BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043892
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAM|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DAN|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DBM|A Chain A, Crystal Structure Of Allene Oxide Synthase
Length = 473
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/463 (52%), Positives = 330/463 (71%), Gaps = 17/463 (3%)
Query: 20 GDYGLPFFGPIKDRLDYFYFQG-QDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVL 78
G YG+PFF PIKDRL+YFY G +D++F+ R+ K++ST+F+ NMPPGPF++SNP VI +L
Sbjct: 13 GSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLL 72
Query: 79 DAVSFPVLFDTSKVEK-----------LSFTGGHRVCAYLDPSEPKHSSLKSFILSTLAS 127
DA SFP+LFD SKVEK TGG+RV +YLDPSEP+H+ LK+ + L +
Sbjct: 73 DAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKN 132
Query: 128 KHDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIAS 187
++ IP F+T +ELF LE ++A+ G+A +N + + AF F R + + +P +TK+ +
Sbjct: 133 SSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPEETKLGT 192
Query: 188 KGPSFANKWLFPQLAPITTLRLPKFLNPLEDLLLHTFPLPFFVAKSDYQKLYDAFNKFSG 247
P+ + W+ LAP L LP FL ++ LLHTF LP F+ KS Y KLYD F +
Sbjct: 193 SAPTLISSWVLFNLAPTLDLGLPWFL---QEPLLHTFRLPAFLIKSTYNKLYDYFQSVAT 249
Query: 248 PILDEAERFGIQRDEACHNLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRT 307
P++++AE+ G+ +DEA HN++F N +GG+K FP +KW+GLAGE LH QLA+EIR
Sbjct: 250 PVMEQAEKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRG 309
Query: 308 VVKA--EGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKG 365
+K+ +G VT A+E+M LTKSVVYE+LRIEPPVP QYGKAK + I SHDA +E+KKG
Sbjct: 310 AIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKG 369
Query: 366 NMIFGYQPFATKDPRVFENPEEFVGHRFVGEGEKLLKYVYWSNGRETEDPTAENKQCPAK 425
M+FGYQPFATKDP+VF+ PEE+V RFVG+GE LLKYV+WSNG ETE PT ENKQC K
Sbjct: 370 EMLFGYQPFATKDPKVFDRPEEYVPDRFVGDGEALLKYVWWSNGPETESPTVENKQCAGK 429
Query: 426 NLVVLLSRVFLVEFFHRYDTFTVEAGKLLTGSSATIKSLTKAT 468
+ VVL++R+F++E F RYD+F +E G+ G++ T+ L +A+
Sbjct: 430 DFVVLITRLFVIELFRRYDSFEIELGESPLGAAVTLTFLKRAS 472
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/462 (50%), Positives = 319/462 (69%), Gaps = 16/462 (3%)
Query: 20 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLD 79
G+YGLP GPIKDR DYFY QG ++FF+ RI K+ ST+++ NMPPG FIA NP V+A+LD
Sbjct: 32 GNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLD 91
Query: 80 AVSFPVLFDTSKVEK-----------LSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASK 128
SFPVLFD KVEK TGG+R+ +YLDPSEPKH LK+ + L S
Sbjct: 92 GKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSS 151
Query: 129 HDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASK 188
++ P F+ SELF LE +++ KG+A++ +D AFNF R F +P DTK+ +
Sbjct: 152 RNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKLKAD 211
Query: 189 GPSFANKWLFPQLAPITTLRLPKFLNPLEDLLLHTFPLPFFVAKSDYQKLYDAFNKFSGP 248
P KW+ L P+ ++ LP+ + E+ L+HTF LP + KSDYQ+LY+ F + +G
Sbjct: 212 APGLITKWVLFNLHPLLSIGLPRVI---EEPLIHTFSLPPALVKSDYQRLYEFFLESAGE 268
Query: 249 ILDEAERFGIQRDEACHNLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTV 308
IL EA++ GI R+EA HNL+F + N +GG+K FP ++K +G AG ++H +LA+EIR+V
