BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043898
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 27 AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
AISC V + PC++Y + P C+K AA +
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 87 NP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
+ N+ A ++P+ CG+++P +S + DCS++N
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKMN 87
I+C V + PC+ Y + G+G P C+K AA+ +
Sbjct: 1 ITCGQVNSAVGPCLTYARGGAG-PSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 88 P-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
N+ A ++P+ CG+++P +S ++DCS+++
Sbjct: 60 GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 91
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM- 86
I C V +RPC++Y++ G G P C+K A+ +
Sbjct: 1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 87 NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
N N A+++P CG+ LP +S N+DCS++
Sbjct: 60 NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 27 AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
AI+C V +L PC+ YL++ P C+K+AA +
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 87 NP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
+ N A LP+ CG+ +P +SP+ DCSK+
Sbjct: 59 SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 27 AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
AISC V DL PC+ YL G G P C+K+AA +
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACN-CLKSAAGSI 59
Query: 87 NP-NSQLAQALPTNCGITLPVPVSPNVDCSKI 117
N+ A ALP CG+ +P +S +C+ +
Sbjct: 60 TKLNTNNAAALPGKCGVNIPYKISTTTNCNTV 91
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 29 SCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM-N 87
C V +RPC++Y++ G G P C+K A+ + N
Sbjct: 2 DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 88 PNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
N A+++P CG+ LP +S N+DCS++
Sbjct: 61 LNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM- 86
++C V ++PC+ Y++ G G P C+K A+ +
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 87 NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
N N A ++P+ C + +P +SP++DCS+I
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAA---Q 84
++C V +L C+ +L+ G PP C+K AA +
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCS-CLKAAAGAVR 59
Query: 85 KMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
+NPN+ A+ALP CG+ +P +S + +C+ IN
Sbjct: 60 GINPNN--AEALPGKCGVNIPYKISTSTNCNSIN 91
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM- 86
++C V ++PC+ Y++ G G P C+K A+ +
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 87 NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
N N A ++P+ C + +P +SP++DCS+I
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIK---TAAQ 84
I+C V L PC+ Y++ G PP C+K +
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACN-CLKQLSASVP 60
Query: 85 KMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
+NPN+ A ALP CG+++P +S + +C+ +
Sbjct: 61 GVNPNN--AAALPGKCGVSIPYKISASTNCATV 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,425,612
Number of Sequences: 62578
Number of extensions: 56007
Number of successful extensions: 94
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 12
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)