BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043893
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
Length = 781
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 31/230 (13%)
Query: 116 TWKAEGCEIPRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQN 175
W+ GC + ++ +T+ L+ KR+ VGDS R L Y+ I V
Sbjct: 63 VWQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQ-------LFYSFIKMMNPEVKEVG 115
Query: 176 GVYKVLRALDYDCSVEFYWSPFLVQLDASNALGSRILRLDELSASAQKWKGADVMVFNTG 235
++ + +D D +V F W + +N+L +++ E SAS V++
Sbjct: 116 NKHENIPFVDGDSTVNFLWYA-----EVNNSLKEQLMLWTEGSASK-----PHVIIIGAA 165
Query: 236 HWWV--HRGKIKAWELFEHDGKLMENLNVDEAFEIAMETWAHWI------DENVDATKTM 287
W + H GK +A LF++ L + E ++A + +W+ ++ + ++ M
Sbjct: 166 TWSIKLHNGKSEA--LFQYKANLTAIADTLE--KLAEHSEVYWVLQDPVYEDVLSESRKM 221
Query: 288 VFFRSISPEHKGEQWCYNTTEPITDESYVAKFPKSMVEIVKRTIGGMSTP 337
+ I+ ++ NT++ ++ ++ +E + +++ G+ P
Sbjct: 222 ITNEQINLYNEAAVSTLNTSK--KKVKFLEASRQAAMETISQSVDGLHLP 269
>sp|Q2G8S7|TRPB_NOVAD Tryptophan synthase beta chain OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=trpB PE=3 SV=1
Length = 404
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 2 ETSFTINGIWKICISVSFFLGCIIFVLSLNSGRSNISLFTVRSVAISVTPST-GFATLIK 60
ET +G+ + F L C+IF+ + + R ++F ++ + V P T G TL
Sbjct: 120 ETGAGQHGVATATVCARFGLPCVIFMGATDVARQAPNVFRMKLLGAEVVPVTAGAGTLKD 179
Query: 61 SDNPVEEEKLCNIFNGKWVYNGEASP 86
+ N + + N+ N ++ A P
Sbjct: 180 AMNEALRDWVANVHNTFYIIGTAAGP 205
>sp|Q6P1Z5|PED1A_MOUSE PC-esterase domain-containing protein 1A OS=Mus musculus GN=Pced1a
PE=2 SV=2
Length = 449
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 121 GCEIPRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLL 160
G + F+A+++ + L NK V+I+GDS+ R ++ L LL
Sbjct: 15 GSAMVHFHASEVQQLLHNKFVVILGDSIQRAVYKDLVLLL 54
>sp|Q2GG09|DAPA_EHRCR 4-hydroxy-tetrahydrodipicolinate synthase OS=Ehrlichia chaffeensis
(strain Arkansas) GN=dapA PE=3 SV=1
Length = 297
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 36/176 (20%)
Query: 53 TGFATLIKSDNPVEEEKLCNIFNGKWVYNGEA-SPLYNEAQCPFLSDQVSCQRNGRPDVE 111
T T K D ++E C++ + N P A+CP LS
Sbjct: 9 TALITPFKDDFSIDENAFCHLIEEQISNNIHGLVPCGTTAECPTLS-------------- 54
Query: 112 YEKWTWKAEGCEIPRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLLYTA---IPPSR 168
+E++ E C ++ NKRV I+ S + + E++ LY + +
Sbjct: 55 FEEYCKVIELCV-----------KITNKRVPIIAGSSSNSTQEAIKRTLYVQSLNVDAAL 103
Query: 169 VHVDVQN-----GVYKVLRALD--YDCSVEFYWSPFLVQLDASNALGSRILRLDEL 217
V V N G+Y+ +A+ + + Y P +DAS+AL +RIL L +
Sbjct: 104 VVVPYYNRPSDEGIYQHFKAVHDATNLPIIAYNIPNRSAIDASDALLARILSLPRI 159
>sp|P28304|QOR1_ECOLI Quinone oxidoreductase 1 OS=Escherichia coli (strain K12) GN=qorA
PE=1 SV=1
Length = 327
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 118 KAEGCEIPRFNATDMLERLK----NKRVIIVGDSLNRNQWE-SLACL 159
KA ++ + D++ERLK K+V +V DS+ R+ WE SL CL
Sbjct: 183 KAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCL 229
>sp|Q10265|HSP71_SCHPO Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssa1 PE=1 SV=2
Length = 644
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 314 SYVAKFPKSMVEIVKRTIGGMSTP--VKYLNITKL------SQYRVDAHPTIYTKKREFL 365
S V F + VEI+ G +TP V + + +L +Q ++ H TI+ KR L
Sbjct: 14 SCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKR--L 71
Query: 366 IAKQQMQQETYADCSHW 382
I ++ E +D HW
Sbjct: 72 IGRRFNDPEVQSDMKHW 88
>sp|O59855|HSP72_SCHPO Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssa2 PE=1 SV=3
Length = 647
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 314 SYVAKFPKSMVEIVKRTIGGMSTP--VKYLNITKL------SQYRVDAHPTIYTKKREFL 365
S V F + VEI+ G +TP V + + +L +Q ++ H TI+ KR L
Sbjct: 14 SCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKR--L 71
Query: 366 IAKQQMQQETYADCSHW 382
I ++ E +D HW
Sbjct: 72 IGRKFDDPEVQSDMKHW 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,891,050
Number of Sequences: 539616
Number of extensions: 6481909
Number of successful extensions: 14124
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 14113
Number of HSP's gapped (non-prelim): 20
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)