Sbjct: 269 ILVEADKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSV 328
Query: 309 VKAEGG-VTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNM 367
+K+ GG +T A+E+M LTKSVVYE LR EPPV QYG+AK D+VI SHDAA+++K G M
Sbjct: 329 IKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEM 388
Query: 368 IFGYQPFATKDPRVFENPEEFVGHRFVG-EGEKLLKYVYWSNGRETEDPTAENKQCPAKN 426
++GYQP AT+DP++F+ +EFV RFVG EGEKLL++V WSNG ETE PT NKQC K+
Sbjct: 389 LYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKD 448
Query: 427 LVVLLSRVFLVEFFHRYDTFTVEAGKLLTGSSATIKSLTKAT 468
VVL++R+F++E F RYD+F +E G GSS SL KA+
Sbjct: 449 FVVLVARLFVIEIFRRYDSFDIEVGTSPLGSSVNFSSLRKAS 490
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/462 (50%), Positives = 319/462 (69%), Gaps = 16/462 (3%)
Query: 20 GDYGLPFFGPIKDRLDYFYFQGQDKFFQDRINKHKSTIFKTNMPPGPFIASNPNVIAVLD 79
G+YGLP GPIKDR DYFY QG ++FF+ RI K+ ST+++ NMPPG FIA NP V+A+LD
Sbjct: 32 GNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLD 91
Query: 80 AVSFPVLFDTSKVEK-----------LSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASK 128
SFPVLFD KVEK TGG+R+ +YLDPSEPKH LK+ + L S
Sbjct: 92 GKSFPVLFDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSS 151
Query: 129 HDKFIPLFKTCVSELFIELEDQMAEKGEANYNTLNDTLAFNFFFRLFCDKSPNDTKIASK 188
++ P F+ SELF LE +++ KG+A++ +D AFNF R F +P DTK+ +
Sbjct: 152 RNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKLKAD 211
Query: 189 GPSFANKWLFPQLAPITTLRLPKFLNPLEDLLLHTFPLPFFVAKSDYQKLYDAFNKFSGP 248
P KW+ L P+ ++ LP+ + E+ L+HTF LP + KSDYQ+LY+ F + +G
Sbjct: 212 APGLITKWVLFNLHPLLSIGLPRVI---EEPLIHTFSLPPALVKSDYQRLYEFFLESAGE 268
Query: 249 ILDEAERFGIQRDEACHNLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTV 308
IL EA++ GI R+EA HNL+F + N +GG+K FP ++K +G AG ++H +LA+EIR+V
Sbjct: 269 ILVEADKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSV 328
Query: 309 VKAEGG-VTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNM 367
+K+ GG +T A+E+M LTKSVVYE LR EPPV QYG+AK D+VI SHDAA+++K G M
Sbjct: 329 IKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEM 388
Query: 368 IFGYQPFATKDPRVFENPEEFVGHRFVG-EGEKLLKYVYWSNGRETEDPTAENKQCPAKN 426
++GYQP AT+DP++F+ +EFV RFVG EGEKLL++V WSNG ETE PT NKQC K+
Sbjct: 389 LYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKD 448
Query: 427 LVVLLSRVFLVEFFHRYDTFTVEAGKLLTGSSATIKSLTKAT 468
VVL++R+F++E F RYD+F +E G GSS SL KA+
Sbjct: 449 FVVLVARLFVIEIFRRYDSFDIEVGTSPLGSSVNFSSLRKAS 490
>pdb|3SN5|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
Cholest-4-En-3-One
pdb|3SN5|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
Cholest-4-En-3-One
pdb|3V8D|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
7-Ketocholesterol
pdb|3V8D|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
7-Ketocholesterol
Length = 491
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 293 AGEKLHRQLADEIRTVVKAEGG---VTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKV 349
A E++ R L + + V EG ++ A L + + S++ E+LR+ AK
Sbjct: 294 ATEEVKRTLENAGQKV-SLEGNPICLSQAELNDLPVLDSIIKESLRLSS-ASLNIRTAKE 351
Query: 350 DMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRFVGEGEKLLKYVYWSNG 409
D +H D +Y I+K ++I Y DP ++ +P F R++ E K K ++ NG
