Query 043898
Match_columns 118
No_of_seqs 106 out of 904
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 5.4E-27 1.2E-31 153.2 5.3 88 28-115 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 7.1E-16 1.5E-20 97.4 4.5 66 30-105 1-69 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 5.7E-14 1.2E-18 85.7 3.6 61 37-102 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.4 7.9E-14 1.7E-18 91.0 1.2 72 26-106 18-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 7.2E-12 1.6E-16 77.9 4.5 59 35-105 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 1.7E-10 3.8E-15 71.6 4.9 68 30-106 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 1.1E-11 2.4E-16 80.2 -4.2 64 35-106 13-87 (90)
8 cd01958 HPS_like HPS_like: Hyd 94.9 0.043 9.3E-07 35.7 3.7 76 29-114 3-85 (85)
9 PF14547 Hydrophob_seed: Hydro 94.8 0.013 2.7E-07 38.1 1.0 75 30-114 2-84 (85)
10 PF07172 GRP: Glycine rich pro 90.1 0.22 4.8E-06 32.9 1.9 17 1-18 1-17 (95)
11 PF07127 Nodulin_late: Late no 37.9 51 0.0011 19.0 2.9 32 1-32 1-32 (54)
12 PF05617 Prolamin_like: Prolam 31.7 58 0.0013 19.4 2.6 16 49-64 26-41 (70)
13 PLN00214 putative protein; Pro 26.8 53 0.0012 22.5 1.9 23 40-62 47-72 (115)
14 PF10731 Anophelin: Thrombin i 26.1 1.2E+02 0.0025 18.5 3.1 17 1-17 1-17 (65)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.94 E-value=5.4e-27 Score=153.23 Aligned_cols=88 Identities=45% Similarity=0.942 Sum_probs=83.0
Q ss_pred CCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCCC
Q 043898 28 ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLPV 106 (118)
Q Consensus 28 ~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~~ 106 (118)
++|.++...|.||++|+++++..|+++||++++++++.++|+.|++.+|+|++....+++ ||.+|+.+||++||++++|
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 369999999999999999887789999999999999999999999999999998777786 9999999999999999999
Q ss_pred CCCCCcCCC
Q 043898 107 PVSPNVDCS 115 (118)
Q Consensus 107 ~i~~~~dC~ 115 (118)
+|++++||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.61 E-value=7.1e-16 Score=97.43 Aligned_cols=66 Identities=26% Similarity=0.567 Sum_probs=54.2
Q ss_pred chhhhcCccccHHHHhCCC--CCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCC
Q 043898 30 CSDVLKDLRPCVNYLKSGS--GKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLP 105 (118)
Q Consensus 30 C~~~~~~L~~C~~yl~~~~--~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~ 105 (118)
|+..+..|++|++|+++++ ..|+++||+++++++ + .|+|.+.....++ ||.+|+.+||++||+++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------L--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------c--CCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 5555578999999999875 368999999999853 3 3999886655555 999999999999999987
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.46 E-value=5.7e-14 Score=85.73 Aligned_cols=61 Identities=36% Similarity=0.852 Sum_probs=49.7
Q ss_pred ccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC-CC-CHHHHhhhhhccCC
Q 043898 37 LRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM-NP-NSQLAQALPTNCGI 102 (118)
Q Consensus 37 L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~-~i-n~~~a~~LP~~Cgv 102 (118)
|.||++|+++++..|+++||++++++++. |+++.|.++++..... ++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 67999999987678999999999999854 5667777777654443 34 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.39 E-value=7.9e-14 Score=91.00 Aligned_cols=72 Identities=32% Similarity=0.705 Sum_probs=44.0
Q ss_pred ccCCchhhhcCcccc---HHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCc-CCCCCCHHHHhhhhhccC
Q 043898 26 AAISCSDVLKDLRPC---VNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAA-QKMNPNSQLAQALPTNCG 101 (118)
Q Consensus 26 a~~~C~~~~~~L~~C---~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~-~~~~in~~~a~~LP~~Cg 101 (118)
...+|. ..|.+| ..|+.++ ..|+++||++++++.+. |..+.|..+++.. ..++||.+|+..||++||
T Consensus 18 ~~~~c~---~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg 88 (96)
T PF14368_consen 18 CCCSCA---NSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQA-----DPPCLCQLLNSPGAPGFGINVTRALALPAACG 88 (96)
T ss_dssp BTTB-H---CCCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCT
T ss_pred CcchhH---HHHhccccchhccCCC-CCCCHHHHHHHHHhccC-----CCCCHHHhcCccccccCCcCHHHHHHHHHHcC
Confidence 344553 356666 7888854 78999999999998532 3445555555544 455699999999999999
Q ss_pred CCCCC
Q 043898 102 ITLPV 106 (118)
Q Consensus 102 v~~~~ 106 (118)
++.+.
