BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043893
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E1T|A Chain A, X-Ray Crystal Structure Of The Transmembrane Beta-Domain
From Invasin From Yersinia Pseudotuberculosis
Length = 245
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 124 IPRFNATDMLERLKNKRVIIVG-DSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLR 182
+P+ M E+ +RV + G D+L RN + A + YT +P V VD + G
Sbjct: 137 LPQLGGKLMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGK-SSKH 195
Query: 183 ALDYDCSVEF-YWSPFLVQLDASNALGSRIL 212
++ + + + F QL S G+R+L
Sbjct: 196 ETQWNLQMNYRFGESFQSQLSPSAVAGTRLL 226
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 118 KAEGCEIPRFNATDMLERLK----NKRVIIVGDSLNRNQWE-SLACL 159
KA ++ + D++ERLK K+V +V DS+ R+ WE SL CL
Sbjct: 183 KAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCL 229
>pdb|3O7U|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Zinc And Phosphono-Cytosine
pdb|3RN6|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Zinc And Isoguanine
pdb|3R0D|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Two Zinc Atoms In The Active Site
Length = 427
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 133 LERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRAL 184
+ER ++ ++ D + + W++L + I R HVDV + L+A+
Sbjct: 86 IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 137
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 121 GCEIPRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKV 180
GC+ R N + R +VGDS N+ W + L T P R V +Q+ V
Sbjct: 205 GCDGARSNVRRAIGRQ------LVGDSANQA-WGVMDVLAVTDFPDVRYKVAIQSEQGNV 257
Query: 181 LR-ALDYDCSVEFYWSPFLVQLDASNALGSRILRLDELSASAQK 223
L + V FY + +LDA + SR + +++L A+AQ+
Sbjct: 258 LIIPREGGHLVRFYVE--MDKLDADERVASRNITVEQLIATAQR 299
>pdb|1R9Y|A Chain A, Bacterial Cytosine Deaminase D314a Mutant.
pdb|1RA5|A Chain A, Bacterial Cytosine Deaminase D314a Mutant Bound To
5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine
Length = 430
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 133 LERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRAL 184
+ER ++ ++ D + + W++L + I R HVDV + L+A+
Sbjct: 89 IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 140
>pdb|3G77|A Chain A, Bacterial Cytosine Deaminase V152aF316CD317G MUTANT
Length = 423
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 133 LERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRAL 184
+ER ++ ++ D + + W++L + I R HVDV + L+A+
Sbjct: 82 IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 133
>pdb|1R9Z|A Chain A, Bacterial Cytosine Deaminase D314s Mutant.
pdb|1RAK|A Chain A, Bacterial Cytosine Deaminase D314s Mutant Bound To
5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine
Length = 430
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 133 LERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRAL 184
+ER ++ ++ D + + W++L + I R HVDV + L+A+
Sbjct: 89 IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 140
>pdb|1K6W|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase
pdb|1K70|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase Bound
To 4- Hydroxy-3,4-Dihydro-1h-Pyrimidin-2-One
Length = 426
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 133 LERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRAL 184
+ER ++ ++ D + + W++L + I R HVDV + L+A+
Sbjct: 85 IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 136
>pdb|1R9X|A Chain A, Bacterial Cytosine Deaminase D314g Mutant.
pdb|1RA0|A Chain A, Bacterial Cytosine Deaminase D314g Mutant Bound To
5-Fluoro-4-(S)- Hydroxy-3,4-Dihydropyrimidine
Length = 430
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 133 LERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRAL 184
+ER ++ ++ D + + W++L + I R HVDV + L+A+
Sbjct: 89 IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 140
>pdb|2IMR|A Chain A, Crystal Structure Of Amidohydrolase Dr_0824 From
Deinococcus Radiodurans
Length = 420
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 296 EHKGEQWCYNTTE-PITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLN 342
EH E + T P+ D A +P ++ E++ R G TPV+YL+
Sbjct: 243 EHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLD 290
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 277 IDENVDATKTMVFFRSISPEHKGEQWCYNTTEPITDESYVAKF 319
I +D K +F +S PEH W + T P+ D + + +F
Sbjct: 70 IAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQF 112
>pdb|3C8D|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
Length = 403
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 108 PDVEYEKWTWKAEGCEIPR----FNATDMLERLKNKRVIIVGDSLNRNQ--WESLACLLY 161
P++ ++ WK+E + R F D+ + V++ G+ ++ W L L +
Sbjct: 164 PEIPAKEIIWKSERLKNSRRVWIFTTGDVTAEERPLAVLLDGEFWAQSMPVWPVLTSLTH 223
Query: 162 TAIPPSRVHVDVQNGVYKVLRALDYDCSVEFYWS-------------PFLVQLDASNALG 208
P V+V + + + RA + C+ +F+ + PF + D + G
Sbjct: 224 RQQLPPAVYVLI-DAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAG 282
Query: 209 SRILRLDELSASAQKWKGADVMVFNTG-HWWVHRGKIKAWELFEHDGKLMENLNVDE 264
L L A + ++ +G +WW HRG + +G L+E L E
Sbjct: 283 QSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGG-------QQEGVLLEKLKAGE 332
>pdb|2B20|A Chain A, Crystal Structure Of Enterochelin Esterase From Shigella
Flexneri Enterochelin Esterase
pdb|3C87|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C87|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C8H|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
Length = 403
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 108 PDVEYEKWTWKAEGCEIPR----FNATDMLERLKNKRVIIVGDSLNRNQ--WESLACLLY 161
P++ ++ WK+E + R F D+ + V++ G+ ++ W L L +
Sbjct: 164 PEIPAKEIIWKSERLKNSRRVWIFTTGDVTAEERPLAVLLDGEFWAQSXPVWPVLTSLTH 223
Query: 162 TAIPPSRVHVDVQNGVYKVLRALDYDCSVEFYWS-------------PFLVQLDASNALG 208
P V+V + + + RA + C+ +F+ + PF + D + G
Sbjct: 224 RQQLPPAVYVLI-DAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAG 282
Query: 209 SRILRLDELSASAQKWKGADVMVFNTG-HWWVHRGKIKAWELFEHDGKLMENLNVDE 264
L L A + ++ +G +WW HRG + +G L+E L E
Sbjct: 283 QSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGG-------QQEGVLLEKLKAGE 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,772,412
Number of Sequences: 62578
Number of extensions: 535612
Number of successful extensions: 1256
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 23
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)