0.012 17.3 3.5 27 77-103 27-53 (59)
3 2y69_J Cytochrome C oxidase po 6.1 5.5E+02 0.019 17.4 3.5 27 77-103 48-74 (80)
4 3qoe_A Heterocyst differentiat 5.8 1.4E+02 0.005 24.8 0.4 13 122-134 18-30 (302)
5 1jb0_X Photosystem I subunit P 5.4 3.8E+02 0.013 15.4 1.9 15 83-97 17-31 (35)
6 2knc_B Integrin beta-3; transm 4.8 6E+02 0.02 17.0 3.0 26 171-196 11-36 (79)
7 2lg4_A Aurelin; antimicrobial 6.4 1.7E+02 0.0058 17.5 0.0 14 155-169 9-22 (40)
8 1emz_A Envelope glycoprotein E 4.1 2.1E+02 0.0073 15.5 0.2 15 140-158 9-23 (26)
9 3ns4_A Vacuolar protein sortin 3.8 6.3E+02 0.021 21.2 3.0 22 162-183 24-45 (271)
10 2l2t_A Receptor tyrosine-prote 3.8 7.9E+02 0.027 14.7 4.2 27 171-197 10-36 (44)
No 1
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=13.85 E-value=72 Score=17.40 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=8.4
Q ss_pred ccCCCCccCCCCCCCCccc
Q 043891 10 SLDNPASQLKNETSRPSRV 28 (200)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (200)
|+|.....-+..+||.+.|
T Consensus 3 sdde~~ads~~sTPPKkKr 21 (26)
T 1q1s_A 3 SDDEAAADAQHAAPPKKKR 21 (26)
T ss_pred ccccccccccccCCCcccc
Confidence 4443333344455555444
No 2
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=9.33 E-value=3.4e+02 Score=17.31 Aligned_cols=27 Identities=19% Similarity=-0.004 Sum_probs=21.6
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhH
Q 043891 77 TYFPAFIYLFVALLVACLYSFITALTS 103 (200)
Q Consensus 77 ~~~~af~ylv~an~I~~~Ysllql~~~ 103 (200)
+|.--|++..+..+++.+|++..+...
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999998888753
No 3
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.13 E-value=5.5e+02 Score=17.44 Aligned_cols=27 Identities=19% Similarity=-0.004 Sum_probs=21.8
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhH
Q 043891 77 TYFPAFIYLFVALLVACLYSFITALTS 103 (200)
Q Consensus 77 ~~~~af~ylv~an~I~~~Ysllql~~~ 103 (200)
+|.--|.+.++..+++.+|++-.+...
T Consensus 48 sd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 48 TDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667889999999999998887753
No 4
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=5.80 E-value=1.4e+02 Score=24.81 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 043891 122 FLDTLMLGVVASA 134 (200)
Q Consensus 122 ~~Dqv~ayLL~Sa 134 (200)
.+||+|.||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999886
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.37 E-value=3.8e+02 Score=15.43 Aligned_cols=15 Identities=20% Similarity=0.478 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 043891 83 IYLFVALLVACLYSF 97 (200)
Q Consensus 83 ~ylv~an~I~~~Ysl 97 (200)
..++++|-++++|=+
T Consensus 17 lllLaINflVAayYF 31 (35)
T 1jb0_X 17 VLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357889999888743
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.79 E-value=6e+02 Score=16.96 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043891 171 TAIALSIFAVTDLVTLTMHSTYSLYK 196 (200)
Q Consensus 171 ~Si~lsflA~~~l~~~s~iSa~~L~~ 196 (200)
.++++..++.++++.+.++=.|++..
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666543
No 7
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=6.40 E-value=1.7e+02 Score=17.52 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=11.3
Q ss_pred ccccccchhhhhhhH
Q 043891 155 NKQANAGYDKFIKHT 169 (200)
Q Consensus 155 ~~vC~~~~~~FC~~~ 169 (200)
+.+|.+ |+.||+..
T Consensus 9 ~h~C~~-f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICES-FKSFCKDS 22 (40)
Confidence 456998 99999876
No 8
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.10 E-value=2.1e+02 Score=15.50 Aligned_cols=15 Identities=40% Similarity=0.959 Sum_probs=8.2
Q ss_pred HHHHHHhhCCccccccccc
Q 043891 140 AVAYIGLKGNSHAGWNKQA 158 (200)
Q Consensus 140 ~v~~l~~~G~~~~~W~~vC 158 (200)
+++|.+..|| |-|++
T Consensus 9 glayfsm~gn----WaKVl 23 (26)
T 1emz_A 9 GIAYFSMVGN----WAKXX 23 (26)
T ss_dssp HHHHHHHHHH----HHC--
T ss_pred HHHHHHHhhH----Hhhhc
Confidence 4666666664 66665
No 9
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=3.83 E-value=6.3e+02 Score=21.18 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=19.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 043891 162 YDKFIKHTATAIALSIFAVTDL 183 (200)
Q Consensus 162 ~~~FC~~~~~Si~lsflA~~~l 183 (200)
+..||+++.-+++-.|+..+..
T Consensus 24 ~rnFcDK~ve~~~~~Fi~~Ii~ 45 (271)
T 3ns4_A 24 KWNFLDKVIDIMTTNFVSNTIR 45 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998843
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=3.80 E-value=7.9e+02 Score=14.68 Aligned_cols=27 Identities=7% Similarity=-0.014 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043891 171 TAIALSIFAVTDLVTLTMHSTYSLYKG 197 (200)
Q Consensus 171 ~Si~lsflA~~~l~~~s~iSa~~L~~~ 197 (200)
.+++..-++-++.+....+..+-+.||
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 345555665444444444444444443
Done!