Query 043900
Match_columns 953
No_of_seqs 960 out of 6231
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.1E-70 1.4E-74 668.9 39.6 553 4-567 100-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-64 3.7E-69 620.9 38.0 540 3-557 49-722 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-58 1.3E-62 558.4 42.0 550 4-556 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-56 1.2E-60 541.3 42.9 522 4-533 49-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.8E-56 2E-60 531.9 40.8 511 8-533 16-565 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 4E-55 1.4E-59 541.7 41.6 508 5-532 25-564 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-55 4.6E-60 528.8 34.8 504 8-533 15-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.9E-54 6.5E-59 518.7 39.8 496 4-508 33-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-53 5.5E-58 527.3 40.8 526 7-556 7-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 9E-54 3.1E-58 512.9 33.6 488 3-508 31-562 (606)
11 3omv_A RAF proto-oncogene seri 100.0 6.1E-53 2.1E-57 449.7 19.3 264 630-941 35-303 (307)
12 4asz_A BDNF/NT-3 growth factor 100.0 4.8E-53 1.6E-57 451.1 15.3 271 631-941 13-292 (299)
13 4aoj_A High affinity nerve gro 100.0 2.8E-52 9.5E-57 451.6 21.1 269 631-939 41-320 (329)
14 2z63_A TOLL-like receptor 4, v 100.0 1.1E-50 3.8E-55 482.7 35.3 486 8-536 11-539 (570)
15 4gt4_A Tyrosine-protein kinase 100.0 6E-52 2E-56 444.6 16.7 265 632-936 27-304 (308)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-50 1.5E-54 475.0 31.2 485 9-533 10-515 (549)
17 4eco_A Uncharacterized protein 100.0 2E-51 6.9E-56 491.5 17.0 454 3-531 80-603 (636)
18 4fih_A Serine/threonine-protei 100.0 6.3E-51 2.2E-55 439.2 17.3 250 631-931 74-323 (346)
19 4b9d_A Serine/threonine-protei 100.0 4.3E-51 1.5E-55 441.3 14.2 251 631-931 24-276 (350)
20 2z63_A TOLL-like receptor 4, v 100.0 1.2E-48 4.1E-53 465.2 35.7 509 29-556 8-536 (570)
21 4ase_A Vascular endothelial gr 100.0 1.8E-50 6E-55 440.9 18.1 276 627-940 60-349 (353)
22 3fpq_A Serine/threonine-protei 100.0 2.1E-50 7.2E-55 427.0 18.1 251 634-931 29-282 (290)
23 4ecn_A Leucine-rich repeat pro 100.0 4.8E-49 1.7E-53 477.0 30.7 445 3-528 322-864 (876)
24 4g3f_A NF-kappa-beta-inducing 100.0 3.1E-50 1.1E-54 432.7 17.4 259 630-941 57-319 (336)
25 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.5E-50 5E-55 429.7 14.2 250 631-931 32-284 (311)
26 3hmm_A TGF-beta receptor type- 100.0 2.7E-49 9.2E-54 425.8 21.3 281 631-939 3-298 (303)
27 4fie_A Serine/threonine-protei 100.0 9.5E-50 3.2E-54 440.8 18.0 250 631-931 151-400 (423)
28 2z81_A CD282 antigen, TOLL-lik 100.0 7.9E-49 2.7E-53 464.3 26.4 482 31-554 8-513 (549)
29 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-49 1.5E-53 462.9 23.3 457 7-533 3-486 (520)
30 3hyh_A Carbon catabolite-derep 100.0 4.4E-49 1.5E-53 413.0 17.1 247 630-931 12-262 (275)
31 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-46 4.6E-51 454.0 36.5 528 10-554 37-583 (635)
32 4eco_A Uncharacterized protein 100.0 2.4E-48 8.3E-53 464.9 20.4 432 53-553 82-602 (636)
33 4ecn_A Leucine-rich repeat pro 100.0 3E-47 1E-51 461.4 28.6 365 100-532 423-844 (876)
34 3ubd_A Ribosomal protein S6 ki 100.0 6.1E-49 2.1E-53 417.7 10.0 243 631-926 24-271 (304)
35 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-46 1.2E-50 450.5 34.5 512 4-532 52-584 (635)
36 4g31_A Eukaryotic translation 100.0 6.8E-48 2.3E-52 412.3 17.3 257 631-931 5-279 (299)
37 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-46 6.6E-51 440.4 24.2 458 31-554 3-484 (520)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-46 1.8E-50 440.2 26.8 451 31-533 34-515 (562)
39 4b99_A Mitogen-activated prote 100.0 3E-46 1E-50 415.0 19.8 286 630-931 53-344 (398)
40 4f9c_A Cell division cycle 7-r 100.0 1.7E-45 5.8E-50 404.8 16.6 200 629-851 19-250 (361)
41 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.3E-44 2.5E-48 421.9 26.0 456 49-554 28-513 (562)
42 3v5w_A G-protein coupled recep 100.0 1.3E-43 4.6E-48 408.4 19.2 250 630-931 188-449 (689)
43 2qkw_B Protein kinase; three-h 100.0 7.8E-43 2.7E-47 382.5 23.7 285 622-939 30-316 (321)
44 3uto_A Twitchin; kinase, muscl 100.0 2.5E-43 8.5E-48 411.6 20.4 253 630-931 156-410 (573)
45 1jl5_A Outer protein YOPM; leu 100.0 2E-42 6.7E-47 395.3 25.5 387 26-529 9-410 (454)
46 3v47_A TOLL-like receptor 5B a 100.0 5.9E-42 2E-46 395.3 25.8 393 30-535 12-415 (455)
47 3s95_A LIMK-1, LIM domain kina 100.0 1.2E-42 4.2E-47 379.0 18.1 269 630-945 9-289 (310)
48 3uim_A Brassinosteroid insensi 100.0 3.7E-42 1.3E-46 378.2 19.7 290 616-936 15-309 (326)
49 3fxz_A Serine/threonine-protei 100.0 6.1E-42 2.1E-46 370.3 18.7 251 630-931 19-269 (297)
50 3soc_A Activin receptor type-2 100.0 7.2E-42 2.5E-46 374.5 18.9 283 629-939 22-319 (322)
51 2nru_A Interleukin-1 receptor- 100.0 9.3E-41 3.2E-45 363.7 26.8 284 617-938 11-306 (307)
52 3v47_A TOLL-like receptor 5B a 100.0 6.5E-41 2.2E-45 386.6 26.8 380 8-409 14-410 (455)
53 2psq_A Fibroblast growth facto 100.0 2.9E-41 1E-45 376.3 22.2 273 630-942 80-368 (370)
54 3lb7_A RAF proto-oncogene seri 100.0 1.8E-41 6.2E-46 368.3 19.3 265 630-942 35-304 (307)
55 3q4u_A Activin receptor type-1 100.0 5E-41 1.7E-45 364.8 21.7 266 630-936 7-300 (301)
56 3ugc_A Tyrosine-protein kinase 100.0 1.1E-41 3.9E-46 368.6 16.0 279 630-941 9-294 (295)
57 3cbl_A C-FES, proto-oncogene t 100.0 9.6E-42 3.3E-46 381.7 14.7 261 630-939 113-375 (377)
58 1jl5_A Outer protein YOPM; leu 100.0 2.5E-40 8.7E-45 377.8 26.5 408 3-534 10-435 (454)
59 2c30_A Serine/threonine-protei 100.0 1.1E-40 3.7E-45 364.6 22.4 262 619-931 23-294 (321)
60 3kul_A Ephrin type-A receptor 100.0 2.1E-41 7.2E-46 371.0 16.3 266 630-944 48-319 (325)
61 3p86_A Serine/threonine-protei 100.0 3.5E-41 1.2E-45 366.2 17.9 264 629-942 35-302 (309)
62 3tki_A Serine/threonine-protei 100.0 3.5E-41 1.2E-45 368.6 17.8 254 630-931 6-261 (323)
63 3vhe_A Vascular endothelial gr 100.0 5.7E-41 2E-45 374.2 18.9 282 621-940 12-357 (359)
64 3fe3_A MAP/microtubule affinit 100.0 4.1E-41 1.4E-45 368.0 16.4 249 629-931 13-264 (328)
65 4eqm_A Protein kinase; transfe 100.0 5.2E-41 1.8E-45 362.6 15.7 264 630-940 10-277 (294)
66 3zgw_A Maternal embryonic leuc 100.0 4.7E-41 1.6E-45 369.3 15.3 252 629-932 8-261 (347)
67 3l9p_A Anaplastic lymphoma kin 100.0 5.1E-41 1.8E-45 374.1 15.2 267 630-939 70-346 (367)
68 2yab_A Death-associated protei 100.0 4.3E-40 1.5E-44 364.1 21.6 253 629-931 10-272 (361)
69 1tki_A Titin; serine kinase, m 100.0 2.4E-40 8.3E-45 361.4 19.3 252 630-931 4-257 (321)
70 2qol_A Ephrin receptor; recept 100.0 9.6E-41 3.3E-45 372.3 16.1 262 630-940 44-311 (373)
71 4euu_A Serine/threonine-protei 100.0 4.5E-40 1.5E-44 360.2 21.0 287 630-938 8-309 (319)
72 3op5_A Serine/threonine-protei 100.0 1.2E-40 4.3E-45 371.4 16.9 277 629-941 33-332 (364)
73 3og7_A AKAP9-BRAF fusion prote 100.0 1.9E-40 6.5E-45 357.6 17.2 261 629-937 22-287 (289)
74 1o6l_A RAC-beta serine/threoni 100.0 2.7E-40 9.1E-45 362.4 18.4 249 630-931 4-260 (337)
75 3poz_A Epidermal growth factor 100.0 8.5E-41 2.9E-45 366.9 14.4 259 630-938 14-278 (327)
76 2pmi_A Negative RE, cyclin-dep 100.0 3.4E-40 1.2E-44 360.4 18.6 286 629-931 3-293 (317)
77 3tt0_A Basic fibroblast growth 100.0 3.8E-40 1.3E-44 369.7 19.4 276 630-945 68-359 (382)
78 2ivs_A Proto-oncogene tyrosine 100.0 3.8E-40 1.3E-44 360.2 19.0 270 630-939 22-312 (314)
79 3qup_A Tyrosine-protein kinase 100.0 1.4E-40 4.8E-45 365.0 15.3 272 629-939 21-299 (323)
80 2y0a_A Death-associated protei 100.0 9.1E-40 3.1E-44 358.1 20.9 252 630-931 10-271 (326)
81 3brb_A Proto-oncogene tyrosine 100.0 5.6E-40 1.9E-44 358.5 19.1 275 629-942 32-312 (313)
82 1kob_A Twitchin; kinase, intra 100.0 8.4E-40 2.9E-44 365.1 20.7 253 630-931 50-304 (387)
83 4hcu_A Tyrosine-protein kinase 100.0 3.3E-40 1.1E-44 351.9 16.5 258 630-939 9-267 (269)
84 2izr_A Casein kinase I isoform 100.0 4.1E-40 1.4E-44 362.2 17.8 265 630-940 8-283 (330)
85 1luf_A Muscle-specific tyrosin 100.0 2E-40 6.7E-45 367.4 15.2 274 629-942 45-339 (343)
86 3o0g_A Cell division protein k 100.0 5.3E-40 1.8E-44 354.8 18.2 275 631-931 2-282 (292)
87 1csn_A Casein kinase-1; phosph 100.0 7.1E-40 2.4E-44 355.2 19.3 266 630-942 9-287 (298)
88 3c0i_A Peripheral plasma membr 100.0 2.1E-40 7.3E-45 366.9 15.5 256 630-931 23-286 (351)
89 4f0f_A Serine/threonine-protei 100.0 7.2E-40 2.5E-44 352.9 18.7 254 630-936 18-287 (287)
90 3sxs_A Cytoplasmic tyrosine-pr 100.0 2.8E-40 9.6E-45 352.3 15.0 258 630-939 7-265 (268)
91 1t46_A HOMO sapiens V-KIT hard 100.0 8.1E-40 2.8E-44 357.4 19.0 273 630-941 22-310 (313)
92 1k9a_A Carboxyl-terminal SRC k 100.0 8.3E-40 2.8E-44 374.4 19.9 254 630-939 192-446 (450)
93 3soa_A Calcium/calmodulin-depe 100.0 9.3E-40 3.2E-44 370.9 20.0 254 629-931 9-267 (444)
94 3c1x_A Hepatocyte growth facto 100.0 3.5E-40 1.2E-44 367.2 16.2 267 632-946 90-363 (373)
95 1rjb_A FL cytokine receptor; k 100.0 4.6E-40 1.6E-44 364.4 17.1 277 629-944 43-340 (344)
96 2eva_A TAK1 kinase - TAB1 chim 100.0 6.9E-40 2.4E-44 356.1 18.2 260 631-943 8-268 (307)
97 2zv2_A Calcium/calmodulin-depe 100.0 1.6E-39 5.4E-44 352.2 20.9 252 630-931 12-292 (298)
98 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-39 7.7E-44 370.3 23.1 359 21-534 35-393 (457)
99 2bdw_A Hypothetical protein K1 100.0 9.3E-40 3.2E-44 362.7 19.3 254 629-932 27-285 (362)
100 3kex_A Receptor tyrosine-prote 100.0 1.7E-40 5.8E-45 364.3 13.0 258 631-938 13-276 (325)
101 3h4j_B AMPK kdaid, SNF1-like p 100.0 4.7E-40 1.6E-44 360.0 16.4 247 630-931 8-258 (336)
102 3g2f_A Bone morphogenetic prot 100.0 3.4E-40 1.2E-44 364.3 15.5 290 630-946 12-326 (336)
103 3niz_A Rhodanese family protei 100.0 1.2E-39 4.1E-44 354.8 19.3 277 628-931 18-300 (311)
104 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.5E-40 8.5E-45 365.1 13.5 250 629-931 21-280 (353)
105 4fr4_A YANK1, serine/threonine 100.0 1.7E-39 5.6E-44 361.2 20.1 251 630-931 14-271 (384)
106 1opk_A P150, C-ABL, proto-onco 100.0 4.1E-40 1.4E-44 381.1 15.9 258 630-937 219-477 (495)
107 2xir_A Vascular endothelial gr 100.0 1E-39 3.5E-44 357.2 18.0 282 622-941 18-313 (316)
108 3mdy_A Bone morphogenetic prot 100.0 7.4E-39 2.5E-43 353.8 24.8 279 624-940 30-333 (337)
109 1mp8_A Focal adhesion kinase 1 100.0 6.4E-40 2.2E-44 352.0 15.6 259 630-939 14-277 (281)
110 2pvf_A Fibroblast growth facto 100.0 1.5E-39 5.2E-44 358.3 18.9 276 630-945 34-325 (334)
111 3g33_A Cell division protein k 100.0 8.4E-40 2.9E-44 356.2 16.6 282 629-931 7-296 (308)
112 3ttj_A Mitogen-activated prote 100.0 2.8E-39 9.7E-44 370.2 21.8 283 629-931 60-355 (464)
113 3ork_A Serine/threonine protei 100.0 2.6E-40 9E-45 360.5 12.6 266 630-938 11-281 (311)
114 2buj_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 361.4 13.2 274 630-943 28-311 (317)
115 4hgt_A Casein kinase I isoform 100.0 1.8E-39 6E-44 351.7 18.8 268 628-941 6-283 (296)
116 3lxl_A Tyrosine-protein kinase 100.0 2.5E-40 8.5E-45 363.6 12.3 281 630-942 22-307 (327)
117 4dc2_A Protein kinase C IOTA t 100.0 6.7E-40 2.3E-44 365.5 15.7 250 630-926 51-307 (396)
118 2w4o_A Calcium/calmodulin-depe 100.0 1.1E-39 3.6E-44 360.8 17.2 252 629-931 51-305 (349)
119 3rp9_A Mitogen-activated prote 100.0 1.4E-39 4.8E-44 374.7 18.8 201 630-844 52-280 (458)
120 3qd2_B Eukaryotic translation 100.0 2.4E-39 8.2E-44 357.0 19.9 258 630-931 5-325 (332)
121 3f66_A Hepatocyte growth facto 100.0 1.4E-39 4.7E-44 352.8 17.5 266 631-944 25-297 (298)
122 3pls_A Macrophage-stimulating 100.0 4.4E-39 1.5E-43 349.0 21.3 268 632-946 22-295 (298)
123 2yex_A Serine/threonine-protei 100.0 2.7E-39 9.2E-44 346.4 19.4 254 630-931 6-261 (276)
124 3lzb_A Epidermal growth factor 100.0 5.3E-40 1.8E-44 360.2 14.1 259 630-938 14-278 (327)
125 3kfa_A Tyrosine-protein kinase 100.0 7.3E-40 2.5E-44 353.1 14.8 262 629-940 11-273 (288)
126 4eut_A Serine/threonine-protei 100.0 2E-39 6.9E-44 365.5 19.0 288 630-939 8-310 (396)
127 4aw2_A Serine/threonine-protei 100.0 3.9E-40 1.3E-44 372.3 13.2 260 626-931 69-338 (437)
128 3n9x_A Phosphotransferase; mal 100.0 2.7E-39 9.1E-44 368.4 20.1 207 629-849 24-253 (432)
129 2v62_A Serine/threonine-protei 100.0 8.4E-40 2.9E-44 361.8 15.4 270 630-939 36-329 (345)
130 2x4f_A Myosin light chain kina 100.0 2.5E-39 8.5E-44 360.6 19.3 252 636-936 94-349 (373)
131 3oz6_A Mitogen-activated prote 100.0 1.6E-39 5.6E-44 365.7 18.0 206 628-851 6-234 (388)
132 3gen_A Tyrosine-protein kinase 100.0 1.3E-39 4.4E-44 350.2 16.3 259 629-939 22-281 (283)
133 2i1m_A Macrophage colony-stimu 100.0 8E-40 2.8E-44 360.7 15.1 275 627-940 42-328 (333)
134 1xjd_A Protein kinase C, theta 100.0 6.4E-40 2.2E-44 360.3 13.8 250 628-930 14-268 (345)
135 3gni_B Strad alpha; kinase fol 100.0 1.8E-39 6E-44 365.8 17.7 287 629-932 23-334 (389)
136 2wqm_A Serine/threonine-protei 100.0 2.6E-39 9E-44 352.7 18.4 269 629-942 30-301 (310)
137 4fvq_A Tyrosine-protein kinase 100.0 4.5E-40 1.5E-44 355.0 12.1 255 630-940 7-277 (289)
138 3uzp_A CKI-delta, CKID, casein 100.0 3.9E-39 1.3E-43 349.0 19.5 267 630-942 8-284 (296)
139 3v8s_A RHO-associated protein 100.0 5.3E-40 1.8E-44 368.5 12.9 257 626-931 64-329 (410)
140 1b6c_B TGF-B superfamily recep 100.0 1.6E-38 5.5E-43 351.9 24.6 279 620-939 31-337 (342)
141 3lxp_A Non-receptor tyrosine-p 100.0 5E-40 1.7E-44 359.3 12.3 272 633-944 33-316 (318)
142 3dtc_A Mitogen-activated prote 100.0 1.4E-39 4.9E-44 347.5 15.5 254 630-936 6-271 (271)
143 1fot_A TPK1 delta, CAMP-depend 100.0 2.2E-39 7.6E-44 352.6 17.3 246 630-931 5-258 (318)
144 4e5w_A Tyrosine-protein kinase 100.0 1.6E-39 5.4E-44 353.2 16.0 271 631-937 21-301 (302)
145 1ob3_A PFPK5, cell division co 100.0 2.1E-39 7.1E-44 349.3 16.7 273 631-931 2-280 (288)
146 1qcf_A Haematopoetic cell kina 100.0 6.3E-40 2.2E-44 376.1 13.5 259 629-939 186-445 (454)
147 3a8x_A Protein kinase C IOTA t 100.0 2.4E-39 8.3E-44 356.6 17.5 249 630-926 8-264 (345)
148 1nxk_A MAP kinase-activated pr 100.0 5.7E-39 1.9E-43 361.3 20.8 256 630-932 60-322 (400)
149 3kmu_A ILK, integrin-linked ki 100.0 2.3E-39 8E-44 345.9 16.9 255 630-938 9-270 (271)
150 3llt_A Serine/threonine kinase 100.0 3.3E-39 1.1E-43 359.8 18.5 211 618-851 22-262 (360)
151 3qyz_A Mitogen-activated prote 100.0 2E-39 6.7E-44 361.7 16.5 287 628-931 24-313 (364)
152 3f3z_A Calcium/calmodulin-depe 100.0 4.1E-39 1.4E-43 345.1 18.3 252 629-931 7-261 (277)
153 1mqb_A Ephrin type-A receptor 100.0 3.3E-39 1.1E-43 355.0 17.8 264 631-943 44-314 (333)
154 1p4o_A Insulin-like growth fac 100.0 3.7E-40 1.3E-44 361.6 10.2 273 625-937 19-298 (322)
155 4agu_A Cyclin-dependent kinase 100.0 2.9E-39 1E-43 352.6 17.1 275 631-931 3-284 (311)
156 2w1i_A JAK2; chromosomal rearr 100.0 3.9E-39 1.3E-43 353.7 18.1 276 630-941 40-325 (326)
157 1rdq_E PKA C-alpha, CAMP-depen 100.0 2.9E-39 1E-43 356.4 16.8 246 630-931 40-293 (350)
158 3hko_A Calcium/calmodulin-depe 100.0 3.4E-39 1.2E-43 357.7 17.4 270 625-931 20-330 (345)
159 3cc6_A Protein tyrosine kinase 100.0 2.8E-39 9.6E-44 347.1 16.1 260 630-940 11-275 (281)
160 2i0e_A Protein kinase C-beta I 100.0 2.6E-39 9E-44 356.6 15.9 250 629-931 18-276 (353)
161 1t4h_A Serine/threonine-protei 100.0 6.8E-39 2.3E-43 345.8 18.8 251 632-931 27-282 (290)
162 3p1a_A MYT1 kinase, membrane-a 100.0 3.5E-39 1.2E-43 351.3 16.6 245 631-931 57-304 (311)
163 2a2a_A Death-associated protei 100.0 1E-38 3.5E-43 349.6 20.3 252 630-931 11-272 (321)
164 3uc3_A Serine/threonine-protei 100.0 3.4E-39 1.1E-43 358.4 16.6 255 629-932 18-275 (361)
165 1qpc_A LCK kinase; alpha beta 100.0 5.9E-39 2E-43 344.3 17.9 262 630-943 12-274 (279)
166 1cm8_A Phosphorylated MAP kina 100.0 4.7E-39 1.6E-43 358.0 17.7 280 629-931 23-307 (367)
167 3kk8_A Calcium/calmodulin depe 100.0 1E-38 3.4E-43 343.5 19.3 252 630-931 5-261 (284)
168 2y94_A 5'-AMP-activated protei 100.0 6.5E-39 2.2E-43 366.1 18.7 248 630-931 15-266 (476)
169 3dls_A PAS domain-containing s 100.0 3.4E-39 1.1E-43 354.6 15.7 244 629-932 22-275 (335)
170 2h34_A Serine/threonine-protei 100.0 4.9E-39 1.7E-43 349.9 16.6 267 629-944 32-302 (309)
171 2eue_A Carbon catabolite derep 100.0 4.4E-39 1.5E-43 344.4 15.9 246 631-931 13-262 (275)
172 3bz5_A Internalin-J, INLJ; leu 100.0 8.6E-38 2.9E-42 357.2 27.6 354 4-464 42-395 (457)
173 1u59_A Tyrosine-protein kinase 100.0 1.2E-38 4.2E-43 343.1 19.4 264 631-944 9-278 (287)
174 3fdn_A Serine/threonine-protei 100.0 5.6E-39 1.9E-43 344.3 16.7 248 630-932 8-258 (279)
175 2yfx_A Tyrosine-protein kinase 100.0 4.9E-39 1.7E-43 353.2 16.6 267 630-939 29-305 (327)
176 3nsz_A CK II alpha, casein kin 100.0 9.9E-39 3.4E-43 351.5 19.0 277 630-931 35-319 (330)
177 3i6u_A CDS1, serine/threonine- 100.0 9.7E-39 3.3E-43 362.0 19.4 254 628-931 132-399 (419)
178 3t9t_A Tyrosine-protein kinase 100.0 4.8E-39 1.6E-43 342.6 15.6 258 630-939 7-265 (267)
179 3gxj_A TGF-beta receptor type- 100.0 1.4E-40 4.8E-45 361.7 3.8 268 630-938 2-297 (303)
180 1byg_A CSK, protein (C-termina 100.0 3.9E-39 1.3E-43 345.4 14.8 254 630-939 20-274 (278)
181 3e7e_A HBUB1, BUB1A, mitotic c 100.0 3.1E-39 1E-43 360.5 14.5 261 629-942 63-343 (365)
182 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.6E-39 5.5E-44 372.3 12.1 260 629-940 182-442 (452)
183 2ac3_A MAP kinase-interacting 100.0 8.6E-39 2.9E-43 349.7 17.4 269 630-931 11-295 (316)
184 3cok_A Serine/threonine-protei 100.0 5.9E-39 2E-43 344.0 15.6 250 630-931 10-262 (278)
185 2fst_X Mitogen-activated prote 100.0 5.2E-39 1.8E-43 357.1 15.7 280 629-931 27-311 (367)
186 3is5_A Calcium-dependent prote 100.0 3.7E-39 1.3E-43 346.6 14.0 254 630-931 21-278 (285)
187 1xbb_A Tyrosine-protein kinase 100.0 5.5E-39 1.9E-43 346.7 15.3 263 629-942 14-283 (291)
188 3lm5_A Serine/threonine-protei 100.0 1.3E-38 4.6E-43 349.3 18.6 266 618-931 15-287 (327)
189 2vd5_A DMPK protein; serine/th 100.0 2.1E-39 7.2E-44 363.9 12.3 257 628-931 58-327 (412)
190 3ll6_A Cyclin G-associated kin 100.0 9.1E-39 3.1E-43 353.1 17.1 267 629-941 26-311 (337)
191 3kn6_A Ribosomal protein S6 ki 100.0 6.4E-39 2.2E-43 351.0 15.6 249 636-931 16-270 (325)
192 3dbq_A Dual specificity protei 100.0 6.6E-39 2.3E-43 354.3 15.8 252 630-932 8-274 (343)
193 3a62_A Ribosomal protein S6 ki 100.0 8.2E-39 2.8E-43 350.7 16.2 249 630-931 16-276 (327)
194 2acx_A G protein-coupled recep 100.0 1.2E-38 4.1E-43 368.0 18.4 254 630-931 183-444 (576)
195 3mtl_A Cell division protein k 100.0 2.6E-39 9E-44 354.5 12.1 275 631-931 2-281 (324)
196 1u5q_A Serine/threonine protei 100.0 8.5E-39 2.9E-43 353.0 16.1 246 631-931 54-305 (348)
197 2a19_B Interferon-induced, dou 100.0 3.8E-39 1.3E-43 346.8 12.8 257 629-940 9-276 (284)
198 1o6v_A Internalin A; bacterial 100.0 3.3E-37 1.1E-41 355.7 29.6 192 25-234 43-234 (466)
199 2zmd_A Dual specificity protei 100.0 1.2E-38 4.1E-43 357.6 17.1 251 631-932 56-321 (390)
200 2r5t_A Serine/threonine-protei 100.0 3.5E-39 1.2E-43 358.1 12.6 250 630-932 37-290 (373)
201 2xrw_A Mitogen-activated prote 100.0 5E-38 1.7E-42 350.9 22.0 282 630-932 24-319 (371)
202 2jii_A Serine/threonine-protei 100.0 5.1E-39 1.7E-43 356.8 13.8 270 630-942 41-340 (352)
203 3mi9_A Cell division protein k 100.0 2.5E-38 8.4E-43 351.4 19.3 285 630-931 16-311 (351)
204 3gbz_A Kinase, CMGC CDK; ssgci 100.0 6.4E-39 2.2E-43 352.2 14.4 277 628-931 31-318 (329)
205 4ejn_A RAC-alpha serine/threon 100.0 3.8E-39 1.3E-43 369.3 13.1 249 630-931 147-404 (446)
206 3sv0_A Casein kinase I-like; t 100.0 2.7E-38 9.2E-43 361.7 19.6 264 630-940 6-280 (483)
207 2w5a_A Serine/threonine-protei 100.0 5E-39 1.7E-43 344.8 12.8 258 630-933 5-269 (279)
208 2clq_A Mitogen-activated prote 100.0 2.3E-38 8E-43 342.7 17.9 253 632-931 23-278 (295)
209 2ozo_A Tyrosine-protein kinase 100.0 2E-38 6.8E-43 375.6 18.6 260 633-942 337-602 (613)
210 2qr7_A Ribosomal protein S6 ki 100.0 1.2E-38 4E-43 350.7 15.5 253 629-931 20-277 (342)
211 3c4z_A Rhodopsin kinase; Ser/T 100.0 2.8E-38 9.4E-43 364.6 19.3 252 630-926 184-438 (543)
212 4aaa_A Cyclin-dependent kinase 100.0 1.1E-38 3.9E-43 350.9 15.3 278 630-931 24-306 (331)
213 3bhy_A Death-associated protei 100.0 3.4E-38 1.2E-42 339.1 18.7 259 631-939 5-275 (283)
214 1fvr_A Tyrosine-protein kinase 100.0 1.1E-38 3.9E-43 350.3 15.3 267 631-940 25-302 (327)
215 3a7i_A MST3 kinase, serine/thr 100.0 4.2E-38 1.4E-42 341.9 19.4 250 630-932 21-271 (303)
216 2b9h_A MAP kinase FUS3, mitoge 100.0 2.6E-38 8.8E-43 351.8 17.8 287 629-931 9-305 (353)
217 2rku_A Serine/threonine-protei 100.0 2E-38 6.7E-43 342.9 16.4 250 630-932 14-266 (294)
218 3pg1_A Mitogen-activated prote 100.0 1.6E-38 5.6E-43 354.5 15.8 280 623-931 14-316 (362)
219 2jam_A Calcium/calmodulin-depe 100.0 2.5E-38 8.6E-43 343.8 16.7 251 630-931 8-261 (304)
220 1ua2_A CAK, cell division prot 100.0 2.3E-38 7.8E-43 350.5 16.6 280 628-932 7-292 (346)
221 2owb_A Serine/threonine-protei 100.0 2.1E-38 7E-43 349.1 16.1 251 629-932 39-292 (335)
222 2vgo_A Serine/threonine-protei 100.0 3.1E-38 1.1E-42 339.5 16.8 247 630-931 13-262 (284)
223 3eb0_A Putative uncharacterize 100.0 2.2E-38 7.7E-43 355.6 16.2 290 628-938 4-330 (383)
224 2wtk_C Serine/threonine-protei 100.0 6.3E-38 2.1E-42 341.1 19.3 255 630-932 4-264 (305)
225 2y7j_A Phosphorylase B kinase 100.0 7E-38 2.4E-42 348.5 20.0 258 624-931 87-359 (365)
226 1o6v_A Internalin A; bacterial 100.0 4.9E-37 1.7E-41 354.3 27.5 347 49-529 43-389 (466)
227 2x7f_A TRAF2 and NCK-interacti 100.0 1.3E-38 4.4E-43 350.0 13.5 270 617-931 10-286 (326)
228 3byv_A Rhoptry kinase; malaria 100.0 2.2E-39 7.5E-44 363.0 7.4 260 630-939 72-369 (377)
229 4fl3_A Tyrosine-protein kinase 100.0 3.3E-38 1.1E-42 374.3 17.3 252 637-939 375-632 (635)
230 2h8h_A Proto-oncogene tyrosine 100.0 8E-39 2.7E-43 373.7 11.5 259 629-939 265-524 (535)
231 2id5_A Lingo-1, leucine rich r 100.0 2E-37 6.9E-42 359.3 23.1 346 79-554 14-359 (477)
232 2i6l_A Mitogen-activated prote 100.0 7.7E-38 2.6E-42 343.0 18.5 280 630-931 10-305 (320)
233 2j7t_A Serine/threonine-protei 100.0 1.4E-38 4.8E-43 345.7 12.5 254 629-931 17-275 (302)
234 2ycf_A Serine/threonine-protei 100.0 8.7E-38 3E-42 342.5 18.7 253 629-931 8-274 (322)
235 1x8b_A WEE1HU, WEE1-like prote 100.0 4.2E-38 1.4E-42 339.6 15.6 247 630-931 10-279 (289)
236 2r3i_A Cell division protein k 100.0 6.5E-38 2.2E-42 339.9 17.1 276 631-931 3-283 (299)
237 3kvw_A DYRK2, dual specificity 100.0 1.3E-37 4.4E-42 353.7 20.3 199 630-851 96-302 (429)
238 3mwu_A Calmodulin-domain prote 100.0 6.5E-38 2.2E-42 363.2 18.0 253 629-932 20-277 (486)
239 3fme_A Dual specificity mitoge 100.0 3.1E-38 1.1E-42 340.8 14.3 255 630-931 6-266 (290)
240 3com_A Serine/threonine-protei 100.0 9.5E-38 3.3E-42 341.1 18.3 252 629-931 27-278 (314)
241 3eqc_A Dual specificity mitoge 100.0 3E-38 1E-42 352.0 14.5 200 630-851 32-233 (360)
242 4exu_A Mitogen-activated prote 100.0 6.9E-38 2.4E-42 349.8 17.3 278 629-931 40-323 (371)
243 2h6d_A 5'-AMP-activated protei 100.0 6.1E-38 2.1E-42 335.8 15.6 248 630-931 10-261 (276)
244 3lij_A Calcium/calmodulin depe 100.0 1E-37 3.5E-42 362.1 18.8 256 630-936 36-298 (494)
245 3q5i_A Protein kinase; CDPK, m 100.0 1E-37 3.5E-42 363.0 18.7 252 629-931 34-301 (504)
246 2vwi_A Serine/threonine-protei 100.0 2E-38 6.9E-43 344.6 11.6 269 629-931 13-287 (303)
247 3nyv_A Calmodulin-domain prote 100.0 5E-38 1.7E-42 364.4 15.5 251 630-931 25-281 (484)
248 3e3p_A Protein kinase, putativ 100.0 1.4E-37 4.6E-42 347.0 18.0 291 624-931 16-314 (360)
249 1u46_A ACK-1, activated CDC42 100.0 3.2E-38 1.1E-42 340.9 12.4 261 630-939 17-285 (291)
250 1phk_A Phosphorylase kinase; g 100.0 2.3E-37 7.9E-42 335.4 19.1 253 629-931 15-283 (298)
251 3an0_A Dual specificity mitoge 100.0 6.5E-38 2.2E-42 346.4 14.7 256 629-931 49-310 (340)
252 3q60_A ROP5B; pseudokinase, tr 100.0 1.6E-38 5.4E-43 355.4 9.2 265 630-937 61-360 (371)
253 3pfq_A PKC-B, PKC-beta, protei 100.0 1.4E-37 4.7E-42 371.7 17.9 245 629-926 339-587 (674)
254 2pml_X PFPK7, Ser/Thr protein 100.0 1.4E-37 4.9E-42 345.0 16.7 271 630-931 30-322 (348)
255 1blx_A Cyclin-dependent kinase 100.0 1.4E-37 4.9E-42 341.7 16.3 282 629-931 9-296 (326)
256 1wak_A Serine/threonine-protei 100.0 2.6E-37 8.8E-42 349.8 18.9 284 630-931 36-391 (397)
257 4e7w_A Glycogen synthase kinas 100.0 1.3E-37 4.5E-42 349.9 15.5 277 630-931 39-321 (394)
258 1j1b_A Glycogen synthase kinas 100.0 1.4E-37 4.8E-42 352.6 15.6 278 630-931 53-336 (420)
259 3coi_A Mitogen-activated prote 100.0 2.7E-37 9.4E-42 343.1 17.3 277 630-931 23-305 (353)
260 1vzo_A Ribosomal protein S6 ki 100.0 7.5E-38 2.6E-42 347.1 12.6 255 630-932 53-322 (355)
261 1z57_A Dual specificity protei 100.0 5.4E-37 1.9E-41 339.2 18.2 278 630-931 13-328 (339)
262 2j0j_A Focal adhesion kinase 1 100.0 2.5E-37 8.6E-42 368.2 16.6 260 629-939 388-652 (656)
263 3rgf_A Cyclin-dependent kinase 100.0 4E-37 1.4E-41 348.2 17.1 211 631-851 20-239 (405)
264 1zy4_A Serine/threonine-protei 100.0 3.5E-37 1.2E-41 334.8 16.0 258 630-931 5-283 (303)
265 3fhr_A MAP kinase-activated pr 100.0 5.9E-37 2E-41 337.3 17.7 258 629-931 26-287 (336)
266 2id5_A Lingo-1, leucine rich r 100.0 4.7E-36 1.6E-40 347.8 25.9 319 31-407 14-333 (477)
267 3cek_A Dual specificity protei 100.0 1.6E-37 5.6E-42 338.9 12.7 262 620-932 17-293 (313)
268 2vx3_A Dual specificity tyrosi 100.0 8.1E-37 2.8E-41 342.8 18.6 203 628-851 51-261 (382)
269 2wei_A Calmodulin-domain prote 100.0 5.9E-37 2E-41 330.0 16.2 253 628-931 19-276 (287)
270 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.2E-37 4.1E-42 341.2 10.8 264 627-942 29-306 (319)
271 1q8y_A SR protein kinase; tran 100.0 9.1E-37 3.1E-41 342.1 15.8 284 630-931 18-333 (373)
272 2eu9_A Dual specificity protei 100.0 2.3E-36 7.8E-41 336.5 18.0 278 630-931 18-333 (355)
273 2iwi_A Serine/threonine-protei 100.0 6.5E-37 2.2E-41 334.1 12.9 246 625-931 25-283 (312)
274 3a99_A Proto-oncogene serine/t 100.0 4.6E-37 1.6E-41 336.0 11.4 243 628-931 40-293 (320)
275 3qa8_A MGC80376 protein; kinas 100.0 1.1E-36 3.8E-41 354.4 14.9 278 630-930 13-296 (676)
276 3aln_A Dual specificity mitoge 100.0 7.4E-37 2.5E-41 336.0 12.5 259 630-931 21-285 (327)
277 2dyl_A Dual specificity mitoge 100.0 2.4E-36 8.3E-41 330.7 14.4 252 630-931 24-283 (318)
278 3o6n_A APL1; leucine-rich repe 100.0 7.1E-35 2.4E-39 328.4 24.1 312 26-506 43-354 (390)
279 2rio_A Serine/threonine-protei 100.0 5.9E-36 2E-40 340.8 14.6 257 631-931 15-295 (434)
280 3uqc_A Probable conserved tran 100.0 1.2E-35 4.1E-40 318.3 15.4 239 630-944 30-271 (286)
281 3oja_B Anopheles plasmodium-re 100.0 1E-34 3.5E-39 345.1 24.4 343 100-564 51-393 (597)
282 2pzi_A Probable serine/threoni 100.0 3.3E-35 1.1E-39 354.1 19.6 247 630-938 79-328 (681)
283 3o6n_A APL1; leucine-rich repe 100.0 1.1E-34 3.8E-39 326.9 21.9 335 99-555 44-378 (390)
284 3dzo_A Rhoptry kinase domain; 100.0 1.5E-35 5.3E-40 335.0 13.7 251 631-931 78-363 (413)
285 3p23_A Serine/threonine-protei 100.0 3.5E-35 1.2E-39 333.1 16.0 250 630-931 23-283 (432)
286 1ogq_A PGIP-2, polygalacturona 100.0 8.2E-35 2.8E-39 316.4 17.8 255 300-556 51-309 (313)
287 3oja_B Anopheles plasmodium-re 100.0 3.8E-34 1.3E-38 340.2 24.6 311 51-506 50-360 (597)
288 3m2w_A MAP kinase-activated pr 100.0 1.6E-34 5.4E-39 312.9 16.4 236 630-931 16-256 (299)
289 4fmz_A Internalin; leucine ric 100.0 9.1E-33 3.1E-37 306.1 24.0 308 23-360 39-346 (347)
290 2ft3_A Biglycan; proteoglycan, 100.0 9.1E-33 3.1E-37 303.7 23.8 128 28-161 33-160 (332)
291 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-34 2.2E-38 309.4 14.0 249 4-255 50-302 (313)
292 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-32 3.8E-37 303.0 22.4 288 5-358 34-331 (332)
293 1xku_A Decorin; proteoglycan, 100.0 5E-32 1.7E-36 297.7 27.1 297 27-478 30-330 (330)
294 2vuw_A Serine/threonine-protei 100.0 2E-34 6.9E-39 317.7 7.9 247 630-930 19-329 (336)
295 1xku_A Decorin; proteoglycan, 100.0 1.8E-32 6.2E-37 301.2 23.3 289 5-358 32-330 (330)
296 4fmz_A Internalin; leucine ric 100.0 4.8E-32 1.6E-36 300.3 24.0 303 4-336 44-346 (347)
297 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-35 1.6E-39 338.3 -16.2 390 52-529 3-441 (461)
298 1z7x_W Ribonuclease inhibitor; 100.0 3E-35 1E-39 339.8 -19.3 398 4-510 3-446 (461)
299 2z80_A TOLL-like receptor 2, v 100.0 2.7E-30 9.4E-35 286.6 16.8 279 29-362 32-316 (353)
300 4fcg_A Uncharacterized protein 100.0 3.4E-29 1.2E-33 273.7 15.7 226 4-235 81-315 (328)
301 2z80_A TOLL-like receptor 2, v 100.0 8.8E-29 3E-33 274.4 17.8 279 48-409 27-316 (353)
302 2z66_A Variable lymphocyte rec 100.0 8.8E-29 3E-33 268.7 16.8 226 8-238 11-240 (306)
303 2z66_A Variable lymphocyte rec 100.0 7.5E-29 2.6E-33 269.2 13.1 201 30-235 9-213 (306)
304 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-28 5E-33 263.9 15.1 225 7-235 14-239 (285)
305 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 4.2E-32 274.5 22.0 245 7-257 57-303 (452)
306 3zyj_A Leucine-rich repeat-con 100.0 1.1E-27 3.9E-32 273.7 21.1 245 7-257 46-292 (440)
307 3zyj_A Leucine-rich repeat-con 100.0 3E-27 1E-31 270.3 23.4 230 299-530 64-294 (440)
308 3ogk_B Coronatine-insensitive 100.0 1E-30 3.4E-35 312.1 -5.9 432 22-501 67-548 (592)
309 3zyi_A Leucine-rich repeat-con 100.0 3E-27 1E-31 271.3 22.8 249 277-531 57-306 (452)
310 3g06_A SSPH2 (leucine-rich rep 100.0 6.3E-27 2.2E-31 274.8 25.6 108 394-515 201-308 (622)
311 1wwl_A Monocyte differentiatio 99.9 2.2E-29 7.4E-34 273.8 2.5 156 25-185 40-214 (312)
312 3o53_A Protein LRIM1, AGAP0063 99.9 6.8E-29 2.3E-33 270.5 6.1 268 6-365 12-281 (317)
313 4fcg_A Uncharacterized protein 99.9 3E-27 1E-31 258.2 18.9 235 274-529 81-315 (328)
314 3g06_A SSPH2 (leucine-rich rep 99.9 9.8E-27 3.4E-31 273.2 24.5 134 29-185 41-174 (622)
315 3ogk_B Coronatine-insensitive 99.9 1.8E-30 6.2E-35 309.9 -7.8 380 98-529 110-527 (592)
316 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-27 1.7E-31 251.9 18.3 227 277-532 14-242 (285)
317 1wwl_A Monocyte differentiatio 99.9 3.1E-28 1.1E-32 264.7 8.0 249 271-530 40-311 (312)
318 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-28 4.7E-33 268.1 4.8 216 4-234 34-250 (317)
319 4azs_A Methyltransferase WBDD; 99.9 2.8E-28 9.7E-33 284.6 3.8 186 638-847 241-437 (569)
320 2z62_A TOLL-like receptor 4, v 99.9 5.1E-26 1.7E-30 242.9 19.8 227 8-239 11-242 (276)
321 3oja_A Leucine-rich immune mol 99.9 1.5E-26 5E-31 266.8 11.2 215 300-528 35-250 (487)
322 3oja_A Leucine-rich immune mol 99.9 6.2E-26 2.1E-30 261.5 13.8 217 25-255 31-248 (487)
323 1p9a_G Platelet glycoprotein I 99.9 1.4E-24 4.8E-29 232.5 18.8 205 23-235 5-209 (290)
324 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.4E-29 232.8 17.5 206 4-211 28-238 (276)
325 2o6q_A Variable lymphocyte rec 99.9 2.9E-24 1E-28 228.1 21.0 205 29-237 17-221 (270)
326 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 230.1 18.1 204 5-212 17-220 (270)
327 2p1m_B Transport inhibitor res 99.9 4.3E-28 1.5E-32 289.5 -12.5 443 8-527 47-543 (594)
328 3rfs_A Internalin B, repeat mo 99.9 1.2E-24 4.1E-29 231.3 13.6 205 23-239 36-240 (272)
329 2p1m_B Transport inhibitor res 99.9 1.6E-27 5.6E-32 284.5 -10.5 214 299-528 289-519 (594)
330 3rfs_A Internalin B, repeat mo 99.9 8.9E-25 3.1E-29 232.3 11.2 204 26-236 17-220 (272)
331 3en9_A Glycoprotease, O-sialog 99.9 1.1E-24 3.6E-29 253.1 8.9 187 633-849 338-539 (540)
332 1p9a_G Platelet glycoprotein I 99.9 2.5E-23 8.5E-28 222.8 18.7 204 47-257 5-208 (290)
333 2xwt_C Thyrotropin receptor; s 99.9 8.7E-24 3E-28 220.2 14.7 203 19-231 25-236 (239)
334 2xwt_C Thyrotropin receptor; s 99.9 1.9E-23 6.3E-28 217.7 14.4 212 33-254 16-236 (239)
335 4glp_A Monocyte differentiatio 99.9 3.4E-24 1.2E-28 232.6 9.1 200 53-257 92-307 (310)
336 3goz_A Leucine-rich repeat-con 99.9 7.7E-25 2.6E-29 243.2 1.9 263 32-364 2-301 (362)
337 3goz_A Leucine-rich repeat-con 99.9 6.1E-25 2.1E-29 244.1 -1.0 267 8-296 2-306 (362)
338 3m19_A Variable lymphocyte rec 99.9 1.5E-22 5.3E-27 212.3 17.2 177 30-210 16-192 (251)
339 4glp_A Monocyte differentiatio 99.9 7.1E-23 2.4E-27 222.2 14.0 201 323-529 91-308 (310)
340 1h6u_A Internalin H; cell adhe 99.9 9.2E-23 3.1E-27 220.7 14.3 198 24-238 37-234 (308)
341 3m19_A Variable lymphocyte rec 99.9 3.1E-22 1E-26 210.0 17.5 178 7-187 17-194 (251)
342 1zar_A RIO2 kinase; serine kin 99.9 8E-23 2.7E-27 217.2 11.5 152 625-822 84-253 (282)
343 4ay9_X Follicle-stimulating ho 99.9 5.2E-22 1.8E-26 219.2 18.0 205 9-218 14-223 (350)
344 2ast_B S-phase kinase-associat 99.9 6.7E-24 2.3E-28 233.7 1.9 198 30-232 49-258 (336)
345 1h6u_A Internalin H; cell adhe 99.9 4.7E-22 1.6E-26 215.1 14.9 191 4-211 41-231 (308)
346 4ay9_X Follicle-stimulating ho 99.9 1.3E-21 4.6E-26 215.9 18.5 203 31-238 12-219 (350)
347 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 229.5 1.9 254 53-369 48-315 (336)
348 2ca6_A RAN GTPase-activating p 99.9 2.4E-24 8.1E-29 241.9 -6.3 263 19-307 23-338 (386)
349 2ca6_A RAN GTPase-activating p 99.9 7.2E-24 2.5E-28 237.9 -3.4 235 4-238 32-320 (386)
350 2o6s_A Variable lymphocyte rec 99.9 2.5E-21 8.7E-26 196.7 13.2 181 31-222 10-190 (208)
351 2o6s_A Variable lymphocyte rec 99.8 3E-21 1E-25 196.2 12.6 177 7-193 10-186 (208)
352 3cvr_A Invasion plasmid antige 99.8 9.7E-21 3.3E-25 219.4 16.8 189 300-516 60-255 (571)
353 3cvr_A Invasion plasmid antige 99.8 5.5E-21 1.9E-25 221.5 12.0 181 29-238 60-247 (571)
354 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-20 9.6E-25 190.3 12.1 158 373-533 14-171 (220)
355 2v9t_B SLIT homolog 2 protein 99.8 6.2E-20 2.1E-24 187.7 14.2 153 31-186 14-166 (220)
356 2v9t_B SLIT homolog 2 protein 99.8 8.3E-20 2.9E-24 186.8 14.8 151 8-161 15-165 (220)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-20 2.4E-24 187.3 14.0 157 30-189 13-170 (220)
358 2xot_A Amphoterin-induced prot 99.8 4.8E-20 1.6E-24 204.2 12.8 175 31-210 21-202 (361)
359 1h6t_A Internalin B; cell adhe 99.8 3.8E-20 1.3E-24 198.2 11.0 148 26-185 44-191 (291)
360 1h6t_A Internalin B; cell adhe 99.8 2.5E-20 8.6E-25 199.6 9.2 195 26-237 22-216 (291)
361 2xot_A Amphoterin-induced prot 99.8 8.5E-20 2.9E-24 202.3 13.2 175 8-185 22-202 (361)
362 1m9s_A Internalin B; cell inva 99.8 7.6E-20 2.6E-24 214.5 11.0 194 27-237 20-213 (605)
363 3e6j_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 183.2 13.9 156 29-188 20-175 (229)
364 3e6j_A Variable lymphocyte rec 99.8 6.6E-19 2.3E-23 181.4 15.5 151 8-162 23-173 (229)
365 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.7E-24 212.4 10.0 192 11-219 28-219 (605)
366 4ezg_A Putative uncharacterize 99.8 2E-19 7E-24 180.7 8.9 153 49-210 41-194 (197)
367 1dce_A Protein (RAB geranylger 99.8 2.7E-21 9.1E-26 225.6 -6.5 192 25-240 346-552 (567)
368 1zth_A RIO1 serine protein kin 99.8 6.8E-19 2.3E-23 184.7 10.2 137 633-796 49-219 (258)
369 1w8a_A SLIT protein; signaling 99.8 1.4E-18 4.9E-23 173.5 12.0 156 397-556 11-167 (192)
370 1xeu_A Internalin C; cellular 99.8 4E-19 1.4E-23 187.0 7.6 170 26-211 17-186 (263)
371 4b8c_D Glucose-repressible alc 99.8 1.2E-19 4.2E-24 218.5 3.7 142 44-189 216-358 (727)
372 4ezg_A Putative uncharacterize 99.8 1.5E-18 5E-23 174.4 9.9 156 23-186 39-195 (197)
373 1xeu_A Internalin C; cellular 99.7 5.9E-19 2E-23 185.8 7.0 171 6-192 21-191 (263)
374 1dce_A Protein (RAB geranylger 99.7 4.7E-20 1.6E-24 215.1 -2.3 187 97-361 346-547 (567)
375 3sb4_A Hypothetical leucine ri 99.7 4.9E-18 1.7E-22 185.6 11.7 305 6-401 4-328 (329)
376 4b8c_D Glucose-repressible alc 99.7 1.1E-18 3.6E-23 210.4 4.9 182 28-215 173-359 (727)
377 1w8a_A SLIT protein; signaling 99.7 2.9E-17 1E-21 164.0 13.6 177 373-555 11-187 (192)
378 2wfh_A SLIT homolog 2 protein 99.7 6.8E-17 2.3E-21 161.2 11.1 131 397-532 13-143 (193)
379 2ell_A Acidic leucine-rich nuc 99.7 3.4E-17 1.2E-21 159.9 8.2 137 27-166 23-164 (168)
380 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5.2E-21 158.6 12.3 127 31-161 13-139 (193)
381 3sb4_A Hypothetical leucine ri 99.7 8.7E-17 3E-21 175.7 11.0 282 5-354 26-328 (329)
382 2ell_A Acidic leucine-rich nuc 99.7 6.5E-17 2.2E-21 157.9 7.4 137 4-143 24-165 (168)
383 2je0_A Acidic leucine-rich nuc 99.7 7.8E-17 2.7E-21 153.8 7.7 129 26-156 15-148 (149)
384 2o6r_A Variable lymphocyte rec 99.6 7.3E-16 2.5E-20 151.8 13.3 133 396-532 9-141 (177)
385 4fdw_A Leucine rich hypothetic 99.6 5.9E-15 2E-19 164.4 20.7 172 28-234 113-284 (401)
386 2o6r_A Variable lymphocyte rec 99.6 7.9E-16 2.7E-20 151.5 12.1 129 30-161 9-137 (177)
387 2je0_A Acidic leucine-rich nuc 99.6 1.2E-16 4.2E-21 152.4 5.6 129 3-133 16-149 (149)
388 4fdw_A Leucine rich hypothetic 99.6 1.5E-14 5.2E-19 161.1 22.6 267 73-406 110-382 (401)
389 4fs7_A Uncharacterized protein 99.6 3.2E-14 1.1E-18 159.4 22.4 137 39-181 58-194 (394)
390 4fs7_A Uncharacterized protein 99.6 7.1E-14 2.4E-18 156.7 24.7 331 19-399 61-393 (394)
391 1a9n_A U2A', U2A'; complex (nu 99.6 8.8E-16 3E-20 151.0 7.9 131 24-160 15-152 (176)
392 4gyi_A RIO2 kinase; protein ki 99.6 3E-15 1E-19 162.1 12.0 141 627-796 91-265 (397)
393 1a9n_A U2A', U2A'; complex (nu 99.6 1E-15 3.6E-20 150.4 7.4 134 46-185 13-153 (176)
394 1ds9_A Outer arm dynein; leuci 99.6 1.4E-17 4.8E-22 167.4 -6.9 133 24-161 14-153 (198)
395 1ds9_A Outer arm dynein; leuci 99.5 8.7E-17 3E-21 161.6 -4.6 137 48-189 14-157 (198)
396 3g39_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 137.5 11.3 107 423-532 13-119 (170)
397 3g39_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 137.3 10.9 106 29-137 10-115 (170)
398 2r9u_A Variable lymphocyte rec 99.5 5.1E-14 1.7E-18 137.6 10.7 105 30-137 14-118 (174)
399 2r9u_A Variable lymphocyte rec 99.5 9.1E-14 3.1E-18 135.8 11.4 106 423-531 16-121 (174)
400 4gt6_A Cell surface protein; l 99.5 5.1E-12 1.7E-16 141.5 25.3 144 5-158 23-170 (394)
401 4gt6_A Cell surface protein; l 99.3 9E-11 3.1E-15 131.3 24.6 334 18-503 52-390 (394)
402 2ifg_A High affinity nerve gro 99.3 3.2E-12 1.1E-16 140.7 10.9 104 31-137 11-116 (347)
403 3un9_A NLR family member X1; l 99.3 2.5E-14 8.6E-19 157.8 -7.3 163 52-214 72-256 (372)
404 3un9_A NLR family member X1; l 99.3 2E-14 6.7E-19 158.6 -8.6 160 28-187 72-254 (372)
405 2ifg_A High affinity nerve gro 99.3 3.2E-12 1.1E-16 140.7 8.3 103 56-161 12-116 (347)
406 3tm0_A Aminoglycoside 3'-phosp 99.2 2.9E-11 9.9E-16 127.2 10.3 148 626-795 9-213 (263)
407 4h09_A Hypothetical leucine ri 99.0 1.4E-08 4.7E-13 113.0 21.5 77 436-514 279-355 (379)
408 4h09_A Hypothetical leucine ri 99.0 2E-08 6.8E-13 111.6 21.9 302 23-370 41-355 (379)
409 1nd4_A Aminoglycoside 3'-phosp 99.0 8.6E-10 2.9E-14 115.8 9.5 139 630-795 19-214 (264)
410 2ra8_A Uncharacterized protein 98.9 1E-10 3.5E-15 127.6 -0.1 84 147-232 251-341 (362)
411 3sg8_A APH(2'')-ID; antibiotic 98.9 6.1E-10 2.1E-14 119.7 4.8 190 636-848 25-287 (304)
412 3dxp_A Putative acyl-COA dehyd 98.9 5.1E-09 1.7E-13 115.5 11.7 145 635-795 42-248 (359)
413 2ra8_A Uncharacterized protein 98.8 4.4E-10 1.5E-14 122.6 -0.6 64 171-234 251-320 (362)
414 1io0_A Tropomodulin; LRR prote 98.5 6.8E-09 2.3E-13 102.1 -2.3 63 99-161 92-164 (185)
415 3r70_A Aminoglycoside phosphot 98.5 5.6E-07 1.9E-11 97.1 12.6 137 632-796 38-238 (320)
416 1io0_A Tropomodulin; LRR prote 98.5 1.7E-08 5.7E-13 99.3 -0.7 89 97-185 62-164 (185)
417 3rw6_A Nuclear RNA export fact 98.4 4.8E-08 1.6E-12 100.7 1.6 80 440-521 167-257 (267)
418 3rw6_A Nuclear RNA export fact 98.4 2E-08 6.7E-13 103.6 -1.6 119 33-154 121-257 (267)
419 3d1u_A Putative fructosamine-3 98.3 1.6E-06 5.4E-11 91.5 10.9 76 635-720 19-97 (288)
420 4gkh_A Aminoglycoside 3'-phosp 98.3 1.8E-06 6.1E-11 90.8 11.1 142 631-795 25-223 (272)
421 3tdw_A Gentamicin resistance p 98.3 4.1E-06 1.4E-10 89.5 12.3 137 636-795 24-224 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 1.8E-05 6.2E-10 86.5 12.4 152 634-796 44-244 (362)
423 3ats_A Putative uncharacterize 98.0 2.2E-05 7.6E-10 86.0 10.9 86 636-723 25-123 (357)
424 3e4g_A ATP synthase subunit S, 97.9 2.3E-06 7.9E-11 81.5 1.1 92 44-135 53-150 (176)
425 2olc_A MTR kinase, methylthior 97.9 2.2E-05 7.7E-10 87.4 8.7 76 636-718 35-120 (397)
426 3e4g_A ATP synthase subunit S, 97.8 2.7E-06 9.1E-11 81.0 -0.2 95 19-113 52-153 (176)
427 2q83_A YTAA protein; 2635576, 97.7 0.00011 3.8E-09 79.9 10.8 153 637-795 38-252 (346)
428 3f7w_A Putative fructosamine-3 97.6 0.00019 6.4E-09 75.9 9.6 78 633-720 17-97 (288)
429 2pyw_A Uncharacterized protein 97.4 5.6E-05 1.9E-09 84.7 4.0 80 764-845 231-313 (420)
430 2ppq_A HSK, HK, homoserine kin 97.3 0.0011 3.9E-08 71.0 12.4 172 619-795 5-217 (322)
431 1pgv_A TMD-1, tropomodulin TMD 97.3 4.2E-05 1.4E-09 74.3 0.0 115 26-160 39-169 (197)
432 3jr1_A Putative fructosamine-3 97.2 0.0015 5.1E-08 69.2 11.8 145 636-791 41-232 (312)
433 1pgv_A TMD-1, tropomodulin TMD 97.2 4.2E-05 1.4E-09 74.2 -0.2 114 72-185 37-170 (197)
434 3dxq_A Choline/ethanolamine ki 97.0 0.0017 5.9E-08 68.8 10.1 72 636-721 23-96 (301)
435 1zyl_A Hypothetical protein YI 97.0 0.0024 8.3E-08 68.6 10.5 172 617-795 7-223 (328)
436 3feg_A Choline/ethanolamine ki 96.9 0.0016 5.4E-08 71.0 8.6 148 636-795 55-254 (379)
437 3rfe_A Platelet glycoprotein I 96.9 0.0014 4.7E-08 59.4 6.7 56 471-528 12-68 (130)
438 2qg7_A Ethanolamine kinase PV0 96.9 0.0033 1.1E-07 70.5 11.0 76 636-721 113-189 (458)
439 1nw1_A Choline kinase (49.2 KD 96.8 0.0025 8.5E-08 71.1 9.3 75 636-721 78-160 (429)
440 3csv_A Aminoglycoside phosphot 96.7 0.0063 2.2E-07 65.5 11.0 32 764-795 182-217 (333)
441 3rfe_A Platelet glycoprotein I 96.7 0.0026 8.7E-08 57.6 6.4 56 447-504 12-68 (130)
442 3c5i_A Choline kinase; choline 96.5 0.0049 1.7E-07 67.5 8.6 75 636-720 38-121 (369)
443 3i1a_A Spectinomycin phosphotr 96.4 0.011 3.8E-07 63.6 10.8 32 764-795 205-236 (339)
444 2yle_A Protein spire homolog 1 96.4 0.0063 2.1E-07 59.2 7.3 103 718-847 33-135 (229)
445 3f2s_A CK, chetk-alpha, cholin 95.8 0.025 8.6E-07 61.7 9.5 149 636-795 57-280 (401)
446 3mes_A Choline kinase; malaria 94.7 0.039 1.3E-06 60.9 6.9 75 636-720 75-157 (424)
447 3g15_A CK, chetk-alpha, cholin 94.0 0.17 5.9E-06 55.6 10.1 30 766-795 245-280 (401)
448 2ks1_B Epidermal growth factor 93.7 0.05 1.7E-06 37.5 3.2 28 579-607 13-40 (44)
449 2l2t_A Receptor tyrosine-prote 93.6 0.11 3.6E-06 35.8 4.5 27 579-605 12-38 (44)
450 2jwa_A Receptor tyrosine-prote 91.0 0.47 1.6E-05 32.6 5.1 17 591-607 24-40 (44)
451 2k1k_A Ephrin type-A receptor 83.2 1.5 5E-05 29.3 3.8 24 581-604 14-37 (38)
452 4ann_A ESSB; membrane protein, 82.5 2.1 7.3E-05 41.5 6.5 84 739-851 77-160 (215)
453 4ano_A ESSB; membrane protein, 78.6 3.2 0.00011 40.4 6.3 83 739-850 81-164 (219)
454 3cxl_A N-chimerin; SH2, RHO-GA 76.1 0.29 9.9E-06 54.8 -2.2 61 635-698 146-214 (463)
455 2lx0_A Membrane fusion protein 71.8 5 0.00017 23.8 3.3 24 581-604 6-29 (32)
456 2l9u_A Receptor tyrosine-prote 69.5 8.9 0.00031 24.2 4.3 28 578-605 7-34 (40)
457 2l8s_A Integrin alpha-1; trans 65.0 15 0.0005 26.5 5.3 31 577-607 10-40 (54)
458 2knc_A Integrin alpha-IIB; tra 58.6 27 0.00091 25.2 5.7 22 577-598 13-34 (54)
459 2lz0_A Uncharacterized protein 57.2 23 0.00078 29.6 6.4 47 38-85 6-52 (100)
460 2klu_A T-cell surface glycopro 56.2 19 0.00064 26.9 4.6 20 583-602 13-32 (70)
461 2k9y_A Ephrin type-A receptor 53.4 9 0.00031 25.9 2.6 8 581-588 17-24 (41)
462 2l2t_A Receptor tyrosine-prote 51.4 26 0.0009 24.1 4.5 31 581-611 10-41 (44)
463 2jwa_A Receptor tyrosine-prote 49.0 26 0.00089 24.1 4.2 21 587-607 23-43 (44)
464 2lz0_A Uncharacterized protein 46.2 50 0.0017 27.4 6.7 48 429-477 6-53 (100)
465 2k1a_A Integrin alpha-IIB; sin 40.2 41 0.0014 22.9 4.1 14 578-591 12-25 (42)
466 2knc_B Integrin beta-3; transm 37.3 24 0.00082 27.9 3.1 7 582-588 16-22 (79)
467 2ks1_B Epidermal growth factor 35.7 24 0.00081 24.3 2.4 26 583-608 13-38 (44)
468 2l34_A TYRO protein tyrosine k 35.1 51 0.0017 21.1 3.7 22 580-601 9-30 (33)
469 1cja_A Protein (actin-fragmin 35.0 2E+02 0.0067 29.8 10.2 143 634-795 72-237 (342)
470 1afo_A Glycophorin A; integral 31.1 85 0.0029 20.7 4.2 7 583-589 19-25 (40)
471 2k9j_B Integrin beta-3; transm 29.1 67 0.0023 22.0 3.8 18 581-598 10-27 (43)
472 1zza_A Stannin, AG8_1; helix, 24.4 1.6E+02 0.0054 22.3 5.3 11 594-604 30-40 (90)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-70 Score=668.88 Aligned_cols=553 Identities=31% Similarity=0.496 Sum_probs=469.9
Q ss_pred CcEEEEEeCCCeeeeecCc--cccCCccCceeecCCCccCcCCCccC-CCCCCCcEEeCCCCccccccCcC---ccCCCC
Q 043900 4 QRVKILNLTSLKLAGSISP--HVGNLSFLKVLLLYNNSFNHGIPSEF-DRLQRLQVLALNNNSIGGEIPAN---ISSCSN 77 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~p~~---~~~l~~ 77 (953)
.+++.|||++|.+.|.+|. .++++++|++|+|++|.+++..|..+ .++++|++|||++|++++..|.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 5789999999999999999 99999999999999999998888766 88999999999999999888877 789999
Q ss_pred CcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceeccc
Q 043900 78 LIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAE 157 (953)
Q Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (953)
|++|+|++|.+++..| +..+++|++|+|++|++++.+|. |+++++|++|+|++|++++.+|..|+.+++|++|+|++
T Consensus 180 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 9999999999986655 38889999999999999977776 99999999999999999988899999999999999999
Q ss_pred ccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcC
Q 043900 158 NWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEV 237 (953)
Q Consensus 158 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (953)
|++++.+|.. .+++|++|++++|++++.+|..++..+++|++|++++|++++.+|..|+++++|++|++++|.+++..
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 9998777765 78889999999999988888888755689999999999998888999999999999999999988665
Q ss_pred CC--CCCCCccceeeecccccCCCCCCccccc-------------------ccccc--cccccEEeccCCcccccCChhh
Q 043900 238 PY--LEKPQRLSVFSITENSLGSRGHSNLNFL-------------------CSLTN--STRLNRLLINANNFGGLLPACI 294 (953)
Q Consensus 238 ~~--l~~~~~L~~l~l~~n~l~~~~~~~~~~l-------------------~~l~~--~~~L~~L~l~~n~~~~~~p~~~ 294 (953)
|. +..+++|+++++++|.+.......+..+ ..+.. ++.|+.|++++|.+.+.+|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 53 7788888888888888763211111111 01111 4567888888888888888887
Q ss_pred hhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eee
Q 043900 295 SNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVF 373 (953)
Q Consensus 295 ~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~ 373 (953)
..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|..|..+++|++|+|++|++++.+|..++++ .++
T Consensus 415 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 415 SNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 777 578888888888888888888888888888888888888888888888888888888888888888877776 467
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCcc---------------
Q 043900 374 NLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSE--------------- 438 (953)
Q Consensus 374 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~--------------- 438 (953)
+|+|++|.+++.+|.+|+.+++|++|+|++|++++.+|..+..+.. ++.|++++|.++|.+|..
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 8888888888888888888888888888888888788877766544 457888888887666643
Q ss_pred -------------------------------------------------------ccCCCccceeeecCCcccccCCCCc
Q 043900 439 -------------------------------------------------------VGNLKNLEVLDVFENKLKGEIPSTL 463 (953)
Q Consensus 439 -------------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~ 463 (953)
|..+++|+.|||++|+++|.+|..|
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 4456789999999999999999999
Q ss_pred cCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCCCCcccccccc
Q 043900 464 GSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEGVFKNATIT 543 (953)
Q Consensus 464 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~ 543 (953)
+++++|+.|+|++|+|+|.+|..|+.+++|++|||++|+++|.+|..+..+++|+.|++++|+|+|.||..+++..+...
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~ 732 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCCCCCCCCCCCCcccccc
Q 043900 544 SVLGNLKLCGGIPEFQLPTCISKE 567 (953)
Q Consensus 544 ~~~~n~~lcg~~~~~~~~~c~~~~ 567 (953)
+|.||+++||.+. ++|....
T Consensus 733 ~~~gN~~Lcg~~l----~~C~~~~ 752 (768)
T 3rgz_A 733 KFLNNPGLCGYPL----PRCDPSN 752 (768)
T ss_dssp GGCSCTEEESTTS----CCCCSCC
T ss_pred HhcCCchhcCCCC----cCCCCCc
Confidence 9999999999765 4676543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-64 Score=620.86 Aligned_cols=540 Identities=32% Similarity=0.474 Sum_probs=399.9
Q ss_pred cCcEEEEEeCCCeeeee---cCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCc--CccCCCC
Q 043900 3 HQRVKILNLTSLKLAGS---ISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPA--NISSCSN 77 (953)
Q Consensus 3 ~~~~~~l~l~~~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~--~~~~l~~ 77 (953)
.++|+.|||+++.+.|. +|+++.+|++|+.++++.|.+.. .|..|+.+++|++|||++|.+++.+|. .++++++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 46899999999999888 77655555555555555555443 444455555555555555555554554 4555555
Q ss_pred CcEEeccCccccccCCcc----------------------------cCCccccceeeccccccccccCCcccCCCcccEE
Q 043900 78 LIQIRLFYNELVGKIPSE----------------------------LGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTL 129 (953)
Q Consensus 78 L~~L~L~~n~l~~~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L 129 (953)
|++|+|++|.+++..|.. +.++++|++|++++|++++..| ++.+++|++|
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 205 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL 205 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEE
Confidence 555555555554444443 4445555555555555544333 2566777777
Q ss_pred ecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccc
Q 043900 130 FLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQL 209 (953)
Q Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 209 (953)
+|++|++++.+|. |+.+++|++|+|++|++++.+|..+.++++|++|++++|++++.+|.. .+++|++|++++|++
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF 281 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence 7777777766665 777777777777777777777777777777777777777777666654 577788888888888
Q ss_pred cCCCCCCCcCC-CCCcEEEcccccccCcCC-CCCCCCccceeeecccccC-CCCCCcccccccccccccccEEeccCCcc
Q 043900 210 TGAIPPAISNA-SNLELFQADVNKLTGEVP-YLEKPQRLSVFSITENSLG-SRGHSNLNFLCSLTNSTRLNRLLINANNF 286 (953)
Q Consensus 210 ~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-~l~~~~~L~~l~l~~n~l~-~~~~~~~~~l~~l~~~~~L~~L~l~~n~~ 286 (953)
++.+|..+..+ ++|++|++++|.+++..| .+..+++|+++++++|.+. ..+. ..+..+++|+.|++++|.+
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~------~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM------DTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH------HHHTTCTTCCEEECCSSEE
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH------HHHhcCCCCCEEeCcCCcc
Confidence 77777777665 888888888888886544 4777788888888888775 2221 1144556666677777766
Q ss_pred cccCChhhhhcc--------------------------ccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCC
Q 043900 287 GGLLPACISNLS--------------------------TTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIP 340 (953)
Q Consensus 287 ~~~~p~~~~~~~--------------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 340 (953)
.+.+|..+..++ ++|+.|++++|++++..|..|..+++|+.|++++|.+++..|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 666666665543 346666666666666777778888888888888888888888
Q ss_pred cCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccc
Q 043900 341 PAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSW 419 (953)
Q Consensus 341 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 419 (953)
..|+.+++|++|++++|++++.+|..++.+ .+++|++++|.+++.+|..++++++|++|+|++|++++.+|..+..+.
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~- 514 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE- 514 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-
Confidence 888888888888888888888888888776 578899999999988999999999999999999999988888877665
Q ss_pred cceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCc------------------------------------
Q 043900 420 LLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTL------------------------------------ 463 (953)
Q Consensus 420 ~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------------------------ 463 (953)
.++.|++++|++++.+|..++.+++|+.|++++|+++|.+|..+
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 45689999999999999999999999999999999887776543
Q ss_pred ----------------------------------cCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCc
Q 043900 464 ----------------------------------GSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPE 509 (953)
Q Consensus 464 ----------------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 509 (953)
+.+++|+.|+|++|+++|.+|.+|+.+++|+.|+|++|+++|.+|+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 3457889999999999999999999999999999999999999999
Q ss_pred cccccccCceEeccCCcCcccCCCC-CcccccccccccCCcCCCCCCCC
Q 043900 510 FLVGFQLLENLNLSNNNLEGMVPIE-GVFKNATITSVLGNLKLCGGIPE 557 (953)
Q Consensus 510 ~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lcg~~~~ 557 (953)
.+.++++|+.|||++|+++|.+|.. ..++.+....+.+| .+.|.+|.
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~ 722 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPE 722 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCS
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCC
Confidence 9999999999999999999999965 34455555555555 67777774
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-58 Score=558.38 Aligned_cols=550 Identities=21% Similarity=0.211 Sum_probs=464.1
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+++.|||+++++.+..+..|.++++|++|+|++|.++++.|.+|.++++|++|+|++|.+++..+.+|+++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 56899999999998655567999999999999999999988999999999999999999999555557999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCcccc--ccccccceeccccccc
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFG--WLKNLATLAMAENWLS 161 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~ 161 (953)
++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|++++..+..|. .+++|++|++++|+++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999977778899999999999999999988888999999999999999999977777665 4589999999999999
Q ss_pred CCCCCccccc---------------------------ccceEEecCCccccccccccccccccc--ccEEEeeCccccCC
Q 043900 162 GTIPSSIFNI---------------------------SSITAFDAGMNQLQGVIPLDFGFTLQN--LQFFSVFENQLTGA 212 (953)
Q Consensus 162 ~~~p~~l~~l---------------------------~~L~~L~L~~N~l~~~~~~~~~~~l~~--L~~L~L~~N~l~~~ 212 (953)
+..|..+..+ ++|+.|++++|++++..|..+. .++. |+.|++++|++++.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 8778776654 4567777888888877776665 4544 99999999999988
Q ss_pred CCCCCcCCCCCcEEEcccccccCcCC-CCCCCCccceeeecccccCCC-CCCccccc--ccccccccccEEeccCCcccc
Q 043900 213 IPPAISNASNLELFQADVNKLTGEVP-YLEKPQRLSVFSITENSLGSR-GHSNLNFL--CSLTNSTRLNRLLINANNFGG 288 (953)
Q Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~~~~L~~l~l~~n~l~~~-~~~~~~~l--~~l~~~~~L~~L~l~~n~~~~ 288 (953)
.+..|..+++|++|++++|++++.++ .+..+++|+.+++++|..... +...+..+ ..+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 88889999999999999999988765 578889999999987654321 00001111 145678899999999999999
Q ss_pred cCChhhhhccccCcEEEcccCccc--ccCCccccCC--CCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCC
Q 043900 289 LLPACISNLSTTLEMLLLDNNKIF--GNIPAAIGKF--VNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIP 364 (953)
Q Consensus 289 ~~p~~~~~~~~~L~~L~L~~N~i~--~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 364 (953)
..|..+..+ ++|++|++++|.+. ......|..+ ++|+.|++++|++++..|.+|..+++|++|+|++|++++.+|
T Consensus 344 ~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 344 IKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 888888887 58999999999853 2333344433 589999999999999999999999999999999999988776
Q ss_pred -CCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccC--CCCCccccCccccceeeeccCCcccCCCCcccc
Q 043900 365 -PSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLT--GTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVG 440 (953)
Q Consensus 365 -~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~ 440 (953)
..+.++ .+++|++++|.+.+..+..|..+++|+.|++++|.++ +.+|..+..+. .++.|++++|++++..+..|.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEEECCCCCCCcCChhhhc
Confidence 577777 5799999999999999999999999999999999987 46677666555 466999999999988888899
Q ss_pred CCCccceeeecCCcccccCC--------CCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCcccc
Q 043900 441 NLKNLEVLDVFENKLKGEIP--------STLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLV 512 (953)
Q Consensus 441 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 512 (953)
++++|++|+|++|++++..+ ..|.++++|+.|+|++|+|+...+..|..+++|+.|+|++|++++..+..|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 99999999999999986422 2478999999999999999966666799999999999999999987777789
Q ss_pred ccccCceEeccCCcCcccCCCCC--cccccccccccCCcCCCCCCC
Q 043900 513 GFQLLENLNLSNNNLEGMVPIEG--VFKNATITSVLGNLKLCGGIP 556 (953)
Q Consensus 513 ~l~~L~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~lcg~~~ 556 (953)
.+++|+.|++++|++++.+|... .++++....+.+|++.|.+..
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999999877532 467778888999999999764
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-56 Score=541.27 Aligned_cols=522 Identities=21% Similarity=0.219 Sum_probs=454.6
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+++.|||++|.+.+..|..++++++|++|+|++|+++.+.+.+|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 56899999999999888889999999999999999999966678999999999999999999777789999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCccc--CCCcccEEecccccccccCCcccccc--------------
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLG--NLSSINTLFLTDNNLDGGIPDTFGWL-------------- 147 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~L~~L~~L~L~~N~l~~~~~~~~~~l-------------- 147 (953)
++|.+++..|..|+++++|++|++++|++++..+..+. .+++|++|++++|++++..|..|..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 99999988899999999999999999999977776654 56899999999999998888877765
Q ss_pred -------------ccccceecccccccCCCCCccccccc--ceEEecCCcccccccccccccccccccEEEeeCccccCC
Q 043900 148 -------------KNLATLAMAENWLSGTIPSSIFNISS--ITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGA 212 (953)
Q Consensus 148 -------------~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 212 (953)
++|+.|++++|++++..|..+.++.. |+.|+|++|++++..|..+. .+++|++|++++|++++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCcc
Confidence 45678888889998888889988865 99999999999977666665 899999999999999999
Q ss_pred CCCCCcCCCCCcEEEcccccccCc-----CC-----CCCCCCccceeeecccccCCCCCCcccccccccccccccEEecc
Q 043900 213 IPPAISNASNLELFQADVNKLTGE-----VP-----YLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLIN 282 (953)
Q Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~-----~~-----~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~ 282 (953)
.|..|.++++|+.|++++|...+. .| .+..+++|+.+++++|.+..... ..+.++++|++|+++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS------NMFTGLINLKYLSLS 361 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT------TTTTTCTTCCEEECT
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh------hHhccccCCcEEECC
Confidence 999999999999999998866532 22 56778999999999999887543 235678899999999
Q ss_pred CCccccc-CC-hhhhhcc-ccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCC-cCccCCCCCCeEEecccc
Q 043900 283 ANNFGGL-LP-ACISNLS-TTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIP-PAIGELQNLRELRLQRNK 358 (953)
Q Consensus 283 ~n~~~~~-~p-~~~~~~~-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~ 358 (953)
+|.+... ++ ..+..+. ++|+.|++++|++++..|.+|..+++|+.|++++|.+++.+| ..|.++++|++|++++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 9986432 22 2333322 479999999999999999999999999999999999987665 789999999999999999
Q ss_pred ccCCCCCCCCCc-eeeEEEccCCcCC--CCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCC
Q 043900 359 FLGNIPPSIGNL-KVFNLDLSCNFLQ--GSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSI 435 (953)
Q Consensus 359 l~~~~p~~~~~l-~l~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~ 435 (953)
+++..+..|..+ .+++|++++|.+. +..|..|..+++|+.|+|++|++++ +|+..+.....++.|++++|++++..
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccc
Confidence 998888899887 5799999999987 5789999999999999999999995 55554444456779999999998642
Q ss_pred C--------ccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccC
Q 043900 436 P--------SEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKI 507 (953)
Q Consensus 436 ~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 507 (953)
+ ..|.++++|+.|+|++|+++...+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2 24789999999999999999555567999999999999999999887888899999999999999999888
Q ss_pred Ccccc-ccccCceEeccCCcCcccCCC
Q 043900 508 PEFLV-GFQLLENLNLSNNNLEGMVPI 533 (953)
Q Consensus 508 p~~~~-~l~~L~~l~l~~N~l~~~~p~ 533 (953)
|..+. .+++|+.|++++|++.+..+.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCcc
Confidence 88777 789999999999999987764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-56 Score=531.88 Aligned_cols=511 Identities=20% Similarity=0.203 Sum_probs=362.7
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE 87 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 87 (953)
.+|.++.++. .+|..+.. ++++|+|++|+|+++.|.+|.++++|++|+|++|++++..|..|+++++|++|+|++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4566666665 66665543 56777777777777667777777777777777777776667777777777777777777
Q ss_pred ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCc
Q 043900 88 LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSS 167 (953)
Q Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 167 (953)
+++..|..|+++++|++|++++|++++..|..|+++++|++|++++|++++.....+..+++|++|+|++|++++..|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 77666777777777777777777777555666777777777777777776544344444777777777777777555666
Q ss_pred ccccccce--EEecCCcccccccccccccccccccEEEeeCccc--------------------------cCCCCCCCcC
Q 043900 168 IFNISSIT--AFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQL--------------------------TGAIPPAISN 219 (953)
Q Consensus 168 l~~l~~L~--~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l--------------------------~~~~~~~~~~ 219 (953)
+..+++|+ .|++++|++++..|..+. ..+|+.|++++|.. ....+..+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhh--hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 66777776 677777777765555442 35666666666541 0111122222
Q ss_pred CC--CCcEEEcccccccCcCCC-CCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhh
Q 043900 220 AS--NLELFQADVNKLTGEVPY-LEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISN 296 (953)
Q Consensus 220 l~--~L~~L~L~~N~l~~~~~~-l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~ 296 (953)
+. +|+.|++++|.+++.++. +..+++|+.+++++|.+...+. .+..+++|++|++++|.+.+..|..+..
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECccCCcCcCchhhhhc
Confidence 22 566777777777766554 5666777777777776664432 2455667777777777777777777776
Q ss_pred ccccCcEEEcccCcccccCCc-cccCCCCCCEEEeecCcccccC--CcCccCCCCCCeEEeccccccCCCCCCCCCc-ee
Q 043900 297 LSTTLEMLLLDNNKIFGNIPA-AIGKFVNLQRLEMWNNRLSGTI--PPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KV 372 (953)
Q Consensus 297 ~~~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l 372 (953)
+ ++|++|++++|.+.+..|. .+..+++|+.|++++|.+++.. +..+..+++|++|++++|++++..|..++.+ .+
T Consensus 324 l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 324 F-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp C-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred c-CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 6 4788888888877754443 4777888888888888887665 6777888888888888888877777777766 46
Q ss_pred eEEEccCCcCCCCCCcc-CCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCC---CCccccCCCcccee
Q 043900 373 FNLDLSCNFLQGSIPSS-LGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGS---IPSEVGNLKNLEVL 448 (953)
Q Consensus 373 ~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~---~~~~~~~l~~L~~L 448 (953)
++|++++|.+.+..|.. |..+++|+.|++++|++++..|..+..+ ..++.|++++|++++. .+..+..+++|+.|
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 77888888887665543 7788888888888888876555555444 3456788888888752 33567888888888
Q ss_pred eecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCc
Q 043900 449 DVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLE 528 (953)
Q Consensus 449 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 528 (953)
++++|++++..|..|+.+++|+.|+|++|++++..|..+..++.| .|+|++|++++.+|..+..+++|+.|++++|+++
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 888888887778888888888888888888888888888888888 8888888888877888888888888888888888
Q ss_pred ccCCC
Q 043900 529 GMVPI 533 (953)
Q Consensus 529 ~~~p~ 533 (953)
+..+.
T Consensus 561 c~c~~ 565 (606)
T 3t6q_A 561 CTCSN 565 (606)
T ss_dssp CSGGG
T ss_pred ccCCc
Confidence 76553
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-55 Score=541.74 Aligned_cols=508 Identities=19% Similarity=0.184 Sum_probs=273.4
Q ss_pred cEEEEEeCCCeeeeecCccccCCccCceeecCCCccC-cCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 5 RVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFN-HGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 5 ~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
+++.|||++|.+.+..|..|.++++|++|+|++|.+. .+.|.+|.++++|++|+|++|.|++..|..|.++++|++|+|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 3445555555555444445555555555555555322 222445555555555555555555444555555555555555
Q ss_pred cCccccccCCcc--cCCccccceeeccccccccccC-CcccCCCcccEEecccccccccCCcccccc--ccccceecccc
Q 043900 84 FYNELVGKIPSE--LGSLSKIEHLSVSVNNLTGSIP-SSLGNLSSINTLFLTDNNLDGGIPDTFGWL--KNLATLAMAEN 158 (953)
Q Consensus 84 ~~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N 158 (953)
++|.+++..|.. |+++++|++|+|++|++++..+ ..|+++++|++|+|++|.+++..++.|..+ ++|+.|+|++|
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 555554433332 4555555555555555544332 244555555555555555554455555544 45555555555
Q ss_pred cccCCCCCccccccc------ceEEecCCccccccccccccccc--ccccEEEeeCc---------cccCCCCCCCcCC-
Q 043900 159 WLSGTIPSSIFNISS------ITAFDAGMNQLQGVIPLDFGFTL--QNLQFFSVFEN---------QLTGAIPPAISNA- 220 (953)
Q Consensus 159 ~l~~~~p~~l~~l~~------L~~L~L~~N~l~~~~~~~~~~~l--~~L~~L~L~~N---------~l~~~~~~~~~~l- 220 (953)
.+.+..|..+..+.+ |+.|++++|++++..+..+...+ .+++.|.+..+ .+.......|.++
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 555444444443333 55555555555444444333211 23444444321 2222222233332
Q ss_pred -CCCcEEEcccccccCcCC-CCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhcc
Q 043900 221 -SNLELFQADVNKLTGEVP-YLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLS 298 (953)
Q Consensus 221 -~~L~~L~L~~N~l~~~~~-~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~ 298 (953)
++|+.|++++|.+++.++ .+..+++|+.+++++|.+..... ..+.++++|++|++++|.+.+..|..+..+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l- 337 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYNLLGELYSSNFYGL- 337 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESCCCSCCCSCSCSSC-
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------HHhcCCCCCCEEECCCCCCCccCHHHhcCC-
Confidence 456666666666665533 24555666666666666554321 123445566666666666666556555555
Q ss_pred ccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEcc
Q 043900 299 TTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLS 378 (953)
Q Consensus 299 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~ 378 (953)
++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++. ..+++|+.|++++|+++ .+|... ..+..|+++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~~--~~l~~L~ls 409 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKIN--LTANLIHLS 409 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCCC--TTCCEEECC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccccc--cccceeecc
Confidence 3566666666666655555666666666666666666532 12556666666666665 334331 234556666
Q ss_pred CCcCCCCCC-ccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCccc-----CCCCccccCCCccceeeecC
Q 043900 379 CNFLQGSIP-SSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLT-----GSIPSEVGNLKNLEVLDVFE 452 (953)
Q Consensus 379 ~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~ 452 (953)
+|.+++... ..+.++++|+.|+|++|++++..+.........++.|+|++|.++ +..+..|.++++|+.|+|++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 666664321 223466666777777776664444333333445556667776665 23344566666677777777
Q ss_pred CcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCC
Q 043900 453 NKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 453 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 532 (953)
|+|++..|..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|..+ .+|+.|++++|++.+..+
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 777666666666667777777777777665555554 566677777777766666554 356666677776666554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-55 Score=528.75 Aligned_cols=504 Identities=20% Similarity=0.203 Sum_probs=367.2
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE 87 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 87 (953)
.++.++.++. .+|..+. +++++|+|++|+++++.+.+|.++++|++|+|++|++++..|..|.++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 5777787776 7787664 778888888888888777788888888888888888887777888888888888888888
Q ss_pred ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccc-cCCccccccccccceecccccccCCCCC
Q 043900 88 LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDG-GIPDTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
+++..|..|+++++|++|+|++|++++..+..|+++++|++|++++|++++ .+|..|+++++|++|+|++|++++..|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 887778888888888888888888886666778888888888888888875 4588888888888888888888877777
Q ss_pred cccccccce----EEecCCcccccccccccccccccccEEEeeCcccc-CCCCCCCcCCCCCcEEEc-------------
Q 043900 167 SIFNISSIT----AFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLT-GAIPPAISNASNLELFQA------------- 228 (953)
Q Consensus 167 ~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L------------- 228 (953)
.+..+.+|+ .|++++|.+++. +...+ ...+|+.|++++|.++ +..|..+.++++|+.+++
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~-~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFI-QDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEE-CTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhccccccceeeccCCCccee-Ccccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 777777665 788888888844 44444 2347888888888775 345556666666666665
Q ss_pred --------------------ccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccc
Q 043900 229 --------------------DVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGG 288 (953)
Q Consensus 229 --------------------~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~ 288 (953)
..|.+.+..+.+..+++|+.+++++|.+...+ .+..+++|+.|++++|.+ +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-S
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-c
Confidence 45555655555666677777777777765433 455666777777777777 5
Q ss_pred cCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCccccc--CCcCccCCCCCCeEEeccccccCCCCCC
Q 043900 289 LLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGT--IPPAIGELQNLRELRLQRNKFLGNIPPS 366 (953)
Q Consensus 289 ~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 366 (953)
.+|. + .+ ++|+.|++++|...+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ +|..
T Consensus 321 ~lp~-~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 321 QFPT-L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp SCCC-C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred cccc-C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 6663 3 44 57777777777544333 566777777777777777755 36677777777777777777764 5566
Q ss_pred CCCc-eeeEEEccCCcCCCCCC-ccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccC-CCCccccCCC
Q 043900 367 IGNL-KVFNLDLSCNFLQGSIP-SSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTG-SIPSEVGNLK 443 (953)
Q Consensus 367 ~~~l-~l~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~-~~~~~~~~l~ 443 (953)
+..+ .+++|++++|.+.+..| ..|..+++|++|++++|++++..|..+..+. .++.|++++|++++ .+|..|..++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCC
Confidence 6665 46777777777776666 5677777777777777777766665554443 45577777777776 3677777777
Q ss_pred ccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccc-cCceEec
Q 043900 444 NLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQ-LLENLNL 522 (953)
Q Consensus 444 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~l~l 522 (953)
+|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..|..+++|++|||++|+++ .+|..+..++ +|+.|++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 7777777777777777777777777777777777777777777777777777777777777 4566677765 4777777
Q ss_pred cCCcCcccCCC
Q 043900 523 SNNNLEGMVPI 533 (953)
Q Consensus 523 ~~N~l~~~~p~ 533 (953)
++|++.+..+.
T Consensus 553 ~~N~~~c~c~~ 563 (606)
T 3vq2_A 553 TNNSVACICEH 563 (606)
T ss_dssp CSCCCCCSSTT
T ss_pred cCCCcccCCcc
Confidence 77777766554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-54 Score=518.72 Aligned_cols=496 Identities=19% Similarity=0.130 Sum_probs=438.3
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
..++.|||+++++.+..|..|+++++|++|+|++|+++++.|.+|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46899999999999777889999999999999999999999999999999999999999999888999999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCcccccccccc--ceeccccccc
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLA--TLAMAENWLS 161 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~N~l~ 161 (953)
++|.+++..|..|+++++|++|++++|++++..+..+..+++|++|++++|++++..++.|+.+++|+ +|++++|+++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999977788999999999999999999975545666699999999999999988899999999999 8999999999
Q ss_pred CCCCCcccccccceEEecCCccccc-------------------------ccccccccccc--cccEEEeeCccccCCCC
Q 043900 162 GTIPSSIFNISSITAFDAGMNQLQG-------------------------VIPLDFGFTLQ--NLQFFSVFENQLTGAIP 214 (953)
Q Consensus 162 ~~~p~~l~~l~~L~~L~L~~N~l~~-------------------------~~~~~~~~~l~--~L~~L~L~~N~l~~~~~ 214 (953)
+..|.. +...+|+.|++++|.... .++...+..+. +|+.|++++|++++..+
T Consensus 193 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 GIEPGA-FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp EECTTT-TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred ccChhH-hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 666655 455789999999885110 11112222232 79999999999999888
Q ss_pred CCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChh-
Q 043900 215 PAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPAC- 293 (953)
Q Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~- 293 (953)
..|..+++|++|++++|+++..++.+..+++|+++++++|.+..... ..+..+++|++|++++|.+.+.+|..
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch------hhhhccCcCCEEECCCCCcccccchhh
Confidence 89999999999999999999888889999999999999999876432 34667889999999999999777765
Q ss_pred hhhccccCcEEEcccCcccccC--CccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCC-CCCc
Q 043900 294 ISNLSTTLEMLLLDNNKIFGNI--PAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPS-IGNL 370 (953)
Q Consensus 294 ~~~~~~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l 370 (953)
+..+ ++|++|++++|.+++.. +..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|.. +..+
T Consensus 346 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 346 LENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 5555 79999999999998776 788999999999999999999999999999999999999999999877654 7777
Q ss_pred -eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCC-C-ccccCccccceeeeccCCcccCCCCccccCCCccce
Q 043900 371 -KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTI-P-PQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEV 447 (953)
Q Consensus 371 -~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p-~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~ 447 (953)
.+++|++++|.+++..|..|..+++|++|+|++|++++.. | ...+.....++.|++++|++++..|..|..+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 5899999999999999999999999999999999998632 2 123344456779999999999988999999999999
Q ss_pred eeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCC
Q 043900 448 LDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIP 508 (953)
Q Consensus 448 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 508 (953)
|+|++|++++..|..|..+++| .|+|++|++++.+|..+..+++|+.|++++|.+.+..+
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999 99999999999999999999999999999999997544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-53 Score=527.33 Aligned_cols=526 Identities=21% Similarity=0.183 Sum_probs=445.8
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCcccccc-CcCccCCCCCcEEeccC
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEI-PANISSCSNLIQIRLFY 85 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~L~~ 85 (953)
...|.+++++. .+|. -.++|++|+|++|.|+++.|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46788999997 8887 4689999999999999999999999999999999999665555 88999999999999999
Q ss_pred ccccccCCcccCCccccceeeccccccccccCCc--ccCCCcccEEecccccccccCC-ccccccccccceecccccccC
Q 043900 86 NELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSS--LGNLSSINTLFLTDNNLDGGIP-DTFGWLKNLATLAMAENWLSG 162 (953)
Q Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~L~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 162 (953)
|.+++..|++|+++++|++|+|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|++++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999999866665 9999999999999999987655 689999999999999999998
Q ss_pred CCCCccccc--ccceEEecCCccccccccccccccccc------ccEEEeeCccccCCCCCCCcCC---CCCcEEEcccc
Q 043900 163 TIPSSIFNI--SSITAFDAGMNQLQGVIPLDFGFTLQN------LQFFSVFENQLTGAIPPAISNA---SNLELFQADVN 231 (953)
Q Consensus 163 ~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~------L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N 231 (953)
..|..+..+ ++|+.|++++|.+.+..|..+. .+++ |+.|++++|++++..+..+... .+++.|.++.+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 889999888 8999999999999988887654 3443 9999999999998888777654 67888888743
Q ss_pred cc---------cCcC-CCCCC--CCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccc
Q 043900 232 KL---------TGEV-PYLEK--PQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLST 299 (953)
Q Consensus 232 ~l---------~~~~-~~l~~--~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~ 299 (953)
.+ .... ..+.. ...|+.+++++|.+..... ..+..+++|+.|++++|++.+..|..+..+ +
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~ 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGL-D 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTC-S
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCC-C
Confidence 33 2221 11222 3689999999998876432 345678899999999999999988888887 5
Q ss_pred cCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccC
Q 043900 300 TLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSC 379 (953)
Q Consensus 300 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~ 379 (953)
+|++|+|++|++++..|..|..+++|+.|++++|.|++..+.+|..+++|++|+|++|.+++. +. ...++.|++++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~ 390 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSG 390 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEES
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCC
Confidence 899999999999988899999999999999999999988888999999999999999999843 22 22468899999
Q ss_pred CcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCc-cccCCCccceeeecCCccc--
Q 043900 380 NFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPS-EVGNLKNLEVLDVFENKLK-- 456 (953)
Q Consensus 380 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-- 456 (953)
|.++ .+|.. ..+++.|++++|++++.-...+......++.|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus 391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 9998 45554 467899999999998543322333345677999999999965443 4677899999999999997
Q ss_pred ---ccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCC
Q 043900 457 ---GEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPI 533 (953)
Q Consensus 457 ---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 533 (953)
+..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+. ++|+.|+|++|+|++.+|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 44557789999999999999999999999999999999999999999987777665 8999999999999999885
Q ss_pred CCcccccccccccCCcCCCCCCC
Q 043900 534 EGVFKNATITSVLGNLKLCGGIP 556 (953)
Q Consensus 534 ~~~~~~~~~~~~~~n~~lcg~~~ 556 (953)
. +..+....+.+|++.|.+..
T Consensus 545 ~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 545 V--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp C--CSSCCEEEEEEECCCCSSSC
T ss_pred H--hCCcCEEEecCCCccccccc
Confidence 4 66778888999999997654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9e-54 Score=512.87 Aligned_cols=488 Identities=18% Similarity=0.148 Sum_probs=428.6
Q ss_pred cCcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEe
Q 043900 3 HQRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIR 82 (953)
Q Consensus 3 ~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 82 (953)
..+++.|||+++++.+..+..|.++++|++|+|++|+++++.|.+|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35789999999999977777999999999999999999998899999999999999999999988899999999999999
Q ss_pred ccCccccccCCcccCCccccceeecccccccc-ccCCcccCCCcccEEecccccccccCCcccccccccc----ceeccc
Q 043900 83 LFYNELVGKIPSELGSLSKIEHLSVSVNNLTG-SIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLA----TLAMAE 157 (953)
Q Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~ 157 (953)
|++|.+++..+..|+++++|++|++++|++++ .+|..|+++++|++|+|++|++++..+..|+.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999997777899999999999999999986 5699999999999999999999988899999998887 799999
Q ss_pred ccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEe---------------------------------
Q 043900 158 NWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSV--------------------------------- 204 (953)
Q Consensus 158 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L--------------------------------- 204 (953)
|++++ +|.......+|+.|++++|.+.+.........+++|+.+++
T Consensus 191 n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcce-eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 99994 45554555599999999999874333333346666666665
Q ss_pred eCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCC
Q 043900 205 FENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINAN 284 (953)
Q Consensus 205 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n 284 (953)
..|.+.+..|. +..+++|+.|++++|.+...+ .+...++|+.+++++|.++..+ .+ .++.|+.|++++|
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp--------~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP--------TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC--------CC-CCSSCCEEEEESC
T ss_pred ccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc--------cC-CCCccceeeccCC
Confidence 56677766666 899999999999999998765 8888999999999999986544 33 7889999999999
Q ss_pred cccccCChhhhhccccCcEEEcccCccccc--CCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCC
Q 043900 285 NFGGLLPACISNLSTTLEMLLLDNNKIFGN--IPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGN 362 (953)
Q Consensus 285 ~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 362 (953)
...+.+ .+..+ ++|++|++++|++++. .|..+..+++|+.|++++|.+++ .|..|..+++|++|++++|++++.
T Consensus 339 ~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 339 KGSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp SSCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred cCccch--hhccC-CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 766554 34455 6899999999999876 38889999999999999999985 668999999999999999999988
Q ss_pred CC-CCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCC-CCccccCccccceeeeccCCcccCCCCccc
Q 043900 363 IP-PSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGT-IPPQFLGLSWLLIGLDLSRNQLTGSIPSEV 439 (953)
Q Consensus 363 ~p-~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~ 439 (953)
.| ..+..+ .+++|++++|.+.+..|..|..+++|++|++++|++++. +|..+..+ ..++.|++++|++++..|..|
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhh
Confidence 87 678777 589999999999999999999999999999999999974 55555544 566799999999999999999
Q ss_pred cCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCC-CCcEEECCCCcccccCC
Q 043900 440 GNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLK-GLNVLDLSQNNLSGKIP 508 (953)
Q Consensus 440 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 508 (953)
.++++|+.|+|++|++++..|..|+.+++|++|+|++|+|+ .+|..+..++ +|++|++++|.+.+..+
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999888999999999999999999999 6777799997 59999999999997544
No 11
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-53 Score=449.73 Aligned_cols=264 Identities=28% Similarity=0.437 Sum_probs=205.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.+++.+.++||+|+||+||+|++.+ .||||+++.. .....+.|.+|++++++++|||||+++|+|.. +.
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~------~~ 105 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------DN 105 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SS
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC------Ce
Confidence 3567888999999999999998754 5999999743 34456789999999999999999999998742 45
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++|||||++|+|.++++.. ...+++.+++.|+.|||.||+|||++ +||||||||+|||+++++.+||
T Consensus 106 ~~iVmEy~~gGsL~~~l~~~---------~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki 173 (307)
T 3omv_A 106 LAIVTQWCEGSSLYKHLHVQ---------ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKI 173 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTS---------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEE
T ss_pred EEEEEEcCCCCCHHHHHhhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEE
Confidence 79999999999999999632 23599999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCC---CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG---SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+|||+|+...............||+.|||||++.+ .+|+.++|||||||++|||+||+.||.+...... .......
T Consensus 174 ~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~-~~~~~~~ 252 (307)
T 3omv_A 174 GDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ-IIFMVGR 252 (307)
T ss_dssp CCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHT
T ss_pred eeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHH-HHHHHhc
Confidence 99999987654433334455679999999999864 4689999999999999999999999975322111 1111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhc
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILL 941 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~ 941 (953)
... .+... .....+++++.+++.+||+.||++||||+||++.|+.++..++
T Consensus 253 ~~~-------~p~~~-------------------~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 253 GYA-------SPDLS-------------------KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp TCC-------CCCST-------------------TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred CCC-------CCCcc-------------------cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 100 00000 0011356679999999999999999999999999999876654
No 12
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=4.8e-53 Score=451.09 Aligned_cols=271 Identities=24% Similarity=0.389 Sum_probs=217.0
Q ss_pred cCCcccCcccccceeeEEEEEEcC-----CCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQ-----GKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
++|.+.+.||+|+||+||+|++.. +++.||||+++.......++|.+|++++++++|||||+++|+|.+ +
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 87 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----G 87 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----C
Confidence 467888999999999999999753 467899999987777777899999999999999999999999753 4
Q ss_pred CceeEEEeeccCCchhhccccCCcCC---cccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITRED---KTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~---~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
+..++|||||++|+|.++++...... ........++|.+++.|+.|||+||+|||++ +|+||||||+|||++++
T Consensus 88 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 88 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN 164 (299)
T ss_dssp SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence 77999999999999999997543110 0112234799999999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~ 861 (953)
+.+||+|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||.+....+ ....
T Consensus 165 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~ 242 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE--VIEC 242 (299)
T ss_dssp GCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHH
T ss_pred CcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH--HHHH
Confidence 9999999999987654444334445569999999999999999999999999999999999 899997632211 1111
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhc
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILL 941 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~ 941 (953)
+... .. ...+..+++++.+++.+||+.||++||||+||++.|+++.+..+
T Consensus 243 i~~~-----------~~-------------------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 243 ITQG-----------RV-------------------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp HHHT-----------CC-------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred HHcC-----------CC-------------------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 1100 00 00111356679999999999999999999999999999987644
No 13
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.8e-52 Score=451.61 Aligned_cols=269 Identities=24% Similarity=0.385 Sum_probs=208.8
Q ss_pred cCCcccCcccccceeeEEEEEEcC-----CCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQ-----GKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
++|.+.++||+|+||+||+|++.. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+ +
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 115 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-----G 115 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----C
Confidence 356778899999999999999753 467899999987777777899999999999999999999999753 3
Q ss_pred CceeEEEeeccCCchhhccccCCcCCc-----ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDK-----TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD 780 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~-----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 780 (953)
+..++|||||++|+|.++++....... .......++|.+++.|+.|||+||+|||+. +||||||||+|||++
T Consensus 116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG 192 (329)
T ss_dssp SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence 779999999999999999976543211 112345799999999999999999999999 999999999999999
Q ss_pred CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHH
Q 043900 781 EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLH 859 (953)
Q Consensus 781 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~ 859 (953)
+++.+||+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||......+ ..
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~ 270 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE--AI 270 (329)
T ss_dssp TTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH--HH
T ss_pred CCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH--HH
Confidence 999999999999987754444444455679999999999999999999999999999999999 899997532211 11
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
..+.... +...+..+++++.+++.+||+.||++||||+||++.|+.+.+.
T Consensus 271 ~~i~~g~------------------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 271 DCITQGR------------------------------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHHHTC------------------------------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHcCC------------------------------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 1110000 0001113566799999999999999999999999999999765
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=482.73 Aligned_cols=486 Identities=20% Similarity=0.203 Sum_probs=327.2
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE 87 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 87 (953)
.++-++.++. ++|..+. +++++|+|++|+++++.+.+|.++++|++|+|++|++++..|..|.++++|++|+|++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 3455555554 5666543 457777777777777666677777777777777777776666667777777777777777
Q ss_pred ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccc-cCCccccccccccceecccccccCCCCC
Q 043900 88 LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDG-GIPDTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
+++..|..|+++++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 776666677777777777777777775444467777777777777777765 2467777777777777777777755566
Q ss_pred cccccccc----eEEecCCcccccccccccccccccccEEEeeCcccc-------------------------------C
Q 043900 167 SIFNISSI----TAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLT-------------------------------G 211 (953)
Q Consensus 167 ~l~~l~~L----~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------------~ 211 (953)
.+..+.+| +.|++++|.+++..|..+. ..+|+.|++++|... .
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 66666666 6777777777755554443 236777777666322 1
Q ss_pred CCCCCCcCCCC--CcEEEcccc-cccCcCC-CCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCccc
Q 043900 212 AIPPAISNASN--LELFQADVN-KLTGEVP-YLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFG 287 (953)
Q Consensus 212 ~~~~~~~~l~~--L~~L~L~~N-~l~~~~~-~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~ 287 (953)
.....+..+.+ ++.+++++| .+.+..+ .+..+++|+.+++++|.+...+. .+..+ +|++|++++|.+.
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCS
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCccc
Confidence 11122222222 344444444 4444333 35556777777777776654221 11222 4444444444444
Q ss_pred ccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccC--CcCccCCCCCCeEEeccccccCCCCC
Q 043900 288 GLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTI--PPAIGELQNLRELRLQRNKFLGNIPP 365 (953)
Q Consensus 288 ~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~ 365 (953)
.+|.. .+ ++|+.|++++|.+.+..+. ..+++|+.|++++|.+++.. |..+..+++|++|++++|.+
T Consensus 318 -~l~~~--~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l------ 385 (570)
T 2z63_A 318 -QFPTL--KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV------ 385 (570)
T ss_dssp -SCCBC--BC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE------
T ss_pred -ccCcc--cc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc------
Confidence 22221 11 3455555555555433332 44555555555555554332 44455555555555555544
Q ss_pred CCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCcc
Q 043900 366 SIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNL 445 (953)
Q Consensus 366 ~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L 445 (953)
.+. |..+..+++|+.|++++|++++..|...+.....++.|++++|.+++..|..|.++++|
T Consensus 386 -----------------~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 386 -----------------ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp -----------------EEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred -----------------ccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 433 33377888888888888888866664444555567788999999888889999999999
Q ss_pred ceeeecCCccc-ccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccC
Q 043900 446 EVLDVFENKLK-GEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSN 524 (953)
Q Consensus 446 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~ 524 (953)
+.|++++|+++ +.+|..|..+++|++|+|++|++++..|.+|..+++|++|+|++|++++..|..+..+++|+.|++++
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 99999999998 57899999999999999999999998899999999999999999999998888899999999999999
Q ss_pred CcCcccCCCCCc
Q 043900 525 NNLEGMVPIEGV 536 (953)
Q Consensus 525 N~l~~~~p~~~~ 536 (953)
|+++|.+|....
T Consensus 528 N~~~~~~~~~~~ 539 (570)
T 2z63_A 528 NPWDCSCPRIDY 539 (570)
T ss_dssp SCBCCCTTTTHH
T ss_pred CcccCCCcchHH
Confidence 999999886543
No 15
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=6e-52 Score=444.63 Aligned_cols=265 Identities=22% Similarity=0.334 Sum_probs=210.7
Q ss_pred CCcccCcccccceeeEEEEEEc-----CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 632 GFASANEIGVGSFGSVYKGILD-----QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 632 ~~~~~~~ig~G~~g~Vy~~~~~-----~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
++++.+.||+|+||+||+|++. .+++.||||+++.. .....++|.+|+.++++++|||||+++|+|.. +
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-----~ 101 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK-----D 101 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----S
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE-----C
Confidence 4567889999999999999974 34578999999743 33445789999999999999999999999753 3
Q ss_pred CceeEEEeeccCCchhhccccCCcCCc------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDK------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL 779 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 779 (953)
+..++|||||++|+|.++++....... .......++|.+++.|+.|||+||+|||+. +||||||||+|||+
T Consensus 102 ~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl 178 (308)
T 4gt4_A 102 QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV 178 (308)
T ss_dssp SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEE
Confidence 678999999999999999965432211 112234699999999999999999999999 99999999999999
Q ss_pred cCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccH
Q 043900 780 DEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNL 858 (953)
Q Consensus 780 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~ 858 (953)
++++.+||+|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.... ..
T Consensus 179 ~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--~~ 256 (308)
T 4gt4_A 179 YDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--DV 256 (308)
T ss_dssp CGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--HH
T ss_pred CCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH--HH
Confidence 9999999999999987654444444455679999999999999999999999999999999999 89999764221 11
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSI 936 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i 936 (953)
...+.. ... .+.+..+++++.+++.+||+.||++||||+||++.|++.
