Query 043891
Match_columns 200
No_of_seqs 104 out of 422
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 16:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043891.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043891hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rrza_ a.7.10.1 (A:) Glycogen 7.5 49 0.0036 20.2 0.3 22 148-172 38-59 (66)
2 d1jb0x_ f.23.20.1 (X:) Subunit 5.8 1.7E+02 0.012 14.6 1.9 14 84-97 12-25 (29)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 4.2 4.2E+02 0.03 21.0 4.5 41 7-47 283-323 (472)
4 d1oede_ f.36.1.1 (E:) Acetylch 3.3 5.1E+02 0.037 18.2 3.9 15 152-167 220-234 (260)
5 d1ppje2 f.23.12.1 (E:1-69) Iro 3.0 5.3E+02 0.039 15.4 3.0 18 124-141 32-49 (69)
6 d1z8ga2 d.170.1.2 (A:50-159) H 2.2 2.2E+02 0.016 17.9 0.4 10 153-162 23-32 (110)
7 d1o9ga_ c.66.1.29 (A:) rRNA me 2.2 3.2E+02 0.023 20.3 1.4 27 152-179 46-72 (249)
8 d1bdga2 c.55.1.3 (A:223-460) H 2.1 4.2E+02 0.031 19.2 2.0 42 34-83 159-200 (237)
9 d1by2a_ d.170.1.1 (A:) M2BP {H 2.1 2.3E+02 0.017 17.9 0.3 8 153-160 27-34 (116)
10 d3beca2 e.3.1.1 (A:4-262) Peni 2.0 6.2E+02 0.045 18.2 3.0 22 122-143 96-117 (259)
No 1
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=7.50 E-value=49 Score=20.21 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCcccccccccccchhhhhhhHHHH
Q 043891 148 GNSHAGWNKQANAGYDKFIKHTATA 172 (200)
Q Consensus 148 G~~~~~W~~vC~~~~~~FC~~~~~S 172 (200)
++.+-.| .|.. |.-||.++.-+
T Consensus 38 dee~r~W--Fc~R-y~~Yc~q~~qa 59 (66)
T d1rrza_ 38 DEEHRTW--FCAR-YAWYCQQMMQA 59 (66)
T ss_dssp CHHHHHH--HHHH-HHHHHHHHHHH
T ss_pred cHHHHHH--HHHH-HHHHHHHHHHH
Confidence 3344457 4888 99999987643
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=5.78 E-value=1.7e+02 Score=14.60 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 043891 84 YLFVALLVACLYSF 97 (200)
Q Consensus 84 ylv~an~I~~~Ysl 97 (200)
-+++.|.+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888888754
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.15 E-value=4.2e+02 Score=20.95 Aligned_cols=41 Identities=7% Similarity=0.027 Sum_probs=23.5
Q ss_pred hhcccCCCCccCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 043891 7 VTASLDNPASQLKNETSRPSRVIYFRIDVALRILLFVFSFV 47 (200)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LR~~a~~~sl~ 47 (200)
.+=..|.+|.+-=.+.|++++..+.--.+..|+........