Sbjct: 352 DFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGK-TKTTFYCNG 410
>pdb|3DAX|A Chain A, Crystal Structure Of Human Cyp7a1
pdb|3DAX|B Chain B, Crystal Structure Of Human Cyp7a1
Length = 491
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 293 AGEKLHRQLADEIRTVVKAEGG---VTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKV 349
A E++ R L + + V EG ++ A L + + S++ E+LR+ AK
Sbjct: 294 ATEEVKRTLENAGQKV-SLEGNPICLSQAELNDLPVLDSIIKESLRLSS-ASLNIRTAKE 351
Query: 350 DMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRFVGEGEKLLKYVYWSNG 409
D +H D +Y I+K ++I Y DP ++ +P F R++ E K K ++ NG
Sbjct: 352 DFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGK-TKTTFYCNG 410
>pdb|3NC3|A Chain A, Cyp134a1 Structure With A Closed Substrate Binding Loop
pdb|3NC3|B Chain B, Cyp134a1 Structure With A Closed Substrate Binding Loop
pdb|3NC5|A Chain A, Cyp134a1 Structure With An Open Substrate Binding Loop
pdb|3NC5|B Chain B, Cyp134a1 Structure With An Open Substrate Binding Loop
pdb|3NC6|A Chain A, Cyp134a1 1-Phenylimidazole Bound Structure
pdb|3NC6|B Chain B, Cyp134a1 1-Phenylimidazole Bound Structure
pdb|3NC7|A Chain A, Cyp134a1 2-Phenylimidazole Bound Structure
pdb|3NC7|B Chain B, Cyp134a1 2-Phenylimidazole Bound Structure
Length = 441
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 325 LTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFEN 384
L + E LR +PPV + D V+ EIKK ++F A +DP FE
Sbjct: 301 LVPRAIAETLRYKPPVQLIPRQLSQDTVV----GGMEIKKDTIVFCMIGAANRDPEAFEQ 356
Query: 385 PEEFVGHR 392
P+ F HR
Sbjct: 357 PDVFNIHR 364
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 303 DEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEI 362
DE+ + V+F AL ++ ++V+ E LR+ PP+ AK + + H I
Sbjct: 284 DELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGH----RI 339
Query: 363 KKGNMIFGYQPFATKDPRVFENPEEFVGHRFVG-EGEKLLKYVYW 406
+G+++ + + P F +P +FV R+ E LL W
Sbjct: 340 HEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTW 384
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 303 DEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEI 362
DE+ + V+F AL ++ ++V+ E LR+ PP+ AK + + H I
Sbjct: 284 DELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGH----RI 339
Query: 363 KKGNMIFGYQPFATKDPRVFENPEEFVGHRFVG-EGEKLLKYVYW 406
+G+++ + + P F +P +FV R+ E LL W
Sbjct: 340 HEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTW 384
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 303 DEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEI 362
DE+ + V+F AL ++ ++V+ E LR+ PP+ AK + + H I
Sbjct: 284 DELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGH----RI 339
Query: 363 KKGNMIFGYQPFATKDPRVFENPEEFVGHRFVG-EGEKLLKYVYW 406
+G+++ + + P F +P +FV R+ E LL W
Sbjct: 340 HEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTW 384
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 303 DEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEI 362
DE+ + V+F AL ++ ++V+ E LR+ PP+ AK + + H I
Sbjct: 284 DELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGH----RI 339
Query: 363 KKGNMIFGYQPFATKDPRVFENPEEFVGHRFVG-EGEKLLKYVYW 406
+G+++ + + P F +P +FV R+ E LL W
Sbjct: 340 HEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTW 384