T Consensus 257 ~~~i~~-----------~~~-------------------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 257 VEMIRN-----------RQV-------------------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHT-----------TCC-------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHc-----------CCC-------------------CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 111110 000 001124567799999999999999999999999999864
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.4e-50 Score=475.04 Aligned_cols=485 Identities=21% Similarity=0.204 Sum_probs=358.6
Q ss_pred EEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccc
Q 043900 9 LNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNEL 88 (953)
Q Consensus 9 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l 88 (953)
.|.+++++. .+|+.+. ++|++|+|++|+++++.|.+|.++++|++|+|++|+|++..|..|+++++|++|+|++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 678888887 8998775 7999999999999998899999999999999999999988889999999999999999999
Q ss_pred cccCCcccCCccccceeeccccccccc-cCCcccCCCcccEEeccccc-ccccCCccccccccccceecccccccCCCCC
Q 043900 89 VGKIPSELGSLSKIEHLSVSVNNLTGS-IPSSLGNLSSINTLFLTDNN-LDGGIPDTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
++..|..|+++++|++|+|++|++++. .|..|+++++|++|++++|+ ++...+..|.++++|++|++++|++++..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 977777899999999999999999863 57789999999999999999 5544457899999999999999999988999
Q ss_pred cccccccceEEecCCcccccccccccccccccccEEEeeCccccCCC---CCCCcCCCCCcEEEcccccccCcCC-----
Q 043900 167 SIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAI---PPAISNASNLELFQADVNKLTGEVP----- 238 (953)
Q Consensus 167 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~----- 238 (953)
.+..+++|++|+++.|.+. .+|..++..+++|++|++++|++++.. ......+++|+.|++++|.+++..+
T Consensus 167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 9999999999999999987 667666667999999999999999642 2334568899999999998875422
Q ss_pred CCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCccccc-----CChhhhhccccCcEEEcccCcccc
Q 043900 239 YLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGL-----LPACISNLSTTLEMLLLDNNKIFG 313 (953)
Q Consensus 239 ~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~-----~p~~~~~~~~~L~~L~L~~N~i~~ 313 (953)
.+.....|+.+++++|.+...+.........+..+.+++.|.+.++.+... ++. +.....+|+.|++++|++.
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCCC-
T ss_pred Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCccc-
Confidence 234456677777777776554322211222334455555555555544321 111 1122234555555555554
Q ss_pred cCCccc-cCCCCCCEEEeecCcccccCC---cCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCC--
Q 043900 314 NIPAAI-GKFVNLQRLEMWNNRLSGTIP---PAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIP-- 387 (953)
Q Consensus 314 ~~~~~~-~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p-- 387 (953)
.+|..+ .++++|+.|++++|.+++..| ..++.+++|++|+|++|+++ +..+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~~~~~ 380 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----------------------SMQKTG 380 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-----------------------CHHHHH
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-----------------------ccccch
Confidence 333333 345555555555555554332 23445555555555555554 3221
Q ss_pred ccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCc
Q 043900 388 SSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCK 467 (953)
Q Consensus 388 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 467 (953)
..+..+++|++|+|++|+++ .+|..+..+ ..++.|++++|++++ +|..+ .++|++|+|++|+|++.. ..++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~ 451 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWP-EKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLP 451 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCC-TTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCT
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhccc-ccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCC
Confidence 34566667777777777776 566554443 345567777777763 34333 257888888888888542 5688
Q ss_pred cccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCC
Q 043900 468 KLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPI 533 (953)
Q Consensus 468 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 533 (953)
+|++|+|++|+|+ .+|. ...+++|++|||++|++++.+|..+..+++|+.|++++|+++|..|.
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 8999999999998 5665 46788999999999999988888888999999999999999887774
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-51 Score=491.50 Aligned_cols=454 Identities=20% Similarity=0.274 Sum_probs=347.1
Q ss_pred cCcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCc------------CCCccCCCCCCCcEEeCCCCccccccCc
Q 043900 3 HQRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNH------------GIPSEFDRLQRLQVLALNNNSIGGEIPA 70 (953)
Q Consensus 3 ~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~i~~~~p~ 70 (953)
.++|+.|+|+++++.|.+|+++++|++|++|+|++|.+.. .+|... +..|+ +++++|.+.+.+|.
T Consensus 80 ~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 4689999999999999999999999999999999998732 123222 45566 77777777766666
Q ss_pred CccC-CCCCcEEeccCccccccCCcccCCccccceeecc--ccccccccCCcccCCCcccEEeccccccccc--------
Q 043900 71 NISS-CSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS--VNNLTGSIPSSLGNLSSINTLFLTDNNLDGG-------- 139 (953)
Q Consensus 71 ~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-------- 139 (953)
.+.. +..+..+++....+. ......++.+++. +|++++ +|.+|+++++|++|+|++|++++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hHHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 5552 223333333333222 1112233333333 578887 788888888888888888888864
Q ss_pred ---------CCcccc--ccccccceecccccccCCCCCcccccccceEEecCCcc-ccc-cccccccccc------cccc
Q 043900 140 ---------IPDTFG--WLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQ-LQG-VIPLDFGFTL------QNLQ 200 (953)
Q Consensus 140 ---------~~~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~~l------~~L~ 200 (953)
+|+.++ ++++|++|+|++|++.+.+|..+.++++|++|++++|+ +++ .+|..+. .+ ++|+
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~ 308 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQ 308 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCC
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCC
Confidence 788877 88888888888888888888888888888888888888 887 7887765 44 8899
Q ss_pred EEEeeCccccCCCCC--CCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccE
Q 043900 201 FFSVFENQLTGAIPP--AISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNR 278 (953)
Q Consensus 201 ~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~ 278 (953)
+|++++|+++ .+|. .++++++|+.|++++|++++..|.+
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~-------------------------------------- 349 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAF-------------------------------------- 349 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCC--------------------------------------
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhh--------------------------------------
Confidence 9999999998 7887 8889999999998888887544321
Q ss_pred EeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCC-CCEEEeecCcccccCCcCccCCC--CCCeEEec
Q 043900 279 LLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVN-LQRLEMWNNRLSGTIPPAIGELQ--NLRELRLQ 355 (953)
Q Consensus 279 L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~L~ 355 (953)
..+ ++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+..++ +|++|+++
T Consensus 350 ----------------~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 350 ----------------GSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp ----------------EEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred ----------------CCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 112 35666777777766 56666777777 777777777777 5666666544 77777777
Q ss_pred cccccCCCCCCCC-------Cc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccc-------c
Q 043900 356 RNKFLGNIPPSIG-------NL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSW-------L 420 (953)
Q Consensus 356 ~N~l~~~~p~~~~-------~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-------~ 420 (953)
+|++++.+|..+. .+ .+++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..++.... .
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 7777777776665 33 5677888888888544445667899999999999998 78877665543 6
Q ss_pred ceeeeccCCcccCCCCcccc--CCCccceeeecCCcccccCCCCccCCccccEEEc------cCccccCCCCccccCCCC
Q 043900 421 LIGLDLSRNQLTGSIPSEVG--NLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEM------QGNFLQGPIPSSLSSLKG 492 (953)
Q Consensus 421 l~~L~ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~ 492 (953)
++.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+| ++|++.+.+|.++..+++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 779999999999 6888886 99999999999999996 8999999999999999 568889999999999999
Q ss_pred CcEEECCCCcccccCCccccccccCceEeccCCcCcccC
Q 043900 493 LNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMV 531 (953)
Q Consensus 493 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 531 (953)
|+.|+|++|++ +.+|..+. ++|+.|++++|++....
T Consensus 568 L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 568 LTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 99999999999 57888766 79999999999987543
No 18
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=6.3e-51 Score=439.24 Aligned_cols=250 Identities=22% Similarity=0.276 Sum_probs=207.6
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeE
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKAL 710 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 710 (953)
+.|+..++||+|+||+||+|+++.+++.||||+++.......+.+.+|+++|++++|||||++++++. +++..||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~i 148 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELWV 148 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEEE
Confidence 46899999999999999999999999999999998665556677899999999999999999999964 4478999
Q ss_pred EEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEecc
Q 043900 711 VFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDF 790 (953)
Q Consensus 711 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 790 (953)
|||||++|+|.+++.. ..+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+||
T Consensus 149 vmEy~~gg~L~~~l~~-----------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DF 214 (346)
T 4fih_A 149 VMEFLEGGALTDIVTH-----------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDF 214 (346)
T ss_dssp EECCCTTEEHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCC
T ss_pred EEeCCCCCcHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecC
Confidence 9999999999999852 3589999999999999999999999 9999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchh
Q 043900 791 GLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHV 870 (953)
Q Consensus 791 G~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 870 (953)
|+|+.+.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... ..........+..
T Consensus 215 Gla~~~~~~~--~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~~~~~- 289 (346)
T 4fih_A 215 GFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDNLPPR- 289 (346)
T ss_dssp TTCEECCSSS--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSSCCC-
T ss_pred cCceecCCCC--CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcCCCCC-
Confidence 9999774332 2334567999999999999999999999999999999999999999752211 1111111111000
Q ss_pred hhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 871 VDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 871 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. .....+++++.+++.+||+.||++|||++|+++
T Consensus 290 -------~--------------------~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 290 -------L--------------------KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp -------C--------------------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------C--------------------CccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0 001134567889999999999999999999876
No 19
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=4.3e-51 Score=441.31 Aligned_cols=251 Identities=20% Similarity=0.276 Sum_probs=200.6
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
++|++.+.||+|+||+||+|++..+++.||||+++.. .....+.+.+|++++++++|||||++++++. +++..
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~-----~~~~~ 98 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFE-----ENGSL 98 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEE-----ECCEE
Confidence 6899999999999999999999999999999999643 3445678999999999999999999999954 45789
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
|||||||+||+|.+++.... ...+++.+++.|+.||+.||+|||++ +||||||||+|||++.++.+||+
T Consensus 99 yiVmEy~~gg~L~~~i~~~~--------~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~ 167 (350)
T 4b9d_A 99 YIVMDYCEGGDLFKRINAQK--------GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLG 167 (350)
T ss_dssp EEEEECCTTCBHHHHHHHTT--------TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEEC
T ss_pred EEEEeCCCCCcHHHHHHHcC--------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEc
Confidence 99999999999999996332 23578999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCc
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
|||+|+.... ........+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+ .+........+
T Consensus 168 DFGla~~~~~--~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~~~~- 243 (350)
T 4b9d_A 168 DFGIARVLNS--TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN-LVLKIISGSFP- 243 (350)
T ss_dssp STTEESCCCH--HHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHTCCC-
T ss_pred ccccceeecC--CcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HHHHHHcCCCC-
Confidence 9999986532 1122334579999999999999999999999999999999999999997532111 11111111000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ...+++++.+++.+||+.||++|||++|+++
T Consensus 244 -----------~~-------------------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 244 -----------PV-------------------SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp -----------CC-------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -----------CC-------------------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 00 0123456889999999999999999999986
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=465.20 Aligned_cols=509 Identities=22% Similarity=0.211 Sum_probs=426.2
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
..+.++.++.+++. +|..+. .++++|+|++|++++..+.+|.++++|++|+|++|++++..|..|+++++|++|+|+
T Consensus 8 ~~~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 8 PNITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTTEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 35678999999997 666553 589999999999998888899999999999999999998888899999999999999
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccC-CCCCcccccccceEEecCCcccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSG-TIPSSIFNISSITAFDAGMNQLQGV 187 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~ 187 (953)
+|++++..|.+|+++++|++|++++|++++..+..|+++++|++|+|++|++++ .+|..+.++++|++|++++|++++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 999998888999999999999999999997766689999999999999999986 4699999999999999999999976
Q ss_pred cccccccccccc----cEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCc--CCCCCCCCccceeeecccccCC---
Q 043900 188 IPLDFGFTLQNL----QFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGE--VPYLEKPQRLSVFSITENSLGS--- 258 (953)
Q Consensus 188 ~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~l~~~~~L~~l~l~~n~l~~--- 258 (953)
.+..+. .+++| +.|++++|.+++..+..+..+ +|+.|++++|..... +..+..+..++...+.-..+..
T Consensus 165 ~~~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 165 YCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp CGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred cHHHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 666655 78888 899999999998888888776 899999999854321 1123334444444443322211
Q ss_pred ---CCCCcccccccccccccccEEeccCC-cccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCc
Q 043900 259 ---RGHSNLNFLCSLTNSTRLNRLLINAN-NFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNR 334 (953)
Q Consensus 259 ---~~~~~~~~l~~l~~~~~L~~L~l~~n-~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 334 (953)
.+...+ ..+..+ .+..+.++.+ .+.+..|..+..+ ++|+.|++++|.+. .+|..+..+ +|+.|++++|.
T Consensus 243 l~~~~~~~~---~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 243 LEKFDKSAL---EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCK 315 (570)
T ss_dssp CEECCTTTT---GGGGGS-EEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCB
T ss_pred hhhcchhhh---cccccc-chhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCc
Confidence 111111 112222 3667778777 7778888888887 68999999999998 578888888 99999999999
Q ss_pred ccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCCC--CccCCCCCCCcEEEcCCCccCCCCC
Q 043900 335 LSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGSI--PSSLGQYKTLTIIDLSDNNLTGTIP 411 (953)
Q Consensus 335 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p 411 (953)
+. .+|. ..+++|+.|++++|.+.+..+. ..+ .+++|++++|.+++.. |..+..+++|++|++++|+++ .+|
T Consensus 316 ~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~ 389 (570)
T 2z63_A 316 FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389 (570)
T ss_dssp CS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEE
T ss_pred cc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccc
Confidence 98 5565 5789999999999999876665 333 5799999999998654 778899999999999999998 455
Q ss_pred ccccCccccceeeeccCCcccCCCC-ccccCCCccceeeecCCcccccCCCCccCCccccEEEccCcccc-CCCCccccC
Q 043900 412 PQFLGLSWLLIGLDLSRNQLTGSIP-SEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQ-GPIPSSLSS 489 (953)
Q Consensus 412 ~~~~~~~~~l~~L~ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~ 489 (953)
..+..+ ..++.|++++|.+++..| ..|..+++|++|++++|.+++..|..|.++++|++|+|++|+++ +.+|..+..
T Consensus 390 ~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EEEETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cccccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 555544 456799999999998766 57899999999999999999999999999999999999999998 679999999
Q ss_pred CCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCCC-CcccccccccccCCcCCCCCCC
Q 043900 490 LKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIE-GVFKNATITSVLGNLKLCGGIP 556 (953)
Q Consensus 490 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lcg~~~ 556 (953)
+++|++|+|++|++++..|..+..+++|+.|++++|++++.+|.. ..++.+....+.+|+..|.++.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999988999999999999999999999987753 4567777888899988887543
No 21
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.8e-50 Score=440.86 Aligned_cols=276 Identities=24% Similarity=0.330 Sum_probs=219.4
Q ss_pred HHhhcCCcccCcccccceeeEEEEEEcCC-----CeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCC-CCeeEEEeeecc
Q 043900 627 YNATDGFASANEIGVGSFGSVYKGILDQG-----KTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRH-RNLVKILTACSG 699 (953)
Q Consensus 627 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~ 699 (953)
+...++|++.+.||+|+||+||+|++... .+.||||+++... ....+.+.+|+++++++.| ||||+++|+|..
T Consensus 60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~ 139 (353)
T 4ase_A 60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 139 (353)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred EecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEe
Confidence 33457899999999999999999998654 3579999997433 3456789999999999965 999999999743
Q ss_pred cccCCCCceeEEEeeccCCchhhccccCCcCCc------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCC
Q 043900 700 VDYQGNDFKALVFEFMQNRSLEEWLHPITREDK------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLK 773 (953)
Q Consensus 700 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 773 (953)
.+...++|||||++|+|.++++....... .......+++.+++.|+.|||+||+|||++ +|||||||
T Consensus 140 ----~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK 212 (353)
T 4ase_A 140 ----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLA 212 (353)
T ss_dssp ----TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred ----cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccC
Confidence 34568999999999999999975432110 011234689999999999999999999999 99999999
Q ss_pred CCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcc
Q 043900 774 PSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMF 852 (953)
Q Consensus 774 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~ 852 (953)
|+|||+++++.+||+|||+|+.+.............||+.|||||++.+..|+.++|||||||++|||+| |+.||.+..
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999998765555445556679999999999999999999999999999999998 999997643
Q ss_pred cCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 853 EGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
..+ .+........ +...+..+++++.+++.+||+.||++||||+||++.
T Consensus 293 ~~~-~~~~~i~~g~------------------------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~ 341 (353)
T 4ase_A 293 IDE-EFCRRLKEGT------------------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 341 (353)
T ss_dssp CSH-HHHHHHHHTC------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred HHH-HHHHHHHcCC------------------------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence 221 1111111100 000111345678999999999999999999999999
Q ss_pred HHHHHHHh
Q 043900 933 LQSIKNIL 940 (953)
Q Consensus 933 L~~i~~~~ 940 (953)
|+++.+..
T Consensus 342 L~~llq~~ 349 (353)
T 4ase_A 342 LGNLLQAN 349 (353)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987653
No 22
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-50 Score=427.04 Aligned_cols=251 Identities=23% Similarity=0.339 Sum_probs=198.3
Q ss_pred cccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeEE
Q 043900 634 ASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKALV 711 (953)
Q Consensus 634 ~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 711 (953)
+..++||+|+||+||+|.+..+++.||+|++... .....+.+.+|++++++++|||||+++++|... .......++|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 5667899999999999999999999999999633 344567899999999999999999999997543 2334568999
Q ss_pred EeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec-CCCcEEEecc
Q 043900 712 FEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD-EEMMAHVSDF 790 (953)
Q Consensus 712 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kL~Df 790 (953)
||||++|+|.++++. ...+++..+..|+.||+.||+|||++ .++|+||||||+|||++ .++.+||+||
T Consensus 108 mEy~~gg~L~~~l~~----------~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DF 176 (290)
T 3fpq_A 108 TELMTSGTLKTYLKR----------FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDL 176 (290)
T ss_dssp EECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCT
T ss_pred EeCCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeC
Confidence 999999999999953 23689999999999999999999998 12399999999999998 4789999999
Q ss_pred ccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchh
Q 043900 791 GLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHV 870 (953)
Q Consensus 791 G~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 870 (953)
|+|+.... ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+.... ............
T Consensus 177 Gla~~~~~----~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~----~~~~~~i~~~~~ 247 (290)
T 3fpq_A 177 GLATLKRA----SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVK 247 (290)
T ss_dssp TGGGGCCT----TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCC
T ss_pred cCCEeCCC----CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcH----HHHHHHHHcCCC
Confidence 99985432 22334679999999999865 6999999999999999999999999643221 111111100000
Q ss_pred hhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 871 VDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 871 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... .+..+++++.+++.+||+.||++|||++|+++
T Consensus 248 ~~~--------------------------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 248 PAS--------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CGG--------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCC--------------------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 000 00112356889999999999999999999875
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-49 Score=477.03 Aligned_cols=445 Identities=20% Similarity=0.202 Sum_probs=297.7
Q ss_pred cCcEEEEEeCCCeeeeecCccccCCccCceeec-CCCccCcCCCccC---------------------------------
Q 043900 3 HQRVKILNLTSLKLAGSISPHVGNLSFLKVLLL-YNNSFNHGIPSEF--------------------------------- 48 (953)
Q Consensus 3 ~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~--------------------------------- 48 (953)
+++|+.|+|+++++.|.+|++|++|++|++|+| ++|.+++..|...
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578999999999999999999999999999999 9998887533221
Q ss_pred ------------------CCCCCCcEEeCCC--CccccccCcCccCCCCCcEEeccCccccc-----------------c
Q 043900 49 ------------------DRLQRLQVLALNN--NSIGGEIPANISSCSNLIQIRLFYNELVG-----------------K 91 (953)
Q Consensus 49 ------------------~~l~~L~~L~L~~--n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------~ 91 (953)
.....++.+.++. |++++ +|..|+++++|+.|+|++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1222344444444 78886 78888888888888888888886 2
Q ss_pred CCcccC--CccccceeeccccccccccCCcccCCCcccEEeccccc-ccc-cCCccccccc-------cccceecccccc
Q 043900 92 IPSELG--SLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNN-LDG-GIPDTFGWLK-------NLATLAMAENWL 160 (953)
Q Consensus 92 ~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l 160 (953)
+|..++ ++++|++|+|++|++.+.+|.+|++|++|++|+|++|+ +++ .+|..|+.++ +|++|+|++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 777766 77788888888877777777777777888888888877 776 6777666665 777777777777
Q ss_pred cCCCCC--cccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCC-CcEEEcccccccCcC
Q 043900 161 SGTIPS--SIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASN-LELFQADVNKLTGEV 237 (953)
Q Consensus 161 ~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~ 237 (953)
+ .+|. .+.++++|+.|+|++|+++ .+| .+ ..+++|+.|+|++|+++ .+|..+.++++ |+.|++++|+++..+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~-~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF-GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC-CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh-cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc
Confidence 7 6777 7777777777777777777 666 43 36777777777777777 66777777777 777777777776333
Q ss_pred CCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhcc-ccCcEEEcccCcccccCC
Q 043900 238 PYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLS-TTLEMLLLDNNKIFGNIP 316 (953)
Q Consensus 238 ~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~-~~L~~L~L~~N~i~~~~~ 316 (953)
..+ .... ++|+.|++++|++.+.+|
T Consensus 636 ~~~------------------------------------------------------~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 636 NIF------------------------------------------------------NAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SCC------------------------------------------------------CTTCSSCEEEEECCSSCTTTTSS
T ss_pred hhh------------------------------------------------------hccccCCCCEEECcCCcCCCccc
Confidence 221 1110 235666666666655443
Q ss_pred cc---cc--CCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCC
Q 043900 317 AA---IG--KFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLG 391 (953)
Q Consensus 317 ~~---~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~ 391 (953)
.. +. .+++|+.|+|++|.|+...+..+..+++|+.|+|++|+|+ .+|..+... .+..+.
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~---------------~~~~l~ 725 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP---------------KDGNYK 725 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC---------------TTSCCT
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc---------------cccccc
Confidence 22 12 3346788888888887433333457788888888888877 444433211 111233
Q ss_pred CCCCCcEEEcCCCccCCCCCcccc-CccccceeeeccCCcccCCCCccccCCCccceeeecC------CcccccCCCCcc
Q 043900 392 QYKTLTIIDLSDNNLTGTIPPQFL-GLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFE------NKLKGEIPSTLG 464 (953)
Q Consensus 392 ~l~~L~~L~L~~N~l~~~~p~~~~-~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~ 464 (953)
++++|+.|+|++|+|+ .+|..+. .....++.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..|.
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 4456777777777776 5666554 223344566666666665 566677777777777766 556666666666
Q ss_pred CCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCc
Q 043900 465 SCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLE 528 (953)
Q Consensus 465 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 528 (953)
.+++|+.|+|++|+| +.+|..+. ++|+.|||++|++....+..+.....+..+.|++|++.
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 666666666666666 35665554 46666666666666555555555555555555555543
No 24
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=3.1e-50 Score=432.71 Aligned_cols=259 Identities=20% Similarity=0.220 Sum_probs=207.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.+.|+..++||+|+||+||+|+++.+++.||||+++.... ..+|+.++++++|||||++++++. +++..|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~-----~~~~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVR-----EGPWVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence 3457888899999999999999999999999999974322 246999999999999999999964 347899
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC-cEEEe
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM-MAHVS 788 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kL~ 788 (953)
||||||+||+|.++++. ...+++.++..++.||+.||+|||++ +||||||||+|||++.+| .+||+
T Consensus 127 ivmEy~~gg~L~~~l~~----------~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~ 193 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQ----------MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALC 193 (336)
T ss_dssp EEECCCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEEC
T ss_pred EEEeccCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEe
Confidence 99999999999999952 23689999999999999999999999 999999999999999988 69999
Q ss_pred ccccceecCCCCCc---ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 789 DFGLARFLPLSPAQ---TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 789 DfG~a~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|||+|+.+...... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+...... ........
T Consensus 194 DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~ 272 (336)
T 4g3f_A 194 DFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASEP 272 (336)
T ss_dssp CCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHSC
T ss_pred eCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcCC
Confidence 99999987543221 122345799999999999999999999999999999999999999976433321 11111110
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhc
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILL 941 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~ 941 (953)
.... ..+..+++++.+++.+||+.||++|||+.|+++.|........
T Consensus 273 --~~~~---------------------------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~ 319 (336)
T 4g3f_A 273 --PPIR---------------------------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG 319 (336)
T ss_dssp --CGGG---------------------------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred --CCch---------------------------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhh
Confidence 0000 0011345678899999999999999999999999988776543
No 25
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.5e-50 Score=429.68 Aligned_cols=250 Identities=20% Similarity=0.299 Sum_probs=208.4
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
++|++.+.||+|+||+||+|++..+++.||||+++.. .....+.+.+|++++++++|||||++++++ .+++.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~~~ 106 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----QDDEK 106 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSSE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EeCCE
Confidence 5699999999999999999999999999999999642 234467899999999999999999999995 45588
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.|+||||++||+|.+++.. ...+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||
T Consensus 107 ~yivmEy~~gG~L~~~i~~----------~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl 173 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRK----------IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQI 173 (311)
T ss_dssp EEEEECCCTTEEHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEE
T ss_pred EEEEEecCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEE
Confidence 9999999999999999952 23689999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
+|||+|+.+............+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+ .+........
T Consensus 174 ~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-~~~~i~~~~~- 251 (311)
T 4aw0_A 174 TDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL-IFAKIIKLEY- 251 (311)
T ss_dssp CCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC-
T ss_pred EEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCC-
Confidence 99999998765444445556789999999999999999999999999999999999999997522111 1111111000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. +...++++.+++.+||+.||++|||++|+..
T Consensus 252 ---------~~----------------------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 252 ---------DF----------------------PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp ---------CC----------------------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred ---------CC----------------------CcccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence 00 0023456889999999999999999999753
No 26
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.7e-49 Score=425.79 Aligned_cols=281 Identities=21% Similarity=0.275 Sum_probs=202.9
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeE
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKAL 710 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 710 (953)
++|.+.++||+|+||+||+|++. ++.||||+++..... ...+..|+..+.+++|||||+++++|... .......++
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~--g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~-~~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKD-NGTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET--TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEE-CSSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC--CEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCceEEEE
Confidence 45788899999999999999984 468999999754322 22334566667788999999999998643 112246799
Q ss_pred EEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhC-----CCCCeEeecCCCCCeEecCCCcE
Q 043900 711 VFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHD-----CQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 711 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-----~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
|||||++|+|.++++. ..++|..+.+++.|++.||+|||++ ..++|+||||||+|||++.++.+
T Consensus 79 V~Ey~~~gsL~~~l~~-----------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~ 147 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNR-----------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC 147 (303)
T ss_dssp EEECCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCE
T ss_pred EecCCCCCcHHHHHHh-----------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCE
Confidence 9999999999999952 3589999999999999999999975 24589999999999999999999
Q ss_pred EEeccccceecCCCCCcc--cccccccccccccccccCCC------CCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 786 HVSDFGLARFLPLSPAQT--SSIDAKGSIGYIAPEYGLGS------EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
||+|||+|+......... ......||+.|||||++.+. .++.++|||||||++|||+||..||.........
T Consensus 148 Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p 227 (303)
T 3hmm_A 148 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 227 (303)
T ss_dssp EECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT
T ss_pred EEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcccccccc
Confidence 999999998775433221 22345799999999998764 4678999999999999999998887543222111
Q ss_pred HHHHHHhhCC-chhh-hhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHH
Q 043900 858 LHNFARMALP-DHVV-DIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQS 935 (953)
Q Consensus 858 ~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~ 935 (953)
+......... +... .+.+....+.. .......+++..+.+++.+||+.||++||||+||++.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~rp~~-------------p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~ 294 (303)
T 3hmm_A 228 YYDLVPSDPSVEEMRKVVCEQKLRPNI-------------PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ 294 (303)
T ss_dssp TTTTSCSSCCHHHHHHHHTTSCCCCCC-------------CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHH
T ss_pred chhcccccchHHHHHHHHhcccCCCCC-------------CccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHH
Confidence 1100000000 0000 00111111000 0011122566789999999999999999999999999999
Q ss_pred HHHH
Q 043900 936 IKNI 939 (953)
Q Consensus 936 i~~~ 939 (953)
+.+.
T Consensus 295 l~~~ 298 (303)
T 3hmm_A 295 LSQQ 298 (303)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8753
No 27
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=9.5e-50 Score=440.77 Aligned_cols=250 Identities=22% Similarity=0.276 Sum_probs=207.8
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeE
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKAL 710 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 710 (953)
+.|++.++||+|+||.||+|+++.+++.||||+++.......+.+.+|+.+|++++|||||+++++|. .++..||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~i 225 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELWV 225 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEE-----ECCEEEE
Confidence 56999999999999999999999999999999998666566677899999999999999999999964 3478999
Q ss_pred EEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEecc
Q 043900 711 VFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDF 790 (953)
Q Consensus 711 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 790 (953)
|||||+||+|.++++ ...+++.++..|+.||+.||+|||++ +||||||||+|||++.+|.+||+||
T Consensus 226 VmEy~~gG~L~~~i~-----------~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DF 291 (423)
T 4fie_A 226 VMEFLEGGALTDIVT-----------HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDF 291 (423)
T ss_dssp EEECCTTEEHHHHHH-----------HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCC
T ss_pred EEeCCCCCcHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecC
Confidence 999999999999985 23589999999999999999999999 9999999999999999999999999
Q ss_pred ccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchh
Q 043900 791 GLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHV 870 (953)
Q Consensus 791 G~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 870 (953)
|+|+.+.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... ..........+..
T Consensus 292 Gla~~~~~~~--~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~~~~~- 366 (423)
T 4fie_A 292 GFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDNLPPR- 366 (423)
T ss_dssp TTCEECCSSC--CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCCC-
T ss_pred ccceECCCCC--ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcCCCCC-
Confidence 9999774332 2334567999999999999999999999999999999999999999752211 1111111111100
Q ss_pred hhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 871 VDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 871 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+ .....+++++.+++.+||+.||++|||++|+++
T Consensus 367 -------~--------------------~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 367 -------L--------------------KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -------C--------------------SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------C--------------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0 000123457889999999999999999999876
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.9e-49 Score=464.27 Aligned_cols=482 Identities=19% Similarity=0.207 Sum_probs=377.9
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
-+.++++|+++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..|+.|+++++|++|+|++|
T Consensus 8 ~~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 8 GVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ceEECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 346889999998 666554 79999999999999888899999999999999999999888899999999999999999
Q ss_pred ccccccCCcccCCCcccEEeccccccccc-CCccccccccccceecccccccCCCC-CcccccccceEEecCCccccccc
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGG-IPDTFGWLKNLATLAMAENWLSGTIP-SSIFNISSITAFDAGMNQLQGVI 188 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~ 188 (953)
++++..|.+|+++++|++|+|++|++++. .|..|+.+++|++|++++|++.+.+| ..+.++++|++|++++|++++..
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 99987777799999999999999999863 57789999999999999999444555 68999999999999999999888
Q ss_pred ccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccc
Q 043900 189 PLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLC 268 (953)
Q Consensus 189 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 268 (953)
|..+. .+++|+.|++++|.+.......+..+++|+.|++++|++++....- ..
T Consensus 165 ~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------~~ 217 (549)
T 2z81_A 165 SQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP--------------------------LP 217 (549)
T ss_dssp TTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC--------------------------CS
T ss_pred hhhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc--------------------------cc
Confidence 88776 7999999999999987433333467899999999999998752100 00
Q ss_pred cccccccccEEeccCCcccccCChhhhh---ccccCcEEEcccCcccccC------CccccCCCCCCEEEeecCccccc-
Q 043900 269 SLTNSTRLNRLLINANNFGGLLPACISN---LSTTLEMLLLDNNKIFGNI------PAAIGKFVNLQRLEMWNNRLSGT- 338 (953)
Q Consensus 269 ~l~~~~~L~~L~l~~n~~~~~~p~~~~~---~~~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~L~~N~i~~~- 338 (953)
.....+.|+.|++++|.+.+..+..+.. ..++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+...
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence 0112344555555555555444433321 1246777777777765431 12346677788888888876532
Q ss_pred ----CCcCccCCCCCCeEEeccccccCCCCCCC-CCc-eeeEEEccCCcCCCCCC---ccCCCCCCCcEEEcCCCccCCC
Q 043900 339 ----IPPAIGELQNLRELRLQRNKFLGNIPPSI-GNL-KVFNLDLSCNFLQGSIP---SSLGQYKTLTIIDLSDNNLTGT 409 (953)
Q Consensus 339 ----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l-~l~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~ 409 (953)
.+..+...++|+.|++++|++. .+|..+ ..+ .+++|++++|.+++.+| ..++.+++|++|+|++|++++
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 375 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS- 375 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-
T ss_pred hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-
Confidence 1222344567888888888886 566554 334 57888888888887664 347889999999999999984
Q ss_pred CCc--cccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccc
Q 043900 410 IPP--QFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSL 487 (953)
Q Consensus 410 ~p~--~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 487 (953)
++. ..+.....++.|++++|+++ .+|..+..+++|++|++++|+++ .+|..+. ++|++|+|++|+|++.+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---- 447 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---- 447 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----
Confidence 432 23344456779999999999 68889999999999999999998 5565443 68999999999999743
Q ss_pred cCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCC-CCcccccccccccCCcCCCCC
Q 043900 488 SSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPI-EGVFKNATITSVLGNLKLCGG 554 (953)
Q Consensus 488 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lcg~ 554 (953)
..+++|++|+|++|+|+ .+|. ...+++|+.|+|++|++++.+|. ...++.+....+.+|++.|.+
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 57899999999999999 6776 46799999999999999998886 356677788889999988874
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-49 Score=462.91 Aligned_cols=457 Identities=18% Similarity=0.214 Sum_probs=350.3
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
+.||++++++. .+|..+. ++|++|+|++|+++++.|.+|.++++|++|+|++|+|++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46888888887 7888776 78899999999998877788888999999999999988777888888899999999999
Q ss_pred cccccCCcccCCccccceeecccccccc-ccCCcccCCCcccEEecccccccccCCccccccccc--cceecccccc--c
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTG-SIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNL--ATLAMAENWL--S 161 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~ 161 (953)
+|+ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++ ..|..+++| ++|+|++|++ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 888 56655 78888999999988886 367888888889999998888874 457777777 8888888888 6
Q ss_pred CCCCCcccccc-cceEEecCCcccccccccccccccccccEEEeeCcc-------ccCCCCCCCcCCCCCcEEEcccccc
Q 043900 162 GTIPSSIFNIS-SITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQ-------LTGAIPPAISNASNLELFQADVNKL 233 (953)
Q Consensus 162 ~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l 233 (953)
+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 67777777765 345667777777776666665667777777777776 444333 556666666666666555
Q ss_pred cCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccc
Q 043900 234 TGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFG 313 (953)
Q Consensus 234 ~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~ 313 (953)
++.. +.+. +.... .++|++|++++|++++
T Consensus 233 ~~~~------------------------------------------------~~~~-~~~~~--~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 233 TWNS------------------------------------------------FIRI-LQLVW--HTTVWYFSISNVKLQG 261 (520)
T ss_dssp EHHH------------------------------------------------HHHH-HHHHH--TSSCSEEEEEEEEEES
T ss_pred CHHH------------------------------------------------HHHH-HHHhh--hCcccEEEeecccccC
Confidence 4210 0000 01111 1367888888888877
Q ss_pred cCCccc-----cCCCCCCEEEeecCcccccCC-cCccCC---CCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCC
Q 043900 314 NIPAAI-----GKFVNLQRLEMWNNRLSGTIP-PAIGEL---QNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQ 383 (953)
Q Consensus 314 ~~~~~~-----~~l~~L~~L~L~~N~i~~~~~-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~ 383 (953)
.+|..+ .++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+ .+++|++++|.++
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccC
Confidence 777777 7788888888888888 344 455544 67888888888876422 11333 4678888888888
Q ss_pred CCCCccCCCCCCCcEEEcCCCccCC--CCCccccCccccceeeeccCCcccCCCCc-cccCCCccceeeecCCcccccCC
Q 043900 384 GSIPSSLGQYKTLTIIDLSDNNLTG--TIPPQFLGLSWLLIGLDLSRNQLTGSIPS-EVGNLKNLEVLDVFENKLKGEIP 460 (953)
Q Consensus 384 ~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~l~~L~ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p 460 (953)
+..|..++.+++|++|+|++|++++ .+|..+..+ ..++.|++++|++++.+|. .|..+++|+.|++++|++++..|
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 8888889999999999999999985 344445444 4566899999999874554 58889999999999999988887
Q ss_pred CCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCcc-ccccccCceEeccCCcCcccCCC
Q 043900 461 STLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEF-LVGFQLLENLNLSNNNLEGMVPI 533 (953)
Q Consensus 461 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~p~ 533 (953)
..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++|++++ +|.. +..+++|+.|++++|++++..+.
T Consensus 417 ~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 417 RCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 7765 79999999999999 788888899999999999999995 5554 88999999999999999987653
No 30
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4.4e-49 Score=412.98 Aligned_cols=247 Identities=22% Similarity=0.318 Sum_probs=189.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||+||+|++..+++.||+|+++.. .......+.+|++++++++|||||++++++ .+++
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~ 86 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----KSKD 86 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EECC
Confidence 36899999999999999999999999999999999642 233456789999999999999999999995 3457
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..|+||||+ +|+|.+++.. ...+++.++..++.||+.||+|||++ +|+||||||+|||+++++.+|
T Consensus 87 ~~~ivmEy~-~g~L~~~l~~----------~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vk 152 (275)
T 3hyh_A 87 EIIMVIEYA-GNELFDYIVQ----------RDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVK 152 (275)
T ss_dssp EEEEEEECC-CEEHHHHHHH----------SCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEE
T ss_pred EEEEEEeCC-CCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEE
Confidence 899999999 6899999853 23689999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||+|+...... .....+||+.|||||++.+..+ +.++||||+||++|||+||+.||.+... .......
T Consensus 153 l~DFGla~~~~~~~---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~-----~~~~~~i 224 (275)
T 3hyh_A 153 IADFGLSNIMTDGN---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-----PVLFKNI 224 (275)
T ss_dssp ECCSSCC------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH
T ss_pred EeecCCCeecCCCC---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHH
Confidence 99999998764322 2234579999999999998876 5799999999999999999999975211 1111110
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..... . .+...++++.+++.+||+.||++|||++|+++
T Consensus 225 --------~~~~~-~-------------------~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 225 --------SNGVY-T-------------------LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp --------HHTCC-C-------------------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred --------HcCCC-C-------------------CCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 00000 0 00023456889999999999999999999986
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-46 Score=454.02 Aligned_cols=528 Identities=21% Similarity=0.183 Sum_probs=364.5
Q ss_pred EeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcccc
Q 043900 10 NLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELV 89 (953)
Q Consensus 10 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 89 (953)
|=++.++. +||+.+- +++++|||++|+|+++.|.+|.++++|++|||++|+|++..|++|.++++|++|+|++|+|+
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 33444554 7777553 47899999999999988889999999999999999999777788999999999999999999
Q ss_pred ccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccccccccc-CCccccccccccceecccccccCCCCCcc
Q 043900 90 GKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGG-IPDTFGWLKNLATLAMAENWLSGTIPSSI 168 (953)
Q Consensus 90 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 168 (953)
+..+..|.++++|++|+|++|++++..+.+|++|++|++|+|++|++++. .|..++.+++|++|+|++|+|++..|..+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 77777899999999999999999977777899999999999999999753 57888999999999999999987777877
Q ss_pred cccccce----EEecCCcccccccccccccccccccEEEeeCccccC-CCCCCCcCCCCCcEEEcccccccCc-------
Q 043900 169 FNISSIT----AFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTG-AIPPAISNASNLELFQADVNKLTGE------- 236 (953)
Q Consensus 169 ~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~------- 236 (953)
..+.+++ .++++.|.++...+..+ ....+..+++.+|.... ..+..+..+..++...+..+.....
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cchhhhhhhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 7766543 68899999985444333 34567788888886542 2334566777777776654433221
Q ss_pred CCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCC
Q 043900 237 VPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIP 316 (953)
Q Consensus 237 ~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~ 316 (953)
...+.....+....+..+..... .......+.....+..+.+.++.+....+ +... ..++.|++.+|.+....+
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~-~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYY---LDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN-FGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSC---EEECTTTTGGGTTCSEEEEESCEEEECGG--GGSC-CCCSEEEEESCEESSCCC
T ss_pred ccccccccchhhhhhhhhhhccc---ccchhhhhhhhcccccccccccccccccc--cccc-hhhhhhhcccccccCcCc
Confidence 11122233344444433322211 11112233445566667776666654432 2222 467777777777764433
Q ss_pred ccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCC--CCCCC-CCceeeEEEccCCcCCCCCCccCCCC
Q 043900 317 AAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGN--IPPSI-GNLKVFNLDLSCNFLQGSIPSSLGQY 393 (953)
Q Consensus 317 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~-~~l~l~~L~L~~N~l~~~~p~~~~~l 393 (953)
. .+..|+.+++++|.+.. +..+..+++|+.|++++|.+... .+..+ ....++.++++.|.+.. .+..+..+
T Consensus 346 ~---~l~~L~~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 346 L---KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp C---BCTTCCEEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred c---cchhhhhcccccccCCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence 2 34567777777777653 23345677777777777777532 22222 22356677777777663 45566777
Q ss_pred CCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCccc-ccCCCCccCCccccEE
Q 043900 394 KTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLK-GEIPSTLGSCKKLEQL 472 (953)
Q Consensus 394 ~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L 472 (953)
++|+.+++++|.+....+...+.....++.++++.|.+++..+..+..++.|+.|+|++|++. +..|..|..+++|++|
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 777777777777665655555555555667777777777777777777777777777777643 3466777777777777
Q ss_pred EccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCCCC-cc-cccccccccCCcC
Q 043900 473 EMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEG-VF-KNATITSVLGNLK 550 (953)
Q Consensus 473 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~~-~~~~~~~~~~n~~ 550 (953)
+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++.+|..- .+ .++....+.+||+
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 777777777777777777777777777777777777777777777777777777777766531 22 3455566677777
Q ss_pred CCCC
Q 043900 551 LCGG 554 (953)
Q Consensus 551 lcg~ 554 (953)
.|.|
T Consensus 580 ~C~C 583 (635)
T 4g8a_A 580 ACTC 583 (635)
T ss_dssp CCSG
T ss_pred cccC
Confidence 7764
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-48 Score=464.87 Aligned_cols=432 Identities=18% Similarity=0.256 Sum_probs=351.8
Q ss_pred CCcEEeCCCCccccccCcCccCCCCCcEEeccCcccc------c------cCCcccCCccccceeeccccccccccCCcc
Q 043900 53 RLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELV------G------KIPSELGSLSKIEHLSVSVNNLTGSIPSSL 120 (953)
Q Consensus 53 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 120 (953)
+++.|+|++|.++|.+|.+|+++++|+.|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence 4555555555555555555555555555555555441 1 222222 44555 6666666665555544
Q ss_pred cC-------------------CCcccEEecc--cccccccCCccccccccccceecccccccCC----------------
Q 043900 121 GN-------------------LSSINTLFLT--DNNLDGGIPDTFGWLKNLATLAMAENWLSGT---------------- 163 (953)
Q Consensus 121 ~~-------------------L~~L~~L~L~--~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 163 (953)
+. ...++.+.+. +|++++ +|..|+.+++|++|+|++|++++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 41 1223333333 689997 899999999999999999999975
Q ss_pred -CCCccc--ccccceEEecCCcccccccccccccccccccEEEeeCcc-ccC-CCCCCCcCC------CCCcEEEccccc
Q 043900 164 -IPSSIF--NISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQ-LTG-AIPPAISNA------SNLELFQADVNK 232 (953)
Q Consensus 164 -~p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~L~~N~ 232 (953)
+|..+. ++++|++|+|++|++.+.+|..+. .+++|++|++++|+ +++ .+|..++.+ ++|+.|++++|+
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 999999 999999999999999999998876 89999999999999 987 788888876 899999999988
Q ss_pred ccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCCh--hhhhccccCcEEEcccCc
Q 043900 233 LTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPA--CISNLSTTLEMLLLDNNK 310 (953)
Q Consensus 233 l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~--~~~~~~~~L~~L~L~~N~ 310 (953)
++. +|. .+..+ ++|+.|++++|+
T Consensus 317 l~~------------------------------------------------------ip~~~~l~~l-~~L~~L~L~~N~ 341 (636)
T 4eco_A 317 LKT------------------------------------------------------FPVETSLQKM-KKLGMLECLYNQ 341 (636)
T ss_dssp CSS------------------------------------------------------CCCHHHHTTC-TTCCEEECCSCC
T ss_pred CCc------------------------------------------------------cCchhhhccC-CCCCEEeCcCCc
Confidence 873 233 44444 579999999999
Q ss_pred ccccCCccccCCCCCCEEEeecCcccccCCcCccCCCC-CCeEEeccccccCCCCCCCCCc---eeeEEEccCCcCCCCC
Q 043900 311 IFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQN-LRELRLQRNKFLGNIPPSIGNL---KVFNLDLSCNFLQGSI 386 (953)
Q Consensus 311 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l---~l~~L~L~~N~l~~~~ 386 (953)
++|.+| .|..+++|+.|++++|.++ .+|..|..+++ |++|++++|+++ .+|..++.. .+++|++++|.+++..
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 998888 9999999999999999999 88999999999 999999999999 788888776 4899999999999999
Q ss_pred CccCC-------CCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCc-cccCC-------Cccceeeec
Q 043900 387 PSSLG-------QYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPS-EVGNL-------KNLEVLDVF 451 (953)
Q Consensus 387 p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~-~~~~l-------~~L~~L~Ls 451 (953)
|..|. .+++|++|+|++|+++ .+|..++.....++.|+|++|+++ .+|. .+..+ ++|+.|+|+
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence 99998 8889999999999999 788887766667789999999999 4554 44433 399999999
Q ss_pred CCcccccCCCCcc--CCccccEEEccCccccCCCCccccCCCCCcEEEC------CCCcccccCCccccccccCceEecc
Q 043900 452 ENKLKGEIPSTLG--SCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDL------SQNNLSGKIPEFLVGFQLLENLNLS 523 (953)
Q Consensus 452 ~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~l~l~ 523 (953)
+|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|+
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 99999 7888887 99999999999999997 8999999999999999 5688999999999999999999999
Q ss_pred CCcCcccCCCCCcccccccccccCCcCCCC
Q 043900 524 NNNLEGMVPIEGVFKNATITSVLGNLKLCG 553 (953)
Q Consensus 524 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg 553 (953)
+|++ +.+|.. .++.+....+.+|+..|-
T Consensus 575 ~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 575 SNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred CCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 9999 677765 336777777888877664
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-47 Score=461.36 Aligned_cols=365 Identities=21% Similarity=0.303 Sum_probs=297.3
Q ss_pred cccceeeccc--cccccccCCcccCCCcccEEecccccccc-----------------cCCcccc--ccccccceecccc
Q 043900 100 SKIEHLSVSV--NNLTGSIPSSLGNLSSINTLFLTDNNLDG-----------------GIPDTFG--WLKNLATLAMAEN 158 (953)
Q Consensus 100 ~~L~~L~Ls~--N~l~~~~p~~~~~L~~L~~L~L~~N~l~~-----------------~~~~~~~--~l~~L~~L~L~~N 158 (953)
..++.+.+.. |++++ +|..|++|++|++|+|++|++++ .+|+.++ .+++|++|+|++|
T Consensus 423 l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 3455555554 88886 78888889999999999998886 3788876 8999999999999
Q ss_pred cccCCCCCcccccccceEEecCCcc-ccc-ccccccccccc-------cccEEEeeCccccCCCCC--CCcCCCCCcEEE
Q 043900 159 WLSGTIPSSIFNISSITAFDAGMNQ-LQG-VIPLDFGFTLQ-------NLQFFSVFENQLTGAIPP--AISNASNLELFQ 227 (953)
Q Consensus 159 ~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~~l~-------~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~ 227 (953)
++.+.+|..+.++++|+.|+|++|+ +++ .+|..+. .++ +|+.|+|++|+++ .+|. .++++++|+.|+
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 8888889889999999999999998 887 7777664 344 8888888888888 6777 788888888888
Q ss_pred cccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcc
Q 043900 228 ADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLD 307 (953)
Q Consensus 228 L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~ 307 (953)
+++|+++ .+|.+ ..+ ++|+.|+|+
T Consensus 580 Ls~N~l~-~lp~~------------------------------------------------------~~L-~~L~~L~Ls 603 (876)
T 4ecn_A 580 CVHNKVR-HLEAF------------------------------------------------------GTN-VKLTDLKLD 603 (876)
T ss_dssp CTTSCCC-BCCCC------------------------------------------------------CTT-SEESEEECC
T ss_pred CCCCCcc-cchhh------------------------------------------------------cCC-CcceEEECc
Confidence 8888877 22222 122 467777777
Q ss_pred cCcccccCCccccCCCC-CCEEEeecCcccccCCcCccCCCC--CCeEEeccccccCCCCCCC---C---CceeeEEEcc
Q 043900 308 NNKIFGNIPAAIGKFVN-LQRLEMWNNRLSGTIPPAIGELQN--LRELRLQRNKFLGNIPPSI---G---NLKVFNLDLS 378 (953)
Q Consensus 308 ~N~i~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~---~l~l~~L~L~ 378 (953)
+|+++ .+|..+..+++ |+.|+|++|.|+ .+|..+..++. |+.|+|++|++++.+|... + ...++.|+|+
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 77777 66777777777 888888888887 67777776654 8888888888887666433 2 2257889999
Q ss_pred CCcCCCCCCcc-CCCCCCCcEEEcCCCccCCCCCccccCccc-------cceeeeccCCcccCCCCcccc--CCCcccee
Q 043900 379 CNFLQGSIPSS-LGQYKTLTIIDLSDNNLTGTIPPQFLGLSW-------LLIGLDLSRNQLTGSIPSEVG--NLKNLEVL 448 (953)
Q Consensus 379 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-------~l~~L~ls~N~l~~~~~~~~~--~l~~L~~L 448 (953)
+|.++ .+|.. +..+++|+.|+|++|+|+ .+|..++.... .++.|+|++|+|+ .+|..+. .+++|+.|
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 99998 45554 458999999999999999 88888776553 6789999999999 7888887 99999999
Q ss_pred eecCCcccccCCCCccCCccccEEEccC------ccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEec
Q 043900 449 DVFENKLKGEIPSTLGSCKKLEQLEMQG------NFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNL 522 (953)
Q Consensus 449 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l 522 (953)
+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|+| +.+|..+. ++|+.|+|
T Consensus 759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL 834 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI 834 (876)
T ss_dssp ECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred EeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence 999999996 899999999999999976 889999999999999999999999999 68898876 69999999
Q ss_pred cCCcCcccCC
Q 043900 523 SNNNLEGMVP 532 (953)
Q Consensus 523 ~~N~l~~~~p 532 (953)
++|++....+
T Consensus 835 s~N~l~~i~~ 844 (876)
T 4ecn_A 835 ADNPNISIDV 844 (876)
T ss_dssp CSCTTCEEEC
T ss_pred CCCCCCccCh
Confidence 9999986554
No 34
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=6.1e-49 Score=417.66 Aligned_cols=243 Identities=23% Similarity=0.250 Sum_probs=190.3
Q ss_pred cCCcccCcccccceeeEEEEEEc---CCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILD---QGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
++|++.+.||+|+||+||+|+.. .+++.||+|+++... ......+.+|++++++++|||||++++++. ++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-----~~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQ-----TE 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEE-----ET
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEE-----EC
Confidence 57999999999999999999974 456789999996322 223446888999999999999999999954 44
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..|+|||||+||+|.+++.. ...+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~----------~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~v 165 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSK----------EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHI 165 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCE
T ss_pred CEEEEEEEcCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCE
Confidence 789999999999999999952 23689999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+|+...... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+ .+......
T Consensus 166 Kl~DFGla~~~~~~~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~- 241 (304)
T 3ubd_A 166 KLTDFGLSKESIDHE--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE-TMTMILKA- 241 (304)
T ss_dssp EEESSEEEEC-------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHC-
T ss_pred EecccccceeccCCC--ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH-HHHHHHcC-
Confidence 999999998653222 23334679999999999999999999999999999999999999997532111 01111100
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
.. . .+..+++++.+++.+||+.||++|||+
T Consensus 242 -----------~~-~-------------------~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 242 -----------KL-G-------------------MPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp -----------CC-C-------------------CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred -----------CC-C-------------------CCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 00 0 001234568899999999999999995
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-46 Score=450.50 Aligned_cols=512 Identities=20% Similarity=0.184 Sum_probs=424.5
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
..++.|||++|++.+-.+.+|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999998555568999999999999999999988899999999999999999999766778999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccc-cCCcccCCCcccEEecccccccccCCcccccccccc----ceecccc
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGS-IPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLA----TLAMAEN 158 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N 158 (953)
++|+|++..+..|+++++|++|+|++|++++. +|..++++++|++|+|++|+|++..+..|..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999977777899999999999999999753 578889999999999999999988999999888766 5788999
Q ss_pred cccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCcc------ccCCCCCCCcCCCCCcEEEccccc
Q 043900 159 WLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQ------LTGAIPPAISNASNLELFQADVNK 232 (953)
Q Consensus 159 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~N~ 232 (953)
.++ .++........+..+++++|......+...+..+..++...+..+. +.......+..+..+....+..+.
T Consensus 212 ~l~-~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCC-EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred ccc-ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 998 4555555666788999999987755555555578888877775543 333445566777778777777654
Q ss_pred cc----CcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEccc
Q 043900 233 LT----GEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDN 308 (953)
Q Consensus 233 l~----~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~ 308 (953)
.. +....+.....++.+.+..+.+.. +..+.....++.|++.+|.+.+..+..+ ..|+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~ 358 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTS 358 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEE--------CGGGGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEES
T ss_pred hcccccchhhhhhhhccccccccccccccc--------ccccccchhhhhhhcccccccCcCcccc----hhhhhccccc
Confidence 43 233445556778888888877654 3345566789999999999887655432 5789999999
Q ss_pred CcccccCCccccCCCCCCEEEeecCccc--ccCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCC
Q 043900 309 NKIFGNIPAAIGKFVNLQRLEMWNNRLS--GTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGS 385 (953)
Q Consensus 309 N~i~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~ 385 (953)
|.+... ..+..+++|+.|++++|.+. +..+..+..+.+|+.|+++.|.+... +..+..+ .++.+++++|.....
T Consensus 359 n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 359 NKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEEST
T ss_pred ccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccc
Confidence 998743 34567899999999999986 34567778899999999999999854 4445444 689999998887755
Q ss_pred CC-ccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcc-cCCCCccccCCCccceeeecCCcccccCCCCc
Q 043900 386 IP-SSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQL-TGSIPSEVGNLKNLEVLDVFENKLKGEIPSTL 463 (953)
Q Consensus 386 ~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 463 (953)
.+ ..|..+++++.++++.|.+.+..|.. +.....++.|++++|++ .+..|..|..+++|++|+|++|+|++..|..|
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~-~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccccccccccccccccccccccccccccc-cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 44 56889999999999999999655554 44455667999999985 44678999999999999999999999999999
Q ss_pred cCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCcccccc-ccCceEeccCCcCcccCC
Q 043900 464 GSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGF-QLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 464 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~p 532 (953)
.++++|++|+|++|+|++..|..|..+++|++|||++|+|++..|..+..+ ++|+.|+|++|+|++...
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999999999999999999999999999999988 689999999999987544
No 36
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=6.8e-48 Score=412.26 Aligned_cols=257 Identities=21% Similarity=0.327 Sum_probs=191.0
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-------
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY------- 702 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------- 702 (953)
++|++.+.||+|+||+||+|+++.+++.||||+++... ....+.+.+|++++++++|||||++++++.....
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 45899999999999999999999999999999997433 3445788999999999999999999999754321
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
......|+|||||++|+|.+++..... ....++..++.|+.||+.||+|||++ +|+||||||+|||++.+
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~-------~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~ 154 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCT-------IEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMD 154 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCS-------GGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTT
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCC
Confidence 123357999999999999999964322 12356777899999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCc----------ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcc
Q 043900 783 MMAHVSDFGLARFLPLSPAQ----------TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMF 852 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~ 852 (953)
+.+||+|||+|+.+...... ......+||+.|||||++.+..|+.++|||||||++|||++ ||....
T Consensus 155 ~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~ 231 (299)
T 4g31_A 155 DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM 231 (299)
T ss_dssp CCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH
T ss_pred CcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc
Confidence 99999999999877543211 12234569999999999999999999999999999999996 775311
Q ss_pred cCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 853 EGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+. ..... .+.+... ........+...+++.+||+.||++|||+.|+++
T Consensus 232 ~~----~~~~~--------~~~~~~~-------------------p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 232 ER----VRTLT--------DVRNLKF-------------------PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HH----HHHHH--------HHHTTCC-------------------CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HH----HHHHH--------HHhcCCC-------------------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 10 00000 0000000 0111233455778999999999999999999986
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=440.38 Aligned_cols=458 Identities=22% Similarity=0.218 Sum_probs=355.8
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
++|++++|+++. +|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 579999999997 776665 89999999999999777788999999999999999999888899999999999999999
Q ss_pred ccccccCCcccCCCcccEEecccccccc-cCCccccccccccceecccccccCCCCCcccccccc--eEEecCCccc--c
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDG-GIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSI--TAFDAGMNQL--Q 185 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 185 (953)
+|+ .+|.. .+++|++|+|++|++++ ..|+.|+.+++|++|+|++|++++ ..+..+++| +.|++++|++ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56655 88999999999999986 467899999999999999999874 356666666 7777777777 5
Q ss_pred cccccccccccc-cccEEEeeCccccCCCC-CCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCc
Q 043900 186 GVIPLDFGFTLQ-NLQFFSVFENQLTGAIP-PAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSN 263 (953)
Q Consensus 186 ~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 263 (953)
+..|..+. .+. +...+++++|++.+.++ ..+.++++|+.|++++|......
T Consensus 154 ~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------------- 206 (520)
T 2z7x_B 154 KEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-------------------------- 206 (520)
T ss_dssp SCCTTTTT-TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT--------------------------
T ss_pred cccccccc-ccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc--------------------------
Confidence 55555443 222 23345566666554333 24555666666666555411000
Q ss_pred ccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCcccc---CCCCCCEEEeecCcccccCC
Q 043900 264 LNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIG---KFVNLQRLEMWNNRLSGTIP 340 (953)
Q Consensus 264 ~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~L~~N~i~~~~~ 340 (953)
..+.+.+| .+..+ ++|+.|++++|.+.+..+..+. ..++|++|++++|.+++.+|
T Consensus 207 --------------------~~~~~~~~-~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 207 --------------------SYFLSILA-KLQTN-PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp --------------------HHHHHHHH-GGGGC-TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred --------------------ceeecchh-hhccc-cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc
Confidence 00222222 33333 4677777777776543222211 24689999999999999999
Q ss_pred cCc-----cCCCCCCeEEeccccccCCCC-CCCC----CceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCC
Q 043900 341 PAI-----GELQNLRELRLQRNKFLGNIP-PSIG----NLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTI 410 (953)
Q Consensus 341 ~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~----~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 410 (953)
..+ +.+++|+.+++++|.+ .+| ..+. +..++.|++++|.+.... .+..+++|++|++++|++++.+
T Consensus 265 ~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~ 340 (520)
T 2z7x_B 265 FRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTV 340 (520)
T ss_dssp CCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred cchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhh
Confidence 998 9999999999999999 455 3332 346899999999987432 1368899999999999999888
Q ss_pred CccccCccccceeeeccCCcccC--CCCccccCCCccceeeecCCcccccCCC-CccCCccccEEEccCccccCCCCccc
Q 043900 411 PPQFLGLSWLLIGLDLSRNQLTG--SIPSEVGNLKNLEVLDVFENKLKGEIPS-TLGSCKKLEQLEMQGNFLQGPIPSSL 487 (953)
Q Consensus 411 p~~~~~~~~~l~~L~ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~ 487 (953)
|..+..+. .++.|++++|++++ .+|..|..+++|++|++++|++++.+|. .+..+++|++|+|++|++++..|..+
T Consensus 341 ~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 341 FENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 88876655 56699999999997 5667899999999999999999975665 58899999999999999998888777
Q ss_pred cCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCC-CCcccccccccccCCcCCCCC
Q 043900 488 SSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPI-EGVFKNATITSVLGNLKLCGG 554 (953)
Q Consensus 488 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lcg~ 554 (953)
. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.++. ...++.+....+.+|+..|.+
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 5 79999999999999 7888888999999999999999965443 345667777888999887763
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.2e-46 Score=440.24 Aligned_cols=451 Identities=20% Similarity=0.199 Sum_probs=286.9
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
+++++++|++++ +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|+.|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 566666666665 444332 56666666666666444456666666666666666666555666666666666666666
Q ss_pred ccccccCCcccCCCcccEEeccccccccc-CCccccccccccceecccccccCCCCCcccccccc--eEEecCCccc--c
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGG-IPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSI--TAFDAGMNQL--Q 185 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 185 (953)
+|+ .+|.. .+++|++|+|++|++++. .|+.|+++++|++|+|++|++++ ..+..+++| ++|++++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeeccccccc
Confidence 665 44444 566666666666666542 24566666666666666666653 233344444 6666666666 5
Q ss_pred cccccccccccc-cccEEEeeCccccCCCCC-CCcCCCCCcEEEcccccc-----cCcCCCCCCCCccceeeecccccCC
Q 043900 186 GVIPLDFGFTLQ-NLQFFSVFENQLTGAIPP-AISNASNLELFQADVNKL-----TGEVPYLEKPQRLSVFSITENSLGS 258 (953)
Q Consensus 186 ~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l-----~~~~~~l~~~~~L~~l~l~~n~l~~ 258 (953)
+..|..+. .+. ..-.+++++|.+.+.++. .+..+++|+.|++++|+. .+.++.
T Consensus 185 ~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~------------------- 244 (562)
T 3a79_B 185 GGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE------------------- 244 (562)
T ss_dssp SSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-------------------
T ss_pred ccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-------------------
Confidence 45554443 221 111445566665544332 344566666666666541 111111
Q ss_pred CCCCcccccccccccccccEEeccCCcccccC----ChhhhhccccCcEEEcccCcccccCCccc-----cCCCCCCEEE
Q 043900 259 RGHSNLNFLCSLTNSTRLNRLLINANNFGGLL----PACISNLSTTLEMLLLDNNKIFGNIPAAI-----GKFVNLQRLE 329 (953)
Q Consensus 259 ~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~----p~~~~~~~~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~ 329 (953)
+..++.|+.+++.++.+.+.. +..+. . .+|++|++++|.+++.+|..+ ..++.|+.++
T Consensus 245 -----------l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 245 -----------LTRGPTLLNVTLQHIETTWKCSVKLFQFFW-P-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp -----------HHSCSSCEEEEEEEEEECHHHHHHHHHHHT-T-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred -----------HhccCcceEEEecCCcCcHHHHHHHHHhhh-c-ccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 222233333333333332211 11111 1 367888888888877777766 5666666666
Q ss_pred eecCcccccCC-cCccC---CCCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCC
Q 043900 330 MWNNRLSGTIP-PAIGE---LQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDN 404 (953)
Q Consensus 330 L~~N~i~~~~~-~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 404 (953)
++.|.+ .+| ..+.. ..+|++|++++|.+..... .+.+ .+++|++++|.+++..|..++++++|++|+|++|
T Consensus 312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 666666 233 22222 2568888888888753221 1333 4678888888888888888888999999999999
Q ss_pred ccCCCCC---ccccCccccceeeeccCCcccCCCC-ccccCCCccceeeecCCcccccCCCCccCCccccEEEccCcccc
Q 043900 405 NLTGTIP---PQFLGLSWLLIGLDLSRNQLTGSIP-SEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQ 480 (953)
Q Consensus 405 ~l~~~~p---~~~~~~~~~l~~L~ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 480 (953)
++++ ++ ..+..+ ..++.|++++|++++.+| ..|..+++|++|++++|++++..|..+. ++|+.|+|++|+|+
T Consensus 388 ~l~~-~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 388 GLKN-FFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp CCCB-TTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred CcCC-cccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 9884 33 334433 456689999999987444 4588899999999999999887777665 78999999999999
Q ss_pred CCCCccccCCCCCcEEECCCCcccccCCcc-ccccccCceEeccCCcCcccCCC
Q 043900 481 GPIPSSLSSLKGLNVLDLSQNNLSGKIPEF-LVGFQLLENLNLSNNNLEGMVPI 533 (953)
Q Consensus 481 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~p~ 533 (953)
.+|..+..+++|++|+|++|+|++ +|.. +..+++|+.|++++|+++|..|.
T Consensus 464 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 677777799999999999999995 5555 88999999999999999987664
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=414.99 Aligned_cols=286 Identities=21% Similarity=0.226 Sum_probs=206.6
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeeccc-ccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGV-DYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-~~~~~~ 706 (953)
.++|++.+.||+|+||+||+|++..+++.||||+++.. .....+.+.+|+++|++++|||||++++++... .+.+..
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 35799999999999999999999999999999999643 234456788999999999999999999987543 244567
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..|+|||||+ |+|.+++.. ...+++.++..++.||+.||+|||++ |||||||||+|||++.++.+|
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~----------~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~K 198 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHS----------SQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELK 198 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTS----------SSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEE
T ss_pred EEEEEEeCCC-CCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEE
Confidence 8999999995 789999853 34699999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCC--CcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 787 VSDFGLARFLPLSP--AQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 787 L~DfG~a~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
|+|||+|+.+.... ........+||+.|||||++.+. .++.++||||+||++|||++|++||.+....+ .+.....
T Consensus 199 i~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~-~l~~I~~ 277 (398)
T 4b99_A 199 IGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVH-QLQLIMM 277 (398)
T ss_dssp ECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH-HHHHHHH
T ss_pred EeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHH-HHHHHHH
Confidence 99999998764322 22233456799999999998875 46899999999999999999999997632221 1111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
....... ......................+..........++++.+++.+||+.||++|||++|+++
T Consensus 278 ~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 278 VLGTPSP-AVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp HHCCCCG-GGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hcCCCCh-HHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 1111100 000000000000000000000000000000123457889999999999999999999876
No 40
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.7e-45 Score=404.83 Aligned_cols=200 Identities=24% Similarity=0.321 Sum_probs=169.7
Q ss_pred hhcCCcccCcccccceeeEEEEEEc---CCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILD---QGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 704 (953)
..++|++.+.||+|+||+||+|+++ .+++.||+|++.... ...++.+|+++++.+ +||||+++++++. +
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~-----~ 91 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFR-----K 91 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEE-----E
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEE-----E
Confidence 4678999999999999999999875 356789999986443 345678999999998 6999999999853 4
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC-C
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE-M 783 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~-~ 783 (953)
++..++||||+++|+|.+++. .+++.++..++.|++.||+|||++ ||+||||||+|||++.+ +
T Consensus 92 ~~~~~lvmE~~~g~~L~~~~~-------------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~ 155 (361)
T 4f9c_A 92 NDHVVIAMPYLEHESFLDILN-------------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLK 155 (361)
T ss_dssp TTEEEEEEECCCCCCHHHHHT-------------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTT
T ss_pred CCEEEEEEeCCCcccHHHHHc-------------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCC
Confidence 578999999999999999984 488999999999999999999999 99999999999999876 7
Q ss_pred cEEEeccccceecCCCCCc--------------------------ccccccccccccccccccCCC-CCCcccchHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQ--------------------------TSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGI 836 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~ 836 (953)
.+||+|||+|+........ ......+||+.|||||++.+. .|+.++||||+||
T Consensus 156 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~ 235 (361)
T 4f9c_A 156 KYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGV 235 (361)
T ss_dssp EEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHH
T ss_pred eEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHH
Confidence 9999999999876432211 112234699999999998876 4899999999999
Q ss_pred HHHHHHhCCCCCCCc
Q 043900 837 LLLELVTRKKPVDSM 851 (953)
Q Consensus 837 vl~elltg~~pf~~~ 851 (953)
++|||+||+.||...
T Consensus 236 il~ell~G~~Pf~~~ 250 (361)
T 4f9c_A 236 IFLSLLSGRYPFYKA 250 (361)
T ss_dssp HHHHHHHTCSSSSCC
T ss_pred HHHHHHHCCCCCCCC
Confidence 999999999999653
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.3e-44 Score=421.87 Aligned_cols=456 Identities=17% Similarity=0.158 Sum_probs=361.9
Q ss_pred CCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccE
Q 043900 49 DRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINT 128 (953)
Q Consensus 49 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~ 128 (953)
..+...+++|+++|+++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|++++..|++|+++++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 33445589999999999 6888765 89999999999999888889999999999999999999888999999999999
Q ss_pred EecccccccccCCccccccccccceecccccccC-CCCCcccccccceEEecCCcccccccccccccccccc--cEEEee
Q 043900 129 LFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSG-TIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNL--QFFSVF 205 (953)
Q Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~L~ 205 (953)
|+|++|+|+ .+|.. .+++|++|+|++|++++ ..|..+.++++|++|++++|++++. .+ ..+++| +.|+++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~-~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL-LPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT-GGGTTSCEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch-hhhhhceeeEEEee
Confidence 999999999 56665 89999999999999995 3468999999999999999999853 22 245666 999999
Q ss_pred Cccc--cCCCCCCCcCCC--CCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEec
Q 043900 206 ENQL--TGAIPPAISNAS--NLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLI 281 (953)
Q Consensus 206 ~N~l--~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l 281 (953)
+|++ ++..|..+..+. .+ .++++.|.+.+..+.. .+..+++|+.+++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~----------------------------~~~~l~~L~~L~l 228 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNM----------------------------SVNALGHLQLSNI 228 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEE----------------------------EESSEEEEEEEEE
T ss_pred cccccccccCcccccccCcceE-EEEecCccchhhhhhh----------------------------cccccceEEEecc
Confidence 9999 888888888776 33 5578888888754431 1122344555555
Q ss_pred cCCc-----ccccCChhhhhccccCcEEEcccCcccccC----CccccCCCCCCEEEeecCcccccCCcCc-----cCCC
Q 043900 282 NANN-----FGGLLPACISNLSTTLEMLLLDNNKIFGNI----PAAIGKFVNLQRLEMWNNRLSGTIPPAI-----GELQ 347 (953)
Q Consensus 282 ~~n~-----~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~ 347 (953)
++|. +.+ .+..+..+ ++|+.|+++++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++
T Consensus 229 ~~n~~~~~~l~~-~~~~l~~l-~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 229 KLNDENCQRLMT-FLSELTRG-PTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp ECCSTTHHHHHH-HHHHHHSC-SSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred cccccccchHHH-HHHHHhcc-CcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccch
Confidence 5553 111 12334444 57888888887765421 222 234589999999999998899887 7788
Q ss_pred CCCeEEeccccccCCCCC-C----CCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccce
Q 043900 348 NLRELRLQRNKFLGNIPP-S----IGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLI 422 (953)
Q Consensus 348 ~L~~L~L~~N~l~~~~p~-~----~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~ 422 (953)
.|+.++++.|.+ .+|. . +.+..+++|++++|.+.... ....+++|++|++++|++++.+|..+..+. .++
T Consensus 306 ~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~ 380 (562)
T 3a79_B 306 SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQ 380 (562)
T ss_dssp EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCC
T ss_pred heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccC-CCC
Confidence 888888888877 3442 2 23346899999999986432 126889999999999999988888776665 466
Q ss_pred eeeccCCcccCC--CCccccCCCccceeeecCCcccccCCC-CccCCccccEEEccCccccCCCCccccCCCCCcEEECC
Q 043900 423 GLDLSRNQLTGS--IPSEVGNLKNLEVLDVFENKLKGEIPS-TLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLS 499 (953)
Q Consensus 423 ~L~ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 499 (953)
.|++++|++++. +|..|.++++|+.|++++|++++.+|. .+..+++|++|+|++|+|++.+|..+. ++|++|+|+
T Consensus 381 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~ 458 (562)
T 3a79_B 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458 (562)
T ss_dssp EEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECC
T ss_pred EEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECC
Confidence 999999999963 357799999999999999999984554 588999999999999999988777665 799999999
Q ss_pred CCcccccCCccccccccCceEeccCCcCcccCCC-CCcccccccccccCCcCCCCC
Q 043900 500 QNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPI-EGVFKNATITSVLGNLKLCGG 554 (953)
Q Consensus 500 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lcg~ 554 (953)
+|+|+ .+|..+..+++|+.|++++|++++.++. ...++.+....+.+|++.|.+
T Consensus 459 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 99999 6888777999999999999999965554 455667777888999988873
No 42
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.3e-43 Score=408.43 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=198.1
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhh---HHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGA---FKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~---~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.++|++.++||+|+||+||+|+++.+++.||+|+++... ... ......++.+++.++|||||++++++ .
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f-----~ 262 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----H 262 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE-----E
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEE-----E
Confidence 357999999999999999999999999999999996321 111 22334456777888999999999995 4
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
+.+..|+|||||+||+|.+++.. ...+++..+..++.||+.||+|||++ |||||||||+|||++.+|
T Consensus 263 ~~~~lylVmEy~~GGdL~~~l~~----------~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G 329 (689)
T 3v5w_A 263 TPDKLSFILDLMNGGDLHYHLSQ----------HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHG 329 (689)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTS
T ss_pred ECCEEEEEEecCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCC
Confidence 55889999999999999999953 23689999999999999999999999 999999999999999999
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
.+||+|||+|+.+.... ....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||.+....+ .....
T Consensus 330 ~vKL~DFGlA~~~~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~--~~~i~ 403 (689)
T 3v5w_A 330 HVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEID 403 (689)
T ss_dssp CEEECCCTTCEECSSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC--HHHHH
T ss_pred CEEecccceeeecCCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--HHHHH
Confidence 99999999999775332 234579999999999864 579999999999999999999999997532221 11111
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCC-----HHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMN-----MTNVVR 931 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~evl~ 931 (953)
....... . ..+...++++.+++.+||+.||++|++ ++||.+
T Consensus 404 ~~i~~~~--------~--------------------~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 404 RMTLTMA--------V--------------------ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp HHHHHCC--------C--------------------CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HhhcCCC--------C--------------------CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 1100000 0 000123456889999999999999998 677654
No 43
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=7.8e-43 Score=382.46 Aligned_cols=285 Identities=31% Similarity=0.471 Sum_probs=227.3
Q ss_pred CHHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc
Q 043900 622 SYQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD 701 (953)
Q Consensus 622 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 701 (953)
++.++...+++|++.+.||+|+||.||+|++.+ ++.||||++........+.+.+|++++++++||||++++++|.
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--- 105 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD-GAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD--- 105 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTT-CCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECC---
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECC-CCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc---
Confidence 334455577899999999999999999999764 5689999997666666788999999999999999999999954
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE 781 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 781 (953)
..+..++||||+++|+|.+++..... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.
T Consensus 106 --~~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~ 174 (321)
T 2qkw_B 106 --ERNEMILIYKYMENGNLKRHLYGSDL------PTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDE 174 (321)
T ss_dssp --CTTCCEEEEECCTTCBTGGGSSSSCC------CSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECT
T ss_pred --CCCeEEEEEEcCCCCcHHHHHhccCC------CccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECC
Confidence 44778999999999999999964332 123689999999999999999999999 9999999999999999
Q ss_pred CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCC-ccHHH
Q 043900 782 EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGD-MNLHN 860 (953)
Q Consensus 782 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~-~~~~~ 860 (953)
++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .....
T Consensus 175 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~ 254 (321)
T 2qkw_B 175 NFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAE 254 (321)
T ss_dssp TCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHH
T ss_pred CCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHH
Confidence 99999999999987654333333344568999999999988999999999999999999999999997644332 22333
Q ss_pred HHHhhC-CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 861 FARMAL-PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 861 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
|..... .......+++.... ....+++.++.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 255 WAVESHNNGQLEQIVDPNLAD------------------KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp HTHHHHTTTCCCSSSSSSCTT------------------CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HhhhccccccHHHhcChhhcc------------------ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 322111 11122222222111 11235678899999999999999999999999999998764
No 44
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.5e-43 Score=411.63 Aligned_cols=253 Identities=22% Similarity=0.302 Sum_probs=207.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|+++.+++.||+|+++.......+.+.+|+++|+.++|||||++++++ .++...+
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~-----~~~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF-----EDDNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEE-----ECSSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEE-----EECCEEE
Confidence 46899999999999999999999999999999999876666677899999999999999999999995 4558899
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC--CcEEE
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE--MMAHV 787 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~--~~~kL 787 (953)
+|||||+||+|.+++... ...+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||
T Consensus 231 iv~E~~~gg~L~~~i~~~---------~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl 298 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADE---------HNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKL 298 (573)
T ss_dssp EEEECCCCCBHHHHHTCT---------TSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEE
T ss_pred EEEeecCCCcHHHHHHHh---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEE
Confidence 999999999999998532 23589999999999999999999999 99999999999999854 79999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
+|||+|+.+.... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+ .+.........
T Consensus 299 ~DFG~a~~~~~~~---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~-~~~~i~~~~~~ 374 (573)
T 3uto_A 299 IDFGLTAHLDPKQ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE-TLRNVKSCDWN 374 (573)
T ss_dssp CCCSSCEECCTTS---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCCC
T ss_pred eeccceeEccCCC---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HHHHHHhCCCC
Confidence 9999999875332 2334579999999999999999999999999999999999999997532211 01111000000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... .....+++++.+++.+||+.||++|||++|+++
T Consensus 375 ------------~~~----------------~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 375 ------------MDD----------------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp ------------CCS----------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ------------CCc----------------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 000 000123456889999999999999999999976
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-42 Score=395.27 Aligned_cols=387 Identities=25% Similarity=0.317 Sum_probs=195.7
Q ss_pred CCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCC-------------cEEeccCccccccC
Q 043900 26 NLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNL-------------IQIRLFYNELVGKI 92 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~ 92 (953)
+.++|++|++++|++ +.+|.+|+++++|++|++++|.+++.+|..++++.+| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 346666666666666 3466666666666666666666666666666666654 666666666663 3
Q ss_pred CcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccc
Q 043900 93 PSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNIS 172 (953)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 172 (953)
|.. .++|++|++++|++++ +|.. +++|++|++++|++++ ++.. .++|++|++++|++++ +| .+.+++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 331 2466666666666664 4533 2566666666666653 2221 1466666666666663 55 466666
Q ss_pred cceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeec
Q 043900 173 SITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSIT 252 (953)
Q Consensus 173 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~ 252 (953)
+|++|++++|++++ +|.. ..+|++|++++|++++ +| .++++++|+.|++++|++++.+..
T Consensus 154 ~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~------------- 213 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL------------- 213 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC-------------
T ss_pred CCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC-------------
Confidence 66666666666663 4432 2366666666666664 34 466666666666666666543211
Q ss_pred ccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeec
Q 043900 253 ENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWN 332 (953)
Q Consensus 253 ~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 332 (953)
+++|+.|++++|.++ .+| .++.+++|+.|++++
T Consensus 214 ---------------------------------------------~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 214 ---------------------------------------------PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred ---------------------------------------------cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence 124666666666665 344 366666666666666
Q ss_pred CcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCc
Q 043900 333 NRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPP 412 (953)
Q Consensus 333 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 412 (953)
|++++ +|.. .++|++|++++|++++ +|..+ ..+++|++++|.+++. |.. .++|+.|++++|++++ ++
T Consensus 247 N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~--~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~- 313 (454)
T 1jl5_A 247 NLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP--QSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC- 313 (454)
T ss_dssp SCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC-
T ss_pred CcCCc-cccc---ccccCEEECCCCcccc-cCccc--CcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc-
Confidence 66663 3332 2566666666666664 34332 2345566666666541 111 1467777777777763 22
Q ss_pred cccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccC--CCCccccCC
Q 043900 413 QFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQG--PIPSSLSSL 490 (953)
Q Consensus 413 ~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l 490 (953)
.....++.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.++..
T Consensus 314 ---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~- 381 (454)
T 1jl5_A 314 ---DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED- 381 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred ---CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence 223345567777777764 4443 466777777777776 4555 35677777777777776 45555443
Q ss_pred CCCcEEECCCCcccccCCccccccccCceEeccCCcCcc
Q 043900 491 KGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEG 529 (953)
Q Consensus 491 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 529 (953)
|+.|++.+.+|.. +++|+.|++++|++++
T Consensus 382 -------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 -------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -------EECCC---------------------------
T ss_pred -------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence 2345555555553 3567777777777776
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.9e-42 Score=395.30 Aligned_cols=393 Identities=18% Similarity=0.179 Sum_probs=258.9
Q ss_pred CceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccC-CcccCCccccceeecc
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKI-PSELGSLSKIEHLSVS 108 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls 108 (953)
-+.++.++++++. +|. + .++|++|+|++|.|++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|+
T Consensus 12 ~~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3567888888887 554 2 267888888888888777888888888888888888876333 5667788888888888
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCcc--ccccccccceecccccccCCCCCc-ccccccceEEecCCcccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDT--FGWLKNLATLAMAENWLSGTIPSS-IFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~ 185 (953)
+|++++..|.+|+++++|++|+|++|++++..+.. |..+++|++|+|++|++++..|.. +.++++|++|++++|+++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88887777777888888888888888777544333 666666666666666666444444 444444444444444444
Q ss_pred cccccccccccccccEEEeeCccccCCCCCCCcCC--CCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCc
Q 043900 186 GVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNA--SNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSN 263 (953)
Q Consensus 186 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 263 (953)
+..+..+..+ .+|+.|++++|.+.+..+....
T Consensus 168 -------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~--------------------- 201 (455)
T 3v47_A 168 -------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG--------------------- 201 (455)
T ss_dssp -------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------------
T ss_pred -------------------------ccChhhhhccccccccccccccCcccccchhhcc---------------------
Confidence 4444444433 4555566666555543321100
Q ss_pred ccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCC---CCCCEEEeecCcccccCC
Q 043900 264 LNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKF---VNLQRLEMWNNRLSGTIP 340 (953)
Q Consensus 264 ~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l---~~L~~L~L~~N~i~~~~~ 340 (953)
......+... ++|++|++++|++++..|..+... ++|+.|++++|.+.+.
T Consensus 202 ------------------------~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-- 254 (455)
T 3v47_A 202 ------------------------WEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-- 254 (455)
T ss_dssp ------------------------HHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC--
T ss_pred ------------------------cccccccccc-ceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc--
Confidence 0000001111 345666666666655555444332 4455555555544321
Q ss_pred cCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCC--CCCCcEEEcCCCccCCCCCccccCcc
Q 043900 341 PAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQ--YKTLTIIDLSDNNLTGTIPPQFLGLS 418 (953)
Q Consensus 341 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~~~ 418 (953)
. +..+.+....+..+.. .++|+.|++++|++++.+|..+..+.
T Consensus 255 ----------------------~-------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 255 ----------------------S-------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp ----------------------C-------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred ----------------------c-------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 0 0111122122222222 24566666666666655444444333
Q ss_pred ccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEEC
Q 043900 419 WLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDL 498 (953)
Q Consensus 419 ~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 498 (953)
.++.|++++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++..|.+|..+++|++|+|
T Consensus 300 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 300 -DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 3446667777776667778888999999999999999888889999999999999999999888999999999999999
Q ss_pred CCCcccccCCccccccccCceEeccCCcCcccCCCCC
Q 043900 499 SQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEG 535 (953)
Q Consensus 499 s~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 535 (953)
++|++++..+..+..+++|+.|++++|++++.+|...
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 9999998777778899999999999999999988543
No 47
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=378.99 Aligned_cols=269 Identities=23% Similarity=0.372 Sum_probs=218.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|.+.+.||+|+||+||+|++..+++.||+|++........+.+.+|++++++++||||++++++|.. +...+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-----DKRLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-----CCeeE
Confidence 4578999999999999999999999889999999977667778889999999999999999999999653 47789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++|+|.++++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 84 lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~D 151 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSM---------DSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVAD 151 (310)
T ss_dssp EEEECCTTCBHHHHHHHC---------CTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECC
T ss_pred EEEEecCCCcHHHHHHhc---------cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEee
Confidence 999999999999999632 23589999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcc------------cccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 790 FGLARFLPLSPAQT------------SSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 790 fG~a~~~~~~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
||.++......... ......||+.|+|||++.+..++.++||||||+++|||++|..||.........
T Consensus 152 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~ 231 (310)
T 3s95_A 152 FGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD 231 (310)
T ss_dssp CTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT
T ss_pred cccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH
Confidence 99998764332211 111456999999999999999999999999999999999999998753322111
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
.. .......+.. .+..+++++.+++.+||+.||++|||++|+++.|++++
T Consensus 232 ~~--------~~~~~~~~~~----------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~ 281 (310)
T 3s95_A 232 FG--------LNVRGFLDRY----------------------CPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR 281 (310)
T ss_dssp SS--------BCHHHHHHHT----------------------CCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred Hh--------hhhhcccccc----------------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 00 0000000000 00123456889999999999999999999999999999
Q ss_pred HHhccccc
Q 043900 938 NILLGHRI 945 (953)
Q Consensus 938 ~~~~~~~~ 945 (953)
....++..
T Consensus 282 ~~~~~~~~ 289 (310)
T 3s95_A 282 MHLAGHLP 289 (310)
T ss_dssp HHHHHCCC
T ss_pred HhccCccc
Confidence 88766543
No 48
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=3.7e-42 Score=378.16 Aligned_cols=290 Identities=33% Similarity=0.542 Sum_probs=231.1
Q ss_pred CCCCCcCHHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEE
Q 043900 616 NSFPNISYQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKIL 694 (953)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~ 694 (953)
.....+++.++....++|++.+.||+|+||.||+|++.+ ++.||||+++... ......+.+|++++++++||||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~ 93 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLAD-GTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 93 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSS-SCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecC-CCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence 445678999999999999999999999999999998664 5689999996433 22334688999999999999999999
Q ss_pred eeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 695 TACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 695 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
++|. .....++||||+++|+|.+++...... ...+++..+..++.|++.||+|||+.+.++|+||||||
T Consensus 94 ~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp 162 (326)
T 3uim_A 94 GFCM-----TPTERLLVYPYMANGSVASCLRERPES------QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKA 162 (326)
T ss_dssp EEEC-----CSSCCEEEEECCTTCBHHHHHHCCSTT------CCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSG
T ss_pred EEEe-----cCCceEEEEEeccCCCHHHHHHhcccc------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCch
Confidence 9964 346789999999999999999754322 34589999999999999999999998777999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCc---
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSM--- 851 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~--- 851 (953)
+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||+..
T Consensus 163 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 241 (326)
T 3uim_A 163 ANILLDEEFEAVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLA 241 (326)
T ss_dssp GGEEECTTCCEEECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHT
T ss_pred hhEEECCCCCEEeccCccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccc
Confidence 999999999999999999987653322 2333455999999999998889999999999999999999999999632
Q ss_pred ccCCccHHHHHHhhCCch-hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHH
Q 043900 852 FEGDMNLHNFARMALPDH-VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVV 930 (953)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl 930 (953)
...+.....+........ .....+...... ...+.+.++.+++.+||+.||++|||++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~li~~cl~~dP~~Rps~~ell 303 (326)
T 3uim_A 242 NDDDVMLLDWVKGLLKEKKLEALVDVDLQGN------------------YKDEEVEQLIQVALLCTQSSPMERPKMSEVV 303 (326)
T ss_dssp TTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS------------------CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHH
T ss_pred cccchhHHHHHHHHhhchhhhhhcChhhccc------------------cCHHHHHHHHHHHHHHhCcCCccCCCHHHHH
Confidence 122334444444433332 223222222211 1235677899999999999999999999999
Q ss_pred HHHHHH
Q 043900 931 RQLQSI 936 (953)
Q Consensus 931 ~~L~~i 936 (953)
+.|++.
T Consensus 304 ~~L~~~ 309 (326)
T 3uim_A 304 RMLEGD 309 (326)
T ss_dssp HHHHTS
T ss_pred HHhcCc
Confidence 999863
No 49
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=6.1e-42 Score=370.31 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=206.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||+||+|.+..+++.||+|++........+.+.+|+.++++++||||+++++++.. ++..+
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~ 93 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDELW 93 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-----CCEEE
Confidence 4679999999999999999999998889999999986665666788999999999999999999999643 46789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++|+|.+++.. ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 94 lv~e~~~~~~L~~~~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~D 159 (297)
T 3fxz_A 94 VVMEYLAGGSLTDVVTE-----------TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTD 159 (297)
T ss_dssp EEEECCTTCBHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECC
T ss_pred EEEECCCCCCHHHHHhh-----------cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEee
Confidence 99999999999999852 2588999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCch
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDH 869 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 869 (953)
||++........ ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ .........+.
T Consensus 160 fg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~- 235 (297)
T 3fxz_A 160 FGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LYLIATNGTPE- 235 (297)
T ss_dssp CTTCEECCSTTC--CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHHCSCC-
T ss_pred CCCceecCCccc--ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCCC-
Confidence 999987653322 23345699999999999999999999999999999999999999975321110 00000000000
Q ss_pred hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 870 VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 870 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...+..++..+.+++.+||+.||++|||++|+++
T Consensus 236 ----------------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 236 ----------------------------LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp ----------------------------CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ----------------------------CCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 0001123456889999999999999999999976
No 50
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=7.2e-42 Score=374.53 Aligned_cols=283 Identities=22% Similarity=0.298 Sum_probs=213.4
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||+||+|++. ++.||||+++.... ......+|+.++++++||||+++++++... .......
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~~~~ 97 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRG-TSVDVDL 97 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEE-CSSSEEE
T ss_pred chhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccC-CCCCceE
Confidence 3568999999999999999999986 46899999975433 334566799999999999999999997643 1223457
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhC-------CCCCeEeecCCCCCeEecC
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHD-------CQPPITHCDLKPSNVLLDE 781 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-------~~~~ivH~Dlkp~NIll~~ 781 (953)
++||||+++|+|.++++. ..+++..++.++.|++.||+|||+. +.++|+||||||+||+++.
T Consensus 98 ~lv~e~~~~g~L~~~l~~-----------~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~ 166 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKA-----------NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKN 166 (322)
T ss_dssp EEEEECCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECT
T ss_pred EEEEecCCCCCHHHHHHh-----------cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECC
Confidence 999999999999999952 2589999999999999999999975 1348999999999999999
Q ss_pred CCcEEEeccccceecCCCCCcccccccccccccccccccCC-----CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc
Q 043900 782 EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-----SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM 856 (953)
Q Consensus 782 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~ 856 (953)
++.+||+|||+++...............||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+......
T Consensus 167 ~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~ 246 (322)
T 3soc_A 167 NLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYM 246 (322)
T ss_dssp TCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCC
T ss_pred CCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhc
Confidence 99999999999988765444434445679999999999887 3566789999999999999999999986433321
Q ss_pred c-HHHHHHhhCC-chhhhhc-cccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 857 N-LHNFARMALP-DHVVDIV-DSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 857 ~-~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
. +......... ....+.. .....+. .........+++++.+++.+||+.||++|||++||++.|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L 313 (322)
T 3soc_A 247 LPFEEEIGQHPSLEDMQEVVVHKKKRPV-------------LRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERI 313 (322)
T ss_dssp CTTHHHHCSSCCHHHHHHHHTTSCCCCC-------------CCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred cchhhhhccCCchhhhhhhhhcccCCCC-------------ccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence 1 1111000000 0011100 0000000 001111224567799999999999999999999999999
Q ss_pred HHHHHH
Q 043900 934 QSIKNI 939 (953)
Q Consensus 934 ~~i~~~ 939 (953)
+++.+.
T Consensus 314 ~~l~~~ 319 (322)
T 3soc_A 314 TQMQRL 319 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 51
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=9.3e-41 Score=363.70 Aligned_cols=284 Identities=31% Similarity=0.476 Sum_probs=225.4
Q ss_pred CCCCcCHHHHHHhhcCCccc------CcccccceeeEEEEEEcCCCeEEEEEEeecc----chhhHHHHHHHHHHHhhcC
Q 043900 617 SFPNISYQNLYNATDGFASA------NEIGVGSFGSVYKGILDQGKTTVAVKVFNLL----HHGAFKSFIAECNTLKNIR 686 (953)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~------~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~ 686 (953)
+...+++.++..++++|... +.||+|+||.||+|.+. ++.||+|++... .....+.+.+|+.++++++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 88 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN--NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ 88 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESS--SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEEC--CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence 46788999999999998877 89999999999999974 458999998632 2344678999999999999
Q ss_pred CCCeeEEEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043900 687 HRNLVKILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP 766 (953)
Q Consensus 687 h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ 766 (953)
||||+++++++. ..+..++||||+++++|.+++..... ...+++..++.++.|++.||+|||+. +
T Consensus 89 h~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~i~~~i~~~l~~lH~~---~ 153 (307)
T 2nru_A 89 HENLVELLGFSS-----DGDDLCLVYVYMPNGSLLDRLSCLDG-------TPPLSWHMRCKIAQGAANGINFLHEN---H 153 (307)
T ss_dssp CTTBCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTGGG-------CCCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred CCCeEEEEEEEe-----cCCceEEEEEecCCCcHHHHHHhccC-------CCCCCHHHHHHHHHHHHHHHHHHhcC---C
Confidence 999999999964 34678999999999999999864321 23689999999999999999999999 9
Q ss_pred eEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCC
Q 043900 767 ITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKK 846 (953)
Q Consensus 767 ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~ 846 (953)
|+||||||+||+++.++.+||+|||.++...............||+.|+|||++.+ .++.++||||||+++|||++|..
T Consensus 154 i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~ 232 (307)
T 2nru_A 154 HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLP 232 (307)
T ss_dssp EECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCC
T ss_pred eecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999987654333333344569999999998765 58899999999999999999999
Q ss_pred CCCCcccCCccHHHHHHhh--CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC
Q 043900 847 PVDSMFEGDMNLHNFARMA--LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM 924 (953)
Q Consensus 847 pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP 924 (953)
||........ ...+.... ......+.++..... .....+.++.+++.+||+.||++||
T Consensus 233 p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~l~~li~~cl~~~p~~Rp 292 (307)
T 2nru_A 233 AVDEHREPQL-LLDIKEEIEDEEKTIEDYIDKKMND-------------------ADSTSVEAMYSVASQCLHEKKNKRP 292 (307)
T ss_dssp SBCTTBSSSB-TTHHHHHHHTTSCCHHHHSCSSCSC-------------------CCHHHHHHHHHHHHHHTCSSTTTSC
T ss_pred CcccCcchHH-HHHHHHHhhhhhhhhhhhccccccc-------------------cchHHHHHHHHHHHHHcCCCcccCc
Confidence 9976433321 11221111 111223333322211 1125567899999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 043900 925 NMTNVVRQLQSIKN 938 (953)
Q Consensus 925 t~~evl~~L~~i~~ 938 (953)
|++||++.|+++..
T Consensus 293 s~~~l~~~L~~l~~ 306 (307)
T 2nru_A 293 DIKKVQQLLQEMTA 306 (307)
T ss_dssp CHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998854
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.5e-41 Score=386.59 Aligned_cols=380 Identities=20% Similarity=0.208 Sum_probs=260.7
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCcccccc-CcCccCCCCCcEEeccCc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEI-PANISSCSNLIQIRLFYN 86 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~L~~n 86 (953)
.++.+++++. .+|. + .++|++|+|++|+|+++.|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4677777775 7777 3 378999999999999988999999999999999999997555 678999999999999999
Q ss_pred cccccCCcccCCccccceeeccccccccccCCc--ccCCCcccEEecccccccccCCcc-ccccccccceecccccccCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSS--LGNLSSINTLFLTDNNLDGGIPDT-FGWLKNLATLAMAENWLSGT 163 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~L~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 163 (953)
.+++..|..|+++++|++|+|++|++++..|.. |+++++|++|+|++|++++..|.. |..+++|++|+|++|++++.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 999888999999999999999999999755544 999999999999999999887876 89999999999999999988
Q ss_pred CCCccccc--ccceEEecCCcccccccccccc-------cccccccEEEeeCccccCCCCCCCcCC---CCCcEEEcccc
Q 043900 164 IPSSIFNI--SSITAFDAGMNQLQGVIPLDFG-------FTLQNLQFFSVFENQLTGAIPPAISNA---SNLELFQADVN 231 (953)
Q Consensus 164 ~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N 231 (953)
.|..+..+ .+|+.|++++|.+.+..+..+. ..+++|+.|++++|++++..|..+..+ ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 88888877 7899999999999865444321 245789999999999887777666544 78888888888
Q ss_pred cccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcc
Q 043900 232 KLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKI 311 (953)
Q Consensus 232 ~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i 311 (953)
.+.+..........+. ... +.. ...+.|+.|++++|.+.+..|..+..+ ++|+.|++++|++
T Consensus 250 ~~~~~~~~~~~~~~~~-------------~~~---~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l 311 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPD-------------NFT---FKG-LEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEI 311 (455)
T ss_dssp TTTSCCTTCCSSCCCC-------------TTT---TGG-GTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCC
T ss_pred cccccccchhhhccCc-------------ccc---ccc-ccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcc
Confidence 7765422111110000 000 000 012344555555555555544444444 3455555555555
Q ss_pred cccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCCCCccC
Q 043900 312 FGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSL 390 (953)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~ 390 (953)
++..|..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..+..+ .+++|+|++|.+++..+..|
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 54444455555555555555555554444555555555555555555554444444443 23444444444444333344
Q ss_pred CCCCCCcEEEcCCCccCCC
Q 043900 391 GQYKTLTIIDLSDNNLTGT 409 (953)
Q Consensus 391 ~~l~~L~~L~L~~N~l~~~ 409 (953)
..+++|++|+|++|.+++.
T Consensus 392 ~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCTTCCEEECCSSCBCCC
T ss_pred ccCCcccEEEccCCCcccC
Confidence 4444444444444444433
No 53
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=2.9e-41 Score=376.27 Aligned_cols=273 Identities=21% Similarity=0.365 Sum_probs=215.1
Q ss_pred hcCCcccCcccccceeeEEEEEEc-------CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhc-CCCCeeEEEeeeccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILD-------QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGV 700 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~-------~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 700 (953)
.++|++.+.||+|+||.||+|++. .++..||||+++.. .....+.+.+|+++++++ +||||++++++|.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC--
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc--
Confidence 467899999999999999999974 24457999999754 334567899999999999 8999999999964
Q ss_pred ccCCCCceeEEEeeccCCchhhccccCCcCCc------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 701 DYQGNDFKALVFEFMQNRSLEEWLHPITREDK------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
..+..++||||+++|+|.+++........ .......+++.+++.++.||+.||+|||+. +|+||||||
T Consensus 158 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp 231 (370)
T 2psq_A 158 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 231 (370)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred ---cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence 34678999999999999999975432100 011224589999999999999999999999 999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCccc
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFE 853 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~ 853 (953)
+|||++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||+| |+.||.....
T Consensus 232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~ 311 (370)
T 2psq_A 232 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV 311 (370)
T ss_dssp GGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred hhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence 999999999999999999997755443333444567899999999999999999999999999999999 9999975322
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
.+ .......... ...+..++.++.+++.+||+.||++|||+.|+++.|
T Consensus 312 ~~--~~~~~~~~~~------------------------------~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L 359 (370)
T 2psq_A 312 EE--LFKLLKEGHR------------------------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 359 (370)
T ss_dssp GG--HHHHHHTTCC------------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred HH--HHHHHhcCCC------------------------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence 11 1111110000 000113455789999999999999999999999999
Q ss_pred HHHHHHhcc
Q 043900 934 QSIKNILLG 942 (953)
Q Consensus 934 ~~i~~~~~~ 942 (953)
+.+......
T Consensus 360 ~~il~~~~~ 368 (370)
T 2psq_A 360 DRILTLTTN 368 (370)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999876543
No 54
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.8e-41 Score=368.28 Aligned_cols=265 Identities=28% Similarity=0.444 Sum_probs=205.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|.+.+.||+|+||.||+|++.. .||+|+++.. .....+.+.+|++++++++||||+++++++. .+.
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~~---~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~~ 105 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT------KDN 105 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSS
T ss_pred ccceEEEeEecCCCCeEEEEEEECC---EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------cCc
Confidence 4679999999999999999998754 5889988743 3445678999999999999999999999853 245
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 106 ~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl 173 (307)
T 3lb7_A 106 LAIVTQWCEGSSLYKHLHVQ---------ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKI 173 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTS---------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEE
T ss_pred EEEEEecCCCCcHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEE
Confidence 78999999999999999532 23689999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccC---CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL---GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+|||+++...............||+.|+|||++. +..++.++|||||||++|||++|+.||......+.........
T Consensus 174 ~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~ 253 (307)
T 3lb7_A 174 GDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRG 253 (307)
T ss_dssp CCCCSSCC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHT
T ss_pred ccCCCceecccccccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcC
Confidence 9999998654333333334456999999999875 6678999999999999999999999997543222111111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcc
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~ 942 (953)
......... ...+++++.+++.+||+.||++|||+.|+++.|+.+....++
T Consensus 254 ~~~~~~~~~---------------------------~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 254 YASPDLSKL---------------------------YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CCCCCSTTS---------------------------CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred CCCcchhhh---------------------------hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 111111000 012356789999999999999999999999999999877654
No 55
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=5e-41 Score=364.81 Aligned_cols=266 Identities=23% Similarity=0.373 Sum_probs=206.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhh--cCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKN--IRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||+||+|++. ++.||||++... ....+.+|.+++.. ++||||+++++++... ......
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSWQ--GENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEET--TEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEEC--CEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence 568999999999999999999983 568999998643 33455666666666 7999999999987543 334467
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHh--------hCCCCCeEeecCCCCCeEe
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLH--------HDCQPPITHCDLKPSNVLL 779 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIll 779 (953)
.++||||+++|+|.++++ ...+++..++.++.|++.||+||| +. +|+||||||+||++
T Consensus 81 ~~lv~e~~~~g~L~~~l~-----------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill 146 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQ-----------LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILV 146 (301)
T ss_dssp EEEEECCCTTCBHHHHHT-----------TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEE
T ss_pred eEEehhhccCCCHHHHHh-----------hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEE
Confidence 899999999999999994 235899999999999999999999 77 99999999999999
Q ss_pred cCCCcEEEeccccceecCCCCCcc--cccccccccccccccccCCC------CCCcccchHHHHHHHHHHHhC-------
Q 043900 780 DEEMMAHVSDFGLARFLPLSPAQT--SSIDAKGSIGYIAPEYGLGS------EVSINGDVYSYGILLLELVTR------- 844 (953)
Q Consensus 780 ~~~~~~kL~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDv~slG~vl~elltg------- 844 (953)
+.++.+||+|||+|+......... ......||+.|+|||++.+. .++.++|||||||++|||+||
T Consensus 147 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~ 226 (301)
T 3q4u_A 147 KKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIV 226 (301)
T ss_dssp CTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred cCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccc
Confidence 999999999999998765433221 12234699999999998877 556799999999999999999
Q ss_pred ---CCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCC
Q 043900 845 ---KKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPG 921 (953)
Q Consensus 845 ---~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 921 (953)
+.||......+................. .. ........++.++.+++.+||+.||+
T Consensus 227 ~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~~~l~~li~~cl~~dP~ 285 (301)
T 3q4u_A 227 EDYKPPFYDVVPNDPSFEDMRKVVCVDQQRP----NI-----------------PNRWFSDPTLTSLAKLMKECWYQNPS 285 (301)
T ss_dssp CCCCCTTTTTSCSSCCHHHHHHHHTTSCCCC----CC-----------------CGGGGGSHHHHHHHHHHHHHCCSSGG
T ss_pred ccccccccccCCCCcchhhhhHHHhccCCCC----CC-----------------ChhhccCccHHHHHHHHHHHhhcChh
Confidence 7787665444433333322221111000 00 00011124677899999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 043900 922 DRMNMTNVVRQLQSI 936 (953)
Q Consensus 922 ~RPt~~evl~~L~~i 936 (953)
+|||++||++.|+++
T Consensus 286 ~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 286 ARLTALRIKKTLTKI 300 (301)
T ss_dssp GSCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHhcc
Confidence 999999999999986
No 56
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.1e-41 Score=368.55 Aligned_cols=279 Identities=23% Similarity=0.362 Sum_probs=210.4
Q ss_pred hcCCcccCcccccceeeEEEEE----EcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGI----LDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~----~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||+||+|+ ...+++.||||+++.......+.+.+|++++++++||||++++++|... +.
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH---HH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CC
Confidence 4678999999999999999999 4567789999999877777778899999999999999999999987432 22
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~---------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~ 153 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHK---------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 153 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCG---------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEE
T ss_pred CceEEEEEeCCCCCHHHHHHhcc---------cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeE
Confidence 45799999999999999996322 2489999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++........ .......++..|+|||++.+..++.++||||||+++|||+||..||...... .......
T Consensus 154 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~~~ 230 (295)
T 3ugc_A 154 KIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGN 230 (295)
T ss_dssp EECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHHCT
T ss_pred EEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhhcC
Confidence 99999999876443221 2223344788899999999999999999999999999999999998642111 0000000
Q ss_pred hCCch-h-hhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhc
Q 043900 865 ALPDH-V-VDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILL 941 (953)
Q Consensus 865 ~~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~ 941 (953)
..... . ....+. + ....+...+..+++++.+++.+||+.||++|||++|+++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 231 DKQGQMIVFHLIEL-L--------------KNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp TCCTHHHHHHHHHH-H--------------HTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred ccccchhHHHHHHH-H--------------hccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 00000 0 000000 0 0000111112456779999999999999999999999999999987654
No 57
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=9.6e-42 Score=381.71 Aligned_cols=261 Identities=26% Similarity=0.376 Sum_probs=210.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|.+.+.||+|+||.||+|++..+++.||||+++... ......+.+|++++++++||||++++++|. ..+..
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~ 187 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----QKQPI 187 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC-----SSSSC
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----cCCCc
Confidence 457889999999999999999999888899999987432 334457889999999999999999999964 33678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++|+|.++++.. ...+++.+++.++.|++.||+|||+. +|+||||||+|||++.++.+||+
T Consensus 188 ~lv~e~~~~g~L~~~l~~~---------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~ 255 (377)
T 3cbl_A 188 YIVMELVQGGDFLTFLRTE---------GARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKIS 255 (377)
T ss_dssp EEEEECCTTCBHHHHHHHH---------GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred EEEEEcCCCCCHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEEC
Confidence 9999999999999999632 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||+++...............+++.|+|||++.+..++.++|||||||++|||+| |..||....... .........
T Consensus 256 DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~--~~~~~~~~~- 332 (377)
T 3cbl_A 256 DFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ--TREFVEKGG- 332 (377)
T ss_dssp CGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH--HHHHHHTTC-
T ss_pred cCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC-
Confidence 9999986543221122222346788999999998899999999999999999999 999997532211 111111000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
+...+..+++++.+++.+||+.||++|||++|+++.|+++++.
T Consensus 333 -----------------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 333 -----------------------------RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp -----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 0000112456789999999999999999999999999999875
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-40 Score=377.83 Aligned_cols=408 Identities=23% Similarity=0.263 Sum_probs=244.9
Q ss_pred cCcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCC-------------cEEeCCCCccccccC
Q 043900 3 HQRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRL-------------QVLALNNNSIGGEIP 69 (953)
Q Consensus 3 ~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~p 69 (953)
..+++.|+++++++ |.+|+++++|++|++|++++|++++.+|.+++++++| ++|++++|+++ .+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 35788999999999 7999999999999999999999999999999999875 99999999999 566
Q ss_pred cCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCcccccccc
Q 043900 70 ANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKN 149 (953)
Q Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (953)
.. .++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .|+.+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 53 4799999999999996 7754 3799999999999984 4432 2799999999999995 67 5999999
Q ss_pred ccceecccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcc
Q 043900 150 LATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQAD 229 (953)
Q Consensus 150 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 229 (953)
|++|++++|+++ .+|..+ .+|++|++++|++++ +| .+ ..+++|++|++++|++++ +|... ++|++|+++
T Consensus 155 L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~-~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~ 223 (454)
T 1jl5_A 155 LKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-EL-QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAG 223 (454)
T ss_dssp CCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CC-TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECC
T ss_pred CCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cc-cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECc
Confidence 999999999999 467654 589999999999996 66 44 489999999999999995 45433 589999999
Q ss_pred cccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccC
Q 043900 230 VNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNN 309 (953)
Q Consensus 230 ~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N 309 (953)
+|.++..+ .+..+++|+.+++++|. +.+ +|.. +++|+.|++++|
T Consensus 224 ~n~l~~lp-~~~~l~~L~~L~l~~N~------------------------------l~~-l~~~----~~~L~~L~l~~N 267 (454)
T 1jl5_A 224 NNILEELP-ELQNLPFLTTIYADNNL------------------------------LKT-LPDL----PPSLEALNVRDN 267 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSC------------------------------CSS-CCSC----CTTCCEEECCSS
T ss_pred CCcCCccc-ccCCCCCCCEEECCCCc------------------------------CCc-cccc----ccccCEEECCCC
Confidence 99998443 44444444444443333 332 1211 135666666666
Q ss_pred cccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCcc
Q 043900 310 KIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSS 389 (953)
Q Consensus 310 ~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~ 389 (953)
++++ +|.. +++|+.|++++|.+++. |.. .++|++|++++|++++ ++
T Consensus 268 ~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~------------------------i~-- 313 (454)
T 1jl5_A 268 YLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS------------------------LC-- 313 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE------------------------EC--
T ss_pred cccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc------------------------cc--
Confidence 6654 3322 25566666666666642 111 1455666666555542 11
Q ss_pred CCCC-CCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccc--cCCCCccCC
Q 043900 390 LGQY-KTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKG--EIPSTLGSC 466 (953)
Q Consensus 390 ~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l 466 (953)
.+ ++|++|++++|++++ +|.. ...++.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.