T Consensus 283 iaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~ 323 (472)
T d1wpga4 283 TALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVG 323 (472)
T ss_dssp HHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHH
T ss_pred HHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHH
Confidence 34456888888666666666544444455566555444443
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.27 E-value=5.1e+02 Score=18.15 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=7.1
Q ss_pred cccccccccchhhhhh
Q 043891 152 AGWNKQANAGYDKFIK 167 (200)
Q Consensus 152 ~~W~~vC~~~~~~FC~ 167 (200)
..|..+-.. .||+|-
T Consensus 220 ~eW~~vA~v-iDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKV-IDKACF 234 (260)
T ss_dssp ------CCH-HHHHHH
T ss_pred HHHHHHHHH-HHHHHH
Confidence 358888887 899874
No 5
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.95 E-value=5.3e+02 Score=15.36 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043891 124 DTLMLGVVASAIGAALAV 141 (200)
Q Consensus 124 Dqv~ayLL~SaasAA~~v 141 (200)
.+.+.||+..+.+.+.+-
T Consensus 32 Rk~fsYl~~g~~~v~~ay 49 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVAY 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHHHH
Confidence 367899887776665543
No 6
>d1z8ga2 d.170.1.2 (A:50-159) Hepsin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.20 E-value=2.2e+02 Score=17.89 Aligned_cols=10 Identities=10% Similarity=0.312 Sum_probs=7.6
Q ss_pred ccccccccch
Q 043891 153 GWNKQANAGY 162 (200)
Q Consensus 153 ~W~~vC~~~~ 162 (200)
.|..+|+.++
T Consensus 23 ~W~~VC~d~W 32 (110)
T d1z8ga2 23 TWRLLCSSRS 32 (110)
T ss_dssp EEEEEBCCTT
T ss_pred eEEeEecCCC
Confidence 5999997633
No 7
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}
Probab=2.19 E-value=3.2e+02 Score=20.30 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=20.2
Q ss_pred cccccccccchhhhhhhHHHHHHHHHHH
Q 043891 152 AGWNKQANAGYDKFIKHTATAIALSIFA 179 (200)
Q Consensus 152 ~~W~~vC~~~~~~FC~~~~~Si~lsflA 179 (200)
..|..-+.. +|-||..++..|=.++++
T Consensus 46 ~~w~~~~~L-lDPmCGSGTilIEAAlia 72 (249)
T d1o9ga_ 46 LPGDGPVTL-WDPCCGSGYLLTVLGLLH 72 (249)
T ss_dssp SSCCSCEEE-EETTCTTSHHHHHHHHHT
T ss_pred hcCCCCCce-eccccCccHHHHHHHHHH
Confidence 457766777 888998888888776654
No 8
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=2.10 E-value=4.2e+02 Score=19.21 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceeecCCCCcceeeeeEecccCchH
Q 043891 34 DVALRILLFVFSFVAILLIVTSKQTNLFPVPGTTFSVKIPAKFTYFPAFI 83 (200)
Q Consensus 34 ~l~LR~~a~~~sl~A~~vM~t~~q~~~~~~~~~~~~~~~~a~f~~~~af~ 83 (200)
.+.=|-+.++++.++.++--++++...+.+.|+ -|.++|.|+
T Consensus 159 ~V~~RaA~L~Aa~iaai~~~~~~~~~~Vg~dGS--------~~~~~p~y~ 200 (237)
T d1bdga2 159 MVVKRAAYLAGAGIACILRRINRSEVTVGVDGS--------LYKFHPKFC 200 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEEEESH--------HHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEEEeCc--------hhhcChhHH
Confidence 345677888888888887777777666543322 256677774
No 9
>d1by2a_ d.170.1.1 (A:) M2BP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.06 E-value=2.3e+02 Score=17.89 Aligned_cols=8 Identities=13% Similarity=0.609 Sum_probs=6.6
Q ss_pred cccccccc
Q 043891 153 GWNKQANA 160 (200)
Q Consensus 153 ~W~~vC~~ 160 (200)
+|..+|+.
T Consensus 27 ~Wg~VC~~ 34 (116)
T d1by2a_ 27 QWGTVCDN 34 (116)
T ss_dssp EEEEEBCT
T ss_pred EEEeEECC
Confidence 59999976
No 10
>d3beca2 e.3.1.1 (A:4-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.02 E-value=6.2e+02 Score=18.20 Aligned_cols=22 Identities=18% Similarity=-0.035 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043891 122 FLDTLMLGVVASAIGAALAVAY 143 (200)
Q Consensus 122 ~~Dqv~ayLL~SaasAA~~v~~ 143 (200)
+-|.+-+.|+-|+.-||.+++.
T Consensus 96 v~dLl~a~ll~S~NdAA~aLA~ 117 (259)
T d3beca2 96 VSQLIRGINLQSGNDACVAMAD 117 (259)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH
T ss_pred hHHhhhhhhhhhcChHHHHHHH
Confidence 4577778888889999988884
Done!