T Consensus 89 ~~~~~ 93 (96)
T PF14368_consen 89 VPVPP 93 (96)
T ss_dssp SS-S-
T ss_pred CCCCC
Confidence 99873
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.26 E-value=7.2e-12 Score=77.91 Aligned_cols=59 Identities=29% Similarity=0.653 Sum_probs=48.5
Q ss_pred cCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC--CCHHHHhhhhhccCCCCC
Q 043898 35 KDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN--PNSQLAQALPTNCGITLP 105 (118)
Q Consensus 35 ~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~--in~~~a~~LP~~Cgv~~~ 105 (118)
+.|.+|++|++++ ..||++||+.+|+. ..|+|.+.....++ ||.+++.+||++||+++|
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~-----------~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKEQ-----------QSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhcC-----------CCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence 4799999999977 68999999999982 26888764334443 999999999999999986
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.09 E-value=1.7e-10 Score=71.56 Aligned_cols=68 Identities=37% Similarity=0.829 Sum_probs=53.7
Q ss_pred chhhhcCccccHHHHhCC--CCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC------CCHHHHhhhhhccC
Q 043898 30 CSDVLKDLRPCVNYLKSG--SGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN------PNSQLAQALPTNCG 101 (118)
Q Consensus 30 C~~~~~~L~~C~~yl~~~--~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~------in~~~a~~LP~~Cg 101 (118)
|.+....+.+|.+|++++ ...|+..||++++.+. ...|+|........+ ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 566777888999999986 4578899999999984 257999764322222 48999999999999
Q ss_pred CCCCC
Q 043898 102 ITLPV 106 (118)
Q Consensus 102 v~~~~ 106 (118)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99875
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.97 E-value=1.1e-11 Score=80.23 Aligned_cols=64 Identities=31% Similarity=0.692 Sum_probs=50.4
Q ss_pred cCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCC-----------CCCCHHHHhhhhhccCCC
Q 043898 35 KDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQK-----------MNPNSQLAQALPTNCGIT 103 (118)
Q Consensus 35 ~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~-----------~~in~~~a~~LP~~Cgv~ 103 (118)
..+.+|.+|++++...|+..||++|+++. +++.|..++..+.+ ..++..++..||+.||++
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~ 84 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS 84 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccHHHHhcccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence 45899999999876679999999999995 23455555543333 138899999999999999
Q ss_pred CCC
Q 043898 104 LPV 106 (118)
Q Consensus 104 ~~~ 106 (118)
+++
T Consensus 85 ~~~ 87 (90)
T PF00234_consen 85 PPY 87 (90)
T ss_dssp SSS
T ss_pred CCC
Confidence 987
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=94.94 E-value=0.043 Score=35.66 Aligned_cols=76 Identities=25% Similarity=0.491 Sum_probs=49.1
Q ss_pred CchhhhcCccccHHHHhCC----CCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC--CCHH-HHhhhhhccC
Q 043898 29 SCSDVLKDLRPCVNYLKSG----SGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN--PNSQ-LAQALPTNCG 101 (118)
Q Consensus 29 ~C~~~~~~L~~C~~yl~~~----~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~--in~~-~a~~LP~~Cg 101 (118)
.|......|..|..-+..- +..|..+||.-++.+.+. .-++|+|-...++.++ +|.. ++..|-..||
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG 76 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG 76 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence 3554445777888877421 235668999999999754 2478999754433333 3333 3456677899