T Consensus 314 --~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~- 381 (454)
T 1jl5_A 314 --DLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED- 381 (454)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred --CCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence 12 467788888888874 5554 245667888888887 4555 46888999999999987 56665543
Q ss_pred ccccEEEccCccccCCCCccccCCCCCcEEECCCCcccc--cCCccccccccCceEeccCCcCcccCCCC
Q 043900 467 KKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSG--KIPEFLVGFQLLENLNLSNNNLEGMVPIE 534 (953)
Q Consensus 467 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 534 (953)
|+.|.+.+.+|.. +++|+.||+++|++++ .+|.. |+.|.+.+|.+.+.+|..
T Consensus 382 -------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 382 -------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp -------EECCC----------------------------------------------------------
T ss_pred -------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 3457777777764 5789999999999987 56643 566778888888877643
No 59
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.1e-40 Score=364.61 Aligned_cols=262 Identities=22% Similarity=0.255 Sum_probs=212.4
Q ss_pred CCcCHHHHHHhhcC----------CcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCC
Q 043900 619 PNISYQNLYNATDG----------FASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHR 688 (953)
Q Consensus 619 ~~~~~~~~~~~~~~----------~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ 688 (953)
+.++++++..+++. |...+.||+|+||.||+|++..+++.||||+++.......+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45778888777754 67778999999999999999988889999999866666677899999999999999
Q ss_pred CeeEEEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeE
Q 043900 689 NLVKILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPIT 768 (953)
Q Consensus 689 niv~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 768 (953)
||+++++++.. .+..++||||+++++|.+++.. ..+++..+..++.|++.||+|||+. +|+
T Consensus 103 niv~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~-----------~~l~~~~~~~i~~qi~~~L~~LH~~---~iv 163 (321)
T 2c30_A 103 NVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQ-----------VRLNEEQIATVCEAVLQALAYLHAQ---GVI 163 (321)
T ss_dssp TBCCEEEEEEE-----TTEEEEEECCCCSCBHHHHHTT-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred CcceEEEEEEE-----CCEEEEEEecCCCCCHHHHHHh-----------cCCCHHHHHHHHHHHHHHHHHHHHC---Cee
Confidence 99999999653 3678999999999999999852 2589999999999999999999999 999
Q ss_pred eecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCC
Q 043900 769 HCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPV 848 (953)
Q Consensus 769 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf 848 (953)
||||||+||+++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 164 H~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf 241 (321)
T 2c30_A 164 HRDIKSDSILLTLDGRVKLSDFGFCAQISKDV--PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPY 241 (321)
T ss_dssp CCCCSGGGEEECTTCCEEECCCTTCEECCSSS--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred cCCCCHHHEEECCCCcEEEeeeeeeeecccCc--cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999998764322 2223456999999999999999999999999999999999999999
Q ss_pred CCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHH
Q 043900 849 DSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTN 928 (953)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e 928 (953)
...... ..........+. .. ......++++.+++.+||+.||++|||++|
T Consensus 242 ~~~~~~--~~~~~~~~~~~~--------~~--------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~e 291 (321)
T 2c30_A 242 FSDSPV--QAMKRLRDSPPP--------KL--------------------KNSHKVSPVLRDFLERMLVRDPQERATAQE 291 (321)
T ss_dssp TTSCHH--HHHHHHHHSSCC--------CC--------------------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCCHH--HHHHHHhcCCCC--------Cc--------------------CccccCCHHHHHHHHHHccCChhhCcCHHH
Confidence 753211 111111100000 00 000123456889999999999999999999
Q ss_pred HHH
Q 043900 929 VVR 931 (953)
Q Consensus 929 vl~ 931 (953)
+++
T Consensus 292 ll~ 294 (321)
T 2c30_A 292 LLD 294 (321)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
No 60
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=370.98 Aligned_cols=266 Identities=23% Similarity=0.371 Sum_probs=209.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCC---eEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGK---TTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|++..++ ..||||+++.. .....+.+.+|++++++++||||++++++|.. +
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 122 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR-----G 122 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG-----G
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----C
Confidence 356889999999999999999997443 45999999753 34456789999999999999999999999643 4
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.++++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~ 190 (325)
T 3kul_A 123 RLAMIVTEYMENGSLDTFLRTH---------DGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVC 190 (325)
T ss_dssp GCCEEEEECCTTCBHHHHHHTT---------TTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred CccEEEeeCCCCCcHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCE
Confidence 6789999999999999999532 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 786 HVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |..||......+ ......
T Consensus 191 kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~ 268 (325)
T 3kul_A 191 KVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--VISSVE 268 (325)
T ss_dssp EECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHHHHH
T ss_pred EECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHH
Confidence 99999999877543222 22233446788999999998999999999999999999999 999997532211 111010
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhccc
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGH 943 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~ 943 (953)
.... ......+++++.+++.+||+.||++|||++||++.|+.+.+...+.
T Consensus 269 ~~~~------------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~ 318 (325)
T 3kul_A 269 EGYR------------------------------LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESL 318 (325)
T ss_dssp TTCC------------------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC--
T ss_pred cCCC------------------------------CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcccc
Confidence 0000 0001134567899999999999999999999999999998776554
Q ss_pred c
Q 043900 944 R 944 (953)
Q Consensus 944 ~ 944 (953)
+
T Consensus 319 ~ 319 (325)
T 3kul_A 319 R 319 (325)
T ss_dssp -
T ss_pred c
Confidence 4
No 61
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=3.5e-41 Score=366.21 Aligned_cols=264 Identities=26% Similarity=0.384 Sum_probs=199.8
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||+||+|++. ++.||||++.... ....+.+.+|++++++++||||+++++++. ...
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~ 107 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEWH--GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT-----QPP 107 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----STT
T ss_pred ChhHceeeeEeecCCCeEEEEEEEC--CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----ECC
Confidence 3467899999999999999999874 4589999986432 344567899999999999999999999964 346
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC--eEeecCCCCCeEecCCCc
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP--ITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~ 784 (953)
..++||||+++|+|.+++..... ...+++..++.++.|++.||+|||+. + |+||||||+||+++.++.
T Consensus 108 ~~~lv~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~ 177 (309)
T 3p86_A 108 NLSIVTEYLSRGSLYRLLHKSGA-------REQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYT 177 (309)
T ss_dssp CCEEEEECCTTCBHHHHHHSTTH-------HHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCC
T ss_pred ceEEEEecCCCCcHHHHHhhcCC-------CCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCc
Confidence 78999999999999999964321 12489999999999999999999998 8 999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||+++..... ........||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .......
T Consensus 178 ~kL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~--~~~~~~~ 253 (309)
T 3p86_A 178 VKVCDFGLSRLKAST--FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ--VVAAVGF 253 (309)
T ss_dssp EEECCCC-------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH--HHHHHHH
T ss_pred EEECCCCCCcccccc--ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHh
Confidence 999999999865322 122334569999999999999999999999999999999999999997532211 1000000
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcc
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~ 942 (953)
.... ...+..+++++.+++.+||+.||++|||++|+++.|+.+.+....
T Consensus 254 ~~~~-----------------------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p 302 (309)
T 3p86_A 254 KCKR-----------------------------LEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVP 302 (309)
T ss_dssp SCCC-----------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC----
T ss_pred cCCC-----------------------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCC
Confidence 0000 000012345688999999999999999999999999998765433
No 62
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3.5e-41 Score=368.62 Aligned_cols=254 Identities=22% Similarity=0.303 Sum_probs=204.1
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||+||+|++..+++.||+|+++... ....+.+.+|+.+++.++||||+++++++. .++..
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCeE
Confidence 468999999999999999999999888999999996433 223466889999999999999999999964 44788
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 81 ~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~ 147 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEP----------DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKIS 147 (323)
T ss_dssp EEEEECCTTEEGGGGSBT----------TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred EEEEEcCCCCcHHHHHhh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEE
Confidence 999999999999999952 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||+++.+.............||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+......
T Consensus 148 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~ 227 (323)
T 3tki_A 148 DFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY 227 (323)
T ss_dssp CCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTT
T ss_pred EeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccccc
Confidence 9999987643333333345679999999999988775 788999999999999999999997643332222222211100
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ....++.++.+++.+||+.||++|||++|+++
T Consensus 228 ~~------------------------------~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 228 LN------------------------------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp ST------------------------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CC------------------------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 00 00123456789999999999999999999976
No 63
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=5.7e-41 Score=374.16 Aligned_cols=282 Identities=23% Similarity=0.317 Sum_probs=219.8
Q ss_pred cCHHHHHHhhcCCcccCcccccceeeEEEEEE-----cCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhc-CCCCeeEE
Q 043900 621 ISYQNLYNATDGFASANEIGVGSFGSVYKGIL-----DQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNI-RHRNLVKI 693 (953)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~ 693 (953)
+.........++|++.+.||+|+||.||+|++ ..+++.||||+++.. .....+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 34455555678899999999999999999994 455689999999753 334457799999999999 79999999
Q ss_pred EeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcc----------------------------------------
Q 043900 694 LTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKT---------------------------------------- 733 (953)
Q Consensus 694 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~---------------------------------------- 733 (953)
+++|.. .+...++||||+++|+|.++++........
T Consensus 92 ~~~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECS----TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeec----CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 999743 335589999999999999999754321000
Q ss_pred ----------------cCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEeccccceecC
Q 043900 734 ----------------EEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLP 797 (953)
Q Consensus 734 ----------------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~ 797 (953)
......+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 244 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY 244 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence 00122389999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCchhhhhccc
Q 043900 798 LSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPDHVVDIVDS 876 (953)
Q Consensus 798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (953)
............||+.|+|||++.+..++.++|||||||++|||+| |+.||......+. ............
T Consensus 245 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~~~~~------- 316 (359)
T 3vhe_A 245 KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRRLKEGTRMR------- 316 (359)
T ss_dssp SCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHHHHTCCCC-------
T ss_pred ccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-HHHHHHcCCCCC-------
Confidence 4444444455668999999999999999999999999999999998 9999975332211 111111100000
Q ss_pred cccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHh
Q 043900 877 TLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 877 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~ 940 (953)
.+..+++++.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 317 -----------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 317 -----------------------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp -----------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 00023456889999999999999999999999999988653
No 64
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=4.1e-41 Score=367.98 Aligned_cols=249 Identities=20% Similarity=0.286 Sum_probs=203.8
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||.||+|++..+++.||||++... .....+.+.+|+++++.++||||+++++++. ...
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 87 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIE-----TEK 87 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----ECC
Confidence 456899999999999999999999888889999999643 3445677889999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~----------~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~k 154 (328)
T 3fe3_A 88 TLYLIMEYASGGEVFDYLVA----------HGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIK 154 (328)
T ss_dssp EEEEEECCCTTCBHHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEE
T ss_pred EEEEEEECCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEE
Confidence 89999999999999999852 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCC-cccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVS-INGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||+++...... ......||+.|+|||++.+..++ .++||||+||++|||++|+.||.+... .......
T Consensus 155 l~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i 226 (328)
T 3fe3_A 155 IADFGFSNEFTVGG---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL-----KELRERV 226 (328)
T ss_dssp ECSTTCCGGGSSSC---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH
T ss_pred EeeccCceecCCCC---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHH
Confidence 99999998664322 23445699999999999888775 789999999999999999999975321 1111100
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..... . .+...++++.+++.+||+.||++|||++|+++
T Consensus 227 --------~~~~~-~-------------------~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 227 --------LRGKY-R-------------------IPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp --------HHCCC-C-------------------CCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred --------HhCCC-C-------------------CCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00000 0 00012456889999999999999999999976
No 65
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.2e-41 Score=362.59 Aligned_cols=264 Identities=20% Similarity=0.361 Sum_probs=206.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++... .....+.+.+|+.++++++||||+++++++. .++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~ 84 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDE-----EDD 84 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEE-----CSS
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeee-----eCC
Confidence 45799999999999999999999988899999998532 3344578899999999999999999999954 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 85 ~~~lv~e~~~g~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~k 151 (294)
T 4eqm_A 85 CYYLVMEYIEGPTLSEYIES----------HGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLK 151 (294)
T ss_dssp EEEEEEECCCSCBHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred eEEEEEeCCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEE
Confidence 89999999999999999952 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+++...... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||......... ........
T Consensus 152 l~Dfg~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-~~~~~~~~ 229 (294)
T 4eqm_A 152 IFDFGIAKALSETS-LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIA-IKHIQDSV 229 (294)
T ss_dssp ECCCSSSTTC--------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHH-HHHHSSCC
T ss_pred EEeCCCcccccccc-ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHhhccC
Confidence 99999998654322 12233456999999999999999999999999999999999999999753221100 00000000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-CHHHHHHHHHHHHHHh
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-NMTNVVRQLQSIKNIL 940 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~evl~~L~~i~~~~ 940 (953)
+.... .....+++.+.+++.+||+.||++|| +++++.+.|+++....
T Consensus 230 ~~~~~---------------------------~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~ 277 (294)
T 4eqm_A 230 PNVTT---------------------------DVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN 277 (294)
T ss_dssp CCHHH---------------------------HSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred CCcch---------------------------hcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence 00000 00113456789999999999999998 9999999998875443
No 66
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=369.33 Aligned_cols=252 Identities=22% Similarity=0.275 Sum_probs=195.6
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
..++|++.+.||+|+||+||+|++..+++.||||++.... ......+.+|++++++++||||+++++++. ..+.
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~-----~~~~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLE-----TANK 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----eCCE
Confidence 3578999999999999999999999989999999996433 233567889999999999999999999964 3478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++|+|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||++++++.+||
T Consensus 83 ~~lv~E~~~gg~L~~~l~~----------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL 149 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIIS----------QDRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKL 149 (347)
T ss_dssp EEEEEECCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEE
T ss_pred EEEEEeCCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEE
Confidence 9999999999999999852 23589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
+|||++....... ........||+.|+|||++.+..+ +.++||||+||++|||++|..||.+.... ......
T Consensus 150 ~DFG~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~-----~~~~~i- 222 (347)
T 3zgw_A 150 IDFGLCAKPKGNK-DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM-----ALYKKI- 222 (347)
T ss_dssp CCCTTCBC---------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHH-
T ss_pred EeccCcccccCCC-CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHH-
Confidence 9999997654322 122334569999999999988875 89999999999999999999999752111 111100
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
..... . .+...++++.+++.+||+.||++|||++|+++.
T Consensus 223 -------~~~~~-~-------------------~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 223 -------MRGKY-D-------------------VPKWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp -------HHTCC-C-------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred -------HcCCC-C-------------------CCCCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 00000 0 000123457889999999999999999999873
No 67
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=374.11 Aligned_cols=267 Identities=23% Similarity=0.368 Sum_probs=209.2
Q ss_pred hcCCcccCcccccceeeEEEEEE-----cCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGIL-----DQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.++|++.+.||+|+||.||+|++ ..+++.||||+++.. .......+.+|+.++++++||||+++++++.
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----- 144 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 144 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence 35789999999999999999995 345678999999643 3445567889999999999999999999964
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
.....++||||+++|+|.+++...... ......+++.+++.++.||+.||+|||+. +|+||||||+|||++.++
T Consensus 145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~---~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~ 218 (367)
T 3l9p_A 145 QSLPRFILLELMAGGDLKSFLRETRPR---PSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPG 218 (367)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHHSCC---SSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSS
T ss_pred cCCCCEEEEEeCCCCCHHHHHHhhccc---cCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCC
Confidence 346779999999999999999754322 12234689999999999999999999999 999999999999999555
Q ss_pred ---cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHH
Q 043900 784 ---MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLH 859 (953)
Q Consensus 784 ---~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~ 859 (953)
.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++ |..||...... ...
T Consensus 219 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--~~~ 296 (367)
T 3l9p_A 219 PGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVL 296 (367)
T ss_dssp TTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHH
T ss_pred CCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHH
Confidence 599999999986533323333344568999999999999999999999999999999998 99999753211 111
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
....... .. .....++.++.+++.+||+.||++|||++||++.|+.+.+.
T Consensus 297 ~~i~~~~------------~~------------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 297 EFVTSGG------------RM------------------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp HHHHTTC------------CC------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHcCC------------CC------------------CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 1111000 00 00012345688999999999999999999999999998754
No 68
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=4.3e-40 Score=364.08 Aligned_cols=253 Identities=19% Similarity=0.260 Sum_probs=204.4
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchh------hHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHG------AFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
..+.|.+.+.||+|+||.||+|++..+++.||+|+++..... ..+.+.+|+.++++++||||+++++++.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~---- 85 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYE---- 85 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEE----
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEE----
Confidence 356799999999999999999999998899999999743321 3467899999999999999999999954
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
.....++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+. ||+||||||+||+++.+
T Consensus 86 -~~~~~~lv~e~~~gg~L~~~l~~----------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~ 151 (361)
T 2yab_A 86 -NRTDVVLILELVSGGELFDFLAQ----------KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151 (361)
T ss_dssp -CSSEEEEEEECCCSCBHHHHHTT----------CSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCT
T ss_pred -eCCEEEEEEEcCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCC
Confidence 44789999999999999999952 23689999999999999999999999 99999999999999877
Q ss_pred C----cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccH
Q 043900 783 M----MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNL 858 (953)
Q Consensus 783 ~----~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~ 858 (953)
+ .+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+....+ .+
T Consensus 152 ~~~~~~vkl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~-~~ 227 (361)
T 2yab_A 152 NIPIPHIKLIDFGLAHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TL 227 (361)
T ss_dssp TSSSCCEEECCCSSCEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HH
T ss_pred CCCccCEEEEecCCceEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH-HH
Confidence 7 79999999998765432 2234569999999999999999999999999999999999999997532111 00
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...... .. ... .......++++.+++.+||..||++|||++|+++
T Consensus 228 ~~i~~~------------~~--~~~--------------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 228 ANITAV------------SY--DFD--------------EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp HHHHTT------------CC--CCC--------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHhc------------CC--CCC--------------chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000000 00 000 0001123456889999999999999999999985
No 69
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-40 Score=361.41 Aligned_cols=252 Identities=21% Similarity=0.267 Sum_probs=204.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++... .....+.+|+.+++.++||||+++++++. +.+..+
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE-----SMEELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEEE
Confidence 468999999999999999999999999999999997543 34567889999999999999999999964 347899
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC--CCcEEE
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE--EMMAHV 787 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kL 787 (953)
+||||+++|+|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||
T Consensus 78 lv~e~~~g~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl 145 (321)
T 1tki_A 78 MIFEFISGLDIFERINTS---------AFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKI 145 (321)
T ss_dssp EEECCCCCCBHHHHHTSS---------SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEE
T ss_pred EEEEeCCCCCHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEE
Confidence 999999999999999532 23589999999999999999999999 9999999999999987 789999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|..||......+ .........
T Consensus 146 ~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~-- 219 (321)
T 1tki_A 146 IEFGQARQLKPGD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ-IIENIMNAE-- 219 (321)
T ss_dssp CCCTTCEECCTTC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTC--
T ss_pred EECCCCeECCCCC---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH-HHHHHHcCC--
Confidence 9999998775332 2234568999999999999889999999999999999999999997532111 011111000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.... .......+.++.+++.+||+.||++|||+.|+++
T Consensus 220 ----------~~~~----------------~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 220 ----------YTFD----------------EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp ----------CCCC----------------HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----------CCCC----------------hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0000 0001133567899999999999999999999987
No 70
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=9.6e-41 Score=372.28 Aligned_cols=262 Identities=23% Similarity=0.413 Sum_probs=198.1
Q ss_pred hcCCcccCcccccceeeEEEEEEc---CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILD---QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|++. ..+..||||+++.. .....+.+.+|+.++++++||||++++++|. ..
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~ 118 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----KS 118 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eC
Confidence 357999999999999999999986 45567999999754 3445678999999999999999999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.++++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 119 ~~~~lv~e~~~~~sL~~~l~~~---------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 186 (373)
T 2qol_A 119 KPVMIVTEYMENGSLDSFLRKH---------DAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVC 186 (373)
T ss_dssp SSCEEEEECCTTCBHHHHHHTT---------TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCE
T ss_pred CceEEEEeCCCCCcHHHHHHhC---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCE
Confidence 6789999999999999999632 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 786 HVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
||+|||+++........ .......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+ .....
T Consensus 187 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~--~~~~i- 263 (373)
T 2qol_A 187 KVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD--VIKAV- 263 (373)
T ss_dssp EECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH--HHHHH-
T ss_pred EECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHH-
Confidence 99999999876533221 11222335788999999999999999999999999999998 999997532111 11100
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHh
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~ 940 (953)
..... ......++.++.+++.+||+.||++||+++||++.|+++.+..
T Consensus 264 -----------~~~~~------------------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 264 -----------DEGYR------------------LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp -----------HTTEE------------------CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred -----------HcCCC------------------CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 00000 0001134567899999999999999999999999999997653
No 71
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=360.19 Aligned_cols=287 Identities=18% Similarity=0.216 Sum_probs=215.1
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++... .....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~~ 84 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRHK 84 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCCE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecC---CCceE
Confidence 357999999999999999999999988899999997433 33457788999999999999999999987532 33578
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe----cCCCc
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL----DEEMM 784 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~~ 784 (953)
++||||+++++|.+++..... ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 154 (319)
T 4euu_A 85 VLIMEFCPCGSLYTVLEEPSN-------AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSV 154 (319)
T ss_dssp EEEEECCTTCBHHHHHHSGGG-------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEE
T ss_pred EEEEeCCCCCCHHHHHHHhcc-------ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCce
Confidence 999999999999999964322 12489999999999999999999999 99999999999999 78888
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccC--------CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL--------GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM 856 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~ 856 (953)
+||+|||+++....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||........
T Consensus 155 ~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~ 231 (319)
T 4euu_A 155 YKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR 231 (319)
T ss_dssp EEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGG
T ss_pred EEEccCCCceecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccch
Confidence 99999999987754322 23356999999999876 57889999999999999999999999975433222
Q ss_pred cHHHHH--HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHH
Q 043900 857 NLHNFA--RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQ 934 (953)
Q Consensus 857 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~ 934 (953)
...... ....+......+........ ... .............+..+.+++.+||+.||++|||++|+++...
T Consensus 232 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~ 305 (319)
T 4euu_A 232 NKEVMYKIITGKPSGAISGVQKAENGPI---DWS---GDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (319)
T ss_dssp CHHHHHHHHHHCCTTCCEEEECSTTCCE---EEE---SSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHhcCCCcccchhhhcccCCcc---ccC---ccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence 111111 11111111111100000000 000 0000111223466778999999999999999999999999988
Q ss_pred HHHH
Q 043900 935 SIKN 938 (953)
Q Consensus 935 ~i~~ 938 (953)
+...
T Consensus 306 d~~~ 309 (319)
T 4euu_A 306 DILH 309 (319)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 7643
No 72
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.2e-40 Score=371.40 Aligned_cols=277 Identities=15% Similarity=0.201 Sum_probs=211.1
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCC-----CeEEEEEEeeccchhh-----------HHHHHHHHHHHhhcCCCCeeE
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQG-----KTTVAVKVFNLLHHGA-----------FKSFIAECNTLKNIRHRNLVK 692 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~niv~ 692 (953)
..++|++.+.||+|+||.||+|.+..+ ++.||||++....... ......|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 345899999999999999999999765 4679999986543211 123445666777889999999
Q ss_pred EEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecC
Q 043900 693 ILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDL 772 (953)
Q Consensus 693 ~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 772 (953)
+++++... .......++||||+ +++|.+++... ...+++.+++.|+.||+.||+|||+. +|+||||
T Consensus 113 ~~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~---------~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDl 178 (364)
T 3op5_A 113 YWGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEAN---------AKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDI 178 (364)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHT---------TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred EEeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhc---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecC
Confidence 99997643 22335689999999 99999999632 23689999999999999999999999 9999999
Q ss_pred CCCCeEec--CCCcEEEeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCC
Q 043900 773 KPSNVLLD--EEMMAHVSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRK 845 (953)
Q Consensus 773 kp~NIll~--~~~~~kL~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~ 845 (953)
||+|||++ .++.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||+||+
T Consensus 179 kp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~ 258 (364)
T 3op5_A 179 KASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGH 258 (364)
T ss_dssp CGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCC
Confidence 99999999 8899999999999876432211 1113345999999999999999999999999999999999999
Q ss_pred CCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCC
Q 043900 846 KPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMN 925 (953)
Q Consensus 846 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt 925 (953)
.||...... ................++.+..+.. ..++.++.+++..||+.||++||+
T Consensus 259 ~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~li~~cl~~~p~~RP~ 316 (364)
T 3op5_A 259 LPWEDNLKD-PKYVRDSKIRYRENIASLMDKCFPA---------------------ANAPGEIAKYMETVKLLDYTEKPL 316 (364)
T ss_dssp CTTGGGTTC-HHHHHHHHHHHHHCHHHHHHHHSCT---------------------TCCCHHHHHHHHHHHTCCTTCCCC
T ss_pred CCccccccC-HHHHHHHHHHhhhhHHHHHHHhccc---------------------ccCHHHHHHHHHHHhcCCCCCCCC
Confidence 999853222 1222222222222222222222210 123567999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 043900 926 MTNVVRQLQSIKNILL 941 (953)
Q Consensus 926 ~~evl~~L~~i~~~~~ 941 (953)
+++|++.|+++.+...
T Consensus 317 ~~~l~~~l~~~~~~~~ 332 (364)
T 3op5_A 317 YENLRDILLQGLKAIG 332 (364)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999887654
No 73
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.9e-40 Score=357.60 Aligned_cols=261 Identities=27% Similarity=0.445 Sum_probs=196.1
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||+||+|++.. .||+|+++.. .....+.+.+|++++++++||||+++++++. ..
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~ 92 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST------AP 92 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SS
T ss_pred CccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc------CC
Confidence 35679999999999999999998754 5999999643 3445678999999999999999999999742 25
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 93 ~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~k 160 (289)
T 3og7_A 93 QLAIVTQWCEGSSLYHHLHAS---------ETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVK 160 (289)
T ss_dssp SCEEEEECCCEEEHHHHHTTC------------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEE
T ss_pred ccEEEEEecCCCcHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEE
Confidence 679999999999999999532 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccC---CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL---GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
|+|||+++...............||+.|+|||++. +..++.++||||||+++|||++|+.||......+........
T Consensus 161 l~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~ 240 (289)
T 3og7_A 161 IGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGR 240 (289)
T ss_dssp ECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHH
T ss_pred EccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcc
Confidence 99999998664333333334456999999999986 667889999999999999999999999764322211111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
.......... ...+++++.+++.+||+.||++|||++|+++.|+++.
T Consensus 241 ~~~~~~~~~~---------------------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 241 GSLSPDLSKV---------------------------RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp TSCCCCTTSS---------------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred cccCcchhhc---------------------------cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 1111110000 0134567899999999999999999999999999874
No 74
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.7e-40 Score=362.41 Aligned_cols=249 Identities=20% Similarity=0.247 Sum_probs=202.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|+...+++.||+|+++.. .......+.+|+.+++.++||||+++++++. ..+
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~-----~~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ-----THD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEE-----eCC
Confidence 35799999999999999999999998899999999743 2334567889999999999999999999954 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vk 145 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSR----------ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIK 145 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHH----------HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEE
T ss_pred EEEEEEeCCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEE
Confidence 89999999999999999852 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+++..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||...... .......
T Consensus 146 L~DFG~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-----~~~~~i~ 218 (337)
T 1o6l_A 146 ITDFGLCKEGISD--GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-----RLFELIL 218 (337)
T ss_dssp ECCCTTCBCSCCT--TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHH
T ss_pred EeeccchhhcccC--CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH-----HHHHHHH
Confidence 9999999864322 12233456999999999999999999999999999999999999999752111 1111000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-----CHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-----NMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~evl~ 931 (953)
..... .+...++++.+++.+||+.||++|| +++|+++
T Consensus 219 --------~~~~~--------------------~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 219 --------MEEIR--------------------FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp --------HCCCC--------------------CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred --------cCCCC--------------------CCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 00000 0002345688999999999999999 8999876
No 75
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=8.5e-41 Score=366.86 Aligned_cols=259 Identities=23% Similarity=0.363 Sum_probs=201.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeE----EEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTT----VAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~----vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
.++|++.+.||+|+||+||+|++..+++. ||+|.++.. .....+.+.+|+.++++++||||++++++|..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 88 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence 35699999999999999999998766544 578877532 33456789999999999999999999999753
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
...++|+||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 89 -~~~~~v~e~~~~g~L~~~l~~~---------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~ 155 (327)
T 3poz_A 89 -STVQLITQLMPFGCLLDYVREH---------KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQH 155 (327)
T ss_dssp -SSEEEEEECCTTCBHHHHHHHS---------TTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTE
T ss_pred -CCeEEEEEecCCCcHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCC
Confidence 3478999999999999999632 23589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
+||+|||+|+...............+|+.|+|||++.+..++.++|||||||++|||+| |+.||....... ......
T Consensus 156 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~~~ 233 (327)
T 3poz_A 156 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILE 233 (327)
T ss_dssp EEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHH
T ss_pred EEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH--HHHHHH
Confidence 99999999988765444444445567889999999999999999999999999999999 999997532221 111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~ 938 (953)
..... .....++.++.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus 234 ~~~~~------------------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 234 KGERL------------------------------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTCCC------------------------------CCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred cCCCC------------------------------CCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 11000 0001234568899999999999999999999999998864
No 76
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=3.4e-40 Score=360.36 Aligned_cols=286 Identities=23% Similarity=0.346 Sum_probs=192.2
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
..++|++.+.||+|+||.||+|.+..+++.||+|+++... ....+.+.+|++++++++||||+++++++. .++.
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~ 77 (317)
T 2pmi_A 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIH-----TENK 77 (317)
T ss_dssp ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEEC-----CTTE
T ss_pred cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEE-----ECCe
Confidence 3568999999999999999999999888899999997443 334567889999999999999999999954 4478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||++ |+|.+++...... .....+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+||
T Consensus 78 ~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl 149 (317)
T 2pmi_A 78 LTLVFEFMD-NDLKKYMDSRTVG----NTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKL 149 (317)
T ss_dssp EEEEEECCC-CBHHHHHHHHHSS----SCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEE
T ss_pred EEEEEEecC-CCHHHHHHhcccc----ccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEE
Confidence 999999997 5999988643221 1224589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh-
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA- 865 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~- 865 (953)
+|||+++...... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+ .........
T Consensus 150 ~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~ 226 (317)
T 2pmi_A 150 GDFGLARAFGIPV--NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEE-QLKLIFDIMG 226 (317)
T ss_dssp CCCSSCEETTSCC--CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHC
T ss_pred CcCccceecCCCc--ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhC
Confidence 9999998764322 122344689999999998764 68999999999999999999999997543221 111111111
Q ss_pred CC-chhhhhccccccCCchhhhhcccc-hhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LP-DHVVDIVDSTLLSDDEDLAVHGNQ-RQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~-~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.+ .......... ............. .............+.++.+++.+||+.||++|||++|+++
T Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 227 TPNESLWPSVTKL-PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp SCCTTTCGGGGGC-TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCChhHhhhhhhh-hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 01 0100000000 0000000000000 0000000011123457899999999999999999999875
No 77
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=369.70 Aligned_cols=276 Identities=23% Similarity=0.365 Sum_probs=217.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcC-------CCeEEEEEEeecc-chhhHHHHHHHHHHHhhc-CCCCeeEEEeeeccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQ-------GKTTVAVKVFNLL-HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGV 700 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~-------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 700 (953)
.++|.+.+.||+|+||+||+|++.. ....||||+++.. .....+.+.+|+++++++ +||||++++++|.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 145 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-- 145 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec--
Confidence 4678999999999999999999753 3357999999743 344557889999999999 9999999999964
Q ss_pred ccCCCCceeEEEeeccCCchhhccccCCcCCc------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 701 DYQGNDFKALVFEFMQNRSLEEWLHPITREDK------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
.++..++||||+++|+|.+++........ .......+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 146 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 219 (382)
T 3tt0_A 146 ---QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA 219 (382)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCG
T ss_pred ---cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCc
Confidence 34678999999999999999975432110 011234699999999999999999999999 999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCccc
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFE 853 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~ 853 (953)
+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |..||.....
T Consensus 220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~ 299 (382)
T 3tt0_A 220 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV 299 (382)
T ss_dssp GGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred ceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999987755443344445568899999999999999999999999999999999 9999875321
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
. ........... .. .+..+++++.+++.+||+.||++|||++||++.|
T Consensus 300 ~--~~~~~~~~~~~------------~~------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L 347 (382)
T 3tt0_A 300 E--ELFKLLKEGHR------------MD------------------KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 347 (382)
T ss_dssp H--HHHHHHHTTCC------------CC------------------CCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred H--HHHHHHHcCCC------------CC------------------CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence 1 11111110000 00 0012345689999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 043900 934 QSIKNILLGHRI 945 (953)
Q Consensus 934 ~~i~~~~~~~~~ 945 (953)
+++.........
T Consensus 348 ~~~~~~~~~~~~ 359 (382)
T 3tt0_A 348 DRIVALTSNQEM 359 (382)
T ss_dssp HHHHHHSCSCC-
T ss_pred HHHHHHHhcCCC
Confidence 999887665543
No 78
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=3.8e-40 Score=360.24 Aligned_cols=270 Identities=24% Similarity=0.379 Sum_probs=213.6
Q ss_pred hcCCcccCcccccceeeEEEEEEc-----CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILD-----QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~-----~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.++|.+.+.||+|+||.||+|++. .+++.||+|+++.. .....+.+.+|++++++++||||+++++++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 96 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS----- 96 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe-----
Confidence 467899999999999999999983 44578999999743 3445678899999999999999999999964
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCC--------------cccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEe
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITRED--------------KTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITH 769 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~--------------~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH 769 (953)
..+..++||||+++|+|.+++....... ........+++.+++.++.|++.||+|||+. +|+|
T Consensus 97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH 173 (314)
T 2ivs_A 97 QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH 173 (314)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcc
Confidence 3467899999999999999997543210 0001224589999999999999999999999 9999
Q ss_pred ecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCC
Q 043900 770 CDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPV 848 (953)
Q Consensus 770 ~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf 848 (953)
|||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus 174 ~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 253 (314)
T 2ivs_A 174 RDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY 253 (314)
T ss_dssp CCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred cccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999987755444334444567889999999999899999999999999999999 99999
Q ss_pred CCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHH
Q 043900 849 DSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTN 928 (953)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e 928 (953)
....... ............ ....+++++.+++.+||+.||++|||++|
T Consensus 254 ~~~~~~~--~~~~~~~~~~~~------------------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ 301 (314)
T 2ivs_A 254 PGIPPER--LFNLLKTGHRME------------------------------RPDNCSEEMYRLMLQCWKQEPDKRPVFAD 301 (314)
T ss_dssp TTCCGGG--HHHHHHTTCCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred CCCCHHH--HHHHhhcCCcCC------------------------------CCccCCHHHHHHHHHHccCChhhCcCHHH
Confidence 7532211 111111100000 00123456899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043900 929 VVRQLQSIKNI 939 (953)
Q Consensus 929 vl~~L~~i~~~ 939 (953)
+++.|+++.+.
T Consensus 302 l~~~l~~~~~~ 312 (314)
T 2ivs_A 302 ISKDLEKMMVK 312 (314)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998653
No 79
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.4e-40 Score=365.05 Aligned_cols=272 Identities=23% Similarity=0.381 Sum_probs=196.3
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCe---EEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKT---TVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~---~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
..++|++.+.||+|+||.||+|++..++. .||||+++.. .....+.+.+|++++++++||||+++++++......
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 45689999999999999999999877654 7999999743 344567899999999999999999999997543111
Q ss_pred -CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 704 -GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 704 -~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
.....++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~ 173 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIG----ENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAED 173 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTT
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhcc----ccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCC
Confidence 112348999999999999999643221 1223589999999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~ 861 (953)
+.+||+|||+++...............+++.|+|||++.+..++.++|||||||++|||++ |+.||......+ ....
T Consensus 174 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~ 251 (323)
T 3qup_A 174 MTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE--IYNY 251 (323)
T ss_dssp SCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHH
T ss_pred CCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH--HHHH
Confidence 9999999999987654433333344557889999999999999999999999999999999 999997532221 1111
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.... .... ....+++++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 252 ~~~~-----------~~~~-------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 252 LIGG-----------NRLK-------------------QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp HHTT-----------CCCC-------------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HhcC-----------CCCC-------------------CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1000 0000 0012345689999999999999999999999999998654
No 80
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.1e-40 Score=358.13 Aligned_cols=252 Identities=20% Similarity=0.274 Sum_probs=203.6
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchh------hHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHG------AFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.+.|.+.+.||+|+||.||+|++..+++.||+|+++..... ..+.+.+|+.++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 84 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE----- 84 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----
Confidence 45699999999999999999999998899999999643321 3577899999999999999999999964
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
.....++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 85 ~~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~ 151 (326)
T 2y0a_A 85 NKTDVILILELVAGGELFDFLAE----------KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRN 151 (326)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTT----------SSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSS
T ss_pred eCCEEEEEEEcCCCCCHHHHHHh----------cCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCC
Confidence 34789999999999999999952 23689999999999999999999999 999999999999999887
Q ss_pred ----cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHH
Q 043900 784 ----MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLH 859 (953)
Q Consensus 784 ----~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~ 859 (953)
.+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|..||......+ ...
T Consensus 152 ~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~ 227 (326)
T 2y0a_A 152 VPKPRIKIIDFGLAHKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLA 227 (326)
T ss_dssp SSSCCEEECCCTTCEECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHH
T ss_pred CCCCCEEEEECCCCeECCCCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHH
Confidence 89999999998774332 2234569999999999999999999999999999999999999996532111 000
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
........ .. .......+..+.+++.+||+.||++|||++|+++
T Consensus 228 ~~~~~~~~-------------~~---------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 228 NVSAVNYE-------------FE---------------DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HHHHTCCC-------------CC---------------HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHhcCCC-------------cC---------------ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 00000000 00 0001123456889999999999999999999987
No 81
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=5.6e-40 Score=358.55 Aligned_cols=275 Identities=25% Similarity=0.386 Sum_probs=203.5
Q ss_pred hhcCCcccCcccccceeeEEEEEEcC---CCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQ---GKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
..++|.+.+.||+|+||.||+|.+.. +++.||+|+++.. .....+.+.+|+.++++++||||+++++++......
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 45678899999999999999998865 4458999998743 344557789999999999999999999998654333
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
.....++||||+++|+|.+++...... .....+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~ 184 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLE----TGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDM 184 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBT----TSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTS
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhh----cCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCC
Confidence 334579999999999999998533221 1234699999999999999999999999 999999999999999999
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~ 862 (953)
.+||+|||+++...............+++.|+|||++.+..++.++||||||+++|||++ |..||....... .....
T Consensus 185 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~ 262 (313)
T 3brb_A 185 TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE--MYDYL 262 (313)
T ss_dssp CEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHH
T ss_pred cEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH--HHHHH
Confidence 999999999987654333333334557889999999999999999999999999999999 889987532211 11111
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcc
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~ 942 (953)
..... .. ....+++++.+++.+||+.||++|||++|+++.|+++.+..++
T Consensus 263 ~~~~~-----------~~-------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 263 LHGHR-----------LK-------------------QPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp HTTCC-----------CC-------------------CBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred HcCCC-----------CC-------------------CCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 10000 00 0012345689999999999999999999999999999887654
No 82
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=8.4e-40 Score=365.05 Aligned_cols=253 Identities=19% Similarity=0.239 Sum_probs=205.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|.+..+++.||+|++..........+.+|++++++++||||+++++++. +....+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE-----DKYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEE-----CSSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEE-----eCCEEE
Confidence 467999999999999999999999988999999998665556678899999999999999999999964 347899
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC--CCcEEE
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE--EMMAHV 787 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kL 787 (953)
+||||+++|+|.+++... ...+++.+++.++.||+.||+|||+. +|+||||||+||+++. ++.+||
T Consensus 125 lv~E~~~gg~L~~~l~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL 192 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAE---------DYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKI 192 (387)
T ss_dssp EEEECCCCCBHHHHTTCT---------TCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEE
T ss_pred EEEEcCCCCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEE
Confidence 999999999999998532 23589999999999999999999999 9999999999999974 568999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|..||......+ ...........
T Consensus 193 ~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~-~~~~i~~~~~~ 268 (387)
T 1kob_A 193 IDFGLATKLNPDEI---VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE-TLQNVKRCDWE 268 (387)
T ss_dssp CCCTTCEECCTTSC---EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHCCCC
T ss_pred EecccceecCCCcc---eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCC
Confidence 99999987753322 223469999999999999999999999999999999999999997532110 01111000000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. +. .....+++++.+++.+||+.||++|||++|+++
T Consensus 269 ~------~~----------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 269 F------DE----------------------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp C------CS----------------------STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred C------Cc----------------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 0 00 000123456889999999999999999999987
No 83
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.3e-40 Score=351.91 Aligned_cols=258 Identities=27% Similarity=0.379 Sum_probs=207.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|++..+ +.||+|+++.... ..+.+.+|++++++++||||+++++++. +....+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 81 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNK-DKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC 81 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSEE
T ss_pred hhhceeeheecCCCccEEEEEEecCC-CeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCceE
Confidence 35789999999999999999999865 4799999975432 3467899999999999999999999964 346789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 82 lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D 149 (269)
T 4hcu_A 82 LVFEFMEHGCLSDYLRTQ---------RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSD 149 (269)
T ss_dssp EEEECCTTCBHHHHHHTT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECC
T ss_pred EEEEeCCCCcHHHHHHhc---------CcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecc
Confidence 999999999999999532 23589999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||+++...... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||......+ ...........
T Consensus 150 fg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~--~~~~~~~~~~~ 226 (269)
T 4hcu_A 150 FGMTRFVLDDQ-YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGFRL 226 (269)
T ss_dssp TTGGGGBCCHH-HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTCCC
T ss_pred ccccccccccc-cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH--HHHHHhcCccC
Confidence 99998654321 122233457788999999998999999999999999999999 999997532111 11100000000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
. .+...++++.+++.+||+.||++|||++|+++.|+++.+.
T Consensus 227 -----------~-------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 227 -----------Y-------------------KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp -----------C-------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -----------C-------------------CCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 0 0001245688999999999999999999999999999764
No 84
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=4.1e-40 Score=362.18 Aligned_cols=265 Identities=17% Similarity=0.204 Sum_probs=209.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||.||+|++..+++.||||++..... .+.+.+|+++++++ +||||+++++++.. ....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-----~~~~ 80 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPC-----GKYN 80 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEE-----TTEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEec-----CCcc
Confidence 3679999999999999999999998899999999874432 34678999999999 99999999998643 4778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc----
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM---- 784 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---- 784 (953)
++||||+ +++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 81 ~lv~e~~-~~~L~~~~~~~---------~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~ 147 (330)
T 2izr_A 81 AMVLELL-GPSLEDLFDLC---------DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQ 147 (330)
T ss_dssp EEEEECC-CCBHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTT
T ss_pred EEEEEeC-CCCHHHHHHHc---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCc
Confidence 9999999 99999999632 23689999999999999999999999 9999999999999998887
Q ss_pred -EEEeccccceecCCCCCcc-----cccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccH
Q 043900 785 -AHVSDFGLARFLPLSPAQT-----SSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNL 858 (953)
Q Consensus 785 -~kL~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~ 858 (953)
+||+|||+++.+....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .
T Consensus 148 ~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~ 225 (330)
T 2izr_A 148 VIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--L 225 (330)
T ss_dssp SEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--H
T ss_pred eEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--H
Confidence 9999999999765432211 1234569999999999999999999999999999999999999998643221 1
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~ 938 (953)
............ . . ........++ ++.+++.+||+.||.+||++++|.+.|+++.+
T Consensus 226 ~~~~~~i~~~~~-~-------~---------------~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~ 281 (330)
T 2izr_A 226 KERYQKIGDTKR-A-------T---------------PIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 281 (330)
T ss_dssp HHHHHHHHHHHH-H-------S---------------CHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc-c-------C---------------CHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 111100000000 0 0 0000000123 79999999999999999999999999999877
Q ss_pred Hh
Q 043900 939 IL 940 (953)
Q Consensus 939 ~~ 940 (953)
..
T Consensus 282 ~~ 283 (330)
T 2izr_A 282 RK 283 (330)
T ss_dssp HT
T ss_pred Hc
Confidence 64
No 85
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2e-40 Score=367.36 Aligned_cols=274 Identities=24% Similarity=0.399 Sum_probs=211.5
Q ss_pred hhcCCcccCcccccceeeEEEEEEcC-----CCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQ-----GKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
..++|++.+.||+|+||.||+|++.. +++.||+|+++.. .....+.+.+|+.++++++||||++++++|.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 120 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA---- 120 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC----
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc----
Confidence 45789999999999999999999974 4478999999754 3344678999999999999999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCc--------------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeE
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDK--------------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPIT 768 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~--------------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 768 (953)
.++..++||||+++|+|.+++........ .......+++.+++.++.||+.||+|||+. +|+
T Consensus 121 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~iv 196 (343)
T 1luf_A 121 -VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFV 196 (343)
T ss_dssp -SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred -cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence 34778999999999999999975432100 001125799999999999999999999999 999
Q ss_pred eecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCC
Q 043900 769 HCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKP 847 (953)
Q Consensus 769 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~p 847 (953)
||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |..|
T Consensus 197 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 276 (343)
T 1luf_A 197 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP 276 (343)
T ss_dssp CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred cCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999987643333233344568899999999998899999999999999999999 9999
Q ss_pred CCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHH
Q 043900 848 VDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMT 927 (953)
Q Consensus 848 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ 927 (953)
|...... ...... .+...... +..++.++.+++.+||+.||++|||+.
T Consensus 277 ~~~~~~~-----~~~~~~--------~~~~~~~~-------------------~~~~~~~l~~li~~~l~~~p~~Rps~~ 324 (343)
T 1luf_A 277 YYGMAHE-----EVIYYV--------RDGNILAC-------------------PENCPLELYNLMRLCWSKLPADRPSFC 324 (343)
T ss_dssp TTTSCHH-----HHHHHH--------HTTCCCCC-------------------CTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred CCCCChH-----HHHHHH--------hCCCcCCC-------------------CCCCCHHHHHHHHHHcccCcccCCCHH
Confidence 9753211 111100 00000000 012345689999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 043900 928 NVVRQLQSIKNILLG 942 (953)
Q Consensus 928 evl~~L~~i~~~~~~ 942 (953)
|+++.|+++.+...+
T Consensus 325 ~~~~~L~~~~~~~~~ 339 (343)
T 1luf_A 325 SIHRILQRMCERAEG 339 (343)
T ss_dssp HHHHHHHHTTC----
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998765543
No 86
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=5.3e-40 Score=354.79 Aligned_cols=275 Identities=20% Similarity=0.286 Sum_probs=201.7
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
++|++.+.||+|+||+||+|++..+++.||+|+++... ......+.+|+.++++++||||+++++++. .+...
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence 57999999999999999999999988999999997432 334577889999999999999999999964 34789
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++ ++.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 77 ~lv~e~~~~-~l~~~~~~~---------~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~ 143 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSC---------NGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLA 143 (292)
T ss_dssp EEEEECCSE-EHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCC-CHHHHHHhC---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEe
Confidence 999999975 555555321 23689999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCC-CCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE-VSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||.++..... ........||+.|+|||++.+.. ++.++||||+||++|||++|..||...................
T Consensus 144 Dfg~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~ 221 (292)
T 3o0g_A 144 NFGLARAFGIP--VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGT 221 (292)
T ss_dssp CCTTCEECCSC--CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCC
T ss_pred ecccceecCCc--cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCC
Confidence 99999876432 22233456899999999988766 7999999999999999999988864332222222222221111
Q ss_pred c---hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 D---HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. ....... . ...... ................+.++.+++.+||+.||++|||++|+++
T Consensus 222 ~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 222 PTEEQWPSMTK-L--PDYKPY---PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCTTTCTTGGG-S--TTCCCC---CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CChhhhhhhcc-c--cccccc---ccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 1 0100000 0 000000 0000000000111134567889999999999999999999875
No 87
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=7.1e-40 Score=355.18 Aligned_cols=266 Identities=15% Similarity=0.180 Sum_probs=212.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ..+.+.+|+.+++++ +|++++++++++. .....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGLHN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETTEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecC-----CCcee
Confidence 457999999999999999999998888999999986432 234678899999999 7999999999854 34788
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc----
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM---- 784 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---- 784 (953)
++||||+ +++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 82 ~lv~e~~-~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~ 148 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLC---------GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNAN 148 (298)
T ss_dssp EEEEECC-CCBHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTT
T ss_pred EEEEEec-CCCHHHHHHHh---------ccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCC
Confidence 9999999 99999999632 23589999999999999999999999 9999999999999987776
Q ss_pred -EEEeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc-
Q 043900 785 -AHVSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN- 857 (953)
Q Consensus 785 -~kL~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~- 857 (953)
+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 149 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~ 228 (298)
T 1csn_A 149 MIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ 228 (298)
T ss_dssp CEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH
T ss_pred eEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHH
Confidence 999999999877543221 1233456999999999999999999999999999999999999999864322110
Q ss_pred -HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHH
Q 043900 858 -LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSI 936 (953)
Q Consensus 858 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i 936 (953)
............. ......+++++.+++.+||+.||++|||+++|++.|+++
T Consensus 229 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~ 281 (298)
T 1csn_A 229 KYERIGEKKQSTPL---------------------------RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 281 (298)
T ss_dssp HHHHHHHHHHHSCH---------------------------HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhhccCccH---------------------------HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence 0000000000000 000113456799999999999999999999999999999
Q ss_pred HHHhcc
Q 043900 937 KNILLG 942 (953)
Q Consensus 937 ~~~~~~ 942 (953)
.+....
T Consensus 282 ~~~~~~ 287 (298)
T 1csn_A 282 LERLNT 287 (298)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 877544
No 88
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.1e-40 Score=366.94 Aligned_cols=256 Identities=21% Similarity=0.233 Sum_probs=203.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-----hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-----HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
.++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+.+++.++||||+++++++. .
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~ 97 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----S 97 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----E
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence 356999999999999999999999988999999996322 123577899999999999999999999964 3
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++|+|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 98 ~~~~~lv~e~~~g~~L~~~l~~~~~------~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~ 168 (351)
T 3c0i_A 98 DGMLYMVFEFMDGADLCFEIVKRAD------AGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKEN 168 (351)
T ss_dssp TTEEEEEEECCSSCBHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSST
T ss_pred CCEEEEEEeCCCCCCHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCC
Confidence 4789999999999999988853221 123589999999999999999999999 9999999999999986654
Q ss_pred ---EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHH
Q 043900 785 ---AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 785 ---~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~ 861 (953)
+||+|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......
T Consensus 169 ~~~vkl~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i 244 (351)
T 3c0i_A 169 SAPVKLGGFGVAIQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGI 244 (351)
T ss_dssp TCCEEECCCTTCEECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHH
T ss_pred CCcEEEecCcceeEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHH
Confidence 9999999998775322 223345699999999999999999999999999999999999999975211 001111
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... ...... .....++.++.+++.+||+.||++|||+.|+++
T Consensus 245 ~~~------------~~~~~~----------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 245 IKG------------KYKMNP----------------RQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHT------------CCCCCH----------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HcC------------CCCCCc----------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 000000 001123567889999999999999999999986
No 89
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=7.2e-40 Score=352.93 Aligned_cols=254 Identities=26% Similarity=0.398 Sum_probs=202.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchh-------hHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHG-------AFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
.++|++.+.||+|+||+||+|++..+++.||+|++...... ..+.+.+|++++++++||||+++++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--- 94 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN--- 94 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---
Confidence 36799999999999999999999988899999998643221 12678999999999999999999999642
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC--eEeecCCCCCeEec
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP--ITHCDLKPSNVLLD 780 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~ 780 (953)
..++||||+++|+|.+++... ...+++..++.++.|++.||+|||+. + |+||||||+||+++
T Consensus 95 ----~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~ 158 (287)
T 4f0f_A 95 ----PPRMVMEFVPCGDLYHRLLDK---------AHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQ 158 (287)
T ss_dssp ----TTEEEEECCTTCBHHHHHHCT---------TSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEES
T ss_pred ----CCeEEEEecCCCCHHHHHhcc---------cCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEe
Confidence 237999999999999988532 23689999999999999999999998 8 99999999999998
Q ss_pred CCCc-----EEEeccccceecCCCCCccccccccccccccccccc--CCCCCCcccchHHHHHHHHHHHhCCCCCCCccc
Q 043900 781 EEMM-----AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYG--LGSEVSINGDVYSYGILLLELVTRKKPVDSMFE 853 (953)
Q Consensus 781 ~~~~-----~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~ 853 (953)
.++. +||+|||+++.... ......||+.|+|||++ .+..++.++||||+||++|||++|+.||.....
T Consensus 159 ~~~~~~~~~~kl~Dfg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 233 (287)
T 4f0f_A 159 SLDENAPVCAKVADFGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSY 233 (287)
T ss_dssp CCCTTCSCCEEECCCTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred ccCCCCceeEEeCCCCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccc
Confidence 8776 99999999985432 22345689999999998 445678999999999999999999999975433
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
............. .... ....+++++.+++.+||+.||++|||++|+++.|
T Consensus 234 ~~~~~~~~~~~~~-----------~~~~------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L 284 (287)
T 4f0f_A 234 GKIKFINMIREEG-----------LRPT------------------IPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKEL 284 (287)
T ss_dssp CHHHHHHHHHHSC-----------CCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred cHHHHHHHHhccC-----------CCCC------------------CCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence 3221111111100 0000 0012345789999999999999999999999999
Q ss_pred HHH
Q 043900 934 QSI 936 (953)
Q Consensus 934 ~~i 936 (953)
+++
T Consensus 285 ~~l 287 (287)
T 4f0f_A 285 SEL 287 (287)
T ss_dssp HTC
T ss_pred HhC
Confidence 863
No 90
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=2.8e-40 Score=352.30 Aligned_cols=258 Identities=25% Similarity=0.360 Sum_probs=207.1
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|.+..+ ..||+|+++.... ..+.+.+|++++++++||||+++++++. .....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 79 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQ-YDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCS-----KEYPIY 79 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT-EEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSSEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCc-eeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCceE
Confidence 46799999999999999999988764 5799999975432 3467899999999999999999999964 447789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 80 lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~D 147 (268)
T 3sxs_A 80 IVTEYISNGCLLNYLRSH---------GKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSD 147 (268)
T ss_dssp EEEECCTTCBHHHHHHHH---------GGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECC
T ss_pred EEEEccCCCcHHHHHHHc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEcc
Confidence 999999999999999532 23589999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||.++...... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||......+. .........
T Consensus 148 fg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~--~~~~~~~~~- 223 (268)
T 3sxs_A 148 FGMTRYVLDDQ-YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV--VLKVSQGHR- 223 (268)
T ss_dssp TTCEEECCTTC-EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--HHHHHTTCC-
T ss_pred Cccceecchhh-hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH--HHHHHcCCC-
Confidence 99998765432 222334457788999999999899999999999999999999 9999975322110 000000000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
... +...++++.+++.+||+.||++|||++|+++.|+.+++.
T Consensus 224 ----------~~~-------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 224 ----------LYR-------------------PHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp ----------CCC-------------------CTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred ----------CCC-------------------CCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 000 001234688999999999999999999999999988643
No 91
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=8.1e-40 Score=357.43 Aligned_cols=273 Identities=23% Similarity=0.324 Sum_probs=215.2
Q ss_pred hcCCcccCcccccceeeEEEEEE-----cCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhc-CCCCeeEEEeeeccccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGIL-----DQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDY 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~ 702 (953)
.++|++.+.||+|+||.||+|++ ..+++.||+|+++... ....+.+.+|+.+++++ +||||++++++|.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~---- 97 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT---- 97 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe----
Confidence 46799999999999999999996 4466789999997443 34457889999999999 9999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCc--------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDK--------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~--------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
.++..++||||+++|+|.+++........ .......+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 98 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp 173 (313)
T 1t46_A 98 -IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAA 173 (313)
T ss_dssp -SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSG
T ss_pred -cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCcc
Confidence 34678999999999999999975432100 011223589999999999999999999999 999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCccc
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFE 853 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~ 853 (953)
+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||+| |+.||.....
T Consensus 174 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~ 253 (313)
T 1t46_A 174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV 253 (313)
T ss_dssp GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS
T ss_pred ceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 999999999999999999987765444333444567889999999999999999999999999999999 9999975432
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
.. ............. ....++.++.+++.+||+.||++|||++|+++.|
T Consensus 254 ~~-~~~~~~~~~~~~~------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L 302 (313)
T 1t46_A 254 DS-KFYKMIKEGFRML------------------------------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI 302 (313)
T ss_dssp SH-HHHHHHHHTCCCC------------------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred hh-HHHHHhccCCCCC------------------------------CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence 21 1111111110000 0012345689999999999999999999999999
Q ss_pred HHHHHHhc
Q 043900 934 QSIKNILL 941 (953)
Q Consensus 934 ~~i~~~~~ 941 (953)
+++.....
T Consensus 303 ~~~~~~~~ 310 (313)
T 1t46_A 303 EKQISEST 310 (313)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99876543
No 92
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=8.3e-40 Score=374.41 Aligned_cols=254 Identities=27% Similarity=0.366 Sum_probs=205.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|+.++++++||||++++++|.. .....+
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~~ 263 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLY 263 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TTSCEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----CCCceE
Confidence 356888999999999999999986 3589999997543 45789999999999999999999999743 234789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++|+|.++++... ...+++..++.++.||+.||+|||++ +|+||||||+|||++.++.+||+|
T Consensus 264 iv~e~~~~g~L~~~l~~~~--------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~D 332 (450)
T 1k9a_A 264 IVTEYMAKGSLVDYLRSRG--------RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSD 332 (450)
T ss_dssp EEEECCTTCBHHHHHHHHC--------TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECC
T ss_pred EEEEecCCCcHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEee
Confidence 9999999999999996432 12478999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||+++...... ....+++.|+|||++.+..++.++|||||||++|||+| |+.||......+ .........
T Consensus 333 fG~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~-- 403 (450)
T 1k9a_A 333 FGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGY-- 403 (450)
T ss_dssp CTTCEECC-----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTTC--
T ss_pred CCCcccccccc-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC--
Confidence 99998653221 12247889999999999999999999999999999999 999997643221 111111000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
+...+..+++++.+++.+||+.||++|||+.|+++.|+++...
T Consensus 404 ----------------------------~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 404 ----------------------------KMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp ----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ----------------------------CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 0001113456799999999999999999999999999998764
No 93
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=9.3e-40 Score=370.92 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=202.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|++++++++||||+++++++. +.+
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-----~~~ 83 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSIS-----EEG 83 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEE-----CSS
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEE-----ECC
Confidence 4567999999999999999999999999999999996433 334567899999999999999999999954 457
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec---CCC
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD---EEM 783 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~---~~~ 783 (953)
..++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+. +|+||||||+||+++ .++
T Consensus 84 ~~~lv~E~~~gg~L~~~i~~----------~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~ 150 (444)
T 3soa_A 84 HHYLIFDLVTGGELFEDIVA----------REYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGA 150 (444)
T ss_dssp EEEEEECCCBCCBHHHHHHH----------CSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTC
T ss_pred EEEEEEEeCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCC
Confidence 89999999999999999852 23589999999999999999999999 999999999999998 567
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
.+||+|||+++...... .......||+.|+|||++.+..++.++||||+||++|+|++|..||.+....+ .......
T Consensus 151 ~vkL~DFG~a~~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~-~~~~i~~ 227 (444)
T 3soa_A 151 AVKLADFGLAIEVEGEQ--QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR-LYQQIKA 227 (444)
T ss_dssp CEEECCCSSCBCCCTTC--CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHH
T ss_pred cEEEccCceeEEecCCC--ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHh
Confidence 89999999998764322 22234569999999999999999999999999999999999999997522110 0111110
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...... . .....+++++.+++.+||+.||++|||++|+++
T Consensus 228 ~~~~~~-----~-----------------------~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 228 GAYDFP-----S-----------------------PEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp TCCCCC-----T-----------------------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCC-----c-----------------------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 000000 0 000123456889999999999999999999987
No 94
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-40 Score=367.20 Aligned_cols=267 Identities=25% Similarity=0.395 Sum_probs=201.5
Q ss_pred CCcccCcccccceeeEEEEEEcCC---CeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 632 GFASANEIGVGSFGSVYKGILDQG---KTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 632 ~~~~~~~ig~G~~g~Vy~~~~~~~---~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.|.+.+.||+|+||.||+|++..+ ...||+|.++.. .....+.+.+|+.++++++||||++++++|. ..++.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEEC----CCSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEE----cCCCC
Confidence 366778999999999999998543 246899998643 3455678999999999999999999999864 23467
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++|+|.++++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~---------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL 233 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNE---------THNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKV 233 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCT---------TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHhhc---------ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEE
Confidence 89999999999999999632 23578999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCc--ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHh
Q 043900 788 SDFGLARFLPLSPAQ--TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~ 864 (953)
+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||+| |.+||......+ .......
T Consensus 234 ~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~--~~~~~~~ 311 (373)
T 3c1x_A 234 ADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQ 311 (373)
T ss_dssp CCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC--HHHHHHT
T ss_pred eeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH--HHHHHHc
Confidence 999999866432211 12233457889999999999999999999999999999999 677776532221 1111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcccc
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGHR 944 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~~ 944 (953)
... .. .+..++.++.+++.+||+.||++|||++|+++.|+++.....+..
T Consensus 312 ~~~-----------~~-------------------~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~~ 361 (373)
T 3c1x_A 312 GRR-----------LL-------------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEH 361 (373)
T ss_dssp TCC-----------CC-------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred CCC-----------CC-------------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccccc
Confidence 000 00 001234568999999999999999999999999999998877765
Q ss_pred cc
Q 043900 945 IV 946 (953)
Q Consensus 945 ~~ 946 (953)
++
T Consensus 362 ~~ 363 (373)
T 3c1x_A 362 YV 363 (373)
T ss_dssp BC
T ss_pred ee
Confidence 43
No 95
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-40 Score=364.42 Aligned_cols=277 Identities=22% Similarity=0.296 Sum_probs=210.2
Q ss_pred hhcCCcccCcccccceeeEEEEEEc-----CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILD-----QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVD 701 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~-----~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 701 (953)
..++|.+.+.||+|+||.||+|++. .+++.||+|+++.. .....+.+.+|+.+++++ +||||+++++++.
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~--- 119 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT--- 119 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe---
Confidence 4567899999999999999999973 35568999999743 234457899999999999 8999999999964
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCc-------------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeE
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDK-------------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPIT 768 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~-------------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 768 (953)
..+..++||||+++|+|.+++........ .......+++..++.++.||+.||+|||+. ||+
T Consensus 120 --~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iv 194 (344)
T 1rjb_A 120 --LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCV 194 (344)
T ss_dssp --SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred --eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 34678999999999999999975432100 001123589999999999999999999999 999
Q ss_pred eecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCC
Q 043900 769 HCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKP 847 (953)
Q Consensus 769 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~p 847 (953)
||||||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |..|
T Consensus 195 H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 274 (344)
T 1rjb_A 195 HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP 274 (344)
T ss_dssp ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999987654443334445568889999999999999999999999999999998 9999
Q ss_pred CCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHH
Q 043900 848 VDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMT 927 (953)
Q Consensus 848 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ 927 (953)
|....... ............. .+..+++++.+++.+||+.||++|||+.
T Consensus 275 ~~~~~~~~-~~~~~~~~~~~~~------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ 323 (344)
T 1rjb_A 275 YPGIPVDA-NFYKLIQNGFKMD------------------------------QPFYATEEIYIIMQSCWAFDSRKRPSFP 323 (344)
T ss_dssp STTCCCSH-HHHHHHHTTCCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred cccCCcHH-HHHHHHhcCCCCC------------------------------CCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence 97643221 1111111110000 0012345689999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 043900 928 NVVRQLQSIKNILLGHR 944 (953)
Q Consensus 928 evl~~L~~i~~~~~~~~ 944 (953)
|+++.|+.+.+......
T Consensus 324 ~l~~~l~~~~~~~~~~~ 340 (344)
T 1rjb_A 324 NLTSFLGCQLADAEEAM 340 (344)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999877655443
No 96
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-40 Score=356.14 Aligned_cols=260 Identities=27% Similarity=0.378 Sum_probs=201.0
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeE
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKAL 710 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 710 (953)
++|++.+.||+|+||.||+|++. ++.||+|+++.. ...+.+.+|++++++++||||+++++++. +..++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~l 76 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVCL 76 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTEE
T ss_pred hHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcEE
Confidence 56889999999999999999986 357999998643 34578899999999999999999999864 34789
Q ss_pred EEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc-EEEec
Q 043900 711 VFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM-AHVSD 789 (953)
Q Consensus 711 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-~kL~D 789 (953)
||||+++|+|.+++..... ...+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|
T Consensus 77 v~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~D 149 (307)
T 2eva_A 77 VMEYAEGGSLYNVLHGAEP-------LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICD 149 (307)
T ss_dssp EEECCTTCBHHHHHHCSSS-------EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECC
T ss_pred EEEcCCCCCHHHHHhccCC-------CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcc
Confidence 9999999999999964321 234788999999999999999999932239999999999999998886 79999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCch
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDH 869 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 869 (953)
||++...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||....................
T Consensus 150 fg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~- 223 (307)
T 2eva_A 150 FGTACDIQTH-----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRP- 223 (307)
T ss_dssp CCC-----------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCC-
T ss_pred cccccccccc-----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCC-
Confidence 9999765321 2234589999999999999999999999999999999999999975322211111100000000
Q ss_pred hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhccc
Q 043900 870 VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGH 943 (953)
Q Consensus 870 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~ 943 (953)
. ....++..+.+++.+||+.||++|||++|+++.|+.+.+...+.
T Consensus 224 -------~----------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~ 268 (307)
T 2eva_A 224 -------P----------------------LIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 268 (307)
T ss_dssp -------C----------------------CBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCT
T ss_pred -------C----------------------cccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCC
Confidence 0 00123456889999999999999999999999999998877654
No 97
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=352.18 Aligned_cols=252 Identities=23% Similarity=0.273 Sum_probs=197.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch--------------------------hhHHHHHHHHHHHh
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH--------------------------GAFKSFIAECNTLK 683 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 683 (953)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999964321 12356889999999
Q ss_pred hcCCCCeeEEEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC
Q 043900 684 NIRHRNLVKILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC 763 (953)
Q Consensus 684 ~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~ 763 (953)
+++||||+++++++... .....++||||+++++|.+++. ...+++.+++.++.|++.||+|||+.
T Consensus 92 ~l~h~~iv~~~~~~~~~---~~~~~~lv~e~~~~~~l~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~- 156 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDP---NEDHLYMVFELVNQGPVMEVPT-----------LKPLSEDQARFYFQDLIKGIEYLHYQ- 156 (298)
T ss_dssp TCCCTTBCCEEEEEECS---SSSEEEEEEECCTTCBSCCSSC-----------SSCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hCCCCCCCeEEEEEEcC---CCCEEEEEEecCCCCcHHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 99999999999997532 3467899999999999988763 23689999999999999999999999
Q ss_pred CCCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCC---CCcccchHHHHHHHHH
Q 043900 764 QPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE---VSINGDVYSYGILLLE 840 (953)
Q Consensus 764 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDv~slG~vl~e 840 (953)
+|+||||||+||+++.++.+||+|||+++....... ......||+.|+|||++.+.. ++.++|||||||++||
T Consensus 157 --~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~ 232 (298)
T 2zv2_A 157 --KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYC 232 (298)
T ss_dssp --TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHH
T ss_pred --CeeccCCCHHHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHH
Confidence 999999999999999999999999999987653322 223456999999999988765 4788999999999999
Q ss_pred HHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCC
Q 043900 841 LVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESP 920 (953)
Q Consensus 841 lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP 920 (953)
|++|+.||..... ....... ...... .. ....+++++.+++.+||+.||
T Consensus 233 l~~g~~pf~~~~~-----~~~~~~~--------~~~~~~-~~-----------------~~~~~~~~l~~li~~~l~~dp 281 (298)
T 2zv2_A 233 FVFGQCPFMDERI-----MCLHSKI--------KSQALE-FP-----------------DQPDIAEDLKDLITRMLDKNP 281 (298)
T ss_dssp HHHSSCSSCCSSH-----HHHHHHH--------HHCCCC-CC-----------------SSSCCCHHHHHHHHHHTCSCT
T ss_pred HHHCCCCCCCccH-----HHHHHHH--------hcccCC-CC-----------------CccccCHHHHHHHHHHhhcCh
Confidence 9999999975211 1111000 000000 00 000234568899999999999
Q ss_pred CCCCCHHHHHH
Q 043900 921 GDRMNMTNVVR 931 (953)
Q Consensus 921 ~~RPt~~evl~ 931 (953)
++|||++|+++
T Consensus 282 ~~R~s~~e~l~ 292 (298)
T 2zv2_A 282 ESRIVVPEIKL 292 (298)
T ss_dssp TTSCCHHHHTT
T ss_pred hhCCCHHHHhc
Confidence 99999999875
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-39 Score=370.32 Aligned_cols=359 Identities=19% Similarity=0.189 Sum_probs=231.6
Q ss_pred CccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcc
Q 043900 21 SPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLS 100 (953)
Q Consensus 21 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (953)
+.+++++++|++|+|++|++++ +| .|..+++|++|+|++|+|++ +| ++.+++|++|+|++|.+++. | +++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3455556666666666666665 33 46666666666666666663 23 55566666666666666532 2 55556
Q ss_pred ccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecC
Q 043900 101 KIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAG 180 (953)
Q Consensus 101 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 180 (953)
+|++|++++|++++ +| ++.+++|++|++++|++++. + ++.+++|++|++++|+..+.+ .+.
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~----------- 167 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVT----------- 167 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCT-----------
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccc-----------
Confidence 66666666666553 33 55555666666666655532 1 455555555555555322222 233
Q ss_pred CcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCC
Q 043900 181 MNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRG 260 (953)
Q Consensus 181 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~ 260 (953)
.+++|+.|++++|++++ +| +..+++|+.|++++|++++.. +
T Consensus 168 --------------~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l-------------------- 208 (457)
T 3bz5_A 168 --------------PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--L-------------------- 208 (457)
T ss_dssp --------------TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--C--------------------
T ss_pred --------------cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--c--------------------
Confidence 45555555555555554 22 556666666666666665320 0
Q ss_pred CCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCC
Q 043900 261 HSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIP 340 (953)
Q Consensus 261 ~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 340 (953)
..+ ++|+.|++++|++++ +| ++.+++|+.|++++|.+++..
T Consensus 209 ----------------------------------~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 209 ----------------------------------NQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp ----------------------------------TTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred ----------------------------------ccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 011 356666777777765 34 667777777777777777543
Q ss_pred cCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCcccc
Q 043900 341 PAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWL 420 (953)
Q Consensus 341 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~ 420 (953)
++.+++|+.|++++|++. .|++++|.+.+.+| ++.+++|+.|++++|.+.+.+|... ..
T Consensus 250 --~~~l~~L~~L~l~~n~L~-------------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~----~~ 308 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQTDLL-------------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA----AG 308 (457)
T ss_dssp --CTTCTTCCEEECTTCCCS-------------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT----CC
T ss_pred --HHHCCCCCEEeccCCCCC-------------EEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC----Cc
Confidence 345667777777777654 46777777776766 5678999999999998877666422 12
Q ss_pred ceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCC
Q 043900 421 LIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQ 500 (953)
Q Consensus 421 l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 500 (953)
++.|+ ++++++|++|++++|+|++. + ++.+++|+.|++++|+|++ ++.|..|++++
T Consensus 309 L~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 309 ITELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CSCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred ceEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 23444 44447899999999999974 3 8999999999999999986 24677788999
Q ss_pred CcccccCCccccccccCceEeccCCcCcccCCCC
Q 043900 501 NNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIE 534 (953)
Q Consensus 501 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 534 (953)
|.++|. ..+..|+.+++++|+|+|.+|..
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999986 35677889999999999999865
No 99
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=9.3e-40 Score=362.73 Aligned_cols=254 Identities=20% Similarity=0.262 Sum_probs=203.6
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||.||+|.+..+++.||+|+++.. .....+.+.+|+.++++++||||+++++++. +..
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~ 101 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EES 101 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 356799999999999999999999998899999999743 3345577899999999999999999999964 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC---
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM--- 783 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~--- 783 (953)
..++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~ 168 (362)
T 2bdw_A 102 FHYLVFDLVTGGELFEDIVA----------REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGA 168 (362)
T ss_dssp EEEEEECCCCSCBHHHHHTT----------CSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTC
T ss_pred EEEEEEecCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCC
Confidence 88999999999999998852 23589999999999999999999999 999999999999998654
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
.+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .......
T Consensus 169 ~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~--~~~~~i~ 243 (362)
T 2bdw_A 169 AVKLADFGLAIEVNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIK 243 (362)
T ss_dssp CEEECCCTTCBCCTTCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHH
T ss_pred CEEEeecCcceEecCCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHH
Confidence 59999999998764322 223456999999999999999999999999999999999999999753211 1111110
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
...... . ......+++++.+++.+||+.||++|||+.|+++.
T Consensus 244 ~~~~~~------------~---------------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 244 AGAYDY------------P---------------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HTCCCC------------C---------------TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hCCCCC------------C---------------cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 000000 0 00001234568899999999999999999998763
No 100
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.7e-40 Score=364.26 Aligned_cols=258 Identities=23% Similarity=0.349 Sum_probs=203.8
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeE----EEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTT----VAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~----vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
++|++.+.||+|+||+||+|++..+++. ||+|++... .......+.+|+.++++++||||++++++|. +
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~ 86 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------G 86 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------B
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------C
Confidence 5789999999999999999999776654 777777432 2233456778999999999999999999863 2
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+|||++.++.+
T Consensus 87 ~~~~~v~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~ 154 (325)
T 3kex_A 87 SSLQLVTQYLPLGSLLDHVRQH---------RGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQV 154 (325)
T ss_dssp SSEEEEEECCTTCBSHHHHHSS---------GGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCE
T ss_pred CccEEEEEeCCCCCHHHHHHHc---------cccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeE
Confidence 5689999999999999999632 23588899999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++...............||..|+|||++.+..++.++|||||||++|||+| |+.||....... .......
T Consensus 155 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~--~~~~~~~ 232 (325)
T 3kex_A 155 QVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE--VPDLLEK 232 (325)
T ss_dssp EECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTH--HHHHHHT
T ss_pred EECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHH--HHHHHHc
Confidence 9999999998765444444455668889999999999999999999999999999999 999997532221 1111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~ 938 (953)
..... .+..++.++.+++.+||+.||++|||++|+++.|+.+..
T Consensus 233 ~~~~~------------------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 233 GERLA------------------------------QPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp TCBCC------------------------------CCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred CCCCC------------------------------CCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 00000 000123347789999999999999999999999998854
No 101
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-40 Score=360.00 Aligned_cols=247 Identities=23% Similarity=0.327 Sum_probs=200.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|.+.+.||+|+||.||+|++..+++.||+|++.... ......+.+|+.+++.++||||+++++++. ...
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----TPT 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 467999999999999999999999888999999996422 223467889999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+ +|+|.+++.. ...+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+|
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~----------~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~k 148 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVE----------KKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVK 148 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEE
T ss_pred EEEEEEECC-CCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEE
Confidence 799999999 7899988852 23689999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||++....... ......||+.|+|||++.+..+ ++++||||+||++|||++|+.||........
T Consensus 149 l~DFG~s~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~--------- 216 (336)
T 3h4j_B 149 IADFGLSNIMTDGN---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL--------- 216 (336)
T ss_dssp ECCSSCTBTTTTSB---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC---------
T ss_pred EEEeccceeccCCc---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH---------
Confidence 99999998664322 2234569999999999988876 6899999999999999999999975322110
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...+...... .+...++++.+++.+||+.||.+|||++|+++
T Consensus 217 -----~~~i~~~~~~-------------------~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 217 -----FKKVNSCVYV-------------------MPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp -----BCCCCSSCCC-------------------CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred -----HHHHHcCCCC-------------------CcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 0000000000 00123456889999999999999999999976
No 102
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=364.25 Aligned_cols=290 Identities=24% Similarity=0.355 Sum_probs=205.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHH--HhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNT--LKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~--l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++ +++.||||+++.... ..+..|.++ +..++||||+++++++..........
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred hHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 46799999999999999999987 456899999975432 333444444 55689999999998766554555667
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC------CCCeEeecCCCCCeEecC
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC------QPPITHCDLKPSNVLLDE 781 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------~~~ivH~Dlkp~NIll~~ 781 (953)
.++||||+++|+|.+++.. ...++..++.++.|++.||+|||+.+ .++|+||||||+|||++.
T Consensus 87 ~~lv~e~~~~g~L~~~l~~-----------~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~ 155 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSL-----------HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKN 155 (336)
T ss_dssp EEEEECCCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECT
T ss_pred EEEEEecCCCCcHHHHHhh-----------cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcC
Confidence 8999999999999999952 24588899999999999999999762 338999999999999999
Q ss_pred CCcEEEeccccceecCCCCC------cccccccccccccccccccCC-------CCCCcccchHHHHHHHHHHHhCCCCC
Q 043900 782 EMMAHVSDFGLARFLPLSPA------QTSSIDAKGSIGYIAPEYGLG-------SEVSINGDVYSYGILLLELVTRKKPV 848 (953)
Q Consensus 782 ~~~~kL~DfG~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDv~slG~vl~elltg~~pf 848 (953)
++.+||+|||+++.+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|..||
T Consensus 156 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~ 235 (336)
T 3g2f_A 156 DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDL 235 (336)
T ss_dssp TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGG
T ss_pred CCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcC
Confidence 99999999999987653221 122234469999999999887 45678899999999999999998776
Q ss_pred CCcccCCccHHHHHHhh--CCc--hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC
Q 043900 849 DSMFEGDMNLHNFARMA--LPD--HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM 924 (953)
Q Consensus 849 ~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP 924 (953)
............+.... .+. ......... ...............+++++.+++.+||+.||++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp 304 (336)
T 3g2f_A 236 FPGESVPEYQMAFQTEVGNHPTFEDMQVLVSRE-----------KQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARL 304 (336)
T ss_dssp STTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTS-----------CCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSC
T ss_pred CCccchhHHHHhhhcccCCCchHHHHHhhhccc-----------ccCCCCCcccccccchHHHHHHHHHHHhcCChhhCc
Confidence 44222111000000000 000 000000000 000000111112234677899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccccc
Q 043900 925 NMTNVVRQLQSIKNILLGHRIV 946 (953)
Q Consensus 925 t~~evl~~L~~i~~~~~~~~~~ 946 (953)
|++|+++.|+++........-+
T Consensus 305 s~~e~l~~L~~ll~~~~~~~~~ 326 (336)
T 3g2f_A 305 TAQXAEERMAELMMIWERNKSV 326 (336)
T ss_dssp CHHHHHHHHHHHHHCCCC----
T ss_pred chHHHHHHHHHHHHHHHhcccC
Confidence 9999999999998776655443
No 103
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=1.2e-39 Score=354.80 Aligned_cols=277 Identities=22% Similarity=0.301 Sum_probs=201.1
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
...++|++.+.||+|+||+||+|++.. ++.||+|+++... ......+.+|++++++++||||+++++++. ..
T Consensus 18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~ 91 (311)
T 3niz_A 18 GLMEKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIH-----SE 91 (311)
T ss_dssp CSSCEEEEEEEEEECSSCEEEEEEETT-SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CS
T ss_pred chHhhhHhhhhccCCCCeEEEEEEECC-CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEc-----cC
Confidence 345789999999999999999999976 5699999996432 233567889999999999999999999954 44
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||++ |+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 92 ~~~~lv~e~~~-~~l~~~~~~~---------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~ 158 (311)
T 3niz_A 92 RCLTLVFEFME-KDLKKVLDEN---------KTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGAL 158 (311)
T ss_dssp SCEEEEEECCS-EEHHHHHHTC---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred CEEEEEEcCCC-CCHHHHHHhc---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCE
Confidence 78999999997 4888877532 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+. .......
T Consensus 159 kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~ 235 (311)
T 3niz_A 159 KLADFGLARAFGIPV--RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ-LPKIFSI 235 (311)
T ss_dssp EECCCTTCEETTSCC--C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH-HHHHHHH
T ss_pred EEccCcCceecCCCc--ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHH
Confidence 999999998764322 22334568999999999876 5689999999999999999999999986443322 2222211
Q ss_pred hC---CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 AL---PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. +.......+...... .................+++++.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 236 LGTPNPREWPQVQELPLWKQ-----RTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HCCCCTTTSGGGTTSHHHHS-----CCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HCCCChHHhhhhhccchhhh-----cccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 11 111111000000000 000000000000011123457889999999999999999999875
No 104
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=365.11 Aligned_cols=250 Identities=23% Similarity=0.277 Sum_probs=197.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 704 (953)
..++|++.+.||+|+||.||+|+++.+++.||+|+++.. .....+.+.+|..+++.+ +||||+++++++. .
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~-----~ 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQ-----T 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----C
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEE-----e
Confidence 356899999999999999999999998899999999743 233456788999999988 7999999999954 4
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++|+|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 96 ~~~~~lv~E~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ 162 (353)
T 3txo_A 96 PDRLFFVMEFVNGGDLMFHIQK----------SRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGH 162 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSC
T ss_pred CCEEEEEEeCCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCC
Confidence 4789999999999999999953 23689999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||+|+..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||......+ .......
T Consensus 163 ikL~DFG~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~- 238 (353)
T 3txo_A 163 CKLADFGMCKEGICN--GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD-LFEAILN- 238 (353)
T ss_dssp EEECCCTTCBCSCC-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH-
T ss_pred EEEccccceeecccC--CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH-HHHHHHc-
Confidence 999999999854322 223334569999999999999999999999999999999999999997532211 0111100
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH------HHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM------TNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~------~evl~ 931 (953)
.... .+...++++.+++.+||+.||++||++ +|+++
T Consensus 239 -----------~~~~--------------------~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 239 -----------DEVV--------------------YPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp -----------CCCC--------------------CCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred -----------CCCC--------------------CCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 0000 000123568899999999999999998 66655
No 105
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=361.16 Aligned_cols=251 Identities=24% Similarity=0.327 Sum_probs=201.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++... .....+.+.+|+.+++.++||||++++++|. ...
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-----~~~ 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQ-----DEE 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 35799999999999999999999999999999999632 2334577889999999999999999999954 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++..+..++.||+.||+|||+. ||+||||||+|||++.++.+|
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~----------~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vk 155 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQ----------NVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVH 155 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHT----------TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred EEEEEEecCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEE
Confidence 89999999999999999952 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCC---CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG---SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
|+|||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ......
T Consensus 156 L~DFG~a~~~~~~---~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~~~ 230 (384)
T 4fr4_A 156 ITDFNIAAMLPRE---TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS--SKEIVH 230 (384)
T ss_dssp ECCCTTCEECCTT---CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC--HHHHHH
T ss_pred EeccceeeeccCC---CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc--HHHHHH
Confidence 9999999876433 22344569999999999864 458999999999999999999999997532221 111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCC-HHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMN-MTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-~~evl~ 931 (953)
.. ...... .+..++.++.+++.+||+.||++||+ ++++.+
T Consensus 231 ~~---------~~~~~~-------------------~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 231 TF---------ETTVVT-------------------YPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp HH---------HHCCCC-------------------CCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred HH---------hhcccC-------------------CCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 00 000000 00123456889999999999999998 666553
No 106
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=4.1e-40 Score=381.10 Aligned_cols=258 Identities=25% Similarity=0.429 Sum_probs=210.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|++..++..||||+++.... ..+.+.+|+.++++++||||++++++|.. ....+
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----~~~~~ 292 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPFY 292 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSCE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEec-----CCcEE
Confidence 4568889999999999999999998888999999975432 45789999999999999999999999743 36789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++|+|.++++.... ..+++..++.++.||+.||+|||++ +|+||||||+|||++.++.+||+|
T Consensus 293 lv~E~~~~g~L~~~l~~~~~--------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~D 361 (495)
T 1opk_A 293 IITEFMTYGNLLDYLRECNR--------QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVAD 361 (495)
T ss_dssp EEEECCTTCBHHHHHHHSCT--------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECC
T ss_pred EEEEccCCCCHHHHHHhcCc--------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEee
Confidence 99999999999999964322 3589999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||+++..... .........+++.|+|||++.+..++.++|||||||++|||+| |..||....... ........
T Consensus 362 FG~a~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~--~~~~~~~~--- 435 (495)
T 1opk_A 362 FGLSRLMTGD-TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKD--- 435 (495)
T ss_dssp TTCEECCTTC-CEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTT---
T ss_pred cccceeccCC-ceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC---
Confidence 9999876432 2222233456789999999998999999999999999999999 999997532211 11111100
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
.. ...+..+++++.+++.+||+.||++|||+.||++.|+.+.
T Consensus 436 ---------~~------------------~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 436 ---------YR------------------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp ---------CC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ---------CC------------------CCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 00 0011134567899999999999999999999999998763
No 107
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1e-39 Score=357.20 Aligned_cols=282 Identities=23% Similarity=0.308 Sum_probs=218.8
Q ss_pred CHHHHHHhhcCCcccCcccccceeeEEEEEEc-----CCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhc-CCCCeeEEE
Q 043900 622 SYQNLYNATDGFASANEIGVGSFGSVYKGILD-----QGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNI-RHRNLVKIL 694 (953)
Q Consensus 622 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~ 694 (953)
.........++|++.+.||+|+||.||+|++. .+++.||||+++... ....+.+.+|+.+++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 33444455678999999999999999999963 456789999997533 33456789999999999 799999999
Q ss_pred eeecccccCCCCceeEEEeeccCCchhhccccCCcCCcc------cCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeE
Q 043900 695 TACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKT------EEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPIT 768 (953)
Q Consensus 695 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 768 (953)
++|.. .+...++||||+++|+|.+++......... ......+++..++.++.|++.||+|||+. +|+
T Consensus 98 ~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~ 170 (316)
T 2xir_A 98 GACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI 170 (316)
T ss_dssp EEECC----TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred EEEec----CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 99743 235689999999999999999754321000 00122389999999999999999999999 999
Q ss_pred eecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCC
Q 043900 769 HCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKP 847 (953)
Q Consensus 769 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~p 847 (953)
||||||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++||||||+++|||+| |..|
T Consensus 171 H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p 250 (316)
T 2xir_A 171 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 250 (316)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999987654444444445668899999999999999999999999999999998 9999
Q ss_pred CCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHH
Q 043900 848 VDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMT 927 (953)
Q Consensus 848 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ 927 (953)
|........ ............ . ...+++++.+++.+||+.||++|||++
T Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~--------~----------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ 299 (316)
T 2xir_A 251 YPGVKIDEE-FCRRLKEGTRMR--------A----------------------PDYTTPEMYQTMLDCWHGEPSQRPTFS 299 (316)
T ss_dssp STTCCCSHH-HHHHHHHTCCCC--------C----------------------CTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred CcccchhHH-HHHHhccCccCC--------C----------------------CCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence 975332211 111111100000 0 001245688999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 043900 928 NVVRQLQSIKNILL 941 (953)
Q Consensus 928 evl~~L~~i~~~~~ 941 (953)
|+++.|+++.+...
T Consensus 300 ell~~L~~~~~~~~ 313 (316)
T 2xir_A 300 ELVEHLGNLLQANA 313 (316)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999987643
No 108
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.4e-39 Score=353.80 Aligned_cols=279 Identities=23% Similarity=0.344 Sum_probs=206.6
Q ss_pred HHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc--CCCCeeEEEeeecccc
Q 043900 624 QNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI--RHRNLVKILTACSGVD 701 (953)
Q Consensus 624 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~~~~~~~~~~ 701 (953)
..-....++|++.+.||+|+||.||+|++. ++.||||++.... ...+.+|.+++... +||||+++++++...
T Consensus 30 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~- 103 (337)
T 3mdy_A 30 LVQRTIAKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKG- 103 (337)
T ss_dssp HHHTTHHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEES-
T ss_pred ccccccccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccC-
Confidence 333445678999999999999999999986 5689999986432 23445566666554 899999999997543
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC-----CCCeEeecCCCCC
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC-----QPPITHCDLKPSN 776 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlkp~N 776 (953)
.......++||||+++|+|.++++. ..+++..++.++.|++.||+|||+.+ .++|+||||||+|
T Consensus 104 ~~~~~~~~lv~e~~~~g~L~~~l~~-----------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~N 172 (337)
T 3mdy_A 104 TGSWTQLYLITDYHENGSLYDYLKS-----------TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKN 172 (337)
T ss_dssp CGGGCEEEEEECCCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGG
T ss_pred CCCCCceEEEEeccCCCcHHHHhhc-----------cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHH
Confidence 1222578999999999999999952 25899999999999999999999751 3489999999999
Q ss_pred eEecCCCcEEEeccccceecCCCCCcc--cccccccccccccccccCCCCCCcc------cchHHHHHHHHHHHhC----
Q 043900 777 VLLDEEMMAHVSDFGLARFLPLSPAQT--SSIDAKGSIGYIAPEYGLGSEVSIN------GDVYSYGILLLELVTR---- 844 (953)
Q Consensus 777 Ill~~~~~~kL~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------sDv~slG~vl~elltg---- 844 (953)
|+++.++.+||+|||+++.+....... ......||+.|+|||++.+..++.+ +|||||||++|||+||
T Consensus 173 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~ 252 (337)
T 3mdy_A 173 ILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSG 252 (337)
T ss_dssp EEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred EEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcc
Confidence 999999999999999998764332211 1224569999999999988776665 9999999999999999
Q ss_pred ------CCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccC
Q 043900 845 ------KKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSME 918 (953)
Q Consensus 845 ------~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~ 918 (953)
..||...................... .... ........+++++.+++.+||+.
T Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-------------~~~~~~~~~~~~l~~li~~~l~~ 311 (337)
T 3mdy_A 253 GIVEEYQLPYHDLVPSDPSYEDMREIVCIKKL--------RPSF-------------PNRWSSDECLRQMGKLMTECWAH 311 (337)
T ss_dssp TBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC--------CCCC-------------CGGGGGSHHHHHHHHHHHHHSCS
T ss_pred cccccccccHhhhcCCCCchhhhHHHHhhhcc--------Cccc-------------cccchhhHHHHHHHHHHHHhhhh
Confidence 55555433333222222211111000 0000 00111226778899999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh
Q 043900 919 SPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 919 dP~~RPt~~evl~~L~~i~~~~ 940 (953)
||++|||++||++.|+++.+..
T Consensus 312 dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 312 NPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp SGGGSCCHHHHHHHHHHHHHTT
T ss_pred ChhhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999998764
No 109
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=6.4e-40 Score=352.03 Aligned_cols=259 Identities=23% Similarity=0.337 Sum_probs=197.6
Q ss_pred hcCCcccCcccccceeeEEEEEEcCC---CeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQG---KTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|.+..+ +..||+|+++.. .....+.+.+|+.++++++||||+++++++. .
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~ 87 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------E 87 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------S
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------c
Confidence 46789999999999999999998653 456999998643 3345677899999999999999999999863 2
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..++||||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~ 155 (281)
T 1mp8_A 88 NPVWIIMELCTLGELRSFLQVR---------KYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCV 155 (281)
T ss_dssp SSCEEEEECCTTEEHHHHHHHT---------TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEE
T ss_pred CccEEEEecCCCCCHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCE
Confidence 5678999999999999999532 22589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++....... .......+|+.|+|||++.+..++.++||||||+++|||++ |..||......+ .......
T Consensus 156 kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~~i~~ 232 (281)
T 1mp8_A 156 KLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIEN 232 (281)
T ss_dssp EECC--------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHT
T ss_pred EECccccccccCcccc-cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHHHHHc
Confidence 9999999987643221 12233447789999999998899999999999999999997 999997533221 1111110
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.. ... ....+++++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 233 ~~-----------~~~-------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 233 GE-----------RLP-------------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp TC-----------CCC-------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CC-----------CCC-------------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00 000 0012346788999999999999999999999999998764
No 110
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.5e-39 Score=358.33 Aligned_cols=276 Identities=21% Similarity=0.353 Sum_probs=213.2
Q ss_pred hcCCcccCcccccceeeEEEEEEc-------CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhc-CCCCeeEEEeeeccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILD-------QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGV 700 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~-------~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 700 (953)
.++|++.+.||+|+||.||+|++. .+++.||+|+++.. .....+.+.+|+++++++ +||||++++++|.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-- 111 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 111 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc--
Confidence 467999999999999999999985 34568999999743 334567889999999999 8999999999964
Q ss_pred ccCCCCceeEEEeeccCCchhhccccCCcCCcc------cCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 701 DYQGNDFKALVFEFMQNRSLEEWLHPITREDKT------EEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~------~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
..+..++||||+++|+|.+++......... ......+++.+++.++.||+.||+|||+. +|+||||||
T Consensus 112 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 185 (334)
T 2pvf_A 112 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 185 (334)
T ss_dssp ---SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred ---cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCcc
Confidence 346789999999999999999754321000 01123589999999999999999999999 999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCccc
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFE 853 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~ 853 (953)
+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |..||.....
T Consensus 186 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~ 265 (334)
T 2pvf_A 186 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV 265 (334)
T ss_dssp GGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred ceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH
Confidence 999999999999999999987754433333444557889999999988899999999999999999999 9999975321
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
. ............ .....++.++.+++.+||+.||++|||++|+++.|
T Consensus 266 ~--~~~~~~~~~~~~------------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L 313 (334)
T 2pvf_A 266 E--ELFKLLKEGHRM------------------------------DKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 313 (334)
T ss_dssp H--HHHHHHHHTCCC------------------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred H--HHHHHHhcCCCC------------------------------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence 1 111111100000 00012345688999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 043900 934 QSIKNILLGHRI 945 (953)
Q Consensus 934 ~~i~~~~~~~~~ 945 (953)
+++.........
T Consensus 314 ~~l~~~~~~~~~ 325 (334)
T 2pvf_A 314 DRILTLTTNEEY 325 (334)
T ss_dssp HHHHHHHC----
T ss_pred HHHHhccccCcc
Confidence 999887665543
No 111
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-40 Score=356.19 Aligned_cols=282 Identities=23% Similarity=0.283 Sum_probs=202.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-----hhhHHHHHHHHHHHhhc---CCCCeeEEEeeeccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-----HGAFKSFIAECNTLKNI---RHRNLVKILTACSGV 700 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~ 700 (953)
..++|++.+.||+|+||+||+|++..+++.||+|+++... ......+.+|+++++++ +||||++++++|...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4578999999999999999999998888999999996322 11234566777777766 499999999998654
Q ss_pred ccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec
Q 043900 701 DYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD 780 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 780 (953)
........++||||++ ++|.+++..... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~--------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~ 154 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP--------PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVT 154 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT--------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC--------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEc
Confidence 3333336899999996 599999864322 2489999999999999999999999 999999999999999
Q ss_pred CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHH
Q 043900 781 EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHN 860 (953)
Q Consensus 781 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~ 860 (953)
.++.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+. ...
T Consensus 155 ~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~ 230 (308)
T 3g33_A 155 SGGTVKLADFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ-LGK 230 (308)
T ss_dssp TTSCEEECSCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHH-HHH
T ss_pred CCCCEEEeeCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHH
Confidence 99999999999998654322 22345689999999999999999999999999999999999999976332211 111
Q ss_pred HHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 861 FARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 861 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
............+.. ........ .. ...+........+.++++.+++.+||+.||++|||++|+++
T Consensus 231 i~~~~~~~~~~~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 231 IFDLIGLPPEDDWPR-DVSLPRGA--FP--PRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp HHHHHCCCCTTTSCS-SCSSCGGG--SC--CCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHhCCCChhhccc-hhhccccc--cC--CCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 111111000000000 00000000 00 00000000011134567899999999999999999999875
No 112
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=2.8e-39 Score=370.25 Aligned_cols=283 Identities=20% Similarity=0.198 Sum_probs=201.8
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc-cCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD-YQGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~ 705 (953)
..++|++.+.||+|+||.||+|.+..+++.||||++... .....+.+.+|+.+++.++||||+++++++.... ....
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 357899999999999999999999999999999999743 3445678889999999999999999999975432 2334
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++ ++.+.+. ..+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~------------~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~ 203 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQ------------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTL 203 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHT------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred CeEEEEEeCCCC-CHHHHHh------------hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCE
Confidence 678999999975 5666653 2488999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+|+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .+.......
T Consensus 204 kl~DFG~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~-~~~~i~~~l 279 (464)
T 3ttj_A 204 KILDFGLARTAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQL 279 (464)
T ss_dssp EECCCCCC-----C---CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHH
T ss_pred EEEEEEeeeecCCC---cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhc
Confidence 99999999876432 22334569999999999999999999999999999999999999997632211 111111111
Q ss_pred C-C---------chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 L-P---------DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~-~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. + ......+..............................++++.+++.+||+.||++|||++|+++
T Consensus 280 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 280 GTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp CSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0 0 0011111000000000000000000000001112234678999999999999999999999986
No 113
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2.6e-40 Score=360.49 Aligned_cols=266 Identities=21% Similarity=0.317 Sum_probs=199.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||||+++.. .......+.+|++++++++||||+++++++... .....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE-TPAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEE-ETTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeecc-CCCCc
Confidence 46899999999999999999999988999999999743 233456789999999999999999999997543 12223
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.++++. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~k 156 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHT----------EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVK 156 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEE
T ss_pred ccEEEEecCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEE
Confidence 45999999999999999952 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........... .....
T Consensus 157 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~-~~~~~ 235 (311)
T 3ork_A 157 VMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQ-HVRED 235 (311)
T ss_dssp ECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH-HHHCC
T ss_pred EeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHH-HhcCC
Confidence 9999999876433221 222345689999999999999999999999999999999999999975322111000 00000
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHH-HHHHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNV-VRQLQSIKN 938 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev-l~~L~~i~~ 938 (953)
... + ......++.++.+++.+||+.||++||++.++ .+.+..+..
T Consensus 236 ~~~-------------------------~---~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 236 PIP-------------------------P---SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 281 (311)
T ss_dssp CCC-------------------------H---HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred CCC-------------------------c---ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence 000 0 00001245678899999999999999965554 455665543
No 114
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=361.38 Aligned_cols=274 Identities=18% Similarity=0.203 Sum_probs=212.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++... .......+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 106 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEAW 106 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCceeE
Confidence 46799999999999999999999888889999999776666778899999999999999999999997532 12345789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++|+|.+++..... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 107 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~d 177 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKD------KGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMD 177 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECC
T ss_pred EEEEeCCCCcHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEe
Confidence 99999999999999964321 134689999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcc-------cccccccccccccccccCCCC---CCcccchHHHHHHHHHHHhCCCCCCCcccCCccHH
Q 043900 790 FGLARFLPLSPAQT-------SSIDAKGSIGYIAPEYGLGSE---VSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLH 859 (953)
Q Consensus 790 fG~a~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~ 859 (953)
||.+.......... ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||...........
T Consensus 178 fg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~ 257 (317)
T 2buj_A 178 LGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVA 257 (317)
T ss_dssp CSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHH
T ss_pred cCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhh
Confidence 99987653211100 012234799999999987654 68999999999999999999999964322221111
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
........ .+ ....++.++.+++.+||+.||++|||++|+++.|+.+...
T Consensus 258 ~~~~~~~~-----------~~-------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~ 307 (317)
T 2buj_A 258 LAVQNQLS-----------IP-------------------QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP 307 (317)
T ss_dssp HHHHCC-------------CC-------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred HHhhccCC-----------CC-------------------ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence 11110000 00 0012345689999999999999999999999999988655
Q ss_pred hccc
Q 043900 940 LLGH 943 (953)
Q Consensus 940 ~~~~ 943 (953)
.++.
T Consensus 308 ~~~~ 311 (317)
T 2buj_A 308 APGQ 311 (317)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 4443
No 115
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.8e-39 Score=351.74 Aligned_cols=268 Identities=18% Similarity=0.264 Sum_probs=208.1
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
...++|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+|+++++.++|++++..+++|. ...+.
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~ 79 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDY 79 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEE----EETTE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeec----CCCCc
Confidence 345789999999999999999999988899999998754322 245788999999999888887777753 33477
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCCc
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEMM 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~ 784 (953)
.++||||+ +++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.
T Consensus 80 ~~lv~e~~-~~~L~~~~~~~---------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~ 146 (296)
T 4hgt_A 80 NVMVMELL-GPSLEDLFNFC---------SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNL 146 (296)
T ss_dssp EEEEEECC-CCBHHHHHHHT---------TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTC
T ss_pred eEEEEEcc-CCCHHHHHHHh---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCe
Confidence 89999999 99999998532 23589999999999999999999999 99999999999999 78899
Q ss_pred EEEeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc--c
Q 043900 785 AHVSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM--N 857 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~--~ 857 (953)
+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .
T Consensus 147 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~ 226 (296)
T 4hgt_A 147 VYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK 226 (296)
T ss_dssp EEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH
T ss_pred EEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Confidence 999999999877543321 122345699999999999999999999999999999999999999986433211 1
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
.............. .....+++++.+++.+||+.||++|||++|+++.|+++.
T Consensus 227 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~ 279 (296)
T 4hgt_A 227 YERISEKKMSTPIE---------------------------VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 279 (296)
T ss_dssp HHHHHHHHHHSCHH---------------------------HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhhcccccchhh---------------------------hhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 11111110000000 000123567999999999999999999999999999998
Q ss_pred HHhc
Q 043900 938 NILL 941 (953)
Q Consensus 938 ~~~~ 941 (953)
+...
T Consensus 280 ~~~~ 283 (296)
T 4hgt_A 280 HRQG 283 (296)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7754
No 116
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=2.5e-40 Score=363.57 Aligned_cols=281 Identities=24% Similarity=0.296 Sum_probs=213.1
Q ss_pred hcCCcccCcccccceeeEEEEEE----cCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGIL----DQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|++ ..+++.||||++........+.+.+|++++++++||||+++++++.. .+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCC
Confidence 35789999999999999999994 56778999999987766677889999999999999999999998652 244
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~ 166 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRH---------RARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHV 166 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHH---------GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEE
T ss_pred ceEEEEEeecCCCCHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCE
Confidence 6789999999999999999632 22589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||.++........ .......||+.|+|||++.+..++.++||||||+++|||++|+.||....... ...+...
T Consensus 167 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--~~~~~~~ 244 (327)
T 3lxl_A 167 KIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF--LRMMGCE 244 (327)
T ss_dssp EECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH--HHHCC--
T ss_pred EEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh--hhhcccc
Confidence 99999999987543322 12233458889999999999999999999999999999999999986421110 0000000
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcc
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~ 942 (953)
..........+... ...+......+++++.+++.+||+.||++|||++|+++.|+.+.....+
T Consensus 245 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~ 307 (327)
T 3lxl_A 245 RDVPALSRLLELLE---------------EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRG 307 (327)
T ss_dssp --CCHHHHHHHHHH---------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC------
T ss_pred cccccHHHHHHHhh---------------cccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcC
Confidence 00000000000000 0000111123456799999999999999999999999999998655443
No 117
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=6.7e-40 Score=365.50 Aligned_cols=250 Identities=22% Similarity=0.282 Sum_probs=196.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.++||+|+||.||+|+++.+++.||+|+++.. .......+.+|..++.++ +||||+++++++. ..
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~-----~~ 125 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQ-----TE 125 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEE-----CS
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEE-----EC
Confidence 45799999999999999999999999999999999743 223345678899999887 8999999999854 45
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|..++.. ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+
T Consensus 126 ~~~~lV~E~~~gg~L~~~l~~----------~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~i 192 (396)
T 4dc2_A 126 SRLFFVIEYVNGGDLMFHMQR----------QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHI 192 (396)
T ss_dssp SEEEEEEECCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCE
T ss_pred CEEEEEEEcCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCE
Confidence 789999999999999999852 23689999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc---cHHHHH
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM---NLHNFA 862 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~---~~~~~~ 862 (953)
||+|||+|+..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||......+. ......
T Consensus 193 kL~DFGla~~~~~~--~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~ 270 (396)
T 4dc2_A 193 KLTDYGMCKEGLRP--GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL 270 (396)
T ss_dssp EECCCTTCBCCCCT--TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHH
T ss_pred EEeecceeeecccC--CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHH
Confidence 99999999853221 2233446799999999999999999999999999999999999999964322110 000000
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
.. .+..... ..+...+.++.+++.+||+.||++||++
T Consensus 271 ~~-------~i~~~~~--------------------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 271 FQ-------VILEKQI--------------------RIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp HH-------HHHHCCC--------------------CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred HH-------HHhcccc--------------------CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 00 0000000 0001234568899999999999999996
No 118
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=360.82 Aligned_cols=252 Identities=21% Similarity=0.252 Sum_probs=188.4
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++... ..+.+.+|++++++++||||++++++|. .....
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~~~ 123 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE-----TPTEI 123 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----cCCeE
Confidence 4567999999999999999999999988899999997543 3466889999999999999999999964 34779
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC---CCcE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE---EMMA 785 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~ 785 (953)
++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+
T Consensus 124 ~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~ 190 (349)
T 2w4o_A 124 SLVLELVTGGELFDRIVE----------KGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPL 190 (349)
T ss_dssp EEEECCCCSCBHHHHHTT----------CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCE
T ss_pred EEEEEeCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCE
Confidence 999999999999999852 23589999999999999999999999 9999999999999975 8899
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.................
T Consensus 191 kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~ 267 (349)
T 2w4o_A 191 KIADFGLSKIVEHQV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCE 267 (349)
T ss_dssp EECCCC-------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTC
T ss_pred EEccCccccccCccc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCC
Confidence 999999998664321 22345689999999999999999999999999999999999999965322211111111100
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ...+ .....+.++.+++.+||+.||++|||+.|+++
T Consensus 268 ~~-----~~~~-----------------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 268 YY-----FISP-----------------------WWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp CC-----CCTT-----------------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred Cc-----cCCc-----------------------hhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00 0000 00123456889999999999999999999986
No 119
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.4e-39 Score=374.66 Aligned_cols=201 Identities=26% Similarity=0.345 Sum_probs=160.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeec--cchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNL--LHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++..+++.||||++.. ......+.+.+|++++++++||||+++++++..........
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 4689999999999999999999998889999999864 23345678899999999999999999999986654555678
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.|+||||+ +++|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+||
T Consensus 132 ~~lv~e~~-~~~L~~~~~~----------~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl 197 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRT----------PVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKV 197 (458)
T ss_dssp EEEEECCC-SEEHHHHHHS----------SCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEE
T ss_pred EEEEEecc-ccchhhhccc----------CCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEee
Confidence 99999998 5799998852 23689999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCc-------------------------cccccccccccccccccc-CCCCCCcccchHHHHHHHHHH
Q 043900 788 SDFGLARFLPLSPAQ-------------------------TSSIDAKGSIGYIAPEYG-LGSEVSINGDVYSYGILLLEL 841 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~sDv~slG~vl~el 841 (953)
+|||+|+........ ......+||+.|+|||++ .+..++.++|||||||++|||
T Consensus 198 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~el 277 (458)
T 3rp9_A 198 CDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAEL 277 (458)
T ss_dssp CCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHH
T ss_pred cccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHH
Confidence 999999876432211 123345689999999975 566799999999999999999
Q ss_pred HhC
Q 043900 842 VTR 844 (953)
Q Consensus 842 ltg 844 (953)
++|
T Consensus 278 ltg 280 (458)
T 3rp9_A 278 LNM 280 (458)
T ss_dssp HTT
T ss_pred HHh
Confidence 993
No 120
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=356.95 Aligned_cols=258 Identities=20% Similarity=0.284 Sum_probs=200.6
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc------
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY------ 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------ 702 (953)
.++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|++++++++||||++++++|.....
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 457999999999999999999999888899999997433 3456789999999999999999999998754211
Q ss_pred ----------------------------------------------CCCCceeEEEeeccCCchhhccccCCcCCcccCC
Q 043900 703 ----------------------------------------------QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEA 736 (953)
Q Consensus 703 ----------------------------------------------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~ 736 (953)
......++||||+++|+|.+++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~------- 157 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS------- 157 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS-------
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC-------
Confidence 112347999999999999999974332
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCc----------cccc
Q 043900 737 PRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQ----------TSSI 806 (953)
Q Consensus 737 ~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~----------~~~~ 806 (953)
....++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++........ ....
T Consensus 158 ~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~ 234 (332)
T 3qd2_B 158 LEDREHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHT 234 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccccccccccccc
Confidence 23457778999999999999999999 9999999999999999999999999999987543211 1223
Q ss_pred ccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhh
Q 043900 807 DAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLA 886 (953)
Q Consensus 807 ~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 886 (953)
...||+.|+|||++.+..++.++||||+||++|||++|..|+... ...... .....
T Consensus 235 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~~--------~~~~~--------- 290 (332)
T 3qd2_B 235 GQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIITD--------VRNLK--------- 290 (332)
T ss_dssp SCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHHH--------HHTTC---------
T ss_pred ccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHHH--------hhccC---------
Confidence 456999999999999999999999999999999999987764320 000000 00000
Q ss_pred hcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 887 VHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
........++++.+++.+||+.||++|||++|+++
T Consensus 291 ----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 291 ----------FPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp ----------CCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred ----------CCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 00111234566789999999999999999999986
No 121
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.4e-39 Score=352.85 Aligned_cols=266 Identities=24% Similarity=0.375 Sum_probs=206.6
Q ss_pred cCCcccCcccccceeeEEEEEEcCC---CeEEEEEEeec-cchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQG---KTTVAVKVFNL-LHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~vavK~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.+|++.+.||+|+||+||+|++..+ ...||+|.++. ......+.+.+|+.++++++||||++++++|. ..+.