>pdb|2Z3T|A Chain A, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|B Chain B, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|C Chain C, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|D Chain D, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3U|A Chain A, Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome
P450 Stap (Cyp245a1)
pdb|3A1L|A Chain A, Crystal Structure Of 11,11'-Dichlorochromopyrrolic Acid
Bound Cytochrome P450 Stap (Cyp245a1)
Length = 425
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 296 KLHRQLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHS 355
+ HR + DE+RT ++ T + V E +R +PPV A D+ +
Sbjct: 271 RAHRDVLDELRTTPES--------------TPAAVEELMRYDPPVQAVTRWAYEDIRLGD 316
Query: 356 HDAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHR 392
HD I +G+ + A +DP F +P+ HR
Sbjct: 317 HD----IPRGSRVVALLGSANRDPARFPDPDVLDVHR 349
>pdb|1CPT|A Chain A, Crystal Structure And Refinement Of Cytochrome P450-Terp
At 2.3 Angstroms Resolution
Length = 428
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 321 ERMVLTKS-------VVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQP 373
E++ L KS +V EA+R PV A D + + IK+G+ I P
Sbjct: 288 EQLALAKSDPALIPRLVDEAVRWTAPVKSFMRTALADTEVRGQN----IKRGDRIMLSYP 343
Query: 374 FATKDPRVFENPEEFVGHRF 393
A +D VF NP+EF RF
Sbjct: 344 SANRDEEVFSNPDEFDITRF 363
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 25/185 (13%)
Query: 276 YGGLKTGFPALIKWVGLAGEKLHRQLADEIR---TVVKAEGGVTFAALERMVLTKSVVYE 332
+ G +T AL + L G+ H + + +R ++ +T L++M V+ E
Sbjct: 253 FAGHETLTSALSSFCLLLGQ--HSDIRERVRQEQNKLQLSQELTAETLKKMPYLDQVLQE 310
Query: 333 ALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATK-DPRVFENPEEFVGH 391
LR+ PPV G +++ + KG ++ YQ T DP ++ +PE+F
Sbjct: 311 VLRLIPPV----GGGFRELIQDCQFQGFHFPKGWLV-SYQISQTHADPDLYPDPEKFDPE 365
Query: 392 RFVGEGEKL----LKYVYWSNGRETEDPTAENKQCPAKNLVVLLSRVFLVEFFHRYDTFT 447
RF +G +V + G ++C K L ++F ++D +T
Sbjct: 366 RFTPDGSATHNPPFAHVPFGGGL---------RECLGKEFARLEMKLFATRLIQQFD-WT 415
Query: 448 VEAGK 452
+ G+
Sbjct: 416 LLPGQ 420
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 11/149 (7%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
NL F T L+ GF L+K ++ ++ +EI V+ F +M
Sbjct: 275 NLFFAGTETVSTTLRYGFLLLMKH-----PEVEAKVHEEIDRVIGKNRQPKFEDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENP 385
T++V++E R +P +V+ D + + KG +F +DPR F NP
Sbjct: 330 TEAVIHEIQRFGDMLPMGLAH-RVNKDTKFRD--FFLPKGTEVFPMLGSVLRDPRFFSNP 386
Query: 386 EEFVGHRFV---GEGEKLLKYVYWSNGRE 411
+F F+ G+ +K +V +S G+
Sbjct: 387 RDFNPQHFLDKKGQFKKSDAFVPFSIGKR 415
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
+L F T L+ GF ++K+ +A E+++R EI V+ +M
Sbjct: 275 SLFFAGTETTSTTLRYGFLLMLKYPHVA-ERVYR----EIEQVIGPHRPPELHDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDA--AYEIKKGNMIFGYQPFATKDPRVFE 383
T++V+YE R +P V ++ H + Y I K +F A DP FE
Sbjct: 330 TEAVIYEIQRFSDLLPM-----GVPHIVTQHTSFRGYIIPKDTEVFLILSTALHDPHYFE 384
Query: 384 NPEEF 388
P+ F
Sbjct: 385 KPDAF 389
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 330 VYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENPEEFV 389
V E R P PF K D V ++ E KKG + DPR++++P+EF