Q ss_pred CCCCCCCCCCcCC
Q 043898 102 ITLPVPVSPNVDC 114 (118)
Q Consensus 102 v~~~~~i~~~~dC 114 (118)
...| ++|.|
T Consensus 77 k~~P----~gf~C 85 (85)
T cd01958 77 RNVP----PGFTC 85 (85)
T ss_pred CcCC----CCCcC
Confidence 9987 55554
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=94.84 E-value=0.013 Score=38.14 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=48.4
Q ss_pred chhhhcCccccHHHHhC----CCCCCcHhhhHHHHhhhhhcccccCCcccceeec--cCcCC-CCCCHH-HHhhhhhccC
Q 043898 30 CSDVLKDLRPCVNYLKS----GSGKPPAACCSGASALASTATSTADKKTACGCIK--TAAQK-MNPNSQ-LAQALPTNCG 101 (118)
Q Consensus 30 C~~~~~~L~~C~~yl~~----~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~--~~~~~-~~in~~-~a~~LP~~Cg 101 (118)
|......|.-|.+.+.- .+..+..+||.-++.+.+. .-+.|+|-. ....+ .++|.. .+..|-..||
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG 75 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG 75 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence 44444478889888811 1134678999999999743 236899954 33233 223232 3567888999
Q ss_pred CCCCCCCCCCcCC
Q 043898 102 ITLPVPVSPNVDC 114 (118)
Q Consensus 102 v~~~~~i~~~~dC 114 (118)
...| ++|+|
T Consensus 76 k~~p----~gf~C 84 (85)
T PF14547_consen 76 KTVP----SGFTC 84 (85)
T ss_pred CcCc----CCCcC
Confidence 9887 77776
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.08 E-value=0.22 Score=32.89 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=8.2
Q ss_pred CCchhhHHHHHHHHHHHH
Q 043898 1 MNSSRVVVSAIAALIMFL 18 (118)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (118)
|+| |.|+.+..+|.+++
T Consensus 1 MaS-K~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAALL 17 (95)
T ss_pred Cch-hHHHHHHHHHHHHH
Confidence 884 44444444433333
No 11
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=37.86 E-value=51 Score=19.00 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCchhhHHHHHHHHHHHHhhCccCcccCCchh
Q 043898 1 MNSSRVVVSAIAALIMFLFLTPKSEAAISCSD 32 (118)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~a~a~~~C~~ 32 (118)
|+...+|+.+..+.+-+++++..++....|..
T Consensus 1 Ma~ilKFvY~mIiflslflv~~~~~~~~~C~~ 32 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVTNVDAIIPCKT 32 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhcccCCCcccCc
Confidence 77776665544333322333333333445543
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=31.71 E-value=58 Score=19.36 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=13.6
Q ss_pred CCCcHhhhHHHHhhhh
Q 043898 49 GKPPAACCSGASALAS 64 (118)
Q Consensus 49 ~~Ps~~CC~~l~~~~~ 64 (118)
...+++||.++..+.+
T Consensus 26 ~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 26 KNIGPECCKAINKMGK 41 (70)
T ss_pred CCCChHHHHHHHHHhH
Confidence 5788999999999863
No 13
>PLN00214 putative protein; Provisional
Probab=26.85 E-value=53 Score=22.45 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=14.4
Q ss_pred cHHHHhC---CCCCCcHhhhHHHHhh
Q 043898 40 CVNYLKS---GSGKPPAACCSGASAL 62 (118)
Q Consensus 40 C~~yl~~---~~~~Ps~~CC~~l~~~ 62 (118)
|..=+.. .+..+|.+||+.+=..
T Consensus 47 Ca~EI~a~i~~N~t~s~~CC~~LVk~ 72 (115)
T PLN00214 47 CALDIIAVVFENGTLIDPCCNDLVKE 72 (115)
T ss_pred hHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 6554432 1246799999986554
No 14
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.12 E-value=1.2e+02 Score=18.53 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.2
Q ss_pred CCchhhHHHHHHHHHHH
Q 043898 1 MNSSRVVVSAIAALIMF 17 (118)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (118)
||++-.+..++|+.+++
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 77754333444444444
Done!