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~~~~ 100 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSEG 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEC----CSSS
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEE----cCCC
Confidence 4688899999999999999997543 34589999864 33445678899999999999999999999864 3346
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 101 ~~~~v~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~k 168 (298)
T 3f66_A 101 SPLVVLPYMKHGDLRNFIRNE---------THNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVK 168 (298)
T ss_dssp CCEEEEECCTTCBHHHHHHCT---------TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEE
T ss_pred ceEEEEeCCCCCCHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEE
Confidence 789999999999999999632 23578999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCC--cccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 787 VSDFGLARFLPLSPA--QTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 787 L~DfG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
|+|||.++....... ........+|+.|+|||++.+..++.++||||+|+++|||++ |.+||......+ ......
T Consensus 169 l~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~--~~~~~~ 246 (298)
T 3f66_A 169 VADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLL 246 (298)
T ss_dssp ECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT--HHHHHH
T ss_pred ECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH--HHHHHh
Confidence 999999986643221 122233457889999999999999999999999999999999 555655422211 111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhccc
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGH 943 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~ 943 (953)
..... .. +..++.++.+++.+||+.||++|||++|+++.|+++.....+.
T Consensus 247 ~~~~~-----------~~-------------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 247 QGRRL-----------LQ-------------------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp TTCCC-----------CC-------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred cCCCC-----------CC-------------------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 00000 00 0022456889999999999999999999999999998877665
Q ss_pred c
Q 043900 944 R 944 (953)
Q Consensus 944 ~ 944 (953)
.
T Consensus 297 ~ 297 (298)
T 3f66_A 297 H 297 (298)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-39 Score=348.98 Aligned_cols=268 Identities=24% Similarity=0.367 Sum_probs=209.7
Q ss_pred CCcccCcccccceeeEEEEEEcCCCe---EEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 632 GFASANEIGVGSFGSVYKGILDQGKT---TVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 632 ~~~~~~~ig~G~~g~Vy~~~~~~~~~---~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.|...+.||+|+||+||+|++..+.+ .||+|+++.. .....+.+.+|+.++++++||||+++++++.. .+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence 45667899999999999999765443 7999998743 33456788999999999999999999999743 2344
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+.+|+|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~---------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl 165 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSP---------QRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKV 165 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCT---------TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEE
T ss_pred cEEEEecccCCCHHHHHhcc---------ccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEe
Confidence 58999999999999999632 23589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCC--CcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 788 SDFGLARFLPLSP--AQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 788 ~DfG~a~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
+|||+++...... .........+|+.|+|||.+.+..++.++||||||+++|||++|..|+...... ..........
T Consensus 166 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-~~~~~~~~~~ 244 (298)
T 3pls_A 166 ADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-FDLTHFLAQG 244 (298)
T ss_dssp CCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-GGHHHHHHTT
T ss_pred CcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-HHHHHHhhcC
Confidence 9999998654322 112223445889999999999999999999999999999999966654332111 1111111111
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhccccc
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGHRI 945 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~~~ 945 (953)
.... ....+++++.+++.+||+.||++|||++|+++.|+++.+...+..+
T Consensus 245 ~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~~~ 294 (298)
T 3pls_A 245 RRLP------------------------------QPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDHY 294 (298)
T ss_dssp CCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSCCB
T ss_pred CCCC------------------------------CCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhccch
Confidence 0000 0012345688999999999999999999999999999998877665
Q ss_pred c
Q 043900 946 V 946 (953)
Q Consensus 946 ~ 946 (953)
.
T Consensus 295 ~ 295 (298)
T 3pls_A 295 V 295 (298)
T ss_dssp C
T ss_pred h
Confidence 4
No 123
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.7e-39 Score=346.40 Aligned_cols=254 Identities=22% Similarity=0.307 Sum_probs=205.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.+++.++||||+++++++. .....
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 80 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEE-----cCCEE
Confidence 467999999999999999999999888899999997433 344578899999999999999999999964 34778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +++||||||+||+++.++.+||+
T Consensus 81 ~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 147 (276)
T 2yex_A 81 YLFLEYCSGGELFDRIEP----------DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKIS 147 (276)
T ss_dssp EEEEECCTTEEGGGGSBT----------TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred EEEEEecCCCcHHHHHhh----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEe
Confidence 999999999999999852 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||.+................|++.|+|||++.+..+ +.++||||||+++|||++|+.||............+......
T Consensus 148 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~ 227 (276)
T 2yex_A 148 DFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY 227 (276)
T ss_dssp CCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT
T ss_pred eCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc
Confidence 9999987643322223344568999999999988765 788999999999999999999997643332222222111000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. ......+.++.+++.+||+.||++|||++|+++
T Consensus 228 ~------------------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 228 L------------------------------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp S------------------------------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred c------------------------------CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0 000123456889999999999999999999875
No 124
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=360.17 Aligned_cols=259 Identities=22% Similarity=0.356 Sum_probs=200.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeE----EEEEEeec-cchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTT----VAVKVFNL-LHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~----vavK~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
.++|++.+.||+|+||+||+|++..+++. ||+|.++. ......+.+.+|+.++++++||||++++++|..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----- 88 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence 35799999999999999999999776654 46776643 234456789999999999999999999999753
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
...++|+||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 89 -~~~~~v~~~~~~g~L~~~l~~~---------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~ 155 (327)
T 3lzb_A 89 -STVQLITQLMPFGCLLDYVREH---------KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQH 155 (327)
T ss_dssp -SSEEEEECCCSSCBHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTE
T ss_pred -CCceEEEEecCCCcHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCC
Confidence 3478999999999999999632 23589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||....... ......
T Consensus 156 ~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~ 233 (327)
T 3lzb_A 156 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILE 233 (327)
T ss_dssp EEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHH
T ss_pred EEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHH
Confidence 99999999987754443334444557889999999999999999999999999999999 999997532221 111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~ 938 (953)
..... .....++.++.+++.+||+.||++|||++|+++.|+++.+
T Consensus 234 ~~~~~------------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 234 KGERL------------------------------PQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTCCC------------------------------CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred cCCCC------------------------------CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 10000 0001234568899999999999999999999999999874
No 125
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=7.3e-40 Score=353.14 Aligned_cols=262 Identities=25% Similarity=0.407 Sum_probs=213.7
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|++..+++.||+|+++... ...+.+.+|++++++++||||+++++++. .....
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 84 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----REPPF 84 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSSE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCE
Confidence 4667999999999999999999999988899999997543 34578899999999999999999999964 34778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 85 ~~v~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~ 153 (288)
T 3kfa_A 85 YIITEFMTYGNLLDYLRECN--------RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVA 153 (288)
T ss_dssp EEEEECCTTEEHHHHHHHCC--------TTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred EEEEEcCCCCcHHHHHHhcc--------cCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEc
Confidence 99999999999999996432 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||.+....... ........+|+.|+|||++.+..++.++||||+|+++|+|++ |..||....... ..........
T Consensus 154 Dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~--~~~~~~~~~~ 230 (288)
T 3kfa_A 154 DFGLSRLMTGDT-YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDYR 230 (288)
T ss_dssp CCCGGGTSCSSS-SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTTCC
T ss_pred cCccceeccCCc-cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhccCC
Confidence 999998764332 223334557889999999998999999999999999999999 999987532211 1111111000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHh
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~ 940 (953)
. ..+..+++++.+++.+||+.||++|||++|+++.|+++....
T Consensus 231 ------------~------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~ 273 (288)
T 3kfa_A 231 ------------M------------------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES 273 (288)
T ss_dssp ------------C------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ------------C------------------CCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence 0 000123457899999999999999999999999999886553
No 126
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=365.46 Aligned_cols=288 Identities=19% Similarity=0.235 Sum_probs=215.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|.+.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++... .....
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---~~~~~ 84 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRHK 84 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCCE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccC---CCCee
Confidence 357999999999999999999999988899999997433 33456788999999999999999999987532 33478
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe----cCCCc
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL----DEEMM 784 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~~ 784 (953)
++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.
T Consensus 85 ~lv~e~~~~g~L~~~l~~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 154 (396)
T 4eut_A 85 VLIMEFCPCGSLYTVLEEPSN-------AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSV 154 (396)
T ss_dssp EEEECCCTTEEHHHHTTSGGG-------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEE
T ss_pred EEEEecCCCCCHHHHHHhhhc-------ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCcee
Confidence 999999999999999964322 12489999999999999999999999 99999999999999 77888
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCC--------CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG--------SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM 856 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~ 856 (953)
+||+|||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 155 ~kL~DFG~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~ 231 (396)
T 4eut_A 155 YKLTDFGAARELEDD---EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR 231 (396)
T ss_dssp EEECCGGGCEECCCG---GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTT
T ss_pred EEEecCCCceEccCC---CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccc
Confidence 999999999876432 22234569999999999765 5678899999999999999999999975433322
Q ss_pred cHHHHHHh--hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHH
Q 043900 857 NLHNFARM--ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQ 934 (953)
Q Consensus 857 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~ 934 (953)
........ ..+......+......... ... ............+..+.+++.+||++||++|||++|+++.++
T Consensus 232 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~ 305 (396)
T 4eut_A 232 NKEVMYKIITGKPSGAISGVQKAENGPID---WSG---DMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (396)
T ss_dssp CHHHHHHHHHSCCTTCCEEEECSTTCCEE---EES---SCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHhcCCCcccchhheeccCCCcc---cCc---cCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHH
Confidence 22221111 1111111111000000000 000 000011122456778999999999999999999999999998
Q ss_pred HHHHH
Q 043900 935 SIKNI 939 (953)
Q Consensus 935 ~i~~~ 939 (953)
++.+.
T Consensus 306 ~il~~ 310 (396)
T 4eut_A 306 DILHR 310 (396)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 88654
No 127
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=3.9e-40 Score=372.35 Aligned_cols=260 Identities=18% Similarity=0.190 Sum_probs=204.3
Q ss_pred HHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 626 LYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 626 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
+....++|++.++||+|+||+||+|++..+++.||+|+++... ......+.+|..++..++||||++++++|.
T Consensus 69 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~---- 144 (437)
T 4aw2_A 69 MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ---- 144 (437)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE----
T ss_pred ccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe----
Confidence 3345678999999999999999999999999999999996422 222344889999999999999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
+.+..++||||+++|+|.+++... ...+++..++.++.||+.||+|||+. +|+||||||+|||++.+
T Consensus 145 -~~~~~~lV~Ey~~gg~L~~~l~~~---------~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~ 211 (437)
T 4aw2_A 145 -DDNNLYLVMDYYVGGDLLTLLSKF---------EDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMN 211 (437)
T ss_dssp -CSSEEEEEECCCTTCBHHHHHHTT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred -eCCEEEEEEecCCCCcHHHHHHHc---------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCC
Confidence 447899999999999999999632 23589999999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccC-----CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL-----GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
+.+||+|||+|+....... ......+||+.|+|||++. +..++.++|||||||++|||++|+.||......+ .
T Consensus 212 g~vkL~DFGla~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~-~ 289 (437)
T 4aw2_A 212 GHIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE-T 289 (437)
T ss_dssp SCEEECCCTTCEECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-H
T ss_pred CCEEEcchhhhhhcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH-H
Confidence 9999999999987643322 2233457999999999986 5678999999999999999999999997532111 1
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCC--CCCHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGD--RMNMTNVVR 931 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPt~~evl~ 931 (953)
+..... .. ... ..... ....++++.+++.+|+..+|++ ||+++|+++
T Consensus 290 ~~~i~~----~~-~~~---~~p~~-------------------~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 290 YGKIMN----HK-ERF---QFPTQ-------------------VTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHHHHT----HH-HHC---CCCSS-------------------CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred HHhhhh----cc-ccc---cCCcc-------------------cccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 111110 00 000 00000 0013456889999999998888 999999876
No 128
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=2.7e-39 Score=368.42 Aligned_cols=207 Identities=24% Similarity=0.314 Sum_probs=172.6
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+.+|++++++++||||+++++++.........
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 356899999999999999999999999999999999642 334567889999999999999999999997655444446
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||++ |+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+|
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~----------~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~k 169 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKT----------PIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVK 169 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHS----------SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEE
T ss_pred eEEEEEecCC-cCHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEE
Confidence 7999999995 699999852 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCc--------------------cccccccccccccccccc-CCCCCCcccchHHHHHHHHHHHhCC
Q 043900 787 VSDFGLARFLPLSPAQ--------------------TSSIDAKGSIGYIAPEYG-LGSEVSINGDVYSYGILLLELVTRK 845 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~sDv~slG~vl~elltg~ 845 (953)
|+|||+|+........ ......+||+.|+|||++ .+..++.++||||+||++|||++|.
T Consensus 170 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~ 249 (432)
T 3n9x_A 170 VCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNML 249 (432)
T ss_dssp ECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTC
T ss_pred EccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcc
Confidence 9999999876533211 123456799999999985 5667999999999999999999866
Q ss_pred CCCC
Q 043900 846 KPVD 849 (953)
Q Consensus 846 ~pf~ 849 (953)
.||.
T Consensus 250 ~p~~ 253 (432)
T 3n9x_A 250 QSHI 253 (432)
T ss_dssp TTTC
T ss_pred cccc
Confidence 6554
No 129
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=8.4e-40 Score=361.83 Aligned_cols=270 Identities=18% Similarity=0.236 Sum_probs=203.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcC---CCeEEEEEEeeccchh-----------hHHHHHHHHHHHhhcCCCCeeEEEe
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQ---GKTTVAVKVFNLLHHG-----------AFKSFIAECNTLKNIRHRNLVKILT 695 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~~~~ 695 (953)
.++|++.+.||+|+||.||+|++.. ++..||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 3579999999999999999999986 6678999998644321 1234667888999999999999999
Q ss_pred eecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCC
Q 043900 696 ACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPS 775 (953)
Q Consensus 696 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 775 (953)
++... +.+....++||||+ +++|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+
T Consensus 116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~ 180 (345)
T 2v62_A 116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQ----------NGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAA 180 (345)
T ss_dssp EEEEE-SSSCEEEEEEEECE-EEEHHHHCBG----------GGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred ccccc-cCCCcEEEEEEecc-CCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHH
Confidence 97653 34467899999999 9999999952 22689999999999999999999999 9999999999
Q ss_pred CeEecCCC--cEEEeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCC
Q 043900 776 NVLLDEEM--MAHVSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPV 848 (953)
Q Consensus 776 NIll~~~~--~~kL~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf 848 (953)
||+++.++ .+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 181 NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf 260 (345)
T 2v62_A 181 NLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPW 260 (345)
T ss_dssp GEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 99999887 9999999999876432211 1123456999999999999999999999999999999999999999
Q ss_pred CCcccCCccHHHHHHh---hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCC
Q 043900 849 DSMFEGDMNLHNFARM---ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMN 925 (953)
Q Consensus 849 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt 925 (953)
................ ..+....... ....++.++.+++.+||+.||++|||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~l~~li~~~l~~dp~~Rps 315 (345)
T 2v62_A 261 EQNLKDPVAVQTAKTNLLDELPQSVLKWA-------------------------PSGSSCCEIAQFLVCAHSLAYDEKPN 315 (345)
T ss_dssp GGGTTCHHHHHHHHHHHHHTTTHHHHHHS-------------------------CTTSCCHHHHHHHHHHHTCCTTCCCC
T ss_pred cccccccHHHHHHHHhhcccccHHHHhhc-------------------------cccccHHHHHHHHHHHhhcCcccCCC
Confidence 6432222111111111 0111111000 00023557999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 043900 926 MTNVVRQLQSIKNI 939 (953)
Q Consensus 926 ~~evl~~L~~i~~~ 939 (953)
++||++.|+++...
T Consensus 316 ~~~l~~~L~~~~~~ 329 (345)
T 2v62_A 316 YQALKKILNPHGIP 329 (345)
T ss_dssp HHHHHHHHCTTCCC
T ss_pred HHHHHHHHhccCCc
Confidence 99999999886543
No 130
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=360.56 Aligned_cols=252 Identities=20% Similarity=0.234 Sum_probs=198.2
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeEEEeec
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKALVFEFM 715 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~ 715 (953)
.+.||+|+||.||+|++..+++.||+|+++.......+.+.+|++++++++||||++++++|. ..+..++||||+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~E~~ 168 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVMEYV 168 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEEECC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEEeCC
Confidence 568999999999999999888899999998766666788999999999999999999999964 347799999999
Q ss_pred cCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe--cCCCcEEEeccccc
Q 043900 716 QNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL--DEEMMAHVSDFGLA 793 (953)
Q Consensus 716 ~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll--~~~~~~kL~DfG~a 793 (953)
++|+|.+++... ...+++.+++.++.||+.||+|||+. +|+||||||+|||+ +.++.+||+|||++
T Consensus 169 ~~~~L~~~l~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a 236 (373)
T 2x4f_A 169 DGGELFDRIIDE---------SYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLA 236 (373)
T ss_dssp TTCEEHHHHHHT---------GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSC
T ss_pred CCCcHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCc
Confidence 999999988532 23589999999999999999999999 99999999999999 56789999999999
Q ss_pred eecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhh
Q 043900 794 RFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDI 873 (953)
Q Consensus 794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (953)
+.+.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .+.........
T Consensus 237 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~i~~~~~~------ 306 (373)
T 2x4f_A 237 RRYKPRE---KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE-TLNNILACRWD------ 306 (373)
T ss_dssp EECCTTC---BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCCC------
T ss_pred eecCCcc---ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhccCC------
Confidence 9775332 2223469999999999999999999999999999999999999997532211 11111111000
Q ss_pred ccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH--HHHHH
Q 043900 874 VDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR--QLQSI 936 (953)
Q Consensus 874 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~--~L~~i 936 (953)
... ......++++.+++.+||+.||++|||++|+++ .+++.
T Consensus 307 ------~~~----------------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~ 349 (373)
T 2x4f_A 307 ------LED----------------EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH 349 (373)
T ss_dssp ------SCS----------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred ------CCh----------------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence 000 000123457899999999999999999999987 44443
No 131
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.6e-39 Score=365.70 Aligned_cols=206 Identities=26% Similarity=0.374 Sum_probs=166.8
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeec--cchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNL--LHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQG 704 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~--~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~ 704 (953)
...++|++.+.||+|+||.||+|.+..+++.||||++.. ........+.+|+.+++++. ||||+++++++.. .+
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~~ 82 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---DN 82 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---TT
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---CC
Confidence 346789999999999999999999999999999999853 23445677889999999997 9999999999753 23
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
....++||||++ ++|.+++.. ..+++..+..++.|++.||+|||+. ||+||||||+|||++.++.
T Consensus 83 ~~~~~lv~e~~~-~~L~~~~~~-----------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~ 147 (388)
T 3oz6_A 83 DRDVYLVFDYME-TDLHAVIRA-----------NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECH 147 (388)
T ss_dssp SSCEEEEEECCS-EEHHHHHHH-----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCC
T ss_pred CCEEEEEecccC-cCHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCC
Confidence 357899999996 689998852 3588999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCC-------------------CcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhC
Q 043900 785 AHVSDFGLARFLPLSP-------------------AQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTR 844 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~-------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg 844 (953)
+||+|||+|+.+.... .........||+.|+|||++.+ ..++.++||||+||++|||++|
T Consensus 148 ~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g 227 (388)
T 3oz6_A 148 VKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCG 227 (388)
T ss_dssp EEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred EEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhC
Confidence 9999999998764311 1112234579999999999877 6789999999999999999999
Q ss_pred CCCCCCc
Q 043900 845 KKPVDSM 851 (953)
Q Consensus 845 ~~pf~~~ 851 (953)
+.||.+.
T Consensus 228 ~~pf~~~ 234 (388)
T 3oz6_A 228 KPIFPGS 234 (388)
T ss_dssp SCSCCCS
T ss_pred CCCCCCC
Confidence 9999764
No 132
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.3e-39 Score=350.19 Aligned_cols=259 Identities=24% Similarity=0.368 Sum_probs=204.8
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|.+..+ ..||+|+++.... ..+.+.+|++++++++||||+++++++. .....
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 94 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQ-YDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT-----KQRPI 94 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTT-EEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSE
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCC-CeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEe-----cCCCe
Confidence 356799999999999999999998854 5899999975432 3467899999999999999999999964 44778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 95 ~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~ 162 (283)
T 3gen_A 95 FIITEYMANGCLLNYLREM---------RHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVS 162 (283)
T ss_dssp EEEECCCTTCBHHHHHHCG---------GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEEC
T ss_pred EEEEeccCCCcHHHHHHHh---------ccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEc
Confidence 9999999999999999632 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||.++...... ........+|+.|+|||++.+..++.++||||+|+++|||+| |+.||....... .........
T Consensus 163 Dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~--~~~~~~~~~- 238 (283)
T 3gen_A 163 DFGLSRYVLDDE-YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE--TAEHIAQGL- 238 (283)
T ss_dssp STTGGGGBCCHH-HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHTTC-
T ss_pred cccccccccccc-cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH--HHHHHhccc-
Confidence 999998654221 122233447788999999998899999999999999999998 999997532211 111010000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.... +...++.+.+++.+||+.||++|||++|+++.|+++.+.
T Consensus 239 -------~~~~----------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 239 -------RLYR----------------------PHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp -------CCCC----------------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------CCCC----------------------CCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 0000 001235688999999999999999999999999998754
No 133
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=8e-40 Score=360.69 Aligned_cols=275 Identities=21% Similarity=0.291 Sum_probs=214.2
Q ss_pred HHhhcCCcccCcccccceeeEEEEEEcCCC-----eEEEEEEeeccc-hhhHHHHHHHHHHHhhc-CCCCeeEEEeeecc
Q 043900 627 YNATDGFASANEIGVGSFGSVYKGILDQGK-----TTVAVKVFNLLH-HGAFKSFIAECNTLKNI-RHRNLVKILTACSG 699 (953)
Q Consensus 627 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~-----~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~ 699 (953)
....++|++.+.||+|+||.||+|.+...+ +.||+|+++... ....+.+.+|+.+++++ +||||++++++|.
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~- 120 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT- 120 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe-
Confidence 334578999999999999999999987654 379999997543 34567789999999999 8999999999964
Q ss_pred cccCCCCceeEEEeeccCCchhhccccCCcCCc----ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCC
Q 043900 700 VDYQGNDFKALVFEFMQNRSLEEWLHPITREDK----TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPS 775 (953)
Q Consensus 700 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 775 (953)
..+..++||||+++|+|.+++........ .......+++..++.++.|++.||+|||+. +|+||||||+
T Consensus 121 ----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~ 193 (333)
T 2i1m_A 121 ----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAAR 193 (333)
T ss_dssp ----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred ----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccc
Confidence 34678999999999999999964321100 001123589999999999999999999999 9999999999
Q ss_pred CeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccC
Q 043900 776 NVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEG 854 (953)
Q Consensus 776 NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~ 854 (953)
||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||+| |..||......
T Consensus 194 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~ 273 (333)
T 2i1m_A 194 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN 273 (333)
T ss_dssp GCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS
T ss_pred eEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh
Confidence 99999999999999999987654433333444557889999999999999999999999999999999 99999753222
Q ss_pred CccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHH
Q 043900 855 DMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQ 934 (953)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~ 934 (953)
. ............. .+..+++++.+++.+||+.||++|||++|+++.|+
T Consensus 274 ~-~~~~~~~~~~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 322 (333)
T 2i1m_A 274 S-KFYKLVKDGYQMA------------------------------QPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQ 322 (333)
T ss_dssp H-HHHHHHHHTCCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred H-HHHHHHhcCCCCC------------------------------CCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHH
Confidence 1 1111111110000 00012456889999999999999999999999999
Q ss_pred HHHHHh
Q 043900 935 SIKNIL 940 (953)
Q Consensus 935 ~i~~~~ 940 (953)
++....
T Consensus 323 ~~~~~~ 328 (333)
T 2i1m_A 323 EQAQED 328 (333)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987654
No 134
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=6.4e-40 Score=360.29 Aligned_cols=250 Identities=22% Similarity=0.308 Sum_probs=201.1
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~ 703 (953)
...++|.+.+.||+|+||.||+|+++.+++.||+|+++... ......+..|..++..+ +||||+++++++.
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~----- 88 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ----- 88 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEE-----
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEE-----
Confidence 34578999999999999999999999999999999997432 33456778899999887 8999999999954
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
..+..++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 89 ~~~~~~lv~E~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g 155 (345)
T 1xjd_A 89 TKENLFFVMEYLNGGDLMYHIQS----------CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDG 155 (345)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred eCCEEEEEEeCCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCC
Confidence 44789999999999999999952 23589999999999999999999999 999999999999999999
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
.+||+|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .......
T Consensus 156 ~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~ 231 (345)
T 1xjd_A 156 HIKIADFGMCKENMLGD--AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHSIR 231 (345)
T ss_dssp CEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHH
T ss_pred CEEEeEChhhhhcccCC--CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHH
Confidence 99999999998643221 2234457999999999999999999999999999999999999999753211 1110000
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHH-HHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMT-NVV 930 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~-evl 930 (953)
.. ..... ...++++.+++.+||+.||++||++. |++
T Consensus 232 ~~---------~~~~p----------------------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 232 MD---------NPFYP----------------------RWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HC---------CCCCC----------------------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred hC---------CCCCC----------------------cccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 00 00000 01245688999999999999999997 664
No 135
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.8e-39 Score=365.76 Aligned_cols=287 Identities=17% Similarity=0.168 Sum_probs=205.3
Q ss_pred hhcCCcccCccccc--ceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 629 ATDGFASANEIGVG--SFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G--~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
..++|++.+.||+| +||.||+|++..+++.||||+++... ....+.+.+|+.++++++||||+++++++..
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----- 97 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA----- 97 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEE-----
Confidence 35679999999999 99999999999888999999997432 4455778899999999999999999999643
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
++..++||||+++|+|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 98 ~~~~~lv~e~~~~~~L~~~l~~~~~--------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~ 166 (389)
T 3gni_B 98 DNELWVVTSFMAYGSAKDLICTHFM--------DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGK 166 (389)
T ss_dssp TTEEEEEEECCTTCBHHHHHHHTCT--------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCC
T ss_pred CCEEEEEEEccCCCCHHHHHhhhcc--------cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCC
Confidence 4789999999999999999964322 3589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCC-----CcccccccccccccccccccCC--CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 785 AHVSDFGLARFLPLSP-----AQTSSIDAKGSIGYIAPEYGLG--SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
+||+|||.+....... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+..
T Consensus 167 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~ 246 (389)
T 3gni_B 167 VYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQML 246 (389)
T ss_dssp EEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHH
T ss_pred EEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 9999999987542211 1112223468999999999987 57999999999999999999999999764332211
Q ss_pred HHHHHHhhCCchh-------hhh---ccccccC-Cchh-hhhcccc--hhhhhhhhhHHHHHHHHHHHhhccccCCCCCC
Q 043900 858 LHNFARMALPDHV-------VDI---VDSTLLS-DDED-LAVHGNQ--RQRQARINSKIECLVAMVRIGVACSMESPGDR 923 (953)
Q Consensus 858 ~~~~~~~~~~~~~-------~~~---~~~~l~~-~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R 923 (953)
... .....+... ... ....... ...+ ....... .............++++.+++.+||+.||++|
T Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R 325 (389)
T 3gni_B 247 LEK-LNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDAR 325 (389)
T ss_dssp HHC---------------------------------------------------------CCHHHHHHHHHHTCSCTTTS
T ss_pred HHH-hcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccC
Confidence 111 100000000 000 0000000 0000 0000000 00000111223446779999999999999999
Q ss_pred CCHHHHHHH
Q 043900 924 MNMTNVVRQ 932 (953)
Q Consensus 924 Pt~~evl~~ 932 (953)
||++|+++.
T Consensus 326 pta~ell~h 334 (389)
T 3gni_B 326 PSASTLLNH 334 (389)
T ss_dssp CCHHHHTTS
T ss_pred CCHHHHhcC
Confidence 999999863
No 136
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=2.6e-39 Score=352.71 Aligned_cols=269 Identities=20% Similarity=0.291 Sum_probs=202.2
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeec---cchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNL---LHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
..++|++.+.||+|+||.||+|.+..+++.||+|+++. ........+.+|+.++++++||||+++++++.. .
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~ 104 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----D 104 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----T
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----C
Confidence 34579999999999999999999988888999999974 234456788999999999999999999999653 3
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..++||||+++++|.+++..... ....+++..++.++.|++.||+|||+. +++||||||+||+++.++.+
T Consensus 105 ~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~ 175 (310)
T 2wqm_A 105 NELNIVLELADAGDLSRMIKHFKK------QKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVV 175 (310)
T ss_dssp TEEEEEEECCCSCBHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred CcEEEEEecCCCCCHHHHHHHhcc------cccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCE
Confidence 678999999999999999863221 134589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||++....... .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... ........
T Consensus 176 kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~ 250 (310)
T 2wqm_A 176 KLGDLGLGRFFSSKT--TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKI 250 (310)
T ss_dssp EECCC--------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHHH
T ss_pred EEEeccceeeecCCC--ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHHh
Confidence 999999998664322 1223346899999999999999999999999999999999999999753221 11111110
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcc
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~ 942 (953)
.... ..... ...++.++.+++.+||+.||++|||++||++.|++++....+
T Consensus 251 ~~~~--------~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~ 301 (310)
T 2wqm_A 251 EQCD--------YPPLP------------------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTAS 301 (310)
T ss_dssp HTTC--------SCCCC------------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred hccc--------CCCCc------------------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhh
Confidence 0000 00000 002345688999999999999999999999999999877554
No 137
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=4.5e-40 Score=355.03 Aligned_cols=255 Identities=22% Similarity=0.338 Sum_probs=201.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCC-------eEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGK-------TTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
.++|.+.+.||+|+||+||+|++..++ ..||+|+++.......+.+.+|++++++++||||+++++++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 82 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV---- 82 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC----
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE----
Confidence 357899999999999999999987655 479999998766667788999999999999999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
.++..++||||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 83 -~~~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~ 149 (289)
T 4fvq_A 83 -CGDENILVQEFVKFGSLDTYLKKN---------KNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIRE 149 (289)
T ss_dssp -CTTCCEEEEECCTTCBHHHHHHHT---------GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEEC
T ss_pred -eCCCCEEEEECCCCCCHHHHHHhC---------CCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecC
Confidence 346789999999999999999632 22489999999999999999999999 99999999999999988
Q ss_pred Cc--------EEEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCccc
Q 043900 783 MM--------AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFE 853 (953)
Q Consensus 783 ~~--------~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~ 853 (953)
+. +||+|||.+..... .....||+.|+|||++.+ ..++.++|||||||++|||++|..|+.....
T Consensus 150 ~~~~~~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~ 223 (289)
T 4fvq_A 150 EDRKTGNPPFIKLSDPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD 223 (289)
T ss_dssp CBGGGTBCCEEEECCCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred CcccccccceeeeccCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc
Confidence 86 99999999975421 123458899999999887 6799999999999999999996555432211
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
... ........ .. ... ..+.++.+++.+||+.||++|||++|+++.|
T Consensus 224 ~~~-~~~~~~~~--~~--------~~~----------------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l 270 (289)
T 4fvq_A 224 SQR-KLQFYEDR--HQ--------LPA----------------------PKAAELANLINNCMDYEPDHRPSFRAIIRDL 270 (289)
T ss_dssp HHH-HHHHHHTT--CC--------CCC----------------------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred hHH-HHHHhhcc--CC--------CCC----------------------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence 110 00000000 00 000 1123477999999999999999999999999
Q ss_pred HHHHHHh
Q 043900 934 QSIKNIL 940 (953)
Q Consensus 934 ~~i~~~~ 940 (953)
+++....
T Consensus 271 ~~l~~p~ 277 (289)
T 4fvq_A 271 NSLFTPD 277 (289)
T ss_dssp HTCC---
T ss_pred HHhcCCC
Confidence 9885543
No 138
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=3.9e-39 Score=348.96 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=211.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++..... .+.+.+|+.+++.++|++++..+.++. ......+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEE----EETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCcccccc----CCCCceE
Confidence 5689999999999999999999988889999999865432 346889999999999888777776653 2346789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCCcEE
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEMMAH 786 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~k 786 (953)
+||||+ +++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+|
T Consensus 82 lv~e~~-~~~L~~~~~~~---------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~k 148 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFC---------SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVY 148 (296)
T ss_dssp EEEECC-CCBHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEE
T ss_pred EEEEec-CCCHHHHHHhh---------ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEE
Confidence 999999 99999999532 23589999999999999999999999 99999999999999 4888999
Q ss_pred EeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCC--ccHH
Q 043900 787 VSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGD--MNLH 859 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~--~~~~ 859 (953)
|+|||.++........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....
T Consensus 149 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~ 228 (296)
T 3uzp_A 149 IIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYE 228 (296)
T ss_dssp ECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHH
T ss_pred EeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhh
Confidence 9999999877543321 11234569999999999999999999999999999999999999998643221 1111
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
........... ......+++++.+++.+||+.||++|||++|+++.|+++...
T Consensus 229 ~~~~~~~~~~~---------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 281 (296)
T 3uzp_A 229 RISEKKMSTPI---------------------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHHHHHSCH---------------------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcccccCCch---------------------------HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence 11111000000 000012356799999999999999999999999999999876
Q ss_pred hcc
Q 043900 940 LLG 942 (953)
Q Consensus 940 ~~~ 942 (953)
...
T Consensus 282 ~~~ 284 (296)
T 3uzp_A 282 QGF 284 (296)
T ss_dssp TTC
T ss_pred cCC
Confidence 543
No 139
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=5.3e-40 Score=368.48 Aligned_cols=257 Identities=19% Similarity=0.220 Sum_probs=203.3
Q ss_pred HHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 626 LYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 626 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
+....++|++.++||+|+||+||+|++..+++.||+|+++... ......+.+|+.+++.++||||++++++|.
T Consensus 64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~---- 139 (410)
T 3v8s_A 64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ---- 139 (410)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE----
T ss_pred cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE----
Confidence 3345678999999999999999999999999999999996421 222345788999999999999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
+....++||||+++|+|.++++. ..+++..+..++.||+.||+|||+. +|+||||||+|||++.+
T Consensus 140 -~~~~~~lV~E~~~gg~L~~~l~~-----------~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~ 204 (410)
T 3v8s_A 140 -DDRYLYMVMEYMPGGDLVNLMSN-----------YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKS 204 (410)
T ss_dssp -CSSEEEEEECCCTTEEHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred -ECCEEEEEEeCCCCCcHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCC
Confidence 45789999999999999999852 2488999999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCC----CCcccchHHHHHHHHHHHhCCCCCCCcccCCccH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE----VSINGDVYSYGILLLELVTRKKPVDSMFEGDMNL 858 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~ 858 (953)
+.+||+|||+|+...... ........||+.|+|||++.+.. ++.++|||||||++|||++|+.||......+ .+
T Consensus 205 g~ikL~DFG~a~~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~-~~ 282 (410)
T 3v8s_A 205 GHLKLADFGTCMKMNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG-TY 282 (410)
T ss_dssp SCEEECCCTTCEECCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HH
T ss_pred CCEEEeccceeEeeccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhh-HH
Confidence 999999999998764332 22233567999999999987665 7899999999999999999999997522110 11
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCC--CCCHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGD--RMNMTNVVR 931 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPt~~evl~ 931 (953)
...... . ... . .+.....+.++.+++.+||+.+|.+ ||+++||++
T Consensus 283 ~~i~~~----~-~~~---~--------------------~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 283 SKIMNH----K-NSL---T--------------------FPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp HHHHTH----H-HHC---C--------------------CCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred HHHHhc----c-ccc---c--------------------CCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 111100 0 000 0 0000023456889999999999998 999999886
No 140
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.6e-38 Score=351.86 Aligned_cols=279 Identities=22% Similarity=0.337 Sum_probs=213.8
Q ss_pred CcCHHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhh--cCCCCeeEEEeee
Q 043900 620 NISYQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKN--IRHRNLVKILTAC 697 (953)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~ 697 (953)
..+...-....++|++.+.||+|+||.||+|++. ++.||||+++.. ....+.+|++++.. ++||||+++++++
T Consensus 31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~ 105 (342)
T 1b6c_B 31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAAD 105 (342)
T ss_dssp SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEE
T ss_pred CCceeecccccccEEEEeeecCCCCcEEEEEEEc--CccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeee
Confidence 3344444556788999999999999999999984 568999999643 34567788888887 6899999999997
Q ss_pred cccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHh--------hCCCCCeEe
Q 043900 698 SGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLH--------HDCQPPITH 769 (953)
Q Consensus 698 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH 769 (953)
... .......++||||+++|+|.+++.. ..+++.+++.++.|++.||+||| +. +|+|
T Consensus 106 ~~~-~~~~~~~~lv~e~~~~g~L~~~l~~-----------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH 170 (342)
T 1b6c_B 106 NKD-NGTWTQLWLVSDYHEHGSLFDYLNR-----------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAH 170 (342)
T ss_dssp ECC-CSSCCCEEEEECCCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEEC
T ss_pred ccc-CCccceeEEEEeecCCCcHHHHHhc-----------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---Ceee
Confidence 543 1112378999999999999999952 25899999999999999999999 67 9999
Q ss_pred ecCCCCCeEecCCCcEEEeccccceecCCCCCcc--cccccccccccccccccCCC------CCCcccchHHHHHHHHHH
Q 043900 770 CDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQT--SSIDAKGSIGYIAPEYGLGS------EVSINGDVYSYGILLLEL 841 (953)
Q Consensus 770 ~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDv~slG~vl~el 841 (953)
|||||+||+++.++.+||+|||+++......... ......||+.|+|||++.+. .++.++|||||||++|||
T Consensus 171 ~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el 250 (342)
T 1b6c_B 171 RDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 250 (342)
T ss_dssp SCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHH
Confidence 9999999999999999999999998765433221 22345699999999998776 344789999999999999
Q ss_pred HhC----------CCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHH
Q 043900 842 VTR----------KKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRI 911 (953)
Q Consensus 842 ltg----------~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 911 (953)
+|| ..||......+.....+........ ...... .+ ....+++..+.++
T Consensus 251 ~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~------------~~-~~~~~~~~~l~~l 309 (342)
T 1b6c_B 251 ARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK--------LRPNIP------------NR-WQSCEALRVMAKI 309 (342)
T ss_dssp HTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC--------CCCCCC------------GG-GGTSHHHHHHHHH
T ss_pred HhccCcCCcccccccCccccCcCcccHHHHHHHHHHHH--------hCCCCc------------cc-ccchhHHHHHHHH
Confidence 999 6777654443333333322221111 000000 00 0112567789999
Q ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 912 GVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 912 ~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
+.+||+.||++|||++||++.|+++.+.
T Consensus 310 i~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 310 MRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp HHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999765
No 141
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=5e-40 Score=359.33 Aligned_cols=272 Identities=23% Similarity=0.370 Sum_probs=210.0
Q ss_pred CcccCcccccceeeEEEEEE----cCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 633 FASANEIGVGSFGSVYKGIL----DQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 633 ~~~~~~ig~G~~g~Vy~~~~----~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
|++.+.||+|+||+||+|.+ ..+++.||||+++... ....+.+.+|++++++++||||+++++++... ....
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA---GAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET---TTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC---CCce
Confidence 48999999999999988865 3466789999997543 34567789999999999999999999997532 2467
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++|+|.+++.. ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 110 ~~lv~e~~~~~~L~~~l~~-----------~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl 175 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPR-----------HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKI 175 (318)
T ss_dssp EEEEECCCTTCBHHHHGGG-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEE
T ss_pred EEEEEecccCCcHHHHHhh-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEE
Confidence 8999999999999999952 2489999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 788 SDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
+|||.++........ .......+|..|+|||++.+..++.++||||||+++|||++|+.||........ .. ...
T Consensus 176 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~---~~--~~~ 250 (318)
T 3lxp_A 176 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFL---EL--IGI 250 (318)
T ss_dssp CCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHH---HH--HCS
T ss_pred CCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhh---hh--hcc
Confidence 999999987543322 222344588899999999999999999999999999999999999875221100 00 000
Q ss_pred Cc------hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHh
Q 043900 867 PD------HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 867 ~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~ 940 (953)
.. ...+.++... .......++.++.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 312 (318)
T 3lxp_A 251 AQGQMTVLRLTELLERGE------------------RLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY 312 (318)
T ss_dssp CCHHHHHHHHHHHHHTTC------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhccc------------------CCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence 00 0111111000 00111234567999999999999999999999999999999887
Q ss_pred cccc
Q 043900 941 LGHR 944 (953)
Q Consensus 941 ~~~~ 944 (953)
.+..
T Consensus 313 ~~~~ 316 (318)
T 3lxp_A 313 QGQA 316 (318)
T ss_dssp HC--
T ss_pred ccCC
Confidence 6553
No 142
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.4e-39 Score=347.49 Aligned_cols=254 Identities=28% Similarity=0.409 Sum_probs=191.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc----hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH----HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|.+. ++.||||+++... ....+.+.+|+++++.++||||++++++|. .+
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 78 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----KE 78 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CC
T ss_pred hhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----cC
Confidence 357899999999999999999986 4689999986432 223567889999999999999999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC----
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE---- 781 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---- 781 (953)
+..++||||+++++|.+++. ...+++..++.++.|++.||+|||+....+|+||||||+||+++.
T Consensus 79 ~~~~lv~e~~~~~~L~~~~~-----------~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~ 147 (271)
T 3dtc_A 79 PNLCLVMEFARGGPLNRVLS-----------GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVEN 147 (271)
T ss_dssp --CEEEEECCTTEEHHHHHT-----------SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSS
T ss_pred CceEEEEEcCCCCCHHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEeccccc
Confidence 67899999999999999984 235899999999999999999999981112999999999999986
Q ss_pred ----CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 782 ----EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 782 ----~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
++.+||+|||.++...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||........
T Consensus 148 ~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~- 222 (271)
T 3dtc_A 148 GDLSNKILKITDFGLAREWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV- 222 (271)
T ss_dssp SCCSSCCEEECCCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH-
T ss_pred ccccCcceEEccCCccccccccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-
Confidence 6789999999998654322 2234689999999999999999999999999999999999999975322110
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSI 936 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i 936 (953)
.... ........ ....+++++.+++.+||+.||++|||++|+++.|+++
T Consensus 223 ----~~~~--------~~~~~~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 223 ----AYGV--------AMNKLALP------------------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ----HHHH--------HTSCCCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ----HHhh--------hcCCCCCC------------------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0000 00000000 0012345689999999999999999999999999864
No 143
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-39 Score=352.55 Aligned_cols=246 Identities=21% Similarity=0.252 Sum_probs=201.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|+...+++.||+|+++... ....+.+.+|..+++.++||||+++++++. +..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~-----~~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQ-----DAQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEE-----CSS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEE-----eCC
Confidence 357999999999999999999999888999999997432 234567889999999999999999999954 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~k 146 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRK----------SQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIK 146 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHH----------TSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEE
T ss_pred EEEEEEeCCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEE
Confidence 89999999999999999953 23588999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....
T Consensus 147 L~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-----~~~~~-- 214 (318)
T 1fot_A 147 ITDFGFAKYVPDV-----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM-----KTYEK-- 214 (318)
T ss_dssp ECCCSSCEECSSC-----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHH--
T ss_pred EeecCcceecCCc-----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH-----HHHHH--
Confidence 9999999876421 23456999999999999999999999999999999999999999752111 11110
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-----CHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-----NMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~evl~ 931 (953)
+...... . +...+.++.+++.+|++.||++|| +++|+++
T Consensus 215 ------i~~~~~~-~-------------------p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 215 ------ILNAELR-F-------------------PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp ------HHHCCCC-C-------------------CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred ------HHhCCCC-C-------------------CCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 0000000 0 001235688999999999999999 8888875
No 144
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.6e-39 Score=353.15 Aligned_cols=271 Identities=26% Similarity=0.399 Sum_probs=207.2
Q ss_pred cCCcccCcccccceeeEEEEE----EcCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGI----LDQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~----~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
+.|++.+.||+|+||.||+|+ ...+++.||+|+++.. .....+.+.+|++++++++||||+++++++.. ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DGG 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec---CCC
Confidence 458899999999999999999 4567789999999743 23345788999999999999999999999753 223
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~ 165 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPKN---------KNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQV 165 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHHH---------TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEE
T ss_pred ceEEEEEEeCCCCcHHHHHHhc---------cccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCE
Confidence 5689999999999999999532 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||.++........ .......||..|+|||++.+..++.++||||+|+++|||++|..|+..... .+...
T Consensus 166 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~ 239 (302)
T 4e5w_A 166 KIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA------LFLKM 239 (302)
T ss_dssp EECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHHHH
T ss_pred EECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh------HHhhc
Confidence 99999999887544322 223345588899999999999999999999999999999999998653211 11111
Q ss_pred hCCch----hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 865 ALPDH----VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 865 ~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
..+.. ......... ...+...+..+++++.+++.+||+.||++|||++|++++|+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 240 IGPTHGQMTVTRLVNTLK---------------EGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HCSCCGGGHHHHHHHHHH---------------TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHh---------------ccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 00000 000000000 00001111134567999999999999999999999999999875
No 145
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=2.1e-39 Score=349.29 Aligned_cols=273 Identities=23% Similarity=0.316 Sum_probs=196.6
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
++|++.+.||+|+||+||+|++. +++.||+|+++... ....+.+.+|++++++++||||+++++++. ..+..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 75 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRL 75 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCE
T ss_pred ccchhhhhcccCCCEEEEEEEcC-CCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeE
Confidence 57899999999999999999994 45689999996433 223467889999999999999999999964 34789
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++ +|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 76 ~lv~e~~~~-~l~~~~~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 142 (288)
T 1ob3_A 76 VLVFEHLDQ-DLKKLLDVC---------EGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIA 142 (288)
T ss_dssp EEEEECCSE-EHHHHHHTS---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEEC
T ss_pred EEEEEecCC-CHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEe
Confidence 999999975 999888532 23588999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||+++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||......+. ..........
T Consensus 143 Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~ 219 (288)
T 1ob3_A 143 DFGLARAFGIPV--RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ-LMRIFRILGT 219 (288)
T ss_dssp CTTHHHHHCC-----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCC
T ss_pred ECccccccCccc--cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHHCC
Confidence 999998664221 122334689999999998764 589999999999999999999999976432211 1111111110
Q ss_pred c---hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 D---HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. ....... ........ ..... ..........++++.+++.+||+.||++|||++|+++
T Consensus 220 ~~~~~~~~~~~--~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 220 PNSKNWPNVTE--LPKYDPNF--TVYEP--LPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CCTTTSTTGGG--STTCCTTC--CCCCC--CCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CChhhchhhhc--cccccccc--ccccC--ccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0 0000000 00000000 00000 0000001123567889999999999999999999875
No 146
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=6.3e-40 Score=376.14 Aligned_cols=259 Identities=25% Similarity=0.417 Sum_probs=208.1
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|.+.+.||+|+||.||+|.+..+ ..||||+++... ...+.+.+|+.++++++||||+++++++. .+..
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~-~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~------~~~~ 257 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKH-TKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT------KEPI 257 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTT-EEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSSC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCc-cEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe------CCcc
Confidence 356788999999999999999999765 589999997543 34678999999999999999999999863 2568
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++|+|.++++... ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+||+
T Consensus 258 ~lv~e~~~~g~L~~~l~~~~--------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~ 326 (454)
T 1qcf_A 258 YIITEFMAKGSLLDFLKSDE--------GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIA 326 (454)
T ss_dssp EEEECCCTTCBHHHHHHSHH--------HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEEC
T ss_pred EEEEeecCCCcHHHHHHhcc--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEe
Confidence 99999999999999996332 12578899999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||+++...... ........+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+....+ .........
T Consensus 327 DFG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~- 402 (454)
T 1qcf_A 327 DFGLARVIEDNE-YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE--VIRALERGY- 402 (454)
T ss_dssp STTGGGGBCCHH-HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--HHHHHHHTC-
T ss_pred eCCCceEcCCCc-eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC-
Confidence 999998764221 111223346789999999998999999999999999999999 999997532211 111111000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
+...+..+++++.+++.+||+.||++|||+++|++.|+++...
T Consensus 403 -----------------------------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 403 -----------------------------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp -----------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred -----------------------------CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 0000113456799999999999999999999999999987544
No 147
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2.4e-39 Score=356.58 Aligned_cols=249 Identities=22% Similarity=0.274 Sum_probs=198.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|+++.+++.||+|+++.. .....+.+.+|..+++++ +||||+++++++. ..
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~-----~~ 82 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQ-----TE 82 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEE-----eC
Confidence 35789999999999999999999999999999999743 334456788999999988 8999999999954 44
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 83 ~~~~lv~e~~~gg~L~~~l~~----------~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~ 149 (345)
T 3a8x_A 83 SRLFFVIEYVNGGDLMFHMQR----------QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHI 149 (345)
T ss_dssp SEEEEEECCCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCE
T ss_pred CEEEEEEeCCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCE
Confidence 789999999999999999852 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc----cHHHH
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM----NLHNF 861 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~----~~~~~ 861 (953)
||+|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+. .....
T Consensus 150 kL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~ 227 (345)
T 3a8x_A 150 KLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL 227 (345)
T ss_dssp EECCGGGCBCSCCTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHH
T ss_pred EEEeccccccccCCC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHH
Confidence 999999998643221 223345799999999999999999999999999999999999999975321110 00000
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
.. .+..... ..+...+.++.+++.+||+.||++||++
T Consensus 228 ~~--------~i~~~~~--------------------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 228 FQ--------VILEKQI--------------------RIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp HH--------HHHHCCC--------------------CCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred HH--------HHHcCCC--------------------CCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 00 0000000 0001234568899999999999999996
No 148
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=5.7e-39 Score=361.28 Aligned_cols=256 Identities=19% Similarity=0.249 Sum_probs=194.3
Q ss_pred hcCCccc-CcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhh-cCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASA-NEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKN-IRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|.+. +.||+|+||+||+|.+..+++.||||+++.. ..+.+|++++.+ .+||||+++++++... +.+...
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~ 133 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 133 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcE
Confidence 4567766 6899999999999999999999999999632 456778888754 4899999999987542 334567
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC---CCc
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE---EMM 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~ 784 (953)
.++||||+++|+|.+++.... ...+++.++..|+.||+.||+|||+. +|+||||||+|||++. ++.
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~ 202 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDRG--------DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAI 202 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC-----------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCC
T ss_pred EEEEEEeCCCCcHHHHHHHhC--------CCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCcc
Confidence 899999999999999996432 23589999999999999999999999 9999999999999987 789
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc--cHHHHH
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM--NLHNFA 862 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~--~~~~~~ 862 (953)
+||+|||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ......
T Consensus 203 ~kl~DFG~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i 279 (400)
T 1nxk_A 203 LKLTDFGFAKETTSH---NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI 279 (400)
T ss_dssp EEECCCTTCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHH
T ss_pred EEEEecccccccCCC---CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHH
Confidence 999999999876422 222345689999999999999999999999999999999999999975432211 111111
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
...... . .. .....++.++.+++.+||+.||++|||++|+++.
T Consensus 280 ~~~~~~---------~-~~-----------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 280 RMGQYE---------F-PN-----------------PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp HHTCCC---------C-CT-----------------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HcCccc---------C-CC-----------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 100000 0 00 0001235678999999999999999999999873
No 149
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2.3e-39 Score=345.88 Aligned_cols=255 Identities=22% Similarity=0.323 Sum_probs=202.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++. ++.||||+++.. .....+.+.+|+.++++++||||++++++|... ....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 83 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PAPH 83 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TSSS
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CCCC
Confidence 357999999999999999999986 468999999743 344557899999999999999999999997432 2367
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC--eEeecCCCCCeEecCCCcE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP--ITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~ 785 (953)
.++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||+. + ++||||||+||+++.++.+
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~ 152 (271)
T 3kmu_A 84 PTLITHWMPYGSLYNVLHEGT--------NFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTA 152 (271)
T ss_dssp CEEEEECCTTCBHHHHHHSCS--------SCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCE
T ss_pred eEeeecccCCCcHHHHHhhcc--------cCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcce
Confidence 899999999999999996422 12589999999999999999999998 7 9999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCc---ccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSI---NGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
+|+|||++..... ....||+.|+|||++.+..++. ++|||||||++|||++|+.||......+. .....
T Consensus 153 ~l~~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~ 224 (271)
T 3kmu_A 153 RISMADVKFSFQS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI-GMKVA 224 (271)
T ss_dssp EEEGGGSCCTTSC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH-HHHHH
T ss_pred eEEeccceeeecc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH-HHHHH
Confidence 9999998764321 2345899999999988765554 79999999999999999999975322111 00000
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~ 938 (953)
..... ... +..+++++.+++.+||+.||++|||++|+++.|+++.+
T Consensus 225 ~~~~~--------~~~----------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 225 LEGLR--------PTI----------------------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HSCCC--------CCC----------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred hcCCC--------CCC----------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 00000 000 01234568999999999999999999999999998753
No 150
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.3e-39 Score=359.85 Aligned_cols=211 Identities=28% Similarity=0.331 Sum_probs=181.2
Q ss_pred CCCcCHHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-----CCCeeE
Q 043900 618 FPNISYQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-----HRNLVK 692 (953)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~ 692 (953)
...+++.+.+...++|++.++||+|+||+||+|++..+++.||||+++.. ....+.+..|+++++++. ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 44556666666778999999999999999999999988899999999743 334566788999999986 999999
Q ss_pred EEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecC
Q 043900 693 ILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDL 772 (953)
Q Consensus 693 ~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 772 (953)
+++++.. .+..++||||+ +++|.+++..... ..+++.+++.++.||+.||+|||+. +|+||||
T Consensus 101 ~~~~~~~-----~~~~~lv~e~~-~~~L~~~~~~~~~--------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDl 163 (360)
T 3llt_A 101 YHGKFMY-----YDHMCLIFEPL-GPSLYEIITRNNY--------NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDL 163 (360)
T ss_dssp EEEEEEE-----TTEEEEEECCC-CCBHHHHHHHTTT--------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred ccceeeE-----CCeeEEEEcCC-CCCHHHHHHhcCC--------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCC
Confidence 9999643 36899999999 9999999964322 2589999999999999999999999 9999999
Q ss_pred CCCCeEecC-------------------------CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCc
Q 043900 773 KPSNVLLDE-------------------------EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSI 827 (953)
Q Consensus 773 kp~NIll~~-------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 827 (953)
||+|||++. ++.+||+|||+|+..... .....||+.|+|||++.+..++.
T Consensus 164 kp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~ 238 (360)
T 3llt_A 164 KPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDV 238 (360)
T ss_dssp SGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCT
T ss_pred CcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCC
Confidence 999999975 789999999999875422 22346899999999999999999
Q ss_pred ccchHHHHHHHHHHHhCCCCCCCc
Q 043900 828 NGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 828 ~sDv~slG~vl~elltg~~pf~~~ 851 (953)
++|||||||++|||++|+.||...
T Consensus 239 ~~DiwslG~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 239 SSDMWSFGCVLAELYTGSLLFRTH 262 (360)
T ss_dssp THHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccchHHHHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999753
No 151
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2e-39 Score=361.73 Aligned_cols=287 Identities=18% Similarity=0.220 Sum_probs=208.9
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
...++|++.+.||+|+||.||+|.+..+++.||+|++... .....+.+.+|++++++++||||+++++++.........
T Consensus 24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 3456899999999999999999999999999999999743 334457889999999999999999999998665455556
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||++ |+|.+++. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 104 ~~~iv~e~~~-~~L~~~l~-----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~k 168 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLK-----------TQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLK 168 (364)
T ss_dssp CEEEEEECCS-EEHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEE
T ss_pred eEEEEEcccC-cCHHHHHH-----------hCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEE
Confidence 7899999996 59999884 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCc-ccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 787 VSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
|+|||.++........ .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ ........
T Consensus 169 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~ 247 (364)
T 3qyz_A 169 ICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGI 247 (364)
T ss_dssp ECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHH
T ss_pred EEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHH
Confidence 9999999876433221 11234569999999998654 458999999999999999999999997643222 11111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.... ..+................................+.++.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 248 LGSP-SQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HCSC-CHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hCCC-CHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1111 00000000000000000000000000000001123567899999999999999999999986
No 152
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=4.1e-39 Score=345.05 Aligned_cols=252 Identities=21% Similarity=0.257 Sum_probs=204.5
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|++..++..||+|++........+.+.+|++++++++||||++++++|. .....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 81 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTDI 81 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCeE
Confidence 3567999999999999999999999999899999998665566788999999999999999999999964 34778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCCcE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEMMA 785 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~ 785 (953)
++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+
T Consensus 82 ~lv~e~~~~~~L~~~~~~----------~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~ 148 (277)
T 3f3z_A 82 YLVMELCTGGELFERVVH----------KRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPL 148 (277)
T ss_dssp EEEEECCCSCBHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCE
T ss_pred EEEEeccCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcE
Confidence 999999999999998852 23589999999999999999999999 99999999999999 788899
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||.+....... ......||+.|+|||++.+. ++.++||||+|+++|||++|+.||......+ .........
T Consensus 149 ~l~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~ 223 (277)
T 3f3z_A 149 KLIDFGLAARFKPGK---MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSE-VMLKIREGT 223 (277)
T ss_dssp EECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCC
T ss_pred EEEecccceeccCcc---chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCC
Confidence 999999998765332 22334699999999998664 8999999999999999999999997532211 011110000
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... .. .....+++++.+++.+||+.||++|||+.|+++
T Consensus 224 ~~~-------------~~---------------~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 224 FTF-------------PE---------------KDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp CCC-------------CH---------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCC-------------Cc---------------hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 00 000123567899999999999999999999986
No 153
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.3e-39 Score=355.01 Aligned_cols=264 Identities=23% Similarity=0.404 Sum_probs=202.2
Q ss_pred cCCcccCcccccceeeEEEEEEcCCC----eEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGK----TTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~----~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
++|++.+.||+|+||.||+|.+..++ ..||+|+++.. .......+.+|+.++++++||||+++++++. ..
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 118 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS-----KY 118 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SS
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEe-----cC
Confidence 46778899999999999999986542 45999999743 3344567899999999999999999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++|+|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 119 ~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~ 186 (333)
T 1mqb_A 119 KPMMIITEYMENGALDKFLREK---------DGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVC 186 (333)
T ss_dssp SSEEEEEECCTTEEHHHHHHHT---------TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCE
T ss_pred CCcEEEEeCCCCCcHHHHHHhC---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcE
Confidence 7889999999999999999532 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 786 HVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
||+|||.++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+ ......
T Consensus 187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~~~~~ 264 (333)
T 1mqb_A 187 KVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--VMKAIN 264 (333)
T ss_dssp EECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHH
T ss_pred EECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHH
Confidence 99999999876433221 12223346789999999999999999999999999999999 999996532111 111000
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhccc
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGH 943 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~ 943 (953)
... ... ....++.++.+++.+||+.||++||++.|+++.|+++.+.....
T Consensus 265 ~~~-----------~~~-------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~ 314 (333)
T 1mqb_A 265 DGF-----------RLP-------------------TPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSL 314 (333)
T ss_dssp TTC-----------CCC-------------------CCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGG
T ss_pred CCC-----------cCC-------------------CcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhh
Confidence 000 000 00123456889999999999999999999999999988765544
No 154
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.7e-40 Score=361.58 Aligned_cols=273 Identities=20% Similarity=0.361 Sum_probs=212.2
Q ss_pred HHHHhhcCCcccCcccccceeeEEEEEEc-----CCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeec
Q 043900 625 NLYNATDGFASANEIGVGSFGSVYKGILD-----QGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACS 698 (953)
Q Consensus 625 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~ 698 (953)
+.....++|++.+.||+|+||.||+|++. .+++.||+|+++... ......+.+|+.++++++||||+++++++.
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 98 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 98 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence 34445678999999999999999999986 345689999997432 334567899999999999999999999964
Q ss_pred ccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeE
Q 043900 699 GVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVL 778 (953)
Q Consensus 699 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 778 (953)
.....++||||+++|+|.+++...............+++..++.++.|++.||+|||+. +|+||||||+||+
T Consensus 99 -----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIl 170 (322)
T 1p4o_A 99 -----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCM 170 (322)
T ss_dssp -----SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEE
T ss_pred -----cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEE
Confidence 34678999999999999999964321111111123578999999999999999999999 9999999999999
Q ss_pred ecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCcc
Q 043900 779 LDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMN 857 (953)
Q Consensus 779 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~ 857 (953)
++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||+|+++|||++ |..||......
T Consensus 171 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--- 247 (322)
T 1p4o_A 171 VAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE--- 247 (322)
T ss_dssp ECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH---
T ss_pred EcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHH---
Confidence 99999999999999986643333333334457889999999999999999999999999999999 89998753211
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
....... ....... ...++.++.+++.+||+.||++|||+.|+++.|+++.
T Consensus 248 --~~~~~~~--------~~~~~~~-------------------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 248 --QVLRFVM--------EGGLLDK-------------------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp --HHHHHHH--------TTCCCCC-------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred --HHHHHHH--------cCCcCCC-------------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 1111100 0000000 0123456889999999999999999999999998763
No 155
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=352.59 Aligned_cols=275 Identities=21% Similarity=0.267 Sum_probs=199.2
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
++|++.+.||+|+||+||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++.. .+..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRR-----KRRL 77 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeec-----CCeE
Confidence 57999999999999999999999988899999985432 2335678899999999999999999999643 4778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++.. ...+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 78 ~lv~e~~~~~~l~~~~~~----------~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~ 144 (311)
T 4agu_A 78 HLVFEYCDHTVLHELDRY----------QRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLC 144 (311)
T ss_dssp EEEEECCSEEHHHHHHHT----------SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred EEEEEeCCCchHHHHHhh----------hcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEe
Confidence 999999999999998742 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC-
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL- 866 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~- 866 (953)
|||.++...... .......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||......+. ........
T Consensus 145 Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~~ 220 (311)
T 4agu_A 145 DFGFARLLTGPS--DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ--LYLIRKTLG 220 (311)
T ss_dssp CCTTCEECC--------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHHHC
T ss_pred eCCCchhccCcc--cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhc
Confidence 999998764322 12234468999999999876 5789999999999999999999999976432211 11111111
Q ss_pred --Cchhhhhccc-cccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 --PDHVVDIVDS-TLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 --~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.......... ....... ......... ........+.++.+++.+||+.||++|||++|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 221 DLIPRHQQVFSTNQYFSGVK-IPDPEDMEP---LELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp SCCHHHHHHHHTCGGGTTCC-CCCCSSCCC---HHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccccccccccccccccccCc-CCCccccch---hhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0000000000 0000000 000000000 00001134567899999999999999999999985
No 156
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=353.75 Aligned_cols=276 Identities=23% Similarity=0.364 Sum_probs=213.3
Q ss_pred hcCCcccCcccccceeeEEEEEE----cCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGIL----DQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|++ ..+++.||+|+++.......+.+.+|++++++++||||+++++++... ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec---CC
Confidence 35689999999999999999994 556789999999876666778899999999999999999999987432 23
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~---------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~ 184 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHK---------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 184 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHST---------TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHhcc---------cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcE
Confidence 46899999999999999996322 3589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcc-cccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQT-SSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++......... ......++..|+|||++.+..++.++||||||+++|||+||..||...... .......
T Consensus 185 kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~---~~~~~~~ 261 (326)
T 2w1i_A 185 KIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGN 261 (326)
T ss_dssp EECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHH---HHHHHCT
T ss_pred EEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHH---HHHhhcc
Confidence 999999998875433221 122345778899999999888999999999999999999999997642110 0000000
Q ss_pred hCCc-----hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 865 ALPD-----HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 865 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.... ...+.+.... +......+++++.+++.+||+.||++|||+.|+++.|+++++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 262 DKQGQMIVFHLIELLKNNG------------------RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp TCCTHHHHHHHHHHHHTTC------------------CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHhhcCC------------------CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 0000 0000000000 0001123456799999999999999999999999999999887
Q ss_pred hc
Q 043900 940 LL 941 (953)
Q Consensus 940 ~~ 941 (953)
+.
T Consensus 324 l~ 325 (326)
T 2w1i_A 324 MA 325 (326)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 157
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2.9e-39 Score=356.42 Aligned_cols=246 Identities=18% Similarity=0.214 Sum_probs=201.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.+++.++||||+++++++. +..
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~ 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFK-----DNS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----cCC
Confidence 357999999999999999999999888999999996432 234567889999999999999999999854 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~k 181 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRR----------IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQ 181 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred EEEEEEcCCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEE
Confidence 89999999999999999952 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+ ........
T Consensus 182 L~DFg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~-- 253 (350)
T 1rdq_E 182 VTDFGFAKRVKGR-----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ-IYEKIVSG-- 253 (350)
T ss_dssp ECCCTTCEECSSC-----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHC--
T ss_pred EcccccceeccCC-----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH-HHHHHHcC--
Confidence 9999999876432 234569999999999999999999999999999999999999997531110 01111000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCC-----HHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMN-----MTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~evl~ 931 (953)
... .+...+.++.+++.+||+.||++||+ ++|+++
T Consensus 254 ----------~~~--------------------~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 254 ----------KVR--------------------FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp ----------CCC--------------------CCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred ----------CCC--------------------CCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 000 00023456889999999999999998 777765
No 158
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.4e-39 Score=357.67 Aligned_cols=270 Identities=20% Similarity=0.259 Sum_probs=204.2
Q ss_pred HHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc-----chhhHHHHHHHHHHHhhcCCCCeeEEEeeecc
Q 043900 625 NLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL-----HHGAFKSFIAECNTLKNIRHRNLVKILTACSG 699 (953)
Q Consensus 625 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~ 699 (953)
++....++|++.+.||+|+||.||+|.+..+++.||+|+++.. .....+.+.+|++++++++||||++++++|.
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~- 98 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE- 98 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE-
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc-
Confidence 3456678899999999999999999999999999999999643 2345678999999999999999999999964
Q ss_pred cccCCCCceeEEEeeccCCchhhccccCCcCCc------------------------------ccCCccccCHHHHHHHH
Q 043900 700 VDYQGNDFKALVFEFMQNRSLEEWLHPITREDK------------------------------TEEAPRSLNLLQRLNIG 749 (953)
Q Consensus 700 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~------------------------------~~~~~~~l~~~~~~~i~ 749 (953)
+.+..++||||+++|+|.+++........ .......+++..++.++
T Consensus 99 ----~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (345)
T 3hko_A 99 ----DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIM 174 (345)
T ss_dssp ----CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHH
T ss_pred ----cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHH
Confidence 34789999999999999999853211100 00112245778899999
Q ss_pred HHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC--cEEEeccccceecCCCCC--cccccccccccccccccccCC--C
Q 043900 750 IDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM--MAHVSDFGLARFLPLSPA--QTSSIDAKGSIGYIAPEYGLG--S 823 (953)
Q Consensus 750 ~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~ 823 (953)
.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++.+..... ........||+.|+|||++.+ .
T Consensus 175 ~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 251 (345)
T 3hko_A 175 RQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNE 251 (345)
T ss_dssp HHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSS
T ss_pred HHHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCC
Confidence 9999999999999 999999999999998776 899999999987643221 112334569999999999875 6
Q ss_pred CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHH
Q 043900 824 EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIE 903 (953)
Q Consensus 824 ~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (953)
.++.++|||||||++|||++|+.||......+. ...... ....... .....
T Consensus 252 ~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~~~~------------~~~~~~~----------------~~~~~ 302 (345)
T 3hko_A 252 SYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADT-ISQVLN------------KKLCFEN----------------PNYNV 302 (345)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHH------------CCCCTTS----------------GGGGG
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHH-HHHHHh------------cccccCC----------------ccccc
Confidence 789999999999999999999999975322111 111110 0000000 00012
Q ss_pred HHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 904 CLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 904 ~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.++++.+++.+||+.||++|||+.|+++
T Consensus 303 ~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 303 LSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp SCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 3457889999999999999999999987
No 159
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.8e-39 Score=347.08 Aligned_cols=260 Identities=21% Similarity=0.314 Sum_probs=205.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCC---CeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQG---KTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|.+.+.||+|+||.||+|++... +..||+|+++.. .....+.+.+|+.++++++||||+++++++..
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------ 84 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE------ 84 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS------
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC------
Confidence 46799999999999999999997543 346999999754 34456789999999999999999999998632
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..++||||+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 85 ~~~~~v~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~ 152 (281)
T 3cc6_A 85 EPTWIIMELYPYGELGHYLERN---------KNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECV 152 (281)
T ss_dssp SSCEEEEECCTTCBHHHHHHHH---------TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEE
T ss_pred CCCEEEEecCCCCCHHHHHHhc---------cccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcE
Confidence 4568999999999999999532 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||.+........ .......+++.|+|||++.+..++.++||||||+++|||++ |+.||......+ .......
T Consensus 153 kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~--~~~~~~~ 229 (281)
T 3cc6_A 153 KLGDFGLSRYIEDEDY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD--VIGVLEK 229 (281)
T ss_dssp EECCCCGGGCC----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG--HHHHHHH
T ss_pred EeCccCCCcccccccc-cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH--HHHHHhc
Confidence 9999999987643221 12233457889999999988899999999999999999998 999997532221 1111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHh
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~ 940 (953)
.... . ....+++.+.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 230 ~~~~-----------~-------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 275 (281)
T 3cc6_A 230 GDRL-----------P-------------------KPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQME 275 (281)
T ss_dssp TCCC-----------C-------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CCCC-----------C-------------------CCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhh
Confidence 0000 0 00023456889999999999999999999999999987654
No 160
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.6e-39 Score=356.61 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=200.7
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 704 (953)
..++|++.+.||+|+||.||+|++..+++.||+|+++.. .....+.+..|..++..+ +||+|+++++++. .
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~-----~ 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQ-----T 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEE-----C
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEE-----c
Confidence 346899999999999999999999998899999999743 223456788999999988 8999999999853 4
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++|+|.+++.. ...+++..++.++.||+.||+|||+. ||+||||||+|||++.++.
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ 159 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQ----------VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGH 159 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSC
T ss_pred CCEEEEEEeCCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCc
Confidence 4789999999999999999952 23589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||+++..... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....
T Consensus 160 vkL~DFG~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-----~~~~~ 232 (353)
T 2i0e_A 160 IKIADFGMCKENIWD--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-----ELFQS 232 (353)
T ss_dssp EEECCCTTCBCCCCT--TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHH
T ss_pred EEEEeCCcccccccC--CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH-----HHHHH
Confidence 999999999854322 12233456999999999999999999999999999999999999999753211 11110
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCC-----HHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMN-----MTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~evl~ 931 (953)
+...... .+...+.++.+++.+||+.||++||+ ++|+++
T Consensus 233 --------i~~~~~~--------------------~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 233 --------IMEHNVA--------------------YPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp --------HHHCCCC--------------------CCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred --------HHhCCCC--------------------CCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 0000000 00023456889999999999999996 466654
No 161
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=6.8e-39 Score=345.79 Aligned_cols=251 Identities=22% Similarity=0.316 Sum_probs=200.0
Q ss_pred CCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 632 GFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 632 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.|++.+.||+|+||.||+|.+..++..||+|++... .....+.+.+|+.++++++||||+++++++... .......+
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 105 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIV 105 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceEE
Confidence 477888999999999999999999999999999743 344567889999999999999999999987543 33456789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC--eEeecCCCCCeEec-CCCcEE
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP--ITHCDLKPSNVLLD-EEMMAH 786 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~-~~~~~k 786 (953)
+||||+++|+|.+++.. ...+++..++.++.|++.||+|||+. + |+||||||+||+++ .++.+|
T Consensus 106 lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~k 172 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKR----------FKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVK 172 (290)
T ss_dssp EEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEE
T ss_pred EEEEecCCCCHHHHHHH----------ccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEE
Confidence 99999999999999952 23588999999999999999999998 7 99999999999998 789999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||++...... ......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||....... .......
T Consensus 173 l~Dfg~~~~~~~~----~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~----~~~~~~~ 243 (290)
T 1t4h_A 173 IGDLGLATLKRAS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA----QIYRRVT 243 (290)
T ss_dssp ECCTTGGGGCCTT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH----HHHHHHT
T ss_pred EeeCCCccccccc----ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH----HHHHHHh
Confidence 9999999754322 2233468999999998764 58999999999999999999999997532211 1111110
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
....... .....++++.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~--------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 244 SGVKPAS--------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp TTCCCGG--------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccCCccc--------------------------cCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 0000000 00012346889999999999999999999985
No 162
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=351.28 Aligned_cols=245 Identities=22% Similarity=0.239 Sum_probs=191.9
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCc
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 707 (953)
++|++.++||+|+||+||+|++..+++.||||++... ..........|+..+.++ +||||++++++|. .++.
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~-----~~~~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWE-----EGGI 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE-----eCCE
Confidence 5799999999999999999999988889999998642 233344556666666655 8999999999964 3478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+ +++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+|||++.++.+||
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl 198 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEAW---------GASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKL 198 (311)
T ss_dssp EEEEEECC-CCBHHHHHHHH---------CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEE
T ss_pred EEEEEecc-CCCHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEE
Confidence 99999999 67998888532 23589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
+|||+++...... ......||+.|+|||++.+ .++.++|||||||++|||++|..|+.... ..........+
T Consensus 199 ~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----~~~~~~~~~~~ 270 (311)
T 3p1a_A 199 GDFGLLVELGTAG---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----GWQQLRQGYLP 270 (311)
T ss_dssp CCCTTCEECC---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----HHHHHTTTCCC
T ss_pred ccceeeeecccCC---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----HHHHHhccCCC
Confidence 9999998764322 2234459999999999876 79999999999999999999977664310 01110000000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. .....+++++.+++.+||+.||++|||++|+++
T Consensus 271 ~------------------------------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 271 P------------------------------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp H------------------------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred c------------------------------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 0 001123567899999999999999999999985
No 163
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1e-38 Score=349.62 Aligned_cols=252 Identities=19% Similarity=0.243 Sum_probs=203.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchh------hHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHG------AFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++..... ..+.+.+|+.++++++||||+++++++.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 85 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE----- 85 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe-----
Confidence 45799999999999999999999988889999999743221 3577899999999999999999999964
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
.....++||||+++++|.+++.. ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 86 ~~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~ 152 (321)
T 2a2a_A 86 NRTDVVLILELVSGGELFDFLAQ----------KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKN 152 (321)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHT----------CSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTT
T ss_pred cCCEEEEEEEcCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCC
Confidence 34789999999999999999952 23589999999999999999999999 999999999999999888
Q ss_pred ----cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHH
Q 043900 784 ----MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLH 859 (953)
Q Consensus 784 ----~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~ 859 (953)
.+||+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+
T Consensus 153 ~~~~~~kl~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---- 225 (321)
T 2a2a_A 153 IPIPHIKLIDFGLAHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---- 225 (321)
T ss_dssp SSSCCEEECCCTTCEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH----
T ss_pred CCcCCEEEccCccceecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH----
Confidence 79999999998765332 2234469999999999999999999999999999999999999997532111
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..... ..... .... ......+..+.+++.+||+.||++|||++|+++
T Consensus 226 -~~~~i--------~~~~~-~~~~---------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 226 -TLANI--------TSVSY-DFDE---------------EFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp -HHHHH--------HTTCC-CCCH---------------HHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred -HHHHH--------Hhccc-ccCh---------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11000 00000 0000 001123456889999999999999999999986
No 164
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=3.4e-39 Score=358.35 Aligned_cols=255 Identities=22% Similarity=0.260 Sum_probs=193.7
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||+||+|++..+++.||+|+++.... ..+.+.+|+.++++++||||+++++++. .....
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~ 91 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVIL-----TPTHL 91 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCEE
Confidence 35689999999999999999999998899999999975332 3467889999999999999999999964 34789
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc--EE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM--AH 786 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~k 786 (953)
++||||+++|+|.+++.. ...+++..++.++.|++.||+|||+. ||+||||||+||+++.++. +|
T Consensus 92 ~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~k 158 (361)
T 3uc3_A 92 AIIMEYASGGELYERICN----------AGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLK 158 (361)
T ss_dssp EEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEE
T ss_pred EEEEEeCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEE
Confidence 999999999999999852 23589999999999999999999999 9999999999999987765 99
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcc-cchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSIN-GDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||+++..... .......||+.|+|||++.+..++.+ +||||+||++|||++|+.||....... .........
T Consensus 159 l~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~ 234 (361)
T 3uc3_A 159 ICDFGYSKSSVLH---SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRI 234 (361)
T ss_dssp ECCCCCC------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHH
T ss_pred EeecCcccccccc---CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHH
Confidence 9999999754222 22234569999999999988887655 899999999999999999997643322 122211111
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
.... .. .......++++.+++.+||+.||++|||++|+++.
T Consensus 235 ~~~~--------~~------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 235 LSVK--------YS------------------IPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HTTC--------CC------------------CCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred hcCC--------CC------------------CCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 1000 00 00000124568899999999999999999999864
No 165
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=5.9e-39 Score=344.26 Aligned_cols=262 Identities=26% Similarity=0.416 Sum_probs=208.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|.+.++ +.||+|+++.... ..+.+.+|++++++++||||+++++++. .+..+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~-~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~~ 83 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGH-TKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT------QEPIY 83 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT-EEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC------SSSCE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCC-cEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc------CCCcE
Confidence 46789999999999999999998754 5899999975432 3577899999999999999999999863 24589
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++++|.+++.... ...+++.+++.++.|++.||+|||+. +|+||||||+||++++++.+||+|
T Consensus 84 ~v~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D 152 (279)
T 1qpc_A 84 IITEYMENGSLVDFLKTPS--------GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIAD 152 (279)
T ss_dssp EEEECCTTCBHHHHTTSHH--------HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECC
T ss_pred EEEecCCCCCHHHHHhcCC--------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECC
Confidence 9999999999999996321 12589999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||.++...... ........++..|+|||++.+..++.++||||||+++|||++ |+.||......+ .........
T Consensus 153 fg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~~~-- 227 (279)
T 1qpc_A 153 FGLARLIEDNE-YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE--VIQNLERGY-- 227 (279)
T ss_dssp CTTCEECSSSC-EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTC--
T ss_pred CcccccccCcc-cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH--HHHHHhccc--
Confidence 99998765332 122233457889999999988889999999999999999999 999987532111 111110000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhccc
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGH 943 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~ 943 (953)
... ....++.++.+++.+||+.||++|||++++++.|+++.....+.
T Consensus 228 ------~~~----------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~ 274 (279)
T 1qpc_A 228 ------RMV----------------------RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQ 274 (279)
T ss_dssp ------CCC----------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC---
T ss_pred ------CCC----------------------CcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCC
Confidence 000 00123457899999999999999999999999999998775544
No 166
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.7e-39 Score=358.05 Aligned_cols=280 Identities=21% Similarity=0.247 Sum_probs=198.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeec--cchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc-cCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNL--LHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD-YQGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~ 705 (953)
..++|++.+.||+|+||.||+|.+..+++.||||++.. ......+.+.+|++++++++||||+++++++.... ....
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 35689999999999999999999998889999999853 23344577899999999999999999999975431 1223
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+ +++|.+++.. ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~-----------~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~ 167 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH-----------EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCEL 167 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred ceEEEEEecC-CCCHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCE
Confidence 4579999999 8899999852 3588999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++..... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+......
T Consensus 168 kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~ 241 (367)
T 1cm8_A 168 KILDFGLARQADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKV 241 (367)
T ss_dssp EECCCTTCEECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHH
T ss_pred EEEeeecccccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHh
Confidence 99999999875422 234568999999999877 679999999999999999999999997532211 11111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccch-hhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQR-QRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. .....+.... +.............. ............++++.+++.+||+.||++|||++|+++
T Consensus 242 ~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 242 T-GTPPAEFVQR-LQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp H-CCCCHHHHHT-CSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred c-CCCCHHHHHH-hhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 1 0000000000 000000000000000 000000001133567899999999999999999999987
No 167
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1e-38 Score=343.50 Aligned_cols=252 Identities=20% Similarity=0.259 Sum_probs=202.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|.+..+++.||+|++... .....+.+.+|+.++++++||||+++++++. ....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE-----cCCE
Confidence 46899999999999999999999998899999999643 3345577889999999999999999999964 3477
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc---
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM--- 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--- 784 (953)
.++||||+++++|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 80 ~~~v~e~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~ 146 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVA----------REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAA 146 (284)
T ss_dssp EEEEECCCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCC
T ss_pred EEEEEecCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCc
Confidence 8999999999999988852 23589999999999999999999999 9999999999999986655
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ........
T Consensus 147 ~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~ 222 (284)
T 3kk8_A 147 VKLADFGLAIEVNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR-LYAQIKAG 222 (284)
T ss_dssp EEECCCTTCEECCSSC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHT
T ss_pred EEEeeceeeEEcccCc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH-HHHHHHhc
Confidence 9999999998764322 2233569999999999999999999999999999999999999997532111 01111000
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...... .....+++++.+++.+||+.||++|||++|+++
T Consensus 223 ~~~~~~----------------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 223 AYDYPS----------------------------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp CCCCCT----------------------------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred cccCCc----------------------------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 000000 000123456889999999999999999999987
No 168
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=6.5e-39 Score=366.13 Aligned_cols=248 Identities=24% Similarity=0.334 Sum_probs=202.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|.+.+.||+|+||.||+|++..+++.||||+++... ......+.+|+.+++.++||||+++++++. ...
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~~~ 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----TPS 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECC
Confidence 357999999999999999999999888899999996432 233567899999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~----------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vk 156 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICK----------NGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAK 156 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTS----------SSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEE
T ss_pred EEEEEEeCCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeE
Confidence 89999999999999999952 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||+++...... ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.... .....
T Consensus 157 L~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~-----~~~~~- 227 (476)
T 2y94_A 157 IADFGLSNMMSDGE---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP-----TLFKK- 227 (476)
T ss_dssp ECCCSSCEECCTTC---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH-----HHHHH-
T ss_pred EEeccchhhccccc---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH-----HHHHH-
Confidence 99999998764332 2234569999999999988765 68999999999999999999999753211 11110
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+.+... .. +...++++.+++.+||+.||++|||++|+++
T Consensus 228 -------i~~~~~-~~-------------------p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 228 -------ICDGIF-YT-------------------PQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp -------HHTTCC-CC-------------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -------HhcCCc-CC-------------------CccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 000000 00 0012356889999999999999999999987
No 169
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=354.65 Aligned_cols=244 Identities=22% Similarity=0.328 Sum_probs=201.1
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch--------hhHHHHHHHHHHHhhcCCCCeeEEEeeeccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH--------GAFKSFIAECNTLKNIRHRNLVKILTACSGV 700 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 700 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++.... .....+.+|+.++++++||||+++++++.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~-- 99 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE-- 99 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE--
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence 35679999999999999999999999999999999974321 13346778999999999999999999964
Q ss_pred ccCCCCceeEEEeeccCC-chhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe
Q 043900 701 DYQGNDFKALVFEFMQNR-SLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL 779 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 779 (953)
..+..++||||+.+| +|.+++.. ...+++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 100 ---~~~~~~lv~e~~~~g~~l~~~~~~----------~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll 163 (335)
T 3dls_A 100 ---NQGFFQLVMEKHGSGLDLFAFIDR----------HPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVI 163 (335)
T ss_dssp ---CSSEEEEEEECCTTSCBHHHHHHT----------CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred ---eCCEEEEEEEeCCCCccHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEE
Confidence 447889999999777 99999852 23589999999999999999999999 99999999999999
Q ss_pred cCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccH
Q 043900 780 DEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNL 858 (953)
Q Consensus 780 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~ 858 (953)
+.++.+||+|||+++....... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||......
T Consensus 164 ~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---- 236 (335)
T 3dls_A 164 AEDFTIKLIDFGSAAYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET---- 236 (335)
T ss_dssp CTTSCEEECCCTTCEECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----
T ss_pred cCCCcEEEeecccceECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----
Confidence 9999999999999987653322 233569999999999988877 78999999999999999999999742110
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
....... +..+++++.+++.+||+.||++|||++|+++.
T Consensus 237 ---------------~~~~~~~--------------------~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 ---------------VEAAIHP--------------------PYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ---------------TTTCCCC--------------------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ---------------HhhccCC--------------------CcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000000 00124568899999999999999999999874
No 170
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.9e-39 Score=349.94 Aligned_cols=267 Identities=19% Similarity=0.204 Sum_probs=199.3
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
..++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.++++++||||+++++++.. +
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~ 106 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-----D 106 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----T
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----C
Confidence 3578999999999999999999999888999999996432 3335778999999999999999999999643 4
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 107 ~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~ 173 (309)
T 2h34_A 107 GQLYVDMRLINGVDLAAMLRR----------QGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFA 173 (309)
T ss_dssp TEEEEEEECCCCEEHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCE
T ss_pred CeEEEEEEecCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCE
Confidence 788999999999999999952 23589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||++....... ........|++.|+|||++.+..++.++||||||+++|||++|+.||...... .........
T Consensus 174 kl~Dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~ 250 (309)
T 2h34_A 174 YLVDFGIASATTDEK-LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQA 250 (309)
T ss_dssp EECSCCC-----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSC
T ss_pred EEecCccCccccccc-cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccC
Confidence 999999998664322 12223456899999999999999999999999999999999999999753211 111111100
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-CHHHHHHHHHHHHHHhcccc
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-NMTNVVRQLQSIKNILLGHR 944 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~evl~~L~~i~~~~~~~~ 944 (953)
.+.. . .....++.++.+++.+||+.||++|| +++++++.|+...+.....+
T Consensus 251 ~~~~-~---------------------------~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~~~ 302 (309)
T 2h34_A 251 IPRP-S---------------------------TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQDR 302 (309)
T ss_dssp CCCG-G---------------------------GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC------
T ss_pred CCCc-c---------------------------ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcccc
Confidence 0000 0 00012345688999999999999999 99999999998765544433
No 171
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4.4e-39 Score=344.42 Aligned_cols=246 Identities=22% Similarity=0.308 Sum_probs=178.2
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
++|++.+.||+|+||.||+|++..+++.||+|+++.. .....+.+.+|++++++++||||+++++++. ..+.
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 87 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-----SKDE 87 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSC
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCCe
Confidence 5799999999999999999999988899999999643 2334567889999999999999999999964 3467
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+ ++++.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 88 ~~lv~e~~-~~~l~~~~~~----------~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl 153 (275)
T 2eue_A 88 IIMVIEYA-GNELFDYIVQ----------RDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKI 153 (275)
T ss_dssp EEEEEECC-CEEHHHHHHT----------SSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEE
T ss_pred EEEEehhc-CCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEE
Confidence 89999999 6788887742 23589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
+|||.+....... ......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||....... .........
T Consensus 154 ~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~ 228 (275)
T 2eue_A 154 ADFGLSNIMTDGN---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV--LFKNISNGV 228 (275)
T ss_dssp CCSSCC------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHTC
T ss_pred eecccceeccCcc---cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhCC
Confidence 9999998664322 2233458999999999988765 789999999999999999999997522110 000000000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. . .+...++++.+++.+||+.||++|||++|+++
T Consensus 229 -----------~-~-------------------~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 229 -----------Y-T-------------------LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp -----------C-C-------------------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -----------C-C-------------------CCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 0 0 00023456889999999999999999999975
No 172
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.6e-38 Score=357.21 Aligned_cols=354 Identities=16% Similarity=0.181 Sum_probs=275.9
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+++.|||+++++.+ +| .++.+++|++|+|++|++++ +| |+.+++|++|+|++|+|++ +| ++++++|++|+|
T Consensus 42 ~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 568999999999984 56 79999999999999999998 44 9999999999999999995 44 999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCC
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGT 163 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 163 (953)
++|++++ +| ++.+++|++|++++|++++ ++ ++++++|++|++++|+..+.+ .+..+++|++|++++|++++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 9999995 44 8999999999999999996 43 899999999999999654455 58899999999999999995
Q ss_pred CCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCC
Q 043900 164 IPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKP 243 (953)
Q Consensus 164 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~ 243 (953)
+| +..+++|+.|++++|++++. + + ..+++|++|++++|++++ +| ++.+++|+.|++++|++++.++ ..+
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~-~--l-~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--~~l 253 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL-D--L-NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--STL 253 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC-C--C-TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC--TTC
T ss_pred ec--cccCCCCCEEECcCCcCCee-c--c-ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH--HHC
Confidence 55 88999999999999999964 2 3 378999999999999997 45 8899999999999999987642 334
Q ss_pred CccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCC
Q 043900 244 QRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFV 323 (953)
Q Consensus 244 ~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~ 323 (953)
++|+.++++.| +|+.|++++|.+.+.+| ++.++
T Consensus 254 ~~L~~L~l~~n---------------------------------------------~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 254 SKLTTLHCIQT---------------------------------------------DLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp TTCCEEECTTC---------------------------------------------CCSCCCCTTCTTCCEEE--CTTCT
T ss_pred CCCCEEeccCC---------------------------------------------CCCEEECCCCccCCccc--ccccc
Confidence 44444444332 34455566666554444 45667
Q ss_pred CCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCC
Q 043900 324 NLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSD 403 (953)
Q Consensus 324 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 403 (953)
+|+.|++++|...+.+|. ..++|+.|++++|. .+++|++++|++++. + ++++++|+.|++++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~------------~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDC---QAAGITELDLSQNP------------KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVN 348 (457)
T ss_dssp TCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT------------TCCEEECTTCCCSCC-C--CTTCTTCSEEECCS
T ss_pred cCCEEECCCCcccceecc---CCCcceEechhhcc------------cCCEEECCCCccccc-c--cccCCcCcEEECCC
Confidence 777777777776655553 34556666666552 356677777777763 2 78888888888888
Q ss_pred CccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCcc
Q 043900 404 NNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLG 464 (953)
Q Consensus 404 N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 464 (953)
|+|++ ++ .+..|++++|.++|. ..+..|+.+++++|+++|.+|..+.
T Consensus 349 N~l~~-l~--------~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 349 AHIQD-FS--------SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp SCCCB-CT--------TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCCCC-cc--------ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 88884 22 234677788888764 3456677778888888877776543
No 173
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-38 Score=343.15 Aligned_cols=264 Identities=23% Similarity=0.362 Sum_probs=210.3
Q ss_pred cCCcccC-cccccceeeEEEEEEc--CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 631 DGFASAN-EIGVGSFGSVYKGILD--QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 631 ~~~~~~~-~ig~G~~g~Vy~~~~~--~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
++|.+.+ .||+|+||.||+|++. .++..||+|+++.. .....+.+.+|++++++++||||+++++++. .+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~ 82 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------AE 82 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------SS
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------CC
Confidence 4566666 8999999999999864 45678999999753 3445678999999999999999999999962 24
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~k 150 (287)
T 1u59_A 83 ALMLVMEMAGGGPLHKFLVGK---------REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAK 150 (287)
T ss_dssp SEEEEEECCTTEEHHHHHTTC---------TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEE
T ss_pred CcEEEEEeCCCCCHHHHHHhC---------CccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEE
Confidence 689999999999999999532 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHh
Q 043900 787 VSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~ 864 (953)
|+|||+++........ .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... ........
T Consensus 151 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~ 228 (287)
T 1u59_A 151 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQ 228 (287)
T ss_dssp ECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHT
T ss_pred ECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhc
Confidence 9999999877543322 12233447899999999988889999999999999999999 99999753221 11111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcccc
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGHR 944 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~~ 944 (953)
... . ..+..+++++.+++.+||+.||++||++.|+++.|+++........
T Consensus 229 ~~~------------~------------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 278 (287)
T 1u59_A 229 GKR------------M------------------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 278 (287)
T ss_dssp TCC------------C------------------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCc------------C------------------CCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcc
Confidence 000 0 0001335678999999999999999999999999999987766543
No 174
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=5.6e-39 Score=344.34 Aligned_cols=248 Identities=23% Similarity=0.324 Sum_probs=199.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|.+..+++.||+|++.... ......+.+|+.++++++||||+++++++. ...
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 82 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DAT 82 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----cCC
Confidence 467999999999999999999999999999999996422 223567889999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 83 ~~~lv~e~~~~~~l~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~ 149 (279)
T 3fdn_A 83 RVYLILEYAPLGTVYRELQK----------LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELK 149 (279)
T ss_dssp EEEEEECCCTTEEHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEE
T ss_pred EEEEEEecCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEE
Confidence 78999999999999999852 23589999999999999999999998 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||++...... ......|++.|+|||++.+..++.++||||+|+++|||++|+.||......+ ....... .
T Consensus 150 l~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~-~- 222 (279)
T 3fdn_A 150 IADFGWSVHAPSS----RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE-TYKRISR-V- 222 (279)
T ss_dssp ECSCCEESCC------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHH-T-
T ss_pred EEeccccccCCcc----cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH-HHHHHHh-C-
Confidence 9999998654322 2234468999999999999999999999999999999999999997422110 0000000 0
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
.... +...++++.+++.+||+.||++|||++|+++.
T Consensus 223 --------~~~~----------------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 223 --------EFTF----------------------PDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp --------CCCC----------------------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred --------CCCC----------------------CCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 0000 00124568899999999999999999999974
No 175
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=4.9e-39 Score=353.22 Aligned_cols=267 Identities=24% Similarity=0.371 Sum_probs=204.2
Q ss_pred hcCCcccCcccccceeeEEEEE-----EcCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGI-----LDQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~-----~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.++|++.+.||+|+||.||+|+ ...+++.||||++... .......+.+|+.++++++||||+++++++.
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 103 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc-----
Confidence 4679999999999999999999 4455678999999643 3445668899999999999999999999964
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC--
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE-- 781 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-- 781 (953)
.....++||||+++|+|.+++...... ......+++.+++.++.|++.||+|||+. +|+||||||+||+++.
T Consensus 104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~ 177 (327)
T 2yfx_A 104 QSLPRFILMELMAGGDLKSFLRETRPR---PSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPG 177 (327)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHTSCC---SSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSS
T ss_pred CCCCcEEEEecCCCCcHHHHHHhhccc---ccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCC
Confidence 346789999999999999999754322 11234689999999999999999999999 9999999999999984
Q ss_pred -CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHH
Q 043900 782 -EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLH 859 (953)
Q Consensus 782 -~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~ 859 (953)
+..+||+|||+++...............||+.|+|||++.+..++.++||||||+++|||+| |+.||...... ...
T Consensus 178 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~ 255 (327)
T 2yfx_A 178 PGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVL 255 (327)
T ss_dssp TTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHH
T ss_pred CcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHH
Confidence 44699999999986543333333344568899999999988899999999999999999998 99998753211 111
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
........ .. ....++.++.+++.+||+.||++|||+.|+++.|+.+...
T Consensus 256 ~~~~~~~~------------~~------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 256 EFVTSGGR------------MD------------------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp HHHHTTCC------------CC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHhcCCC------------CC------------------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 11110000 00 0012345688999999999999999999999999988654
No 176
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=9.9e-39 Score=351.55 Aligned_cols=277 Identities=20% Similarity=0.263 Sum_probs=205.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||+||+|++..+++.||+|+++.. ..+.+.+|++++++++ ||||+++++++.. ......
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~---~~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKD---PVSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeecc---CCCCce
Confidence 36799999999999999999999988899999999743 3467889999999997 9999999999753 224678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC-cEEE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM-MAHV 787 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kL 787 (953)
++||||+++++|.+++. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||
T Consensus 109 ~lv~e~~~~~~l~~~~~-------------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl 172 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQ-------------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRL 172 (330)
T ss_dssp EEEEECCCCCCHHHHGG-------------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEE
T ss_pred EEEEeccCchhHHHHHH-------------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEE
Confidence 99999999999999884 488899999999999999999999 999999999999999776 8999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
+|||+++....... .....|+..|+|||++.+ ..++.++||||+||++|||++|+.||..................
T Consensus 173 ~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~ 249 (330)
T 3nsz_A 173 IDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLG 249 (330)
T ss_dssp CCCTTCEECCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHC
T ss_pred EeCCCceEcCCCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcC
Confidence 99999987653322 233468999999999877 67899999999999999999999999643332222222222111
Q ss_pred CchhhhhccccccCCch---hhhhcccchhh--hhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDE---DLAVHGNQRQR--QARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.....+.++........ +.......... ..........++++.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 250 TEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp HHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 11111111111100000 00000000000 0000111124567999999999999999999999975
No 177
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=9.7e-39 Score=361.98 Aligned_cols=254 Identities=20% Similarity=0.259 Sum_probs=193.8
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--------hhhHHHHHHHHHHHhhcCCCCeeEEEeeecc
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--------HGAFKSFIAECNTLKNIRHRNLVKILTACSG 699 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~ 699 (953)
...++|.+.+.||+|+||+||+|.+..+++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 34678999999999999999999999999999999996432 1122357899999999999999999998632
Q ss_pred cccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe
Q 043900 700 VDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL 779 (953)
Q Consensus 700 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 779 (953)
+..++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+|||+
T Consensus 212 ------~~~~lv~e~~~~g~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll 272 (419)
T 3i6u_A 212 ------EDYYIVLELMEGGELFDKVVG----------NKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLL 272 (419)
T ss_dssp ------SEEEEEEECCTTCBGGGGTSS----------SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred ------CceEEEEEcCCCCcHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEE
Confidence 457999999999999998852 23689999999999999999999999 99999999999999
Q ss_pred cCCC---cEEEeccccceecCCCCCcccccccccccccccccccCC---CCCCcccchHHHHHHHHHHHhCCCCCCCccc
Q 043900 780 DEEM---MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG---SEVSINGDVYSYGILLLELVTRKKPVDSMFE 853 (953)
Q Consensus 780 ~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDv~slG~vl~elltg~~pf~~~~~ 853 (953)
+.++ .+||+|||+|+..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 273 ~~~~~~~~~kl~DFG~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~ 349 (419)
T 3i6u_A 273 SSQEEDCLIKITDFGHSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT 349 (419)
T ss_dssp SSSSSSCCEEECCSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS
T ss_pred ecCCCcceEEEeecccceecCCC---ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc
Confidence 7544 5999999999876432 22234569999999999864 5788999999999999999999999975332
Q ss_pred CCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 854 GDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... ............. ......+++++.+++.+||+.||++|||++|+++
T Consensus 350 ~~~-~~~~i~~~~~~~~---------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 350 QVS-LKDQITSGKYNFI---------------------------PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp SCC-HHHHHHTTCCCCC---------------------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hHH-HHHHHhcCCCCCC---------------------------chhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 221 1111111100000 0001123567899999999999999999999986
No 178
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=4.8e-39 Score=342.63 Aligned_cols=258 Identities=27% Similarity=0.364 Sum_probs=206.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|.+.++ +.||+|+++.... ..+.+.+|++++++++||||+++++++. ..+..+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 79 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNK-DKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC 79 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT-EEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSCE
T ss_pred hhheeeeeEecCCCceeEEEEEecCC-CeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCeE
Confidence 35788999999999999999999754 5899999975433 3467899999999999999999999964 346789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++++|.+++... ...+++..++.++.|++.||+|||+. +++||||||+||+++.++.+||+|
T Consensus 80 lv~e~~~~~~L~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~d 147 (267)
T 3t9t_A 80 LVTEFMEHGCLSDYLRTQ---------RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSD 147 (267)
T ss_dssp EEECCCTTCBHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECC
T ss_pred EEEeCCCCCcHHHHHhhC---------cccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcc
Confidence 999999999999999532 23588999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||.++..... .........++..|+|||++.+..++.++||||+|+++|||++ |+.||....... ...........
T Consensus 148 fg~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~i~~~~~~ 224 (267)
T 3t9t_A 148 FGMTRFVLDD-QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGFRL 224 (267)
T ss_dssp TTGGGGBCCH-HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTCCC
T ss_pred cccccccccc-cccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH--HHHHHhcCCcC
Confidence 9999865321 1112233457889999999998899999999999999999999 899987522110 11000000000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.. +...+.++.+++.+||+.||++|||++|+++.|+++.+.
T Consensus 225 --------~~----------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 225 --------YK----------------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp --------CC----------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --------CC----------------------CccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 00 001245688999999999999999999999999999763
No 179
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.4e-40 Score=361.68 Aligned_cols=268 Identities=23% Similarity=0.355 Sum_probs=186.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhh--cCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKN--IRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++. ++.||||+++.. ....+.+|.+++.. ++||||+++++++... ......
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKD-NGTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT--TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEE-CSSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc--CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccC-CCccce
Confidence 367999999999999999999875 457999998643 33567778888887 7999999999997543 111236
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHh--------hCCCCCeEeecCCCCCeEe
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLH--------HDCQPPITHCDLKPSNVLL 779 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIll 779 (953)
.++||||+++|+|.+++.. ..+++..++.++.|++.||+||| +. +|+||||||+||++
T Consensus 76 ~~lv~e~~~~g~L~~~l~~-----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~ 141 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNR-----------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILV 141 (303)
T ss_dssp EEEEEECCTTCCHHHHHHH-----------CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-C
T ss_pred eEEEEeccCCCCHHHHHhc-----------cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEE
Confidence 8999999999999999952 24777889999999999999999 77 99999999999999
Q ss_pred cCCCcEEEeccccceecCCCCCcc--cccccccccccccccccCCC------CCCcccchHHHHHHHHHHHhC-------
Q 043900 780 DEEMMAHVSDFGLARFLPLSPAQT--SSIDAKGSIGYIAPEYGLGS------EVSINGDVYSYGILLLELVTR------- 844 (953)
Q Consensus 780 ~~~~~~kL~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDv~slG~vl~elltg------- 844 (953)
+.++.+||+|||+++......... ......||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 142 ~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~ 221 (303)
T 3gxj_A 142 KKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH 221 (303)
T ss_dssp CTTCCC-BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC
T ss_pred CCCCCEEEeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999997664333221 12334699999999998776 445789999999999999999
Q ss_pred ---CCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCC
Q 043900 845 ---KKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPG 921 (953)
Q Consensus 845 ---~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 921 (953)
..||............. ..........+.. ..++ ...++++.+.+++.+||+.||+
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------~~~~-~~~~~~~~l~~li~~cl~~dP~ 280 (303)
T 3gxj_A 222 EDYQLPYYDLVPSDPSVEEM--------RKVVCEQKLRPNI------------PNRW-QSCEALRVMAKIMRECWYANGA 280 (303)
T ss_dssp -CCCCTTTTTCC-CCCCC-C--------HHHHTTSCCCCCC------------CGGG-GSSHHHHHHHHHHHTTCCSSGG
T ss_pred ceeeccccccCCCCccHHHH--------HHHHHHhhcCCCc------------cccc-cchhhHHHHHHHHHHHhccCcc
Confidence 55554322211111000 0111111111111 0111 1125677899999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 043900 922 DRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 922 ~RPt~~evl~~L~~i~~ 938 (953)
+|||++||++.|+++.+
T Consensus 281 ~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 281 ARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp GSCCHHHHHHHHHC-CC
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999998754
No 180
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=3.9e-39 Score=345.38 Aligned_cols=254 Identities=28% Similarity=0.357 Sum_probs=198.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|++.+.||+|+||.||+|++. ++.||+|+++... ..+.+.+|++++++++||||+++++++.. ..+..+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~~ 91 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLY 91 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCE
T ss_pred hhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCceE
Confidence 467999999999999999999885 4689999997433 45778999999999999999999998632 335789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||+++++|.+++.... ...+++..++.++.|++.||+|||+. +++||||||+||+++.++.+||+|
T Consensus 92 lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~D 160 (278)
T 1byg_A 92 IVTEYMAKGSLVDYLRSRG--------RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSD 160 (278)
T ss_dssp EEECCCTTEEHHHHHHHHH--------HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECC
T ss_pred EEEecCCCCCHHHHHHhcc--------cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEee
Confidence 9999999999999995321 12478999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCc
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
||.+...... .....+++.|+|||++.+..++.++||||||+++|||+| |+.||......+ ........
T Consensus 161 fg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~--~~~~~~~~--- 230 (278)
T 1byg_A 161 FGLTKEASST-----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKG--- 230 (278)
T ss_dssp CCC-----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG--HHHHHTTT---
T ss_pred cccccccccc-----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhcC---
Confidence 9999865322 122347889999999998899999999999999999998 999997532211 11111000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.... ....+++++.+++.+||+.||++|||+.|+++.|++++..
T Consensus 231 ---------~~~~------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 231 ---------YKMD------------------APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp ---------CCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---------CCCC------------------CcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 0000 0012345789999999999999999999999999999765
No 181
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=360.47 Aligned_cols=261 Identities=13% Similarity=0.092 Sum_probs=206.0
Q ss_pred hhcCCcccCcccccceeeEEEEE-----EcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC---CCCeeEEEeeeccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGI-----LDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR---HRNLVKILTACSGV 700 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~ 700 (953)
..++|.+.+.||+|+||+||+|+ ...+++.||+|+++... ...+.+|++++++++ |+||+++++++..
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~- 138 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLF- 138 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC-
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeec-
Confidence 45679999999999999999994 55667789999997543 345667777777775 9999999999643
Q ss_pred ccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec
Q 043900 701 DYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD 780 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 780 (953)
.+..++||||+++|+|.+++...... ....+++..++.|+.||+.||+|||+. +|+||||||+|||++
T Consensus 139 ----~~~~~lv~e~~~~g~L~~~l~~~~~~-----~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~ 206 (365)
T 3e7e_A 139 ----QNGSVLVGELYSYGTLLNAINLYKNT-----PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILG 206 (365)
T ss_dssp ----SSCEEEEECCCCSCBHHHHHHHHHTS-----TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEEC
T ss_pred ----CCCcEEEEeccCCCcHHHHHHHhhcc-----cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEec
Confidence 47789999999999999999643211 234699999999999999999999999 999999999999999
Q ss_pred C-----------CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCC
Q 043900 781 E-----------EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVD 849 (953)
Q Consensus 781 ~-----------~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~ 849 (953)
. ++.+||+|||+|+.+.............||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 207 ~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~ 286 (365)
T 3e7e_A 207 NGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKV 286 (365)
T ss_dssp GGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCE
T ss_pred ccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccc
Confidence 8 89999999999987654344444556679999999999999999999999999999999999999986
Q ss_pred CcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCC-CCHHH
Q 043900 850 SMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDR-MNMTN 928 (953)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-Pt~~e 928 (953)
........ ........ ...+.+.+++..|++.+|.+| |++++
T Consensus 287 ~~~~~~~~----------------~~~~~~~~---------------------~~~~~~~~~~~~~l~~~p~~r~~~~~~ 329 (365)
T 3e7e_A 287 KNEGGECK----------------PEGLFRRL---------------------PHLDMWNEFFHVMLNIPDCHHLPSLDL 329 (365)
T ss_dssp EEETTEEE----------------ECSCCTTC---------------------SSHHHHHHHHHHHHCCCCTTCCCCHHH
T ss_pred cCCCCcee----------------echhcccc---------------------CcHHHHHHHHHHHcCCCCCCcchHHHH
Confidence 43221100 00000000 013457789999999999998 68899
Q ss_pred HHHHHHHHHHHhcc
Q 043900 929 VVRQLQSIKNILLG 942 (953)
Q Consensus 929 vl~~L~~i~~~~~~ 942 (953)
+.+.|+++......
T Consensus 330 l~~~l~~~l~~~~~ 343 (365)
T 3e7e_A 330 LRQKLKKVFQQHYT 343 (365)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 99999988766443
No 182
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.6e-39 Score=372.27 Aligned_cols=260 Identities=27% Similarity=0.442 Sum_probs=203.1
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|.+..+ ..||||+++.... ..+.+.+|++++++++||||++++++|.. +..
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~ 253 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPI 253 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCC-ceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC------Cce
Confidence 345788999999999999999999875 4799999975432 35678999999999999999999999642 567
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++|+|.++++... ...+++.+++.++.|++.||+|||++ +|+||||||+|||++.++.+||+
T Consensus 254 ~iv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~ 322 (452)
T 1fmk_A 254 YIVTEYMSKGSLLDFLKGET--------GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVA 322 (452)
T ss_dssp EEEECCCTTCBHHHHHSHHH--------HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred EEEehhhcCCCHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEEC
Confidence 99999999999999996321 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||+++...... ........++..|+|||++.+..++.++|||||||++|||++ |+.||.+....+ ........
T Consensus 323 DfG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~-- 397 (452)
T 1fmk_A 323 DFGLARLIEDNE-YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERG-- 397 (452)
T ss_dssp CCCTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTT--
T ss_pred CCccceecCCCc-eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC--
Confidence 999998764322 122233447889999999998999999999999999999999 999997532211 11100000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHh
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNIL 940 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~ 940 (953)
. +...+..+++++.+++.+||+.||++|||++++++.|+++....
T Consensus 398 ----------~------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~ 442 (452)
T 1fmk_A 398 ----------Y------------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 442 (452)
T ss_dssp ----------C------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred ----------C------------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence 0 00001134567899999999999999999999999999875443
No 183
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=8.6e-39 Score=349.74 Aligned_cols=269 Identities=23% Similarity=0.270 Sum_probs=198.3
Q ss_pred hcCCccc-CcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASA-NEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.+.|.+. +.||+|+||.||+|++..+++.||||+++.........+.+|++++.++ +||||+++++++.. .+.