Sbjct: 280 VQEVRRYYPFGPFLGALVKKDFVWNN----CEFKKGTSVLLDLYGTNHDPRLWDHPDEFR 335
Query: 390 GHRFVGEGEKLLKYVYWSNGRETEDPTAENKQCPAKNLVVLLSRVFLVEFFHRYD 444
RF E L + G + +CP + + + + + L H+ +
Sbjct: 336 PERFAEREENLFDMIPQGGGH-----AEKGHRCPGEGITIEVMKASLDFLVHQIE 385
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 315 VTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPF 374
VT+ R+ L + + E LR+ P VP S Y+I +G ++
Sbjct: 333 VTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTR---PSSIFGYDIPEGMVVIPNLQG 389
Query: 375 ATKDPRVFENPEEFVGHRFVGEG 397
A D V+E P EF RF+ G
Sbjct: 390 AHLDETVWEQPHEFRPDRFLEPG 412
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVG---LAGEKLHRQLADEIRTVVKAEGGVTFAALER 322
N + + + +G +++KW L ++ ++L +EI V T + R
Sbjct: 272 NHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNR 331
Query: 323 MVLTKSVVYEALRIEPPVPFQY-GKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRV 381
++L ++ + E LR+ P P KA VD I + + KG + + +
Sbjct: 332 LLLLEATIREVLRLRPVAPMLIPHKANVDSSI----GEFAVDKGTEVIINLWALHHNEKE 387
Query: 382 FENPEEFVGHRFV 394
+ P++F+ RF+
Sbjct: 388 WHQPDQFMPERFL 400
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
+L F T L+ GF ++K+ + ++ EI V+ + +M
Sbjct: 275 SLFFAGTETTSTTLRYGFLLMLKY-----PHVTERVQKEIEQVIGSHRPPALDDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENP 385
T +V++E R+ +PF + + Y I K +F A DPR FE P
Sbjct: 330 TDAVIHEIQRLGDLIPFGVPHT---VTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETP 386
Query: 386 EEF 388
F
Sbjct: 387 NTF 389
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
+L F T L+ GF ++K+ + ++ EI V+ + +M
Sbjct: 275 SLFFAGTETTSTTLRYGFLLMLKY-----PHVTERVQKEIEQVIGSHRPPALDDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENP 385
T +V++E R+ +PF + + Y I K +F A DPR FE P
Sbjct: 330 TDAVIHEIQRLGDLIPFGVPHT---VTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETP 386
Query: 386 EEF 388
F
Sbjct: 387 NTF 389
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
+L F T L+ GF ++K+ + ++ EI V+ + +M
Sbjct: 275 SLFFAGTETTSTTLRYGFLLMLKY-----PHVTERVQKEIEQVIGSHRPPALDDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENP 385
T +V++E R+ +PF + + Y I K +F A DPR FE P
Sbjct: 330 TDAVIHEIQRLGDLIPFGVPHT---VTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETP 386
Query: 386 EEF 388
F
Sbjct: 387 NTF 389
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
+L F T L+ GF ++K+ + ++ EI V+ + +M
Sbjct: 275 SLFFAGTETTSTTLRYGFLLMLKY-----PHVTERVQKEIEQVIGSHRPPALDDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENP 385
T +V++E R+ +PF + + Y I K +F A DPR FE P
Sbjct: 330 TDAVIHEIQRLGDLIPFGVPHT---VTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETP 386
Query: 386 EEF 388
F
Sbjct: 387 NTF 389
>pdb|3EJB|B Chain B, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|D Chain D, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|F Chain F, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|H Chain H, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|B Chain B, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|D Chain D, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|F Chain F, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|H Chain H, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|B Chain B, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|D Chain D, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|F Chain F, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|H Chain H, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 404