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~-----~~~ 85 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEE-----EDR 85 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEee-----CCE
Confidence 3568874 7899999999999999988889999999766555677899999999985 79999999999643 478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc---
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM--- 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--- 784 (953)
.++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 86 ~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~ 152 (316)
T 2ac3_A 86 FYLVFEKMRGGSILSHIHK----------RRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSP 152 (316)
T ss_dssp EEEEEECCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCS
T ss_pred EEEEEEcCCCCcHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCc
Confidence 9999999999999999953 23589999999999999999999999 9999999999999998775
Q ss_pred EEEeccccceecCCCCC-----cccccccccccccccccccCC-----CCCCcccchHHHHHHHHHHHhCCCCCCCcccC
Q 043900 785 AHVSDFGLARFLPLSPA-----QTSSIDAKGSIGYIAPEYGLG-----SEVSINGDVYSYGILLLELVTRKKPVDSMFEG 854 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDv~slG~vl~elltg~~pf~~~~~~ 854 (953)
+||+|||++........ ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 153 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~ 232 (316)
T 2ac3_A 153 VKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGS 232 (316)
T ss_dssp EEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCS
T ss_pred eEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccc
Confidence 99999999976532211 111223459999999999875 56889999999999999999999999764433
Q ss_pred CccHHHHHHh-hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 855 DMNLHNFARM-ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 855 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+..+...... .......+.+........ . ......+.++.+++.+||+.||++|||++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~---~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 233 DCGWDRGEACPACQNMLFESIQEGKYEFP------------D---KDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp CSCC----CCHHHHHHHHHHHHHCCCCCC------------H---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhccCcccC------------c---hhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 2111000000 000000000000000000 0 001124567899999999999999999999987
No 184
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=344.05 Aligned_cols=250 Identities=23% Similarity=0.358 Sum_probs=182.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++. ..+
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----DSN 84 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----CSS
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----cCC
Confidence 467999999999999999999998888899999996432 223477899999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~k 152 (278)
T 3cok_A 85 YVYLVLEMCHNGEMNRYLKNR---------VKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIK 152 (278)
T ss_dssp EEEEEEECCTTEEHHHHHHTC---------SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEE
T ss_pred eEEEEEecCCCCcHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEE
Confidence 889999999999999998632 23589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||.+........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||........
T Consensus 153 l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---------- 220 (278)
T 3cok_A 153 IADFGLATQLKMPHE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT---------- 220 (278)
T ss_dssp ECCCTTCEECC------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------------
T ss_pred EEeecceeeccCCCC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH----------
Confidence 999999987643221 22235689999999999999999999999999999999999999975322110
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...... .... .+...+.++.+++.+||+.||++|||++|+++
T Consensus 221 ---~~~~~~----~~~~----------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 221 ---LNKVVL----ADYE----------------MPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ------CCS----SCCC----------------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ---HHHHhh----cccC----------------CccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 000000 0000 00023456889999999999999999999986
No 185
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=5.2e-39 Score=357.14 Aligned_cols=280 Identities=20% Similarity=0.243 Sum_probs=188.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeeccc-ccCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGV-DYQGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-~~~~~ 705 (953)
..++|++.+.||+|+||.||+|.+..+++.||||++... .....+.+.+|+++++.++||||+++++++... .....
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 357899999999999999999999999999999998642 334567788999999999999999999997542 12233
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||+ +++|.+++.. ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~-----------~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~ 171 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKC-----------QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCEL 171 (367)
T ss_dssp CCCEEEEECC-CEECC----------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred CeEEEEeccc-CCCHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCE
Confidence 5689999999 7899998852 3589999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+......
T Consensus 172 kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~ 245 (367)
T 2fst_X 172 KILDFGLARHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID-QLKLILRL 245 (367)
T ss_dssp EECC--------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHH
T ss_pred EEeecccccccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH
Confidence 99999999865321 234568999999999877 678999999999999999999999997632211 11111111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhh-hhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARI-NSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
......+............. .......+...+ ......++++.+++.+||+.||++|||++|+++
T Consensus 246 -~g~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 246 -VGTPGAELLKKISSESARNY-IQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp -HCSCCHHHHTTCCCHHHHHH-HHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -hCCCCHHHHHHhhhHHHHHH-HhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 11110111100000000000 000000000000 001123467899999999999999999999986
No 186
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=3.7e-39 Score=346.62 Aligned_cols=254 Identities=23% Similarity=0.292 Sum_probs=196.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++. .....
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~ 95 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHNM 95 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCeE
Confidence 357999999999999999999999888899999997433 334578899999999999999999999964 34778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCCcE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEMMA 785 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~ 785 (953)
++||||+++|+|.+++..... ....+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+
T Consensus 96 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~ 166 (285)
T 3is5_A 96 YIVMETCEGGELLERIVSAQA------RGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPI 166 (285)
T ss_dssp EEEECCCSCCBHHHHHHHHHH------HTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCE
T ss_pred EEEEEeCCCCcHHHHHHhhhh------cccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCE
Confidence 999999999999999853221 124689999999999999999999999 99999999999999 456789
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+++...... ......||+.|+|||++. ..++.++||||+|+++|||++|+.||......+ ........
T Consensus 167 kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~--~~~~~~~~ 240 (285)
T 3is5_A 167 KIIDFGLAELFKSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE--VQQKATYK 240 (285)
T ss_dssp EECCCCCCCC-------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHC
T ss_pred EEEeeecceecCCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH--HHhhhccC
Confidence 999999998654322 223456899999999875 568999999999999999999999997532111 11100000
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.+. .... ....++++.+++.+||+.||++|||++|+++
T Consensus 241 ~~~---------~~~~-------------------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 241 EPN---------YAVE-------------------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp CCC---------CCC---------------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred Ccc---------cccc-------------------cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 0000 0012356889999999999999999999975
No 187
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=5.5e-39 Score=346.65 Aligned_cols=263 Identities=23% Similarity=0.342 Sum_probs=206.8
Q ss_pred hhcCCcccC-cccccceeeEEEEEE--cCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 629 ATDGFASAN-EIGVGSFGSVYKGIL--DQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 629 ~~~~~~~~~-~ig~G~~g~Vy~~~~--~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
..++|.+.+ .||+|+||.||+|.+ ..+++.||||+++... ....+.+.+|++++++++||||+++++++.
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----- 88 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE----- 88 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-----
Confidence 345788888 999999999999965 4556789999997432 334578999999999999999999999962
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
.+..++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 89 -~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~ 154 (291)
T 1xbb_A 89 -AESWMLVMEMAELGPLNKYLQQ----------NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQH 154 (291)
T ss_dssp -SSSEEEEEECCTTEEHHHHHHH----------CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETT
T ss_pred -CCCcEEEEEeCCCCCHHHHHHh----------CcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCC
Confidence 2568999999999999999953 23589999999999999999999999 999999999999999999
Q ss_pred cEEEeccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~ 861 (953)
.+||+|||+++........ .......+++.|+|||++.+..++.++||||||+++|||++ |+.||...... .....
T Consensus 155 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~ 232 (291)
T 1xbb_A 155 YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAM 232 (291)
T ss_dssp EEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHH
T ss_pred cEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHH
Confidence 9999999999877543322 12223346789999999988889999999999999999999 99999753221 11111
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhc
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILL 941 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~ 941 (953)
...... . ..+..+++++.+++.+||+.||++|||+.|+++.|+++-....
T Consensus 233 ~~~~~~------------~------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 282 (291)
T 1xbb_A 233 LEKGER------------M------------------GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 282 (291)
T ss_dssp HHTTCC------------C------------------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCC------------C------------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 110000 0 0001234578999999999999999999999999999876554
Q ss_pred c
Q 043900 942 G 942 (953)
Q Consensus 942 ~ 942 (953)
+
T Consensus 283 ~ 283 (291)
T 1xbb_A 283 N 283 (291)
T ss_dssp H
T ss_pred h
Confidence 3
No 188
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.3e-38 Score=349.33 Aligned_cols=266 Identities=17% Similarity=0.227 Sum_probs=207.5
Q ss_pred CCCcCHHHHHHhhcCCccc-CcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhc-CCCCeeEE
Q 043900 618 FPNISYQNLYNATDGFASA-NEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNI-RHRNLVKI 693 (953)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~~ 693 (953)
-++..++......++|.+. +.||+|+||.||+|.+..+++.||+|+++... ......+.+|+.+++++ +||||+++
T Consensus 15 ~~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~ 94 (327)
T 3lm5_A 15 TENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINL 94 (327)
T ss_dssp -CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCE
T ss_pred chhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 3455666666777788887 89999999999999999988999999997432 33457889999999999 57999999
Q ss_pred EeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCC
Q 043900 694 LTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLK 773 (953)
Q Consensus 694 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 773 (953)
++++. .....++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||+. +|+|||||
T Consensus 95 ~~~~~-----~~~~~~lv~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dik 158 (327)
T 3lm5_A 95 HEVYE-----NTSEIILILEYAAGGEIFSLCLPEL--------AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLK 158 (327)
T ss_dssp EEEEE-----CSSEEEEEEECCTTEEGGGGGSSCC---------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCC
T ss_pred EEEEE-----eCCeEEEEEEecCCCcHHHHHHHhc--------ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCC
Confidence 99964 4477999999999999999985322 23689999999999999999999999 99999999
Q ss_pred CCCeEecC---CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCC
Q 043900 774 PSNVLLDE---EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDS 850 (953)
Q Consensus 774 p~NIll~~---~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~ 850 (953)
|+||+++. ++.+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 159 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~ 235 (327)
T 3lm5_A 159 PQNILLSSIYPLGDIKIVDFGMSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG 235 (327)
T ss_dssp GGGEEESCBTTBCCEEECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred hHHEEEecCCCCCcEEEeeCccccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999987 7899999999998764322 22335699999999999999999999999999999999999999975
Q ss_pred cccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHH
Q 043900 851 MFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVV 930 (953)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl 930 (953)
....+ ............. ......+++.+.+++.+||+.||++|||++|++
T Consensus 236 ~~~~~-~~~~i~~~~~~~~----------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll 286 (327)
T 3lm5_A 236 EDNQE-TYLNISQVNVDYS----------------------------EETFSSVSQLATDFIQSLLVKNPEKRPTAEICL 286 (327)
T ss_dssp SSHHH-HHHHHHHTCCCCC----------------------------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred CCchH-HHHHHHhcccccC----------------------------chhhcccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 32211 0111100000000 000012345688999999999999999999997
Q ss_pred H
Q 043900 931 R 931 (953)
Q Consensus 931 ~ 931 (953)
+
T Consensus 287 ~ 287 (327)
T 3lm5_A 287 S 287 (327)
T ss_dssp T
T ss_pred C
Confidence 5
No 189
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=363.89 Aligned_cols=257 Identities=19% Similarity=0.218 Sum_probs=201.4
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
...++|++.+.||+|+||.||+|+.+.+++.||+|+++.. .......+.+|..++..++||||+++++++. +
T Consensus 58 ~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~-----~ 132 (412)
T 2vd5_A 58 LQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ-----D 132 (412)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE-----C
T ss_pred CChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----e
Confidence 3467899999999999999999999988899999999642 2223455789999999999999999999854 4
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++|+|.+++... ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~---------~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~ 200 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKF---------GERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGH 200 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHH---------SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCC
Confidence 47899999999999999999632 12589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccC-------CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL-------GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
+||+|||+++....... ......+||+.|+|||++. +..++.++|||||||++|||++|+.||......+ .
T Consensus 201 vkL~DFGla~~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~ 278 (412)
T 2vd5_A 201 IRLADFGSCLKLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE-T 278 (412)
T ss_dssp EEECCCTTCEECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-H
T ss_pred EEEeechhheeccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH-H
Confidence 99999999987653322 2223457999999999987 4578999999999999999999999997532111 0
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCC---CCHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDR---MNMTNVVR 931 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---Pt~~evl~ 931 (953)
+...... . .... . + .....+++++.+++.+||. +|++| |+++|+++
T Consensus 279 ~~~i~~~----~-~~~~---~-p------------------~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 279 YGKIVHY----K-EHLS---L-P------------------LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHHHHTH----H-HHCC---C-C----------------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred HHHHHhc----c-cCcC---C-C------------------ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 1111100 0 0000 0 0 0001235678999999999 99998 58888865
No 190
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=353.13 Aligned_cols=267 Identities=21% Similarity=0.225 Sum_probs=196.1
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccc---cCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVD---YQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~---~~~ 704 (953)
...+|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|+.+++++. ||||+++++++.... ...
T Consensus 26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 3457999999999999999999999888899999997666667788999999999996 999999999974221 234
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC--eEeecCCCCCeEecCC
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP--ITHCDLKPSNVLLDEE 782 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~ 782 (953)
....++||||++ |+|.+++..... ...+++.+++.++.||+.||+|||+. + |+||||||+||+++.+
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~-------~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~ 174 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMES-------RGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQ 174 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHT-------TCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTT
T ss_pred CceEEEEEEecC-CCHHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCC
Confidence 456899999995 799998853221 23589999999999999999999998 7 9999999999999999
Q ss_pred CcEEEeccccceecCCCCCcc----------ccccccccccccccccc---CCCCCCcccchHHHHHHHHHHHhCCCCCC
Q 043900 783 MMAHVSDFGLARFLPLSPAQT----------SSIDAKGSIGYIAPEYG---LGSEVSINGDVYSYGILLLELVTRKKPVD 849 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~sDv~slG~vl~elltg~~pf~ 849 (953)
+.+||+|||+++......... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||.
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~ 254 (337)
T 3ll6_A 175 GTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFE 254 (337)
T ss_dssp SCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence 999999999998765432211 11134589999999998 56778999999999999999999999996
Q ss_pred CcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHH
Q 043900 850 SMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNV 929 (953)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev 929 (953)
...... ....... .... ...+..+.+++.+||+.||++|||++|+
T Consensus 255 ~~~~~~-----~~~~~~~------------~~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~e~ 299 (337)
T 3ll6_A 255 DGAKLR-----IVNGKYS------------IPPH------------------DTQYTVFHSLIRAMLQVNPEERLSIAEV 299 (337)
T ss_dssp ----------------CC------------CCTT------------------CCSSGGGHHHHHHHSCSSGGGSCCHHHH
T ss_pred chhHHH-----hhcCccc------------CCcc------------------cccchHHHHHHHHHccCChhhCcCHHHH
Confidence 421110 0000000 0000 0112347789999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 043900 930 VRQLQSIKNILL 941 (953)
Q Consensus 930 l~~L~~i~~~~~ 941 (953)
++.|+.+.....
T Consensus 300 l~~l~~~~~~~~ 311 (337)
T 3ll6_A 300 VHQLQEIAAARN 311 (337)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhccC
Confidence 999999987643
No 191
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=6.4e-39 Score=351.01 Aligned_cols=249 Identities=20% Similarity=0.244 Sum_probs=178.8
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCCCCceeEEEee
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQGNDFKALVFEF 714 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~lv~e~ 714 (953)
.+.||+|+||.||+|.+..+++.||||++... ....+.+|+.+++.+. ||||+++++++. +....++||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~-----~~~~~~lv~e~ 87 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFH-----DQLHTFLVMEL 87 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSEEEEEECC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEE-----cCCEEEEEEEc
Confidence 47899999999999999998899999999643 3466788999999997 999999999964 44788999999
Q ss_pred ccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC---cEEEeccc
Q 043900 715 MQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM---MAHVSDFG 791 (953)
Q Consensus 715 ~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kL~DfG 791 (953)
+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 88 ~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg 154 (325)
T 3kn6_A 88 LNGGELFERIKK----------KKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFG 154 (325)
T ss_dssp CCSCBHHHHHHH----------CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCT
T ss_pred cCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccc
Confidence 999999999953 23689999999999999999999999 999999999999998765 89999999
Q ss_pred cceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCC--ccHHHHHHhhCCch
Q 043900 792 LARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGD--MNLHNFARMALPDH 869 (953)
Q Consensus 792 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~--~~~~~~~~~~~~~~ 869 (953)
+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ...........
T Consensus 155 ~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~--- 229 (325)
T 3kn6_A 155 FARLKPPDN--QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIK--- 229 (325)
T ss_dssp TCEECCC------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHT---
T ss_pred cceecCCCC--CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHH---
Confidence 998764322 22334568999999999999999999999999999999999999997532210 11111111110
Q ss_pred hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 870 VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 870 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...... .......+++++.+++.+||+.||++|||++|+++
T Consensus 230 -----~~~~~~----------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 230 -----KGDFSF----------------EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp -----TTCCCC----------------CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred -----cCCCCC----------------CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 000000 00111234567899999999999999999999873
No 192
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=354.33 Aligned_cols=252 Identities=22% Similarity=0.360 Sum_probs=191.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCC--CCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRH--RNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|.+.. ++.||||+++.. .....+.+.+|+.++++++| |||+++++++. .+
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-----~~ 81 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TD 81 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTT-SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCC-CCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-----eC
Confidence 3569999999999999999999865 568999999743 33445788999999999976 99999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||| +.+++|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++ ++.+
T Consensus 82 ~~~~lv~e-~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~ 146 (343)
T 3dbq_A 82 QYIYMVME-CGNIDLNSWLKK----------KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGML 146 (343)
T ss_dssp SEEEEEEC-CCSEEHHHHHHH----------SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEE
T ss_pred CEEEEEEe-CCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcE
Confidence 78999999 458899999953 23688999999999999999999999 999999999999997 5789
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCC-----------CCCCcccchHHHHHHHHHHHhCCCCCCCcccC
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-----------SEVSINGDVYSYGILLLELVTRKKPVDSMFEG 854 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDv~slG~vl~elltg~~pf~~~~~~ 854 (953)
||+|||+++...............||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 147 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~ 226 (343)
T 3dbq_A 147 KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ 226 (343)
T ss_dssp EECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH
T ss_pred EEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH
Confidence 9999999987654433333345579999999999864 67899999999999999999999999753221
Q ss_pred CccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 855 DMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
..... ..++........ ...+.++.+++.+||+.||++|||+.|+++.
T Consensus 227 ~~~~~------------~~~~~~~~~~~~------------------~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 227 ISKLH------------AIIDPNHEIEFP------------------DIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp HHHHH------------HHHCTTSCCCCC------------------CCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHH------------HHhcCCcccCCc------------------ccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 11111 111111000000 0113458899999999999999999999863
No 193
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=8.2e-39 Score=350.69 Aligned_cols=249 Identities=20% Similarity=0.231 Sum_probs=190.1
Q ss_pred hcCCcccCcccccceeeEEEEEEc---CCCeEEEEEEeeccc----hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILD---QGKTTVAVKVFNLLH----HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
.++|++.+.||+|+||.||+|+.. .+++.||+|+++... ......+.+|+.++++++||||+++++++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 91 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQ---- 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEE----
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEE----
Confidence 467999999999999999999985 567799999997432 234456788999999999999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
..+..++||||+++|+|.+++.. ...+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 92 -~~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~ 157 (327)
T 3a62_A 92 -TGGKLYLILEYLSGGELFMQLER----------EGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQ 157 (327)
T ss_dssp -CSSCEEEEEECCTTEEHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTT
T ss_pred -cCCEEEEEEeCCCCCcHHHHHHh----------CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCC
Confidence 34789999999999999999852 23588999999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
+.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ......
T Consensus 158 ~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~ 234 (327)
T 3a62_A 158 GHVKLTDFGLCKESIHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK-TIDKIL 234 (327)
T ss_dssp SCEEECCCSCC------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHH
T ss_pred CcEEEEeCCcccccccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH-HHHHHH
Confidence 999999999997543221 22234569999999999999999999999999999999999999997532111 001100
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-----CHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-----NMTNVVR 931 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~evl~ 931 (953)
.. .. .. +...+.++.+++.+||+.||++|| +++|+++
T Consensus 235 ~~------------~~-~~-------------------p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 235 KC------------KL-NL-------------------PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HT------------CC-CC-------------------CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred hC------------CC-CC-------------------CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 00 00 00 002245688999999999999999 6777765
No 194
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=1.2e-38 Score=368.01 Aligned_cols=254 Identities=21% Similarity=0.316 Sum_probs=204.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++.. .......+.+|+.++++++||||+++++++. ..+
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~-----~~~ 257 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYE-----TKD 257 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEe-----eCC
Confidence 45789999999999999999999988899999999642 2234567889999999999999999999854 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.... ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+|
T Consensus 258 ~l~lVmEy~~gg~L~~~l~~~~--------~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vK 326 (576)
T 2acx_A 258 ALCLVLTLMNGGDLKFHIYHMG--------QAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIR 326 (576)
T ss_dssp EEEEEECCCCSCBHHHHHHSSS--------SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEE
T ss_pred EEEEEEEcCCCCcHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeE
Confidence 8999999999999999986432 22589999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+|+....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..........
T Consensus 327 L~DFGla~~~~~~~~---~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~~~i~ 402 (576)
T 2acx_A 327 ISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVERLVK 402 (576)
T ss_dssp ECCCTTCEECCTTCC---EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHHHHHH
T ss_pred EEecccceecccCcc---ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHHHHhh
Confidence 999999987753322 233479999999999999999999999999999999999999997633221 1111111000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-----CHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-----NMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~evl~ 931 (953)
. ..... +...++++.+++.+||+.||++|| +++|+++
T Consensus 403 -----~-~~~~~----------------------p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 403 -----E-VPEEY----------------------SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp -----H-CCCCC----------------------CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred -----c-ccccC----------------------CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 0 00000 012345688999999999999999 7788875
No 195
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=354.49 Aligned_cols=275 Identities=21% Similarity=0.316 Sum_probs=195.3
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchh-hHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHG-AFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
++|++.+.||+|+||+||+|++..+++.||+|+++..... ....+.+|++++++++||||+++++++. .....+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence 5799999999999999999999988889999999643321 2224557999999999999999999964 347789
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEec
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSD 789 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 789 (953)
+||||++ |+|.+++... ...+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+|
T Consensus 77 lv~e~~~-~~l~~~~~~~---------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~D 143 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDC---------GNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLAD 143 (324)
T ss_dssp EEEECCS-EEHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECS
T ss_pred EEecccc-cCHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEcc
Confidence 9999996 5898888532 23589999999999999999999999 999999999999999999999999
Q ss_pred cccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC--
Q 043900 790 FGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL-- 866 (953)
Q Consensus 790 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~-- 866 (953)
||+++..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ ..........
T Consensus 144 fg~a~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~ 220 (324)
T 3mtl_A 144 FGLARAKSIP--TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFRILGTP 220 (324)
T ss_dssp SSEEECC--------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCC
T ss_pred CcccccccCC--ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCC
Confidence 9999865322 222234468999999999876 568999999999999999999999997643221 1111111111
Q ss_pred -CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 -PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+..+...... .......................++++.+++.+||+.||++|||++|+++
T Consensus 221 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 221 TEETWPGILSN-----EEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp CTTTSTTGGGC-----HHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ChHhchhhhcc-----hhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 1111111000 00000000000000001111234567889999999999999999999987
No 196
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=8.5e-39 Score=352.97 Aligned_cols=246 Identities=26% Similarity=0.332 Sum_probs=197.0
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
+.|+..+.||+|+||+||+|++..+++.||||++.... ....+.+.+|++++++++||||++++++|.. ...
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCe
Confidence 45888999999999999999998888999999997432 3345678999999999999999999999643 378
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||++ |++.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 129 ~~lv~e~~~-g~l~~~l~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL 195 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEVH---------KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKL 195 (348)
T ss_dssp EEEEEECCS-EEHHHHHHHH---------TSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEE
T ss_pred EEEEEecCC-CCHHHHHHHh---------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEE
Confidence 899999996 6888877422 23689999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccC---CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL---GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+|||+++.... .....||+.|+|||++. +..++.++|||||||++|||++|+.||........ .......
T Consensus 196 ~DfG~a~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~-~~~~~~~ 268 (348)
T 1u5q_A 196 GDFGSASIMAP------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA-LYHIAQN 268 (348)
T ss_dssp CCCTTCBSSSS------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHS
T ss_pred eeccCceecCC------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHhc
Confidence 99999986532 12346999999999874 56789999999999999999999999975321110 0111100
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. +.... ..+++.+.+++.+||+.||++|||++|+++
T Consensus 269 ~~---------~~~~~---------------------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 269 ES---------PALQS---------------------GHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp CC---------CCCCC---------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CC---------CCCCC---------------------CCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 00 00000 022456889999999999999999999975
No 197
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=3.8e-39 Score=346.81 Aligned_cols=257 Identities=23% Similarity=0.350 Sum_probs=206.6
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc------
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY------ 702 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------ 702 (953)
...+|++.+.||+|+||.||+|++..+++.||+|+++... ..+.+|++++++++||||+++++++....+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3457999999999999999999999888899999997543 346789999999999999999998754211
Q ss_pred -----CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCe
Q 043900 703 -----QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNV 777 (953)
Q Consensus 703 -----~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 777 (953)
......++||||+++|+|.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Ni 153 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR--------GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNI 153 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGG--------GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhcc--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHE
Confidence 12355799999999999999996332 23689999999999999999999999 999999999999
Q ss_pred EecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 778 LLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 778 ll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
+++.++.+||+|||.+....... ......||+.|+|||++.+..++.++||||||+++|||++|..||...
T Consensus 154 l~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~------ 224 (284)
T 2a19_B 154 FLVDTKQVKIGDFGLVTSLKNDG---KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET------ 224 (284)
T ss_dssp EEEETTEEEECCCTTCEESSCCS---CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH------
T ss_pred EEcCCCCEEECcchhheeccccc---cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH------
Confidence 99999999999999998775432 223345899999999999999999999999999999999999886421
Q ss_pred HHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHH
Q 043900 858 LHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIK 937 (953)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~ 937 (953)
..... ...+..... ..+.++.+++.+||+.||++|||+.|+++.|+.++
T Consensus 225 -~~~~~--------~~~~~~~~~----------------------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~ 273 (284)
T 2a19_B 225 -SKFFT--------DLRDGIISD----------------------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK 273 (284)
T ss_dssp -HHHHH--------HHHTTCCCT----------------------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred -HHHHH--------Hhhcccccc----------------------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 00000 000000000 12345789999999999999999999999999887
Q ss_pred HHh
Q 043900 938 NIL 940 (953)
Q Consensus 938 ~~~ 940 (953)
+..
T Consensus 274 ~~~ 276 (284)
T 2a19_B 274 KSP 276 (284)
T ss_dssp C--
T ss_pred hCC
Confidence 553
No 198
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-37 Score=355.71 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=121.1
Q ss_pred cCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccce
Q 043900 25 GNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEH 104 (953)
Q Consensus 25 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (953)
..+++|++|++++|.++. +| .+..+++|++|+|++|.+++. |. +.++++|++|++++|.+++..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346677888888888776 44 377777888888888887743 33 7777788888888877774433 777777778
Q ss_pred eeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccc
Q 043900 105 LSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQL 184 (953)
Q Consensus 105 L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 184 (953)
|++++|++++. + .++++++|++|++++|++++ ++ .+..+++|++|+++ |.+.+.. .+.++++|+.|++++|++
T Consensus 117 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDI-D-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 88877777743 3 27777777777777777763 33 37777777777775 4444222 266666666666666666
Q ss_pred ccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEccccccc
Q 043900 185 QGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLT 234 (953)
Q Consensus 185 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (953)
++. + . +..+++|++|++++|++++..+ ++.+++|+.|++++|+++
T Consensus 190 ~~~-~-~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 190 SDI-S-V-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CCC-G-G-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCC-h-h-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 532 1 1 2245555555555555553322 344444444444444443
No 199
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.2e-38 Score=357.60 Aligned_cols=251 Identities=22% Similarity=0.361 Sum_probs=192.2
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcC--CCCeeEEEeeecccccCCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIR--HRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~~~ 706 (953)
++|++.+.||+|+||.||+|.+.. ++.||||++... .....+.+.+|+.++++++ ||||+++++++.. .+
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-----~~ 129 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-----DQ 129 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SS
T ss_pred CceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-----CC
Confidence 459999999999999999999876 568999999643 3445678899999999996 5999999999643 36
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||| +.+++|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+|||++ ++.+|
T Consensus 130 ~~~lv~E-~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~k 194 (390)
T 2zmd_A 130 YIYMVME-CGNIDLNSWLKK----------KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLK 194 (390)
T ss_dssp EEEEEEE-CCSEEHHHHHHH----------CSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEE
T ss_pred EEEEEEe-cCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEE
Confidence 7999999 568899999953 23578889999999999999999999 999999999999995 58899
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCC-----------CCCCcccchHHHHHHHHHHHhCCCCCCCcccCC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-----------SEVSINGDVYSYGILLLELVTRKKPVDSMFEGD 855 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~ 855 (953)
|+|||+++.+.............||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 195 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~ 274 (390)
T 2zmd_A 195 LIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 274 (390)
T ss_dssp ECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH
T ss_pred EEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH
Confidence 999999987654333333345579999999999865 468899999999999999999999997532211
Q ss_pred ccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 856 MNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
..+. .+++........ ...+.++.+++.+||+.||++|||+.|+++.
T Consensus 275 ~~~~------------~~~~~~~~~~~~------------------~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 275 SKLH------------AIIDPNHEIEFP------------------DIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp HHHH------------HHHCTTSCCCCC------------------CCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHH------------HHhCccccCCCC------------------ccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 1111 111111000000 0113458899999999999999999999863
No 200
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=3.5e-39 Score=358.10 Aligned_cols=250 Identities=24% Similarity=0.259 Sum_probs=191.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHH-HhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNT-LKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|+++.+++.||+|+++... ......+.+|..+ ++.++||||+++++++. ..
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~-----~~ 111 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ-----TA 111 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEE-----CS
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEE-----eC
Confidence 457999999999999999999999999999999997432 2234556677776 56789999999999854 44
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..++||||+++|+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+
T Consensus 112 ~~~~lv~E~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~i 178 (373)
T 2r5t_A 112 DKLYFVLDYINGGELFYHLQR----------ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHI 178 (373)
T ss_dssp SEEEEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred CEEEEEEeCCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCE
Confidence 789999999999999999852 23588999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+++..... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....
T Consensus 179 kL~DFG~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-----~~~~~- 250 (373)
T 2r5t_A 179 VLTDFGLCKENIEH--NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA-----EMYDN- 250 (373)
T ss_dssp EECCCCBCGGGBCC--CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH-----HHHHH-
T ss_pred EEeeCccccccccC--CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH-----HHHHH-
Confidence 99999999864322 12233456999999999999999999999999999999999999999752211 11110
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
+......- +...+.++.+++.+||+.||++||++.+.++.
T Consensus 251 -------i~~~~~~~--------------------~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ 290 (373)
T 2r5t_A 251 -------ILNKPLQL--------------------KPNITNSARHLLEGLLQKDRTKRLGAKDDFME 290 (373)
T ss_dssp -------HHHSCCCC--------------------CSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred -------HHhcccCC--------------------CCCCCHHHHHHHHHHcccCHHhCCCCCCCHHH
Confidence 00000000 00223568899999999999999998644433
No 201
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=5e-38 Score=350.95 Aligned_cols=282 Identities=19% Similarity=0.181 Sum_probs=197.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc-cCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD-YQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 706 (953)
.++|++.+.||+|+||.||+|.+..+++.||||++... .....+.+.+|+.+++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46899999999999999999999998999999999742 3345577889999999999999999999975432 22334
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||++ |+|.+++. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 104 ~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~k 167 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ------------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLK 167 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEE
T ss_pred ceEEEEEcCC-CCHHHHHh------------hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEE
Confidence 7899999996 57888773 2488999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .+..... ..
T Consensus 168 l~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~-~~ 242 (371)
T 2xrw_A 168 ILDFGLARTAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIE-QL 242 (371)
T ss_dssp ECCCCC-------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC--C
T ss_pred EEEeecccccccc---cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-Hh
Confidence 9999999865422 12234568999999999999999999999999999999999999997532211 1111111 00
Q ss_pred Cchhhh-----------hccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 867 PDHVVD-----------IVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 867 ~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
.....+ ......................+.........+.++.+++.+||+.||++|||++|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 243 GTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp CCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred CCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 000000 000000000000000000000000111223456789999999999999999999999873
No 202
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=356.78 Aligned_cols=270 Identities=15% Similarity=0.136 Sum_probs=206.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcC--------CCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeE---------
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQ--------GKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVK--------- 692 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~--------- 692 (953)
.++|++.+.||+|+||.||+|++.. .++.||+|+++.. +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3579999999999999999999987 3678999998743 45788999999999999988
Q ss_pred ------EEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043900 693 ------ILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP 766 (953)
Q Consensus 693 ------~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ 766 (953)
+++++. ..+...++||||+ +++|.+++.... ...+++.+++.++.||+.||+|||+. +
T Consensus 116 ~~~i~~~~~~~~----~~~~~~~lv~e~~-~~~L~~~l~~~~--------~~~l~~~~~~~i~~qi~~~L~~LH~~---~ 179 (352)
T 2jii_A 116 LLAIPTCMGFGV----HQDKYRFLVLPSL-GRSLQSALDVSP--------KHVLSERSVLQVACRLLDALEFLHEN---E 179 (352)
T ss_dssp TCSCCCCCEEEE----ETTTEEEEEEECC-CEEHHHHHHHSG--------GGCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ccCccchhhccc----cCCcEEEEEecCC-CcCHHHHHHhCC--------cCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 344432 2357889999999 999999996432 23689999999999999999999999 9
Q ss_pred eEeecCCCCCeEecCCC--cEEEeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHH
Q 043900 767 ITHCDLKPSNVLLDEEM--MAHVSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLL 839 (953)
Q Consensus 767 ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ 839 (953)
|+||||||+||+++.++ .+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|
T Consensus 180 ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ 259 (352)
T 2jii_A 180 YVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCML 259 (352)
T ss_dssp CBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence 99999999999999998 9999999999876432211 1123346999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCC
Q 043900 840 ELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMES 919 (953)
Q Consensus 840 elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~d 919 (953)
||++|+.||................. ........+... .....+.++.+++.+||+.|
T Consensus 260 el~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~l~~li~~~l~~d 317 (352)
T 2jii_A 260 KWLYGFLPWTNCLPNTEDIMKQKQKF-VDKPGPFVGPCG---------------------HWIRPSETLQKYLKVVMALT 317 (352)
T ss_dssp HHHHSCCTTGGGTTCHHHHHHHHHHH-HHSCCCEECTTS---------------------CEECCCHHHHHHHHHHHTCC
T ss_pred HHHhCCCCcccCCcCHHHHHHHHHhc-cCChhhhhhhcc---------------------ccCCCcHHHHHHHHHHHhCC
Confidence 99999999986432221111111110 000000000000 00012456899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Q 043900 920 PGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 920 P~~RPt~~evl~~L~~i~~~~~~ 942 (953)
|++|||++|+++.|+++.+....
T Consensus 318 p~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 318 YEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTTC
T ss_pred hhhCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999877543
No 203
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2.5e-38 Score=351.38 Aligned_cols=285 Identities=21% Similarity=0.301 Sum_probs=203.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc---CC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY---QG 704 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~---~~ 704 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|++++++++||||+++++++..... ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 467999999999999999999999888899999985332 2335678899999999999999999999765321 11
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++ ++.+.+... ...+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~---------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~ 162 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNV---------LVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGV 162 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCT---------TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred CceEEEEEeccCC-CHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCC
Confidence 4578999999975 777776422 23589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCC--cccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHH
Q 043900 785 AHVSDFGLARFLPLSPA--QTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~ 861 (953)
+||+|||+++.+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+. ....
T Consensus 163 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i 241 (351)
T 3mi9_A 163 LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQ-LALI 241 (351)
T ss_dssp EEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHH
T ss_pred EEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHH
Confidence 99999999987653221 222344568999999999876 4589999999999999999999999976332211 1111
Q ss_pred HHh--hCCchhhhhcc-ccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 862 ARM--ALPDHVVDIVD-STLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 862 ~~~--~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... ..+.......+ ........ ..................++++.+++.+||+.||++|||++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 242 SQLCGSITPEVWPNVDNYELYEKLE---LVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp HHHHCCCCTTTSTTGGGCGGGTSSC---CCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHhCCCChhhccccccchhhcccc---cccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 111 11111111000 00000000 000000000000011112456889999999999999999999986
No 204
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=6.4e-39 Score=352.21 Aligned_cols=277 Identities=23% Similarity=0.320 Sum_probs=194.9
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
...++|++.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++. .+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 105 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH-----HN 105 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----ET
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----cC
Confidence 45678999999999999999999999999999999996433 223456789999999999999999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec-----
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD----- 780 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~----- 780 (953)
...++||||++ |+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+||+++
T Consensus 106 ~~~~lv~e~~~-~~L~~~~~~----------~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~ 171 (329)
T 3gbz_A 106 HRLHLIFEYAE-NDLKKYMDK----------NPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDAS 171 (329)
T ss_dssp TEEEEEEECCS-EEHHHHHHH----------CTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC----
T ss_pred CEEEEEEecCC-CCHHHHHhh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCC
Confidence 78999999997 599999852 23589999999999999999999999 999999999999994
Q ss_pred CCCcEEEeccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHH
Q 043900 781 EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLH 859 (953)
Q Consensus 781 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~ 859 (953)
.++.+||+|||+++..... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||......+....
T Consensus 172 ~~~~~kl~Dfg~a~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~ 249 (329)
T 3gbz_A 172 ETPVLKIGDFGLARAFGIP--IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFK 249 (329)
T ss_dssp -CCEEEECCTTHHHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred ccceEEECcCCCccccCCc--ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHH
Confidence 5556999999999876422 1223344689999999998875 489999999999999999999999976432221111
Q ss_pred HHHHhhCCch--hhhhcc-ccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 860 NFARMALPDH--VVDIVD-STLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 860 ~~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.......+.. ...... +........ ..............++++.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 250 IFEVLGLPDDTTWPGVTALPDWKQSFPK------FRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHCCCCTTTSTTGGGSTTCCTTCCC------CCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHhCCCchhhhhhhhhhhhhhhhhhh------hccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 1111111111 000000 000000000 00000000011124567899999999999999999999975
No 205
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=3.8e-39 Score=369.28 Aligned_cols=249 Identities=19% Similarity=0.243 Sum_probs=192.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|.+..+++.||+|+++.. .......+.+|+.+++.++||||++++++|.. .+
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-----~~ 221 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HD 221 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-----TT
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-----CC
Confidence 46799999999999999999999999999999999742 33345677889999999999999999999643 36
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhh-CCCCCeEeecCCCCCeEecCCCcE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHH-DCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
..++||||+++|+|.+++.. ...+++..+..++.||+.||+|||+ . ||+||||||+|||++.++.+
T Consensus 222 ~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~ 288 (446)
T 4ejn_A 222 RLCFVMEYANGGELFFHLSR----------ERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHI 288 (446)
T ss_dssp EEEEEECCCSSCBHHHHHHH----------HSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCE
T ss_pred EEEEEEeeCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCE
Confidence 79999999999999999852 2368999999999999999999998 7 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+|+..... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... ......
T Consensus 289 kl~DFG~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-----~~~~~i 361 (446)
T 4ejn_A 289 KITDFGLCKEGIKD--GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-----KLFELI 361 (446)
T ss_dssp EECCCCCCCTTCC-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHH
T ss_pred EEccCCCceeccCC--CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH-----HHHHHH
Confidence 99999999854322 22233467999999999999999999999999999999999999999753211 111100
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-----CHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-----NMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~evl~ 931 (953)
. .... . .+...++++.+++.+||+.||++|| +++|+++
T Consensus 362 ~--------~~~~-~-------------------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 362 L--------MEEI-R-------------------FPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp H--------HCCC-C-------------------CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred H--------hCCC-C-------------------CCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 0 0000 0 0002345688999999999999999 9999986
No 206
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=2.7e-38 Score=361.72 Aligned_cols=264 Identities=20% Similarity=0.285 Sum_probs=206.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCC-eeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRN-LVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+|+++++.++|++ +..+..++ ...+..
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~-----~~~~~~ 78 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFG-----VEGDYN 78 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEE-----EETTEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEE-----eeCCEE
Confidence 4689999999999999999999988888999999864432 245788999999997744 44444442 234678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCCcE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEMMA 785 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~ 785 (953)
++||||+ +++|.+++... ...+++.+++.|+.||+.||+|||+. +|+||||||+|||+ +.++.+
T Consensus 79 ~lvme~~-g~sL~~ll~~~---------~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~v 145 (483)
T 3sv0_A 79 VLVMDLL-GPSLEDLFNFC---------SRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQV 145 (483)
T ss_dssp EEEEECC-CCBHHHHHHHT---------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCE
T ss_pred EEEEECC-CCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeE
Confidence 9999999 99999999632 23589999999999999999999999 99999999999999 688899
Q ss_pred EEeccccceecCCCCCc-----ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCc--cH
Q 043900 786 HVSDFGLARFLPLSPAQ-----TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDM--NL 858 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~--~~ 858 (953)
||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .+
T Consensus 146 kL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~ 225 (483)
T 3sv0_A 146 YIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKY 225 (483)
T ss_dssp EECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHH
T ss_pred EEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHH
Confidence 99999999887543322 122245699999999999999999999999999999999999999986433211 11
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKN 938 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~ 938 (953)
............. .....++.++.+++.+||+.||++||++++|++.|+++..
T Consensus 226 ~~i~~~~~~~~~~---------------------------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 226 EKISEKKVATSIE---------------------------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp HHHHHHHHHSCHH---------------------------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhhccccccHH---------------------------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 1111110000000 0011335679999999999999999999999999999876
Q ss_pred Hh
Q 043900 939 IL 940 (953)
Q Consensus 939 ~~ 940 (953)
..
T Consensus 279 ~~ 280 (483)
T 3sv0_A 279 RE 280 (483)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 207
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=5e-39 Score=344.83 Aligned_cols=258 Identities=21% Similarity=0.266 Sum_probs=203.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++.. .....+.+.+|++++++++||||+++++++.. ..+..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---GGGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCCce
Confidence 46799999999999999999999988889999999743 34456788999999999999999999998642 23367
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC-----eEeecCCCCCeEecCC
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP-----ITHCDLKPSNVLLDEE 782 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivH~Dlkp~NIll~~~ 782 (953)
.++||||+++++|.+++..... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.+
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~ 152 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKGTK------ERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGK 152 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSS
T ss_pred EEEEEeCCCCCCHHHHHHhhcc------cCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCC
Confidence 8999999999999999964321 123589999999999999999999998 7 9999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
+.+||+|||.++...... .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... ......
T Consensus 153 ~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i 228 (279)
T 2w5a_A 153 QNVKLGDFGLARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKI 228 (279)
T ss_dssp SCEEECCCCHHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH
T ss_pred CCEEEecCchheeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHH
Confidence 999999999998654321 1222345899999999999999999999999999999999999999753211 111111
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQL 933 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L 933 (953)
...... .+ +..++.++.+++.+||+.||++|||++|+++.+
T Consensus 229 ~~~~~~--------~~----------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 229 REGKFR--------RI----------------------PYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHTCCC--------CC----------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred hhcccc--------cC----------------------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 100000 00 002345688999999999999999999999754
No 208
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=342.71 Aligned_cols=253 Identities=22% Similarity=0.289 Sum_probs=197.3
Q ss_pred CCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeEE
Q 043900 632 GFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKALV 711 (953)
Q Consensus 632 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 711 (953)
+|.....||+|+||.||+|++..+++.||+|+++.......+.+.+|+.+++.++||||+++++++.. .+..++|
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv 97 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-----NGFIKIF 97 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-----CCcEEEE
Confidence 34555689999999999999998889999999987666667889999999999999999999999643 3678999
Q ss_pred EeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC-CCcEEEecc
Q 043900 712 FEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE-EMMAHVSDF 790 (953)
Q Consensus 712 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-~~~~kL~Df 790 (953)
|||+++++|.+++..... ...+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+||
T Consensus 98 ~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Df 167 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWG-------PLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDF 167 (295)
T ss_dssp EECCSEEEHHHHHHHTTC-------CCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCT
T ss_pred EEeCCCCCHHHHHHhhcc-------CCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeec
Confidence 999999999999964321 23567889999999999999999999 9999999999999987 899999999
Q ss_pred ccceecCCCCCcccccccccccccccccccCCCC--CCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCc
Q 043900 791 GLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE--VSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 791 G~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
|.++...... .......|++.|+|||++.+.. ++.++||||||+++|||++|+.||..................
T Consensus 168 g~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~-- 243 (295)
T 2clq_A 168 GTSKRLAGIN--PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKV-- 243 (295)
T ss_dssp TTCEESCC-------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCC--
T ss_pred ccccccCCCC--CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccc--
Confidence 9998764321 1223446899999999987653 789999999999999999999999643221111100000000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.+.. +..+++++.+++.+||+.||++|||++|+++
T Consensus 244 ------~~~~----------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 244 ------HPEI----------------------PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ------CCCC----------------------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ------cccc----------------------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0000 0123456889999999999999999999975
No 209
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=375.56 Aligned_cols=260 Identities=23% Similarity=0.375 Sum_probs=202.8
Q ss_pred CcccC-cccccceeeEEEEEEc--CCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 633 FASAN-EIGVGSFGSVYKGILD--QGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 633 ~~~~~-~ig~G~~g~Vy~~~~~--~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
+.+.+ .||+|+||.||+|.+. .++..||||+++.. .....+.+.+|++++++++||||++++++|.. +..
T Consensus 337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~~ 410 (613)
T 2ozo_A 337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EAL 410 (613)
T ss_dssp EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SSE
T ss_pred eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CCe
Confidence 33444 7999999999999886 34567999999754 33456789999999999999999999999742 458
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++|+|.+++... ...+++.+++.++.||+.||+|||+. +|+||||||+|||++.++.+||+
T Consensus 411 ~lv~E~~~~g~L~~~l~~~---------~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~ 478 (613)
T 2ozo_A 411 MLVMEMAGGGPLHKFLVGK---------REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKIS 478 (613)
T ss_dssp EEEEECCTTCBHHHHHTTC---------TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEEC
T ss_pred EEEEEeCCCCcHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEe
Confidence 9999999999999999532 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhC
Q 043900 789 DFGLARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 789 DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|||+++........ .......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+ .........
T Consensus 479 DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~~ 556 (613)
T 2ozo_A 479 DFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--VMAFIEQGK 556 (613)
T ss_dssp CCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH--HHHHHHTTC
T ss_pred eccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcCC
Confidence 99999876432211 11222346789999999998999999999999999999998 999997632211 111111000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcc
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLG 942 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~ 942 (953)
+...+..+++++.+++.+||+.||++||++.+|++.|+.+......
T Consensus 557 ------------------------------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~ 602 (613)
T 2ozo_A 557 ------------------------------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602 (613)
T ss_dssp ------------------------------CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred ------------------------------CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence 0001113456799999999999999999999999999998766544
No 210
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1.2e-38 Score=350.65 Aligned_cols=253 Identities=20% Similarity=0.272 Sum_probs=198.0
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 707 (953)
..++|++.+.||+|+||.||+|.++.+++.||+|+++.... ...+|++++.++ +||||+++++++. ++..
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~-----~~~~ 90 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYD-----DGKY 90 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEE-----CSSE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEE-----cCCE
Confidence 35679999999999999999999999999999999975432 234688888888 7999999999954 4578
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC----C
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE----M 783 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~----~ 783 (953)
.++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+. ||+||||||+||++.++ +
T Consensus 91 ~~lv~E~~~gg~L~~~i~~----------~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~ 157 (342)
T 2qr7_A 91 VYVVTELMKGGELLDKILR----------QKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPE 157 (342)
T ss_dssp EEEEECCCCSCBHHHHHHT----------CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGG
T ss_pred EEEEEeCCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcC
Confidence 9999999999999999852 23589999999999999999999999 99999999999998533 3
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
.+||+|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .......
T Consensus 158 ~~kl~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~~~ 233 (342)
T 2qr7_A 158 SIRICDFGFAKQLRAEN--GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEILA 233 (342)
T ss_dssp GEEECCCTTCEECBCTT--CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHHHH
T ss_pred eEEEEECCCcccCcCCC--CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHHHH
Confidence 59999999998764332 2223456899999999998888999999999999999999999999753221 1111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... ........ ......++++.+++.+||+.||++|||+.|+++
T Consensus 234 ~i~--------~~~~~~~~----------------~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 234 RIG--------SGKFSLSG----------------GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp HHH--------HCCCCCCS----------------TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHc--------cCCcccCc----------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 100 00000000 000123456889999999999999999999886
No 211
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2.8e-38 Score=364.60 Aligned_cols=252 Identities=22% Similarity=0.313 Sum_probs=201.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|.+.+.||+|+||.||+|++..+++.||+|+++... ......+.+|++++++++||||+++++++. ...
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~-----~~~ 258 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFE-----TKT 258 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----eCC
Confidence 357889999999999999999999888999999996432 234567889999999999999999999854 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++..... ....+++..++.++.||+.||+|||+. +|+||||||+|||++.++.+|
T Consensus 259 ~l~lVmE~~~gg~L~~~l~~~~~------~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vk 329 (543)
T 3c4z_A 259 DLCLVMTIMNGGDIRYHIYNVDE------DNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVR 329 (543)
T ss_dssp EEEEEECCCTTCBHHHHHHTSST------TSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEE
T ss_pred EEEEEEEeccCCCHHHHHHHhhc------ccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEE
Confidence 89999999999999999864332 134689999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||+++.+..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..........
T Consensus 330 L~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~~i~ 406 (543)
T 3c4z_A 330 ISDLGLAVELKAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRVL 406 (543)
T ss_dssp ECCCTTCEECCTTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHHHHH
T ss_pred EeecceeeeccCCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHHHHh
Confidence 999999987653322 2233579999999999999999999999999999999999999997642211 1111111110
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
.... . .+...+.++.+++.+||+.||++||++
T Consensus 407 --------~~~~-~-------------------~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 407 --------EQAV-T-------------------YPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp --------HCCC-C-------------------CCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred --------hccc-C-------------------CCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 0000 0 001234568899999999999999975
No 212
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.1e-38 Score=350.88 Aligned_cols=278 Identities=22% Similarity=0.297 Sum_probs=200.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||++++++|.. ...
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----KKR 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----CCE
Confidence 467999999999999999999999988899999986433 3335668899999999999999999999643 477
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++++|.++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 99 ~~lv~e~~~~~~l~~~~~~----------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl 165 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELF----------PNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKL 165 (331)
T ss_dssp EEEEEECCSEEHHHHHHHS----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEE
T ss_pred EEEEEecCCcchHHHHHhh----------ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEE
Confidence 8999999999999887642 23589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh-
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA- 865 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~- 865 (953)
+|||.++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||......+. ........
T Consensus 166 ~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~ 242 (331)
T 4aaa_A 166 CDFGFARTLAAPG--EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQ-LYHIMMCLG 242 (331)
T ss_dssp CCCTTC--------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHC
T ss_pred EeCCCceeecCCc--cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhC
Confidence 9999998654322 222345689999999998875 789999999999999999999999976432211 11111110
Q ss_pred -CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 -LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
............-....... ...............+++++.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 243 NLIPRHQELFNKNPVFAGVRL---PEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp SCCHHHHHHHHHCGGGTTCCC---CCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCChhhhhHhhhccccccccC---ccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 01111110000000000000 0000000000111134667999999999999999999999986
No 213
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.4e-38 Score=339.13 Aligned_cols=259 Identities=20% Similarity=0.280 Sum_probs=204.3
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch------hhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH------GAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
++|++.+.||+|+||.||+|++..+++.||+|+++.... ...+.+.+|+.++++++||||+++++++. .
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~ 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE-----N 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----C
Confidence 568999999999999999999998888999999964321 13578899999999999999999999964 3
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC-
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM- 783 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~- 783 (953)
....++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +++||||||+||+++.++
T Consensus 80 ~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~ 146 (283)
T 3bhy_A 80 KTDVVLILELVSGGELFDFLAE----------KESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNV 146 (283)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSS
T ss_pred CCeEEEEEeecCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCC
Confidence 4778999999999999999952 23589999999999999999999999 999999999999998877
Q ss_pred ---cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHH
Q 043900 784 ---MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHN 860 (953)
Q Consensus 784 ---~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~ 860 (953)
.+||+|||.+....... ......|++.|+|||++.+..++.++||||||+++|||++|+.||......+ ....
T Consensus 147 ~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~ 222 (283)
T 3bhy_A 147 PNPRIKLIDFGIAHKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE-TLTN 222 (283)
T ss_dssp SSCCEEECCCTTCEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHH
T ss_pred CCCceEEEecccceeccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH-HHHH
Confidence 89999999998764322 2233458999999999999999999999999999999999999997532111 0000
Q ss_pred HHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH--HHHHHHH
Q 043900 861 FARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR--QLQSIKN 938 (953)
Q Consensus 861 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~--~L~~i~~ 938 (953)
..... . ... .......+..+.+++.+||+.||++|||++|+++ .++.++.
T Consensus 223 ~~~~~------------~-~~~---------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~ 274 (283)
T 3bhy_A 223 ISAVN------------Y-DFD---------------EEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR 274 (283)
T ss_dssp HHTTC------------C-CCC---------------HHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred hHhcc------------c-CCc---------------chhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence 00000 0 000 0001123456889999999999999999999998 4666654
Q ss_pred H
Q 043900 939 I 939 (953)
Q Consensus 939 ~ 939 (953)
.
T Consensus 275 ~ 275 (283)
T 3bhy_A 275 R 275 (283)
T ss_dssp C
T ss_pred H
Confidence 3
No 214
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.1e-38 Score=350.33 Aligned_cols=267 Identities=23% Similarity=0.366 Sum_probs=205.2
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEE--EEEEeecc-chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCC
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTV--AVKVFNLL-HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~v--avK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 706 (953)
++|++.+.||+|+||.||+|++..++..+ |+|+++.. .....+.+.+|+++++++ +||||+++++++.. .+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-----~~ 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RG 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-----TT
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee-----CC
Confidence 57899999999999999999998877655 99988642 333456789999999999 89999999999643 47
Q ss_pred ceeEEEeeccCCchhhccccCCcCCc------ccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDK------TEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD 780 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 780 (953)
..++||||+++|+|.+++........ .......+++.+++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~ 176 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG 176 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEc
Confidence 79999999999999999964431000 001234689999999999999999999999 999999999999999
Q ss_pred CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHH
Q 043900 781 EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLH 859 (953)
Q Consensus 781 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~ 859 (953)
.++.+||+|||+++.... ........+++.|+|||++.+..++.++|||||||++|||++ |+.||......
T Consensus 177 ~~~~~kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~----- 248 (327)
T 1fvr_A 177 ENYVAKIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA----- 248 (327)
T ss_dssp GGGCEEECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----
T ss_pred CCCeEEEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH-----
Confidence 999999999999974321 112223347889999999988889999999999999999998 99999753211
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
...... ...... .....+++++.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 249 ~~~~~~---------~~~~~~------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 249 ELYEKL---------PQGYRL------------------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp HHHHHG---------GGTCCC------------------CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHHHHh---------hcCCCC------------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 111100 000000 00012345688999999999999999999999999998765
Q ss_pred h
Q 043900 940 L 940 (953)
Q Consensus 940 ~ 940 (953)
.
T Consensus 302 ~ 302 (327)
T 1fvr_A 302 R 302 (327)
T ss_dssp S
T ss_pred h
Confidence 4
No 215
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=4.2e-38 Score=341.93 Aligned_cols=250 Identities=24% Similarity=0.332 Sum_probs=204.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.+.|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.++++++||||+++++++.. ....
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 95 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKL 95 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeE
Confidence 456999999999999999999999888899999997433 3456789999999999999999999999643 3678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 96 ~lv~e~~~~~~L~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 161 (303)
T 3a7i_A 96 WIIMEYLGGGSALDLLE-----------PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLA 161 (303)
T ss_dssp EEEEECCTTEEHHHHHT-----------TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred EEEEEeCCCCcHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEe
Confidence 99999999999999985 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCc
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
|||.+....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||....... .........+
T Consensus 162 Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~- 236 (303)
T 3a7i_A 162 DFGVAGQLTDTQ--IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK--VLFLIPKNNP- 236 (303)
T ss_dssp CCTTCEECBTTB--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCC-
T ss_pred ecccceecCccc--cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH--HHHHhhcCCC-
Confidence 999998764322 22234568999999999999999999999999999999999999997532111 1111100000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
.... ..++.++.+++.+||+.||++|||++|+++.
T Consensus 237 -------~~~~----------------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 237 -------PTLE----------------------GNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp -------CCCC----------------------SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred -------CCCc----------------------cccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 0000 0223568899999999999999999999874
No 216
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=2.6e-38 Score=351.79 Aligned_cols=287 Identities=20% Similarity=0.193 Sum_probs=205.8
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .......+.+|++++++++||||+++++++....+.....
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 356899999999999999999999988899999999643 3344567889999999999999999999976655556678
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||++ ++|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 89 ~~lv~e~~~-~~L~~~~~~-----------~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl 153 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVIST-----------QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKV 153 (353)
T ss_dssp EEEEECCCS-EEHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEE
T ss_pred EEEEEeccC-ccHHHHHhh-----------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEE
Confidence 999999996 699998852 3589999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCCcc--------cccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccH
Q 043900 788 SDFGLARFLPLSPAQT--------SSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNL 858 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~ 858 (953)
+|||+++......... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+. .
T Consensus 154 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~ 232 (353)
T 2b9h_A 154 CDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ-L 232 (353)
T ss_dssp CCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-H
T ss_pred EecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH-H
Confidence 9999998765322111 1223468999999998654 6789999999999999999999999976322111 1
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.........................+...................+++++.+++.+||+.||++|||++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 233 LLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp HHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 1111110000000000000000000000000000000000011134567899999999999999999999987
No 217
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2e-38 Score=342.93 Aligned_cols=250 Identities=20% Similarity=0.248 Sum_probs=204.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|.+.+.||+|+||.||+|.+..+++.||+|++... .....+.+.+|+.++++++||||+++++++. ..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~ 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----cCC
Confidence 46799999999999999999999998899999998643 3345677889999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 89 ~~~lv~e~~~~~~L~~~~~~----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~k 155 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHKR----------RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVK 155 (294)
T ss_dssp EEEEEEECCTTCBHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEE
T ss_pred EEEEEEecCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEE
Confidence 78999999999999998852 23689999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||.++....... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||......+ .....
T Consensus 156 l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-----~~~~~- 227 (294)
T 2rku_A 156 IGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-----TYLRI- 227 (294)
T ss_dssp ECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-----HHHHH-
T ss_pred EEeccCceecccCcc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-----HHHHH-
Confidence 999999987643222 2234568999999999999999999999999999999999999997532111 00000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
..... .. +...+.++.+++.+||+.||++|||++|+++.
T Consensus 228 -------~~~~~-~~-------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 228 -------KKNEY-SI-------------------PKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp -------HTTCC-CC-------------------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred -------hhccC-CC-------------------ccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 00000 00 00223468899999999999999999999874
No 218
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=1.6e-38 Score=354.51 Aligned_cols=280 Identities=19% Similarity=0.191 Sum_probs=202.3
Q ss_pred HHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-----------hhhHHHHHHHHHHHhhcCCCCee
Q 043900 623 YQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-----------HGAFKSFIAECNTLKNIRHRNLV 691 (953)
Q Consensus 623 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~e~~~l~~l~h~niv 691 (953)
..++....++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 45677788999999999999999999999877 5699999985322 12237889999999999999999
Q ss_pred EEEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeec
Q 043900 692 KILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCD 771 (953)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~D 771 (953)
++++++...........++||||++ |+|.+++... ...+++..+..++.||+.||+|||+. +|+|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~D 159 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ---------RIVISPQHIQYFMYHILLGLHVLHEA---GVVHRD 159 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT---------TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecC
Confidence 9999986543344567899999997 6888888522 23589999999999999999999999 999999
Q ss_pred CCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCC
Q 043900 772 LKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDS 850 (953)
Q Consensus 772 lkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~ 850 (953)
|||+||+++.++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..
T Consensus 160 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 236 (362)
T 3pg1_A 160 LHPGNILLADNNDITICDFNLAREDTAD---ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRG 236 (362)
T ss_dssp CCGGGEEECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CChHHEEEcCCCCEEEEecCcccccccc---cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999754322 22234568999999999877 6789999999999999999999999975
Q ss_pred cccCCccHHHHHHhhCCch-----------hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCC
Q 043900 851 MFEGDMNLHNFARMALPDH-----------VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMES 919 (953)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~d 919 (953)
....+ ............. ..+........... ..........++.+.+++.+||+.|
T Consensus 237 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~li~~~L~~d 304 (362)
T 3pg1_A 237 STFYN-QLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPA-----------RAWTAVVPTADPVALDLIAKMLEFN 304 (362)
T ss_dssp SSHHH-HHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCC-----------CCHHHHSTTSCHHHHHHHHHHTCSS
T ss_pred CCHHH-HHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCCh-----------hhHHhhCCCCCHHHHHHHHHHhcCC
Confidence 32211 1111111111111 11111111100000 0000111133567899999999999
Q ss_pred CCCCCCHHHHHH
Q 043900 920 PGDRMNMTNVVR 931 (953)
Q Consensus 920 P~~RPt~~evl~ 931 (953)
|++|||++|+++
T Consensus 305 P~~Rpt~~ell~ 316 (362)
T 3pg1_A 305 PQRRISTEQALR 316 (362)
T ss_dssp GGGSCCHHHHHT
T ss_pred hhhCCCHHHHHc
Confidence 999999999986
No 219
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2.5e-38 Score=343.82 Aligned_cols=251 Identities=21% Similarity=0.233 Sum_probs=199.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCcee
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
.++|.+.+.||+|+||.||+|++..+++.||+|+++.......+.+.+|+.++++++||||+++++++. .....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 82 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHYY 82 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEEE
Confidence 467999999999999999999999888899999998655545567889999999999999999999964 347889
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCCcEE
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEMMAH 786 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~k 786 (953)
+||||+++++|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+|
T Consensus 83 lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~k 149 (304)
T 2jam_A 83 LVMQLVSGGELFDRILE----------RGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIM 149 (304)
T ss_dssp EEECCCCSCBHHHHHHH----------HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEE
T ss_pred EEEEcCCCccHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEE
Confidence 99999999999998852 23588999999999999999999999 99999999999999 7888999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||.++..... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... ..........
T Consensus 150 l~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~ 223 (304)
T 2jam_A 150 ITDFGLSKMEQNG----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIKEGY 223 (304)
T ss_dssp BCSCSTTCCCCCB----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHCC
T ss_pred EccCCcceecCCC----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCC
Confidence 9999999754321 222345899999999999999999999999999999999999999753211 1111110000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ... ......++++.+++.+||+.||++|||++|+++
T Consensus 224 ~~----~~~-----------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 224 YE----FES-----------------------PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp CC----CCT-----------------------TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CC----CCc-----------------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00 000 000123456889999999999999999999986
No 220
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-38 Score=350.47 Aligned_cols=280 Identities=23% Similarity=0.273 Sum_probs=197.4
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch-----hhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH-----GAFKSFIAECNTLKNIRHRNLVKILTACSGVDY 702 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 702 (953)
...++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 82 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG---- 82 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe----
Confidence 446789999999999999999999998888999999964322 12346789999999999999999999964
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
.....++||||+++ +|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 83 -~~~~~~lv~e~~~~-~l~~~~~~~---------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~ 148 (346)
T 1ua2_A 83 -HKSNISLVFDFMET-DLEVIIKDN---------SLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDEN 148 (346)
T ss_dssp -CTTCCEEEEECCSE-EHHHHHTTC---------CSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTT
T ss_pred -eCCceEEEEEcCCC-CHHHHHHhc---------CcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCC
Confidence 44778999999975 888888532 23578889999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~ 861 (953)
+.+||+|||+++...... .......||+.|+|||++.+. .++.++|||||||++|||++|.+||.+....+ .+...
T Consensus 149 ~~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~-~~~~i 225 (346)
T 1ua2_A 149 GVLKLADFGLAKSFGSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRI 225 (346)
T ss_dssp CCEEECCCGGGSTTTSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHH
T ss_pred CCEEEEecccceeccCCc--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH-HHHHH
Confidence 999999999998764322 223345689999999998764 58999999999999999999999987532221 11111
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
...........+.+.....+... .. ..... .........+.++.+++.+||+.||++|||++|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 226 FETLGTPTEEQWPDMCSLPDYVT--FK-SFPGI-PLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp HHHHCCCCTTTSSSTTSSTTCCC--CC-CCCCC-CHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred HHHcCCCChhhhhhhccCccccc--cc-ccCCC-ChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 11111100000000000000000 00 00000 0000011335679999999999999999999999873
No 221
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.1e-38 Score=349.14 Aligned_cols=251 Identities=20% Similarity=0.269 Sum_probs=204.5
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
..++|.+.+.||+|+||.||+|++..+++.||+|++... .....+.+.+|+.++++++||||+++++++. +.
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 113 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DN 113 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CS
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cC
Confidence 346799999999999999999999999999999998643 3345677899999999999999999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
+..++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 114 ~~~~lv~e~~~~~~L~~~~~~----------~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~ 180 (335)
T 2owb_A 114 DFVFVVLELCRRRSLLELHKR----------RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEV 180 (335)
T ss_dssp SEEEEEECCCTTCBHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCE
T ss_pred CeEEEEEecCCCCCHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCE
Confidence 789999999999999998852 23689999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
||+|||+++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+ .........
T Consensus 181 kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~ 257 (335)
T 2owb_A 181 KIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-TYLRIKKNE 257 (335)
T ss_dssp EECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTC
T ss_pred EEeeccCceecccCcc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHhcCC
Confidence 9999999987643222 2234568999999999999999999999999999999999999997532111 000000000
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
. .. +..++.++.+++.+||+.||++|||++|+++.
T Consensus 258 ~----------~~----------------------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 258 Y----------SI----------------------PKHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp C----------CC----------------------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred C----------CC----------------------CccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0 00 00123468899999999999999999999873
No 222
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3.1e-38 Score=339.54 Aligned_cols=247 Identities=22% Similarity=0.291 Sum_probs=202.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|++++++++||||+++++++. ...
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DRK 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cCC
Confidence 357999999999999999999999988999999996432 223467899999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++|+|.+++.. ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~k 154 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQK----------HGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELK 154 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEE
T ss_pred EEEEEEEeCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEE
Confidence 88999999999999999853 23588999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+|||.+...... ......|++.|+|||++.+..++.++||||||+++|||++|+.||......+ ......
T Consensus 155 l~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-----~~~~~~ 225 (284)
T 2vgo_A 155 IADFGWSVHAPSL----RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE-----THRRIV 225 (284)
T ss_dssp ECCCTTCEECSSS----CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH-----HHHHHH
T ss_pred EecccccccCccc----ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH-----HHHHHh
Confidence 9999999765422 1233468999999999999999999999999999999999999997532111 000000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. +.... ...+.++.+++.+||+.||++|||++|+++
T Consensus 226 ~~------~~~~~----------------------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 226 NV------DLKFP----------------------PFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp TT------CCCCC----------------------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cc------ccCCC----------------------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 00 00000 022456889999999999999999999987
No 223
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.2e-38 Score=355.60 Aligned_cols=290 Identities=20% Similarity=0.219 Sum_probs=203.4
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-----
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY----- 702 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----- 702 (953)
...++|++.+.||+|+||.||+|++..+++.||+|++..... ...+|+++++.++||||+++++++.....
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 456789999999999999999999999889999999864322 22469999999999999999999754321
Q ss_pred ----------------------------CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHH
Q 043900 703 ----------------------------QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVAC 754 (953)
Q Consensus 703 ----------------------------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~ 754 (953)
......++||||++ |+|.+.+..... ....+++..+..++.||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~------~~~~l~~~~~~~i~~qi~~ 152 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIR------SGRSIPMNLISIYIYQLFR 152 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHH------TTCCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHh------cCCCCCHHHHHHHHHHHHH
Confidence 23455889999997 588777753221 1346899999999999999
Q ss_pred HHHHHhhCCCCCeEeecCCCCCeEec-CCCcEEEeccccceecCCCCCcccccccccccccccccccCCC-CCCcccchH
Q 043900 755 ALSYLHHDCQPPITHCDLKPSNVLLD-EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVY 832 (953)
Q Consensus 755 ~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~ 832 (953)
||+|||+. ||+||||||+||+++ .++.+||+|||+|+...... ......||+.|+|||++.+. .++.++|||
T Consensus 153 aL~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw 226 (383)
T 3eb0_A 153 AVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE---PSVAYICSRFYRAPELMLGATEYTPSIDLW 226 (383)
T ss_dssp HHHHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS---CCCCCCCCSSCCCHHHHTTCSSCCTHHHHH
T ss_pred HHHHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC---CCcCcccCCCccCHHHhcCCCCCCcchhhh
Confidence 99999999 999999999999998 68899999999998764332 22344689999999998775 489999999
Q ss_pred HHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHh
Q 043900 833 SYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIG 912 (953)
Q Consensus 833 slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 912 (953)
|+||++|||++|+.||.+....+ .+..............+... ........... ......+...+...+.++.+++
T Consensus 227 slG~il~ell~g~~pf~~~~~~~-~~~~i~~~~g~p~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li 302 (383)
T 3eb0_A 227 SIGCVFGELILGKPLFSGETSID-QLVRIIQIMGTPTKEQMIRM--NPHYTEVRFPT-LKAKDWRKILPEGTPSLAIDLL 302 (383)
T ss_dssp HHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHHHH--CTTC--CCCCC-CCCCCHHHHSCTTCCHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCHHHHHHh--CcccccccCCc-cCcccHHhhCCCCCCHHHHHHH
Confidence 99999999999999997633221 12222211111110000000 00000000000 0000000001112456789999
Q ss_pred hccccCCCCCCCCHHHHHH--HHHHHHH
Q 043900 913 VACSMESPGDRMNMTNVVR--QLQSIKN 938 (953)
Q Consensus 913 ~~cl~~dP~~RPt~~evl~--~L~~i~~ 938 (953)
.+||+.||++|||+.|+++ .+++++.
T Consensus 303 ~~~L~~dP~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 303 EQILRYEPDLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp HHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred HHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence 9999999999999999985 3555544
No 224
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=341.05 Aligned_cols=255 Identities=19% Similarity=0.289 Sum_probs=200.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc----hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH----HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
.++|++.+.||+|+||.||+|.+..+++.||+|+++... ......+.+|++++++++||||+++++++.. .+.
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 80 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EEK 80 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C--
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CCC
Confidence 468999999999999999999999888899999996432 2345788999999999999999999998642 334
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||++++ +.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 81 ~~~~lv~e~~~~~-l~~~~~~~~--------~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~ 148 (305)
T 2wtk_C 81 QKMYMVMEYCVCG-MQEMLDSVP--------EKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTL 148 (305)
T ss_dssp -CEEEEEECCSEE-HHHHHHHST--------TCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred CeEEEEehhccCC-HHHHHHhCc--------ccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcE
Confidence 6789999999876 666664322 23689999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCCCC--CCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE--VSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
||+|||.+................||+.|+|||++.+.. ++.++||||||+++|||++|+.||..... .....
T Consensus 149 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~ 223 (305)
T 2wtk_C 149 KISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI-----YKLFE 223 (305)
T ss_dssp EECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHH
T ss_pred EeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH-----HHHHH
Confidence 999999998775433333334556999999999987654 47899999999999999999999975211 11110
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
.. ..... . ....+++++.+++.+||+.||++|||++|+++.
T Consensus 224 ~i--------~~~~~-~-------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 224 NI--------GKGSY-A-------------------IPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HH--------HHCCC-C-------------------CCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HH--------hcCCC-C-------------------CCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00 00000 0 000234568899999999999999999999874
No 225
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=7e-38 Score=348.51 Aligned_cols=258 Identities=20% Similarity=0.282 Sum_probs=203.6
Q ss_pred HHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch--------hhHHHHHHHHHHHhhc-CCCCeeEEE
Q 043900 624 QNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH--------GAFKSFIAECNTLKNI-RHRNLVKIL 694 (953)
Q Consensus 624 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l-~h~niv~~~ 694 (953)
.......++|.+.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+.+++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 3344556789999999999999999999988888999999974331 2245678999999999 799999999
Q ss_pred eeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 695 TACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 695 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
+++. .....++||||+++++|.+++.. ...+++..+..++.||+.||+|||+. ||+||||||
T Consensus 167 ~~~~-----~~~~~~lv~e~~~g~~L~~~l~~----------~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp 228 (365)
T 2y7j_A 167 DSYE-----SSSFMFLVFDLMRKGELFDYLTE----------KVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKP 228 (365)
T ss_dssp EEEE-----BSSEEEEEECCCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred EEEe-----eCCEEEEEEEeCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCH
Confidence 9964 34789999999999999999852 23689999999999999999999999 999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCC------CCCCcccchHHHHHHHHHHHhCCCCC
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG------SEVSINGDVYSYGILLLELVTRKKPV 848 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~sDv~slG~vl~elltg~~pf 848 (953)
+||+++.++.+||+|||++..+.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||
T Consensus 229 ~NIl~~~~~~ikl~DfG~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf 305 (365)
T 2y7j_A 229 ENILLDDNMQIRLSDFGFSCHLEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPF 305 (365)
T ss_dssp GGEEECTTCCEEECCCTTCEECCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred HHEEECCCCCEEEEecCcccccCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCC
Confidence 99999999999999999998775332 2234569999999998753 36889999999999999999999999
Q ss_pred CCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHH
Q 043900 849 DSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTN 928 (953)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e 928 (953)
...... ......... ..... .......+.++.+++.+||+.||++|||++|
T Consensus 306 ~~~~~~--~~~~~i~~~-----------~~~~~----------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e 356 (365)
T 2y7j_A 306 WHRRQI--LMLRMIMEG-----------QYQFS----------------SPEWDDRSSTVKDLISRLLQVDPEARLTAEQ 356 (365)
T ss_dssp CCSSHH--HHHHHHHHT-----------CCCCC----------------HHHHSSSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCCHH--HHHHHHHhC-----------CCCCC----------------CcccccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence 652111 010000000 00000 0000123456889999999999999999999
Q ss_pred HHH
Q 043900 929 VVR 931 (953)
Q Consensus 929 vl~ 931 (953)
+++
T Consensus 357 ll~ 359 (365)
T 2y7j_A 357 ALQ 359 (365)
T ss_dssp HHH
T ss_pred Hhc
Confidence 986
No 226
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-37 Score=354.27 Aligned_cols=347 Identities=28% Similarity=0.426 Sum_probs=199.4
Q ss_pred CCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccE
Q 043900 49 DRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINT 128 (953)
Q Consensus 49 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~ 128 (953)
..+.+|+.|++++|.++ .+|. +..+++|++|+|++|.+++..| ++++++|++|++++|++++..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 44678889999999887 5664 7888899999999998885433 8888889999998888885544 888888888
Q ss_pred EecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCcc
Q 043900 129 LFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQ 208 (953)
Q Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 208 (953)
|++++|.+++..+ |..+++|++|++++|++++ ++ .+..+++|++|+++ |.+.+..+ +..+++|+.|++++|+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~---~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP---LANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG---GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh---hccCCCCCEEECcCCc
Confidence 8888888875433 8888888888888888873 33 36666666666664 33332221 2244455555555554
Q ss_pred ccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccc
Q 043900 209 LTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGG 288 (953)
Q Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~ 288 (953)
+++. ..+..+++|+.|++++|.+++.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~---------------------------------------------------- 214 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDI---------------------------------------------------- 214 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCC----------------------------------------------------
T ss_pred CCCC--hhhccCCCCCEEEecCCccccc----------------------------------------------------
Confidence 4421 1233444444444444433321
Q ss_pred cCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCC
Q 043900 289 LLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIG 368 (953)
Q Consensus 289 ~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 368 (953)
.| +..+ ++|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|++++
T Consensus 215 -~~--~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------- 279 (466)
T 1o6v_A 215 -TP--LGIL-TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN------- 279 (466)
T ss_dssp -GG--GGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-------
T ss_pred -cc--cccc-CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-------
Confidence 11 1111 3455555555554432 234445555555555555543322 4445555555555444442
Q ss_pred CceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCcccee
Q 043900 369 NLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVL 448 (953)
Q Consensus 369 ~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L 448 (953)
..+ +..+++|+.|+|++|++++. .+ +..+++|+.|
T Consensus 280 ----------------~~~--~~~l~~L~~L~L~~n~l~~~-------------------------~~--~~~l~~L~~L 314 (466)
T 1o6v_A 280 ----------------ISP--LAGLTALTNLELNENQLEDI-------------------------SP--ISNLKNLTYL 314 (466)
T ss_dssp ----------------CGG--GTTCTTCSEEECCSSCCSCC-------------------------GG--GGGCTTCSEE
T ss_pred ----------------ccc--ccCCCccCeEEcCCCcccCc-------------------------hh--hcCCCCCCEE
Confidence 111 44555555555555555421 11 3445555555
Q ss_pred eecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCc
Q 043900 449 DVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLE 528 (953)
Q Consensus 449 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 528 (953)
+|++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 555555554333 45555555555555555543 345555555555555555555444 455555555555555555
Q ss_pred c
Q 043900 529 G 529 (953)
Q Consensus 529 ~ 529 (953)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 5
No 227
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=350.03 Aligned_cols=270 Identities=23% Similarity=0.285 Sum_probs=201.5
Q ss_pred CCCCcCHHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEe
Q 043900 617 SFPNISYQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILT 695 (953)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~ 695 (953)
....+++.++....++|++.+.||+|+||.||+|++..+++.||+|++.... .....+.+|+.+++++ +||||+++++
T Consensus 10 ~~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~ 88 (326)
T 2x7f_A 10 SLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYG 88 (326)
T ss_dssp ------CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEE
T ss_pred cchhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeee
Confidence 3444555566667889999999999999999999998888899999997543 2456788999999999 8999999999
Q ss_pred eeccccc-CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCC
Q 043900 696 ACSGVDY-QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKP 774 (953)
Q Consensus 696 ~~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 774 (953)
++..... ......++||||+++|+|.+++.... ...+++..++.++.||+.||+|||+. +|+||||||
T Consensus 89 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp 157 (326)
T 2x7f_A 89 AFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTK--------GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKG 157 (326)
T ss_dssp EEEECC--CCCCEEEEEEECCTTEEHHHHHHHSG--------GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSG
T ss_pred EEeeccCccccceEEEEEEcCCCCcHHHHHHhcc--------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcH
Confidence 9754321 11467899999999999999996432 23688999999999999999999999 999999999
Q ss_pred CCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccC-----CCCCCcccchHHHHHHHHHHHhCCCCCC
Q 043900 775 SNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL-----GSEVSINGDVYSYGILLLELVTRKKPVD 849 (953)
Q Consensus 775 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDv~slG~vl~elltg~~pf~ 849 (953)
+||+++.++.+||+|||++....... .......||+.|+|||++. +..++.++|||||||++|||++|+.||.
T Consensus 158 ~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 235 (326)
T 2x7f_A 158 QNVLLTENAEVKLVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC 235 (326)
T ss_dssp GGEEECTTCCEEECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHEEEcCCCCEEEeeCcCceecCcCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999998654221 1223346899999999987 5678999999999999999999999996
Q ss_pred CcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHH
Q 043900 850 SMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNV 929 (953)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev 929 (953)
....... ......... +... ...++.++.+++.+||+.||++|||++|+
T Consensus 236 ~~~~~~~-~~~~~~~~~---------~~~~---------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l 284 (326)
T 2x7f_A 236 DMHPMRA-LFLIPRNPA---------PRLK---------------------SKKWSKKFQSFIESCLVKNHSQRPATEQL 284 (326)
T ss_dssp TSCHHHH-HHHHHHSCC---------CCCS---------------------CSCSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CCcHHHH-HHHhhcCcc---------ccCC---------------------ccccCHHHHHHHHHHhccChhhCCCHHHH
Confidence 5321110 000000000 0000 00124568899999999999999999999
Q ss_pred HH
Q 043900 930 VR 931 (953)
Q Consensus 930 l~ 931 (953)
++
T Consensus 285 l~ 286 (326)
T 2x7f_A 285 MK 286 (326)
T ss_dssp HT
T ss_pred hh
Confidence 87
No 228
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.2e-39 Score=363.00 Aligned_cols=260 Identities=13% Similarity=0.134 Sum_probs=195.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeec---cchhhHHHHHHHH---HHHhhcCCCCeeEEEeeecccc--
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNL---LHHGAFKSFIAEC---NTLKNIRHRNLVKILTACSGVD-- 701 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~---~~~~~~~~~~~e~---~~l~~l~h~niv~~~~~~~~~~-- 701 (953)
.++|++.+.||+|+||+||+|++..+++.||||+++. ......+.+.+|+ +.+++++||||+++++.+....
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 4678889999999999999999988888999999973 3344567889999 4555558999999984332100
Q ss_pred cCCC------------C-----ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCC
Q 043900 702 YQGN------------D-----FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQ 764 (953)
Q Consensus 702 ~~~~------------~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~ 764 (953)
+... + ..++||||+ +|+|.+++.....- ......+++..++.|+.||+.||+|||+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~---~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-- 225 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH---SSTHKSLVHHARLQLTLQVIRLLASLHHY-- 225 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcccc---ccccccccHHHHHHHHHHHHHHHHHHHhC--
Confidence 1111 1 378999999 68999999643211 11123466789999999999999999999
Q ss_pred CCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCC-----------CCCcccchHH
Q 043900 765 PPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-----------EVSINGDVYS 833 (953)
Q Consensus 765 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~sDv~s 833 (953)
+|+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++||||
T Consensus 226 -~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwS 298 (377)
T 3byv_A 226 -GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWA 298 (377)
T ss_dssp -TEECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHH
T ss_pred -CeecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHH
Confidence 999999999999999999999999999986422 2234457 999999999887 8999999999
Q ss_pred HHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhh
Q 043900 834 YGILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGV 913 (953)
Q Consensus 834 lG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 913 (953)
|||++|||++|+.||........ ...+.. .. ..+++++.+++.
T Consensus 299 lG~il~elltg~~Pf~~~~~~~~-------------~~~~~~-~~-----------------------~~~~~~~~~li~ 341 (377)
T 3byv_A 299 LGLVIYWIWCADLPITKDAALGG-------------SEWIFR-SC-----------------------KNIPQPVRALLE 341 (377)
T ss_dssp HHHHHHHHHHSSCCC------CC-------------SGGGGS-SC-----------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCcccccccc-------------hhhhhh-hc-----------------------cCCCHHHHHHHH
Confidence 99999999999999965321110 000000 00 022456889999
Q ss_pred ccccCCCCCCCCHHHHHH--HHHHHHHH
Q 043900 914 ACSMESPGDRMNMTNVVR--QLQSIKNI 939 (953)
Q Consensus 914 ~cl~~dP~~RPt~~evl~--~L~~i~~~ 939 (953)
+||+.||++|||+.|+++ .++++++.
T Consensus 342 ~~L~~dp~~Rpt~~e~l~hp~f~~~~~~ 369 (377)
T 3byv_A 342 GFLRYPKEDRLLPLQAMETPEYEQLRTE 369 (377)
T ss_dssp HHTCSSGGGCCCHHHHHTSHHHHHHHHH
T ss_pred HHcCCCchhCCCHHHHhhChHHHHHHHH
Confidence 999999999999999997 56666544
No 229
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=3.3e-38 Score=374.34 Aligned_cols=252 Identities=24% Similarity=0.362 Sum_probs=198.4
Q ss_pred CcccccceeeEEEEEEc--CCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCceeEEE
Q 043900 637 NEIGVGSFGSVYKGILD--QGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFKALVF 712 (953)
Q Consensus 637 ~~ig~G~~g~Vy~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~ 712 (953)
+.||+|+||.||+|.+. ..++.||||+++... ....+.+.+|++++++++||||++++++|.. +..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~------~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------CCEEEEE
Confidence 47999999999999664 455789999997432 3346789999999999999999999999732 4578999
Q ss_pred eeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEecccc
Q 043900 713 EFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGL 792 (953)
Q Consensus 713 e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 792 (953)
||+++|+|.+++.. ...+++.+++.|+.||+.||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 449 E~~~~g~L~~~l~~----------~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGl 515 (635)
T 4fl3_A 449 EMAELGPLNKYLQQ----------NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGL 515 (635)
T ss_dssp ECCTTEEHHHHHHH----------CTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTH
T ss_pred EccCCCCHHHHHhh----------CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCC
Confidence 99999999999952 23589999999999999999999999 999999999999999999999999999
Q ss_pred ceecCCCCCc-ccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCCchh
Q 043900 793 ARFLPLSPAQ-TSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALPDHV 870 (953)
Q Consensus 793 a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~ 870 (953)
|+.+...... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+ ........
T Consensus 516 a~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~----- 588 (635)
T 4fl3_A 516 SKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE--VTAMLEKG----- 588 (635)
T ss_dssp HHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTT-----
T ss_pred ccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC-----
Confidence 9876543221 22233457889999999999999999999999999999998 999997532211 11111100
Q ss_pred hhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 871 VDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 871 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.. ...+..+++++.+++.+||+.||++|||+++|++.|+++-..
T Consensus 589 -------~~------------------~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 589 -------ER------------------MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp -------CC------------------CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred -------CC------------------CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 00 000113456799999999999999999999999999988654
No 230
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=8e-39 Score=373.72 Aligned_cols=259 Identities=27% Similarity=0.445 Sum_probs=206.7
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|++..+ ..||||+++.... ..+.+.+|++++++++||||++++++|.. +..
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~------~~~ 336 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPI 336 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTT-EEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSC
T ss_pred chhhhhhheecccCCCeEEEEEEECCC-ceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee------ccc
Confidence 346788999999999999999999876 4799999975432 35679999999999999999999999642 568
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++|+|.++++... ...+++.+++.|+.||+.||+|||++ +|+||||||+|||++.++.+||+
T Consensus 337 ~lv~e~~~~gsL~~~l~~~~--------~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~ 405 (535)
T 2h8h_A 337 YIVTEYMSKGSLLDFLKGET--------GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVA 405 (535)
T ss_dssp EEEECCCTTEEHHHHHSHHH--------HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred eEeeehhcCCcHHHHHhhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEc
Confidence 99999999999999996322 12589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHHhhCC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
|||+++...... ........++..|+|||++.+..++.++|||||||++|||++ |+.||......+ ....+....
T Consensus 406 DFG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~~~~i~~~~- 481 (535)
T 2h8h_A 406 DFGLARLIEDNE-YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERGY- 481 (535)
T ss_dssp CTTSTTTCCCHH-HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--HHHHHHTTC-
T ss_pred ccccceecCCCc-eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC-
Confidence 999998653211 111223447789999999998999999999999999999999 999997532211 111110000
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
+......++.++.+++.+||+.||++|||+++|++.|+++...
T Consensus 482 -----------------------------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 482 -----------------------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp -----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred -----------------------------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence 0000113456789999999999999999999999999887543
No 231
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=359.33 Aligned_cols=346 Identities=20% Similarity=0.204 Sum_probs=214.0
Q ss_pred cEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccc
Q 043900 79 IQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAEN 158 (953)
Q Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (953)
+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46677777776 5666554 46777777777777666667777777777777777777666667777777777777777
Q ss_pred cccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCC
Q 043900 159 WLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVP 238 (953)
Q Consensus 159 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (953)
+++...+..|.++++|++|+|++|++++ ..+..|.++++|+.|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVI-------------------------LLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCE-------------------------ECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred cCCccCcccccCCCCCCEEECCCCcccc-------------------------CChhHccccccCCEEECCCCccceeCh
Confidence 6663333344555555555555555543 333344444444444444444332211
Q ss_pred CCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCcc
Q 043900 239 YLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAA 318 (953)
Q Consensus 239 ~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~ 318 (953)
..+..+ ++|+.|++++|++++..+..
T Consensus 146 -----------------------------------------------------~~~~~l-~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 146 -----------------------------------------------------RAFSGL-NSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp -----------------------------------------------------TSSTTC-TTCCEEEEESCCCSSCCHHH
T ss_pred -----------------------------------------------------hhccCC-CCCCEEECCCCcCcccChhH
Confidence 011111 23444444444444444445
Q ss_pred ccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcE
Q 043900 319 IGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTI 398 (953)
Q Consensus 319 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~ 398 (953)
|.++++|+.|+|++|.+.+..+..|..+++|++|++++|.+.+. +|..+....+|+.
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~L~~ 228 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-----------------------MTPNCLYGLNLTS 228 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE-----------------------ECTTTTTTCCCSE
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc-----------------------cCcccccCccccE
Confidence 55666666666666666665555666666666666665554322 2222222234444
Q ss_pred EEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCcc
Q 043900 399 IDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNF 478 (953)
Q Consensus 399 L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 478 (953)
|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 229 -------------------------L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 229 -------------------------LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp -------------------------EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred -------------------------EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 4555555553333567778888888888888887777788888888888888888
Q ss_pred ccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCCCCcccccccccccCCcCCCCC
Q 043900 479 LQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEGVFKNATITSVLGNLKLCGG 554 (953)
Q Consensus 479 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~ 554 (953)
+++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..+....+.......+.++...|+.
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 8888888888888899999999988877777788888899999999988876543322222222344455555543
No 232
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=342.96 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=199.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc--------
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD-------- 701 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-------- 701 (953)
.++|++.+.||+|+||.||+|.+..+++.||+|++........+.+.+|++++++++||||+++++++....
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 467999999999999999999999988999999998777677788999999999999999999999874321
Q ss_pred -cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec
Q 043900 702 -YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD 780 (953)
Q Consensus 702 -~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 780 (953)
.......++||||++ |+|.+++.. ..+++..++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~ 154 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ-----------GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFIN 154 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhc-----------CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEc
Confidence 234567899999997 699999842 3588999999999999999999999 999999999999997
Q ss_pred -CCCcEEEeccccceecCCCCC-cccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 781 -EEMMAHVSDFGLARFLPLSPA-QTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 781 -~~~~~kL~DfG~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
+++.+||+|||.++....... ........+|..|+|||++.+ ..++.++|||||||++|||++|+.||......+ .
T Consensus 155 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~ 233 (320)
T 2i6l_A 155 TEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE-Q 233 (320)
T ss_dssp TTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-H
T ss_pred CCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH-H
Confidence 567999999999987643211 122233457899999998765 678999999999999999999999997643211 1
Q ss_pred HHHHHHhhCCch----hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 858 LHNFARMALPDH----VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 858 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..... ...+.. ..+... ... ............ ........++.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 234 MQLIL-ESIPVVHEEDRQELLS-VIP-VYIRNDMTEPHK---PLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHH-HHSCCCCHHHHHHHHT-TSC-HHHHHHTTSCCC---CHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHH-HhcCCCchhhhhhhhh-cCc-ccccccccCCCC---ChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 11111 111110 000000 000 000000000000 000011134567999999999999999999999986
No 233
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.4e-38 Score=345.65 Aligned_cols=254 Identities=23% Similarity=0.294 Sum_probs=198.0
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++.. .+..
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 91 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-----DGKL 91 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----C-CE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-----CCeE
Confidence 35679999999999999999999998888999999976666667889999999999999999999999643 4678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++... ...+++..++.++.|++.||+|||+. +++||||||+||+++.++.+||+
T Consensus 92 ~lv~e~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 159 (302)
T 2j7t_A 92 WIMIEFCPGGAVDAIMLEL---------DRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLA 159 (302)
T ss_dssp EEEEECCTTEEHHHHHHHH---------TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEEC
T ss_pred EEEEEeCCCCcHHHHHHhh---------ccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEE
Confidence 9999999999999988532 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCccccccccccccccccccc-----CCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYG-----LGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
|||++...... ........||+.|+|||++ .+..++.++||||||+++|||++|..||....... .......
T Consensus 160 Dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~ 236 (302)
T 2j7t_A 160 DFGVSAKNLKT--LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAK 236 (302)
T ss_dssp CCHHHHHHHHH--HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHH
T ss_pred ECCCCcccccc--ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhc
Confidence 99997543110 1112234589999999987 46778999999999999999999999997532111 0011100
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...+. . .....++.++.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~---------~--------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 237 SDPPT---------L--------------------LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp SCCCC---------C--------------------SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cCCcc---------c--------------------CCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00000 0 000123456889999999999999999999975
No 234
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=8.7e-38 Score=342.47 Aligned_cols=253 Identities=21% Similarity=0.243 Sum_probs=197.0
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--------hhhHHHHHHHHHHHhhcCCCCeeEEEeeeccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--------HGAFKSFIAECNTLKNIRHRNLVKILTACSGV 700 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 700 (953)
..++|.+.+.||+|+||.||+|.+..+++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 86 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 86 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-
Confidence 3467999999999999999999999999999999986322 1223457899999999999999999998632
Q ss_pred ccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec
Q 043900 701 DYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD 780 (953)
Q Consensus 701 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 780 (953)
+..++||||+++++|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||+++
T Consensus 87 -----~~~~lv~e~~~~~~L~~~~~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~ 148 (322)
T 2ycf_A 87 -----EDYYIVLELMEGGELFDKVVG----------NKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLS 148 (322)
T ss_dssp -----SSEEEEEECCTTEETHHHHST----------TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEES
T ss_pred -----CceEEEEecCCCCcHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEe
Confidence 348999999999999998852 23689999999999999999999999 999999999999998
Q ss_pred CCCc---EEEeccccceecCCCCCcccccccccccccccccccC---CCCCCcccchHHHHHHHHHHHhCCCCCCCcccC
Q 043900 781 EEMM---AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL---GSEVSINGDVYSYGILLLELVTRKKPVDSMFEG 854 (953)
Q Consensus 781 ~~~~---~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~ 854 (953)
.++. +||+|||+++..... .......||+.|+|||++. +..++.++|||||||++|||++|+.||......
T Consensus 149 ~~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 225 (322)
T 2ycf_A 149 SQEEDCLIKITDFGHSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 225 (322)
T ss_dssp SSSSSCCEEECCCTTCEECCCC---HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS
T ss_pred cCCCCCeEEEccCccceecccc---cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH
Confidence 7664 999999999876422 1223345899999999863 567899999999999999999999999753322
Q ss_pred CccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 855 DMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ............ . .......+.++.+++.+||+.||++|||++|+++
T Consensus 226 ~~-~~~~~~~~~~~~------------~---------------~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 226 VS-LKDQITSGKYNF------------I---------------PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp SC-HHHHHHHTCCCC------------C---------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HH-HHHHHHhCcccc------------C---------------chhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 21 111111100000 0 0001123567899999999999999999999985
No 235
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=4.2e-38 Score=339.55 Aligned_cols=247 Identities=18% Similarity=0.243 Sum_probs=196.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||+||+|++..+++.||+|+++.. .......+.+|+..+.++ +||||+++++++.. .+
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~-----~~ 84 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE-----DD 84 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-----TT
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-----CC
Confidence 46799999999999999999999988889999999743 334457788999999999 99999999999643 47
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC----
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE---- 782 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~---- 782 (953)
..++||||+++++|.+++..... ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~ 155 (289)
T 1x8b_A 85 HMLIQNEYCNGGSLADAISENYR------IMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPN 155 (289)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHH------HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC------
T ss_pred eEEEEEEecCCCcHHHHHHhhcc------cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCc
Confidence 88999999999999999964321 123589999999999999999999999 99999999999999844
Q ss_pred ---------------CcEEEeccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCC
Q 043900 783 ---------------MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKK 846 (953)
Q Consensus 783 ---------------~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~ 846 (953)
..+||+|||.+....... ...||+.|+|||++.+. .++.++|||||||++|||++|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~ 229 (289)
T 1x8b_A 156 AASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEP 229 (289)
T ss_dssp --------------CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccccccccccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCC
Confidence 479999999998764321 23489999999998776 66789999999999999999988
Q ss_pred CCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 847 PVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 847 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
|+... ...........+ ... ..+++++.+++.+||+.||++|||+
T Consensus 230 ~~~~~----~~~~~~~~~~~~---------~~~----------------------~~~~~~~~~li~~~l~~dp~~Rps~ 274 (289)
T 1x8b_A 230 LPRNG----DQWHEIRQGRLP---------RIP----------------------QVLSQEFTELLKVMIHPDPERRPSA 274 (289)
T ss_dssp CCSSS----HHHHHHHTTCCC---------CCS----------------------SCCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred CCcch----hHHHHHHcCCCC---------CCC----------------------cccCHHHHHHHHHHhCCCcccCCCH
Confidence 76431 111111110000 000 0234568899999999999999999
Q ss_pred HHHHH
Q 043900 927 TNVVR 931 (953)
Q Consensus 927 ~evl~ 931 (953)
+|+++
T Consensus 275 ~~ll~ 279 (289)
T 1x8b_A 275 MALVK 279 (289)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99975
No 236
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=6.5e-38 Score=339.88 Aligned_cols=276 Identities=26% Similarity=0.340 Sum_probs=200.6
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
++|++.+.||+|+||.||+|++..+++.||+|+++... ......+.+|++++++++||||+++++++.. .+..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENKL 77 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-----CCce
Confidence 57899999999999999999999888899999986432 2334678899999999999999999999643 3678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||++ ++|.+++..... ..+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 78 ~lv~e~~~-~~L~~~~~~~~~--------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~ 145 (299)
T 2r3i_A 78 YLVFEFLH-QDLKKFMDASAL--------TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLA 145 (299)
T ss_dssp EEEEECCS-EEHHHHHHHTTT--------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEEC
T ss_pred EEEEEccc-CCHHHHHHhhhc--------cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEEC
Confidence 99999997 699999864322 3588999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCC-CCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh-hC
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE-VSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM-AL 866 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~-~~ 866 (953)
|||.+....... .......+|+.|+|||++.+.. ++.++|||||||++|||++|+.||......+. ....... ..
T Consensus 146 dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-~~~~~~~~~~ 222 (299)
T 2r3i_A 146 DFGLARAFGVPV--RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ-LFRIFRTLGT 222 (299)
T ss_dssp STTHHHHHCCCS--BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCC
T ss_pred cchhhhhccCCc--cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHH-HHHHHHHhCC
Confidence 999998764321 2223346899999999988765 79999999999999999999999976432211 1111111 11
Q ss_pred Cch-hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PDH-VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+.. ...-... . ..... ........ .........+.++.+++.+||+.||++|||++|+++
T Consensus 223 ~~~~~~~~~~~-~-~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 223 PDEVVWPGVTS-M-PDYKP-SFPKWARQ--DFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CCTTTSTTGGG-S-TTCCT-TSCCCCCC--CHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CchhhhhHhhc-C-cccch-hhhcccch--hhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 110 0000000 0 00000 00000000 000001123467889999999999999999999986
No 237
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.3e-37 Score=353.66 Aligned_cols=199 Identities=26% Similarity=0.334 Sum_probs=171.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc------CCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI------RHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~~~~~~~~~~ 703 (953)
..+|++.+.||+|+||+||+|.+..+++.||||+++.. ......+.+|+++++.+ .|+||+++++++..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~---- 170 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF---- 170 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE----
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc----
Confidence 45799999999999999999999999999999999753 23345677888888777 57799999999643
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
....++||||+. ++|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+|||++.++
T Consensus 171 -~~~~~lv~e~~~-~~L~~~l~~~~~--------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~ 237 (429)
T 3kvw_A 171 -RNHICMTFELLS-MNLYELIKKNKF--------QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQG 237 (429)
T ss_dssp -TTEEEEEECCCC-CBHHHHHHHTTT--------CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTT
T ss_pred -CCeEEEEEeccC-CCHHHHHHhccC--------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCC
Confidence 378999999995 699998864332 2589999999999999999999999 999999999999999988
Q ss_pred c--EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCc
Q 043900 784 M--AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 784 ~--~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~ 851 (953)
. +||+|||+|+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 238 ~~~vkL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 238 RSGIKVIDFGSSCYEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp SCCEEECCCTTCEETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcceEEeecccceecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 7 999999999865322 22346899999999999999999999999999999999999999764
No 238
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=6.5e-38 Score=363.23 Aligned_cols=253 Identities=23% Similarity=0.276 Sum_probs=200.8
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||+||+|++..+++.||||+++.. .......+.+|++++++++||||+++++++. ...
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 94 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSS 94 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEE-----cCC
Confidence 356799999999999999999999988889999999632 2334578899999999999999999999964 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec---CCC
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD---EEM 783 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~---~~~ 783 (953)
..++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+. +|+||||||+||+++ .++
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~----------~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 161 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIK----------RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDC 161 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTC
T ss_pred EEEEEEEcCCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCC
Confidence 89999999999999998852 23689999999999999999999999 999999999999995 456
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
.+||+|||+++...... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+....+ .......
T Consensus 162 ~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~ 236 (486)
T 3mwu_A 162 DIKIIDFGLSTCFQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVET 236 (486)
T ss_dssp CEEECSCSCTTTBCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH
T ss_pred CEEEEECCcCeECCCCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHh
Confidence 89999999998664322 2234569999999999876 59999999999999999999999997532211 0111110
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
...... .+....+++++.+++.+||+.||++|||+.|+++.
T Consensus 237 ~~~~~~----------------------------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 237 GKYAFD----------------------------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp TCCCSC----------------------------SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred CCCCCC----------------------------CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 000000 00011235568899999999999999999999873
No 239
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=3.1e-38 Score=340.79 Aligned_cols=255 Identities=21% Similarity=0.257 Sum_probs=186.1
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||+||+|++..+++.||+|+++... ....+.+.++...++.++||||+++++++. .++.
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~~~~ 80 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REGD 80 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSS
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----ccCC
Confidence 467999999999999999999999888999999996432 222334445555688889999999999964 3477
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||++ |+|.+++..... ....+++..++.++.|++.||+|||+. .+|+||||||+||+++.++.+||
T Consensus 81 ~~lv~e~~~-~~l~~~l~~~~~------~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl 151 (290)
T 3fme_A 81 VWICMELMD-TSLDKFYKQVID------KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKM 151 (290)
T ss_dssp EEEEEECCS-EEHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEB
T ss_pred EEEEEehhc-cchHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEE
Confidence 999999996 588887753211 134689999999999999999999984 28999999999999999999999
Q ss_pred eccccceecCCCCCccccccccccccccccccc----CCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYG----LGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
+|||.++...... ......||+.|+|||++ .+..++.++||||+||++|||++|+.||...............
T Consensus 152 ~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~ 228 (290)
T 3fme_A 152 CDFGISGYLVDDV---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVE 228 (290)
T ss_dssp CCC------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHH
T ss_pred eecCCcccccccc---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhc
Confidence 9999998764322 22234589999999995 5667899999999999999999999999753222111111111
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...+.. . ...+++++.+++.+||+.||++|||++|+++
T Consensus 229 ~~~~~~------------~------------------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 229 EPSPQL------------P------------------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp SCCCCC------------C------------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCCCc------------c------------------cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 110000 0 0023456889999999999999999999987
No 240
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.5e-38 Score=341.10 Aligned_cols=252 Identities=23% Similarity=0.285 Sum_probs=198.4
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..++|++.+.||+|+||.||+|.+..+++.||+|++.... ..+.+.+|+.++++++||||+++++++.. ....
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 99 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTDL 99 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEE
Confidence 4567999999999999999999999888899999997533 34678999999999999999999999643 3678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEe
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVS 788 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 788 (953)
++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +++||||||+||+++.++.+||+
T Consensus 100 ~lv~e~~~~~~L~~~~~~~---------~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 167 (314)
T 3com_A 100 WIVMEYCGAGSVSDIIRLR---------NKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLA 167 (314)
T ss_dssp EEEEECCTTEEHHHHHHHH---------TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEEC
T ss_pred EEEeecCCCCCHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEe
Confidence 9999999999999998521 23589999999999999999999999 99999999999999999999999
Q ss_pred ccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCCc
Q 043900 789 DFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALPD 868 (953)
Q Consensus 789 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 868 (953)
|||.+...... ........|++.|+|||++.+..++.++||||||+++|||++|+.||....... .........+.
T Consensus 168 dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~ 243 (314)
T 3com_A 168 DFGVAGQLTDT--MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPTNPPP 243 (314)
T ss_dssp CCTTCEECBTT--BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCCC
T ss_pred ecccchhhhhh--ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcCCCc
Confidence 99999876432 222334568999999999999999999999999999999999999997532111 00000000000
Q ss_pred hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 869 HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 869 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. . ......+.++.+++.+||+.||++|||+.|+++
T Consensus 244 ~--------~--------------------~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 244 T--------F--------------------RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp C--------C--------------------SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred c--------c--------------------CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0 0 000123456889999999999999999999986
No 241
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=3e-38 Score=351.98 Aligned_cols=200 Identities=26% Similarity=0.366 Sum_probs=174.1
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++.. .....+.+.+|+.++++++||||+++++++.. ++..
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 106 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI 106 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-----TTEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-----CCEE
Confidence 35799999999999999999999988899999999754 34456788999999999999999999999643 4779
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhh-CCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHH-DCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
++||||+++++|.+++.. ...+++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||
T Consensus 107 ~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl 173 (360)
T 3eqc_A 107 SICMEHMDGGSLDQVLKK----------AGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKL 173 (360)
T ss_dssp EEEECCCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEE
Confidence 999999999999999953 2358899999999999999999998 5 8999999999999999999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCc
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~ 851 (953)
+|||+++..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 174 ~Dfg~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 233 (360)
T 3eqc_A 174 CDFGVSGQLIDS----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 233 (360)
T ss_dssp CCCCCCHHHHHH----C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred EECCCCcccccc----cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 999999755321 222346899999999999999999999999999999999999999753
No 242
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=6.9e-38 Score=349.81 Aligned_cols=278 Identities=21% Similarity=0.234 Sum_probs=199.7
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-CCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY-QGN 705 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~ 705 (953)
..++|.+.+.||+|+||.||+|.+..+++.||||+++.. .....+.+.+|+.+++.++||||+++++++..... ...
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 356899999999999999999999999999999999643 33345788899999999999999999999754321 111
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcE
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMA 785 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 785 (953)
...++||||++ ++|.+++. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~ 183 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMG------------MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCEL 183 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTT------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCE
T ss_pred eeEEEEEcccc-ccHHHHhh------------cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCE
Confidence 23499999996 68888873 2489999999999999999999999 99999999999999999999
Q ss_pred EEeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 786 HVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 786 kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
||+|||.++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+ ........
T Consensus 184 kL~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~ 257 (371)
T 4exu_A 184 KILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKV 257 (371)
T ss_dssp EECSTTCC-------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHH
T ss_pred EEEecCcccccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHH
Confidence 99999999865322 233468999999999887 689999999999999999999999997532211 11111111
Q ss_pred h-CCc-hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 A-LPD-HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. .+. .....+.... ......................+++++.+++.+||+.||++|||++|+++
T Consensus 258 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 258 TGVPGTEFVQKLNDKA---AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HCCCCHHHHTTCSCHH---HHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hCCCcHHHHHHhhhhh---hhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 1 111 0111000000 00000000000000000011134567999999999999999999999986
No 243
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=6.1e-38 Score=335.81 Aligned_cols=248 Identities=24% Similarity=0.322 Sum_probs=193.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|.+.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.+++.++||||+++++++. ..+
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-----TPT 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cCC
Confidence 467999999999999999999999888899999996432 234567889999999999999999999964 347
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +++||||||+||+++.++.+|
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~ 151 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICK----------HGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAK 151 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEE
T ss_pred eEEEEEeccCCCcHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEE
Confidence 89999999999999999952 23588999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||.+....... ......|++.|+|||++.+..+ +.++||||||+++|||++|+.||...... .........
T Consensus 152 l~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~ 226 (276)
T 2h6d_A 152 IADFGLSNMMSDGE---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--TLFKKIRGG 226 (276)
T ss_dssp ECCCCGGGCCCC----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC
T ss_pred EeecccccccCCCc---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhhcC
Confidence 99999998764322 2223458999999999988765 68999999999999999999999752111 000000000
Q ss_pred CCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 LPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.... +...+.++.+++.+||+.||++|||++|+++
T Consensus 227 ------------~~~~-------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 227 ------------VFYI-------------------PEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp ------------CCCC-------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ------------cccC-------------------chhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 0000 0012346889999999999999999999987
No 244
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=1e-37 Score=362.09 Aligned_cols=256 Identities=20% Similarity=0.273 Sum_probs=199.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||+||+|++..+++.||+|+++... ......+.+|+.+++.++||||++++++|. ....
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 110 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE-----DKRN 110 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCE
Confidence 456999999999999999999999888999999997432 334577899999999999999999999964 3478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC---Cc
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE---MM 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~---~~ 784 (953)
.++||||+++|+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+||+++.. +.
T Consensus 111 ~~lv~e~~~~g~L~~~~~~----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~ 177 (494)
T 3lij_A 111 YYLVMECYKGGELFDEIIH----------RMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDAL 177 (494)
T ss_dssp EEEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCC
T ss_pred EEEEEecCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCc
Confidence 9999999999999998852 23589999999999999999999999 99999999999999764 45
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||+++.+.... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||......+ ........
T Consensus 178 ~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~ 252 (494)
T 3lij_A 178 IKIVDFGLSAVFENQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE-ILRKVEKG 252 (494)
T ss_dssp EEECCCTTCEECBTTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHT
T ss_pred EEEEECCCCeECCCCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhC
Confidence 9999999998765332 233456999999999976 469999999999999999999999997532211 01111100
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH--HHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ--LQSI 936 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~--L~~i 936 (953)
..... . .....+++++.+++.+||+.||++|||+.|+++. +.+.
T Consensus 253 ~~~~~------------~----------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~ 298 (494)
T 3lij_A 253 KYTFD------------S----------------PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM 298 (494)
T ss_dssp CCCCC------------S----------------GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred CCCCC------------c----------------hhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence 00000 0 0001234568899999999999999999999863 4443
No 245
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1e-37 Score=363.01 Aligned_cols=252 Identities=22% Similarity=0.313 Sum_probs=199.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch-------------hhHHHHHHHHHHHhhcCCCCeeEEEe
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH-------------GAFKSFIAECNTLKNIRHRNLVKILT 695 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~~~~ 695 (953)
..++|++.+.||+|+||+||+|++..+++.||+|+++.... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 45789999999999999999999999999999999964321 23567899999999999999999999
Q ss_pred eecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCC
Q 043900 696 ACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPS 775 (953)
Q Consensus 696 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 775 (953)
+|. .....++||||+++|+|.+++.. ...+++..++.++.||+.||+|||+. +|+||||||+
T Consensus 114 ~~~-----~~~~~~lv~e~~~gg~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~ 175 (504)
T 3q5i_A 114 VFE-----DKKYFYLVTEFYEGGELFEQIIN----------RHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPE 175 (504)
T ss_dssp EEE-----CSSEEEEEEECCTTCBHHHHHHH----------HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred EEE-----cCCEEEEEEecCCCCcHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHH
Confidence 964 44789999999999999998852 23589999999999999999999999 9999999999
Q ss_pred CeEecCCC---cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcc
Q 043900 776 NVLLDEEM---MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMF 852 (953)
Q Consensus 776 NIll~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~ 852 (953)
||+++.++ .+||+|||+++...... ......||+.|+|||++. ..++.++||||+||++|+|++|..||....
T Consensus 176 Nil~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 251 (504)
T 3q5i_A 176 NILLENKNSLLNIKIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN 251 (504)
T ss_dssp GEEESSTTCCSSEEECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEEecCCCCccEEEEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99998776 69999999998775332 223456999999999987 468999999999999999999999997532
Q ss_pred cCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 853 EGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..+ ....... ...... ......+++++.+++.+||+.||.+|||++|+++
T Consensus 252 ~~~--~~~~i~~-----------~~~~~~----------------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 252 DQD--IIKKVEK-----------GKYYFD----------------FNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHH--HHHHHHH-----------CCCCCC----------------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHH--HHHHHHc-----------CCCCCC----------------ccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 211 1111100 000000 0011134567899999999999999999999986
No 246
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2e-38 Score=344.64 Aligned_cols=269 Identities=22% Similarity=0.306 Sum_probs=185.2
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
..++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.++++++||||+++++++.. .+.
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 87 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV-----KDE 87 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEES-----SSC
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee-----cCC
Confidence 4578999999999999999999998888899999986432 3345678899999999999999999999643 367
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++++|.+++....... ......+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 88 ~~lv~e~~~~~~L~~~l~~~~~~~--~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 162 (303)
T 2vwi_A 88 LWLVMKLLSGGSVLDIIKHIVAKG--EHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQI 162 (303)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHTT--TTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEE
T ss_pred cEEEehhccCCchHHHHHHHhhcc--ccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEE
Confidence 899999999999999986322110 01234689999999999999999999999 9999999999999999999999
Q ss_pred eccccceecCCCCC---cccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 788 SDFGLARFLPLSPA---QTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 788 ~DfG~a~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
+|||.+........ ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||......... ....
T Consensus 163 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~ 240 (303)
T 2vwi_A 163 ADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVL--MLTL 240 (303)
T ss_dssp CCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHH--HHHH
T ss_pred EeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHH--HHHh
Confidence 99999976643221 111233468999999999876 56899999999999999999999999764322111 1010
Q ss_pred hhCCchhh-hhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVV-DIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
...+.... ...+... ...++.++.+++.+||+.||++|||++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 241 QNDPPSLETGVQDKEM----------------------LKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TSSCCCTTC-----CC----------------------CCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ccCCCccccccccchh----------------------hhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 00000000 0000000 0022456889999999999999999999986
No 247
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=5e-38 Score=364.44 Aligned_cols=251 Identities=24% Similarity=0.305 Sum_probs=202.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||||++.... ......+.+|+.++++++||||+++++++. ...
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 99 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFE-----DKG 99 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 457999999999999999999999888999999996432 345678999999999999999999999964 447
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---cCCC
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL---DEEM 783 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~ 783 (953)
..++||||+++|+|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+||++ +.++
T Consensus 100 ~~~lv~e~~~~~~L~~~~~~----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 166 (484)
T 3nyv_A 100 YFYLVGEVYTGGELFDEIIS----------RKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDA 166 (484)
T ss_dssp EEEEEECCCCSCBHHHHHHT----------CSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTC
T ss_pred EEEEEEecCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCC
Confidence 89999999999999998852 23689999999999999999999999 99999999999999 5678
Q ss_pred cEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
.+||+|||+++.+.... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||......+ ......
T Consensus 167 ~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~ 240 (484)
T 3nyv_A 167 NIRIIDFGLSTHFEASK---KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD--ILKKVE 240 (484)
T ss_dssp CEEECCTTHHHHBCCCC---SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHH
T ss_pred cEEEEeeeeeEEccccc---ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHH
Confidence 99999999998764332 2234569999999999876 69999999999999999999999997532211 111110
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ..... .+....+++++.+++.+||+.||++|||++|+++
T Consensus 241 ~~-----------~~~~~----------------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 241 KG-----------KYTFE----------------LPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HC-----------CCCCC----------------SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cC-----------CCCCC----------------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 00 00000 0001133567889999999999999999999986
No 248
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.4e-37 Score=346.98 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=194.9
Q ss_pred HHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-
Q 043900 624 QNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY- 702 (953)
Q Consensus 624 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~- 702 (953)
.......++|++.+.||+|+||.||+|++..+++.||||++.... .....+.+|++.++.++||||++++++|.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 456677889999999999999999999999888899999986432 233456778888899999999999999865322
Q ss_pred -CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHh--hCCCCCeEeecCCCCCeEe
Q 043900 703 -QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLH--HDCQPPITHCDLKPSNVLL 779 (953)
Q Consensus 703 -~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--~~~~~~ivH~Dlkp~NIll 779 (953)
......++||||+++ ++.+.+.... .....+++..+..++.|++.||.||| +. +|+||||||+||++
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~------~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll 164 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYY------RRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLV 164 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHH------TTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHh------hcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEE
Confidence 222347899999976 4444332111 12346889999999999999999999 77 99999999999999
Q ss_pred cC-CCcEEEeccccceecCCCCCcccccccccccccccccccCCCC-CCcccchHHHHHHHHHHHhCCCCCCCcccCCcc
Q 043900 780 DE-EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSE-VSINGDVYSYGILLLELVTRKKPVDSMFEGDMN 857 (953)
Q Consensus 780 ~~-~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~ 857 (953)
+. ++.+||+|||+++...... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||......+ .
T Consensus 165 ~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~-~ 240 (360)
T 3e3p_A 165 NEADGTLKLCDFGSAKKLSPSE---PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAG-Q 240 (360)
T ss_dssp ETTTTEEEECCCTTCBCCCTTS---CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-H
T ss_pred eCCCCcEEEeeCCCceecCCCC---CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHH-H
Confidence 96 8999999999998764332 223446899999999987654 8999999999999999999999997632221 1
Q ss_pred HHHHHHhhCCc--hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 858 LHNFARMALPD--HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 858 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
........... ......++..... +....................++++.+++.+||+.||++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 241 LHEIVRVLGCPSREVLRKLNPSHTDV--DLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHHHHHHHCCCCHHHHHHHCTTCCCG--GGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHhcccchhhc--cccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 22222211111 1111111110000 000000000000001111124667999999999999999999999986
No 249
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=3.2e-38 Score=340.87 Aligned_cols=261 Identities=24% Similarity=0.325 Sum_probs=196.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcC-C--CeEEEEEEeecc---chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQ-G--KTTVAVKVFNLL---HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQ 703 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~--~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 703 (953)
.++|++.+.||+|+||+||+|++.. + ...||+|+++.. .....+.+.+|++++++++||||+++++++..
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 92 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---- 92 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence 4579999999999999999999743 2 236899998643 33456788999999999999999999999643
Q ss_pred CCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCC
Q 043900 704 GNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEM 783 (953)
Q Consensus 704 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 783 (953)
...++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 93 --~~~~~v~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~ 158 (291)
T 1u46_A 93 --PPMKMVTELAPLGSLLDRLRKH---------QGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRD 158 (291)
T ss_dssp --SSCEEEEECCTTCBHHHHHHHH---------GGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETT
T ss_pred --CCceeeEecccCCCHHHHHHhc---------cCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCC
Confidence 2378999999999999999632 23589999999999999999999999 999999999999999999
Q ss_pred cEEEeccccceecCCCCCcc-cccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHH
Q 043900 784 MAHVSDFGLARFLPLSPAQT-SSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~ 861 (953)
.+||+|||++.......... ......+|..|+|||++.+..++.++||||||+++|||++ |+.||...... ..
T Consensus 159 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~ 233 (291)
T 1u46_A 159 LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS-----QI 233 (291)
T ss_dssp EEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HH
T ss_pred CEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH-----HH
Confidence 99999999998775433221 2233457889999999988889999999999999999999 99999753211 11
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
........ .. ......++.++.+++.+||+.||++|||+.++++.|+++...
T Consensus 234 ~~~~~~~~--------~~------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 234 LHKIDKEG--------ER------------------LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp HHHHHTSC--------CC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHHHHccC--------CC------------------CCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 11100000 00 000012345789999999999999999999999999987543
No 250
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.3e-37 Score=335.37 Aligned_cols=253 Identities=20% Similarity=0.263 Sum_probs=201.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---------hhhHHHHHHHHHHHhhcC-CCCeeEEEeeec
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---------HGAFKSFIAECNTLKNIR-HRNLVKILTACS 698 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~ 698 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 4578999999999999999999999999999999997432 123467889999999995 999999999964
Q ss_pred ccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeE
Q 043900 699 GVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVL 778 (953)
Q Consensus 699 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 778 (953)
.+...++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +++||||||+||+
T Consensus 95 -----~~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil 156 (298)
T 1phk_A 95 -----TNTFFFLVFDLMKKGELFDYLTE----------KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENIL 156 (298)
T ss_dssp -----CSSEEEEEEECCTTCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEE
T ss_pred -----cCCeEEEEEeccCCCcHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEE
Confidence 34789999999999999999952 23589999999999999999999999 9999999999999
Q ss_pred ecCCCcEEEeccccceecCCCCCcccccccccccccccccccC------CCCCCcccchHHHHHHHHHHHhCCCCCCCcc
Q 043900 779 LDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL------GSEVSINGDVYSYGILLLELVTRKKPVDSMF 852 (953)
Q Consensus 779 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDv~slG~vl~elltg~~pf~~~~ 852 (953)
++.++.+||+|||.+....... ......|++.|+|||++. ...++.++||||||+++|||++|+.||....
T Consensus 157 ~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~ 233 (298)
T 1phk_A 157 LDDDMNIKLTDFGFSCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK 233 (298)
T ss_dssp ECTTCCEEECCCTTCEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred EcCCCcEEEecccchhhcCCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc
Confidence 9999999999999998765332 223356899999999874 4568899999999999999999999996532
Q ss_pred cCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 853 EGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. ......... ..... ......++.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~--~~~~~~~~~-----------~~~~~----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 234 QM--LMLRMIMSG-----------NYQFG----------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HH--HHHHHHHHT-----------CCCCC----------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HH--HHHHHHhcC-----------CcccC----------------cccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 11 111100000 00000 0000123457899999999999999999999875
No 251
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=6.5e-38 Score=346.42 Aligned_cols=256 Identities=21% Similarity=0.281 Sum_probs=196.6
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc-chhhHHHHHHHHHH-HhhcCCCCeeEEEeeecccccCCCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL-HHGAFKSFIAECNT-LKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .......+..|..+ ++.++||||+++++++.. .+
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~-----~~ 123 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-----EG 123 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEEC-----SS
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEe-----CC
Confidence 346789999999999999999999888899999999743 22334555566665 777899999999999643 36
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++ +|.+++..... ....+++..++.++.||+.||+|||+. .+|+||||||+||+++.++.+|
T Consensus 124 ~~~lv~e~~~~-~L~~~l~~~~~------~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~~k 194 (340)
T 3an0_A 124 DVWICMELMDT-SLDKFYKQVID------KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVK 194 (340)
T ss_dssp CEEEEECCCSE-EHHHHHHHHHH------TSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTCEE
T ss_pred cEEEEHHHhhC-cHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEE
Confidence 79999999975 99888853211 134689999999999999999999973 2899999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccC----CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL----GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
|+|||+++..... .......||+.|+|||++. +..++.++|||||||++|||++|+.||..............
T Consensus 195 l~Dfg~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 271 (340)
T 3an0_A 195 MCDFGISGYLVDS---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVV 271 (340)
T ss_dssp ECCCSHHHHHSCH---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHH
T ss_pred EeeCCCceecccc---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHh
Confidence 9999999876421 1222346999999999964 34789999999999999999999999975322111111111
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
....+ ... ...++.++.+++.+||+.||++|||+.|+++
T Consensus 272 ~~~~~------------~~~------------------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 272 EEPSP------------QLP------------------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp HSCCC------------CCC------------------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCCC------------CCC------------------cccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 10000 000 0023456899999999999999999999987
No 252
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.6e-38 Score=355.41 Aligned_cols=265 Identities=8% Similarity=0.007 Sum_probs=184.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhc--CCCCeeEEEeee-------
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNI--RHRNLVKILTAC------- 697 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l--~h~niv~~~~~~------- 697 (953)
...|.+.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+.+++.+ +||||++++..+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345889999999999999999999888999999997543 23456677885544444 699988865322
Q ss_pred ccccc------------CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHH------HHHHHHHHHHHHHH
Q 043900 698 SGVDY------------QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQR------LNIGIDVACALSYL 759 (953)
Q Consensus 698 ~~~~~------------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~------~~i~~~i~~~L~~L 759 (953)
..... ......++||||++ |+|.+++..... .+++..+ ..++.||+.||+||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---------~~~~~~~~~~~vk~~i~~qi~~aL~~L 210 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF---------VYVFRGDEGILALHILTAQLIRLAANL 210 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH---------SCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc---------ccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 11100 00134799999998 899999964321 2344445 78889999999999
Q ss_pred hhCCCCCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCC--CCCCcccchHHHHHH
Q 043900 760 HHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG--SEVSINGDVYSYGIL 837 (953)
Q Consensus 760 H~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDv~slG~v 837 (953)
|++ +|+||||||+|||++.++.+||+|||+|+..... .....+|+.|+|||++.+ ..++.++|||||||+
T Consensus 211 H~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~i 282 (371)
T 3q60_A 211 QSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLS 282 (371)
T ss_dssp HHT---TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHH
T ss_pred HHC---CCccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHH
Confidence 999 9999999999999999999999999999876321 113457799999999987 689999999999999
Q ss_pred HHHHHhCCCCCCCcccCCccHHHHHHhhCCch-hhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccc
Q 043900 838 LLELVTRKKPVDSMFEGDMNLHNFARMALPDH-VVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACS 916 (953)
Q Consensus 838 l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl 916 (953)
+|||++|+.||......... ..... ........ ........+++++.+++.+||
T Consensus 283 l~elltg~~Pf~~~~~~~~~-------~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~li~~~L 337 (371)
T 3q60_A 283 IYRVWCLFLPFGLVTPGIKG-------SWKRPSLRVPGTDS------------------LAFGSCTPLPDFVKTLIGRFL 337 (371)
T ss_dssp HHHHHHSSCSTTBCCTTCTT-------CCCBCCTTSCCCCS------------------CCCTTSSCCCHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcCccccc-------chhhhhhhhccccc------------------cchhhccCCCHHHHHHHHHHc
Confidence 99999999999864322100 00000 00000000 000001133567899999999
Q ss_pred cCCCCCCCCHHHHHH--HHHHHH
Q 043900 917 MESPGDRMNMTNVVR--QLQSIK 937 (953)
Q Consensus 917 ~~dP~~RPt~~evl~--~L~~i~ 937 (953)
+.||++|||++|+++ .++++.
T Consensus 338 ~~dP~~Rpt~~e~l~hp~f~~~~ 360 (371)
T 3q60_A 338 NFDRRRRLLPLEAMETPEFLQLQ 360 (371)
T ss_dssp CSSTTTCCCHHHHTTSHHHHHHH
T ss_pred CCChhhCCCHHHHhcCHHHHHHH
Confidence 999999999999975 344443
No 253
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.4e-37 Score=371.67 Aligned_cols=245 Identities=21% Similarity=0.252 Sum_probs=199.9
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc---chhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL---HHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 704 (953)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+..|..++..+ +||+|+++++++ ..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~-----~~ 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEEC-----BC
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEE-----Ee
Confidence 456799999999999999999999999999999999742 234456788899999988 799999999984 45
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++|+|.++++. ...+++.+++.++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 414 ~~~~~lV~E~~~gg~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ 480 (674)
T 3pfq_A 414 MDRLYFVMEYVNGGDLMYHIQQ----------VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGH 480 (674)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSC
T ss_pred CCEEEEEEeCcCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCc
Confidence 5789999999999999999963 23589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||+|+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... .....
T Consensus 481 ikL~DFGla~~~~~~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~-----~~~~~ 553 (674)
T 3pfq_A 481 IKIADFGMCKENIWDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-----ELFQS 553 (674)
T ss_dssp EEECCCTTCEECCCTT--CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHH
T ss_pred EEEeecceeeccccCC--cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH-----HHHHH
Confidence 9999999998643222 2234567999999999999999999999999999999999999999753211 11111
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
. ...... .+...++++.+++.+||+.||++||++
T Consensus 554 i--------~~~~~~--------------------~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 554 I--------MEHNVA--------------------YPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp H--------HSSCCC--------------------CCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred H--------HhCCCC--------------------CCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 1 100000 000234568899999999999999998
No 254
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=1.4e-37 Score=345.00 Aligned_cols=271 Identities=16% Similarity=0.216 Sum_probs=201.6
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhh-----------------HHHHHHHHHHHhhcCCCCeeE
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGA-----------------FKSFIAECNTLKNIRHRNLVK 692 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~niv~ 692 (953)
.++|++.+.||+|+||.||+|++ +++.||+|++....... .+.+.+|++++++++||||++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~ 107 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT 107 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence 46899999999999999999999 66799999996432211 178999999999999999999
Q ss_pred EEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhh-CCCCCeEeec
Q 043900 693 ILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHH-DCQPPITHCD 771 (953)
Q Consensus 693 ~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~D 771 (953)
+++++.. .+..++||||+++|+|.+++.....- .......+++..++.++.|++.||+|||+ . ||+|||
T Consensus 108 ~~~~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~~l--~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~d 177 (348)
T 2pml_X 108 CEGIITN-----YDEVYIIYEYMENDSILKFDEYFFVL--DKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRD 177 (348)
T ss_dssp CSEEEES-----SSEEEEEEECCTTCBSSEESSSEESS--CSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCC
T ss_pred EEEEEee-----CCeEEEEEeccCCCcHHHHHHHhhhh--hhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecC
Confidence 9999643 47899999999999999994321100 00113479999999999999999999999 8 999999
Q ss_pred CCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCC-CCCc-ccchHHHHHHHHHHHhCCCCCC
Q 043900 772 LKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSI-NGDVYSYGILLLELVTRKKPVD 849 (953)
Q Consensus 772 lkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~sDv~slG~vl~elltg~~pf~ 849 (953)
|||+||+++.++.+||+|||.+...... ......|++.|+|||++.+. .++. ++||||||+++|||++|+.||.
T Consensus 178 l~p~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 253 (348)
T 2pml_X 178 VKPSNILMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFS 253 (348)
T ss_dssp CCGGGEEECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CChHhEEEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999876432 23345689999999999887 6666 9999999999999999999997
Q ss_pred CcccCCccHHHHHHhhC--CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHH
Q 043900 850 SMFEGDMNLHNFARMAL--PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMT 927 (953)
Q Consensus 850 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ 927 (953)
................. +........... ...........+.++.+++.+||+.||++|||++
T Consensus 254 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ 318 (348)
T 2pml_X 254 LKISLVELFNNIRTKNIEYPLDRNHFLYPLT---------------NKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSE 318 (348)
T ss_dssp CSSCSHHHHHHHTSCCCCCCCSSSSSTTTTC---------------C--------CCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred CCCcHHHHHHHHhccCcCCccchhhhhcccc---------------ccccccchhhcCHHHHHHHHHHccCChhhCCCHH
Confidence 54332111111111100 000000000000 0000001123456789999999999999999999
Q ss_pred HHHH
Q 043900 928 NVVR 931 (953)
Q Consensus 928 evl~ 931 (953)
|+++
T Consensus 319 e~l~ 322 (348)
T 2pml_X 319 DALK 322 (348)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9987
No 255
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.4e-37 Score=341.70 Aligned_cols=282 Identities=23% Similarity=0.320 Sum_probs=203.2
Q ss_pred hhcCCcccCcccccceeeEEEEEEc-CCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhc---CCCCeeEEEeeeccccc
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILD-QGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNI---RHRNLVKILTACSGVDY 702 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~~~ 702 (953)
..++|++.+.||+|+||.||+|++. .+++.||+|+++... ......+.+|+.+++.+ +||||++++++|.....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 4578999999999999999999995 667899999996432 22233556777777666 89999999999764333
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE 782 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 782 (953)
......++||||++ |+|.+++..... ..+++..++.++.|++.||+|||+. ||+||||||+||+++.+
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~ 156 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPE--------PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSS 156 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCT--------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTT
T ss_pred CCCceEEEEEecCC-CCHHHHHHhccc--------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCC
Confidence 34577899999997 699999864322 2589999999999999999999999 99999999999999999
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
+.+||+|||.++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+ ......
T Consensus 157 ~~~kl~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~ 232 (326)
T 1blx_A 157 GQIKLADFGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKIL 232 (326)
T ss_dssp CCEEECSCCSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHH
T ss_pred CCEEEecCcccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHH
Confidence 99999999999865321 22334568999999999999999999999999999999999999997533221 111111
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..........+....... .. ........ ........++.++.+++.+||+.||++|||+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 233 DVIGLPGEEDWPRDVALP-RQ--AFHSKSAQ--PIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp HHHCCCCGGGSCTTCSSC-GG--GSCCCCCC--CGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHcCCCCcccCccccccc-hh--hhcccCcc--hhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 111000000000000000 00 00000000 000011134567889999999999999999999985
No 256
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=2.6e-37 Score=349.84 Aligned_cols=284 Identities=21% Similarity=0.263 Sum_probs=204.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC--------CCCeeEEEeeecccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR--------HRNLVKILTACSGVD 701 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~~~~~~~~~~ 701 (953)
.++|++.+.||+|+||+||+|++..+++.||||+++.. ....+.+.+|++++++++ |+||+++++++...
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~- 113 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS- 113 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-
Confidence 46799999999999999999999999999999999743 334567889999999985 78899999987532
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE 781 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 781 (953)
.......++||||+ ++++.+++.... ...+++..++.++.||+.||+|||+++ ||+||||||+|||++.
T Consensus 114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~--------~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~ 182 (397)
T 1wak_A 114 GVNGTHICMVFEVL-GHHLLKWIIKSN--------YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSV 182 (397)
T ss_dssp ETTEEEEEEEECCC-CCBHHHHHHHTT--------TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECC
T ss_pred CCCCceEEEEEecc-CccHHHHHHhcc--------cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEec
Confidence 12446789999999 556666654221 235899999999999999999999852 8999999999999997
Q ss_pred CC-------------------------------------------------cEEEeccccceecCCCCCccccccccccc
Q 043900 782 EM-------------------------------------------------MAHVSDFGLARFLPLSPAQTSSIDAKGSI 812 (953)
Q Consensus 782 ~~-------------------------------------------------~~kL~DfG~a~~~~~~~~~~~~~~~~gt~ 812 (953)
++ .+||+|||.++..... .....||+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~ 257 (397)
T 1wak_A 183 NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTR 257 (397)
T ss_dssp CHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCG
T ss_pred cchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCC
Confidence 75 7999999999876432 23346899
Q ss_pred ccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccH-----HHHHHhh--CCchhh-------hhccccc
Q 043900 813 GYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNL-----HNFARMA--LPDHVV-------DIVDSTL 878 (953)
Q Consensus 813 ~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~-----~~~~~~~--~~~~~~-------~~~~~~l 878 (953)
.|+|||++.+..++.++|||||||++|||++|+.||......+... ....... .+.... +......
T Consensus 258 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 337 (397)
T 1wak_A 258 QYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKG 337 (397)
T ss_dssp GGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTS
T ss_pred cccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcc
Confidence 9999999999999999999999999999999999997643322111 1111100 011000 0000000
Q ss_pred -cCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 879 -LSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 879 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
..........................+.++.+++.+||+.||++|||++|+++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 338 DLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp SBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred ccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00000000000000001112223466788999999999999999999999985
No 257
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=1.3e-37 Score=349.88 Aligned_cols=277 Identities=20% Similarity=0.255 Sum_probs=195.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-CCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY-QGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~ 708 (953)
..+|++.+.||+|+||.||+|++..+++ ||+|++..... ...+|+++++.++||||++++++|..... .+....
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~ 113 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence 3569999999999999999999988874 88887753222 12369999999999999999999754422 233447
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec-CCCcEEE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD-EEMMAHV 787 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kL 787 (953)
++||||++++.+..... .. .....+++..++.++.||+.||+|||+. +|+||||||+||+++ .++.+||
T Consensus 114 ~lv~e~~~~~l~~~~~~-~~------~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL 183 (394)
T 4e7w_A 114 NLVLEYVPETVYRASRH-YA------KLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKL 183 (394)
T ss_dssp EEEEECCSEEHHHHHHH-HH------HTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred EEEeeccCccHHHHHHH-HH------hhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEE
Confidence 89999997754433321 11 1124689999999999999999999999 999999999999999 7999999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
+|||+|+....... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+ .+........
T Consensus 184 ~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g 259 (394)
T 4e7w_A 184 IDFGSAKILIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGID-QLVEIIKVLG 259 (394)
T ss_dssp CCCTTCEECCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHC
T ss_pred eeCCCcccccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhC
Confidence 99999987643322 2345689999999998765 58999999999999999999999997633221 1122221111
Q ss_pred -Cch-hhhhccccccC-CchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 -PDH-VVDIVDSTLLS-DDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 -~~~-~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
+.. ......+.... .... ..............++++.+++.+||+.||++|||+.|+++
T Consensus 260 ~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 260 TPSREQIKTMNPNYMEHKFPQ------IRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp CCCHHHHHHHCGGGSSSCCCC------CCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCCHHHHHhhChhhhhhcccc------ccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 110 00000100000 0000 00000000011124567999999999999999999999986
No 258
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.4e-37 Score=352.56 Aligned_cols=278 Identities=20% Similarity=0.232 Sum_probs=197.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-CCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY-QGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~ 708 (953)
..+|++.+.||+|+||.||+|++..+++.||||++..... ...+|++++++++||||++++++|..... .+....
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 3468999999999999999999998888999999864322 23469999999999999999998754321 222346
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC-CcEEE
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE-MMAHV 787 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kL 787 (953)
++||||+++ ++.+.+..... ....+++..++.++.||++||+|||+. +|+||||||+|||++.+ +.+||
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~------~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl 198 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSR------AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKL 198 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred Eeehhcccc-cHHHHHHHHhh------ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEe
Confidence 799999975 66665532111 134689999999999999999999999 99999999999999965 57899
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
+|||+++.+..... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+ .+.......-
T Consensus 199 ~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~-~l~~i~~~lg 274 (420)
T 1j1b_A 199 CDFGSAKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD-QLVEIIKVLG 274 (420)
T ss_dssp CCCTTCEECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHC
T ss_pred ccchhhhhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhC
Confidence 99999987643322 2335689999999998765 78999999999999999999999997632221 1222222111
Q ss_pred Cc---hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 867 PD---HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 867 ~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.. .+... .+..... ........ ..........++++.+++.+||+.||++|||+.|+++
T Consensus 275 ~p~~~~~~~~-~~~~~~~----~~p~~~~~-~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 275 TPTREQIREM-NPNYTEF----KFPQIKAH-PWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp SCCHHHHHHH-CSCCCCC----CCCCCCCC-CHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCHHHHHhh-Chhhhhh----ccCccCCC-CHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 11 01111 1100000 00000000 0000001123567899999999999999999999986
No 259
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=343.11 Aligned_cols=277 Identities=21% Similarity=0.235 Sum_probs=198.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcCCCCeeEEEeeeccccc-CCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDY-QGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~ 706 (953)
.++|.+.+.||+|+||.||+|++..+++.||||++... .....+.+.+|+.++++++||||+++++++..... ....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 46799999999999999999999998999999999643 33345778899999999999999999999754311 1113
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||++ ++|.+++. ..+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 103 ~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~k 166 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG------------LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELK 166 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEE
T ss_pred eEEEEecccc-CCHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEE
Confidence 4599999996 68888873 2489999999999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCC-CCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhh
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-SEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMA 865 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~ 865 (953)
|+|||+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+.......
T Consensus 167 l~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~ 240 (353)
T 3coi_A 167 ILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVT 240 (353)
T ss_dssp ECSTTCTTC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHH
T ss_pred EeecccccCCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHh
Confidence 9999999865321 223468999999999877 678999999999999999999999997532211 111111110
Q ss_pred -CCc-hhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 866 -LPD-HVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 866 -~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.+. .....+.... .......................++++.+++.+||+.||++|||++|+++
T Consensus 241 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 241 GVPGTEFVQKLNDKA---AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp CBCCHHHHTTCSCHH---HHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHhhHH---HHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 010 0000000000 00000000000000000011134567999999999999999999999986
No 260
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.5e-38 Score=347.09 Aligned_cols=255 Identities=21% Similarity=0.255 Sum_probs=198.3
Q ss_pred hcCCcccCcccccceeeEEEEEEc---CCCeEEEEEEeeccc----hhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILD---QGKTTVAVKVFNLLH----HGAFKSFIAECNTLKNI-RHRNLVKILTACSGVD 701 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 701 (953)
.++|++.+.||+|+||.||+|+.. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++..
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-- 130 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-- 130 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE--
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee--
Confidence 357999999999999999999984 466799999986321 23345677899999999 69999999998643
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE 781 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 781 (953)
....++||||+++|+|.+++.. ...+++.+++.++.||+.||+|||+. +|+||||||+|||++.
T Consensus 131 ---~~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~ 194 (355)
T 1vzo_A 131 ---ETKLHLILDYINGGELFTHLSQ----------RERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDS 194 (355)
T ss_dssp ---TTEEEEEECCCCSCBHHHHHHH----------HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred ---CceEEEEeecCCCCCHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECC
Confidence 4678999999999999999952 23589999999999999999999999 9999999999999999
Q ss_pred CCcEEEeccccceecCCCCCcccccccccccccccccccCCC--CCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHH
Q 043900 782 EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS--EVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLH 859 (953)
Q Consensus 782 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~ 859 (953)
++.+||+|||+++.+.... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||....... ...
T Consensus 195 ~~~~kl~DfG~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~ 272 (355)
T 1vzo_A 195 NGHVVLTDFGLSKEFVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQA 272 (355)
T ss_dssp TSCEEESCSSEEEECCGGG-GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHH
T ss_pred CCcEEEeeCCCCeecccCC-CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-hHH
Confidence 9999999999998764221 2223345699999999998863 57899999999999999999999997532221 111
Q ss_pred HHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-----CHHHHHHH
Q 043900 860 NFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-----NMTNVVRQ 932 (953)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~evl~~ 932 (953)
......... ... .+..++..+.+++.+||+.||++|| |++|+++.
T Consensus 273 ~~~~~~~~~------~~~----------------------~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 273 EISRRILKS------EPP----------------------YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp HHHHHHHHC------CCC----------------------CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred HHHHHHhcc------CCC----------------------CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 111110000 000 0012345688999999999999999 99999874
No 261
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=5.4e-37 Score=339.16 Aligned_cols=278 Identities=20% Similarity=0.256 Sum_probs=201.8
Q ss_pred hcCCcccCcccccceeeEEEEEE-cCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCC------CeeEEEeeeccccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGIL-DQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHR------NLVKILTACSGVDY 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~------niv~~~~~~~~~~~ 702 (953)
.++|++.+.||+|+||.||+|.+ ..+++.||||+++.. ....+.+.+|+++++.++|+ +++++++++.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~---- 87 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE---- 87 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE----
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc----
Confidence 45899999999999999999998 557789999999743 23456788999999988665 4999999864
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC-
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE- 781 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~- 781 (953)
..+..++||||+ +++|.+++.... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.
T Consensus 88 -~~~~~~lv~e~~-~~~l~~~l~~~~--------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~ 154 (339)
T 1z57_A 88 -HHGHICIVFELL-GLSTYDFIKENG--------FLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQS 154 (339)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTT--------TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCC
T ss_pred -cCCcEEEEEcCC-CCCHHHHHHhcC--------CCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEecc
Confidence 347899999999 889999986432 12588999999999999999999999 9999999999999987
Q ss_pred ------------------CCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh
Q 043900 782 ------------------EMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT 843 (953)
Q Consensus 782 ------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt 843 (953)
++.+||+|||.++..... .....||+.|+|||++.+..++.++|||||||++|||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 229 (339)
T 1z57_A 155 DYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 229 (339)
T ss_dssp CEEEEEC----CEEEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHh
Confidence 668999999999875422 223468999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCccHHHHHH--hhCCchhhhhcccc---------ccCCchh-hhhcccchhhhhhhhhHHHHHHHHHHH
Q 043900 844 RKKPVDSMFEGDMNLHNFAR--MALPDHVVDIVDST---------LLSDDED-LAVHGNQRQRQARINSKIECLVAMVRI 911 (953)
Q Consensus 844 g~~pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l 911 (953)
|+.||......+ ....... ...+.......... +...... ....................++++.++
T Consensus 230 g~~pf~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 308 (339)
T 1z57_A 230 GFTVFPTHDSKE-HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDL 308 (339)
T ss_dssp SSCSCCCSCHHH-HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHH
T ss_pred CCCCCCCCChHH-HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHH
Confidence 999997532221 1111111 11111111100000 0000000 000000000000111122456789999
Q ss_pred hhccccCCCCCCCCHHHHHH
Q 043900 912 GVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 912 ~~~cl~~dP~~RPt~~evl~ 931 (953)
+.+||+.||++|||++|+++
T Consensus 309 i~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 309 IQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHhCcCcccccCHHHHhc
Confidence 99999999999999999875
No 262
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.5e-37 Score=368.21 Aligned_cols=260 Identities=23% Similarity=0.335 Sum_probs=204.5
Q ss_pred hhcCCcccCcccccceeeEEEEEEcCC---CeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 629 ATDGFASANEIGVGSFGSVYKGILDQG---KTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 629 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
..++|++.+.||+|+||.||+|.+..+ ...||+|+++.. .....+.+.+|+.++++++||||+++++++.
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------ 461 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 461 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe------
Confidence 346788999999999999999998643 457999998743 3344578999999999999999999999863
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
++..++||||+++|+|.++++.. ...+++..++.++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 462 ~~~~~lv~E~~~~g~L~~~l~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~ 529 (656)
T 2j0j_A 462 ENPVWIIMELCTLGELRSFLQVR---------KFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDC 529 (656)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHT---------TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTE
T ss_pred cCceEEEEEcCCCCcHHHHHHhc---------cCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCC
Confidence 24579999999999999999632 23589999999999999999999999 9999999999999999999
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccHHHHHH
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~~~~~~ 863 (953)
+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |..||.+....+ ......
T Consensus 530 vkL~DFG~a~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~~~i~ 606 (656)
T 2j0j_A 530 VKLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIE 606 (656)
T ss_dssp EEECCCCCCCSCCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHH
T ss_pred EEEEecCCCeecCCCcc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH--HHHHHH
Confidence 99999999987643321 22233457889999999998899999999999999999997 999997532211 111110
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNI 939 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~ 939 (953)
.... . ..+..+++++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 607 ~~~~-----------~-------------------~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 607 NGER-----------L-------------------PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp HTCC-----------C-------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCC-----------C-------------------CCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 0000 0 00013356788999999999999999999999999998654
No 263
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=348.17 Aligned_cols=211 Identities=22% Similarity=0.307 Sum_probs=156.5
Q ss_pred cCCcc-cCcccccceeeEEEEEEc--CCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 631 DGFAS-ANEIGVGSFGSVYKGILD--QGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 631 ~~~~~-~~~ig~G~~g~Vy~~~~~--~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
+.|.+ .++||+|+||+||+|++. .+++.||+|+++... ....+.+|++++++++||||+++++++.. .....
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS---HADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCe
Confidence 34665 568999999999999976 356789999996432 23568899999999999999999999742 33567
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe----cCCC
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL----DEEM 783 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~ 783 (953)
.++||||++ |+|.+++....... .......+++..++.++.||+.||+|||+. +|+||||||+|||+ +.++
T Consensus 95 ~~lv~e~~~-~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 169 (405)
T 3rgf_A 95 VWLLFDYAE-HDLWHIIKFHRASK-ANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERG 169 (405)
T ss_dssp EEEEEECCS-EEHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTT
T ss_pred EEEEEeCCC-CCHHHHHHHhcccc-ccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCC
Confidence 899999996 58888775322110 011223589999999999999999999999 99999999999999 6778
Q ss_pred cEEEeccccceecCCCCC-cccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCCCCc
Q 043900 784 MAHVSDFGLARFLPLSPA-QTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf~~~ 851 (953)
.+||+|||+|+.+..... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||...
T Consensus 170 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 170 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred cEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 999999999987643211 1223345689999999998874 5899999999999999999999999754
No 264
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=3.5e-37 Score=334.82 Aligned_cols=258 Identities=22% Similarity=0.291 Sum_probs=193.5
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc--------
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD-------- 701 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-------- 701 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++.. ....+.+.+|+.++++++||||+++++++....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 46799999999999999999999988889999999643 345578899999999999999999999875421
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE 781 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 781 (953)
.......++||||+++|+|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~ 151 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSE---------NLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDE 151 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHS---------CGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECT
T ss_pred cccCCceEEEEecCCCCCHHHhhhcc---------ccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcC
Confidence 12346789999999999999999632 23578899999999999999999999 9999999999999999
Q ss_pred CCcEEEeccccceecCCCCC------------cccccccccccccccccccCCC-CCCcccchHHHHHHHHHHHhCCCCC
Q 043900 782 EMMAHVSDFGLARFLPLSPA------------QTSSIDAKGSIGYIAPEYGLGS-EVSINGDVYSYGILLLELVTRKKPV 848 (953)
Q Consensus 782 ~~~~kL~DfG~a~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDv~slG~vl~elltg~~pf 848 (953)
++.+||+|||.++....... ........||+.|+|||++.+. .++.++|||||||++|||++ ||
T Consensus 152 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~ 228 (303)
T 1zy4_A 152 SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PF 228 (303)
T ss_dssp TSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CC
T ss_pred CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---cc
Confidence 99999999999986642210 1122344589999999998765 78999999999999999998 55
Q ss_pred CCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHH
Q 043900 849 DSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTN 928 (953)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e 928 (953)
....... ......... ........ ....+..+.+++.+||+.||++|||++|
T Consensus 229 ~~~~~~~-~~~~~~~~~---------~~~~~~~~------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ 280 (303)
T 1zy4_A 229 STGMERV-NILKKLRSV---------SIEFPPDF------------------DDNKMKVEKKIIRLLIDHDPNKRPGART 280 (303)
T ss_dssp SSHHHHH-HHHHHHHST---------TCCCCTTC------------------CTTTSHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred CCchhHH-HHHHhcccc---------ccccCccc------------------cccchHHHHHHHHHHHhcCcccCcCHHH
Confidence 4211110 000000000 00000000 0123456889999999999999999999
Q ss_pred HHH
Q 043900 929 VVR 931 (953)
Q Consensus 929 vl~ 931 (953)
+++
T Consensus 281 ll~ 283 (303)
T 1zy4_A 281 LLN 283 (303)
T ss_dssp HHH
T ss_pred HhC
Confidence 986
No 265
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=5.9e-37 Score=337.30 Aligned_cols=258 Identities=18% Similarity=0.212 Sum_probs=175.4
Q ss_pred hhcCCcccC-cccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 629 ATDGFASAN-EIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 629 ~~~~~~~~~-~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
..++|.+.+ .||+|+||.||+|.+..+++.||||++.... .........++.++||||+++++++... ......
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 100 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENM-HHGKRC 100 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCce
Confidence 456888855 6999999999999999888899999996432 1222223345667999999999997543 223456
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC---CCc
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE---EMM 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~ 784 (953)
.++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~--------~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~ 169 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERG--------DQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAV 169 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC---------CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCC
T ss_pred EEEEEeccCCCCHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCce
Confidence 899999999999999996432 23689999999999999999999999 9999999999999976 456
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||+++..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........... ...
T Consensus 170 ~kl~Dfg~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~ 243 (336)
T 3fhr_A 170 LKLTDFGFAKETTQN----ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG--MKR 243 (336)
T ss_dssp EEECCCTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------
T ss_pred EEEeccccceecccc----ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh--HHH
Confidence 999999999876422 22234589999999999888999999999999999999999999975322211000 000
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.......... ......++.++.+++.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 244 RIRLGQYGFP-----------------------NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp -------CCC-----------------------TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred hhhccccccC-----------------------chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000000000 0000123556889999999999999999999997
No 266
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=347.82 Aligned_cols=319 Identities=18% Similarity=0.157 Sum_probs=219.2
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
+.++.++++++. +|..+. .++++|+|++|+|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 466777777775 554442 46777777777777666667777777777777777777666777777777777777777
Q ss_pred ccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccccccc
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPL 190 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 190 (953)
++++..+..|+++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++ ++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cCh
Confidence 7775555566777777777777777776667777777777777777777776666677777777777777777774 343
Q ss_pred ccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccc
Q 043900 191 DFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSL 270 (953)
Q Consensus 191 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l 270 (953)
..+..+++|+.|++++|++++..+..|..+++|+.|++++|...+..+.
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------------------------- 218 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP------------------------------- 218 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-------------------------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-------------------------------
Confidence 3334778888888888888877777888888888888888766543221
Q ss_pred cccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCC
Q 043900 271 TNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLR 350 (953)
Q Consensus 271 ~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 350 (953)
..... .+|+.|++++|++++..+..|..+++|+.|+|++|.|++..+..|..+++|+
T Consensus 219 ----------------------~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 219 ----------------------NCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275 (477)
T ss_dssp ----------------------TTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred ----------------------ccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC
Confidence 11111 2566677777777654445667777777777777777766666777777777
Q ss_pred eEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccC
Q 043900 351 ELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLT 407 (953)
Q Consensus 351 ~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 407 (953)
+|+|++|++++..|..|..+ .+++|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77777777766555555554 3455555556565555666777777888888887776
No 267
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.6e-37 Score=338.89 Aligned_cols=262 Identities=22% Similarity=0.360 Sum_probs=195.0
Q ss_pred CcCHHHHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc--chhhHHHHHHHHHHHhhcC--CCCeeEEEe
Q 043900 620 NISYQNLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL--HHGAFKSFIAECNTLKNIR--HRNLVKILT 695 (953)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~--h~niv~~~~ 695 (953)
.+.++.+....++|++.+.||+|+||.||+|.+.. ++.||+|++... .....+.+.+|++++++++ ||||+++++
T Consensus 17 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~ 95 (313)
T 3cek_A 17 NLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 95 (313)
T ss_dssp ---CCEEEETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEE
T ss_pred CCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCC-CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEE
Confidence 34444444556789999999999999999999876 568999999643 3445678899999999996 599999999
Q ss_pred eecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCC
Q 043900 696 ACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPS 775 (953)
Q Consensus 696 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 775 (953)
++.. ....++||| +.+++|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+
T Consensus 96 ~~~~-----~~~~~lv~e-~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~ 156 (313)
T 3cek_A 96 YEIT-----DQYIYMVME-CGNIDLNSWLKK----------KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPA 156 (313)
T ss_dssp EEEC-----SSEEEEEEC-CCSEEHHHHHHH----------CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGG
T ss_pred Eeec-----CCEEEEEEe-cCCCcHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcc
Confidence 9643 467899999 558899999953 23588999999999999999999999 9999999999
Q ss_pred CeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCC-----------CCCCcccchHHHHHHHHHHHhC
Q 043900 776 NVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG-----------SEVSINGDVYSYGILLLELVTR 844 (953)
Q Consensus 776 NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDv~slG~vl~elltg 844 (953)
||++++ +.+||+|||+++...............||+.|+|||++.+ ..++.++||||||+++|||++|
T Consensus 157 NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g 235 (313)
T 3cek_A 157 NFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 235 (313)
T ss_dssp GEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHS
T ss_pred cEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhC
Confidence 999964 8999999999987654333223334568999999999875 4788899999999999999999
Q ss_pred CCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC
Q 043900 845 KKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM 924 (953)
Q Consensus 845 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP 924 (953)
+.||............ ..+........ ...+.++.+++.+||+.||++||
T Consensus 236 ~~pf~~~~~~~~~~~~------------~~~~~~~~~~~------------------~~~~~~l~~li~~~l~~dp~~Rp 285 (313)
T 3cek_A 236 KTPFQQIINQISKLHA------------IIDPNHEIEFP------------------DIPEKDLQDVLKCCLKRDPKQRI 285 (313)
T ss_dssp SCTTTTCCSHHHHHHH------------HHCTTSCCCCC------------------CCSCHHHHHHHHHHTCSSTTTSC
T ss_pred CCchhhHHHHHHHHHH------------HHhcccccCCc------------------ccchHHHHHHHHHHccCCcccCc
Confidence 9999753221111111 11110000000 01134688999999999999999
Q ss_pred CHHHHHHH
Q 043900 925 NMTNVVRQ 932 (953)
Q Consensus 925 t~~evl~~ 932 (953)
|++|+++.
T Consensus 286 s~~ell~h 293 (313)
T 3cek_A 286 SIPELLAH 293 (313)
T ss_dssp CHHHHHTS
T ss_pred CHHHHhcC
Confidence 99999874
No 268
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=8.1e-37 Score=342.79 Aligned_cols=203 Identities=26% Similarity=0.327 Sum_probs=170.4
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CC-----CeeEEEeeecccc
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HR-----NLVKILTACSGVD 701 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~~~~~~~~~~ 701 (953)
...++|++.+.||+|+||+||+|++..+++.||||+++.. ......+..|+.+++.++ |+ +++++++++..
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~-- 127 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF-- 127 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE--
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc--
Confidence 3467899999999999999999999999999999999743 234566778888888884 55 49999998643
Q ss_pred cCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEec-
Q 043900 702 YQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLD- 780 (953)
Q Consensus 702 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~- 780 (953)
.+..++||||++ |+|.+++..... ..+++..+..++.|++.||+|||++ ..+|+||||||+|||++
T Consensus 128 ---~~~~~lv~e~~~-~~L~~~l~~~~~--------~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~ 194 (382)
T 2vx3_A 128 ---RNHLCLVFEMLS-YNLYDLLRNTNF--------RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCN 194 (382)
T ss_dssp ---TTEEEEEEECCC-CBHHHHHHHTTT--------SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESS
T ss_pred ---CCceEEEEecCC-CCHHHHHhhcCc--------CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEec
Confidence 378999999995 599999864322 2589999999999999999999952 23999999999999995
Q ss_pred -CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCc
Q 043900 781 -EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 781 -~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~ 851 (953)
.++.+||+|||+|+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 195 ~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 195 PKRSAIKIVDFGSSCQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TTSCCEEECCCTTCEETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CCCCcEEEEeccCceecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 5778999999999876432 22356899999999999999999999999999999999999999864
No 269
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=5.9e-37 Score=330.01 Aligned_cols=253 Identities=23% Similarity=0.278 Sum_probs=200.3
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCC
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGN 705 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 705 (953)
...++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++. ..
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 93 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DS 93 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CS
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----CC
Confidence 34568999999999999999999999888899999996432 334678899999999999999999999964 34
Q ss_pred CceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC---
Q 043900 706 DFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE--- 782 (953)
Q Consensus 706 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~--- 782 (953)
...++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +++||||||+||+++.+
T Consensus 94 ~~~~lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~ 160 (287)
T 2wei_A 94 SSFYIVGELYTGGELFDEIIK----------RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKD 160 (287)
T ss_dssp SEEEEEECCCCSCBHHHHHHH----------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTT
T ss_pred CeEEEEEEccCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCc
Confidence 788999999999999998852 23589999999999999999999999 99999999999999754
Q ss_pred CcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHH
Q 043900 783 MMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFA 862 (953)
Q Consensus 783 ~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~ 862 (953)
+.+||+|||++....... ......|++.|+|||++.+ .++.++||||||+++|+|++|+.||......+ .....
T Consensus 161 ~~~kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~ 234 (287)
T 2wei_A 161 CDIKIIDFGLSTCFQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD--ILKRV 234 (287)
T ss_dssp CCEEECSTTGGGTBCCCS---SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHH
T ss_pred ccEEEeccCcceeecCCC---ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH--HHHHH
Confidence 479999999998664322 2223458999999999876 48999999999999999999999997532111 11100
Q ss_pred HhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 863 RMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 863 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... ..... ......++.++.+++.+||+.||++|||++|+++
T Consensus 235 ~~~-----------~~~~~----------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 235 ETG-----------KYAFD----------------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHC-----------CCCCC----------------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HcC-----------CCCCC----------------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 000 00000 0000123456889999999999999999999987
No 270
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=341.20 Aligned_cols=264 Identities=22% Similarity=0.300 Sum_probs=197.0
Q ss_pred HHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 627 YNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 627 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
....++|++.+.||+|+||.||+|++.+ .||+|+++... ....+.+.+|+.++++++||||+++++++..
T Consensus 29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----- 100 (319)
T 2y4i_B 29 DIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS----- 100 (319)
T ss_dssp SSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC-----
T ss_pred cCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec-----
Confidence 3345789999999999999999999865 39999986432 2334567789999999999999999999653
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
....++||||+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++ ++.
T Consensus 101 ~~~~~iv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~ 167 (319)
T 2y4i_B 101 PPHLAIITSLCKGRTLYSVVRDA---------KIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGK 167 (319)
T ss_dssp SSCEEEECBCCCSEEHHHHTTSS---------CCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---C
T ss_pred CCceEEEeecccCCcHHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCC
Confidence 36789999999999999999632 23588999999999999999999999 999999999999998 679
Q ss_pred EEEeccccceecCCCC---CcccccccccccccccccccCC---------CCCCcccchHHHHHHHHHHHhCCCCCCCcc
Q 043900 785 AHVSDFGLARFLPLSP---AQTSSIDAKGSIGYIAPEYGLG---------SEVSINGDVYSYGILLLELVTRKKPVDSMF 852 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~sDv~slG~vl~elltg~~pf~~~~ 852 (953)
+||+|||+++...... .........|++.|+|||++.+ ..++.++||||||+++|||++|+.||....
T Consensus 168 ~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 247 (319)
T 2y4i_B 168 VVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP 247 (319)
T ss_dssp CEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC
T ss_pred EEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999987653211 1122233458999999999865 457899999999999999999999997532
Q ss_pred cCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHH
Q 043900 853 EGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQ 932 (953)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~ 932 (953)
... ......... .+.... ..++.++.+++.+||+.||++|||++|+++.
T Consensus 248 ~~~--~~~~~~~~~--------~~~~~~---------------------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~ 296 (319)
T 2y4i_B 248 AEA--IIWQMGTGM--------KPNLSQ---------------------IGMGKEISDILLFCWAFEQEERPTFTKLMDM 296 (319)
T ss_dssp HHH--HHHHHHTTC--------CCCCCC---------------------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHH
T ss_pred HHH--HHHHhccCC--------CCCCCc---------------------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence 211 100000000 000000 0123458899999999999999999999999
Q ss_pred HHHHHHHhcc
Q 043900 933 LQSIKNILLG 942 (953)
Q Consensus 933 L~~i~~~~~~ 942 (953)
|+++.+....
T Consensus 297 l~~l~~~~~~ 306 (319)
T 2y4i_B 297 LEKLPKRNRR 306 (319)
T ss_dssp HTTC------
T ss_pred HHHHHHhhcc
Confidence 9998776543
No 271
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=9.1e-37 Score=342.13 Aligned_cols=284 Identities=19% Similarity=0.267 Sum_probs=202.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-----------CCCeeEEEeeec
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-----------HRNLVKILTACS 698 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~~~~~~~ 698 (953)
.++|++.+.||+|+||+||+|++..+++.||||+++.. ....+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 45799999999999999999999988999999999743 234567888999998886 899999999975
Q ss_pred ccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeE
Q 043900 699 GVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVL 778 (953)
Q Consensus 699 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 778 (953)
.. .......++||||+ +++|.+++..... ..+++..++.++.||+.||+|||+++ +|+||||||+||+
T Consensus 97 ~~-~~~~~~~~lv~e~~-~~~L~~~~~~~~~--------~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIl 164 (373)
T 1q8y_A 97 HK-GPNGVHVVMVFEVL-GENLLALIKKYEH--------RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVL 164 (373)
T ss_dssp EE-ETTEEEEEEEECCC-CEEHHHHHHHTTT--------SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEE
T ss_pred cc-CCCCceEEEEEecC-CCCHHHHHHHhhc--------cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeE
Confidence 43 12334789999999 8999999964322 25899999999999999999999842 8999999999999
Q ss_pred ec------CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcc
Q 043900 779 LD------EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMF 852 (953)
Q Consensus 779 l~------~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~ 852 (953)
++ ..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 165 l~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 239 (373)
T 1q8y_A 165 MEIVDSPENLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE 239 (373)
T ss_dssp EEEEETTTTEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred EeccCCCcCcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCc
Confidence 94 4458999999999876432 223468999999999999999999999999999999999999997543
Q ss_pred cCC-----ccHHHHHHhh--CCchhh-------hhcccc-ccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhcccc
Q 043900 853 EGD-----MNLHNFARMA--LPDHVV-------DIVDST-LLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSM 917 (953)
Q Consensus 853 ~~~-----~~~~~~~~~~--~~~~~~-------~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~ 917 (953)
... .......... .+.... ...... ...........................+.++.+++.+||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~ 319 (373)
T 1q8y_A 240 GHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQ 319 (373)
T ss_dssp -----CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGC
T ss_pred ccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhc
Confidence 211 0111111110 011000 000000 0000000000000000111122234677889999999999
Q ss_pred CCCCCCCCHHHHHH
Q 043900 918 ESPGDRMNMTNVVR 931 (953)
Q Consensus 918 ~dP~~RPt~~evl~ 931 (953)
.||++|||++|+++
T Consensus 320 ~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 320 LDPRKRADAGGLVN 333 (373)
T ss_dssp SSTTTCBCHHHHHT
T ss_pred cCccccCCHHHHhh
Confidence 99999999999986
No 272
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=2.3e-36 Score=336.48 Aligned_cols=278 Identities=20% Similarity=0.269 Sum_probs=199.0
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCC-eEEEEEEeeccchhhHHHHHHHHHHHhhcCCCC------eeEEEeeeccccc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGK-TTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRN------LVKILTACSGVDY 702 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~ 702 (953)
.++|++.+.||+|+||+||+|.+..++ +.||+|+++.. ....+.+.+|+.++++++|++ ++.+++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~---- 92 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFN---- 92 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEE----
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeee----
Confidence 468999999999999999999997665 78999999743 234567888999999997665 888888854
Q ss_pred CCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEe---
Q 043900 703 QGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLL--- 779 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll--- 779 (953)
..+..++||||+ ++++.+++.... ...+++.+++.++.||+.||+|||+. +|+||||||+||++
T Consensus 93 -~~~~~~lv~e~~-~~~l~~~l~~~~--------~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~ 159 (355)
T 2eu9_A 93 -FHGHMCIAFELL-GKNTFEFLKENN--------FQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNS 159 (355)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTT--------TCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCC
T ss_pred -eCCeEEEEEecc-CCChHHHHHhcc--------CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecc
Confidence 347899999999 667777664322 13589999999999999999999999 99999999999999
Q ss_pred ----------------cCCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHh
Q 043900 780 ----------------DEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVT 843 (953)
Q Consensus 780 ----------------~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~ellt 843 (953)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 234 (355)
T 2eu9_A 160 EFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 234 (355)
T ss_dssp CEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHh
Confidence 56789999999999875322 223468999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCccHHHHHH--hhCCchhhhhccc---------cccCCchhh-hhcccchhhhhhhhhHHHHHHHHHHH
Q 043900 844 RKKPVDSMFEGDMNLHNFAR--MALPDHVVDIVDS---------TLLSDDEDL-AVHGNQRQRQARINSKIECLVAMVRI 911 (953)
Q Consensus 844 g~~pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l 911 (953)
|+.||......+ ....... ...+......... .+....... ...................+.++.++
T Consensus 235 g~~pf~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 313 (355)
T 2eu9_A 235 GFTLFQTHENRE-HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDL 313 (355)
T ss_dssp SSCSCCCSSHHH-HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHH
T ss_pred CCCCCCCCCHHH-HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHH
Confidence 999997532221 1111111 1111111100000 000000000 00000000000011122446689999
Q ss_pred hhccccCCCCCCCCHHHHHH
Q 043900 912 GVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 912 ~~~cl~~dP~~RPt~~evl~ 931 (953)
+.+||+.||++|||++|+++
T Consensus 314 i~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 314 MRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHhcCChhhCcCHHHHhc
Confidence 99999999999999999974
No 273
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=334.10 Aligned_cols=246 Identities=21% Similarity=0.275 Sum_probs=190.7
Q ss_pred HHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch------hhHHHHHHHHHHHhhc----CCCCeeEEE
Q 043900 625 NLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH------GAFKSFIAECNTLKNI----RHRNLVKIL 694 (953)
Q Consensus 625 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~~~ 694 (953)
+.....++|++.+.||+|+||.||+|++..+++.||+|+++.... .....+.+|+.++.++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 444556789999999999999999999988888999999964322 1223456789999888 899999999
Q ss_pred eeecccccCCCCceeEEEee-ccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCC
Q 043900 695 TACSGVDYQGNDFKALVFEF-MQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLK 773 (953)
Q Consensus 695 ~~~~~~~~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 773 (953)
+++. ..+..++|||| +.+++|.+++.. ...+++..++.++.|++.||+|||+. +|+|||||
T Consensus 105 ~~~~-----~~~~~~~v~e~~~~~~~L~~~l~~----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk 166 (312)
T 2iwi_A 105 DWFE-----TQEGFMLVLERPLPAQDLFDYITE----------KGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIK 166 (312)
T ss_dssp EEC----------CEEEEECCSSEEEHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCS
T ss_pred EEEe-----cCCeEEEEEEecCCCCCHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCC
Confidence 9953 34678999999 789999999953 23589999999999999999999999 99999999
Q ss_pred CCCeEec-CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCCC-cccchHHHHHHHHHHHhCCCCCCCc
Q 043900 774 PSNVLLD-EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVS-INGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 774 p~NIll~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDv~slG~vl~elltg~~pf~~~ 851 (953)
|+||+++ .++.+||+|||.++...... .....|+..|+|||++.+..+. .++||||||+++|||++|+.||...
T Consensus 167 p~Nil~~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 242 (312)
T 2iwi_A 167 DENILIDLRRGCAKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD 242 (312)
T ss_dssp GGGEEEETTTTEEEECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred hhhEEEeCCCCeEEEEEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh
Confidence 9999999 88999999999998764322 2344589999999998777664 5899999999999999999999642
Q ss_pred ccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 852 FEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
. ....... .. ...++.++.+++.+||+.||++|||++|+++
T Consensus 243 ~-------~~~~~~~----------~~----------------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 243 Q-------EILEAEL----------HF----------------------PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp H-------HHHHTCC----------CC----------------------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred H-------HHhhhcc----------CC----------------------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1 0000000 00 0022456889999999999999999999987
No 274
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=4.6e-37 Score=336.01 Aligned_cols=243 Identities=21% Similarity=0.244 Sum_probs=197.2
Q ss_pred HhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch------hhHHHHHHHHHHHhhcC--CCCeeEEEeeecc
Q 043900 628 NATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH------GAFKSFIAECNTLKNIR--HRNLVKILTACSG 699 (953)
Q Consensus 628 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~ 699 (953)
...++|++.+.||+|+||.||+|++..+++.||||+++.... .....+.+|+.++++++ ||||+++++++.
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~- 118 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE- 118 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE-
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe-
Confidence 345689999999999999999999999999999999964322 12245678999999995 599999999964
Q ss_pred cccCCCCceeEEEeeccC-CchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeE
Q 043900 700 VDYQGNDFKALVFEFMQN-RSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVL 778 (953)
Q Consensus 700 ~~~~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 778 (953)
..+..++||||+.+ ++|.+++.. ...+++..++.++.|++.||+|||+. +|+||||||+||+
T Consensus 119 ----~~~~~~lv~e~~~~~~~L~~~l~~----------~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIl 181 (320)
T 3a99_A 119 ----RPDSFVLILERPEPVQDLFDFITE----------RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENIL 181 (320)
T ss_dssp ----CSSEEEEEEECCSSEEEHHHHHHH----------HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEE
T ss_pred ----cCCcEEEEEEcCCCCccHHHHHhc----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEE
Confidence 34778999999976 899999853 23589999999999999999999999 9999999999999
Q ss_pred ec-CCCcEEEeccccceecCCCCCcccccccccccccccccccCCCCC-CcccchHHHHHHHHHHHhCCCCCCCcccCCc
Q 043900 779 LD-EEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEV-SINGDVYSYGILLLELVTRKKPVDSMFEGDM 856 (953)
Q Consensus 779 l~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDv~slG~vl~elltg~~pf~~~~~~~~ 856 (953)
++ +++.+||+|||+++..... ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||....
T Consensus 182 l~~~~~~~kL~Dfg~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~---- 253 (320)
T 3a99_A 182 IDLNRGELKLIDFGSGALLKDT----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE---- 253 (320)
T ss_dssp EETTTTEEEECCCTTCEECCSS----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----
T ss_pred EeCCCCCEEEeeCccccccccc----cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh----
Confidence 99 7889999999999876432 2223458999999999877765 688999999999999999999996421
Q ss_pred cHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 857 NLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
....... ... ..+++++.+++.+||+.||++|||++|+++
T Consensus 254 ---~~~~~~~----------~~~----------------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 254 ---EIIRGQV----------FFR----------------------QRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ---HHHHCCC----------CCS----------------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---hhhcccc----------ccc----------------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0000000 000 012456889999999999999999999986
No 275
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.1e-36 Score=354.44 Aligned_cols=278 Identities=21% Similarity=0.245 Sum_probs=201.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccc-cCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVD-YQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|.+..+++.||||+++.. .....+.+.+|++++++++||||+++++++.... +..++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 36899999999999999999999988889999998643 4445678999999999999999999999975422 233677
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc---
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM--- 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--- 784 (953)
.++||||+++|+|.+++..... ...+++..++.++.|++.||+|||+. ||+||||||+||+++.++.
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~-------~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~ 162 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFEN-------CCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLI 162 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSC-------TTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCE
T ss_pred EEEEEEeCCCCCHHHHHHhccc-------CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCcee
Confidence 8999999999999999964322 23588889999999999999999999 9999999999999997764
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||.++...... ......||+.|+|||++.+..++.++|||||||++|||++|..||..... ...|...
T Consensus 163 vKL~DFG~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~----~~~~~~~ 235 (676)
T 3qa8_A 163 HKIIDLGYAKELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ----PVQWHGK 235 (676)
T ss_dssp EEECSCCCCCBTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH----HHHSSTT
T ss_pred EEEccccccccccccc---ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc----hhhhhhh
Confidence 9999999998764332 22345699999999999999999999999999999999999999975211 1111111
Q ss_pred hCCchhhh-hccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHH
Q 043900 865 ALPDHVVD-IVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVV 930 (953)
Q Consensus 865 ~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl 930 (953)
........ .......+... .....+.+ .......++.+.+++.+||++||++|||++|++
T Consensus 236 i~~~~~~~~~~~~~l~g~~~---~~~~lp~p---~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 236 VREKSNEHIVVYDDLTGAVK---FSSVLPTP---NHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp CC------CCSCCCCSSSCC---CCSSSCCS---CCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred hhcccchhhhhhhhhccccc---cccccCCc---hhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 10000000 00000000000 00000000 001123567899999999999999999999854
No 276
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=7.4e-37 Score=335.95 Aligned_cols=259 Identities=21% Similarity=0.251 Sum_probs=177.2
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc-hhhHHHHHHHHH-HHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH-HGAFKSFIAECN-TLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|.+..+++.||||+++... ......+..|+. +++.++||||+++++++.. .+.
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-----~~~ 95 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-----EGD 95 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-----SSE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-----CCc
Confidence 367899999999999999999999888999999997543 333455666666 6777899999999999643 478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.++||||+++ +|.+++..... .....+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||
T Consensus 96 ~~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl 167 (327)
T 3aln_A 96 CWICMELMST-SFDKFYKYVYS-----VLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKL 167 (327)
T ss_dssp EEEEECCCSE-EHHHHHHHHHH-----TTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEE
T ss_pred eEEEEeecCC-ChHHHHHHHHh-----hhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEE
Confidence 8999999975 88777742111 1134689999999999999999999984 28999999999999999999999
Q ss_pred eccccceecCCCCCccccccccccccccccccc----CCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHH
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYG----LGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFAR 863 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~ 863 (953)
+|||+++...... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||........ ...
T Consensus 168 ~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~----~~~ 240 (327)
T 3aln_A 168 CDFGISGQLVDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD----QLT 240 (327)
T ss_dssp CCCSSSCC---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------C
T ss_pred ccCCCceeccccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH----HHH
Confidence 9999998664322 22233589999999998 566789999999999999999999999975321100 000
Q ss_pred hhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 864 MALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 864 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
....... ..+... ....+++++.+++.+||+.||++|||++|+++
T Consensus 241 ~~~~~~~-----~~~~~~------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 241 QVVKGDP-----PQLSNS------------------EEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCCCSCC-----CCCCCC------------------SSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHhcCCC-----CCCCCc------------------ccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 0000000 000000 00123456899999999999999999999976
No 277
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=330.65 Aligned_cols=252 Identities=22% Similarity=0.267 Sum_probs=177.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch-h-hHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH-G-AFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|++..+++.||||+++.... . ..+.+..+..+++.++||||+++++++. .++.
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~ 98 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----TNTD 98 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----cCCc
Confidence 4678999999999999999999998888999999975432 2 2334445555778889999999999964 3478
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhh-CCCCCeEeecCCCCCeEecCCCcEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHH-DCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
.++||||+ ++.+..+.... ...+++..++.++.|++.||+|||+ . +|+||||||+||+++.++.+|
T Consensus 99 ~~lv~e~~-~~~~~~l~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~k 165 (318)
T 2dyl_A 99 VFIAMELM-GTCAEKLKKRM---------QGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIK 165 (318)
T ss_dssp EEEEECCC-SEEHHHHHHHH---------TSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEE
T ss_pred EEEEEecc-CCcHHHHHHHh---------ccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEE
Confidence 99999999 55555554311 2358999999999999999999998 6 899999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccC-----CCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHH
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGL-----GSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNF 861 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~ 861 (953)
|+|||.+....... ......||+.|+|||++. +..++.++|||||||++|||++|+.||.............
T Consensus 166 l~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~ 242 (318)
T 2dyl_A 166 LCDFGISGRLVDDK---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKV 242 (318)
T ss_dssp ECCCTTC-----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHH
T ss_pred EEECCCchhccCCc---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHH
Confidence 99999997654322 222345899999999984 5578899999999999999999999997532211111111
Q ss_pred HHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 862 ARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.... +. .... ...++.++.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~-~~--------~~~~--------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 243 LQEE-PP--------LLPG--------------------HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp HHSC-CC--------CCCS--------------------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred hccC-CC--------CCCc--------------------cCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 1100 00 0000 0023456889999999999999999999987
No 278
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.1e-35 Score=328.38 Aligned_cols=312 Identities=21% Similarity=0.214 Sum_probs=168.8
Q ss_pred CCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccccee
Q 043900 26 NLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHL 105 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (953)
.+.++++|++++|.++.+.+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34555666666666665444445555666666666666654444455555555555555555554445555555555555
Q ss_pred eccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccc
Q 043900 106 SVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 106 ~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
+|++|+++...+..|+++++|++|++++|++++..++.|..+++|++|++++|++++. .+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~---------------- 183 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS---------------- 183 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGG----------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccc----------------
Confidence 5555555533333345555555555555555544444455555555555555544421 122
Q ss_pred cccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCccc
Q 043900 186 GVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLN 265 (953)
Q Consensus 186 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~ 265 (953)
.+++|+.|++++|.+++ +...++|+.|
T Consensus 184 ---------~l~~L~~L~l~~n~l~~-----~~~~~~L~~L--------------------------------------- 210 (390)
T 3o6n_A 184 ---------LIPSLFHANVSYNLLST-----LAIPIAVEEL--------------------------------------- 210 (390)
T ss_dssp ---------GCTTCSEEECCSSCCSE-----EECCSSCSEE---------------------------------------
T ss_pred ---------cccccceeecccccccc-----cCCCCcceEE---------------------------------------
Confidence 23344444444443331 1111233333
Q ss_pred ccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccC
Q 043900 266 FLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGE 345 (953)
Q Consensus 266 ~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 345 (953)
++++|.+..... ...++|+.|++++|.+++. ..+..
T Consensus 211 ---------------------------------------~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 211 ---------------------------------------DASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp ---------------------------------------ECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred ---------------------------------------ECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC
Confidence 333333332211 1124555556666655532 45566
Q ss_pred CCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeee
Q 043900 346 LQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLD 425 (953)
Q Consensus 346 l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ 425 (953)
+++|++|+|++|.+++ ..|..|..+++|+.|+|++|++++
T Consensus 247 l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~----------------- 286 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEK-----------------------IMYHPFVKMQRLERLYISNNRLVA----------------- 286 (390)
T ss_dssp CTTCSEEECCSSCCCE-----------------------EESGGGTTCSSCCEEECCSSCCCE-----------------
T ss_pred CCCccEEECCCCcCCC-----------------------cChhHccccccCCEEECCCCcCcc-----------------
Confidence 6666666666665543 334555566666666666666651
Q ss_pred ccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccc
Q 043900 426 LSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSG 505 (953)
Q Consensus 426 ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 505 (953)
+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|++. | +..+++|+.|+|++|++++
T Consensus 287 ---------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 287 ---------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ---------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ---------cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 1122344566777777777776 5566667777777777777777743 3 6677788888888888875
Q ss_pred c
Q 043900 506 K 506 (953)
Q Consensus 506 ~ 506 (953)
.
T Consensus 354 ~ 354 (390)
T 3o6n_A 354 N 354 (390)
T ss_dssp H
T ss_pred h
Confidence 3
No 279
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5.9e-36 Score=340.77 Aligned_cols=257 Identities=21% Similarity=0.266 Sum_probs=182.9
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCcee
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
+.|.+.+.||+|+||+||.+... +++.||||++... ..+.+.+|+++++++ +||||+++++++. .....+
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~-~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~-----~~~~~~ 85 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSF-QGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSET-----TDRFLY 85 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEES-SSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEE-----CSSEEE
T ss_pred heeeccCeEeeCCCeEEEEEEEE-CCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCeEE
Confidence 34556788999999999876544 4569999998643 235678899999887 8999999999853 447899
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCC-------
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEE------- 782 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~------- 782 (953)
+||||++ |+|.+++....... ......++..++.++.||+.||+|||+. +|+||||||+|||++.+
T Consensus 86 lv~E~~~-gsL~~~l~~~~~~~---~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~ 158 (434)
T 2rio_A 86 IALELCN-LNLQDLVESKNVSD---ENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQ 158 (434)
T ss_dssp EEECCCS-EEHHHHHHTC---------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCC
T ss_pred EEEecCC-CCHHHHHhccCCCc---hhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCccccccc
Confidence 9999995 69999996443220 0011123445688999999999999999 99999999999999754
Q ss_pred ------CcEEEeccccceecCCCCCc--ccccccccccccccccccCC-------CCCCcccchHHHHHHHHHHHh-CCC
Q 043900 783 ------MMAHVSDFGLARFLPLSPAQ--TSSIDAKGSIGYIAPEYGLG-------SEVSINGDVYSYGILLLELVT-RKK 846 (953)
Q Consensus 783 ------~~~kL~DfG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDv~slG~vl~ellt-g~~ 846 (953)
+.+||+|||+++........ .......||+.|+|||++.+ ..++.++|||||||++|||+| |+.
T Consensus 159 ~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~ 238 (434)
T 2rio_A 159 QTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKH 238 (434)
T ss_dssp TTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCC
T ss_pred ccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCC
Confidence 48999999999987543221 12234569999999999876 678999999999999999999 999
Q ss_pred CCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCH
Q 043900 847 PVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNM 926 (953)
Q Consensus 847 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 926 (953)
||....... ............ . .......+++++.+++.+||+.||++|||+
T Consensus 239 Pf~~~~~~~---~~i~~~~~~~~~-------~------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~ 290 (434)
T 2rio_A 239 PFGDKYSRE---SNIIRGIFSLDE-------M------------------KCLHDRSLIAEATDLISQMIDHDPLKRPTA 290 (434)
T ss_dssp TTCSTTTHH---HHHHHTCCCCCC-------C------------------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCH
T ss_pred CCCCchhhH---HHHhcCCCCccc-------c------------------cccccccchHHHHHHHHHHhhCChhhCCCH
Confidence 997532211 111111100000 0 000112456789999999999999999999
Q ss_pred HHHHH
Q 043900 927 TNVVR 931 (953)
Q Consensus 927 ~evl~ 931 (953)
.|+++
T Consensus 291 ~eil~ 295 (434)
T 2rio_A 291 MKVLR 295 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99985
No 280
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=1.2e-35 Score=318.30 Aligned_cols=239 Identities=11% Similarity=0.071 Sum_probs=184.3
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCC
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 706 (953)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.++++++||||+++++++.. .+
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~~ 104 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-----RA 104 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TT
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-----CC
Confidence 367999999999999999999999888999999997432 3345788999999999999999999999643 47
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..++||||+++++|.++++. .....++.+|+.|++.||+|||+. ||+||||||+||+++.++.+|
T Consensus 105 ~~~lv~e~~~g~~L~~~l~~------------~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~k 169 (286)
T 3uqc_A 105 GGLVVAEWIRGGSLQEVADT------------SPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVV 169 (286)
T ss_dssp EEEEEEECCCEEEHHHHHTT------------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEE
T ss_pred cEEEEEEecCCCCHHHHHhc------------CCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEE
Confidence 79999999999999999842 135557889999999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMAL 866 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~ 866 (953)
|+++| |++ .++.++|||||||++|||+||+.||......+...
T Consensus 170 l~~~~----------------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~-------- 212 (286)
T 3uqc_A 170 LAYPA----------------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA-------- 212 (286)
T ss_dssp ECSCC----------------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE--------
T ss_pred EEecc----------------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH--------
Confidence 98543 333 36889999999999999999999997633221000
Q ss_pred CchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHHhcccc
Q 043900 867 PDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVRQLQSIKNILLGHR 944 (953)
Q Consensus 867 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~~L~~i~~~~~~~~ 944 (953)
. .......... .. ......+++++.+++.+||+.||++| |++|+++.|+++........
T Consensus 213 -----~-~~~~~~~~~~---------~~---~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~~~ 271 (286)
T 3uqc_A 213 -----P-AERDTAGQPI---------EP---ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVADRTE 271 (286)
T ss_dssp -----E-CCBCTTSCBC---------CH---HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC------
T ss_pred -----H-HHHHhccCCC---------Ch---hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCccC
Confidence 0 0000000000 00 00011345678999999999999999 99999999999876655443
No 281
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-34 Score=345.11 Aligned_cols=343 Identities=20% Similarity=0.204 Sum_probs=190.2
Q ss_pred cccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEec
Q 043900 100 SKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDA 179 (953)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 179 (953)
.+++.|++++|.+....+..|+++++|++|+|++|.|++..|..|+.+++|++|+|++|.|++..|..|.++++|+.|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444444444444333333444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCC
Q 043900 180 GMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSR 259 (953)
Q Consensus 180 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~ 259 (953)
++|.++ .+|..++..+++|++|+|++|.+++..|..|+++++|+.|++++|.+++.+.
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------- 188 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--------------------- 188 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---------------------
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---------------------
Confidence 444444 3333333355556666666666665666666666666666666666653210
Q ss_pred CCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccC
Q 043900 260 GHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTI 339 (953)
Q Consensus 260 ~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 339 (953)
..+ ++|+.|++++|.+++ +...++|+.|++++|.++...
T Consensus 189 -----------------------------------~~l-~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 189 -----------------------------------SLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp -----------------------------------GGC-TTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEE
T ss_pred -----------------------------------hhh-hhhhhhhcccCcccc-----ccCCchhheeeccCCcccccc
Confidence 000 234444555444432 122234444555554444222
Q ss_pred CcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccc
Q 043900 340 PPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSW 419 (953)
Q Consensus 340 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 419 (953)
+..+ ++|+.|+|++|.+++ +..+..+++|+.|+|++|.+
T Consensus 228 ~~~~---~~L~~L~L~~n~l~~-------------------------~~~l~~l~~L~~L~Ls~N~l------------- 266 (597)
T 3oja_B 228 GPVN---VELTILKLQHNNLTD-------------------------TAWLLNYPGLVEVDLSYNEL------------- 266 (597)
T ss_dssp CSCC---SCCCEEECCSSCCCC-------------------------CGGGGGCTTCSEEECCSSCC-------------
T ss_pred cccC---CCCCEEECCCCCCCC-------------------------ChhhccCCCCCEEECCCCcc-------------
Confidence 1111 234444444443331 23344444444444444444
Q ss_pred cceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECC
Q 043900 420 LLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLS 499 (953)
Q Consensus 420 ~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 499 (953)
++..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 267 ------------~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 267 ------------EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp ------------CEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred ------------CCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence 44456667777788888888888874 5666777888888888888887 567777888888888888
Q ss_pred CCcccccCCccccccccCceEeccCCcCcccCCCCCcccccccccccCCcCCCCCCCCCCCCccc
Q 043900 500 QNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEGVFKNATITSVLGNLKLCGGIPEFQLPTCI 564 (953)
Q Consensus 500 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~~~~~~~~c~ 564 (953)
+|++++. | +..+++|+.|++++|++++..+ ...+.......+.++...|+.........|.
T Consensus 333 ~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~cc 393 (597)
T 3oja_B 333 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLCC 393 (597)
T ss_dssp SSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTTCEEETTEEE
T ss_pred CCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcchhccCCccc
Confidence 8888754 3 5567788888888888887542 2234455556678888999976654444453
No 282
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-35 Score=354.10 Aligned_cols=247 Identities=21% Similarity=0.297 Sum_probs=196.7
Q ss_pred hcCCcccCcccccceeeEEEEEEcC-CCeEEEEEEeecc-chhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQ-GKTTVAVKVFNLL-HHGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|++.+.||+|+||.||+|.+.. +++.||||++... .......+.+|++++++++||||++++++|..........
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 3689999999999999999999976 6789999998643 3345567899999999999999999999986543222223
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEE
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHV 787 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 787 (953)
.|+||||+++++|.+++. ..+++.+++.|+.||+.||+|||+. +|+||||||+|||++.+ .+||
T Consensus 159 ~~lv~E~~~g~~L~~~~~------------~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl 222 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKG------------QKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKL 222 (681)
T ss_dssp EEEEEECCCCEECC----------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEE
T ss_pred eEEEEEeCCCCcHHHHHh------------CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEE
Confidence 699999999999998773 1589999999999999999999999 99999999999999885 8999
Q ss_pred eccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHhhCC
Q 043900 788 SDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARMALP 867 (953)
Q Consensus 788 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~ 867 (953)
+|||+++..... ....||+.|+|||++.+.. +.++|||||||++|||++|..||........ +
T Consensus 223 ~DFG~a~~~~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------~ 285 (681)
T 2pzi_A 223 IDLGAVSRINSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------P 285 (681)
T ss_dssp CCCTTCEETTCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------C
T ss_pred EecccchhcccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc----------c
Confidence 999999876432 3346999999999987654 8999999999999999999988764211100 0
Q ss_pred chhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCC-CHHHHHHHHHHHHH
Q 043900 868 DHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRM-NMTNVVRQLQSIKN 938 (953)
Q Consensus 868 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~evl~~L~~i~~ 938 (953)
.. ......++.+.+++.+||+.||++|| +++++.+.|..+..
T Consensus 286 ------------~~-----------------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 286 ------------ED-----------------DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp ------------TT-----------------CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred ------------cc-----------------ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence 00 00112345788999999999999999 56777777777643
No 283
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=326.85 Aligned_cols=335 Identities=20% Similarity=0.203 Sum_probs=210.0
Q ss_pred ccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEe
Q 043900 99 LSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFD 178 (953)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 178 (953)
++++++|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34555555555555533222345555555555555555544555555555555555555555544455555555556666
Q ss_pred cCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCC
Q 043900 179 AGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGS 258 (953)
Q Consensus 179 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~ 258 (953)
|++|+++ .+|..++..+++|++|++++|++++..+..+.++++|++|++++|++++...
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------- 182 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-------------------- 182 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--------------------
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--------------------
Confidence 6666555 3444443456666666666666666666667777777777777776653210
Q ss_pred CCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCccccc
Q 043900 259 RGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGT 338 (953)
Q Consensus 259 ~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~ 338 (953)
..+ ++|+.|++++|.+++ +...++|+.|++++|.++..
T Consensus 183 ------------------------------------~~l-~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 183 ------------------------------------SLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp ------------------------------------GGC-TTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE
T ss_pred ------------------------------------ccc-cccceeecccccccc-----cCCCCcceEEECCCCeeeec
Confidence 001 345555555555542 12223455555555555432
Q ss_pred CCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCcc
Q 043900 339 IPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLS 418 (953)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 418 (953)
|..+ .++|+.|++++|++++ +..+..+++|++|+|+
T Consensus 221 -~~~~--~~~L~~L~l~~n~l~~-------------------------~~~l~~l~~L~~L~Ls---------------- 256 (390)
T 3o6n_A 221 -RGPV--NVELTILKLQHNNLTD-------------------------TAWLLNYPGLVEVDLS---------------- 256 (390)
T ss_dssp -ECCC--CSSCCEEECCSSCCCC-------------------------CGGGGGCTTCSEEECC----------------
T ss_pred -cccc--cccccEEECCCCCCcc-------------------------cHHHcCCCCccEEECC----------------
Confidence 2111 2344444444444331 1234444555555554
Q ss_pred ccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEEC
Q 043900 419 WLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDL 498 (953)
Q Consensus 419 ~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 498 (953)
+|.+++..|..|..+++|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|+|
T Consensus 257 ---------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 257 ---------YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp ---------SSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ---------CCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 45555556778889999999999999999 56777889999999999999999 57788999999999999
Q ss_pred CCCcccccCCccccccccCceEeccCCcCcccCCCCCcccccccccccCCcCCCCCC
Q 043900 499 SQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEGVFKNATITSVLGNLKLCGGI 555 (953)
Q Consensus 499 s~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~ 555 (953)
++|+++.. | +..+++|+.|++++|++++... ...+.......+.+++..|+.+
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 99999854 4 6778999999999999987532 2234445555667777778753
No 284
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=1.5e-35 Score=335.02 Aligned_cols=251 Identities=15% Similarity=0.124 Sum_probs=183.2
Q ss_pred cCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcCC-CCeeE--------------
Q 043900 631 DGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIRH-RNLVK-------------- 692 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h-~niv~-------------- 692 (953)
..|...+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+.+++.++| ++...
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 45778889999999999999999888999999987322 2336789999999999977 22111
Q ss_pred -------EEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCC
Q 043900 693 -------ILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQP 765 (953)
Q Consensus 693 -------~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~ 765 (953)
+..++...........+++|+++ +++|.+++...... ......+++..++.++.|++.||+|||+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~---~~~~~~l~~~~~~~i~~qi~~aL~~LH~~--- 230 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH---SSTHKSLVHHARLQLTLQVIRLLASLHHY--- 230 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHH---TTTSHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 11111100001123467777766 68999988422111 01234688999999999999999999999
Q ss_pred CeEeecCCCCCeEecCCCcEEEeccccceecCCCCCccccccccccccccccccc----------CCCCCCcccchHHHH
Q 043900 766 PITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYG----------LGSEVSINGDVYSYG 835 (953)
Q Consensus 766 ~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~sDv~slG 835 (953)
+|+||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++||||||
T Consensus 231 ~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlG 304 (413)
T 3dzo_A 231 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLG 304 (413)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHH
T ss_pred CcccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHH
Confidence 9999999999999999999999999999865322 334457 999999998 666788999999999
Q ss_pred HHHHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhcc
Q 043900 836 ILLLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVAC 915 (953)
Q Consensus 836 ~vl~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c 915 (953)
|++|||++|+.||........ ....+. .. ..+++++.+++.+|
T Consensus 305 vil~elltg~~Pf~~~~~~~~-------------~~~~~~----~~--------------------~~~~~~~~~li~~~ 347 (413)
T 3dzo_A 305 LAIYWIWCADLPNTDDAALGG-------------SEWIFR----SC--------------------KNIPQPVRALLEGF 347 (413)
T ss_dssp HHHHHHHHSSCCCCTTGGGSC-------------SGGGGS----SC--------------------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCcchhhh-------------HHHHHh----hc--------------------ccCCHHHHHHHHHH
Confidence 999999999999975322110 000000 00 02235689999999
Q ss_pred ccCCCCCCCCHHHHHH
Q 043900 916 SMESPGDRMNMTNVVR 931 (953)
Q Consensus 916 l~~dP~~RPt~~evl~ 931 (953)
|+.||++|||+.|+++
T Consensus 348 l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 348 LRYPKEDRLLPLQAME 363 (413)
T ss_dssp TCSSGGGSCCHHHHTT
T ss_pred ccCChhhCcCHHHHHh
Confidence 9999999999988865
No 285
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=333.06 Aligned_cols=250 Identities=21% Similarity=0.280 Sum_probs=179.8
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCCce
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..+|.+.+.||+|+||+||..... +++.||||++..... ..+.+|+++++++ +||||+++++++. +....
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~-----~~~~~ 93 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMF-DNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEK-----DRQFQ 93 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEES-SSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEE-----ETTEE
T ss_pred cEEEecCCeeecCcCEEEEEEEEe-CCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCEE
Confidence 346888899999999997644433 456899999864322 2356799999999 7999999999854 34778
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC-----CC
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE-----EM 783 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-----~~ 783 (953)
++||||++ |+|.+++..... ..++.+++.++.||+.||+|||+. +|+||||||+||+++. ..
T Consensus 94 ~lv~E~~~-g~L~~~l~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~ 160 (432)
T 3p23_A 94 YIAIELCA-ATLQEYVEQKDF---------AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKI 160 (432)
T ss_dssp EEEEECCS-EEHHHHHHSSSC---------CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBC
T ss_pred EEEEECCC-CCHHHHHHhcCC---------CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCce
Confidence 99999995 699999964332 233445678999999999999999 9999999999999953 23
Q ss_pred cEEEeccccceecCCCCC-cccccccccccccccccccC---CCCCCcccchHHHHHHHHHHHh-CCCCCCCcccCCccH
Q 043900 784 MAHVSDFGLARFLPLSPA-QTSSIDAKGSIGYIAPEYGL---GSEVSINGDVYSYGILLLELVT-RKKPVDSMFEGDMNL 858 (953)
Q Consensus 784 ~~kL~DfG~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDv~slG~vl~ellt-g~~pf~~~~~~~~~~ 858 (953)
.+||+|||+|+....... ........||+.|+|||++. +..++.++||||+||++|||++ |..||...... .
T Consensus 161 ~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---~ 237 (432)
T 3p23_A 161 KAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---Q 237 (432)
T ss_dssp CEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---H
T ss_pred eEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---H
Confidence 688999999987643321 12234456999999999987 4567889999999999999999 99998642111 0
Q ss_pred HHHHHhhCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 859 HNFARMALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
... .......... .........+.+++.+||+.||++|||++||++
T Consensus 238 ~~~---~~~~~~~~~~------------------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 238 ANI---LLGACSLDCL------------------------HPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp HHH---HTTCCCCTTS------------------------CTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHH---HhccCCcccc------------------------CccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 000 0000000000 000123456789999999999999999999984
No 286
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.2e-35 Score=316.40 Aligned_cols=255 Identities=31% Similarity=0.498 Sum_probs=222.5
Q ss_pred cCcEEEcccCcccc--cCCccccCCCCCCEEEeec-CcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEE
Q 043900 300 TLEMLLLDNNKIFG--NIPAAIGKFVNLQRLEMWN-NRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNL 375 (953)
Q Consensus 300 ~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L 375 (953)
+++.|+|++|++++ .+|..|.++++|++|++++ |.+.+.+|..|+.+++|++|+|++|++++.+|..++.+ .+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 56777777777776 6777777777777777774 77777777777777777777777777777777777766 46777
Q ss_pred EccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcc
Q 043900 376 DLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKL 455 (953)
Q Consensus 376 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 455 (953)
+|++|.+++.+|..|..+++|++|+|++|++++.+|..+..+...++.|++++|++++.+|..|..++ |+.|++++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 77778887788999999999999999999999899999988886788999999999999999999998 99999999999
Q ss_pred cccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCCCC
Q 043900 456 KGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEG 535 (953)
Q Consensus 456 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 535 (953)
++..|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|..+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 999999999999999999999999977665 8899999999999999999999999999999999999999999999988
Q ss_pred cccccccccccCCcCCCCCCC
Q 043900 536 VFKNATITSVLGNLKLCGGIP 556 (953)
Q Consensus 536 ~~~~~~~~~~~~n~~lcg~~~ 556 (953)
.++.+....+.+|+++||.++
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 889999999999999999765
No 287
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-34 Score=340.23 Aligned_cols=311 Identities=20% Similarity=0.199 Sum_probs=174.3
Q ss_pred CCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEe
Q 043900 51 LQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLF 130 (953)
Q Consensus 51 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~ 130 (953)
+.+++.|++++|.++...+..|.++++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555566666655533333345556666666666666555555566666666666666666655555556666666666
Q ss_pred cccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCcccc
Q 043900 131 LTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLT 210 (953)
Q Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 210 (953)
|++|.|++..+..|+.+++|++|+|++|.+++..|..+.++++|+.|+|++|.+++. +. ..+++|+.|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~---~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DL---SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CG---GGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-Ch---hhhhhhhhhhcccCccc
Confidence 666666544444456666666666666666655555566666666666666665532 11 13444555555554444
Q ss_pred CCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccC
Q 043900 211 GAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLL 290 (953)
Q Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~ 290 (953)
+ +....+|+.|++++|.+
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l--------------------------------------------------------- 223 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSI--------------------------------------------------------- 223 (597)
T ss_dssp E-----EECCTTCSEEECCSSCC---------------------------------------------------------
T ss_pred c-----ccCCchhheeeccCCcc---------------------------------------------------------
Confidence 1 11222334444443333
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc
Q 043900 291 PACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL 370 (953)
Q Consensus 291 p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 370 (953)
....+.. .++|+.|+|++|.+++ +..+..+++|++|+|++|.+++
T Consensus 224 ---------------------~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~--------- 268 (597)
T 3oja_B 224 ---------------------NVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK--------- 268 (597)
T ss_dssp ---------------------CEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE---------
T ss_pred ---------------------ccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC---------
Confidence 3221111 1345555555555553 3455666666666666665543
Q ss_pred eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeee
Q 043900 371 KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDV 450 (953)
Q Consensus 371 ~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~L 450 (953)
..|..|+.+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 269 --------------~~~~~~~~l~~L~~L~Ls~N~l~~--------------------------l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 269 --------------IMYHPFVKMQRLERLYISNNRLVA--------------------------LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp --------------EESGGGTTCSSCCEEECTTSCCCE--------------------------EECSSSCCTTCCEEEC
T ss_pred --------------CCHHHhcCccCCCEEECCCCCCCC--------------------------CCcccccCCCCcEEEC
Confidence 344555566666666666666552 1222334556666777
Q ss_pred cCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCccccc
Q 043900 451 FENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGK 506 (953)
Q Consensus 451 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 506 (953)
++|.++ .+|..+..+++|+.|+|++|+|++. | +..+++|+.|+|++|.+.+.
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 777666 5666666677777777777777643 2 56677888888888888764
No 288
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.6e-34 Score=312.86 Aligned_cols=236 Identities=18% Similarity=0.251 Sum_probs=181.2
Q ss_pred hcCCccc-CcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHH-hhcCCCCeeEEEeeecccccCCCCc
Q 043900 630 TDGFASA-NEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTL-KNIRHRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~~~~~~~~~~~~~~ 707 (953)
.++|.+. +.||+|+||.||+|.+..+++.||+|+++. ...+.+|++++ +..+||||+++++++... ......
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 89 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 89 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCce
Confidence 4567777 789999999999999998889999999963 24567888887 555899999999997542 233567
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecC---CCc
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDE---EMM 784 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~ 784 (953)
.++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~ 158 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRG--------DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAI 158 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCT--------TCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCC
T ss_pred EEEEEeecCCCcHHHHHHhcc--------CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCc
Confidence 899999999999999996432 23689999999999999999999999 9999999999999997 789
Q ss_pred EEEeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCCCCCcccCCccHHHHHHh
Q 043900 785 AHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKPVDSMFEGDMNLHNFARM 864 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~~~~~~~~~~~~~~ 864 (953)
+||+|||++.... +..++.++||||+||++|||++|+.||........
T Consensus 159 ~kl~Dfg~a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-------- 206 (299)
T 3m2w_A 159 LKLTDFGFAKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-------- 206 (299)
T ss_dssp EEECCCTTCEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------
T ss_pred EEEeccccccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh--------
Confidence 9999999997542 23467899999999999999999999975322110
Q ss_pred hCCchhhhhccccccCCchhhhhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHHH
Q 043900 865 ALPDHVVDIVDSTLLSDDEDLAVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVVR 931 (953)
Q Consensus 865 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl~ 931 (953)
.......+....... .......+++++.+++.+||+.||++|||++|+++
T Consensus 207 --~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 207 --SPGMKTRIRMGQYEF---------------PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp ---CCSCCSSCTTCCSS---------------CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --hHHHHHHHhhccccC---------------CchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 000000000000000 00011134567999999999999999999999987
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.1e-33 Score=306.14 Aligned_cols=308 Identities=23% Similarity=0.382 Sum_probs=219.1
Q ss_pred cccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 23 HVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 23 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
.+..+++|++|++++|.++. +| .|..+++|++|+|++|+++ .++. +.++++|++|+|++|.+++ +| .|.++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcC
Confidence 34577888888888888887 44 3888888888888888888 4444 8888888888888888874 43 68888888
Q ss_pred ceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCc
Q 043900 103 EHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMN 182 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 182 (953)
++|++++|++++ ++. +..+++|++|++++|..... +..+..+++|++|++++|++.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 888888888884 343 88888888888888865533 3448888888888888888874333 778888888888888
Q ss_pred ccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCC
Q 043900 183 QLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHS 262 (953)
Q Consensus 183 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~ 262 (953)
++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.++ +..+++|+++++++|.+...
T Consensus 188 ~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--- 258 (347)
T 4fmz_A 188 QIEDISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--- 258 (347)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---
T ss_pred ccccccc---ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---
Confidence 8885443 3478888888888888885444 7888888888888888887655 66667777777777766542
Q ss_pred cccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcC
Q 043900 263 NLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPA 342 (953)
Q Consensus 263 ~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 342 (953)
..+..+++|+.|++++|.+.+. ..+..+ ++|+.|++++|.+++..+..|..+++|+.|++++|.+++..|
T Consensus 259 -----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 259 -----NAVKDLTKLKMLNVGSNQISDI--SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp -----GGGTTCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred -----hhHhcCCCcCEEEccCCccCCC--hhhcCC-CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 2344555666666666666553 233333 456666666666665556666666666666666666664444
Q ss_pred ccCCCCCCeEEecccccc
Q 043900 343 IGELQNLRELRLQRNKFL 360 (953)
Q Consensus 343 ~~~l~~L~~L~L~~N~l~ 360 (953)
+..+++|++|++++|.|+
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 566666666666666654
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.1e-33 Score=303.71 Aligned_cols=128 Identities=25% Similarity=0.346 Sum_probs=87.4
Q ss_pred ccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeec
Q 043900 28 SFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSV 107 (953)
Q Consensus 28 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (953)
.+++++++++|+++. +|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccc-cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 367777777777775 555543 57777777777777665667777777777777777777666777777777777777
Q ss_pred cccccccccCCcccCCCcccEEecccccccccCCccccccccccceeccccccc
Q 043900 108 SVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 108 s~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (953)
++|+++ .+|..+. ++|++|++++|+++...+..|..+++|++|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 777776 4554444 56777777777776555555666666666666666654
No 291
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-34 Score=309.36 Aligned_cols=249 Identities=27% Similarity=0.434 Sum_probs=233.8
Q ss_pred CcEEEEEeCCCeeee--ecCccccCCccCceeecCC-CccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcE
Q 043900 4 QRVKILNLTSLKLAG--SISPHVGNLSFLKVLLLYN-NSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQ 80 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 80 (953)
++|+.|+|+++++.+ .+|+.++++++|++|+|++ |.+++.+|..|.++++|++|+|++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 789999999999998 9999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeccCccccccCCcccCCccccceeeccccccccccCCcccCCC-cccEEecccccccccCCccccccccccceeccccc
Q 043900 81 IRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLS-SINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENW 159 (953)
Q Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (953)
|+|++|.+++.+|..|+.+++|++|++++|++++.+|..++.++ +|++|+|++|++++..|..|..++ |++|+|++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999998 9999999999
Q ss_pred ccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCC
Q 043900 160 LSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPY 239 (953)
Q Consensus 160 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (953)
+++..|..+..+++|+.|+|++|++++.+|. + ..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 9988999999999999999999999977776 3 4789999999999999999999999999999999999999988887
Q ss_pred CCCCCccceeeecccc
Q 043900 240 LEKPQRLSVFSITENS 255 (953)
Q Consensus 240 l~~~~~L~~l~l~~n~ 255 (953)
...+++|+.+++.+|.
T Consensus 287 ~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNK 302 (313)
T ss_dssp STTGGGSCGGGTCSSS
T ss_pred CccccccChHHhcCCC
Confidence 6666666666666664
No 292
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-32 Score=303.03 Aligned_cols=288 Identities=22% Similarity=0.270 Sum_probs=234.7
Q ss_pred cEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEecc
Q 043900 5 RVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLF 84 (953)
Q Consensus 5 ~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 84 (953)
+++.++++++++. .+|..+. ++|++|+|++|+++++.|.+|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3677899999987 8898774 689999999999999888899999999999999999998889999999999999999
Q ss_pred CccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccccccc--ccCCccccccccccceecccccccC
Q 043900 85 YNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLD--GGIPDTFGWLKNLATLAMAENWLSG 162 (953)
Q Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (953)
+|.++ .+|..+. ++|++|++++|++++..+..|+++++|++|++++|.++ +..+..|..+ +|++|++++|+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 99999 6777666 89999999999999776777999999999999999996 3778889888 9999999999998
Q ss_pred CCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCC
Q 043900 163 TIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEK 242 (953)
Q Consensus 163 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~ 242 (953)
.+|..+. ++|++|++++|++++..+..+. .+++|+.|++++|++++..+..+..+++|+.|++++|+++..+
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp----- 257 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP----- 257 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-----
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-----
Confidence 5776655 6888888888888865555554 6788888888888888777777888888888888887776433
Q ss_pred CCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccC-
Q 043900 243 PQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGK- 321 (953)
Q Consensus 243 ~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~- 321 (953)
..+..+ ++|+.|++++|+|++..+..|..
T Consensus 258 -------------------------------------------------~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 258 -------------------------------------------------AGLPDL-KLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp -------------------------------------------------TTGGGC-TTCCEEECCSSCCCBCCTTSSSCS
T ss_pred -------------------------------------------------hhhhcC-ccCCEEECCCCCCCccChhHcccc
Confidence 233333 46777777777777666666654
Q ss_pred -----CCCCCEEEeecCccc--ccCCcCccCCCCCCeEEecccc
Q 043900 322 -----FVNLQRLEMWNNRLS--GTIPPAIGELQNLRELRLQRNK 358 (953)
Q Consensus 322 -----l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N~ 358 (953)
...|+.|++++|.+. +..|.+|..+++|+.+++++|+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356888888888887 6677888888888888888875
No 293
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5e-32 Score=297.68 Aligned_cols=297 Identities=21% Similarity=0.282 Sum_probs=181.0
Q ss_pred CccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceee
Q 043900 27 LSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLS 106 (953)
Q Consensus 27 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (953)
..++++++++++.++. +|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3467777777777776 555443 5677777777777755555677777777777777777766677777777777777
Q ss_pred ccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccC--CCCCcccccccceEEecCCccc
Q 043900 107 VSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSG--TIPSSIFNISSITAFDAGMNQL 184 (953)
Q Consensus 107 Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l 184 (953)
|++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|+++. ..+.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------ 165 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG------------------ 165 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT------------------
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh------------------
Confidence 7777776 4555443 567777777777765555566666666666666666541 2222
Q ss_pred ccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcc
Q 043900 185 QGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNL 264 (953)
Q Consensus 185 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~ 264 (953)
.+.++++|+.|++++|.++..+..+
T Consensus 166 -------------------------------~~~~l~~L~~L~l~~n~l~~l~~~~------------------------ 190 (330)
T 1xku_A 166 -------------------------------AFQGMKKLSYIRIADTNITTIPQGL------------------------ 190 (330)
T ss_dssp -------------------------------GGGGCTTCCEEECCSSCCCSCCSSC------------------------
T ss_pred -------------------------------hccCCCCcCEEECCCCccccCCccc------------------------
Confidence 2333334444444444333211100
Q ss_pred cccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCcc
Q 043900 265 NFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIG 344 (953)
Q Consensus 265 ~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 344 (953)
.++|+.|++++|++++..+..|..+++|+.|+|++|.+++..+.+|.
T Consensus 191 ---------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 191 ---------------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp ---------------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred ---------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 02566677777777666677777777888888888888777777777
Q ss_pred CCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceee
Q 043900 345 ELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGL 424 (953)
Q Consensus 345 ~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L 424 (953)
.+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|....
T Consensus 238 ~l~~L~~L~L~~N~l~------------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------ 287 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV------------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------ 287 (330)
T ss_dssp GSTTCCEEECCSSCCS------------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------
T ss_pred CCCCCCEEECCCCcCc------------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------
Confidence 7888888888777776 3555666677777777777777633222222110
Q ss_pred eccCCcccCCCCccccCCCccceeeecCCcccc--cCCCCccCCccccEEEccCcc
Q 043900 425 DLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKG--EIPSTLGSCKKLEQLEMQGNF 478 (953)
Q Consensus 425 ~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~ 478 (953)
.......|+.|++++|.+.. ..|..|..+.+|+.++|++|+
T Consensus 288 -------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 -------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 00112445555566665542 344556666666666666653
No 294
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=2e-34 Score=317.66 Aligned_cols=247 Identities=16% Similarity=0.163 Sum_probs=184.4
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--------hhhHHHHHHHHHHHhhcC---------CCCeeE
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--------HGAFKSFIAECNTLKNIR---------HRNLVK 692 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~---------h~niv~ 692 (953)
.++|++.+.||+|+||+||+|++ +++.||||+++... ....+.+.+|+.+++.++ ||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 45789999999999999999998 45799999997442 223477889999988885 777777
Q ss_pred EEeeeccc-------------------------ccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHH
Q 043900 693 ILTACSGV-------------------------DYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLN 747 (953)
Q Consensus 693 ~~~~~~~~-------------------------~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~ 747 (953)
+.+++... ++.+....++||||+++|++.+.+.. ..+++.+++.
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-----------~~~~~~~~~~ 165 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-----------KLSSLATAKS 165 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-----------TCCCHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-----------cCCCHHHHHH
Confidence 77764211 01135789999999999977666631 3579999999
Q ss_pred HHHHHHHHHHHHh-hCCCCCeEeecCCCCCeEecCCC--------------------cEEEeccccceecCCCCCccccc
Q 043900 748 IGIDVACALSYLH-HDCQPPITHCDLKPSNVLLDEEM--------------------MAHVSDFGLARFLPLSPAQTSSI 806 (953)
Q Consensus 748 i~~~i~~~L~~LH-~~~~~~ivH~Dlkp~NIll~~~~--------------------~~kL~DfG~a~~~~~~~~~~~~~ 806 (953)
++.||+.||+||| +. +|+||||||+|||++.++ .+||+|||+|+.....
T Consensus 166 i~~qi~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------- 235 (336)
T 2vuw_A 166 ILHQLTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------- 235 (336)
T ss_dssp HHHHHHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------
T ss_pred HHHHHHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------
Confidence 9999999999999 88 999999999999999887 8999999999876421
Q ss_pred ccccccccccccccCCCCCCcccchHHHHHH-HHHHHhCCCCCCCcccCCccHHHHHHhhCCchhhhhccccccCCchhh
Q 043900 807 DAKGSIGYIAPEYGLGSEVSINGDVYSYGIL-LLELVTRKKPVDSMFEGDMNLHNFARMALPDHVVDIVDSTLLSDDEDL 885 (953)
Q Consensus 807 ~~~gt~~y~aPE~~~~~~~~~~sDv~slG~v-l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 885 (953)
...||+.|+|||++.+.. +.++||||+|++ .+++++|..||... .|.... ...+........
T Consensus 236 ~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~----~~~~~~~~~~~~---- 298 (336)
T 2vuw_A 236 IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYL----TDKMLKQMTFKT---- 298 (336)
T ss_dssp EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHH----HHHHHHTCCCSS----
T ss_pred cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHH----HHhhhhhhccCc----
Confidence 346999999999998776 899999998777 78888999998531 010000 000000000000
Q ss_pred hhcccchhhhhhhhhHHHHHHHHHHHhhccccCCCCCCCCHHHHH
Q 043900 886 AVHGNQRQRQARINSKIECLVAMVRIGVACSMESPGDRMNMTNVV 930 (953)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~evl 930 (953)
..........++++.+++.+||+.| |++|++
T Consensus 299 ---------~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 299 ---------KCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp ---------CCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred ---------ccchhhhhhcCHHHHHHHHHHhccC-----CHHHHH
Confidence 0001122357788999999999976 888887
No 295
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.8e-32 Score=301.17 Aligned_cols=289 Identities=20% Similarity=0.250 Sum_probs=235.3
Q ss_pred cEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEecc
Q 043900 5 RVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLF 84 (953)
Q Consensus 5 ~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 84 (953)
+++.++++++++. .+|..+. +++++|+|++|+++++.+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567899999887 7888764 689999999999999888899999999999999999998889999999999999999
Q ss_pred CccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccc--cCCccccccccccceecccccccC
Q 043900 85 YNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDG--GIPDTFGWLKNLATLAMAENWLSG 162 (953)
Q Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 162 (953)
+|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++. ..+..|.++++|++|++++|+++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 99999 6777665 799999999999997777789999999999999999963 77889999999999999999998
Q ss_pred CCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCC
Q 043900 163 TIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEK 242 (953)
Q Consensus 163 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~ 242 (953)
.+|..+. ++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++..+..+..
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 6777665 7899999999999876666555 788899999999988877777888888888888888888754433322
Q ss_pred CCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccC-
Q 043900 243 PQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGK- 321 (953)
Q Consensus 243 ~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~- 321 (953)
+ ++|++|++++|+|++..+..|..
T Consensus 262 l-------------------------------------------------------~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 262 H-------------------------------------------------------KYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp C-------------------------------------------------------SSCCEEECCSSCCCCCCTTSSSCS
T ss_pred C-------------------------------------------------------CCcCEEECCCCcCCccChhhcCCc
Confidence 2 35666666666666555555543
Q ss_pred -----CCCCCEEEeecCcccc--cCCcCccCCCCCCeEEecccc
Q 043900 322 -----FVNLQRLEMWNNRLSG--TIPPAIGELQNLRELRLQRNK 358 (953)
Q Consensus 322 -----l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~ 358 (953)
...++.|++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3567788888888753 556778888888888888775
No 296
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-32 Score=300.33 Aligned_cols=303 Identities=23% Similarity=0.367 Sum_probs=263.7
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+++.|+++++++. .++. +..+++|++|+|++|+++++ +. |..+++|++|+|++|.++ .+| .|.++++|++|++
T Consensus 44 ~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEEC
Confidence 46889999999997 6654 89999999999999999984 44 999999999999999998 444 6999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCC
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGT 163 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 163 (953)
++|.+++ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~- 191 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED- 191 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-
Confidence 9999984 444 9999999999999997664444 59999999999999999985444 9999999999999999984
Q ss_pred CCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCC
Q 043900 164 IPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKP 243 (953)
Q Consensus 164 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~ 243 (953)
++. +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|.++.. +.+..+
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l 264 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDL 264 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTC
T ss_pred ccc-ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcC
Confidence 443 8899999999999999996555 3479999999999999996544 89999999999999999975 568889
Q ss_pred CccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCC
Q 043900 244 QRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFV 323 (953)
Q Consensus 244 ~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~ 323 (953)
++|+.+++++|.+... ..+..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp TTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GGGCT
T ss_pred CCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC--hhhhh
Confidence 9999999999998764 346778999999999999999999988888 589999999999997666 88999
Q ss_pred CCCEEEeecCccc
Q 043900 324 NLQRLEMWNNRLS 336 (953)
Q Consensus 324 ~L~~L~L~~N~i~ 336 (953)
+|+.|++++|.|+
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999986
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.6e-35 Score=338.32 Aligned_cols=390 Identities=18% Similarity=0.145 Sum_probs=198.5
Q ss_pred CCCcEEeCCCCccccccCcC-ccCCCCCcEEeccCccccc----cCCcccCCccccceeeccccccccccCCcc-cCCC-
Q 043900 52 QRLQVLALNNNSIGGEIPAN-ISSCSNLIQIRLFYNELVG----KIPSELGSLSKIEHLSVSVNNLTGSIPSSL-GNLS- 124 (953)
Q Consensus 52 ~~L~~L~L~~n~i~~~~p~~-~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~L~- 124 (953)
++|++|||++|+++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|++++..+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45667777777766433322 5566666666666666653 234445555666666666666654333222 2233
Q ss_pred ---cccEEecccccccc----cCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccccccccccccc
Q 043900 125 ---SINTLFLTDNNLDG----GIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQ 197 (953)
Q Consensus 125 ---~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 197 (953)
+|++|+|++|+++. .++..|..+++|++|+|++|++++..+..+.. .+....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------------------~l~~~~~ 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------------GLLDPQC 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--------------------HHhcCCC
Confidence 46666666666552 23444555555555555555544222221111 0111123
Q ss_pred cccEEEeeCccccCCC----CCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCccccccccccc
Q 043900 198 NLQFFSVFENQLTGAI----PPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNS 273 (953)
Q Consensus 198 ~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~ 273 (953)
+|++|++++|++++.. +..+..+++|++|++++|.++.....