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 325 LTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFEN 384
L + V E LR E P A D+ I I++G ++ A +DP +F N
Sbjct: 266 LIGTAVEECLRYESPTQMTARVASEDIDI----CGVTIRQGEQVYLLLGAANRDPSIFTN 321
Query: 385 PEEF 388
P+ F
Sbjct: 322 PDVF 325
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
NL F T L+ GF L+K ++ ++ +EI V+ F +M
Sbjct: 275 NLFFAGTETVSTTLRYGFLLLMKH-----PEVEAKVHEEIDRVIGKNRQPKFEDRAKMPY 329
Query: 326 TKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENP 385
++V++E R +P + +V D + + KG ++ +DP F NP
Sbjct: 330 MEAVIHEIQRFGDVIPMGLAR-RVKKDTKFRD--FFLPKGTEVYPMLGSVLRDPSFFSNP 386
Query: 386 EEFVGHRFVGE 396
++F F+ E
Sbjct: 387 QDFNPQHFLNE 397
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 279 LKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEP 338
L+ GF ++K+ + ++ EI V+ + +M T +V++E R+
Sbjct: 288 LRYGFLLMLKY-----PHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGD 342
Query: 339 PVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENPEEF 388
+PF + + Y I K +F A DPR FE P F
Sbjct: 343 LIPFGVPHT---VTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTF 389
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 300 QLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKA-KVDMVIHSHDA 358
++ +EI V+ M T +VV+E R +P A D+ +
Sbjct: 305 KVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRN--- 361
Query: 359 AYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRFVGEGEKLLKYVYW 406
Y I KG I D + F NPE F H F+ EG K Y+
Sbjct: 362 -YLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYF 408
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 266 NLVFLSTLNAYGG--------LKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTF 317
NLV ++TLN + G L+ GF L+K ++ ++ +EI V+ F
Sbjct: 268 NLV-MTTLNLFIGGTETVSTTLRYGFLLLMKH-----PEVEAKVHEEIDRVIGKNRQPKF 321
Query: 318 AALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATK 377
+M ++V++E R +P + +V D + + KG ++ +
Sbjct: 322 EDRAKMPYMEAVIHEIQRFGDVIPMSLAR-RVKKDTKFRD--FFLPKGTEVYPMLGSVLR 378
Query: 378 DPRVFENPEEFVGHRFVGE 396
DP F NP++F F+ E
Sbjct: 379 DPSFFSNPQDFNPQHFLNE 397
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 300 QLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKA-KVDMVIHSHDA 358
++ +EI V+ M T +VV+E R +P A D+ +
Sbjct: 303 KVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRN--- 359
Query: 359 AYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRFVGEGEKLLKYVYW 406
Y I KG I D + F NPE F H F+ EG K Y+
Sbjct: 360 -YLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYF 406
>pdb|3B6H|A Chain A, Crystal Structure Of Human Prostacyclin Synthase In
Complex With Inhibitor Minoxidil
pdb|3B6H|B Chain B, Crystal Structure Of Human Prostacyclin Synthase In
Complex With Inhibitor Minoxidil
Length = 498
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 328 SVVYEALRIEPPVPFQYGKAKVDMVIHSHDA-AYEIKKGNMIFGYQPFAT--KDPRVFEN 384