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------------------------------- 188 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR---------------------------------- 188 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH----------------------------------
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH----------------------------------
Confidence 3444444444444321 23334445555555555554421100
Q ss_pred ccccEEeccCCcccccCChhhhhccccCcEEEcccCccccc----CCccccCCCCCCEEEeecCcccccC-----CcCcc
Q 043900 274 TRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGN----IPAAIGKFVNLQRLEMWNNRLSGTI-----PPAIG 344 (953)
Q Consensus 274 ~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~ 344 (953)
.+...+....++|++|++++|.+++. ++..+..+++|++|++++|.++... +..+.
T Consensus 189 ---------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 189 ---------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253 (461)
T ss_dssp ---------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred ---------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence 00001111112455555555555432 2444455555666666666555322 22222
Q ss_pred CCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccC----cccc
Q 043900 345 ELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLG----LSWL 420 (953)
Q Consensus 345 ~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----~~~~ 420 (953)
.+++|++|++++|.++..... .++..+..+++|++|+|++|.+++..+..+.. ....
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCG-------------------DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHH-------------------HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCceEEECcCCCCCHHHHH-------------------HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 355555555555555421000 02334444555666666666554322211211 1123
Q ss_pred ceeeeccCCcccCC----CCccccCCCccceeeecCCcccccCCCCccC-----CccccEEEccCccccC----CCCccc
Q 043900 421 LIGLDLSRNQLTGS----IPSEVGNLKNLEVLDVFENKLKGEIPSTLGS-----CKKLEQLEMQGNFLQG----PIPSSL 487 (953)
Q Consensus 421 l~~L~ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~~p~~~ 487 (953)
++.|++++|.+++. ++..+..+++|+.|+|++|++++..+..+.. .++|++|+|++|++++ .+|..+
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 44555555555543 4555667788888888888887554444432 5688888888888875 677777
Q ss_pred cCCCCCcEEECCCCcccccCCcccc-----ccccCceEeccCCcCcc
Q 043900 488 SSLKGLNVLDLSQNNLSGKIPEFLV-----GFQLLENLNLSNNNLEG 529 (953)
Q Consensus 488 ~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~l~l~~N~l~~ 529 (953)
..+++|++|||++|++++.-...+. ...+|+.|.+.+|.+..
T Consensus 395 ~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 7788888888888888753211111 12357777777766553
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3e-35 Score=339.82 Aligned_cols=398 Identities=17% Similarity=0.129 Sum_probs=197.5
Q ss_pred CcEEEEEeCCCeeeeecCc-cccCCccCceeecCCCccCcC----CCccCCCCCCCcEEeCCCCccccccCcCcc-CCC-
Q 043900 4 QRVKILNLTSLKLAGSISP-HVGNLSFLKVLLLYNNSFNHG----IPSEFDRLQRLQVLALNNNSIGGEIPANIS-SCS- 76 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~-~l~- 76 (953)
.+++.|||+++++...... .+..+++|++|+|++|+++.. ++..+..+++|++|+|++|.+++..+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3566666666665432222 255566666666666666632 344555566666666666666543333322 233
Q ss_pred ---CCcEEeccCccccc----cCCcccCCccccceeeccccccccccCCccc-----CCCcccEEecccccccccCCccc
Q 043900 77 ---NLIQIRLFYNELVG----KIPSELGSLSKIEHLSVSVNNLTGSIPSSLG-----NLSSINTLFLTDNNLDGGIPDTF 144 (953)
Q Consensus 77 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~L~~L~~L~L~~N~l~~~~~~~~ 144 (953)
+|++|+|++|.++. .++..|..+++|++|+|++|++++..+..+. .+++|++|+|++|+++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 45566666655552 3345555555555555555555433222221 133455555555555432210
Q ss_pred cccccccceecccccccCCCCCcccccccceEEecCCccccccccccccc----ccccccEEEeeCccccCC----CCCC
Q 043900 145 GWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGF----TLQNLQFFSVFENQLTGA----IPPA 216 (953)
Q Consensus 145 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----~l~~L~~L~L~~N~l~~~----~~~~ 216 (953)
.++..+..+++|++|++++|.+++..+..+.. .+++|++|++++|.++.. ++..
T Consensus 161 ------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 161 ------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred ------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 11233334445555555555554332222221 233566666666655532 2444
Q ss_pred CcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhh
Q 043900 217 ISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISN 296 (953)
Q Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~ 296 (953)
+..+++|++|++++|+++.... . .++..+..
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~-----------------------------~--------------------~l~~~~~~ 253 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGM-----------------------------A--------------------ELCPGLLH 253 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHH-----------------------------H--------------------HHHHHHTS
T ss_pred HHhCCCccEEeccCCcCChHHH-----------------------------H--------------------HHHHHHhc
Confidence 4555566666666555542100 0 00011111
Q ss_pred ccccCcEEEcccCccccc----CCccccCCCCCCEEEeecCcccccCCcCccC-----CCCCCeEEeccccccCCCCCCC
Q 043900 297 LSTTLEMLLLDNNKIFGN----IPAAIGKFVNLQRLEMWNNRLSGTIPPAIGE-----LQNLRELRLQRNKFLGNIPPSI 367 (953)
Q Consensus 297 ~~~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~p~~~ 367 (953)
..++|++|++++|+++.. ++..+..+++|++|++++|.+++..+..+.. .++|++|+|++|.+++...
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--- 330 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC--- 330 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH---
Confidence 113455555555555432 3344445555666666666555333333222 1455555555555442100
Q ss_pred CCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCcccc-CCCccc
Q 043900 368 GNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVG-NLKNLE 446 (953)
Q Consensus 368 ~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~-~l~~L~ 446 (953)
..++..+..+++|++|+|++|++++..+..+. ..+. ..++|+
T Consensus 331 ----------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~---------------------~~l~~~~~~L~ 373 (461)
T 1z7x_W 331 ----------------SHFSSVLAQNRFLLELQISNNRLEDAGVRELC---------------------QGLGQPGSVLR 373 (461)
T ss_dssp ----------------HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH---------------------HHHTSTTCCCC
T ss_pred ----------------HHHHHHHhhCCCccEEEccCCccccccHHHHH---------------------HHHcCCCCceE
Confidence 01344555667777777777766532221111 1111 145777
Q ss_pred eeeecCCcccc----cCCCCccCCccccEEEccCccccCCCCcccc-----CCCCCcEEECCCCcccccCCcc
Q 043900 447 VLDVFENKLKG----EIPSTLGSCKKLEQLEMQGNFLQGPIPSSLS-----SLKGLNVLDLSQNNLSGKIPEF 510 (953)
Q Consensus 447 ~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~ 510 (953)
.|+|++|++++ .+|..+..+++|++|+|++|++++.....+. ...+|+.|++.+|.+....++.
T Consensus 374 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 77777777775 5666777777788888888877643211111 2346777777777776544443
No 299
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=286.56 Aligned_cols=279 Identities=20% Similarity=0.207 Sum_probs=150.6
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
.....++++|+++. +|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus 32 ~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 33445555555554 443333 355556666665554444455555566666666665555555555555566666666
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCC-ccccccccccceecccc-cccCCCCCcccccccceEEecCCccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIP-DTFGWLKNLATLAMAEN-WLSGTIPSSIFNISSITAFDAGMNQLQG 186 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 186 (953)
+|++++..+..|+++++|++|+|++|+++...+ ..|..+++|++|++++| .++...|..+.++++|++|++++|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 665553333335555566666666665553322 35555566666666555 3443334555555566666666666555
Q ss_pred ccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccc
Q 043900 187 VIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNF 266 (953)
Q Consensus 187 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~ 266 (953)
..|..+. .+++|++|++++|+++......+..+++|+.|++++|++++.++.-
T Consensus 189 ~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------------- 241 (353)
T 2z80_A 189 YEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE-------------------------- 241 (353)
T ss_dssp ECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred cCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc--------------------------
Confidence 4444443 4556666666666655322223344556666666666655432210
Q ss_pred cccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccc----cCCccccCCCCCCEEEeecCcccccCCcC
Q 043900 267 LCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFG----NIPAAIGKFVNLQRLEMWNNRLSGTIPPA 342 (953)
Q Consensus 267 l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 342 (953)
+...... ..++.++++++.+.+ .+|..+..+++|+.|++++|+|+...+..
T Consensus 242 l~~~~~~-------------------------~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 242 LSTGETN-------------------------SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp -----CC-------------------------CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccccccc-------------------------chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence 0000001 223444444444432 24556777777888888888887444444
Q ss_pred ccCCCCCCeEEeccccccCC
Q 043900 343 IGELQNLRELRLQRNKFLGN 362 (953)
Q Consensus 343 ~~~l~~L~~L~L~~N~l~~~ 362 (953)
|..+++|++|+|++|++.+.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred HhcCCCCCEEEeeCCCccCc
Confidence 67778888888888877643
No 300
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.4e-29 Score=273.70 Aligned_cols=226 Identities=18% Similarity=0.242 Sum_probs=192.7
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+|+.|+|+++++. .+|+.++++++|++|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 57888889888887 88888888888999999999888 58888888889999999999888 78888888889999999
Q ss_pred cCccccccCCcccCC---------ccccceeeccccccccccCCcccCCCcccEEecccccccccCCcccccccccccee
Q 043900 84 FYNELVGKIPSELGS---------LSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLA 154 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (953)
++|.+.+.+|..++. +++|++|+|++|+++ .+|..++++++|++|+|++|+++ .+|..|..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 888887788877664 888888888888888 77888888888888888888888 4666788888888888
Q ss_pred cccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEccccccc
Q 043900 155 MAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLT 234 (953)
Q Consensus 155 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (953)
|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+. .+++|++|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888888888887765 7888888888888888888888888888888888877665
Q ss_pred C
Q 043900 235 G 235 (953)
Q Consensus 235 ~ 235 (953)
.
T Consensus 315 ~ 315 (328)
T 4fcg_A 315 Q 315 (328)
T ss_dssp C
T ss_pred H
Confidence 3
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.8e-29 Score=274.41 Aligned_cols=279 Identities=17% Similarity=0.211 Sum_probs=206.8
Q ss_pred CCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCccc
Q 043900 48 FDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSIN 127 (953)
Q Consensus 48 ~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~ 127 (953)
-..+......++++|.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..|.+|+++++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 344556667899999999 8888765 4899999999999977677899999999999999999988888899999999
Q ss_pred EEecccccccccCCccccccccccceecccccccCCCCC--cccccccceEEecCCcc-cccccccccccccccccEEEe
Q 043900 128 TLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPS--SIFNISSITAFDAGMNQ-LQGVIPLDFGFTLQNLQFFSV 204 (953)
Q Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L 204 (953)
+|+|++|++++..+..|+++++|++|+|++|+++ .+|. .+.++++|++|++++|. ++...+..+ ..+++|+.|++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l 181 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEI 181 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEEC
Confidence 9999999998666666899999999999999998 4554 67788888888888884 554334444 36788888888
Q ss_pred eCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCC
Q 043900 205 FENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINAN 284 (953)
Q Consensus 205 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n 284 (953)
++|++++..|..+..+++|++|++++|+++.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------------------------------------------- 212 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHIL------------------------------------------------- 212 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTT-------------------------------------------------
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCcccc-------------------------------------------------
Confidence 8888887777777777777777777777642
Q ss_pred cccccCChhhhhccccCcEEEcccCcccccCCcccc---CCCCCCEEEeecCcccc----cCCcCccCCCCCCeEEeccc
Q 043900 285 NFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIG---KFVNLQRLEMWNNRLSG----TIPPAIGELQNLRELRLQRN 357 (953)
Q Consensus 285 ~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N 357 (953)
+|..+....++|+.|++++|.+++..+..+. ....++.++++++.+++ .+|.++..+++|++|+|++|
T Consensus 213 -----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 213 -----LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp -----HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred -----chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 2233333235677777777777765544332 34567777777777764 25666777777777777777
Q ss_pred cccCCCCCCCCCceeeEEEccCCcCCCCCCcc-CCCCCCCcEEEcCCCccCCC
Q 043900 358 KFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSS-LGQYKTLTIIDLSDNNLTGT 409 (953)
Q Consensus 358 ~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~ 409 (953)
+++ .+|.. |..+++|++|+|++|.+++.
T Consensus 288 ~l~------------------------~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 288 QLK------------------------SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCC------------------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCC------------------------ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 665 23333 46777788888888877744
No 302
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.8e-29 Score=268.69 Aligned_cols=226 Identities=21% Similarity=0.255 Sum_probs=179.1
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccc--cCcCccCCCCCcEEeccC
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGE--IPANISSCSNLIQIRLFY 85 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~L~~ 85 (953)
.++.++.++. .+|..+. ++|++|+|++|+++.+.+..|.++++|++|+|++|.++.. .|..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 5677777776 7777554 6788888888888875556678888888888888888732 366777888888888888
Q ss_pred ccccccCCcccCCccccceeeccccccccccC-CcccCCCcccEEecccccccccCCccccccccccceecccccccC-C
Q 043900 86 NELVGKIPSELGSLSKIEHLSVSVNNLTGSIP-SSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSG-T 163 (953)
Q Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 163 (953)
|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8888 567778888888888888888885544 578888888888888888887788888888888888888888875 4
Q ss_pred CCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCC
Q 043900 164 IPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVP 238 (953)
Q Consensus 164 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (953)
.|..+..+++|++|++++|++++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++.++
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 778888888888888888888866565554 67888888888888887666677888888888888888876544
No 303
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.5e-29 Score=269.23 Aligned_cols=201 Identities=19% Similarity=0.232 Sum_probs=159.0
Q ss_pred CceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcccccc--CCcccCCccccceeec
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGK--IPSELGSLSKIEHLSV 107 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L 107 (953)
-+.+++++++++. +|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++.. .|..+..+++|++|+|
T Consensus 9 ~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3678999999997 665553 6899999999999944445588999999999999998733 3667778899999999
Q ss_pred cccccccccCCcccCCCcccEEecccccccccCC-ccccccccccceecccccccCCCCCcccccccceEEecCCccccc
Q 043900 108 SVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIP-DTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQG 186 (953)
Q Consensus 108 s~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 186 (953)
++|.++ .+|..+..+++|++|++++|++++..+ ..|..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999998 577778999999999999999986554 578889999999999999887778888888888888888888875
Q ss_pred -ccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccC
Q 043900 187 -VIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTG 235 (953)
Q Consensus 187 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (953)
..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus 165 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 165 NFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp GEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred ccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 3454443 67777777777777776666666666666666666666654
No 304
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.4e-28 Score=263.95 Aligned_cols=225 Identities=21% Similarity=0.246 Sum_probs=149.1
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
+.++.++.++. .+|..+ .++|++|+|++|+++++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 566543 356777777777777766666777777777777777777666667777777777777777
Q ss_pred c-ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCC
Q 043900 87 E-LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIP 165 (953)
Q Consensus 87 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 165 (953)
. ++...|..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..|+.+++|++|+|++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 665556667777777777777777776666667777777777777777765555666777777777777777764444
Q ss_pred CcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccC
Q 043900 166 SSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTG 235 (953)
Q Consensus 166 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (953)
..+..+++|+.|++++|++++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 4566666677777777766655555544 56666666666666665555556666666666666666653
No 305
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-27 Score=274.55 Aligned_cols=245 Identities=20% Similarity=0.194 Sum_probs=208.8
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
..++.++.++. .+|..+. +++++|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45677777776 7887664 68999999999999988899999999999999999999888889999999999999999
Q ss_pred cccccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccc-ccccccCCccccccccccceecccccccCCCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTD-NNLDGGIPDTFGWLKNLATLAMAENWLSGTIP 165 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 165 (953)
.|++..+..|.++++|++|+|++|+++...+..|.++++|++|+|++ |.++...+..|.++++|++|+|++|+++ .+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc
Confidence 99977777799999999999999999977777899999999999998 5666555667999999999999999998 455
Q ss_pred CcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCC-CCCCC
Q 043900 166 SSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPY-LEKPQ 244 (953)
Q Consensus 166 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~~~ 244 (953)
.+..+++|+.|+|++|++++..|..|. .+++|+.|+|++|++++..+..|.++++|+.|+|++|++++.++. +..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 578899999999999999977676665 799999999999999988899999999999999999999987664 45566
Q ss_pred ccceeeecccccC
Q 043900 245 RLSVFSITENSLG 257 (953)
Q Consensus 245 ~L~~l~l~~n~l~ 257 (953)
+|+.+++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 6777777666654
No 306
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=273.75 Aligned_cols=245 Identities=21% Similarity=0.211 Sum_probs=198.8
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
..++.++.++. .+|..+. +++++|+|++|+|+.+.+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45667777775 7887664 67888999999999888888899999999999999998777788888999999999999
Q ss_pred cccccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccc-ccccccCCccccccccccceecccccccCCCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTD-NNLDGGIPDTFGWLKNLATLAMAENWLSGTIP 165 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 165 (953)
+|++..+..|.++++|++|+|++|+++...+..|.++++|++|+|++ |.++...+..|.++++|++|+|++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 98866666788899999999999998877777888899999999988 4566555667888999999999999888 566
Q ss_pred CcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCC-CCCCC
Q 043900 166 SSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPY-LEKPQ 244 (953)
Q Consensus 166 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~~~ 244 (953)
.+..+++|+.|+|++|++++..|..|. .+++|+.|+|++|+|++..+..|.++++|+.|+|++|+++..++. +..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 478888899999999998866666655 788899999999999888888888899999999999988877654 45556
Q ss_pred ccceeeecccccC
Q 043900 245 RLSVFSITENSLG 257 (953)
Q Consensus 245 ~L~~l~l~~n~l~ 257 (953)
+|+.+++++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 6666666666553
No 307
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=270.31 Aligned_cols=230 Identities=22% Similarity=0.206 Sum_probs=192.7
Q ss_pred ccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEEEc
Q 043900 299 TTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDL 377 (953)
Q Consensus 299 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L 377 (953)
++++.|+|++|+|++..+..|.++++|+.|+|++|.|++..+.+|.++++|++|+|++|+|++..+..|..+ .+++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 468888888888888778888888888888888888887777888888888888888888886666677776 5788888
Q ss_pred cCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccc
Q 043900 378 SCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKG 457 (953)
Q Consensus 378 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 457 (953)
++|.++...+..|..+++|+.|+|++|...+.++...+.....++.|+|++|+++ .+| .+..+++|+.|+|++|+|++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 8888887777788899999999999855444666655555566778888888888 455 47888999999999999998
Q ss_pred cCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCccc
Q 043900 458 EIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGM 530 (953)
Q Consensus 458 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 530 (953)
..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|++.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 8888999999999999999999988888899999999999999999987777888899999999999988754
No 308
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1e-30 Score=312.13 Aligned_cols=432 Identities=12% Similarity=0.047 Sum_probs=208.3
Q ss_pred ccccCCccCceeecCCCccC---cCCCccCC------------CCCCCcEEeCCCCccccccCcCccCC--CCCcEEecc
Q 043900 22 PHVGNLSFLKVLLLYNNSFN---HGIPSEFD------------RLQRLQVLALNNNSIGGEIPANISSC--SNLIQIRLF 84 (953)
Q Consensus 22 ~~~~~l~~L~~L~L~~n~l~---~~~~~~~~------------~l~~L~~L~L~~n~i~~~~p~~~~~l--~~L~~L~L~ 84 (953)
..+..+++|++|+|++|... +..|..++ .+++|++|+|++|.+++..+..+..+ .+|++|+|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 34456667777777665321 22333333 45566666666665555444444442 236666665
Q ss_pred Ccc-ccc-cCCcccCCccccceeeccccccccc----cCCcccCCCcccEEecccccccc----cCCcccccccccccee
Q 043900 85 YNE-LVG-KIPSELGSLSKIEHLSVSVNNLTGS----IPSSLGNLSSINTLFLTDNNLDG----GIPDTFGWLKNLATLA 154 (953)
Q Consensus 85 ~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~ 154 (953)
+|. ++. .++..+.++++|++|+|++|.+++. ++..+.++++|++|++++|.+++ .++..+..+++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 554 110 1111123455556666665555433 22233445555555555555542 2223334455555555
Q ss_pred cccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEccccccc
Q 043900 155 MAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLT 234 (953)
Q Consensus 155 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (953)
|++|.+. .+|..+.++++|++|+++.+...... ...+..+..+++|+.|+++++...
T Consensus 227 L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~l~~~~~L~~L~l~~~~~~ 283 (592)
T 3ogk_B 227 VGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGM----------------------PEKYMNLVFPRKLCRLGLSYMGPN 283 (592)
T ss_dssp CSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTC----------------------TTSSSCCCCCTTCCEEEETTCCTT
T ss_pred ccCccHH-HHHHHHhhhhHHHhhcccccccccch----------------------HHHHHHhhccccccccCccccchh
Confidence 5555554 24444555555555555432211000 122233444445555544443222
Q ss_pred CcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcc-------
Q 043900 235 GEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLD------- 307 (953)
Q Consensus 235 ~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~------- 307 (953)
..+..+...++|++|++++|.+.... ....+..+++|+.|+++ +.+.......+....++|++|+++
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~-----~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETED-----HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHH-----HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSST
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHH-----HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccc
Confidence 22222222333333333333321110 00112344556666665 333222222222222457777776
Q ss_pred ----cCcccccCCc-cccCCCCCCEEEeecCcccccCCcCccC-CCCCCeEEeccccccCCCCCCCCCceeeEEEccCCc
Q 043900 308 ----NNKIFGNIPA-AIGKFVNLQRLEMWNNRLSGTIPPAIGE-LQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNF 381 (953)
Q Consensus 308 ----~N~i~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~ 381 (953)
.|.+++.... .+..+++|++|+++.|.+++..+..+.. +++|+.|+++++. ..|.
T Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-------------------~~n~ 418 (592)
T 3ogk_B 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-------------------REER 418 (592)
T ss_dssp TSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------------------CCSC
T ss_pred cccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------------------CCcc
Confidence 2444432211 2334666777777666666555555544 6667777665221 1223
Q ss_pred CCCC-----CCccCCCCCCCcEEEcCCCc--cCCCCCccccCccccceeeeccCCcccC-CCCccccCCCccceeeecCC
Q 043900 382 LQGS-----IPSSLGQYKTLTIIDLSDNN--LTGTIPPQFLGLSWLLIGLDLSRNQLTG-SIPSEVGNLKNLEVLDVFEN 453 (953)
Q Consensus 382 l~~~-----~p~~~~~l~~L~~L~L~~N~--l~~~~p~~~~~~~~~l~~L~ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N 453 (953)
+++. ++..+.++++|+.|+|++|. +++..+..+......++.|++++|++++ .++..+.++++|+.|++++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 3321 22335567778888886432 5544333333333445666777766654 23444566677777777777
Q ss_pred ccccc-CCCCccCCccccEEEccCccccCCCCccc-cCCCCCcEEECCCC
Q 043900 454 KLKGE-IPSTLGSCKKLEQLEMQGNFLQGPIPSSL-SSLKGLNVLDLSQN 501 (953)
Q Consensus 454 ~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N 501 (953)
.+++. ++..+..+++|+.|+|++|++++.-...+ ..++.+....+..+
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 76543 23334556777777777777765433333 24555555555443
No 309
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3e-27 Score=271.27 Aligned_cols=249 Identities=19% Similarity=0.192 Sum_probs=207.6
Q ss_pred cEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEecc
Q 043900 277 NRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQR 356 (953)
Q Consensus 277 ~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 356 (953)
..++.++..+.. +|..+ +++++.|+|++|+|++..+..|.++++|+.|+|++|.|++..+.+|.++++|++|+|++
T Consensus 57 ~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCc-cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345555555553 45433 36799999999999988888999999999999999999988889999999999999999
Q ss_pred ccccCCCCCCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCC
Q 043900 357 NKFLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSI 435 (953)
Q Consensus 357 N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~ 435 (953)
|+|++..+..|..+ .+++|+|++|.+++..+..|.++++|+.|+|++|...+.++...+.....++.|+|++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 99997777778877 578999999999977778899999999999998544446776655555667789999999985 4
Q ss_pred CccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccc
Q 043900 436 PSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQ 515 (953)
Q Consensus 436 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 515 (953)
| .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 588889999999999999988888899999999999999999988888899999999999999999977777888889
Q ss_pred cCceEeccCCcCcccC
Q 043900 516 LLENLNLSNNNLEGMV 531 (953)
Q Consensus 516 ~L~~l~l~~N~l~~~~ 531 (953)
+|+.|+|++|++.+..
T Consensus 291 ~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDC 306 (452)
T ss_dssp TCCEEECCSSCEECST
T ss_pred CCCEEEccCCCcCCCC
Confidence 9999999999887643
No 310
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.3e-27 Score=274.79 Aligned_cols=108 Identities=29% Similarity=0.280 Sum_probs=65.7
Q ss_pred CCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEE
Q 043900 394 KTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLE 473 (953)
Q Consensus 394 ~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 473 (953)
++|+.|++++|+++ .+|.. ...++.|++++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+
T Consensus 201 ~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp TTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred chhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 44555555555555 33322 1234455555555553 33 33466777777777776 4554 456677777
Q ss_pred ccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccc
Q 043900 474 MQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQ 515 (953)
Q Consensus 474 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 515 (953)
|++|+|+ .+|..|..+++|+.|+|++|.+++.+|..+..++
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 7777777 5666777777777777777777776666665554
No 311
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.2e-29 Score=273.81 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=78.9
Q ss_pred cCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccc-cccCcCcc-------CCCCCcEEeccCccccccCCccc
Q 043900 25 GNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIG-GEIPANIS-------SCSNLIQIRLFYNELVGKIPSEL 96 (953)
Q Consensus 25 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~ 96 (953)
+..++|++|++++|.+ .+|..+... |++|+|++|.++ ..+|..+. ++++|++|+|++|++++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666666 245444333 566666666663 23444333 45555555555555555555544
Q ss_pred --CCccccceeeccccccccccCCcccCC-----CcccEEecccccccccCCccccccccccceecccccccCC--CCCc
Q 043900 97 --GSLSKIEHLSVSVNNLTGSIPSSLGNL-----SSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGT--IPSS 167 (953)
Q Consensus 97 --~~l~~L~~L~Ls~N~l~~~~p~~~~~L-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~ 167 (953)
+.+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|+.|+.+++|++|+|++|++.+. .|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4555555555555555533 4444444 5555555555555544445555555555555555554322 1222
Q ss_pred c--cccccceEEecCCcccc
Q 043900 168 I--FNISSITAFDAGMNQLQ 185 (953)
Q Consensus 168 l--~~l~~L~~L~L~~N~l~ 185 (953)
+ ..+++|++|+|++|+++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCC
T ss_pred HHhccCCCCCEEECCCCcCc
Confidence 2 44444455555555444
No 312
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=6.8e-29 Score=270.54 Aligned_cols=268 Identities=19% Similarity=0.164 Sum_probs=144.9
Q ss_pred EEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccC
Q 043900 6 VKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFY 85 (953)
Q Consensus 6 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 85 (953)
++.++++.+.+...+...+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ |..+++|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444444444432233333344455555555555555444455555555555555555553322 44555555555555
Q ss_pred ccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCC
Q 043900 86 NELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIP 165 (953)
Q Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 165 (953)
|.+++.. ..++|++|++++|++++..+.. +++|++|+|++|++++..|
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---------------------------~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---------------------------GQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---------------------------CSSCEEEECCSSCCCSGGG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---------------------------cCCCCEEECCCCCCCCccc
Confidence 5544211 1244444444444444332221 3344444444444443334
Q ss_pred CcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCc
Q 043900 166 SSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQR 245 (953)
Q Consensus 166 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~ 245 (953)
..+..+++|+.|+|++|++++..+..+...+++|++|++++|+|++. + ....+++|++|++++|++++.+
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-------- 207 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-------- 207 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC--------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch--------
Confidence 44444555555555555555444444433455555555555555532 1 1223556666666666555322
Q ss_pred cceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCC
Q 043900 246 LSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNL 325 (953)
Q Consensus 246 L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L 325 (953)
..+..+ ++|+.|++++|+++ .+|..+..+++|
T Consensus 208 ----------------------------------------------~~~~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 208 ----------------------------------------------PEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp ----------------------------------------------GGGGGG-TTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred ----------------------------------------------hhhccc-CcccEEECcCCccc-chhhHhhcCCCC
Confidence 223333 46888888888887 456678888888
Q ss_pred CEEEeecCccc-ccCCcCccCCCCCCeEEec-cccccCCCCC
Q 043900 326 QRLEMWNNRLS-GTIPPAIGELQNLRELRLQ-RNKFLGNIPP 365 (953)
Q Consensus 326 ~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~-~N~l~~~~p~ 365 (953)
+.|++++|.+. +..|.++..+++|+.|+++ .+.+++..|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999888 6778888888888888888 4445554443
No 313
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3e-27 Score=258.25 Aligned_cols=235 Identities=18% Similarity=0.280 Sum_probs=172.6
Q ss_pred ccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEE
Q 043900 274 TRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELR 353 (953)
Q Consensus 274 ~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 353 (953)
.+++.|++++|++. .+|..++.+ ++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 344445443 35555555555555 45555555555555555555555 4455555555555555
Q ss_pred eccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccC
Q 043900 354 LQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTG 433 (953)
Q Consensus 354 L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~ 433 (953)
|++|++.+.+|..++.. ..+..|.++++|++|+|++|+++ .+|..+..+. .++.|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCCCc
Confidence 55555555554443321 11223455899999999999998 8888766555 56689999999995
Q ss_pred CCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccc
Q 043900 434 SIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVG 513 (953)
Q Consensus 434 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 513 (953)
+|..|..+++|++|+|++|.+.+.+|..|+.+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|+.+.+
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 6678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEeccCCcCcc
Q 043900 514 FQLLENLNLSNNNLEG 529 (953)
Q Consensus 514 l~~L~~l~l~~N~l~~ 529 (953)
+++|+.+++..|.+..
T Consensus 300 L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQ 315 (328)
T ss_dssp SCTTCEEECCGGGSCC
T ss_pred ccCceEEeCCHHHHHH
Confidence 9999999999887654
No 314
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.8e-27 Score=273.17 Aligned_cols=134 Identities=24% Similarity=0.323 Sum_probs=86.9
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
++++|++++|+++. +|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 47788888888885 565554 67888888888887 5565 4677777777777777 4554 56777777777
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
+|+++ .+|. .+++|++|++++|+|+. +|.. +++|++|+|++|+++ .+|. .+.+|+.|++++|+|+
T Consensus 110 ~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 110 SNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp SCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred CCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC
Confidence 77777 3443 45677777777777763 4432 356666666666665 3332 1234455555555554
No 315
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.8e-30 Score=309.89 Aligned_cols=380 Identities=15% Similarity=0.069 Sum_probs=194.1
Q ss_pred CccccceeeccccccccccCCcccCC--CcccEEeccccc-ccc-cCCccccccccccceecccccccCC----CCCccc
Q 043900 98 SLSKIEHLSVSVNNLTGSIPSSLGNL--SSINTLFLTDNN-LDG-GIPDTFGWLKNLATLAMAENWLSGT----IPSSIF 169 (953)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~L--~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~ 169 (953)
.+++|++|+|++|.+++..+..++.+ .+|++|+|++|. ++. .++..+..+++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 44555555555555554444444332 235555555554 110 1112223455666666666655433 222234
Q ss_pred ccccceEEecCCccccc----ccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCc
Q 043900 170 NISSITAFDAGMNQLQG----VIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQR 245 (953)
Q Consensus 170 ~l~~L~~L~L~~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~ 245 (953)
.+++|++|++++|.+++ .++. +...+++|+.|++++|.+.+ ++..+..+++|+.|+++........+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~------ 261 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPE------ 261 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTT------
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHH------
Confidence 55666666666666652 2222 22356777777777777774 556777788888888875322111000
Q ss_pred cceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCC-ccccCCCC
Q 043900 246 LSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIP-AAIGKFVN 324 (953)
Q Consensus 246 L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~-~~~~~l~~ 324 (953)
....+..+++|+.|.++.+ ..+.+|..+..+ ++|++|++++|.+++... ..+..+++
T Consensus 262 --------------------~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 262 --------------------KYMNLVFPRKLCRLGLSYM-GPNEMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp --------------------SSSCCCCCTTCCEEEETTC-CTTTGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred --------------------HHHHhhccccccccCcccc-chhHHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 0112233445555555543 223345544444 578888888888654333 33577888
Q ss_pred CCEEEeecCcccccCCcCccCCCCCCeEEecc-----------ccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCC
Q 043900 325 LQRLEMWNNRLSGTIPPAIGELQNLRELRLQR-----------NKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQY 393 (953)
Q Consensus 325 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l 393 (953)
|+.|+++++-..+.++..+..+++|++|+|++ |.+++... +..+..+
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~----------------------~~l~~~~ 377 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL----------------------IALAQGC 377 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH----------------------HHHHHHC
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH----------------------HHHHhhC
Confidence 88888883333333344446678888888883 44442111 1111223
Q ss_pred CCCcEEEcCCCccCCCCCccccCccccceeeecc----CCcccCC-----CCccccCCCccceeeecCC--cccccCCCC
Q 043900 394 KTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLS----RNQLTGS-----IPSEVGNLKNLEVLDVFEN--KLKGEIPST 462 (953)
Q Consensus 394 ~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~ 462 (953)
++|++|+++.|++++..+..+......++.|+++ .|.+++. ++..+.++++|+.|++++| .+++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 4444444444444433222222212233344443 3444432 2223445666666666532 244333333
Q ss_pred cc-CCccccEEEccCccccC-CCCccccCCCCCcEEECCCCccccc-CCccccccccCceEeccCCcCcc
Q 043900 463 LG-SCKKLEQLEMQGNFLQG-PIPSSLSSLKGLNVLDLSQNNLSGK-IPEFLVGFQLLENLNLSNNNLEG 529 (953)
Q Consensus 463 ~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~ 529 (953)
++ .+++|+.|+|++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|+.|++++|+++.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 33 25666666666666654 2333445566666666666666543 33334456666666666666554
No 316
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.1e-27 Score=251.89 Aligned_cols=227 Identities=22% Similarity=0.217 Sum_probs=131.3
Q ss_pred cEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEecc
Q 043900 277 NRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQR 356 (953)
Q Consensus 277 ~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 356 (953)
+.++.+++.+.. +|.. .+++++.|++++|++++..+..|..+++|++|++++|.+++..|.+|..+++|++|+|++
T Consensus 14 ~~~~c~~~~l~~-ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 456666666654 3432 235677777777777766666777777777777777777776677777777777777777
Q ss_pred cc-ccCCCCCCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCC
Q 043900 357 NK-FLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGS 434 (953)
Q Consensus 357 N~-l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~ 434 (953)
|+ +....|..+..+ .+++|++++|.+++..|..|.++++|++|+|++|+++ +.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------AL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------cc
Confidence 76 554445555544 3455555555555555555555555555555555554 33
Q ss_pred CCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCcccccc
Q 043900 435 IPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGF 514 (953)
Q Consensus 435 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 514 (953)
.+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 33444555555555555555554334445555555555555555555445555555555555555555554444445555
Q ss_pred ccCceEeccCCcCcccCC
Q 043900 515 QLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 515 ~~L~~l~l~~N~l~~~~p 532 (953)
++|+.|++++|++.+..+
T Consensus 225 ~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTCCEEECCSSCEECSGG
T ss_pred cccCEEeccCCCccCCCC
Confidence 555555555555554433
No 317
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.1e-28 Score=264.68 Aligned_cols=249 Identities=22% Similarity=0.231 Sum_probs=209.2
Q ss_pred cccccccEEeccCCcccccCChhhhhccccCcEEEcccCccc-ccCCcccc-------CCCCCCEEEeecCcccccCCcC
Q 043900 271 TNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIF-GNIPAAIG-------KFVNLQRLEMWNNRLSGTIPPA 342 (953)
Q Consensus 271 ~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~-~~~~~~~~-------~l~~L~~L~L~~N~i~~~~~~~ 342 (953)
...++|+.|++++|.+ .+|..+... ++.|++++|.+. ...|..+. ++++|++|+|++|.+++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456788889999999 778777654 889999999994 44565555 7899999999999999888887
Q ss_pred c--cCCCCCCeEEeccccccCCCCCCCCCc------eeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCC--CCc
Q 043900 343 I--GELQNLRELRLQRNKFLGNIPPSIGNL------KVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGT--IPP 412 (953)
Q Consensus 343 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l------~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~ 412 (953)
+ ..+++|++|+|++|++++. |..++.+ .+++|+|++|.+++..|..|+.+++|++|+|++|++.+. +|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8999999999999999977 7777654 579999999999998889999999999999999998764 233
Q ss_pred cc-cCccccceeeeccCCcccCC---CCccccCCCccceeeecCCcccccCC-CCccCCccccEEEccCccccCCCCccc
Q 043900 413 QF-LGLSWLLIGLDLSRNQLTGS---IPSEVGNLKNLEVLDVFENKLKGEIP-STLGSCKKLEQLEMQGNFLQGPIPSSL 487 (953)
Q Consensus 413 ~~-~~~~~~l~~L~ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~ 487 (953)
.+ +.....++.|+|++|+|++. ....+.++++|+.|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 24445677999999999832 22445688999999999999998775 56777899999999999999 788877
Q ss_pred cCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCccc
Q 043900 488 SSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGM 530 (953)
Q Consensus 488 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 530 (953)
. ++|++|||++|+|++. |. +..+++|+.|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7 8999999999999976 66 88999999999999999863
No 318
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-28 Score=268.08 Aligned_cols=216 Identities=20% Similarity=0.214 Sum_probs=176.2
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+++.|||++|++.+..|..+.++++|++|+|++|++++..| |..+++|++|+|++|+|++ ++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 468999999999987666799999999999999999998554 9999999999999999984 33 3489999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccc-cccccccceecccccccC
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTF-GWLKNLATLAMAENWLSG 162 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~ 162 (953)
++|.+++..+.. +++|++|++++|++++..+..|+.+++|++|+|++|++++..+..+ ..+++|++|+|++|+|++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999999665544 5789999999999998888899999999999999999998777776 478999999999999984
Q ss_pred CCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEccccccc
Q 043900 163 TIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLT 234 (953)
Q Consensus 163 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (953)
+|.. ..+++|++|+|++|++++ +|..+. .+++|+.|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 184 -~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 184 -VKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -EECC-CCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred -cccc-cccccCCEEECCCCcCCc-chhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 3433 347788888888888884 444443 6777777777777777 45666666666666666666665
No 319
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=2.8e-28 Score=284.63 Aligned_cols=186 Identities=18% Similarity=0.051 Sum_probs=128.9
Q ss_pred cccccceeeEEEEEEcCCCeEEEEEEeeccc----------hhhHHHHHHHHHHHhhc-CCCCeeEEEeeecccccCCCC
Q 043900 638 EIGVGSFGSVYKGILDQGKTTVAVKVFNLLH----------HGAFKSFIAECNTLKNI-RHRNLVKILTACSGVDYQGND 706 (953)
Q Consensus 638 ~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 706 (953)
..+.|++|.+..++....++.||+|++.... ....+++.+|+++|+++ +|+||+++++++ +++.
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~-----ed~~ 315 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHG-----ENAQ 315 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEE-----ECSS
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEE-----EECC
Confidence 3566777777776666566789999996321 22346799999999999 799999999994 4568
Q ss_pred ceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEE
Q 043900 707 FKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAH 786 (953)
Q Consensus 707 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 786 (953)
..||||||++|++|.+++... ..++.. +|+.||+.||+|+|++ |||||||||+|||++++|.+|
T Consensus 316 ~~yLVMEyv~G~~L~d~i~~~----------~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vK 379 (569)
T 4azs_A 316 SGWLVMEKLPGRLLSDMLAAG----------EEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHAR 379 (569)
T ss_dssp EEEEEEECCCSEEHHHHHHTT----------CCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEE
T ss_pred EEEEEEecCCCCcHHHHHHhC----------CCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEE
Confidence 899999999999999999632 245543 5899999999999999 999999999999999999999
Q ss_pred EeccccceecCCCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCC
Q 043900 787 VSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKP 847 (953)
Q Consensus 787 L~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~p 847 (953)
|+|||+|+...... ......+||+.|||||++.+ .+..++|+||+|++++++.++..|
T Consensus 380 L~DFGlAr~~~~~~--~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 380 LIDFGSIVTTPQDC--SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp ECCCTTEESCC-----CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred EeecccCeeCCCCC--ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 99999998764322 23344679999999999876 467789999999998887766544
No 320
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=5.1e-26 Score=242.85 Aligned_cols=227 Identities=20% Similarity=0.206 Sum_probs=198.9
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE 87 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 87 (953)
.++-++.++. .+|..+. ++|++|+|++|+++++.+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3556666665 7888664 579999999999999888899999999999999999997777899999999999999999
Q ss_pred ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccccccccc-CCccccccccccceecccccccCCCCC
Q 043900 88 LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGG-IPDTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
+++..+..|.++++|++|++++|++++..+..++++++|++|++++|++++. +|+.|..+++|++|+|++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9988888999999999999999999977777899999999999999999864 589999999999999999999977777
Q ss_pred cccccccce----EEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCC
Q 043900 167 SIFNISSIT----AFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPY 239 (953)
Q Consensus 167 ~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (953)
.+..+.+|+ .|++++|++++..+..+ ...+|+.|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred HhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 888888777 89999999995544443 345899999999999987777889999999999999999876543
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-26 Score=266.75 Aligned_cols=215 Identities=23% Similarity=0.163 Sum_probs=141.5
Q ss_pred cCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccC
Q 043900 300 TLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSC 379 (953)
Q Consensus 300 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~ 379 (953)
+|+.|+|++|.+++..|..|..+++|++|+|++|.|++..| |..+++|++|+|++|.|++..+. ..+++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 56677777777766666666777777777777777765444 66667777777777766643322 3456677777
Q ss_pred CcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCcccc-CCCccceeeecCCccccc
Q 043900 380 NFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVG-NLKNLEVLDVFENKLKGE 458 (953)
Q Consensus 380 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 458 (953)
|.+++..+. .+++|+.|+|++|++++..|..+..+ ..++.|+|++|.+++..|..|. .+++|+.|+|++|.|++.
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 777655443 24567777777777775545444433 3455777777777766666665 677777777777777754
Q ss_pred CCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCc
Q 043900 459 IPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLE 528 (953)
Q Consensus 459 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 528 (953)
|. +..+++|+.|+|++|+|++. |..+..+++|+.|+|++|+|++ +|..+..+++|+.|++++|++.
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 22 33477777777777777753 3447777777777777777774 5666777777777777777776
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.2e-26 Score=261.53 Aligned_cols=217 Identities=18% Similarity=0.162 Sum_probs=182.8
Q ss_pred cCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccce
Q 043900 25 GNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEH 104 (953)
Q Consensus 25 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (953)
...++|++|+|++|++++..|..|..+++|++|+|++|.|++..| |..+++|++|+|++|.|++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 344489999999999999888899999999999999999996665 9999999999999999985432 389999
Q ss_pred eeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCccc-ccccceEEecCCcc
Q 043900 105 LSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIF-NISSITAFDAGMNQ 183 (953)
Q Consensus 105 L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~ 183 (953)
|++++|.|++..+. .+++|++|+|++|.+++..|..|+.+++|++|+|++|++++..|..+. .+++|+.|+|++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999976664 457899999999999988899999999999999999999988888886 78999999999999
Q ss_pred cccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccc
Q 043900 184 LQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENS 255 (953)
Q Consensus 184 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~ 255 (953)
|++..+ .. .+++|+.|+|++|+|++. |..+..+++|+.|++++|.+++.++.+..+++|+.+++++|.
T Consensus 181 l~~~~~-~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 181 IYDVKG-QV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCEEEC-CC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccccc-cc--cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 996633 22 489999999999999964 445889999999999999999876655555555554444443
No 323
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.4e-24 Score=232.46 Aligned_cols=205 Identities=20% Similarity=0.194 Sum_probs=176.5
Q ss_pred cccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 23 HVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 23 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
.+.++++++++++++|+++. +|..+. +++++|+|++|.|++..|..|.++++|++|+|++|.|++..+ . +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcC
Confidence 36788899999999999997 665554 689999999999998888899999999999999999985433 2 789999
Q ss_pred ceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCc
Q 043900 103 EHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMN 182 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 182 (953)
++|+|++|+++ .+|..+.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..+..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 78888999999999999999999777888999999999999999999666677788999999999999
Q ss_pred ccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccC
Q 043900 183 QLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTG 235 (953)
Q Consensus 183 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (953)
+|+ .+|...+..+++|+.|+|++|+|+ .+|..+..+.+|+.|++++|.+..
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 998 566666657889999999999988 677777778888888888888864
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1e-24 Score=232.77 Aligned_cols=206 Identities=21% Similarity=0.196 Sum_probs=185.9
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
..++.|+|+++++.+..+..+.++++|++|+|++|+++++.+..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46899999999998666669999999999999999999988889999999999999999999888899999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccc-cCCcccCCCcccEEecccccccccCCcccccccccc----ceecccc
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGS-IPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLA----TLAMAEN 158 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N 158 (953)
++|.+++..+..++++++|++|++++|++++. +|..|+++++|++|+|++|++++..+..|..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977777899999999999999999864 589999999999999999999988888999999888 8999999
Q ss_pred cccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccC
Q 043900 159 WLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTG 211 (953)
Q Consensus 159 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 211 (953)
+++ .+|.......+|+.|++++|+++ .+|...+..+++|+.|++++|.+.+
T Consensus 188 ~l~-~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCC-EECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccc-ccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence 999 45555555669999999999999 4566665689999999999999985
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.9e-24 Score=228.12 Aligned_cols=205 Identities=20% Similarity=0.167 Sum_probs=161.0
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
..+++++++++++. +|..+. .+|++|+|++|+|++..+..|.++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46788888888886 665554 578888888888886666678888888888888888885555567788888888888
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVI 188 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 188 (953)
+|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888666667788888888888888888777777888888888888888888555556778888888888888888544
Q ss_pred ccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcC
Q 043900 189 PLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEV 237 (953)
Q Consensus 189 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (953)
+ ..+..+++|++|++++|++++..+..|..+++|+.|++++|.+....
T Consensus 174 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 174 E-GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp T-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred h-hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 3 33347888888888888888777777888889999999998887543
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=230.12 Aligned_cols=204 Identities=22% Similarity=0.240 Sum_probs=183.6
Q ss_pred cEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEecc
Q 043900 5 RVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLF 84 (953)
Q Consensus 5 ~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 84 (953)
.++.++++++++. .+|..+. +++++|+|++|+++.+.+.+|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3567999999997 7888765 689999999999999888899999999999999999996656667999999999999
Q ss_pred CccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCC
Q 043900 85 YNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTI 164 (953)
Q Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 164 (953)
+|.+++..+..|.++++|++|++++|++++..+..|+++++|++|+|++|+|++..+..|..+++|++|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99999777778899999999999999999888888999999999999999999777778999999999999999999776
Q ss_pred CCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCC
Q 043900 165 PSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGA 212 (953)
Q Consensus 165 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 212 (953)
+..+.++++|+.|+|++|++++ +|...+..+++|+.|++++|.+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeCC
Confidence 7779999999999999999995 5555555899999999999998743
No 327
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.3e-28 Score=289.51 Aligned_cols=443 Identities=13% Similarity=0.105 Sum_probs=229.2
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCc---CCCcc------------CCCCCCCcEEeCCCCccccccCcCc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNH---GIPSE------------FDRLQRLQVLALNNNSIGGEIPANI 72 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~------------~~~l~~L~~L~L~~n~i~~~~p~~~ 72 (953)
.++++.+... .....+..+++|++|+|++|.... ..|.. +..+++|++|+|++|.+++..+..+
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 4555555432 222345667888888888875321 12222 2356788888888888877666666
Q ss_pred c-CCCCCcEEeccCc-ccccc-CCcccCCccccceeeccccccccccCCcc----cCCCcccEEecccccccccCCcc--
Q 043900 73 S-SCSNLIQIRLFYN-ELVGK-IPSELGSLSKIEHLSVSVNNLTGSIPSSL----GNLSSINTLFLTDNNLDGGIPDT-- 143 (953)
Q Consensus 73 ~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~L~~L~~L~L~~N~l~~~~~~~-- 143 (953)
. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+ ..+++|++|++++|. .......
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~ 204 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALE 204 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence 5 6788888888887 45422 33344477888888888888765444333 356688888888876 2111222
Q ss_pred --ccccccccceecccc-cccCCCCCcccccccceEEecCCc-------ccccccccccccccccccEE-EeeCccccCC
Q 043900 144 --FGWLKNLATLAMAEN-WLSGTIPSSIFNISSITAFDAGMN-------QLQGVIPLDFGFTLQNLQFF-SVFENQLTGA 212 (953)
Q Consensus 144 --~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-------~l~~~~~~~~~~~l~~L~~L-~L~~N~l~~~ 212 (953)
+..+++|++|+|++| .+. .+|..+..+++|++|+++.+ .+.+ ++..+ .++++|+.| .+.+... ..
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l-~~~~~L~~Ls~~~~~~~-~~ 280 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL-SGCKELRCLSGFWDAVP-AY 280 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH-HTCTTCCEEECCBTCCG-GG
T ss_pred HHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH-hcCCCcccccCCcccch-hh
Confidence 344578888888877 444 35666667777777774433 3332 22233 256666666 2322221 12
Q ss_pred CCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCCh
Q 043900 213 IPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPA 292 (953)
Q Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~ 292 (953)
++..+..+++|+.|++++|.++.... ...+..+++|++|++++| +......
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l----------------------------~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDL----------------------------VKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHH----------------------------HHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHH----------------------------HHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 33333355666666666665442110 001223344555555544 2211112
Q ss_pred hhhhccccCcEEEcc---------cCcccccCCcccc-CCCCCCEEEeecCcccccCCcCcc-CCCCCCeEEeccccccC
Q 043900 293 CISNLSTTLEMLLLD---------NNKIFGNIPAAIG-KFVNLQRLEMWNNRLSGTIPPAIG-ELQNLRELRLQRNKFLG 361 (953)
Q Consensus 293 ~~~~~~~~L~~L~L~---------~N~i~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~ 361 (953)
.+....++|+.|++. .+.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+|+.|...
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~- 410 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK- 410 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-
Confidence 222222456666662 2333322222222 356666666666666654444443 3566666666622110
Q ss_pred CCCCCCCCceeeEEEccCCcCCC-----CCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCC
Q 043900 362 NIPPSIGNLKVFNLDLSCNFLQG-----SIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIP 436 (953)
Q Consensus 362 ~~p~~~~~l~l~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~ 436 (953)
..|.++. .++..+..+++|+.|+|++ .+++..+..+..
T Consensus 411 ----------------~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------------------- 453 (594)
T 2p1m_B 411 ----------------APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------------------- 453 (594)
T ss_dssp ----------------CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------
T ss_pred ----------------CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------
Confidence 0011111 1111244566777777755 444221111111
Q ss_pred ccccCCCccceeeecCCcccccCCCCc-cCCccccEEEccCccccCCCCc-cccCCCCCcEEECCCCcccccCCccc-cc
Q 043900 437 SEVGNLKNLEVLDVFENKLKGEIPSTL-GSCKKLEQLEMQGNFLQGPIPS-SLSSLKGLNVLDLSQNNLSGKIPEFL-VG 513 (953)
Q Consensus 437 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~ 513 (953)
.+++|+.|+|++|.+++..+..+ .++++|+.|+|++|.+++..+. .+..+++|+.|+|++|+++..-...+ ..
T Consensus 454 ----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 454 ----YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp ----HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred ----hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 14556666666666554333333 4456666666666666433322 22335666666666666643322223 34
Q ss_pred cccCceEeccCCcC
Q 043900 514 FQLLENLNLSNNNL 527 (953)
Q Consensus 514 l~~L~~l~l~~N~l 527 (953)
+++|+...+..+.-
T Consensus 530 lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 530 MPKLNVEVIDERGA 543 (594)
T ss_dssp CTTEEEEEECSSSC
T ss_pred CCCCEEEEecCCCc
Confidence 55555555555543
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-24 Score=231.29 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=169.9
Q ss_pred cccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 23 HVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 23 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
.+..+++|++|++++|.++. + ..+..+++|++|+|++|.+++ + ..+..+++|++|+|++|.+++..+..|+++++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 35678888999999999886 3 358888999999999999874 3 478889999999999999987777778889999
Q ss_pred ceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCc
Q 043900 103 EHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMN 182 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 182 (953)
++|++++|++++..+..|+++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 99999999998777777888999999999999998777777888999999999999998766667788899999999999
Q ss_pred ccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCC
Q 043900 183 QLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPY 239 (953)
Q Consensus 183 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (953)
++++..+..+ ..+++|++|++++|.+.+ .+++|+.|++..|.++|.+|.
T Consensus 192 ~l~~~~~~~~-~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 192 QLKSVPDGVF-DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSCCCTTTT-TTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred cCCccCHHHH-hCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 9986555444 478899999999998874 356788888999999887664
No 329
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.6e-27 Score=284.47 Aligned_cols=214 Identities=16% Similarity=0.079 Sum_probs=131.5
Q ss_pred ccCcEEEcccCcccccCC-ccccCCCCCCEEEeecCccccc-CCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEE
Q 043900 299 TTLEMLLLDNNKIFGNIP-AAIGKFVNLQRLEMWNNRLSGT-IPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLD 376 (953)
Q Consensus 299 ~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~ 376 (953)
++|+.|++++|.+++... ..+..+++|+.|++++| +... .+.....+++|++|+|+++.-.| .
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g--------------~ 353 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV--------------M 353 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC--------------S
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc--------------c
Confidence 578888888887654322 22457788888888887 4422 22223357888888885432100 0
Q ss_pred ccCCcCCCCCCccC-CCCCCCcEEEcCCCccCCCCCccccCccccceeeecc--C----CcccCC-----CCccccCCCc
Q 043900 377 LSCNFLQGSIPSSL-GQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLS--R----NQLTGS-----IPSEVGNLKN 444 (953)
Q Consensus 377 L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls--~----N~l~~~-----~~~~~~~l~~ 444 (953)
.+.|.+++.....+ ..+++|+.|.++.|.+++..+..+....+.++.|+++ + |.++.. ++..+..+++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 01111111111111 1245566666665655533333332222344556665 3 444421 1223567889
Q ss_pred cceeeecCCcccccCCCCccC-CccccEEEccCccccCCCCccc-cCCCCCcEEECCCCcccccCCc-cccccccCceEe
Q 043900 445 LEVLDVFENKLKGEIPSTLGS-CKKLEQLEMQGNFLQGPIPSSL-SSLKGLNVLDLSQNNLSGKIPE-FLVGFQLLENLN 521 (953)
Q Consensus 445 L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~ 521 (953)
|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|+.|+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 99999987 676555555555 8899999999999986655555 6689999999999999754443 445689999999
Q ss_pred ccCCcCc
Q 043900 522 LSNNNLE 528 (953)
Q Consensus 522 l~~N~l~ 528 (953)
+++|+++
T Consensus 513 l~~~~~~ 519 (594)
T 2p1m_B 513 MSSCSVS 519 (594)
T ss_dssp EESSCCB
T ss_pred eeCCCCC
Confidence 9999874
No 330
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=8.9e-25 Score=232.28 Aligned_cols=204 Identities=22% Similarity=0.229 Sum_probs=177.1
Q ss_pred CCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccccee
Q 043900 26 NLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHL 105 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (953)
.+..+..++++++.+... ..+..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+++ + ..++.+++|++|
T Consensus 17 ~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred hHHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence 455677889999988874 44678999999999999997 444 58999999999999999985 3 478999999999
Q ss_pred eccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccc
Q 043900 106 SVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 106 ~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
+|++|++++..+..|+++++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|+++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 99999999887888999999999999999999888888999999999999999999776777889999999999999999
Q ss_pred cccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCc
Q 043900 186 GVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGE 236 (953)
Q Consensus 186 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (953)
+..+ ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 171 SLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCH-HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 5444 4444789999999999999988888889999999999999988754
No 331
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.90 E-value=1.1e-24 Score=253.09 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=141.0
Q ss_pred CcccCcccccceeeEEEEEEcCCCeEEEEEEeeccc--------hhhHHHHHHHHHHHhhcCCCCeeEEEeeecccccCC
Q 043900 633 FASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLH--------HGAFKSFIAECNTLKNIRHRNLVKILTACSGVDYQG 704 (953)
Q Consensus 633 ~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 704 (953)
+...+.||+|+||.||+|.... +.+|+|+..... ....+++.+|++++++++||||+++..++..
T Consensus 338 ~~~~~~LG~G~fg~Vy~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~----- 410 (540)
T 3en9_A 338 KIPEHLIGKGAEADIKRDSYLD--FDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD----- 410 (540)
T ss_dssp ----------CCEEEEEEECSS--CEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-----
T ss_pred CCCCCEEeeCCCEEEEEEEECC--CeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-----
Confidence 3456789999999999995543 478888864211 1123568999999999999999944444321
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCc
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMM 784 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 784 (953)
.+..++||||+++++|.+++.. +..++.|+++||+|||++ +|+||||||+|||++. .
T Consensus 411 ~~~~~lVmE~~~ggsL~~~l~~------------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~ 467 (540)
T 3en9_A 411 LDNKRIMMSYINGKLAKDVIED------------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--D 467 (540)
T ss_dssp TTTTEEEEECCCSEEHHHHSTT------------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--S
T ss_pred CCccEEEEECCCCCCHHHHHHH------------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--e
Confidence 2456999999999999999952 458999999999999999 9999999999999998 9
Q ss_pred EEEeccccceecCCCCCcc-----cccccccccccccccccCC--CCCCcccchHHHHHHHHHHHhCCCCCC
Q 043900 785 AHVSDFGLARFLPLSPAQT-----SSIDAKGSIGYIAPEYGLG--SEVSINGDVYSYGILLLELVTRKKPVD 849 (953)
Q Consensus 785 ~kL~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~sDv~slG~vl~elltg~~pf~ 849 (953)
+||+|||+|+......... ......||+.|||||++.+ ..|+..+|+|+..+-..+-+.++.+|.
T Consensus 468 ~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 468 LYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp EEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred EEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 9999999999874322111 1134569999999999887 567888999999999999888877763
No 332
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.5e-23 Score=222.76 Aligned_cols=204 Identities=18% Similarity=0.171 Sum_probs=182.4
Q ss_pred cCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcc
Q 043900 47 EFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSI 126 (953)
Q Consensus 47 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L 126 (953)
.+.++++++++++++|+++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|+|++..+ . +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcC
Confidence 4778899999999999999 7887775 799999999999998888999999999999999999995443 3 899999
Q ss_pred cEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeC
Q 043900 127 NTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFE 206 (953)
Q Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 206 (953)
++|+|++|+|+ .+|..+..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++ +|...+..+++|+.|+|++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCC
Confidence 99999999998 788899999999999999999997777889999999999999999994 5555555899999999999
Q ss_pred ccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccC
Q 043900 207 NQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLG 257 (953)
Q Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~ 257 (953)
|+|+...+..|..+++|+.|++++|+++..++.+.....|+.+++.+|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 999987778889999999999999999988888877778888888887764
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=8.7e-24 Score=220.15 Aligned_cols=203 Identities=19% Similarity=0.176 Sum_probs=128.1
Q ss_pred ecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCc-cccccCcCccCCCCCcEEeccC-ccccccCCccc
Q 043900 19 SISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNS-IGGEIPANISSCSNLIQIRLFY-NELVGKIPSEL 96 (953)
Q Consensus 19 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~ 96 (953)
.+|. +. .+|++|+|++|+++++.+.+|.++++|++|+|++|. +++..+..|.++++|++|+|++ |.+++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5555 32 267777777777777666667777777777777775 6655555677777777777776 77775555667
Q ss_pred CCccccceeeccccccccccCCcccCCCccc---EEecccc-cccccCCcccccccccc-ceecccccccCCCCCccccc
Q 043900 97 GSLSKIEHLSVSVNNLTGSIPSSLGNLSSIN---TLFLTDN-NLDGGIPDTFGWLKNLA-TLAMAENWLSGTIPSSIFNI 171 (953)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l 171 (953)
.++++|++|++++|++++ +|. |+.+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++ .+|...+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 777777777777777763 554 66666666 7777777 67655566677777777 7777777776 444444333
Q ss_pred ccceEEecCCcc-ccccccccccccc-ccccEEEeeCccccCCCCCCCcCCCCCcEEEcccc
Q 043900 172 SSITAFDAGMNQ-LQGVIPLDFGFTL-QNLQFFSVFENQLTGAIPPAISNASNLELFQADVN 231 (953)
Q Consensus 172 ~~L~~L~L~~N~-l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (953)
++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|+++...+. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 666666666664 66 3333333355 6666666666666633222 3455555555543
No 334
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.9e-23 Score=217.67 Aligned_cols=212 Identities=17% Similarity=0.156 Sum_probs=179.6
Q ss_pred eecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc-ccccCCcccCCccccceeeccc-c
Q 043900 33 LLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE-LVGKIPSELGSLSKIEHLSVSV-N 110 (953)
Q Consensus 33 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-N 110 (953)
++++-++++. +|. +. .+|++|+|++|+|++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |
T Consensus 16 ~~v~c~~l~~-ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 16 FRVTCKDIQR-IPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TEEEECSCSS-CCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred ceeEccCccc-cCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 3333334776 665 44 389999999999997777799999999999999997 9877777899999999999999 9
Q ss_pred ccccccCCcccCCCcccEEecccccccccCCcccccccccc---ceecccc-cccCCCCCcccccccce-EEecCCcccc
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLA---TLAMAEN-WLSGTIPSSIFNISSIT-AFDAGMNQLQ 185 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~ 185 (953)
++++..+.+|.++++|++|++++|++++ +|+ |..+++|+ +|++++| ++++..+..|.++++|+ .|++++|+++
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 9997777899999999999999999995 666 89999998 9999999 99966667799999999 9999999999
Q ss_pred cccccccccccccccEEEeeCcc-ccCCCCCCCcCC-CCCcEEEcccccccCcCCCCCCCCccceeeeccc
Q 043900 186 GVIPLDFGFTLQNLQFFSVFENQ-LTGAIPPAISNA-SNLELFQADVNKLTGEVPYLEKPQRLSVFSITEN 254 (953)
Q Consensus 186 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n 254 (953)
.+|...+.. ++|+.|++++|+ ++...+..|.++ ++|+.|++++|+++..++. .+.+|+.|.+.++
T Consensus 170 -~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred -ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 777766644 899999999995 997778899999 9999999999999977654 4555665555443
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=3.4e-24 Score=232.59 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=87.8
Q ss_pred CCcEEeCCCCccccccCcCc--cCCCCCcEEeccCccccccCC----cccCCccccceeeccccccccccCCcccCCCcc
Q 043900 53 RLQVLALNNNSIGGEIPANI--SSCSNLIQIRLFYNELVGKIP----SELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSI 126 (953)
Q Consensus 53 ~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L 126 (953)
+|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..|..|+++++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444444 444444444444444443222 222344444444444444444444444444444
Q ss_pred cEEeccccccccc---C-CccccccccccceecccccccCCCCC----cccccccceEEecCCcccccccccccccc--c
Q 043900 127 NTLFLTDNNLDGG---I-PDTFGWLKNLATLAMAENWLSGTIPS----SIFNISSITAFDAGMNQLQGVIPLDFGFT--L 196 (953)
Q Consensus 127 ~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~~~~~~~~--l 196 (953)
++|+|++|++.+. . +..++.+++|++|+|++|+++ .+|. .+.++++|++|||++|++++..|..+..- +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 4444444444321 1 112234444444444444443 2222 12334444444555554444434333311 1
Q ss_pred ccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccC
Q 043900 197 QNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLG 257 (953)
Q Consensus 197 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~ 257 (953)
++|++|+|++|+|+ .+|..+. ++|+.|++++|++++. |.+..+++|+.+++++|.+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 34555555555554 3333332 4555555555555543 22344455555555555544
No 336
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=7.7e-25 Score=243.25 Aligned_cols=263 Identities=14% Similarity=0.088 Sum_probs=153.0
Q ss_pred eeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccC----cCccCCC-CCcEEeccCccccccCCcccCCc-----cc
Q 043900 32 VLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIP----ANISSCS-NLIQIRLFYNELVGKIPSELGSL-----SK 101 (953)
Q Consensus 32 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 101 (953)
++.|++|++++.+|..+...++|++|||++|.|++..+ ..|..++ +|++|+|++|.+++..+..|+.+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777666655666667777777777775444 5566666 67777777777765555555554 66
Q ss_pred cceeeccccccccccCCcc----cCC-CcccEEecccccccccCCccccc-----cccccceecccccccCCCCCccccc
Q 043900 102 IEHLSVSVNNLTGSIPSSL----GNL-SSINTLFLTDNNLDGGIPDTFGW-----LKNLATLAMAENWLSGTIPSSIFNI 171 (953)
Q Consensus 102 L~~L~Ls~N~l~~~~p~~~----~~L-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l 171 (953)
|++|+|++|++++..+..+ ..+ ++|++|+|++|+|+...+..|.. .++|++|+|++|++++..+..+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--- 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL--- 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence 6666666666665444433 223 56666666666666444443332 1355555555555542221111
Q ss_pred ccceEEecCCcccccccccccccccc-cccEEEeeCccccCCCCCCC----cCC-CCCcEEEcccccccCcCCCCCCCCc
Q 043900 172 SSITAFDAGMNQLQGVIPLDFGFTLQ-NLQFFSVFENQLTGAIPPAI----SNA-SNLELFQADVNKLTGEVPYLEKPQR 245 (953)
Q Consensus 172 ~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~~~~~l~~~~~ 245 (953)
+..+. .++ +|++|+|++|+|++..+..+ ..+ ++|++|++++|.++....
T Consensus 159 -----------------~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~------- 213 (362)
T 3goz_A 159 -----------------IQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY------- 213 (362)
T ss_dssp -----------------HHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-------
T ss_pred -----------------HHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-------
Confidence 11111 122 44444444444443333222 223 356666666665542100
Q ss_pred cceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCC----ccccC
Q 043900 246 LSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIP----AAIGK 321 (953)
Q Consensus 246 L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~----~~~~~ 321 (953)
..++..+...+++|+.|+|++|.+++..+ ..+..
T Consensus 214 ------------------------------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 214 ------------------------------------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp ------------------------------------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred ------------------------------------------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 02344455544578888888888876544 33567
Q ss_pred CCCCCEEEeecCccccc-------CCcCccCCCCCCeEEeccccccCCCC
Q 043900 322 FVNLQRLEMWNNRLSGT-------IPPAIGELQNLRELRLQRNKFLGNIP 364 (953)
Q Consensus 322 l~~L~~L~L~~N~i~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~p 364 (953)
+++|+.|+|++|.+.+. ++..+..+++|++|++++|++....+
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 78899999999985432 34567788889999999999876533
No 337
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.1e-25 Score=244.06 Aligned_cols=267 Identities=19% Similarity=0.129 Sum_probs=205.5
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCC----ccCCCCC-CCcEEeCCCCccccccCcCccCC-----CC
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIP----SEFDRLQ-RLQVLALNNNSIGGEIPANISSC-----SN 77 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~l-----~~ 77 (953)
.++|+.+++.+.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999999999888888889999999999999766 7888998 99999999999998878888775 99
Q ss_pred CcEEeccCccccccCCcccCCc-----cccceeeccccccccccCCcc----cC-CCcccEEecccccccccCC----cc
Q 043900 78 LIQIRLFYNELVGKIPSELGSL-----SKIEHLSVSVNNLTGSIPSSL----GN-LSSINTLFLTDNNLDGGIP----DT 143 (953)
Q Consensus 78 L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~----~~-L~~L~~L~L~~N~l~~~~~----~~ 143 (953)
|++|+|++|.+++..+..++.. ++|++|+|++|++++..+..+ .. .++|++|+|++|+++...+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999997777655543 899999999999987665544 34 3699999999999985444 34
Q ss_pred ccccc-cccceecccccccCCCCCccc----cc-ccceEEecCCcccccc----cccccccccccccEEEeeCccccCCC
Q 043900 144 FGWLK-NLATLAMAENWLSGTIPSSIF----NI-SSITAFDAGMNQLQGV----IPLDFGFTLQNLQFFSVFENQLTGAI 213 (953)
Q Consensus 144 ~~~l~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~L~~N~l~~~~ 213 (953)
+..++ +|++|+|++|+|++..+..+. .+ ++|++|||++|+|++. ++..+....++|++|+|++|+|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45565 999999999999876665544 34 6999999999999863 44444433468999999999998655
Q ss_pred C----CCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCccccc
Q 043900 214 P----PAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGL 289 (953)
Q Consensus 214 ~----~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~ 289 (953)
+ ..+..+++|+.|++++|.+....+.. .......+..+++|+.|++++|.+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~----------------------~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ----------------------CKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH----------------------HHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHH----------------------HHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 45677889999999999865432210 000112344566677777777777666
Q ss_pred CChhhhh
Q 043900 290 LPACISN 296 (953)
Q Consensus 290 ~p~~~~~ 296 (953)
.+..+..
T Consensus 300 ~~~~~~~ 306 (362)
T 3goz_A 300 HSIPISN 306 (362)
T ss_dssp GCHHHHH
T ss_pred chHHHHH
Confidence 5555443
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.5e-22 Score=212.28 Aligned_cols=177 Identities=22% Similarity=0.290 Sum_probs=84.6
Q ss_pred CceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccc
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSV 109 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (953)
.+++++++++++. +|..+. .+|+.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 3444555555544 333332 3445555555555444444445555555555555555444444445555555555555
Q ss_pred cccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccccc
Q 043900 110 NNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIP 189 (953)
Q Consensus 110 N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 189 (953)
|++++..+..|+++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55544444444555555555555555544444444555555555555555543333344455555555555555553222
Q ss_pred cccccccccccEEEeeCcccc
Q 043900 190 LDFGFTLQNLQFFSVFENQLT 210 (953)
Q Consensus 190 ~~~~~~l~~L~~L~L~~N~l~ 210 (953)
..+ ..+++|+.|++++|++.
T Consensus 173 ~~~-~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAF-DRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTT-TTCTTCCEEECCSCCBC
T ss_pred HHH-hCCCCCCEEEeeCCcee
Confidence 222 24555555555555554
No 339
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.1e-23 Score=222.21 Aligned_cols=201 Identities=22% Similarity=0.232 Sum_probs=142.7
Q ss_pred CCCCEEEeecCcccccCCcCc--cCCCCCCeEEeccccccCCCCC----CCCCc-eeeEEEccCCcCCCCCCccCCCCCC
Q 043900 323 VNLQRLEMWNNRLSGTIPPAI--GELQNLRELRLQRNKFLGNIPP----SIGNL-KVFNLDLSCNFLQGSIPSSLGQYKT 395 (953)
Q Consensus 323 ~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p~----~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~ 395 (953)
++|++|++++|.+++..|..+ ..+++|++|+|++|++++..+. .+..+ .+++|+|++|.+.+..|..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555555 5555566666666655543331 11222 4556666666666677778888888
Q ss_pred CcEEEcCCCccCCC--CC-ccccCccccceeeeccCCcccCCCCc----cccCCCccceeeecCCcccccCCCCccCC--
Q 043900 396 LTIIDLSDNNLTGT--IP-PQFLGLSWLLIGLDLSRNQLTGSIPS----EVGNLKNLEVLDVFENKLKGEIPSTLGSC-- 466 (953)
Q Consensus 396 L~~L~L~~N~l~~~--~p-~~~~~~~~~l~~L~ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-- 466 (953)
|++|+|++|++.+. ++ ..+.+....+++|+|++|+++. ++. .+..+++|++|+|++|+|++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 88888888887642 22 2222334466788888888873 333 35788999999999999998778888777
Q ss_pred -ccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcc
Q 043900 467 -KKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEG 529 (953)
Q Consensus 467 -~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 529 (953)
++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|+.|++++|+|+.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 6777775 7999999999999964 44 6788999999999999874
No 340
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=9.2e-23 Score=220.67 Aligned_cols=198 Identities=22% Similarity=0.345 Sum_probs=163.5
Q ss_pred ccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccc
Q 043900 24 VGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIE 103 (953)
Q Consensus 24 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (953)
+.++++|++|++++|+++. +| .+..+++|++|+|++|.+++ ++. +..+++|++|+|++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 4568889999999999987 44 68889999999999999984 444 8899999999999999984 33 688999999
Q ss_pred eeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcc
Q 043900 104 HLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQ 183 (953)
Q Consensus 104 ~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 183 (953)
+|++++|++++ ++ .+..+++|++|++++|++++..+ +..+++|++|+|++|++++ ++. +..+++|+.|++++|+
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 99999999985 44 38899999999999999985443 8889999999999999984 443 8888999999999999
Q ss_pred cccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCC
Q 043900 184 LQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVP 238 (953)
Q Consensus 184 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (953)
+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.+.
T Consensus 185 l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 185 ISDISP---LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCCGG---GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred cCcChh---hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 986544 347889999999999998654 37888999999999999886543
No 341
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.1e-22 Score=209.99 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=126.1
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
+.+|++++++. .+|..+. +++++|+|++|+++++.+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45677777765 6666554 46777777777777766667777777777777777777666666777777777777777
Q ss_pred cccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
.+++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 77766566677777777777777777755555667777777777777777766666677777777777777777755555
Q ss_pred cccccccceEEecCCcccccc
Q 043900 167 SIFNISSITAFDAGMNQLQGV 187 (953)
Q Consensus 167 ~l~~l~~L~~L~L~~N~l~~~ 187 (953)
.+..+++|+.|+|++|.+...
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 677777777777777777643
No 342
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.88 E-value=8e-23 Score=217.19 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=120.1
Q ss_pred HHHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch------------------hhHHHHHHHHHHHhhcC
Q 043900 625 NLYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH------------------GAFKSFIAECNTLKNIR 686 (953)
Q Consensus 625 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~ 686 (953)
.+......|.+.+.||+|+||.||+|++ .+++.||+|+++.... .....+.+|++++++++
T Consensus 84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 84 RLVRSGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 3444556677889999999999999999 6677999999963221 13467889999999998
Q ss_pred CCCeeEEEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043900 687 HRNLVKILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPP 766 (953)
Q Consensus 687 h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ 766 (953)
|+++..+++. +..++||||+++|+|.+ +.. .+...++.|++.||+|||+. |
T Consensus 163 ~~~v~~~~~~---------~~~~lvmE~~~g~~L~~-l~~----------------~~~~~i~~qi~~~l~~lH~~---g 213 (282)
T 1zar_A 163 GLAVPKVYAW---------EGNAVLMELIDAKELYR-VRV----------------ENPDEVLDMILEEVAKFYHR---G 213 (282)
T ss_dssp TSSSCCEEEE---------ETTEEEEECCCCEEGGG-CCC----------------SCHHHHHHHHHHHHHHHHHT---T
T ss_pred CCCcCeEEec---------cceEEEEEecCCCcHHH-cch----------------hhHHHHHHHHHHHHHHHHHC---C
Confidence 5444443322 45699999999999998 521 12346999999999999999 9
Q ss_pred eEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCC
Q 043900 767 ITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLG 822 (953)
Q Consensus 767 ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 822 (953)
|+||||||+|||++ ++.+||+|||+|+. +..|+|||++.+
T Consensus 214 iiHrDlkp~NILl~-~~~vkl~DFG~a~~---------------~~~~~a~e~l~r 253 (282)
T 1zar_A 214 IVHGDLSQYNVLVS-EEGIWIIDFPQSVE---------------VGEEGWREILER 253 (282)
T ss_dssp EECSCCSTTSEEEE-TTEEEECCCTTCEE---------------TTSTTHHHHHHH
T ss_pred CEeCCCCHHHEEEE-CCcEEEEECCCCeE---------------CCCCCHHHHHHH
Confidence 99999999999999 99999999999973 345788998643
No 343
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=5.2e-22 Score=219.17 Aligned_cols=205 Identities=15% Similarity=0.095 Sum_probs=114.2
Q ss_pred EEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccC-cCccCCCCCcE-EeccCc
Q 043900 9 LNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIP-ANISSCSNLIQ-IRLFYN 86 (953)
Q Consensus 9 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~-L~L~~n 86 (953)
++-+++++. +||..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.++++|++ +.++.|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 444555554 556544 2456666666666666545556666666666666666544443 34556665543 444556
Q ss_pred cccccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccc-ccccccCCccccccc-cccceecccccccCCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTD-NNLDGGIPDTFGWLK-NLATLAMAENWLSGTI 164 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~ 164 (953)
+|+...|+.|.++++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+ .+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 66655556666666666666666666644444555555566666643 445544445555553 4556666666665 44
Q ss_pred CCcccccccceEEecCC-cccccccccccccccccccEEEeeCccccCCCCCCCc
Q 043900 165 PSSIFNISSITAFDAGM-NQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAIS 218 (953)
Q Consensus 165 p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 218 (953)
|...+...+|++|++++ |.++ .+|.+.+.++++|++|+|++|+|+...+..|.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 44444555566666653 3444 45554444566666666666666643333333
No 344
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.7e-24 Score=233.66 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=127.2
Q ss_pred CceeecCCCccCcCCCccCCCC--CCCcEEeCCCCccccccCcCccCCCCCcEEeccCcccccc-CCcccCCccccceee
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRL--QRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGK-IPSELGSLSKIEHLS 106 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 106 (953)
++.|++++|.+. |..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666666655 3445555 6666667777666644333 44566677777777666544 556666667777777
Q ss_pred ccccccccccCCcccCCCcccEEecccc-cccc-cCCccccccccccceecccc-cccCC-CCCcccccc-cceEEecCC
Q 043900 107 VSVNNLTGSIPSSLGNLSSINTLFLTDN-NLDG-GIPDTFGWLKNLATLAMAEN-WLSGT-IPSSIFNIS-SITAFDAGM 181 (953)
Q Consensus 107 Ls~N~l~~~~p~~~~~L~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L~~ 181 (953)
|++|++++..+..++.+++|++|+|++| .+++ .++..+..+++|++|+|++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777666666666666777777777776 4553 24555666777777777777 66532 455566666 777777777
Q ss_pred c--ccc-cccccccccccccccEEEeeCcc-ccCCCCCCCcCCCCCcEEEccccc
Q 043900 182 N--QLQ-GVIPLDFGFTLQNLQFFSVFENQ-LTGAIPPAISNASNLELFQADVNK 232 (953)
Q Consensus 182 N--~l~-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 232 (953)
| .++ +.++..+ ..+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 205 ~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 205 YRKNLQKSDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CGGGSCHHHHHHHH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CcccCCHHHHHHHH-hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 7 343 2334333 357777777777777 665666677777888888887775
No 345
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.7e-22 Score=215.11 Aligned_cols=191 Identities=21% Similarity=0.333 Sum_probs=168.4
Q ss_pred CcEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 4 QRVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.+++.|++++|++. .++ .+..+++|++|+|++|++++..+ |..+++|++|+|++|.+++ ++ .+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 36889999999997 566 68999999999999999998444 9999999999999999984 44 6999999999999
Q ss_pred cCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCC
Q 043900 84 FYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGT 163 (953)
Q Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 163 (953)
++|.+++ ++ .+..+++|++|++++|++++..+ ++.+++|++|+|++|++++..+ +..+++|+.|+|++|++++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 9999985 44 39999999999999999995543 9999999999999999985443 99999999999999999854
Q ss_pred CCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccC
Q 043900 164 IPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTG 211 (953)
Q Consensus 164 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 211 (953)
.+ +..+++|++|+|++|++++..+ + ..+++|+.|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l-~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--L-ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--G-TTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--c-cCCCCCCEEEccCCeeec
Confidence 33 8899999999999999996654 3 479999999999999984
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.3e-21 Score=215.89 Aligned_cols=203 Identities=15% Similarity=0.121 Sum_probs=161.2
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCC-cccCCccccce-eecc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIP-SELGSLSKIEH-LSVS 108 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~Ls 108 (953)
++++.++++++. +|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 678999999997 67666 3689999999999995555679999999999999999865554 56889988775 6677
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceeccc-ccccCCCCCcccccc-cceEEecCCccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAE-NWLSGTIPSSIFNIS-SITAFDAGMNQLQG 186 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~ 186 (953)
+|+|+...|++|.++++|++|++++|+|+...+..+....++..|++.+ |++....+..+..+. .++.|+|++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 8999977788999999999999999999877777788888888898865 677744455666664 6888999999998
Q ss_pred ccccccccccccccEEEeeC-ccccCCCCCCCcCCCCCcEEEcccccccCcCC
Q 043900 187 VIPLDFGFTLQNLQFFSVFE-NQLTGAIPPAISNASNLELFQADVNKLTGEVP 238 (953)
Q Consensus 187 ~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (953)
.+|...+ ...+|+.|++.+ |.++...+++|.++++|++|++++|+|+..++
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 5555555 456788888874 67775555678888888888888888876544
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.2e-23 Score=229.45 Aligned_cols=254 Identities=17% Similarity=0.206 Sum_probs=188.0
Q ss_pred CCcEEeCCCCccccccCcCccCC--CCCcEEeccCccccccCCcccCCccccceeeccccccccc-cCCcccCCCcccEE
Q 043900 53 RLQVLALNNNSIGGEIPANISSC--SNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGS-IPSSLGNLSSINTL 129 (953)
Q Consensus 53 ~L~~L~L~~n~i~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L 129 (953)
.++.||+++|.+. |..+..+ .+++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999999886 4567777 8999999999999866554 66899999999999998865 77788999999999
Q ss_pred ecccccccccCCccccccccccceecccc-cccCC-CCCcccccccceEEecCCc-ccccc-cccccccccc-cccEEEe
Q 043900 130 FLTDNNLDGGIPDTFGWLKNLATLAMAEN-WLSGT-IPSSIFNISSITAFDAGMN-QLQGV-IPLDFGFTLQ-NLQFFSV 204 (953)
Q Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~~l~-~L~~L~L 204 (953)
+|++|.+++..+..|+.+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+ ..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH-HhcccCCCEEEe
Confidence 99999998788888999999999999999 67642 5666788999999999999 88864 34333 4788 9999999
Q ss_pred eCcc--cc-CCCCCCCcCCCCCcEEEccccc-ccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEe
Q 043900 205 FENQ--LT-GAIPPAISNASNLELFQADVNK-LTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLL 280 (953)
Q Consensus 205 ~~N~--l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~ 280 (953)
++|. ++ +.++..+..+++|+.|++++|. +++..
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~------------------------------------------- 239 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC------------------------------------------- 239 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-------------------------------------------
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-------------------------------------------
Confidence 9994 54 3456677889999999999888 44221
Q ss_pred ccCCcccccCChhhhhccccCcEEEcccCc-ccccCCccccCCCCCCEEEeecCcccccCCcCccCC-CCCCeEEecccc
Q 043900 281 INANNFGGLLPACISNLSTTLEMLLLDNNK-IFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGEL-QNLRELRLQRNK 358 (953)
Q Consensus 281 l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~L~~N~ 358 (953)
+..+..+ ++|+.|++++|. +.......+.++++|+.|++++| ++ ...+..+ .+|..|++++|+
T Consensus 240 ----------~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 240 ----------FQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp ----------GGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCC
T ss_pred ----------HHHHhCC-CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEeccc
Confidence 1122222 456666666663 22222224667778888888877 32 2334444 236677777788
Q ss_pred ccCCCCCCCCC
Q 043900 359 FLGNIPPSIGN 369 (953)
Q Consensus 359 l~~~~p~~~~~ 369 (953)
+++..|..+++
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 77766666554
No 348
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.4e-24 Score=241.92 Aligned_cols=263 Identities=17% Similarity=0.226 Sum_probs=181.4
Q ss_pred ecCccccCCccCceeecCCCccCcCCC----ccCCCCCCCcEEeCCCC---ccccccCcCc-------cCCCCCcEEecc
Q 043900 19 SISPHVGNLSFLKVLLLYNNSFNHGIP----SEFDRLQRLQVLALNNN---SIGGEIPANI-------SSCSNLIQIRLF 84 (953)
Q Consensus 19 ~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n---~i~~~~p~~~-------~~l~~L~~L~L~ 84 (953)
.++..+..+++|++|+|++|+|+...+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 567777788888888888888887533 44778888888888885 4444555544 678888888888
Q ss_pred Cccccc----cCCcccCCccccceeeccccccccccCCcc----cCC---------CcccEEeccccccc-ccCC---cc
Q 043900 85 YNELVG----KIPSELGSLSKIEHLSVSVNNLTGSIPSSL----GNL---------SSINTLFLTDNNLD-GGIP---DT 143 (953)
Q Consensus 85 ~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~L---------~~L~~L~L~~N~l~-~~~~---~~ 143 (953)
+|.+++ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|+|++|+++ ...+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888875 466777888888888888888865444333 333 78888888888886 3344 46
Q ss_pred ccccccccceecccccccC-----CCCCcccccccceEEecCCcccc----cccccccccccccccEEEeeCccccCC--
Q 043900 144 FGWLKNLATLAMAENWLSG-----TIPSSIFNISSITAFDAGMNQLQ----GVIPLDFGFTLQNLQFFSVFENQLTGA-- 212 (953)
Q Consensus 144 ~~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 212 (953)
|..+++|++|+|++|+|+. ..|..+..+++|+.|+|++|+++ ..+|..+. .+++|++|+|++|+|++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhH
Confidence 7778888888888888862 34447778888888888888885 45565544 677888888888887754
Q ss_pred --CCCCC--cCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccc-cccccccEEeccCCccc
Q 043900 213 --IPPAI--SNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSL-TNSTRLNRLLINANNFG 287 (953)
Q Consensus 213 --~~~~~--~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l-~~~~~L~~L~l~~n~~~ 287 (953)
++..+ +.+++|+.|++++|.++.. +.. .....+ .++++|++|++++|.+.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~-----------------------g~~--~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELD-----------------------AVR--TLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHH-----------------------HHH--HHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHH-----------------------HHH--HHHHHHHhcCCCceEEEccCCcCC
Confidence 34555 3377888888888877751 000 001112 34567778888888887
Q ss_pred ccCC--hhhhhccccCcEEEcc
Q 043900 288 GLLP--ACISNLSTTLEMLLLD 307 (953)
Q Consensus 288 ~~~p--~~~~~~~~~L~~L~L~ 307 (953)
+..+ ..+....+.++.+.+.
T Consensus 317 ~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 317 EEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp TTSHHHHHHHHHHHHHTCCEEC
T ss_pred cchhHHHHHHHHhhhcCcchhh
Confidence 7664 5555544555544443
No 349
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.2e-24 Score=237.94 Aligned_cols=235 Identities=15% Similarity=0.229 Sum_probs=195.3
Q ss_pred CcEEEEEeCCCeeeee----cCccccCCccCceeecCCCccC---cCCCccC-------CCCCCCcEEeCCCCcccc---
Q 043900 4 QRVKILNLTSLKLAGS----ISPHVGNLSFLKVLLLYNNSFN---HGIPSEF-------DRLQRLQVLALNNNSIGG--- 66 (953)
Q Consensus 4 ~~~~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~-------~~l~~L~~L~L~~n~i~~--- 66 (953)
..++.|+|++|++.+. ++..+..+++|++|+|++|.+. +.+|..+ ..+++|++|+|++|.|++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5689999999999865 4556889999999999997544 4455544 789999999999999997
Q ss_pred -ccCcCccCCCCCcEEeccCccccccCCcccC----Cc---------cccceeeccccccc-cccC---CcccCCCcccE
Q 043900 67 -EIPANISSCSNLIQIRLFYNELVGKIPSELG----SL---------SKIEHLSVSVNNLT-GSIP---SSLGNLSSINT 128 (953)
Q Consensus 67 -~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~L~~L~~ 128 (953)
.+|..+..+++|++|+|++|.++...+..+. .+ ++|++|+|++|+++ +.+| ..|..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4788899999999999999999755444444 44 89999999999997 3445 46788999999
Q ss_pred Eecccccccc-----cCCccccccccccceeccccccc----CCCCCcccccccceEEecCCcccccc----cccccc-c
Q 043900 129 LFLTDNNLDG-----GIPDTFGWLKNLATLAMAENWLS----GTIPSSIFNISSITAFDAGMNQLQGV----IPLDFG-F 194 (953)
Q Consensus 129 L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~----~~~~~~-~ 194 (953)
|+|++|+|+. ..+..+..+++|++|+|++|+++ ..+|..+..+++|+.|+|++|+|++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999972 34558899999999999999995 46788899999999999999999865 344442 1
Q ss_pred ccccccEEEeeCccccC----CCCCCC-cCCCCCcEEEcccccccCcCC
Q 043900 195 TLQNLQFFSVFENQLTG----AIPPAI-SNASNLELFQADVNKLTGEVP 238 (953)
Q Consensus 195 ~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~~ 238 (953)
.+++|++|+|++|++++ .+|..+ .++++|+.|++++|++++..+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 38999999999999997 477777 678999999999999997653
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.5e-21 Score=196.74 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=118.8
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
+.+++++++++. +|..+ .++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456666666665 44333 346677777777776554555666777777777777776555555666777777777777
Q ss_pred ccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccccccc
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPL 190 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 190 (953)
++++..+..|+++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 7765555556677777777777777765555566777777777777777765444456667777777777776653
Q ss_pred ccccccccccEEEeeCccccCCCCCCCcCCCC
Q 043900 191 DFGFTLQNLQFFSVFENQLTGAIPPAISNASN 222 (953)
Q Consensus 191 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 222 (953)
.+++|++|+++.|++++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4556777777777777777777665544
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=3e-21 Score=196.20 Aligned_cols=177 Identities=20% Similarity=0.203 Sum_probs=157.7
Q ss_pred EEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 7 KILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 7 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
+.++.+++++. .+|..+ .++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35677888776 777755 468999999999999977788999999999999999999666677899999999999999
Q ss_pred cccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9997777778999999999999999997777779999999999999999997777789999999999999998874
Q ss_pred cccccccceEEecCCcccccccccccc
Q 043900 167 SIFNISSITAFDAGMNQLQGVIPLDFG 193 (953)
Q Consensus 167 ~l~~l~~L~~L~L~~N~l~~~~~~~~~ 193 (953)
.+++|+.|+++.|+++|.+|..+.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCc
Confidence 456889999999999999998776
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=9.7e-21 Score=219.40 Aligned_cols=189 Identities=27% Similarity=0.332 Sum_probs=144.4
Q ss_pred cCcEEEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccC
Q 043900 300 TLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSC 379 (953)
Q Consensus 300 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~ 379 (953)
+++.|++++|++++ +|..+ +++|+.|+|++|.|+ .+| ..+++|++|+|++|+|++ +|. +.+ .+++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 68888888888886 55544 367888888888888 556 446888888888888886 666 555 778888888
Q ss_pred CcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccC
Q 043900 380 NFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEI 459 (953)
Q Consensus 380 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 459 (953)
|.|++ +|. .+++|+.|+|++|+|++ +|. ....++.|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 88886 555 57888889999998884 665 33456688888888886 666 65 88888888888888 66
Q ss_pred CCCccCCccc-------cEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCcccccccc
Q 043900 460 PSTLGSCKKL-------EQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQL 516 (953)
Q Consensus 460 p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 516 (953)
|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..++.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 66 554 66 88888888888 57777777888888888888888888887776654
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5.5e-21 Score=221.46 Aligned_cols=181 Identities=24% Similarity=0.354 Sum_probs=147.7
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
+|++|+|++|+|++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|+|++|.|++ +|. |++ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78999999999988 66655 378999999999998 777 457889999999999985 676 665 89999999
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVI 188 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 188 (953)
+|+|++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|+|++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999985 665 67889999999999985 555 57889999999999984 777 55 88999999999998 66
Q ss_pred ccccccccccc-------cEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCC
Q 043900 189 PLDFGFTLQNL-------QFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVP 238 (953)
Q Consensus 189 ~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (953)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++..|
T Consensus 196 p~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 196 PA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 66 442 66 99999999999 578888889999999999999987654
No 354
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=190.31 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=125.2
Q ss_pred eEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecC
Q 043900 373 FNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFE 452 (953)
Q Consensus 373 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 452 (953)
+.+++++|.++ .+|..+. ..++.|+|++|+|++..|..++.....++.|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555666655 3455443 34567777777777554555444455566788888888777777889999999999999
Q ss_pred CcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCC
Q 043900 453 NKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 453 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 532 (953)
|+|++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99997777789999999999999999998888999999999999999999998888899999999999999999988765
Q ss_pred C
Q 043900 533 I 533 (953)
Q Consensus 533 ~ 533 (953)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=6.2e-20 Score=187.71 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=119.2
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
+.+++++++++. +|..+. .+|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567788888876 555443 67888888888888666667888888888888888888777788888888888888888
Q ss_pred ccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccc
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQG 186 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 186 (953)
+|+...+..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8885555567788888888888888887777888888888888888888886666677788888888888888764
No 356
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=8.3e-20 Score=186.77 Aligned_cols=151 Identities=22% Similarity=0.282 Sum_probs=110.9
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE 87 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 87 (953)
.++++++++. .+|..+. ++|++|+|++|+|+++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4667777765 6676554 567777777777777666677777777777777777776667777777777777777777
Q ss_pred ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceeccccccc
Q 043900 88 LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (953)
|+...+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..++.|..+++|++|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77555555677777777777777777666777777777777777777777666667777777777777777775
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=187.34 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=126.6
Q ss_pred CceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccC-cCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIP-ANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
-+++++++|+++. +|..+. ..+++|+|++|+|++..| ..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3578888888887 565553 346788888888886544 457888888888888888887777788888888888888
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVI 188 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 188 (953)
+|++++..+..|+++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|.+....
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88888777777888888888888888888777888888888888888888888777888888888888888888887554
Q ss_pred c
Q 043900 189 P 189 (953)
Q Consensus 189 ~ 189 (953)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=4.8e-20 Score=204.24 Aligned_cols=175 Identities=19% Similarity=0.218 Sum_probs=123.7
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCcc-CCCCCcEEeccCccccccCCcccCCccccceeeccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANIS-SCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSV 109 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (953)
+.+++++++++. +|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 577777777776 555443 3477777777777766666666 777777777777777766666777777777777777
Q ss_pred cccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCc-c---cccccceEEecCCcccc
Q 043900 110 NNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSS-I---FNISSITAFDAGMNQLQ 185 (953)
Q Consensus 110 N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-l---~~l~~L~~L~L~~N~l~ 185 (953)
|+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|+. +|.. + ..+++|+.|||++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77776666677777777777777777777777777777777777777777773 4443 3 45777888888888877
Q ss_pred ccccccccccccc--ccEEEeeCcccc
Q 043900 186 GVIPLDFGFTLQN--LQFFSVFENQLT 210 (953)
Q Consensus 186 ~~~~~~~~~~l~~--L~~L~L~~N~l~ 210 (953)
.+|...+..++. |+.|+|++|.+.
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCcc
Confidence 344333335665 377888888776
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.8e-20 Score=198.16 Aligned_cols=148 Identities=21% Similarity=0.342 Sum_probs=69.1
Q ss_pred CCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccccee
Q 043900 26 NLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHL 105 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (953)
.+++|++|++++|.++.+ + .+..+++|++|+|++|++++. +. +.++++|++|+|++|.+++ +| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 444455555555555542 2 244455555555555555422 22 4455555555555555542 22 24455555555
Q ss_pred eccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccc
Q 043900 106 SVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 106 ~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
++++|++++ + ..+..+++|++|++++|++++. ..|..+++|++|+|++|++++..| +..+++|+.|++++|+++
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 555555542 2 2344455555555555555432 344444555555555554443222 444444444444444444
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.5e-20 Score=199.59 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=165.5
Q ss_pred CCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccccee
Q 043900 26 NLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHL 105 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (953)
.+..+..+.+..+.+++..+ +..+++|+.|++++|.++ .++ .+..+++|++|+|++|++++..+ +.++++|++|
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L 95 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWL 95 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEE
Confidence 34556677888888887433 568999999999999998 555 48999999999999999995444 9999999999
Q ss_pred eccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccc
Q 043900 106 SVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 106 ~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
++++|++++ +| .++.+++|++|+|++|++++. ..+..+++|++|+|++|++++. ..+..+++|+.|++++|+++
T Consensus 96 ~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 999999984 44 599999999999999999853 5799999999999999999854 57889999999999999999
Q ss_pred cccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcC
Q 043900 186 GVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEV 237 (953)
Q Consensus 186 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (953)
+..+ +..+++|+.|++++|+|++. + .+..+++|+.|++++|+++..+
T Consensus 170 ~~~~---l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 170 DIVP---LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCGG---GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred cchh---hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 7655 34789999999999999853 3 4889999999999999988643
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=8.5e-20 Score=202.25 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=106.9
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCC-CCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFD-RLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYN 86 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 86 (953)
.++++++++. .+|..+. ..+++|+|++|+|+++.+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4566666664 5665443 2456666666666665555565 6666666666666666555556666666666666666
Q ss_pred cccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccc---cccccccceecccccccCC
Q 043900 87 ELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTF---GWLKNLATLAMAENWLSGT 163 (953)
Q Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~ 163 (953)
+|++..+..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|+|+...+..| ..+++|+.|+|++|+|+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 6665555566666666666666666665556666666666666666666664444444 4566666666666666633
Q ss_pred CCCccccccc--ceEEecCCcccc
Q 043900 164 IPSSIFNISS--ITAFDAGMNQLQ 185 (953)
Q Consensus 164 ~p~~l~~l~~--L~~L~L~~N~l~ 185 (953)
.+..+..+++ ++.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 3344555554 356666666665
No 362
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=7.6e-20 Score=214.53 Aligned_cols=194 Identities=19% Similarity=0.282 Sum_probs=135.6
Q ss_pred CccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceee
Q 043900 27 LSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLS 106 (953)
Q Consensus 27 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (953)
+..+..+.|+++.++...+ +..+.+|+.|+|++|.|+ .+| .|..+++|+.|+|++|.|++..| +..+++|++|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 4445666677777766433 456677777777777776 444 46777777777777777774433 77777777777
Q ss_pred ccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccc
Q 043900 107 VSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQG 186 (953)
Q Consensus 107 Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 186 (953)
|++|+|++ +| .|+.+++|+.|+|++|+|++ + ..|..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 77777763 33 67777777777777777764 2 3477777777777777777743 456777777777777777776
Q ss_pred ccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcC
Q 043900 187 VIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEV 237 (953)
Q Consensus 187 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (953)
..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++.+
T Consensus 168 ~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 168 IVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred chh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 555 33677888888888888753 35778888888888888887654
No 363
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.8e-19 Score=183.18 Aligned_cols=156 Identities=22% Similarity=0.207 Sum_probs=118.4
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
.-+.+++++++++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+...+..|.++++|++|+|+
T Consensus 20 s~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 35677888888776 554443 778888888888887777778888888888888888875555667788888888888
Q ss_pred ccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCccccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVI 188 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 188 (953)
+|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+....
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88888666666778888888888888887 66777788888888888888887555566777888888888888877543
No 364
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=6.6e-19 Score=181.39 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=105.6
Q ss_pred EEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc
Q 043900 8 ILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE 87 (953)
Q Consensus 8 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 87 (953)
.++.+++++. .+|..+. ++|++|+|++|+|+++.|..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|+
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4666666664 6666553 667777777777777667777777777777777777764444556777777777777777
Q ss_pred ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccC
Q 043900 88 LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSG 162 (953)
Q Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (953)
|++..+..|..+++|++|+|++|+|+ .+|..+.++++|++|+|++|+|++..+..|..+++|++|+|++|.+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 77555556677777777777777777 666677777777777777777776555667777777777777777663
No 365
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.4e-19 Score=212.39 Aligned_cols=192 Identities=20% Similarity=0.338 Sum_probs=160.9
Q ss_pred eCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccc
Q 043900 11 LTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVG 90 (953)
Q Consensus 11 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~ 90 (953)
+....+.+.+ .+..|.+|++|+|++|.|+. +| .|..+++|+.|+|++|+|++..| +..+++|+.|+|++|.|++
T Consensus 28 l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 28 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp TTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 4444444222 35688999999999999997 44 59999999999999999995544 9999999999999999984
Q ss_pred cCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccc
Q 043900 91 KIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFN 170 (953)
Q Consensus 91 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 170 (953)
+| .|..+++|++|+|++|+|++ + ..+..|++|+.|+|++|+|++. ..|..+++|+.|+|++|+|++..| +..
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 44 79999999999999999985 4 3699999999999999999855 679999999999999999996656 899
Q ss_pred cccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcC
Q 043900 171 ISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISN 219 (953)
Q Consensus 171 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 219 (953)
+++|+.|+|++|+|++. + .+ ..+++|+.|+|++|++.+.....+..
T Consensus 174 l~~L~~L~Ls~N~i~~l-~-~l-~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL-R-AL-AGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp CTTCCEEECCSSCCCBC-G-GG-TTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred CCCCCEEECcCCCCCCC-h-HH-ccCCCCCEEEccCCcCcCCccccccc
Confidence 99999999999999964 3 33 47999999999999998654444443
No 366
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2e-19 Score=180.72 Aligned_cols=153 Identities=14% Similarity=0.250 Sum_probs=84.6
Q ss_pred CCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccE
Q 043900 49 DRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINT 128 (953)
Q Consensus 49 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~ 128 (953)
..+++|++|++++|.|+ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..|+.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555555555555555 444 4555555555555555443 2234555566666666666665545555666666666
Q ss_pred EecccccccccCCccccccccccceeccccc-ccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCc
Q 043900 129 LFLTDNNLDGGIPDTFGWLKNLATLAMAENW-LSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFEN 207 (953)
Q Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N 207 (953)
|+|++|++++..+..|+.+++|++|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+ ..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l-~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GI-EDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TG-GGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hh-ccCCCCCEEEeeCc
Confidence 6666666655555556666666666666665 44 333 45556666666666666653 22 22 25666666666666
Q ss_pred ccc
Q 043900 208 QLT 210 (953)
Q Consensus 208 ~l~ 210 (953)
+|.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 665
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.7e-21 Score=225.65 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=137.4
Q ss_pred cCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCc-------------cccccCcCccCCCCCcEEe-ccCccccc
Q 043900 25 GNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNS-------------IGGEIPANISSCSNLIQIR-LFYNELVG 90 (953)
Q Consensus 25 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~p~~~~~l~~L~~L~-L~~n~l~~ 90 (953)
..+++|+.|+|++|+++. +|..++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 344555555555555553 55555555555555555543 2233334444444444444 333322
Q ss_pred cCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccc
Q 043900 91 KIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFN 170 (953)
Q Consensus 91 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 170 (953)
.+|+.+.+++|.++...+ ..|+.|+|++|+|++ +|. |+.+++|+.|+|++|+|+ .+|..+.+
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 133344445555553222 258999999999985 676 999999999999999999 88999999
Q ss_pred cccceEEecCCcccccccccccccccccccEEEeeCccccCCC-CCCCcCCCCCcEEEcccccccCcCCCC
Q 043900 171 ISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAI-PPAISNASNLELFQADVNKLTGEVPYL 240 (953)
Q Consensus 171 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~l 240 (953)
+++|+.|+|++|+|++ +| .+. .+++|+.|+|++|+|++.. |..++.+++|+.|++++|++++.++..
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999996 66 544 7999999999999999876 999999999999999999999887754
No 368
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.76 E-value=6.8e-19 Score=184.71 Aligned_cols=137 Identities=22% Similarity=0.195 Sum_probs=105.8
Q ss_pred CcccCcccccceeeEEEEEEcCCCeE--EEEEEeeccchh------------------------hHHHHHHHHHHHhhcC
Q 043900 633 FASANEIGVGSFGSVYKGILDQGKTT--VAVKVFNLLHHG------------------------AFKSFIAECNTLKNIR 686 (953)
Q Consensus 633 ~~~~~~ig~G~~g~Vy~~~~~~~~~~--vavK~~~~~~~~------------------------~~~~~~~e~~~l~~l~ 686 (953)
|++.+.||+|+||.||+|.+..+++. ||||+++..... ....+.+|+.+++++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999656668 999997532111 1236789999999998
Q ss_pred CCCe--eEEEeeecccccCCCCceeEEEeeccC-C----chhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHH
Q 043900 687 HRNL--VKILTACSGVDYQGNDFKALVFEFMQN-R----SLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYL 759 (953)
Q Consensus 687 h~ni--v~~~~~~~~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~L 759 (953)
|+++ ..++++ ...++||||+.+ | +|.++.. ..++.++..++.|++.||.||
T Consensus 129 ~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~-------------~~~~~~~~~i~~qi~~~l~~l 186 (258)
T 1zth_A 129 EAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGR-------------ELKELDVEGIFNDVVENVKRL 186 (258)
T ss_dssp HTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGG-------------GGGGSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhh-------------ccChHHHHHHHHHHHHHHHHH
Confidence 7753 444433 356899999942 4 5555432 122445778999999999999
Q ss_pred h-hCCCCCeEeecCCCCCeEecCCCcEEEeccccceec
Q 043900 760 H-HDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFL 796 (953)
Q Consensus 760 H-~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 796 (953)
| +. ||+||||||+|||++. .++|+|||+|...
T Consensus 187 H~~~---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 187 YQEA---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp HHTS---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred HHHC---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 9 88 9999999999999998 8999999999864
No 369
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.4e-18 Score=173.50 Aligned_cols=156 Identities=22% Similarity=0.285 Sum_probs=102.1
Q ss_pred cEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCc-cccCCCccceeeecCCcccccCCCCccCCccccEEEcc
Q 043900 397 TIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPS-EVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQ 475 (953)
Q Consensus 397 ~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 475 (953)
+.+++++|+++ .+|..+.. .++.|++++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45566666664 55554432 345666666666654443 36777777777777777777667777777777777777
Q ss_pred CccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCCCCCcccccccccccCCcCCCCCC
Q 043900 476 GNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVPIEGVFKNATITSVLGNLKLCGGI 555 (953)
Q Consensus 476 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~ 555 (953)
+|+|++..|..|..+++|++|+|++|+|++..|..+..+++|+.|+|++|+|++..+.......+....+.++...|+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 77777777777777777777777777777777777777777777777777777766543222222223344555556544
Q ss_pred C
Q 043900 556 P 556 (953)
Q Consensus 556 ~ 556 (953)
.
T Consensus 167 ~ 167 (192)
T 1w8a_A 167 S 167 (192)
T ss_dssp T
T ss_pred h
Confidence 4
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=4e-19 Score=187.04 Aligned_cols=170 Identities=23% Similarity=0.293 Sum_probs=122.4
Q ss_pred CCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccccee
Q 043900 26 NLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHL 105 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (953)
.+.++..+++++|.++++. .+..+++|++|++++|.|+ .+| .+..+++|++|+|++|+|++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 5677788888888888733 5788888888888888887 556 68888888888888888884433 8888888888
Q ss_pred eccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccc
Q 043900 106 SVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 106 ~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
+|++|++++ +|. +.. ++|++|+|++|+|++. ..|..+++|++|+|++|+|++ +| .+..+++|+.|+|++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence 888888874 443 333 7888888888888743 357778888888888888873 33 5666777777777777776
Q ss_pred cccccccccccccccEEEeeCccccC
Q 043900 186 GVIPLDFGFTLQNLQFFSVFENQLTG 211 (953)
Q Consensus 186 ~~~~~~~~~~l~~L~~L~L~~N~l~~ 211 (953)
+. .. +..+++|+.|++++|++++
T Consensus 164 ~~--~~-l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GG-LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TT-STTCCCCCEEEEEEEEEEC
T ss_pred ch--HH-hccCCCCCEEeCCCCcccC
Confidence 43 22 2255566666666666553
No 371
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.2e-19 Score=218.54 Aligned_cols=142 Identities=29% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCC
Q 043900 44 IPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNL 123 (953)
Q Consensus 44 ~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L 123 (953)
.|..|..+.+|+.|+|++|.|. .+|..+.++++|++|+|++|.|+ .+|..|++|++|++|+|++|+|+ .+|..|++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3445555555555555555555 45544555555555555555555 45555555555555555555555 445555555
Q ss_pred CcccEEecccccccccCCccccccccccceecccccccCCCCCccccccc-ceEEecCCcccccccc
Q 043900 124 SSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISS-ITAFDAGMNQLQGVIP 189 (953)
Q Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~ 189 (953)
++|++|+|++|.|+ .+|..|+.|++|++|+|++|+|++.+|..+..+.. +..|+|++|.+++.+|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 55555555555554 44444555555555555555555444444433321 1234455555554444
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.5e-18 Score=174.43 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=137.0
Q ss_pred cccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 23 HVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 23 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
....+++|++|++++|+++. +| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..|+.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34778899999999999996 56 6999999999999999875 34589999999999999999998889999999999
Q ss_pred ceeeccccccccccCCcccCCCcccEEeccccc-ccccCCccccccccccceecccccccCCCCCcccccccceEEecCC
Q 043900 103 EHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNN-LDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGM 181 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 181 (953)
++|++++|++++..|..|+.+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 999999999998788899999999999999998 76 555 69999999999999999984 55 788999999999999
Q ss_pred ccccc
Q 043900 182 NQLQG 186 (953)
Q Consensus 182 N~l~~ 186 (953)
|+|.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 99873
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5.9e-19 Score=185.80 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=145.7
Q ss_pred EEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccC
Q 043900 6 VKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFY 85 (953)
Q Consensus 6 ~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 85 (953)
++.++++.+.+. .++ .+..+++|++|++++|+|+. +| .+..+++|++|+|++|+|++ +|. +.++++|++|+|++
T Consensus 21 l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 345667777776 444 68899999999999999997 55 79999999999999999995 444 99999999999999
Q ss_pred ccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCC
Q 043900 86 NELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIP 165 (953)
Q Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 165 (953)
|++++ +|.. .. ++|++|+|++|++++ ++ .++++++|++|+|++|+|++. + .+..+++|++|+|++|++++.