SV+ E+LR+ PF + VD+ + D + +++G+ + + PF + +DP ++ +
Sbjct: 333 SVLSESLRLTA-APFITREVVVDLAMPMADGREFNLRRGDRLLLF-PFLSPQRDPEIYTD 390
Query: 385 PEEFVGHRFV 394
PE F +RF+
Sbjct: 391 PEVFKYNRFL 400
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 296 KLHRQLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHS 355
++ R++ +E+ TV+ + + ++ + E R VPF + +
Sbjct: 311 RVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTR---DT 367
Query: 356 HDAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRFV 394
+ I KG +F Q D +++ NP EF+ RF+
Sbjct: 368 SLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFL 406
>pdb|2IAG|A Chain A, Crystal Structure Of Human Prostacyclin Synthase
pdb|2IAG|B Chain B, Crystal Structure Of Human Prostacyclin Synthase
Length = 482
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 328 SVVYEALRIEPPVPFQYGKAKVDMVIHSHDA-AYEIKKGNMIFGYQPFAT--KDPRVFEN 384
SV+ E+LR+ PF + VD+ + D + +++G+ + + PF + +DP ++ +
Sbjct: 321 SVLSESLRLTA-APFITREVVVDLAMPMADGREFNLRRGDRLLLF-PFLSPQRDPEIYTD 378
Query: 385 PEEFVGHRFV 394
PE F +RF+
Sbjct: 379 PEVFKYNRFL 388
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 297 LHRQLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSH 356
+ ++L +EI V+ + T+ + +M VV E LR+ P K D+ I+
Sbjct: 306 VQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEIN-- 363
Query: 357 DAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRF 393
I KG ++ +DP+ + PE+F+ RF
Sbjct: 364 --GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERF 398
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 297 LHRQLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSH 356
+ ++L +EI V+ + T+ + +M VV E LR+ P K D+ I+
Sbjct: 307 VQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEIN-- 364
Query: 357 DAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRF 393
I KG ++ +DP+ + PE+F+ RF
Sbjct: 365 --GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERF 399
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 69 ASNPNVIAVLDAVSFPVLFDTSKVEKLSFTGGHRVCAYLDPSEPKHSSLKSFILSTLASK 128
SN + V+ + P +F T +V+ ++C LDP SS+ + S+L S
Sbjct: 1 GSNKLHLRVVTLIEHPFVF-TREVDDEGLCPAGQLC--LDPMT-NDSSMLDRLFSSLHSS 56
Query: 129 HDKFIPLFKTCVSELFIELEDQMAE 153
+D FK C I+L +Q+AE
Sbjct: 57 NDTVPIKFKKCCYGYCIDLLEQLAE 81
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 297 LHRQLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSH 356
+ ++L +EI V+ + T+ + +M VV E LR+ P K D+ I+
Sbjct: 305 VQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEIN-- 362
Query: 357 DAAYEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRF 393
I KG ++ +DP+ + PE+F+ RF
Sbjct: 363 --GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERF 397
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 374 FATKDPRVFENPEEFVGHRFVGEGEKLLKYVYWSNGRETEDPTAENK 420
T + +V E PEE V +F+G G L ++ W+ R E + ENK
Sbjct: 13 LTTGEVKVQEYPEE-VAKKFIG-GRGLAAWILWNEARGVEPLSPENK 57
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 330 VYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFENPEEFV 389
+YEA+R VP A ++ Y I K ++F Q DP + NPE F
Sbjct: 345 LYEAMRFSSFVPVTIPHATT---ANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFD 401