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 99985 4443 33 999999999999995 44 699999999999999999854 4 799999999999999999955
Q ss_pred CcccccccceEEecCCccccccccccc
Q 043900 166 SSIFNISSITAFDAGMNQLQGVIPLDF 192 (953)
Q Consensus 166 ~~l~~l~~L~~L~L~~N~l~~~~~~~~ 192 (953)
..+..+++|+.|++++|.+++. |..+
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~-~~~~ 191 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE-PVKY 191 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC-CEEC
T ss_pred HHhccCCCCCEEeCCCCcccCC-cccc
Confidence 7789999999999999999854 5443
No 374
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=4.7e-20 Score=215.12 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=117.8
Q ss_pred CCccccceeeccccccccccCCcccCCCcccEEeccccc-------------ccccCCcccccccccccee-cccccccC
Q 043900 97 GSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNN-------------LDGGIPDTFGWLKNLATLA-MAENWLSG 162 (953)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~~ 162 (953)
..+++|+.|+|++|+++ .+|..+++|++|+.|++++|. +.+..|+.++.+++|+.|+ ++.|++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45556666666666665 556666666666666665553 3446666777777777777 6666543
Q ss_pred CCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCC
Q 043900 163 TIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEK 242 (953)
Q Consensus 163 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~ 242 (953)
+|+.+.+++|.++...+ ..|+.|+|++|+|++ +|. ++.+++|+.|+|++|.++.
T Consensus 424 ----------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~------- 477 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA------- 477 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-------
T ss_pred ----------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-------
Confidence 44555666666663211 246667777777764 444 6666666666666666652
Q ss_pred CCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCC
Q 043900 243 PQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKF 322 (953)
Q Consensus 243 ~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l 322 (953)
+|..+..+ ++|+.|+|++|+|++ +| .|+.+
T Consensus 478 -----------------------------------------------lp~~~~~l-~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 478 -----------------------------------------------LPPALAAL-RCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp -----------------------------------------------CCGGGGGC-TTCCEEECCSSCCCC-CG-GGTTC
T ss_pred -----------------------------------------------cchhhhcC-CCCCEEECCCCCCCC-Cc-ccCCC
Confidence 33344444 467777777777765 44 67777
Q ss_pred CCCCEEEeecCcccccC-CcCccCCCCCCeEEeccccccC
Q 043900 323 VNLQRLEMWNNRLSGTI-PPAIGELQNLRELRLQRNKFLG 361 (953)
Q Consensus 323 ~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~ 361 (953)
++|+.|+|++|.|++.. |..|+.+++|+.|+|++|++++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 77777777777777655 7777777777777777777764
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=4.9e-18 Score=185.62 Aligned_cols=305 Identities=9% Similarity=0.030 Sum_probs=177.5
Q ss_pred EEEEEeCCCeeeeecCccccC--CccCceeecCCCccCcCCCccCCC-CCCCcEEeCCCCccc--cccCcCccCCCCCcE
Q 043900 6 VKILNLTSLKLAGSISPHVGN--LSFLKVLLLYNNSFNHGIPSEFDR-LQRLQVLALNNNSIG--GEIPANISSCSNLIQ 80 (953)
Q Consensus 6 ~~~l~l~~~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~p~~~~~l~~L~~ 80 (953)
++.+++.. .|+++..+.. +.+++.|.++++ +....-..+.. +++|++|||++|+|. ...+..+ +.++.
T Consensus 4 ~~~~~~~~---~g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~ 76 (329)
T 3sb4_A 4 SKTYYVSK---PGTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKF 76 (329)
T ss_dssp EEEEEESS---TTCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCC
T ss_pred ceeEecCC---CCcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccc
Confidence 44455432 3445555554 677888888864 22111112223 677888888888887 2222222 22455
Q ss_pred EeccCccccccCCcccCC--------ccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccc
Q 043900 81 IRLFYNELVGKIPSELGS--------LSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLAT 152 (953)
Q Consensus 81 L~L~~n~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (953)
+.+..|.| .+..|.+ +++|+.|+|.+ +++.+.+.+|.++++|+.|++++|.+..+.+.+|.++.++..
T Consensus 77 ~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~ 152 (329)
T 3sb4_A 77 YIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF 152 (329)
T ss_dssp EEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE
T ss_pred cccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE
Confidence 55555533 3345556 77777777777 666555566777777777777777776666667777666666
Q ss_pred eecccccc----cCCCCCcccccccce-EEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEE
Q 043900 153 LAMAENWL----SGTIPSSIFNISSIT-AFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQ 227 (953)
Q Consensus 153 L~L~~N~l----~~~~p~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 227 (953)
+.+..+.. ....+.+|.++.+|+ .+++.... .++..++. ......++..+.
T Consensus 153 l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~---------------------~~~~~~~~~~l~ 208 (329)
T 3sb4_A 153 IPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMK---------------------AGLQPRDINFLT 208 (329)
T ss_dssp ECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHH---------------------TTCCGGGCSEEE
T ss_pred ecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhh---------------------cccCccccceEE
Confidence 66555322 111223333444433 22221110 01110000 000111112222
Q ss_pred cccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcc
Q 043900 228 ADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLD 307 (953)
Q Consensus 228 L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~ 307 (953)
+. ++ +.......+....++|+.++|+
T Consensus 209 ~~-----------------------------------------------------~~-l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 209 IE-----------------------------------------------------GK-LDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp EE-----------------------------------------------------EC-CCHHHHHHHHHHCTTCCEEECT
T ss_pred Ee-----------------------------------------------------ee-ecHHHHHHHHHhcCCCeEEECC
Confidence 11 11 0000111122223578888888
Q ss_pred cCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCC-eEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCC
Q 043900 308 NNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLR-ELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGS 385 (953)
Q Consensus 308 ~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~ 385 (953)
+|+++.+.+.+|.++++|+.|+|.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++ .++.+++++|.++.+
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 88888788888999999999999888 7778888899999998 898887 6776666777776 467777777777777
Q ss_pred CCccCCCCCCCcEEEc
Q 043900 386 IPSSLGQYKTLTIIDL 401 (953)
Q Consensus 386 ~p~~~~~l~~L~~L~L 401 (953)
.+.+|.++++|+.++.
T Consensus 313 ~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 313 GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTCTTCCCCEEEC
T ss_pred chhhhcCCcchhhhcc
Confidence 7778888888887763
No 376
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.1e-18 Score=210.38 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=107.8
Q ss_pred ccCceeecCCCccCcCCCccCCCCCCCc-----EEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 28 SFLKVLLLYNNSFNHGIPSEFDRLQRLQ-----VLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 28 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
+.++.|+|++|.+.. .+..+....+|. .++++.|.+. ..|+.|..+.+|+.|+|++|.+. .+|..++++++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 457778888888876 344333222222 2344445555 66778888888888888888888 777777788888
Q ss_pred ceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCc
Q 043900 103 EHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMN 182 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 182 (953)
++|+|++|+|+ .+|..|++|++|++|+|++|+|+ .+|..|+.|++|++|+|++|.|+ .+|..|.++++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888888 78888888888888888888888 67888888888888888888887 77888888888888888888
Q ss_pred ccccccccccccccccccEEEeeCccccCCCCC
Q 043900 183 QLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPP 215 (953)
Q Consensus 183 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 215 (953)
.|++.+|..+......+..|+|++|.+++.+|.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 888777766642112222345555655554443
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.9e-17 Score=163.96 Aligned_cols=177 Identities=23% Similarity=0.262 Sum_probs=130.4
Q ss_pred eEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecC
Q 043900 373 FNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFE 452 (953)
Q Consensus 373 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 452 (953)
+++++++|.++ .+|..+.. +|+.|+|++|+|++..+..++.....++.|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45566666664 45555443 7888888888887554444444555667888888888888899999999999999999
Q ss_pred CcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCC
Q 043900 453 NKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 453 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 532 (953)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+-.. -...++...+..+...+..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999999999997654321 11123333455555555555
Q ss_pred CCCcccccccccccCCcCCCCCC
Q 043900 533 IEGVFKNATITSVLGNLKLCGGI 555 (953)
Q Consensus 533 ~~~~~~~~~~~~~~~n~~lcg~~ 555 (953)
.. +.......+..+..-|.+.
T Consensus 167 ~~--l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 167 SK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp TT--TTTSBGGGSCTTTCCCCCC
T ss_pred hH--HcCCChhhCcHhhcCcCCC
Confidence 43 4455555666665556543
No 378
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.8e-17 Score=161.16 Aligned_cols=131 Identities=24% Similarity=0.315 Sum_probs=110.0
Q ss_pred cEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccC
Q 043900 397 TIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQG 476 (953)
Q Consensus 397 ~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 476 (953)
+.+++++|+++ .+|..+. ..++.|++++|+|+ .+|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46777777777 6665543 35667888888887 6778889999999999999999987788899999999999999
Q ss_pred ccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCC
Q 043900 477 NFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 477 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 532 (953)
|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++.+...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 99998888889999999999999999997666678889999999999999986543
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=3.4e-17 Score=159.92 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=91.0
Q ss_pred CccCceeecCCCccC-cCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccccee
Q 043900 27 LSFLKVLLLYNNSFN-HGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHL 105 (953)
Q Consensus 27 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (953)
.++|++|+|++|+++ +.+|..|..+++|++|+|++|.|++. ..|..+++|++|+|++|.+++.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456777777777776 34666677777777777777777643 666777777777777777765566666667777777
Q ss_pred ecccccccccc-CCcccCCCcccEEecccccccccCC---ccccccccccceecccccccCCCCC
Q 043900 106 SVSVNNLTGSI-PSSLGNLSSINTLFLTDNNLDGGIP---DTFGWLKNLATLAMAENWLSGTIPS 166 (953)
Q Consensus 106 ~Ls~N~l~~~~-p~~~~~L~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~ 166 (953)
+|++|++++.. +..++.+++|++|++++|.+++..+ ..|..+++|++|++++|.+. .+|+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 77777776432 1566677777777777777764443 36666777777777777665 4443
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=158.65 Aligned_cols=127 Identities=23% Similarity=0.293 Sum_probs=87.5
Q ss_pred ceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecccc
Q 043900 31 KVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVN 110 (953)
Q Consensus 31 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 110 (953)
+++++++|+++. +|..+. .+|++|+|++|+|+ .+|..|.++++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567777777776 554442 46777777777777 66677777777777777777777666666777777777777777
Q ss_pred ccccccCCcccCCCcccEEecccccccccCCccccccccccceeccccccc
Q 043900 111 NLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 111 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (953)
+|++..|.+|.++++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777776555555666666666666666654
No 381
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.7e-17 Score=175.70 Aligned_cols=282 Identities=13% Similarity=0.037 Sum_probs=191.1
Q ss_pred cEEEEEeCCCeeeeecCccccC-CccCceeecCCCccC--cCCCccCCCCCCCcEEeCCCCccccccCcCccC-------
Q 043900 5 RVKILNLTSLKLAGSISPHVGN-LSFLKVLLLYNNSFN--HGIPSEFDRLQRLQVLALNNNSIGGEIPANISS------- 74 (953)
Q Consensus 5 ~~~~l~l~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~------- 74 (953)
+++.|++++. +...--..+.. +++|++|||++|+|+ ...+..+ ..+..+.+..|.| .+.+|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccccc
Confidence 3556666542 11111123333 778999999999999 4333333 3356666666643 3566777
Q ss_pred -CCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccc----cccCCcccccccc
Q 043900 75 -CSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNL----DGGIPDTFGWLKN 149 (953)
Q Consensus 75 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l----~~~~~~~~~~l~~ 149 (953)
+++|+.|+|.+ .++.+.+.+|.+|++|+.|++++|.+....+.+|.++.++..+.+..+.. .......|.++.+
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 99999999999 88877788899999999999999999878888999988888888877432 3345566777887
Q ss_pred cc-ceecccccccCCCCCcc----cccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCc
Q 043900 150 LA-TLAMAENWLSGTIPSSI----FNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLE 224 (953)
Q Consensus 150 L~-~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 224 (953)
|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+...+++|+.++|++|+++.+...+|.++.+|+
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 77 44443321 122221 13455666666554322 22222333477888888888888877777888888888
Q ss_pred EEEcccccccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCc-E
Q 043900 225 LFQADVNKLTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLE-M 303 (953)
Q Consensus 225 ~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~-~ 303 (953)
.+++..| ++.+.+ .+|..+ .+|+ .
T Consensus 254 ~l~l~~n-i~~I~~-----------------------------------------------------~aF~~~-~~L~~~ 278 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQ-----------------------------------------------------RVFSNC-GRLAGT 278 (329)
T ss_dssp EEECCTT-CCEECT-----------------------------------------------------TTTTTC-TTCCEE
T ss_pred EEECCcc-cceehH-----------------------------------------------------HHhhCC-hhccEE
Confidence 8888776 443221 223333 4577 7
Q ss_pred EEcccCcccccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEe
Q 043900 304 LLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRL 354 (953)
Q Consensus 304 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 354 (953)
+++.+ +++.+.+.+|.++++|+.|++++|.++.+.+.+|.++++|+.++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77777 666677788888888888888888888777888888888888763
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=6.5e-17 Score=157.87 Aligned_cols=137 Identities=24% Similarity=0.212 Sum_probs=122.7
Q ss_pred CcEEEEEeCCCeee-eecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEe
Q 043900 4 QRVKILNLTSLKLA-GSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIR 82 (953)
Q Consensus 4 ~~~~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 82 (953)
.+++.|+|++|++. +.+|..+..+++|++|+|++|.+++. ..|..+++|++|+|++|.+++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56899999999997 79999999999999999999999985 7899999999999999999977888888899999999
Q ss_pred ccCccccccC-CcccCCccccceeeccccccccccC---CcccCCCcccEEecccccccccCCcc
Q 043900 83 LFYNELVGKI-PSELGSLSKIEHLSVSVNNLTGSIP---SSLGNLSSINTLFLTDNNLDGGIPDT 143 (953)
Q Consensus 83 L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~L~~L~~L~L~~N~l~~~~~~~ 143 (953)
|++|.+++.. +..+..+++|++|++++|++++..+ ..|..+++|++|++++|.+. ..|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999998532 2789999999999999999995444 38999999999999999997 45543
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=7.8e-17 Score=153.82 Aligned_cols=129 Identities=22% Similarity=0.223 Sum_probs=97.2
Q ss_pred CCccCceeecCCCccC-cCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccce
Q 043900 26 NLSFLKVLLLYNNSFN-HGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEH 104 (953)
Q Consensus 26 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (953)
..++|++|++++|+++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|+|++|.+++.+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888887 55777788888888888888888744 67778888888888888887667777777788888
Q ss_pred eeccccccccc-cCCcccCCCcccEEecccccccccCC---ccccccccccceecc
Q 043900 105 LSVSVNNLTGS-IPSSLGNLSSINTLFLTDNNLDGGIP---DTFGWLKNLATLAMA 156 (953)
Q Consensus 105 L~Ls~N~l~~~-~p~~~~~L~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~ 156 (953)
|++++|++++. .+..++++++|++|++++|.+++..+ ..|..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888887753 23677778888888888888775544 467777777777765
No 384
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.3e-16 Score=151.78 Aligned_cols=133 Identities=22% Similarity=0.225 Sum_probs=108.1
Q ss_pred CcEEEcCCCccCCCCCccccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEcc
Q 043900 396 LTIIDLSDNNLTGTIPPQFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQ 475 (953)
Q Consensus 396 L~~L~L~~N~l~~~~p~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 475 (953)
.+.+++++|+++ .+|..+. ..++.|++++|++++..+..|..+++|++|+|++|+|++..+..|+.+++|++|+|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356677777776 5554433 345677888888876666778889999999999999987667778899999999999
Q ss_pred CccccCCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCcccCC
Q 043900 476 GNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 476 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 532 (953)
+|+|++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998777778899999999999999997666667889999999999999988766
No 385
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=5.9e-15 Score=164.41 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=91.0
Q ss_pred ccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeec
Q 043900 28 SFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSV 107 (953)
Q Consensus 28 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (953)
..++.+.+-+ .++.+...+|.++ +|+.++|..| ++.+...+|.+. +|+.+.+.. .++.+.+.+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4455555543 3555555566553 5666666555 554444555553 466666654 444445555666666666666
Q ss_pred cccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCCcccccc
Q 043900 108 SVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGV 187 (953)
Q Consensus 108 s~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 187 (953)
++|+++.....+|. .++|+.+.|.++ ++.+...+|.++++|+.+.|..| ++ .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------------------~ 239 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------------------T 239 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------------------E
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------------------C
Confidence 66666544444444 356666666533 44455555666666665555543 33 2
Q ss_pred cccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEccccccc
Q 043900 188 IPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLT 234 (953)
Q Consensus 188 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (953)
++...|.+ .+|+.+.+ .+.++.+...+|.++++|+.+.+..|.+.
T Consensus 240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 22222222 44555555 23344455566666666666666655543
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=7.9e-16 Score=151.55 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=78.3
Q ss_pred CceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccc
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSV 109 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (953)
.+.+++++|+++. +|..+ .++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|+++++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4566677777665 44333 25666777777766644445556666666666666666654445556666666666666
Q ss_pred cccccccCCcccCCCcccEEecccccccccCCccccccccccceeccccccc
Q 043900 110 NNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 110 N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (953)
|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6666555555566666666666666666444444555666666666666555
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.2e-16 Score=152.43 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=116.9
Q ss_pred cCcEEEEEeCCCeee-eecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEE
Q 043900 3 HQRVKILNLTSLKLA-GSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQI 81 (953)
Q Consensus 3 ~~~~~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 81 (953)
..+++.|++++|++. +.+|..+..+++|++|+|++|++++. ..|..+++|++|+|++|.|++.+|..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356899999999998 79999999999999999999999985 789999999999999999997788888899999999
Q ss_pred eccCcccccc-CCcccCCccccceeeccccccccccC---CcccCCCcccEEeccc
Q 043900 82 RLFYNELVGK-IPSELGSLSKIEHLSVSVNNLTGSIP---SSLGNLSSINTLFLTD 133 (953)
Q Consensus 82 ~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~L~~L~~L~L~~ 133 (953)
++++|.+++. .+..++.+++|++|++++|++++..+ ..++.+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 34889999999999999999996554 4789999999999874
No 388
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.5e-14 Score=161.12 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=169.7
Q ss_pred cCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccc
Q 043900 73 SSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLAT 152 (953)
Q Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (953)
..+..++.+.+.. .++.+...+|.++ +|+.+.+..| ++.+...+|.+ .+|+.+.+.+ .++.+.+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3456777777754 4554666777775 6888888766 66566677877 4788888875 666677788888888888
Q ss_pred eecccccccCCCCCcccccccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEccccc
Q 043900 153 LAMAENWLSGTIPSSIFNISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNK 232 (953)
Q Consensus 153 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (953)
++|.+|+++ .+|...+.+.+|+.+.|..+ ++ .++...|.++++|+.+.+.+| ++.+...+|.+ .+|+.+.+. |.
T Consensus 185 l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCS-EECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcce-EechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 888888888 55555555788999998854 66 566666668999999999875 66577788887 788888884 33
Q ss_pred ccCcCCCCCCCCccceeeecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCccc
Q 043900 233 LTGEVPYLEKPQRLSVFSITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIF 312 (953)
Q Consensus 233 l~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~ 312 (953)
++.+.+. +|..+ ++|+.+.+.+|.+.
T Consensus 259 i~~I~~~-----------------------------------------------------aF~~c-~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 259 VTNIASR-----------------------------------------------------AFYYC-PELAEVTTYGSTFN 284 (401)
T ss_dssp CCEECTT-----------------------------------------------------TTTTC-TTCCEEEEESSCCC
T ss_pred ccEEChh-----------------------------------------------------HhhCC-CCCCEEEeCCcccc
Confidence 4332211 11122 24444444444432
Q ss_pred -----ccCCccccCCCCCCEEEeecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCC
Q 043900 313 -----GNIPAAIGKFVNLQRLEMWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIP 387 (953)
Q Consensus 313 -----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p 387 (953)
.+.+.+|.++++|+.++|. +.++.+...+|.++++|+.+.|..| ++.+-+.+|.++.++.+++++|.+....+
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCC
T ss_pred CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCccccc
Confidence 3455666777777777776 3466566667777777777777443 44333344444444444444444444444
Q ss_pred ccCCCCC-CCcEEEcCCCcc
Q 043900 388 SSLGQYK-TLTIIDLSDNNL 406 (953)
Q Consensus 388 ~~~~~l~-~L~~L~L~~N~l 406 (953)
..|.+++ +++.|++..+.+
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGH
T ss_pred ccccCCCCCccEEEeCHHHH
Confidence 4455543 455555555443
No 389
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=3.2e-14 Score=159.41 Aligned_cols=137 Identities=6% Similarity=-0.019 Sum_probs=82.9
Q ss_pred ccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCC
Q 043900 39 SFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPS 118 (953)
Q Consensus 39 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 118 (953)
.++.+...+|.++.+|+.+.|..+ ++.+...+|.++++|+.++|..+ ++.+....|.++.+|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 456666677888888888888644 66566677888888888888655 55455667777777777777654 3335556
Q ss_pred cccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEEecCC
Q 043900 119 SLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAFDAGM 181 (953)
Q Consensus 119 ~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 181 (953)
+|.+...++....... ..+...+|.++++|+.+.+.++..+ .....|.++.+|+.+++..
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCT
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCC
Confidence 6766654443333222 2234456666777776666544322 3334455555555554443
No 390
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=7.1e-14 Score=156.65 Aligned_cols=331 Identities=10% Similarity=-0.007 Sum_probs=224.2
Q ss_pred ecCc-cccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccC
Q 043900 19 SISP-HVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELG 97 (953)
Q Consensus 19 ~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (953)
+|+. +|.++.+|+.+.|.. .++.+...+|.++.+|+.++|.++ ++.+...+|.++.+|+.+.+..+ +......+|.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 5555 688999999999974 588888899999999999999866 66577788999999999988765 4446677788
Q ss_pred CccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccccceEE
Q 043900 98 SLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNISSITAF 177 (953)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 177 (953)
++..++........ .....+|.++++|+.+.+.++..+ +....|.++.+|+.+.+..| ++.....++.++..|+.+
T Consensus 138 ~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcccc--ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 87655554444333 245678999999999999876543 77788999999999999877 553556778899999999
Q ss_pred ecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeecccccC
Q 043900 178 DAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSITENSLG 257 (953)
Q Consensus 178 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~~n~l~ 257 (953)
.+..+... +...++ ...+|+.+.+.++ ++.....+|.++.+|+.+.+..+...-....+.....++.+....+.+.
T Consensus 214 ~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 214 EFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp CCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC
T ss_pred ecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec
Confidence 88777544 233333 4578888888654 3435667888899999999887755433333444455554444333222
Q ss_pred CCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeecCcccc
Q 043900 258 SRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWNNRLSG 337 (953)
Q Consensus 258 ~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~ 337 (953)
. .++... .+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++.
T Consensus 290 ~---------------------------------~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~ 333 (394)
T 4fs7_A 290 E---------------------------------KTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE 333 (394)
T ss_dssp T---------------------------------TTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred c---------------------------------cccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE
Confidence 1 112222 45666666543 44455566666666666666533 554
Q ss_pred cCCcCccCCCCCCeEEeccccccCCCCCCCCCc-eeeEEEccCCcCCCCCCccCCCCCCCcEE
Q 043900 338 TIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL-KVFNLDLSCNFLQGSIPSSLGQYKTLTII 399 (953)
Q Consensus 338 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~l~~L~L~~N~l~~~~p~~~~~l~~L~~L 399 (953)
+...+|.++++|+.+.+..| ++..-..+|.++ .|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 55666666666666666555 554445566654 4566666544 22 235678888887764
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=8.8e-16 Score=150.98 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=66.7
Q ss_pred ccCCccCceeecCCCccCcCCCccCCCCC-CCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 24 VGNLSFLKVLLLYNNSFNHGIPSEFDRLQ-RLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 24 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
+.++.+|++|+|++|+++. +|. +..+. +|++|+|++|.|++. ..|..+++|++|+|++|.|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455556666666666664 332 33333 566666666666532 445555555555555555553333333555555
Q ss_pred ceeeccccccccccCC--cccCCCcccEEecccccccccCCcc----ccccccccceecccccc
Q 043900 103 EHLSVSVNNLTGSIPS--SLGNLSSINTLFLTDNNLDGGIPDT----FGWLKNLATLAMAENWL 160 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~--~~~~L~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l 160 (953)
++|+|++|+|+ .+|. .++++++|++|++++|.++ ..|.. +..+++|++|++++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555554 3333 4555555555555555554 23332 44455555555554444
No 392
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.59 E-value=3e-15 Score=162.09 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=101.8
Q ss_pred HHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccch--------------hhHH--------HHHHHHHHHhh
Q 043900 627 YNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH--------------GAFK--------SFIAECNTLKN 684 (953)
Q Consensus 627 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------~~~~--------~~~~e~~~l~~ 684 (953)
.....-|++.+.||+|++|.||+|.+.. ++.||||+++.... .... ...+|...+.+
T Consensus 91 ~~rg~iY~I~~~IG~Gk~a~VY~a~d~~-G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r 169 (397)
T 4gyi_A 91 AARKDVYSVGSRIGVGKESDIMIVADEK-GKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA 169 (397)
T ss_dssp HHTTSCSEEEEEEEECSSEEEEEEECTT-CCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEecCEeeeCCceEEEEEECCC-CCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 3333459999999999999999999876 45899999752110 0001 12346666666
Q ss_pred cCCCCe--eEEEeeecccccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhC
Q 043900 685 IRHRNL--VKILTACSGVDYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHD 762 (953)
Q Consensus 685 l~h~ni--v~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~ 762 (953)
+.+..+ ...+++ ...++||||++|++|.++.. . .....++.|++.+|.|||+.
T Consensus 170 L~~~gv~vp~p~~~---------~~~~LVME~i~G~~L~~l~~--------------~--~~~~~l~~qll~~l~~lH~~ 224 (397)
T 4gyi_A 170 LYEEGFPVPEPIAQ---------SRHTIVMSLVDALPMRQVSS--------------V--PDPASLYADLIALILRLAKH 224 (397)
T ss_dssp HHHTTCSCCCEEEE---------ETTEEEEECCSCEEGGGCCC--------------C--SCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCeeeec---------cCceEEEEecCCccHhhhcc--------------c--HHHHHHHHHHHHHHHHHHHC
Confidence 644332 222322 23479999999999877652 1 12356889999999999999
Q ss_pred CCCCeEeecCCCCCeEecCCC----------cEEEeccccceec
Q 043900 763 CQPPITHCDLKPSNVLLDEEM----------MAHVSDFGLARFL 796 (953)
Q Consensus 763 ~~~~ivH~Dlkp~NIll~~~~----------~~kL~DfG~a~~~ 796 (953)
|||||||||.|||+++++ .+.|+||+-+...
T Consensus 225 ---gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 225 ---GLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp ---TEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred ---CCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccC
Confidence 999999999999998776 3899999988754
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1e-15 Score=150.41 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=100.0
Q ss_pred ccCCCCCCCcEEeCCCCccccccCcCccCCC-CCcEEeccCccccccCCcccCCccccceeeccccccccccCCcccCCC
Q 043900 46 SEFDRLQRLQVLALNNNSIGGEIPANISSCS-NLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLS 124 (953)
Q Consensus 46 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~ 124 (953)
..|.++.+|++|+|++|+++ .+|. +..+. +|++|+|++|.|++. ..|+.+++|++|+|++|+|++..+..|+.++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 35677888888888888888 5554 44444 888888888888854 5788888888888888888855445558888
Q ss_pred cccEEecccccccccCCc--cccccccccceecccccccCCCCCc----ccccccceEEecCCcccc
Q 043900 125 SINTLFLTDNNLDGGIPD--TFGWLKNLATLAMAENWLSGTIPSS----IFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 125 ~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~ 185 (953)
+|++|+|++|+|+ .+|. .|..+++|++|++++|.++ .+|.. +..+++|+.||++.|.+.
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888886 4554 6778888888888888887 55653 667777777777777665
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.4e-17 Score=167.40 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=64.7
Q ss_pred ccCCccCceeecCCCccCcCCCc------cCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccC
Q 043900 24 VGNLSFLKVLLLYNNSFNHGIPS------EFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELG 97 (953)
Q Consensus 24 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (953)
+.....++.++++.+.+++..|. .|..+++|++|+|++|.|++ +| .+.++++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666666666666665554 45555555555555555552 34 4444555555555555554 3444444
Q ss_pred CccccceeeccccccccccCCcccCCCcccEEecccccccccCC-ccccccccccceeccccccc
Q 043900 98 SLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIP-DTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 161 (953)
.+++|++|++++|++++ +| .++++++|++|++++|+++...+ +.+..+++|++|++++|.++
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 44445555555554442 23 34444444444444444442111 23444444444444444443
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=8.7e-17 Score=161.59 Aligned_cols=137 Identities=17% Similarity=0.223 Sum_probs=96.2
Q ss_pred CCCCCCCcEEeCCCCccccccCc------CccCCCCCcEEeccCccccccCCcccCCccccceeeccccccccccCCccc
Q 043900 48 FDRLQRLQVLALNNNSIGGEIPA------NISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLG 121 (953)
Q Consensus 48 ~~~l~~L~~L~L~~n~i~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 121 (953)
+.....++.++++.|.+++..|. .|..+++|++|+|++|.+++ +| .+.++++|++|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44456777777777777777666 77777778888888777774 55 7777777777777777777 5666667
Q ss_pred CCCcccEEecccccccccCCccccccccccceecccccccCCCC-CcccccccceEEecCCcccccccc
Q 043900 122 NLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIP-SSIFNISSITAFDAGMNQLQGVIP 189 (953)
Q Consensus 122 ~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~ 189 (953)
.+++|++|+|++|++++ +| .|..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++..|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 77777777777777774 34 57777777777777777763221 356666677777777777665544
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=4.6e-14 Score=137.46 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=60.2
Q ss_pred eeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCc
Q 043900 423 GLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNN 502 (953)
Q Consensus 423 ~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 502 (953)
.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 3444444444 2333332 455556666666655555556666666666666666665555555566666666666666
Q ss_pred ccccCCccccccccCceEeccCCcCcccCC
Q 043900 503 LSGKIPEFLVGFQLLENLNLSNNNLEGMVP 532 (953)
Q Consensus 503 l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 532 (953)
|++..+..|..+++|+.|+|++|++++..+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 665444455566666666666666655443
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=4.9e-14 Score=137.30 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=82.7
Q ss_pred cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 29 FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 29 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
..++|++++|+++. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35778888888887 66555 3778888888888887767778888888888888888886666667788888888888
Q ss_pred ccccccccCCcccCCCcccEEeccccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLD 137 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~ 137 (953)
+|+|++..+..|.++++|++|+|++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88888666667888888888888888876
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=5.1e-14 Score=137.60 Aligned_cols=105 Identities=24% Similarity=0.294 Sum_probs=78.2
Q ss_pred CceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeeccc
Q 043900 30 LKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVSV 109 (953)
Q Consensus 30 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (953)
-+.+++++|+++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3678888888876 565553 7788888888888866677777888888888888888755555567777888888888
Q ss_pred cccccccCCcccCCCcccEEeccccccc
Q 043900 110 NNLTGSIPSSLGNLSSINTLFLTDNNLD 137 (953)
Q Consensus 110 N~l~~~~p~~~~~L~~L~~L~L~~N~l~ 137 (953)
|+|++..+..|..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8877555555777778888888888776
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=9.1e-14 Score=135.81 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=57.8
Q ss_pred eeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCc
Q 043900 423 GLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNN 502 (953)
Q Consensus 423 ~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 502 (953)
.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3444444444 3343332 455555555555555555555555666666666666655444445556666666666666
Q ss_pred ccccCCccccccccCceEeccCCcCcccC
Q 043900 503 LSGKIPEFLVGFQLLENLNLSNNNLEGMV 531 (953)
Q Consensus 503 l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 531 (953)
|++..+..|..+++|+.|+|++|+|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 65444444555666666666666655443
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=5.1e-12 Score=141.50 Aligned_cols=144 Identities=11% Similarity=0.124 Sum_probs=93.1
Q ss_pred cEEEEEeCCCeeeeecCccccCCccCceeecCCCccCcCCCccCCCCC-CCcEEeCCCCccccccCcCccCCCCCcEEec
Q 043900 5 RVKILNLTSLKLAGSISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQ-RLQVLALNNNSIGGEIPANISSCSNLIQIRL 83 (953)
Q Consensus 5 ~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 83 (953)
.++.....+..-.-.||+.+..-. ....++.+...+|.+++ .|+.+.|..+ ++.+...+|.++.+|+.+.+
T Consensus 23 ~~~i~~y~g~~~~v~IP~~i~~~~-------~~~~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~ 94 (394)
T 4gt6_A 23 TATITKYTGNEHRITIPAQVTHGA-------YIYPVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTI 94 (394)
T ss_dssp CEEEEEECCCCSEEECCSEEEETT-------EEEEEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cEEEEEEeCCCceEEECCceeccc-------cceeeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEee
Confidence 344444444444446777653210 01235555667788774 5888888754 66577778888888888888
Q ss_pred cCcc---ccccCCcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccc
Q 043900 84 FYNE---LVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAEN 158 (953)
Q Consensus 84 ~~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (953)
..|. ++.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+. ..+....|..+.+|+.+.+..+
T Consensus 95 ~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 95 QDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp GGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT
T ss_pred cCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccccccce
Confidence 7764 55555667888888888777655 443556677778888888876543 3355666777777777766544
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=9e-11 Score=131.30 Aligned_cols=334 Identities=13% Similarity=0.144 Sum_probs=201.0
Q ss_pred eecCc-cccCCc-cCceeecCCCccCcCCCccCCCCCCCcEEeCCCCc---cccccCcCccCCCCCcEEeccCccccccC
Q 043900 18 GSISP-HVGNLS-FLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNS---IGGEIPANISSCSNLIQIRLFYNELVGKI 92 (953)
Q Consensus 18 ~~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 92 (953)
..|++ +|.+.+ .|+.+.+-.+ ++.+...+|.++.+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.+.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 36666 677774 5999999764 888889999999999999998874 77666788999999999998766 55466
Q ss_pred CcccCCccccceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccCCCCCcccccc
Q 043900 93 PSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSGTIPSSIFNIS 172 (953)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 172 (953)
...|.++.+|+.+.+..+. ......+|.++.+|+.+.+.++ ++.+...+|.+ .+|+.+.+..+-.. ....++.++.
T Consensus 130 ~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcc
Confidence 7789999999999998654 4366778999999999999876 44466667765 56888777655433 4445555555
Q ss_pred cceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCCCCCCCCccceeeec
Q 043900 173 SITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVPYLEKPQRLSVFSIT 252 (953)
Q Consensus 173 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~~~~L~~l~l~ 252 (953)
+++......+... .+...++. .......-..
T Consensus 206 ~l~~~~~~~~~~~-~~~~~~~~------------------------~~~~~~~~~~------------------------ 236 (394)
T 4gt6_A 206 ALSTITSDSESYP-AIDNVLYE------------------------KSANGDYALI------------------------ 236 (394)
T ss_dssp TCCEEEECCSSSC-BSSSCEEE------------------------ECTTSCEEEE------------------------
T ss_pred ccceecccccccc-cccceeec------------------------cccccccccc------------------------
Confidence 5555544333322 11100000 0000000000
Q ss_pred ccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEEeec
Q 043900 253 ENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLEMWN 332 (953)
Q Consensus 253 ~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 332 (953)
..... ..+..+.+. +.++.+...+|.++..|+.+.+.+
T Consensus 237 ----------------~~~~~-------------------------~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 237 ----------------RYPSQ-------------------------REDPAFKIP-NGVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp ----------------ECCTT-------------------------CCCSEEECC-TTEEEECTTTTTTCSSCCEEECCT
T ss_pred ----------------ccccc-------------------------cccceEEcC-CcceEcccceeeecccccEEeccc
Confidence 00000 011222221 122334455677777777777765
Q ss_pred CcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCceeeEEEccCCcCCCCCCccCCCCCCCcEEEcCCCccCCCCCc
Q 043900 333 NRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNLKVFNLDLSCNFLQGSIPSSLGQYKTLTIIDLSDNNLTGTIPP 412 (953)
Q Consensus 333 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~l~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 412 (953)
+..+ +...+|.++++|+.+.+. +.++ .+...+|.++.+|+.++|.++ ++
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~-~~i~-----------------------~I~~~aF~~c~~L~~i~lp~~-v~----- 323 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFS-SRIT-----------------------ELPESVFAGCISLKSIDIPEG-IT----- 323 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECC-TTCC-----------------------EECTTTTTTCTTCCEEECCTT-CC-----
T ss_pred ccce-ecCcccccccccccccCC-Cccc-----------------------ccCceeecCCCCcCEEEeCCc-cc-----
Confidence 5543 566677777777777764 2222 133456666777777666543 22
Q ss_pred cccCccccceeeeccCCcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCC
Q 043900 413 QFLGLSWLLIGLDLSRNQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKG 492 (953)
Q Consensus 413 ~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 492 (953)
.+-..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.+|.... ..+....+
T Consensus 324 --------------------~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~ 379 (394)
T 4gt6_A 324 --------------------QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG 379 (394)
T ss_dssp --------------------EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred --------------------EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence 123356667777777777544 554455667777777777777766542 35566667
Q ss_pred CcEEECCCCcc
Q 043900 493 LNVLDLSQNNL 503 (953)
Q Consensus 493 L~~L~Ls~N~l 503 (953)
|+.+.+..|.+
T Consensus 380 L~~i~i~~~~~ 390 (394)
T 4gt6_A 380 LQNLPVAPGSI 390 (394)
T ss_dssp C----------
T ss_pred CCEEEeCCCCE
Confidence 77777666554
No 402
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=3.2e-12 Score=140.66 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=87.3
Q ss_pred ceeecCCC-ccCcCCCccCCCCCCCcEEeCCC-CccccccCcCccCCCCCcEEeccCccccccCCcccCCccccceeecc
Q 043900 31 KVLLLYNN-SFNHGIPSEFDRLQRLQVLALNN-NSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKIEHLSVS 108 (953)
Q Consensus 31 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (953)
..++++++ +++. +|. |..+++|++|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 8887 666 88888999999985 89987767888899999999999999988888888899999999999
Q ss_pred ccccccccCCcccCCCcccEEeccccccc
Q 043900 109 VNNLTGSIPSSLGNLSSINTLFLTDNNLD 137 (953)
Q Consensus 109 ~N~l~~~~p~~~~~L~~L~~L~L~~N~l~ 137 (953)
+|+|++..+..|..++ |++|+|.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999866666666665 999999999887
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2.5e-14 Score=157.75 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCCcEEeCCCCccccccCcCccCC-----CCCcEEeccCccccccCCccc-CCccccceeeccccccccccCCcc-----
Q 043900 52 QRLQVLALNNNSIGGEIPANISSC-----SNLIQIRLFYNELVGKIPSEL-GSLSKIEHLSVSVNNLTGSIPSSL----- 120 (953)
Q Consensus 52 ~~L~~L~L~~n~i~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~----- 120 (953)
++|++|+|++|.|+......+..+ .+|++|+|++|.++......+ ..+++|++|+|++|+|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445566666665554333333222 456666666665543222222 234556666666666653332222
Q ss_pred cCCCcccEEeccccccccc----CCccccccccccceecccccccCC----CCCcccccccceEEecCCccccccccccc
Q 043900 121 GNLSSINTLFLTDNNLDGG----IPDTFGWLKNLATLAMAENWLSGT----IPSSIFNISSITAFDAGMNQLQGVIPLDF 192 (953)
Q Consensus 121 ~~L~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 192 (953)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|+|+.. +++.+...++|++|+|++|.|+......+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345566666666666421 233345566666666666666532 23444555666666777666654322222
Q ss_pred cc---ccccccEEEeeCccccCCCC
Q 043900 193 GF---TLQNLQFFSVFENQLTGAIP 214 (953)
Q Consensus 193 ~~---~l~~L~~L~L~~N~l~~~~~ 214 (953)
.. ..++|++|+|++|.|+....
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHH
Confidence 11 34667777777777664333
No 404
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2e-14 Score=158.61 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=101.0
Q ss_pred ccCceeecCCCccCcCCCccCCC-----CCCCcEEeCCCCccccccCcCcc-CCCCCcEEeccCccccccCCccc-----
Q 043900 28 SFLKVLLLYNNSFNHGIPSEFDR-----LQRLQVLALNNNSIGGEIPANIS-SCSNLIQIRLFYNELVGKIPSEL----- 96 (953)
Q Consensus 28 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~----- 96 (953)
++|++|+|++|.|+......|.. ..+|++|+|++|.|+......+. .+.+|++|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45777777777777543333322 25777777777777654433333 45677777777777764433333
Q ss_pred CCccccceeeccccccccc----cCCcccCCCcccEEeccccccccc----CCccccccccccceecccccccCC----C
Q 043900 97 GSLSKIEHLSVSVNNLTGS----IPSSLGNLSSINTLFLTDNNLDGG----IPDTFGWLKNLATLAMAENWLSGT----I 164 (953)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~ 164 (953)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|+.. +++.+..+++|++|+|++|.|+.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777777542 334446677777777777777632 245566677777777777777632 2
Q ss_pred CCcccccccceEEecCCcccccc
Q 043900 165 PSSIFNISSITAFDAGMNQLQGV 187 (953)
Q Consensus 165 p~~l~~l~~L~~L~L~~N~l~~~ 187 (953)
+..+...++|++|||++|.|+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 33344557777777777777643
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=3.2e-12 Score=140.69 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=74.3
Q ss_pred EEeCCCC-ccccccCcCccCCCCCcEEeccC-ccccccCCcccCCccccceeeccccccccccCCcccCCCcccEEeccc
Q 043900 56 VLALNNN-SIGGEIPANISSCSNLIQIRLFY-NELVGKIPSELGSLSKIEHLSVSVNNLTGSIPSSLGNLSSINTLFLTD 133 (953)
Q Consensus 56 ~L~L~~n-~i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 133 (953)
.++++++ +|+ .+|. |..+++|++|+|++ |.|++..+..|++|++|++|+|++|+|++..|.+|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 777 5777 77777777777775 777766666777777777777777777777777777777777777777
Q ss_pred ccccccCCccccccccccceeccccccc
Q 043900 134 NNLDGGIPDTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (953)
|+|++..+..|..++ |++|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777755555565555 777777766665
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.21 E-value=2.9e-11 Score=127.23 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=112.8
Q ss_pred HHHhhcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCC
Q 043900 626 LYNATDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQG 704 (953)
Q Consensus 626 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~ 704 (953)
+....++|++....+.|+.+.||++...+ ..+++|+...........+.+|+++++.+. +..+.++++++. .
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~~--~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~ 81 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGEN--ENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----H 81 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECSS--CEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----E
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECCC--CcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----c
Confidence 44556789888899999999999998653 479999986432223346888999999884 677788888753 2
Q ss_pred CCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC---------------------
Q 043900 705 NDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC--------------------- 763 (953)
Q Consensus 705 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~--------------------- 763 (953)
.+..++||||++|.++.+... +......++.+++++++.||+..
T Consensus 82 ~~~~~lv~e~i~G~~l~~~~~---------------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~ 146 (263)
T 3tm0_A 82 DGWSNLLMSEADGVLCSEEYE---------------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLL 146 (263)
T ss_dssp TTEEEEEEECCSSEEHHHHCC---------------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCeehhhccC---------------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHH
Confidence 367899999999999987642 01123478899999999999810
Q ss_pred -----------------------------------CCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 764 -----------------------------------QPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 764 -----------------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
.+.++|+|++|.||+++++..+.|+||+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 147 NNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp HTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred hccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 13699999999999998766677999998863
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=1.4e-08 Score=112.97 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=45.9
Q ss_pred CccccCCCccceeeecCCcccccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCcccccCCcccccc
Q 043900 436 PSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGF 514 (953)
Q Consensus 436 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 514 (953)
..+|.++.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 345666667777777666666555566667777777777544 55444556666677776666544 443334444444
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=2e-08 Score=111.62 Aligned_cols=302 Identities=11% Similarity=-0.000 Sum_probs=187.3
Q ss_pred cccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcccc
Q 043900 23 HVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLSKI 102 (953)
Q Consensus 23 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (953)
++..-.+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|... +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 455667889998864 588878889999999999999765 675667788877 6888888655 553555566654 79
Q ss_pred ceeeccccccccccCCcccCCCcccEEecccccccccCCccccccccccceecccccccC------------CCCCcccc
Q 043900 103 EHLSVSVNNLTGSIPSSLGNLSSINTLFLTDNNLDGGIPDTFGWLKNLATLAMAENWLSG------------TIPSSIFN 170 (953)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~p~~l~~ 170 (953)
+.+.+..+-.. ....+|.+. +|+.+.+-.+ ++.+....|..+.+++.+.+..+.... .....+..
T Consensus 116 ~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 99999866433 555566654 6777766554 444667778888888887776543221 11222334
Q ss_pred cccceEEecCCcccccccccccccccccccEEEeeCccccCCCCCCCcCCCCCcEEEcccccccCcCC-CCCCCCcccee
Q 043900 171 ISSITAFDAGMNQLQGVIPLDFGFTLQNLQFFSVFENQLTGAIPPAISNASNLELFQADVNKLTGEVP-YLEKPQRLSVF 249 (953)
Q Consensus 171 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~~~~L~~l 249 (953)
..++..+.+..+.- .+....+....+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.+.. .+.....|+.+
T Consensus 193 ~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 44555555443322 223333336778888877655 44466778888888988888655 332222 12222333333
Q ss_pred eecccccCCCCCCcccccccccccccccEEeccCCcccccCChhhhhccccCcEEEcccCcccccCCccccCCCCCCEEE
Q 043900 250 SITENSLGSRGHSNLNFLCSLTNSTRLNRLLINANNFGGLLPACISNLSTTLEMLLLDNNKIFGNIPAAIGKFVNLQRLE 329 (953)
Q Consensus 250 ~l~~n~l~~~~~~~~~~l~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 329 (953)
. +..+ +......+|..+ .+|+.+.+.++.++.+...+|.++.+|+.+.
T Consensus 269 ~------------------------------l~~~-i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 269 N------------------------------FYAK-VKTVPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp E------------------------------ECCC-CSEECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred c------------------------------cccc-ceeccccccccc-cccccccccccccceehhhhhcCCCCCCEEE
Confidence 3 2211 221222233333 5677777777777766677787778888888
Q ss_pred eecCcccccCCcCccCCCCCCeEEeccccccCCCCCCCCCc
Q 043900 330 MWNNRLSGTIPPAIGELQNLRELRLQRNKFLGNIPPSIGNL 370 (953)
Q Consensus 330 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 370 (953)
|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+.
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 7654 65566777888888887777544 443334444433
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.98 E-value=8.6e-10 Score=115.84 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=96.9
Q ss_pred hcCCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCC--eeEEEeeecccccCCCCc
Q 043900 630 TDGFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRN--LVKILTACSGVDYQGNDF 707 (953)
Q Consensus 630 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~ 707 (953)
..+|.+....+.|..+.||++...+ ++.+++|+.... ....+.+|+++++.+.+.+ +.++++++. .++.
T Consensus 19 ~~~~~~~~~~~gg~~~~v~~~~~~~-g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~ 89 (264)
T 1nd4_A 19 LFGYDWAQQTIGCSDAAVFRLSAQG-RPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGR 89 (264)
T ss_dssp TTTCEEEECSCTTSSCEEEEEECTT-SCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSC
T ss_pred cCCCceEecccCCCCceEEEEecCC-CCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCC
Confidence 3445554444466679999997654 347999997643 2245778999998885444 455777643 2356
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC------------------------
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC------------------------ 763 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------ 763 (953)
.++||||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 90 ~~~v~e~i~G~~l~--~~~-------------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (264)
T 1nd4_A 90 DWLLLGEVPGQDLL--SSH-------------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAG 151 (264)
T ss_dssp EEEEEECCSSEETT--TSC-------------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCCcccC--cCc-------------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcC
Confidence 89999999998884 210 11 1256777777888888641
Q ss_pred -------------------------------CCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 764 -------------------------------QPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 764 -------------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
...++|+|++|.||++++++.+.|+|||.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 152 LVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998877778999998864
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=1e-10 Score=127.57 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=38.5
Q ss_pred cccccceecccccccCCCCCccc---ccccceEEecCCcccccccccccc---cccccccEEEeeCccccCCCCCCCcC-
Q 043900 147 LKNLATLAMAENWLSGTIPSSIF---NISSITAFDAGMNQLQGVIPLDFG---FTLQNLQFFSVFENQLTGAIPPAISN- 219 (953)
Q Consensus 147 l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~- 219 (953)
+++|++|+|.+|.+.+..+..+. .+++|++|||+.|.+++.-...+. ..+++|+.|+|++|.|+......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 44555555555554422222221 245556666666655542211111 13556666666666655332222222
Q ss_pred CCCCcEEEccccc
Q 043900 220 ASNLELFQADVNK 232 (953)
Q Consensus 220 l~~L~~L~L~~N~ 232 (953)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 3446666665
No 411
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.90 E-value=6.1e-10 Score=119.68 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=122.2
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhc-CCCC--eeEEEeeecccccCCCCceeEEE
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNI-RHRN--LVKILTACSGVDYQGNDFKALVF 712 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~n--iv~~~~~~~~~~~~~~~~~~lv~ 712 (953)
.+.++.|.+..||++. ..+++|+.... .....+.+|+++++.+ .+.. +.+++.++... ......++||
T Consensus 25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~--~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS--ETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC--SSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC--CCCCcceEEE
Confidence 4568999999999864 25889986432 3456788999999887 3322 34454442211 1112458899
Q ss_pred eeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhC------------------------------
Q 043900 713 EFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHD------------------------------ 762 (953)
Q Consensus 713 e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~------------------------------ 762 (953)
|+++|.++.+... ..++..++..++.++++.++.||+.
T Consensus 96 ~~i~G~~l~~~~~------------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (304)
T 3sg8_A 96 TKIKGVPLTPLLL------------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSR 163 (304)
T ss_dssp ECCCCEECCHHHH------------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCCeECCcccc------------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcc
Confidence 9999988865331 2466777788888888888888861
Q ss_pred -------------------------CCCCeEeecCCCCCeEecC--CCcEEEeccccceecCCCCCccccccc---c---
Q 043900 763 -------------------------CQPPITHCDLKPSNVLLDE--EMMAHVSDFGLARFLPLSPAQTSSIDA---K--- 809 (953)
Q Consensus 763 -------------------------~~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~~~~~~~~---~--- 809 (953)
..+.++|+|++|.||++++ +..+.++||+.+..-....+....... .
T Consensus 164 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~ 243 (304)
T 3sg8_A 164 ELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGME 243 (304)
T ss_dssp TSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHH
T ss_pred cCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHH
Confidence 1246899999999999998 567889999998764321110000000 0
Q ss_pred ------ccccccc-ccccCCCCCCcccchHHHHHHHHHHHhCCCCC
Q 043900 810 ------GSIGYIA-PEYGLGSEVSINGDVYSYGILLLELVTRKKPV 848 (953)
Q Consensus 810 ------gt~~y~a-PE~~~~~~~~~~sDv~slG~vl~elltg~~pf 848 (953)
..+++.. |+.... .....+.|++|.++|.+.+|..+|
T Consensus 244 ~~~~~l~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 244 FVSKILNHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHHHHHHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0111112 222111 122358999999999999998875
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.89 E-value=5.1e-09 Score=115.45 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=106.3
Q ss_pred ccCcccccceeeEEEEEEcCCCeEEEEEEee--ccc-hhhHHHHHHHHHHHhhcC--CCCeeEEEeeecccccCCCCcee
Q 043900 635 SANEIGVGSFGSVYKGILDQGKTTVAVKVFN--LLH-HGAFKSFIAECNTLKNIR--HRNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 635 ~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~~~~~~ 709 (953)
..+.++.|.++.||++...+ ..+++|+.. ... ......+.+|+.+++.+. +..+.+++.++.+.. ..+..+
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~--~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~--~~g~~~ 117 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG--QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDES--VIGRAF 117 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS--CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTT--TTSSCE
T ss_pred eEEEcCCcccceEEEEEECC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCC--ccCCeE
Confidence 35678999999999998765 368888875 322 122356788999999986 456788888865331 124578
Q ss_pred EEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC--------------------------
Q 043900 710 LVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC-------------------------- 763 (953)
Q Consensus 710 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------------------------- 763 (953)
+||||++|..+.+.. ...++..++..++.+++++|+.||+..
T Consensus 118 ~vme~v~G~~l~~~~------------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (359)
T 3dxp_A 118 YIMEFVSGRVLWDQS------------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQ 185 (359)
T ss_dssp EEEECCCCBCCCCTT------------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHH
T ss_pred EEEEecCCeecCCCc------------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHH
Confidence 999999998775422 124678888999999999999999731
Q ss_pred -----------------------------CCCeEeecCCCCCeEecCCCc--EEEecccccee
Q 043900 764 -----------------------------QPPITHCDLKPSNVLLDEEMM--AHVSDFGLARF 795 (953)
Q Consensus 764 -----------------------------~~~ivH~Dlkp~NIll~~~~~--~kL~DfG~a~~ 795 (953)
.+.++|||++|.||+++.++. +.|+||+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 186 YKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999999875
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=4.4e-10 Score=122.62 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=35.7
Q ss_pred cccceEEecCCcccccccccccc--cccccccEEEeeCccccCC----CCCCCcCCCCCcEEEccccccc
Q 043900 171 ISSITAFDAGMNQLQGVIPLDFG--FTLQNLQFFSVFENQLTGA----IPPAISNASNLELFQADVNKLT 234 (953)
Q Consensus 171 l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 234 (953)
+++|+.|+|++|++.+..+..++ ..+++|++|+|+.|.|++. ++..+.++++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 55666666666666543322222 1356666666666666642 2233344566666666666655
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=6.8e-09 Score=102.11 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=32.5
Q ss_pred ccccceeeccccccccc----cCCcccCCCcccEEec--cccccccc----CCccccccccccceeccccccc
Q 043900 99 LSKIEHLSVSVNNLTGS----IPSSLGNLSSINTLFL--TDNNLDGG----IPDTFGWLKNLATLAMAENWLS 161 (953)
Q Consensus 99 l~~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 161 (953)
.++|++|+|++|+|... +..++...++|++|+| ++|.|+.. +.+.+...++|++|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555555432 2334455556666666 55665422 2233444566666666666654
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.49 E-value=5.6e-07 Score=97.10 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=99.3
Q ss_pred CCcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCC----CCeeEEEeeecccccCCCCc
Q 043900 632 GFASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRH----RNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 632 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~~~~~~~~~~~~~~~~ 707 (953)
.+...+.++.|....||++ + ..+++|+.... .....+.+|.++++.+.+ ..+.+++++ +.
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g-~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~ 101 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----N-EQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ---------SD 101 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----T-TTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CS
T ss_pred ceEEEEeCCCCCCceEEEE----C-CEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CC
Confidence 5566778999999999998 2 35888886432 224568899998888865 223445444 34
Q ss_pred eeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCC------------------------
Q 043900 708 KALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDC------------------------ 763 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------ 763 (953)
.++||||++|.++..... ..++..++..++.++++.++.||+..
T Consensus 102 ~~lvme~i~G~~l~~~~~------------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (320)
T 3r70_A 102 RFNIMKYIKGERITYEQY------------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKK 169 (320)
T ss_dssp SCEEEECCCCBCCCHHHH------------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHH
T ss_pred cEEEEeecCCcccccccc------------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHH
Confidence 689999999988864321 13566667777778888877777542
Q ss_pred ------------------------------------CCCeEeecCCCCCeEecCCCcEEEeccccceec
Q 043900 764 ------------------------------------QPPITHCDLKPSNVLLDEEMMAHVSDFGLARFL 796 (953)
Q Consensus 764 ------------------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 796 (953)
.+.++|+|++|.||+++.+..+.|+||+.+..-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 170 LLISILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 124599999999999999777899999998753
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=1.7e-08 Score=99.29 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCccccceeeccccccccc----cCCcccCCCcccEEeccccccccc----CCccccccccccceec--ccccccCC---
Q 043900 97 GSLSKIEHLSVSVNNLTGS----IPSSLGNLSSINTLFLTDNNLDGG----IPDTFGWLKNLATLAM--AENWLSGT--- 163 (953)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~--- 163 (953)
...++|++|+|++|+|... +...+...++|++|+|++|.|+.. +.+.+...++|++|+| ++|.|...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3334444444444444321 222333445566666666665422 2334455555666666 55655522
Q ss_pred -CCCcccccccceEEecCCcccc
Q 043900 164 -IPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 164 -~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
+.+.+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 2223334455666666666554
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=4.8e-08 Score=100.71 Aligned_cols=80 Identities=26% Similarity=0.362 Sum_probs=46.0
Q ss_pred cCCCccceeeecCCcccc--cCCCCccCCccccEEEccCccccCCCCccccCCC--CCcEEECCCCcccccCCc------
Q 043900 440 GNLKNLEVLDVFENKLKG--EIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLK--GLNVLDLSQNNLSGKIPE------ 509 (953)
Q Consensus 440 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------ 509 (953)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345666666666666665 3345555666666666666666643 2233333 666666666666655542
Q ss_pred -cccccccCceEe
Q 043900 510 -FLVGFQLLENLN 521 (953)
Q Consensus 510 -~~~~l~~L~~l~ 521 (953)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244556665553
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=2e-08 Score=103.57 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=79.5
Q ss_pred eecCCCccCcCCC-ccCCCCCCCcE--EeCCCCccccccCc----CccCCCCCcEEeccCccccc--cCCcccCCccccc
Q 043900 33 LLLYNNSFNHGIP-SEFDRLQRLQV--LALNNNSIGGEIPA----NISSCSNLIQIRLFYNELVG--KIPSELGSLSKIE 103 (953)
Q Consensus 33 L~L~~n~l~~~~~-~~~~~l~~L~~--L~L~~n~i~~~~p~----~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 103 (953)
|....|.-+..+. ..|...+.|.. ++++.|... .++. ...++++|+.|+|++|+|++ .+|..+..+++|+
T Consensus 121 l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~ 199 (267)
T 3rw6_A 121 MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 199 (267)
T ss_dssp HHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCC
T ss_pred HHhccchhccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCC
Confidence 3444444443322 22555556665 777888544 3333 22467888888888888886 4456677888889
Q ss_pred eeeccccccccccCCcccCCC--cccEEecccccccccCCc-------ccccccccccee
Q 043900 104 HLSVSVNNLTGSIPSSLGNLS--SINTLFLTDNNLDGGIPD-------TFGWLKNLATLA 154 (953)
Q Consensus 104 ~L~Ls~N~l~~~~p~~~~~L~--~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~ 154 (953)
.|+|++|+|++. ..+..+. +|++|+|++|.+.+..|+ .+..+++|+.|+
T Consensus 200 ~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 200 ILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999988854 2344444 899999999998866653 467888888775
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.33 E-value=1.6e-06 Score=91.51 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=58.9
Q ss_pred ccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCC---CeeEEEeeecccccCCCCceeEE
Q 043900 635 SANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHR---NLVKILTACSGVDYQGNDFKALV 711 (953)
Q Consensus 635 ~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv 711 (953)
..+.|+.|.++.||+++..++ +.++||+...........+.+|++.++.+.+. .+.+++++ +..++|
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG-~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~---------~~~~lv 88 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADG-TPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDRTLA 88 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTS-CEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETTEEE
T ss_pred ceeeeCCcchhheEEEEeCCC-CeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEe---------cCcEEE
Confidence 356799999999999988655 48999997543333346789999999999764 57788776 236899
Q ss_pred EeeccCCch
Q 043900 712 FEFMQNRSL 720 (953)
Q Consensus 712 ~e~~~~g~L 720 (953)
|||++++++
T Consensus 89 me~l~g~~~ 97 (288)
T 3d1u_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEecccCCC
Confidence 999999875
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.32 E-value=1.8e-06 Score=90.76 Aligned_cols=142 Identities=19% Similarity=0.121 Sum_probs=97.7
Q ss_pred cCCcccCccccccee-eEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCCCCce
Q 043900 631 DGFASANEIGVGSFG-SVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQGNDFK 708 (953)
Q Consensus 631 ~~~~~~~~ig~G~~g-~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~ 708 (953)
..|+. +.+..|..| .||+.....++..+++|+... .....+.+|+..++.+. +--+.++++++.. ++..
T Consensus 25 ~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-----~~~~ 95 (272)
T 4gkh_A 25 YGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRT-----PDDA 95 (272)
T ss_dssp TTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEE
T ss_pred cCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEE-----CCeE
Confidence 34443 345556655 699988877777899998753 23456788999988874 3336677777532 3678
Q ss_pred eEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhC--------------------------
Q 043900 709 ALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHD-------------------------- 762 (953)
Q Consensus 709 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-------------------------- 762 (953)
++|||+++|.++.+.... .......++.+++..++.||+.
T Consensus 96 ~lvme~l~G~~~~~~~~~--------------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (272)
T 4gkh_A 96 WLLTTAIPGKTAFQVLEE--------------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGL 161 (272)
T ss_dssp EEEEECCCSEEHHHHHHH--------------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEeeCCccccccccC--------------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhh
Confidence 999999999887765421 1112334566666666666631
Q ss_pred -----------------------------CCCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 763 -----------------------------CQPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 763 -----------------------------~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
..+.++|+|+.+.||++++++.+-|+||+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 162 VDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp CCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred hhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 012489999999999999887778999998864
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.26 E-value=4.1e-06 Score=89.51 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=92.6
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCC---CeeEEEeeecccccCCCCceeEEE
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHR---NLVKILTACSGVDYQGNDFKALVF 712 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv~ 712 (953)
.+.++.|....||+. + ..+++|+.. .......+.+|+++++.+.+. .+.+++.++. ...+..++||
T Consensus 24 v~~l~~G~~n~v~~v---g--~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~----~~~g~~~~v~ 92 (306)
T 3tdw_A 24 VESLGEGFRNYAILV---N--GDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK----RSDGNPFVGY 92 (306)
T ss_dssp EEEEEECSSEEEEEE---T--TTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE----CTTSCEEEEE
T ss_pred eeecCCCcceeEEEE---C--CEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc----cCCCceEEEE
Confidence 456888999999998 2 358888853 233456788999999999642 3556666542 1235678999
Q ss_pred eeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhC------------------------------
Q 043900 713 EFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHD------------------------------ 762 (953)
Q Consensus 713 e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~------------------------------ 762 (953)
||++|.++.+... ..++..+...++.++++.|+.||+.
T Consensus 93 e~i~G~~l~~~~~------------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~ 160 (306)
T 3tdw_A 93 RKVQGQILGEDGM------------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQV 160 (306)
T ss_dssp ECCCSEECHHHHH------------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHT
T ss_pred eccCCeECchhhh------------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhc
Confidence 9999988876321 1233444445555555555555532
Q ss_pred ---------------------------CCCCeEeecCCCCCeEecC---CCc-EEEecccccee
Q 043900 763 ---------------------------CQPPITHCDLKPSNVLLDE---EMM-AHVSDFGLARF 795 (953)
Q Consensus 763 ---------------------------~~~~ivH~Dlkp~NIll~~---~~~-~kL~DfG~a~~ 795 (953)
..+.++|+|++|.||+++. ++. +.|+||+.+..
T Consensus 161 ~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 161 FPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred ccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2336799999999999987 455 58999998864
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.06 E-value=1.8e-05 Score=86.49 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=89.6
Q ss_pred cccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCC--eeEEEeeecccccCCCCceeEE
Q 043900 634 ASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRN--LVKILTACSGVDYQGNDFKALV 711 (953)
Q Consensus 634 ~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~~~lv 711 (953)
...+.++.|....+|+.+.. +..+++|+.... ..+.+|+.+++.+.... +.++++++.. ..+..++|
T Consensus 44 ~~i~~l~gG~~n~~y~v~~~--g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~----~~g~~~lv 112 (362)
T 3ovc_A 44 SDLMQLSEGEESRAFSFDVG--GRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEF----SESLTYCI 112 (362)
T ss_dssp EEEEEEEECSSEEEEEEEET--TEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEES----SSSCEEEE
T ss_pred ceEEECCCCCcceEEEEEEC--CcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccC----CCCCeEEE
Confidence 34567899999999998863 457899987432 25788888888885433 4556665432 12567999
Q ss_pred EeeccCCchhhcc------------------ccCCcCC------cc-cCCccccCHHHH---------------------
Q 043900 712 FEFMQNRSLEEWL------------------HPITRED------KT-EEAPRSLNLLQR--------------------- 745 (953)
Q Consensus 712 ~e~~~~g~L~~~l------------------~~~~~~~------~~-~~~~~~l~~~~~--------------------- 745 (953)
|||++|.++.+.- +...... .. ......-+|.+.
T Consensus 113 ~e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~ 192 (362)
T 3ovc_A 113 SRRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVS 192 (362)
T ss_dssp EECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTH
T ss_pred EEecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999987765321 1000000 00 000000011111
Q ss_pred HHHHHHHHHHHHHHhhC-CCCCeEeecCCCCCeEecCCCcEEEeccccceec
Q 043900 746 LNIGIDVACALSYLHHD-CQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFL 796 (953)
Q Consensus 746 ~~i~~~i~~~L~~LH~~-~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 796 (953)
......+....+++... ..+.++|+|+++.||++++++.+.|+||+.+..-
T Consensus 193 ~~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 193 ASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred ccchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 01111222222233221 1257899999999999988878889999998753
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.97 E-value=2.2e-05 Score=86.00 Aligned_cols=86 Identities=3% Similarity=-0.052 Sum_probs=55.9
Q ss_pred cCcc-cccceeeEEEEEEc---C---CCeEEEEEEeeccc---hhhHHHHHHHHHHHhhcC-C--CCeeEEEeeeccccc
Q 043900 636 ANEI-GVGSFGSVYKGILD---Q---GKTTVAVKVFNLLH---HGAFKSFIAECNTLKNIR-H--RNLVKILTACSGVDY 702 (953)
Q Consensus 636 ~~~i-g~G~~g~Vy~~~~~---~---~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~-h--~niv~~~~~~~~~~~ 702 (953)
.+.| +.|....+|+.... + +++.+++|+..... ......+.+|+.+++.+. + -.+.+++.++.....
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 4567 88999999998764 1 13578899875322 101245677888888873 2 356777777533211
Q ss_pred CCCCceeEEEeeccCCchhhc
Q 043900 703 QGNDFKALVFEFMQNRSLEEW 723 (953)
Q Consensus 703 ~~~~~~~lv~e~~~~g~L~~~ 723 (953)
.+..++||||++|..+.+.
T Consensus 105 --~g~~~~v~e~l~G~~l~~~ 123 (357)
T 3ats_A 105 --LGTPFFLMDYVEGVVPPDV 123 (357)
T ss_dssp --TSSCEEEEECCCCBCCCBT
T ss_pred --cCCceEEEEecCCCChhhc
Confidence 1356899999998877653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=2.3e-06 Score=81.49 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCcc-ccccCCcccCCc----cccceeeccccc-cccccC
Q 043900 44 IPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNE-LVGKIPSELGSL----SKIEHLSVSVNN-LTGSIP 117 (953)
Q Consensus 44 ~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p 117 (953)
+|.....--+|++|||+++.|+...-..+.++++|++|+|++|. |+...-..++.+ ++|++|+|++|. |++.--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333467777777777766555566667777777777764 543333334443 356777776664 554433
Q ss_pred CcccCCCcccEEeccccc
Q 043900 118 SSLGNLSSINTLFLTDNN 135 (953)
Q Consensus 118 ~~~~~L~~L~~L~L~~N~ 135 (953)
..+.++++|++|+|+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 445566666666666654
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.86 E-value=2.2e-05 Score=87.35 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=48.8
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccch-------hhHHHHHHHHHHHhhcCC--C-CeeEEEeeecccccCCC
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHH-------GAFKSFIAECNTLKNIRH--R-NLVKILTACSGVDYQGN 705 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~-niv~~~~~~~~~~~~~~ 705 (953)
.+.+|.|..+.||+++...+++.|+||....... ....++..|.++++.+.. + .+.+++.+. .
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d-------~ 107 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD-------T 107 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE-------T
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc-------C
Confidence 4679999999999998765556899998653211 123456778888887732 3 344555442 1
Q ss_pred CceeEEEeeccCC
Q 043900 706 DFKALVFEFMQNR 718 (953)
Q Consensus 706 ~~~~lv~e~~~~g 718 (953)
+..++||||+++.
T Consensus 108 ~~~~lvmE~l~g~ 120 (397)
T 2olc_A 108 EMAVTVMEDLSHL 120 (397)
T ss_dssp TTTEEEECCCTTS
T ss_pred CccEEEEEeCCCc
Confidence 3457999999764
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=2.7e-06 Score=81.04 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=74.6
Q ss_pred ecCccccCCccCceeecCCCccCcCCCccCCCCCCCcEEeCCCCc-cccccCcCccCC----CCCcEEeccCcc-ccccC
Q 043900 19 SISPHVGNLSFLKVLLLYNNSFNHGIPSEFDRLQRLQVLALNNNS-IGGEIPANISSC----SNLIQIRLFYNE-LVGKI 92 (953)
Q Consensus 19 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~ 92 (953)
.+|.....-..|++|||++|.|+..--..+.++++|++|+|++|. |+...-..+..+ ++|++|+|++|. |+...
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 345533233469999999999998666778999999999999995 876666667765 479999999985 87554
Q ss_pred CcccCCccccceeeccccc-cc
Q 043900 93 PSELGSLSKIEHLSVSVNN-LT 113 (953)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~-l~ 113 (953)
-..+.++++|++|+|+++. ++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 5567889999999999986 44
No 427
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.70 E-value=0.00011 Score=79.92 Aligned_cols=153 Identities=19% Similarity=0.149 Sum_probs=81.0
Q ss_pred CcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC--CCCeeEEEeeecccc-cCCCCceeEEEe
Q 043900 637 NEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR--HRNLVKILTACSGVD-YQGNDFKALVFE 713 (953)
Q Consensus 637 ~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~-~~~~~~~~lv~e 713 (953)
+.|+.|..+.||++...++ .+++|+.... ...+..|+.+++.+. .-.+.+++....+.. ....+..++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~--~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG--AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEETTE--EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeCCC--CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 4566678899999987543 5899998642 123344555555552 112333333211100 012356789999
Q ss_pred eccCCchhh--------------ccccCCcCCc-cc---CCccccCHHH-------------------------------
Q 043900 714 FMQNRSLEE--------------WLHPITREDK-TE---EAPRSLNLLQ------------------------------- 744 (953)
Q Consensus 714 ~~~~g~L~~--------------~l~~~~~~~~-~~---~~~~~l~~~~------------------------------- 744 (953)
|++|..+.. .+|....... .. .......|..
T Consensus 112 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T 2q83_A 112 WIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQE 191 (346)
T ss_dssp CCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred eecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 999865531 1111110000 00 0000112211
Q ss_pred HHHHHHHHHHHHHHHhh----------CCCCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 745 RLNIGIDVACALSYLHH----------DCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 745 ~~~i~~~i~~~L~~LH~----------~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
...+..++..++++|++ .....++|||+++.||+++.++.+.++||+.+..
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 192 IDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 11122234456667763 1245899999999999998888999999998763
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.56 E-value=0.00019 Score=75.87 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=55.5
Q ss_pred CcccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-C--CCeeEEEeeecccccCCCCcee
Q 043900 633 FASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-H--RNLVKILTACSGVDYQGNDFKA 709 (953)
Q Consensus 633 ~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h--~niv~~~~~~~~~~~~~~~~~~ 709 (953)
....+.+|.|..+.||+.+..++ +.|++|+...........+..|+..|+.+. . --+.+++++ +..+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG-~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~---------~~~~ 86 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADG-TPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDRT 86 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTS-CEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETTE
T ss_pred eEEEEecCCCCCeEEEEEEECCC-CEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec---------cCce
Confidence 44567799999999999998776 489999875443333456788999888873 2 235556655 2347
Q ss_pred EEEeeccCCch
Q 043900 710 LVFEFMQNRSL 720 (953)
Q Consensus 710 lv~e~~~~g~L 720 (953)
+||||++++..
T Consensus 87 lv~e~l~~~~~ 97 (288)
T 3f7w_A 87 LAMEWVDERPP 97 (288)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEeecccCC
Confidence 89999987543
No 429
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.45 E-value=5.6e-05 Score=84.73 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccccccCCC---CCCcccchHHHHHHHHH
Q 043900 764 QPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPEYGLGS---EVSINGDVYSYGILLLE 840 (953)
Q Consensus 764 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~sDv~slG~vl~e 840 (953)
.+.++|||++|.||+++.++ ++++||+.+..-...-+..... ..-...|.+|+..... ......++.+....+|+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYL-GNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN 308 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHH-HHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHH-HHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence 34899999999999998876 9999999997532110000000 0012346676654321 12233566688888888
Q ss_pred HHhCC
Q 043900 841 LVTRK 845 (953)
Q Consensus 841 lltg~ 845 (953)
.+++.
T Consensus 309 ~y~~~ 313 (420)
T 2pyw_A 309 LFNKR 313 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 430
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.32 E-value=0.0011 Score=71.04 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=90.8
Q ss_pred CCcCHHHHHHhhcCCcc-----cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCC--ee
Q 043900 619 PNISYQNLYNATDGFAS-----ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRN--LV 691 (953)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-----~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv 691 (953)
..++.+++......|.. .+.|+.|....+|+....++ .+++|+.... .....+..|+.+++.+.... +.
T Consensus 5 ~~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g--~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP 80 (322)
T 2ppq_A 5 TDITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD--PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCP 80 (322)
T ss_dssp CCCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC--CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc--cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCC
Confidence 34566666666666654 24467788899999987654 5889988642 12234556777777763212 23
Q ss_pred EEEeeecccc-cCCCCceeEEEeeccCCchhhc--------------cccCCcCCcccCC---ccccCHHHHHH------
Q 043900 692 KILTACSGVD-YQGNDFKALVFEFMQNRSLEEW--------------LHPITREDKTEEA---PRSLNLLQRLN------ 747 (953)
Q Consensus 692 ~~~~~~~~~~-~~~~~~~~lv~e~~~~g~L~~~--------------l~~~~~~~~~~~~---~~~l~~~~~~~------ 747 (953)
+++....+.. ....+..+++|+|++|..+... ++..... ..... .....|.....
T Consensus 81 ~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~ 159 (322)
T 2ppq_A 81 LPLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEG-FEIKRPNALSVDGWKVLWDKSEERA 159 (322)
T ss_dssp CBCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTT-CCCCCBCTTSHHHHHHHHHHHGGGG
T ss_pred cccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCcccCccChHHHHHHHHHHHHHH
Confidence 3332211100 0112456899999988654321 1111000 00000 00011221110
Q ss_pred ------HHHHHHHHHHHHhhC----CCCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 748 ------IGIDVACALSYLHHD----CQPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 748 ------i~~~i~~~L~~LH~~----~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
+...+...++++++. ...+++|+|+.+.||++++++.+.++||+.+..
T Consensus 160 ~~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 160 DEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp GGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HhhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011233445555432 234799999999999999876668999998863
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=4.2e-05 Score=74.28 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCccCceeecCCC-ccCcC----CCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccCccccccCCcccCCcc
Q 043900 26 NLSFLKVLLLYNN-SFNHG----IPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFYNELVGKIPSELGSLS 100 (953)
Q Consensus 26 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (953)
+-+.|++|+|++| +|... +.+++..-+.|++|+|++|+|....-..|. +.+..-+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA--------------------~aL~~N~ 98 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI--------------------ELIETSP 98 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH--------------------HHHHHCS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH--------------------HHHhcCC
Confidence 3345566666553 44431 233344445555555555555432222221 1222334
Q ss_pred ccceeeccccccccc----cCCcccCCCcccEEeccccc---ccc----cCCccccccccccceecccccc
Q 043900 101 KIEHLSVSVNNLTGS----IPSSLGNLSSINTLFLTDNN---LDG----GIPDTFGWLKNLATLAMAENWL 160 (953)
Q Consensus 101 ~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L~~N~---l~~----~~~~~~~~l~~L~~L~L~~N~l 160 (953)
.|++|+|++|+|... +-+++..-+.|++|+|++|. +.. .+.+.+...+.|+.|+++.|.+
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 455555555554431 22234444456666665442 221 1223444555666666665544
No 432
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.24 E-value=0.0015 Score=69.21 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=89.3
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcC---CCCeeEEEeeecccccCCCCceeEEE
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR---HRNLVKILTACSGVDYQGNDFKALVF 712 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~~~~~~lv~ 712 (953)
.+.|+.|....+|+.... +..+++|+.... ....+..|++.++.+. ...+.++++++.. .+..++||
T Consensus 41 ~~~l~gG~~n~~y~v~~~--~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lvm 110 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE--VQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLLL 110 (312)
T ss_dssp EEEECCSSSSEEEEEESS--SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEEE
T ss_pred eEEeCCccceeeeEEEEC--CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEEE
Confidence 467899999999999864 347889987532 3466788988888883 3567778777532 35789999
Q ss_pred eeccCCchhh-----------ccccCCc-CCccc-----------CCccccCHHHHH---HHHH----------------
Q 043900 713 EFMQNRSLEE-----------WLHPITR-EDKTE-----------EAPRSLNLLQRL---NIGI---------------- 750 (953)
Q Consensus 713 e~~~~g~L~~-----------~l~~~~~-~~~~~-----------~~~~~l~~~~~~---~i~~---------------- 750 (953)
||+++..+.. .++.... ..... .....-+|.+.. ++..
T Consensus 111 e~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~ 190 (312)
T 3jr1_A 111 EALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNID 190 (312)
T ss_dssp ECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHH
T ss_pred EeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 9999876531 1222211 00000 001112444321 1111
Q ss_pred HHHHH-HHHHhh-CCCCCeEeecCCCCCeEecCCCcEEEeccc
Q 043900 751 DVACA-LSYLHH-DCQPPITHCDLKPSNVLLDEEMMAHVSDFG 791 (953)
Q Consensus 751 ~i~~~-L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 791 (953)
+++.. ...|.. ..++.++|+|+.+.|++++.++ +.|.|++
T Consensus 191 ~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 191 LIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 11111 223321 2356899999999999999887 8899974
No 433
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=4.2e-05 Score=74.24 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=79.1
Q ss_pred ccCCCCCcEEeccCc-cccc----cCCcccCCccccceeeccccccccccC----CcccCCCcccEEeccccccccc---
Q 043900 72 ISSCSNLIQIRLFYN-ELVG----KIPSELGSLSKIEHLSVSVNNLTGSIP----SSLGNLSSINTLFLTDNNLDGG--- 139 (953)
Q Consensus 72 ~~~l~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~L~~L~~L~L~~N~l~~~--- 139 (953)
+.+-+.|++|+|++| .|.. .+-+.+..-+.|+.|+|++|+|...-- +++..-+.|++|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 334556666666664 5542 234456667788888888888875433 3445668999999999999743
Q ss_pred -CCccccccccccceeccccc---ccC----CCCCcccccccceEEecCCcccc
Q 043900 140 -IPDTFGWLKNLATLAMAENW---LSG----TIPSSIFNISSITAFDAGMNQLQ 185 (953)
Q Consensus 140 -~~~~~~~l~~L~~L~L~~N~---l~~----~~p~~l~~l~~L~~L~L~~N~l~ 185 (953)
+.+++...+.|++|+|++|. +.. .+.+.+..-++|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33456677889999998764 332 13345667789999999998865
No 434
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.05 E-value=0.0017 Score=68.83 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=44.4
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCe-eEEEeeecccccCCCCceeEEEee
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNL-VKILTACSGVDYQGNDFKALVFEF 714 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv~e~ 714 (953)
.+.|+.|....+|++ ..+++|+....... .....+|+.+++.+....+ .++++++ .+.-++|+||
T Consensus 23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~-------~~~~~~v~e~ 88 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA------GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD-------PATGVMVTRY 88 (301)
T ss_dssp CEEEESCSSEEEEEE------TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC-------TTTCCEEEEC
T ss_pred eeEcCCcccccccee------eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE-------CCCCEEEEee
Confidence 678999999999999 25889988643221 1123457777776632222 4555542 1234789999
Q ss_pred c-cCCchh
Q 043900 715 M-QNRSLE 721 (953)
Q Consensus 715 ~-~~g~L~ 721 (953)
+ ++.++.
T Consensus 89 i~~g~~l~ 96 (301)
T 3dxq_A 89 IAGAQTMS 96 (301)
T ss_dssp CTTCEECC
T ss_pred cCCCccCC
Confidence 9 665553
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.97 E-value=0.0024 Score=68.62 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=91.1
Q ss_pred CCCCcCHHHHHHhhcCCcc-----cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCC--C
Q 043900 617 SFPNISYQNLYNATDGFAS-----ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHR--N 689 (953)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~-----~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~--n 689 (953)
++...+.+.+....+.|.+ ...++ |....||++...++ +.+++|+..... .....+..|..+++.+... .
T Consensus 7 ~~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g-~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~ 83 (328)
T 1zyl_A 7 TFQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDR-RRFVVKFYRPER-WTADQILEEHQFALQLVNDEVP 83 (328)
T ss_dssp CCCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTC-CCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCC-CEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCe
Confidence 3455666666655554432 23466 88889999877554 368999986321 1234566788887777422 2
Q ss_pred eeEEEeeecccc-cCCCCceeEEEeeccCCchhh-----------c---cccCCcCCcccCCccccCHHH----------
Q 043900 690 LVKILTACSGVD-YQGNDFKALVFEFMQNRSLEE-----------W---LHPITREDKTEEAPRSLNLLQ---------- 744 (953)
Q Consensus 690 iv~~~~~~~~~~-~~~~~~~~lv~e~~~~g~L~~-----------~---l~~~~~~~~~~~~~~~l~~~~---------- 744 (953)
+.+++.. .+.. ....+..++||||++|..+.. . ++...... ........++..
T Consensus 84 vp~~~~~-~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 161 (328)
T 1zyl_A 84 VAAPVAF-NGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQ-LFIHRPTIGLNEYLIEPRKLFE 161 (328)
T ss_dssp BCCCCCB-TTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSS-CCSSSCBCSHHHHTHHHHHHHH
T ss_pred ecceeec-CCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccC-CCccCCCCCHHHHHhhHHHHHh
Confidence 3444433 1110 111345678999998865431 0 11100000 000001111111
Q ss_pred ------------HHHHHHHHHHHHHHHhh-CCCCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 745 ------------RLNIGIDVACALSYLHH-DCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 745 ------------~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
....+.+++..++.... .....++|||+++.||+++ + .+.++||+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 162 DATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp TCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 11122222222222211 1234789999999999999 4 899999988864
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.94 E-value=0.0016 Score=71.03 Aligned_cols=148 Identities=11% Similarity=0.143 Sum_probs=84.1
Q ss_pred cCcccccceeeEEEEEEcC-------CCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCCCCc
Q 043900 636 ANEIGVGSFGSVYKGILDQ-------GKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 707 (953)
.+.+..|-...+|++...+ +++.|++|+..... .......+|..+++.+. +.-..++++++. +
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~-----~--- 125 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVMFAILAERSLGPQLYGVFP-----E--- 125 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET-----T---
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-chHHHHHHHHHHHHHHHhcCCCCeEEEEcC-----C---
Confidence 3567788889999998753 33579999874321 23455668999888873 333356666642 1
Q ss_pred eeEEEeeccCCchhhc-ccc-------------CCcCCcccCCcccc--CHHHHHHHHHHHHH-----------------
Q 043900 708 KALVFEFMQNRSLEEW-LHP-------------ITREDKTEEAPRSL--NLLQRLNIGIDVAC----------------- 754 (953)
Q Consensus 708 ~~lv~e~~~~g~L~~~-l~~-------------~~~~~~~~~~~~~l--~~~~~~~i~~~i~~----------------- 754 (953)
.+||||++|.++..- +.. ...... ...... -+.++.++..++..
T Consensus 126 -g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~--~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l 202 (379)
T 3feg_A 126 -GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEM--PFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSL 202 (379)
T ss_dssp -EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCC--SSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTH
T ss_pred -ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCC--CCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHH
Confidence 289999998666421 100 000000 011112 24455555544322
Q ss_pred --HHHHHhh----C-CCCCeEeecCCCCCeEecCC----CcEEEecccccee
Q 043900 755 --ALSYLHH----D-CQPPITHCDLKPSNVLLDEE----MMAHVSDFGLARF 795 (953)
Q Consensus 755 --~L~~LH~----~-~~~~ivH~Dlkp~NIll~~~----~~~kL~DfG~a~~ 795 (953)
.++.|.+ . ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 203 ~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 203 KDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 2233321 1 23479999999999999876 7899999998864
No 437
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.92 E-value=0.0014 Score=59.41 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred EEEccCcccc-CCCCccccCCCCCcEEECCCCcccccCCccccccccCceEeccCCcCc
Q 043900 471 QLEMQGNFLQ-GPIPSSLSSLKGLNVLDLSQNNLSGKIPEFLVGFQLLENLNLSNNNLE 528 (953)
Q Consensus 471 ~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 528 (953)
.++.+++.|+ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23343322 24566666666666544555556666666666666654
No 438
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.90 E-value=0.0033 Score=70.46 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=48.8
Q ss_pred cCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCe-eEEEeeecccccCCCCceeEEEee
Q 043900 636 ANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNL-VKILTACSGVDYQGNDFKALVFEF 714 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv~e~ 714 (953)
.+.|+.|-...+|++...+++..|++|+........ -...+|..+++.+...++ .++++++. + ..||||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~-------~--G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT-------N--GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET-------T--EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC-------C--eEEEEe
Confidence 467888999999999987644678899875322211 112578888888854434 56666641 1 359999
Q ss_pred ccCCchh
Q 043900 715 MQNRSLE 721 (953)
Q Consensus 715 ~~~g~L~ 721 (953)
++|.++.
T Consensus 183 I~G~~l~ 189 (458)
T 2qg7_A 183 MDGYALS 189 (458)
T ss_dssp CCSEECC
T ss_pred eCCccCC
Confidence 9886654
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.82 E-value=0.0025 Score=71.12 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred cCcccccceeeEEEEEEcC-------CCeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCCCCc
Q 043900 636 ANEIGVGSFGSVYKGILDQ-------GKTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 707 (953)
.+.|+.|....||++...+ .++.|++|+.... .....+.+|..+++.+. +.-..++++.+. +
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~-----~--- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS-----G--- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET-----T---
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC-----C---
Confidence 4568889999999998763 2357999998431 11145557888888884 322356666532 1
Q ss_pred eeEEEeeccCCchh
Q 043900 708 KALVFEFMQNRSLE 721 (953)
Q Consensus 708 ~~lv~e~~~~g~L~ 721 (953)
.+||||++|.++.
T Consensus 148 -g~v~e~l~G~~l~ 160 (429)
T 1nw1_A 148 -GRLEEYIPSRPLS 160 (429)
T ss_dssp -EEEECCCCEEECC
T ss_pred -CEEEEEeCCcccC
Confidence 3899999875553
No 440
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.69 E-value=0.0063 Score=65.47 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=28.0
Q ss_pred CCCeEeecCCCCCeEecCC----CcEEEecccccee
Q 043900 764 QPPITHCDLKPSNVLLDEE----MMAHVSDFGLARF 795 (953)
Q Consensus 764 ~~~ivH~Dlkp~NIll~~~----~~~kL~DfG~a~~ 795 (953)
...++|||+.+.||+++.+ +.+.++||+.+..
T Consensus 182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 4589999999999999875 6899999998875
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.66 E-value=0.0026 Score=57.63 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=36.1
Q ss_pred eeeecCCccc-ccCCCCccCCccccEEEccCccccCCCCccccCCCCCcEEECCCCccc
Q 043900 447 VLDVFENKLK-GEIPSTLGSCKKLEQLEMQGNFLQGPIPSSLSSLKGLNVLDLSQNNLS 504 (953)
Q Consensus 447 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 504 (953)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666654 23443332 35677777777777666666777777777888877765
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.50 E-value=0.0049 Score=67.47 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=44.5
Q ss_pred cCcccccceeeEEEEEEcCC--------CeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCC-eeEEEeeecccccCCCC
Q 043900 636 ANEIGVGSFGSVYKGILDQG--------KTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRN-LVKILTACSGVDYQGND 706 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~~~ 706 (953)
.+.++.|....+|++...++ ++.+++|+....... ......|.++++.+.... +.++++..
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--------- 107 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--------- 107 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE---------
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec---------
Confidence 35678888899999987642 247889987543221 112356788887774223 44666542
Q ss_pred ceeEEEeeccCCch
Q 043900 707 FKALVFEFMQNRSL 720 (953)
Q Consensus 707 ~~~lv~e~~~~g~L 720 (953)
.-++||||++|..+
T Consensus 108 ~~~~v~e~i~G~~l 121 (369)
T 3c5i_A 108 NGGRIEEWLYGDPL 121 (369)
T ss_dssp TTEEEEECCCSEEC
T ss_pred CCcEEEEEecCCcC
Confidence 12689999988654
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.43 E-value=0.011 Score=63.65 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.5
Q ss_pred CCCeEeecCCCCCeEecCCCcEEEecccccee
Q 043900 764 QPPITHCDLKPSNVLLDEEMMAHVSDFGLARF 795 (953)
Q Consensus 764 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 795 (953)
...++|+|+.+.||++++++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 34799999999999999888899999988865
No 444
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.37 E-value=0.0063 Score=59.15 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=65.7
Q ss_pred CchhhccccCCcCCcccCCccccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEeccccceecC
Q 043900 718 RSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLP 797 (953)
Q Consensus 718 g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~ 797 (953)
-+|.+.++. ...++++.++|.++.|.+.+|.-.-... .-..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~---------~~~PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~--- 97 (229)
T 2yle_A 33 LSLEEILRL---------YNQPINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD--- 97 (229)
T ss_dssp EEHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C------
T ss_pred ccHHHHHHH---------cCCCcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc---
Confidence 378888853 3457999999999999999987762110 101223456889999999888774 1111
Q ss_pred CCCCcccccccccccccccccccCCCCCCcccchHHHHHHHHHHHhCCCC
Q 043900 798 LSPAQTSSIDAKGSIGYIAPEYGLGSEVSINGDVYSYGILLLELVTRKKP 847 (953)
Q Consensus 798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDv~slG~vl~elltg~~p 847 (953)
.....+.|||... ...+.+.=|||+|+++|..+-=..|
T Consensus 98 -----------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 -----------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp --------------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred -----------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0223466888753 3556788999999999999974433
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.77 E-value=0.025 Score=61.72 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=84.3
Q ss_pred cCcccccceeeEEEEEEcCC-------CeEEEEEEeeccchh------------------hHHHHHHHHHHHhhcC-CCC
Q 043900 636 ANEIGVGSFGSVYKGILDQG-------KTTVAVKVFNLLHHG------------------AFKSFIAECNTLKNIR-HRN 689 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~-------~~~vavK~~~~~~~~------------------~~~~~~~e~~~l~~l~-h~n 689 (953)
.+.|..|-...+|++...++ .+.|++++.-...+. ..+....|..+++.+. +.-
T Consensus 57 v~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi 136 (401)
T 3f2s_A 57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL 136 (401)
T ss_dssp EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCC
Confidence 35677788999999987642 357889987532211 0112335888888874 444
Q ss_pred eeEEEeeecccccCCCCceeEEEeeccCCchhhcc-cc-------------CCcCCcccCCccccC--HHHHHHHHHHHH
Q 043900 690 LVKILTACSGVDYQGNDFKALVFEFMQNRSLEEWL-HP-------------ITREDKTEEAPRSLN--LLQRLNIGIDVA 753 (953)
Q Consensus 690 iv~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l-~~-------------~~~~~~~~~~~~~l~--~~~~~~i~~~i~ 753 (953)
..++++++. + .+|+||++|.+|..-- .. ...... ....... +..+.++..++.
T Consensus 137 ~Pkl~~~~~-----~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~--~~~~~~~~l~~~i~~~~~~l~ 205 (401)
T 3f2s_A 137 GPKLYGIFP-----Q----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKM--PFNKEPKWLFGTMEKYLKEVL 205 (401)
T ss_dssp SCCEEEEET-----T----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCC--SSCCSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeC-----C----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCC--CCCCCcchHHHHHHHHHHHHH
Confidence 556776632 1 2899999976653211 00 000000 0111122 233333433321
Q ss_pred ----------------------HHH----HHHhhC-CCCCeEeecCCCCCeEecCC------CcEEEecccccee
Q 043900 754 ----------------------CAL----SYLHHD-CQPPITHCDLKPSNVLLDEE------MMAHVSDFGLARF 795 (953)
Q Consensus 754 ----------------------~~L----~~LH~~-~~~~ivH~Dlkp~NIll~~~------~~~kL~DfG~a~~ 795 (953)
.-+ ++|... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 206 RIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HCCCCSHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hccCcchhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 222221 23468999999999999876 7899999988863
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.72 E-value=0.039 Score=60.88 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=48.2
Q ss_pred cCcccccceeeEEEEEEcCC-------CeEEEEEEeeccchhhHHHHHHHHHHHhhcC-CCCeeEEEeeecccccCCCCc
Q 043900 636 ANEIGVGSFGSVYKGILDQG-------KTTVAVKVFNLLHHGAFKSFIAECNTLKNIR-HRNLVKILTACSGVDYQGNDF 707 (953)
Q Consensus 636 ~~~ig~G~~g~Vy~~~~~~~-------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 707 (953)
.+.+..|-...+|+.....+ ++.|++|+....... .-...+|..+++.+. +.-..++++.+ .
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-~idR~~E~~~l~~L~~~gi~P~l~~~~---------~ 144 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-FYDSKVELDVFRYLSNINIAPNIIADF---------P 144 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C-CCCHHHHHHHHHHHHHTTSSCCEEEEE---------T
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch-hcCHHHHHHHHHHHHhcCCCCCEEEEc---------C
Confidence 45677888899999998631 357999987543221 122356788777773 33344555542 1
Q ss_pred eeEEEeeccCCch
Q 043900 708 KALVFEFMQNRSL 720 (953)
Q Consensus 708 ~~lv~e~~~~g~L 720 (953)
-+.||||++|.++
T Consensus 145 ~~~I~efI~G~~l 157 (424)
T 3mes_A 145 EGRIEEFIDGEPL 157 (424)
T ss_dssp TEEEEECCCSEEC
T ss_pred CCEEEEEeCCccC
Confidence 2689999998765
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=93.98 E-value=0.17 Score=55.62 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.3
Q ss_pred CeEeecCCCCCeEe------cCCCcEEEecccccee
Q 043900 766 PITHCDLKPSNVLL------DEEMMAHVSDFGLARF 795 (953)
Q Consensus 766 ~ivH~Dlkp~NIll------~~~~~~kL~DfG~a~~ 795 (953)
.++|+|+.+.||++ +++..++++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46799999999999 4566899999998864
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.75 E-value=0.05 Score=37.52 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 043900 579 LALAIISGLTGLSLALSFLILCLVRKRKE 607 (953)
Q Consensus 579 ~~~~ii~~~~~~~~~~~~~~~~~~~~r~~ 607 (953)
++.++++|++++++++...+ +++|+|+.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~-~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIG-LFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHH-HHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHH-HHhhhhHh
Confidence 44555666665554444433 44444443
No 449
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.56 E-value=0.11 Score=35.82 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 043900 579 LALAIISGLTGLSLALSFLILCLVRKR 605 (953)
Q Consensus 579 ~~~~ii~~~~~~~~~~~~~~~~~~~~r 605 (953)
++.++++|++++++++...+++++||+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 555566666655555544444443333
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=91.00 E-value=0.47 Score=32.56 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhhhccc
Q 043900 591 SLALSFLILCLVRKRKE 607 (953)
Q Consensus 591 ~~~~~~~~~~~~~~r~~ 607 (953)
+++++++++++.|||+.
T Consensus 24 ~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 24 VVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhheehhhh
Confidence 33334444444444443
No 451
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=83.15 E-value=1.5 Score=29.31 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 043900 581 LAIISGLTGLSLALSFLILCLVRK 604 (953)
Q Consensus 581 ~~ii~~~~~~~~~~~~~~~~~~~~ 604 (953)
+++++|.++.+++++.+.++++||
T Consensus 14 AGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeehHHHHHHHHHHHHHHHHeec
Confidence 444444444333333333444443
No 452
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=82.54 E-value=2.1 Score=41.52 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=63.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhCCCCCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCccccccccccccccccc
Q 043900 739 SLNLLQRLNIGIDVACALSYLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAPE 818 (953)
Q Consensus 739 ~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE 818 (953)
..+...+++++.+|+....+++.. +|--+.|+||+++.++.+++.-.|.-..++ |.
T Consensus 77 ~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik~~l~-------------------P~ 132 (215)
T 4ann_A 77 SFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQNVVD-------------------PL 132 (215)
T ss_dssp GSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEETTTBS-------------------CC
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCccCCC-------------------CC
Confidence 578899999999999988777754 788999999999999999999887654332 11
Q ss_pred ccCCCCCCcccchHHHHHHHHHHHhCCCCCCCc
Q 043900 819 YGLGSEVSINGDVYSYGILLLELVTRKKPVDSM 851 (953)
Q Consensus 819 ~~~~~~~~~~sDv~slG~vl~elltg~~pf~~~ 851 (953)
..+...=.-.+=|++..+++++..|+..
T Consensus 133 -----~~~ee~fL~qyKAliiall~~K~~Fe~l 160 (215)
T 4ann_A 133 -----PVSEAEFLTRYKALVICAFNEKQSFDAL 160 (215)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 1122222345678889999999988653
No 453
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=78.56 E-value=3.2 Score=40.43 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=60.6
Q ss_pred ccCHHHHHHHHHHHHHHHH-HHhhCCCCCeEeecCCCCCeEecCCCcEEEeccccceecCCCCCcccccccccccccccc
Q 043900 739 SLNLLQRLNIGIDVACALS-YLHHDCQPPITHCDLKPSNVLLDEEMMAHVSDFGLARFLPLSPAQTSSIDAKGSIGYIAP 817 (953)
Q Consensus 739 ~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~gt~~y~aP 817 (953)
.++..++++++.+|+.... +++.. +|--+.|+||+++.++.+++.-.|.-..+ +|
T Consensus 81 ~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~NL~f~~~~~p~i~hRGi~~~l-------------------pP 136 (219)
T 4ano_A 81 KTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPENLMFNRALEPFFLHVGVKESL-------------------PP 136 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGGEEECTTCCEEESCCEETTTB-------------------SS
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCceEEEeCCCcEEEEEcCCcccC-------------------CC
Confidence 5788999999999999888 77654 78889999999999999999988865432 22
Q ss_pred cccCCCCCCcccchHHHHHHHHHHHhCCCCCCC
Q 043900 818 EYGLGSEVSINGDVYSYGILLLELVTRKKPVDS 850 (953)
Q Consensus 818 E~~~~~~~~~~sDv~slG~vl~elltg~~pf~~ 850 (953)
.- .+..-=.-.+=|++..++.++..|+.
T Consensus 137 ~e-----~~ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 137 DE-----WDDERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp CS-----CCHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred CC-----CCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 11 11111223566788888888877653
No 454
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=76.10 E-value=0.29 Score=54.77 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=17.6
Q ss_pred ccCcccccceeeEEEEEEcCCCeEEEE------EEeec--cchhhHHHHHHHHHHHhhcCCCCeeEEEeeec
Q 043900 635 SANEIGVGSFGSVYKGILDQGKTTVAV------KVFNL--LHHGAFKSFIAECNTLKNIRHRNLVKILTACS 698 (953)
Q Consensus 635 ~~~~ig~G~~g~Vy~~~~~~~~~~vav------K~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~ 698 (953)
..+.+| ||.||+|.+.....+||| |..+. ...+....+.+|..+++.++|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 456676 999999999775567888 76643 12233456888999999999999999887743
No 455
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=71.84 E-value=5 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 043900 581 LAIISGLTGLSLALSFLILCLVRK 604 (953)
Q Consensus 581 ~~ii~~~~~~~~~~~~~~~~~~~~ 604 (953)
+-+|+|+++++..+++.+|.+..-
T Consensus 6 weviaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888876443
No 456
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=69.53 E-value=8.9 Score=24.21 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 043900 578 KLALAIISGLTGLSLALSFLILCLVRKR 605 (953)
Q Consensus 578 ~~~~~ii~~~~~~~~~~~~~~~~~~~~r 605 (953)
.++..+++|++++++++.--+++|+.+|
T Consensus 7 ~malt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 7 TMALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCceeEEEcccc
Confidence 3556667777766666655566665544
No 457
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=64.96 E-value=15 Score=26.51 Aligned_cols=31 Identities=26% Similarity=0.113 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 043900 577 LKLALAIISGLTGLSLALSFLILCLVRKRKE 607 (953)
Q Consensus 577 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~r~~ 607 (953)
+.+++++++|++.+.++++.+.-|=..||++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3444555555554444444433332334443
No 458
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=58.60 E-value=27 Score=25.25 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043900 577 LKLALAIISGLTGLSLALSFLI 598 (953)
Q Consensus 577 ~~~~~~ii~~~~~~~~~~~~~~ 598 (953)
+.+++++++|++.+.++++.+.
T Consensus 13 wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444333
No 459
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.24 E-value=23 Score=29.56 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=26.4
Q ss_pred CccCcCCCccCCCCCCCcEEeCCCCccccccCcCccCCCCCcEEeccC
Q 043900 38 NSFNHGIPSEFDRLQRLQVLALNNNSIGGEIPANISSCSNLIQIRLFY 85 (953)
Q Consensus 38 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 85 (953)
..++.+-..+|.++.+|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455555566666666666666554 3334455566666666655544
No 460
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=56.16 E-value=19 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 043900 583 IISGLTGLSLALSFLILCLV 602 (953)
Q Consensus 583 ii~~~~~~~~~~~~~~~~~~ 602 (953)
+++|++++++++.+.++|..
T Consensus 13 vlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhh
Confidence 45555666666666665433
No 461
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=53.38 E-value=9 Score=25.93 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 043900 581 LAIISGLT 588 (953)
Q Consensus 581 ~~ii~~~~ 588 (953)
.++++|++
T Consensus 17 ~~vv~Gv~ 24 (41)
T 2k9y_A 17 GGVAVGVV 24 (41)
T ss_dssp HHHHHHHH
T ss_pred eehhHHHH
Confidence 33333443
No 462
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=51.36 E-value=26 Score=24.08 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=18.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhhhhccccCCC
Q 043900 581 LAIISGLTG-LSLALSFLILCLVRKRKEKKNP 611 (953)
Q Consensus 581 ~~ii~~~~~-~~~~~~~~~~~~~~~r~~~~~~ 611 (953)
.+|++|+++ ++++++++...++..|+++...
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 556677776 4444455555666777766543
No 463
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.97 E-value=26 Score=24.09 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 043900 587 LTGLSLALSFLILCLVRKRKE 607 (953)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~r~~ 607 (953)
+++++.++.++++--++..++
T Consensus 23 l~vi~~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHhheehhhhhcc
Confidence 444455555555555544443
No 464
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.25 E-value=50 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.1
Q ss_pred CcccCCCCccccCCCccceeeecCCcccccCCCCccCCccccEEEccCc
Q 043900 429 NQLTGSIPSEVGNLKNLEVLDVFENKLKGEIPSTLGSCKKLEQLEMQGN 477 (953)
Q Consensus 429 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 477 (953)
..++.+-..+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566678888888888888765 44466677888888888877654
No 465
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=40.19 E-value=41 Score=22.88 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 043900 578 KLALAIISGLTGLS 591 (953)
Q Consensus 578 ~~~~~ii~~~~~~~ 591 (953)
.+++++++|+..+.
T Consensus 12 iIi~s~l~GLllL~ 25 (42)
T 2k1a_A 12 WVLVGVLGGLLLLT 25 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 466
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.34 E-value=24 Score=27.94 Aligned_cols=7 Identities=0% Similarity=0.434 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 043900 582 AIISGLT 588 (953)
Q Consensus 582 ~ii~~~~ 588 (953)
++++|++
T Consensus 16 gvi~gil 22 (79)
T 2knc_B 16 SVMGAIL 22 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343433
No 467
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.74 E-value=24 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccc
Q 043900 583 IISGLTGLSLALSFLILCLVRKRKEK 608 (953)
Q Consensus 583 ii~~~~~~~~~~~~~~~~~~~~r~~~ 608 (953)
|++|+++.+++++++...++...+++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333334444444443
No 468
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=35.06 E-value=51 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043900 580 ALAIISGLTGLSLALSFLILCL 601 (953)
Q Consensus 580 ~~~ii~~~~~~~~~~~~~~~~~ 601 (953)
+++++.+-+++.++++++++|+
T Consensus 9 IaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 9 LAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeEeHHHHHHHHHHHHHHhhe
Confidence 3444545555555555555554
No 469
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=34.98 E-value=2e+02 Score=29.84 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=72.7
Q ss_pred cccCcccccceeeEEEEEEcCCCeEEEEEEeeccchhhHHHHHHHHHHHhhcCCCCeeEEEeeecc-------------c
Q 043900 634 ASANEIGVGSFGSVYKGILDQGKTTVAVKVFNLLHHGAFKSFIAECNTLKNIRHRNLVKILTACSG-------------V 700 (953)
Q Consensus 634 ~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-------------~ 700 (953)
..++....|..| ||.+... +..|+||-.. .-..+.+..++...-.+..|... ++.+... .
T Consensus 72 ~~I~~s~~Gstg-vff~~td--~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~R-iv~~~~~E~~e~~~~L~~~~~ 144 (342)
T 1cja_A 72 KGIERSEKGTEG-LFFVETE--SGVFIVKRST---NIESETFCSLLCMRLGLHAPKVR-VVSSNSEEGTNMLECLAAIDK 144 (342)
T ss_dssp EEEEECCSTTSC-EEEEEES--SCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEE-EEESSSHHHHHHHHHHHHHCS
T ss_pred eEEEeccCCCCC-eEEEEeC--CCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCee-EEeeCcHHHHHHHHHHHHhhh
Confidence 344555666654 5544443 3378899441 22334444555555556677643 3332200 0
Q ss_pred -----ccCCCCceeEEEeeccCCchhhccccCCcCCcccCCccccCHHHHHHHHHHH--HHHHHHHhhCC-CCCeEe-ec
Q 043900 701 -----DYQGNDFKALVFEFMQNRSLEEWLHPITREDKTEEAPRSLNLLQRLNIGIDV--ACALSYLHHDC-QPPITH-CD 771 (953)
Q Consensus 701 -----~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i--~~~L~~LH~~~-~~~ivH-~D 771 (953)
.........++|||.+|..|.+.-..... ..+... .+.++ +-+++.+..+. +.+.+. .-
T Consensus 145 ~~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~--------~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~ 212 (342)
T 1cja_A 145 SFRVITTLANQANILLMELVRGITLNKLTTTSAP--------EVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNE 212 (342)
T ss_dssp SSCHHHHHTTCSEEEEEECCCEEESTTCCSSSHH--------HHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSC
T ss_pred hhHHHHHhhcccceehhhhcCCCccccchhhhhh--------hhcCHH----HHHhhchhheehhhhcCCccCcccccCC
Confidence 00011245699999998776654321100 112222 22332 23455555542 222211 22
Q ss_pred CCCCCeEecCCC-cEEEecccccee
Q 043900 772 LKPSNVLLDEEM-MAHVSDFGLARF 795 (953)
Q Consensus 772 lkp~NIll~~~~-~~kL~DfG~a~~ 795 (953)
=.++|||+++++ .+.++|-+.+..
T Consensus 213 GN~~NIL~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 213 GNLDNIMLSERGATVVPIDSKIIPL 237 (342)
T ss_dssp CCGGGEEEESBTTCEEECSCCCCCC
T ss_pred CChhheEEeCCCCeEEEEcCCcccc
Confidence 578999998655 488999998864
No 470
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=31.07 E-value=85 Score=20.67 Aligned_cols=7 Identities=29% Similarity=1.004 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 043900 583 IISGLTG 589 (953)
Q Consensus 583 ii~~~~~ 589 (953)
+.+|+++
T Consensus 19 vmaGiIG 25 (40)
T 1afo_A 19 VMAGVIG 25 (40)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 471
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=29.06 E-value=67 Score=21.98 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043900 581 LAIISGLTGLSLALSFLI 598 (953)
Q Consensus 581 ~~ii~~~~~~~~~~~~~~ 598 (953)
.+++.|+++.++++.++.
T Consensus 10 ~~Iv~gvi~~ivliGl~l 27 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAA 27 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 455666666555554433
No 472
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=24.39 E-value=1.6e+02 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.9
Q ss_pred HHHHHHhhhhh
Q 043900 594 LSFLILCLVRK 604 (953)
Q Consensus 594 ~~~~~~~~~~~ 604 (953)
+++..||+.|-
T Consensus 30 li~gcwcylrl 40 (90)
T 1zza_A 30 LILGCWCYLRL 40 (90)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHHHH
Confidence 33444554443
Done!