Query: 390 GHRFV 394
RF+
Sbjct: 402 PARFL 406
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 266 NLVFLSTLNAYGG--------LKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTF 317
NLV ++TL + G L+ GF L+K ++ ++ +EI V+ F
Sbjct: 268 NLV-MTTLQLFVGGTETVSTTLRYGFLLLMKH-----PEVEAKVHEEIDRVIGKNRQPKF 321
Query: 318 AALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATK 377
+M ++V++E R +P + +V D + + KG ++ +
Sbjct: 322 EDRAKMPYMEAVIHEIQRFGDVIPMSLAR-RVKKDTKFRD--FFLPKGTEVYPMLGSVLR 378
Query: 378 DPRVFENPEEFVGHRFVGE 396
DP F NP++F F+ E
Sbjct: 379 DPSFFSNPQDFNPQHFLNE 397
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 300 QLADEIRTVVKAEGGVTFAALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAA 359
++ +EI VV M T +VV+E R +P A V +
Sbjct: 305 KVQEEIERVVGRNRSPCMQDRGHMPYTDAVVHEVQRYIDLIPTSLPHAVTCDVKFRN--- 361
Query: 360 YEIKKGNMIFGYQPFATKDPRVFENPEEFVGHRFVGEGEKLLKYVYW 406
Y I KG I D + F NPE F F+ EG K Y+
Sbjct: 362 YLIPKGTTILTSLTSVLHDNKEFPNPEMFDPRHFLDEGGNFKKSNYF 408
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 266 NLVFLSTLNAYGG--------LKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTF 317
NLV ++TL + G L+ GF L+K ++ ++ +EI V+ F
Sbjct: 268 NLV-MTTLQLFIGGTETVSTTLRYGFLLLMKH-----PEVEAKVHEEIDRVIGKNRQPKF 321
Query: 318 AALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATK 377
+M ++V++E R +P + +V D + + KG ++ +
Sbjct: 322 EDRAKMPYMEAVIHEIQRFGDVIPMSLAR-RVKKDTKFRD--FFLPKGTEVYPMLGSVLR 378
Query: 378 DPRVFENPEEFVGHRFVGE 396
DP F NP++F F+ E
Sbjct: 379 DPSFFSNPQDFNPQHFLNE 397
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 266 NLVFLSTLNAYGG--------LKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTF 317
NLV ++TL + G L+ GF L+K ++ ++ +EI V+ F
Sbjct: 268 NLV-MTTLQLFIGGTETVSTTLRYGFLLLMKH-----PEVEAKVHEEIDRVIGKNRQPKF 321
Query: 318 AALERMVLTKSVVYEALRIEPPVPFQYGKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATK 377
+M ++V++E R +P + +V D + + KG ++ +
Sbjct: 322 EDRAKMPYMEAVIHEIQRFGDVIPMSLAR-RVKKDTKFRD--FFLPKGTEVYPMLGSVLR 378
Query: 378 DPRVFENPEEFVGHRFVGE 396
DP F NP++F F+ E
Sbjct: 379 DPSFFSNPQDFNPQHFLNE 397
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 362 IKKGNMIFGYQPFATKDPRVFENPEEF 388
IKKG M+F P A +D VF P+ F
Sbjct: 320 IKKGEMVFLLIPSALRDGTVFSRPDVF 346
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 362 IKKGNMIFGYQPFATKDPRVFENPEEF 388
IKKG M+F P A +D VF P+ F
Sbjct: 320 IKKGEMVFLLIPSALRDGTVFSRPDVF 346
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 266 NLVFLSTLNAYGGLKTGFPALIKWVGLAGEKLHRQLADEIRTVVKAEGGVTFAALERMVL 325
+L F T L+ G L+K+ + EKLH +EI V+ + M
Sbjct: 274 DLFFAGTETTSTTLRYGLLILMKYPEIE-EKLH----EEIDRVIGPSRIPAIKDRQEMPY 328
Query: 326 TKSVVYEALRIEPPVPFQY-GKAKVDMVIHSHDAAYEIKKGNMIFGYQPFATKDPRVFEN 384
+VV+E R VP +A D + Y I KG ++ D + F +
Sbjct: 329 MDAVVHEIQRFITLVPSNLPHEATRDTIFR----GYLIPKGTVVVPTLDSVLYDNQEFPD 384
Query: 385 PEEFVGHRFVGEGEK 399
PE+F F+ E K
Sbjct: 385 PEKFKPEHFLNENGK 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,021,911
Number of Sequences: 62578
Number of extensions: 599311
Number of successful extensions: 1068
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 51
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)