BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043901
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ ++ + TPL LAA +G+++ ++ +A + + NG T LH A + +
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLE---VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILA 170
++ A D VN+ ++NG T LH+ A
Sbjct: 85 KLLLEAGAD-VNAKDKNGRTPLHLAA 109
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 68 LGNEAMCHCTASKDREL---------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
LG + + A +D E+ ++ ++ D TPL LAA G+++ L +A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAG 58
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170
+ + +G T LH A + I +++A D VN+ +++G T LH+ A
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 68 LGNEAMCHCTASKDREL---------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
LG + + A +D E+ ++ ++ D TPL LAA G+++ L +A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAG 58
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170
+ + +G T LH A + I +++A D VN+ +++G T LH+ A
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 68 LGNEAMCHCTASKDREL---------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
LG + + A +D E+ ++ ++ D TPL LAA G+++ L +A
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAG 70
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170
+ + +G T LH A + I +++A D VN+ +++G T LH+ A
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 121
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRA 150
+ TPL LAA +G+++ ++ +A + + NG T LH A + + ++ A
Sbjct: 1 NGRTPLHLAARNGHLEV---VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 151 YPDLVNSVNENGLTRLHILA 170
D VN+ ++NG T LH+ A
Sbjct: 58 GAD-VNAKDKNGRTPLHLAA 76
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 68 LGNEAMCHCTASKDREL---------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
LG + + A +D E+ ++ ++ TPL LAA G+ + L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA-- 71
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172
+ R +G T LH A + I +++ Y VN+ + GLT LH+ A +
Sbjct: 72 -DVNARDTDGWTPLHLAADNGHLEI-VEVLLKYGADVNAQDAYGLTPLHLAADR 123
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 93 ETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR--A 150
TPL +AA G+++ L L + + ++ C G T LH A +A ++ A
Sbjct: 114 HTPLHIAAREGHVETVLALL---EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 151 YPDLVNSVNENGLTRLHI 168
+P N+ +NGLT LH+
Sbjct: 171 HP---NAAGKNGLTPLHV 185
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 88 RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQI 147
RN D PL LA G+ CL N AK N+ + +G T L A SG + + +
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNK--KDLSGNTPLIYACSGGHHELVALL 171
Query: 148 MRAYPDLVNSVNENGLTRLH 167
++ + +N+ N G T LH
Sbjct: 172 LQ-HGASINASNNKGNTALH 190
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 93 ETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYP 152
E+PL LAA ++ A L F + ++ R GET LH A + A +M A P
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 153 DLV----NSVNENGLTRLHI 168
+LV S G T LHI
Sbjct: 62 ELVFEPMTSELYEGQTALHI 81
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ ++D +TPL LAA +G+ + L +Q D + ++G+T LH A + +
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLL--LSQGAD-PNAKDSDGKTPLHLAAENGHKEVV 86
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILA 170
++ D N+ + +G T LH+ A
Sbjct: 87 KLLLSQGAD-PNAKDSDGKTPLHLAA 111
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 68 LGNEAMCHCTASKDREL---------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
LG + + A +D E+ ++ +N TPL LAA G+++ L
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170
D G T LH A + I +++ D VN+++ +G+T LH+ A
Sbjct: 74 DASDVF---GYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAA 121
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ +ND TPL LAA +G+++ L N A N G T LH A + + I
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVN--ASDLTGITPLHLAAATGHLEIV 96
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILA 170
+++ D VN+ + +G T LH+ A
Sbjct: 97 EVLLKHGAD-VNAYDNDGHTPLHLAA 121
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 95 PLFL---AALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAY 151
PL L AAL G ++ + ++ + D Q G T LH+AI G +SI ++ A
Sbjct: 21 PLVLLLDAALTGELE--VVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAG 77
Query: 152 PDLVNSVNENGLTRLHILAS 171
+ VNS + +G T LH AS
Sbjct: 78 AN-VNSPDSHGWTPLHCAAS 96
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY 140
D+ L + + DS T L A G+ + L +++ + G + LH A S
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD---DAGWSPLHIAASAGX 85
Query: 141 FSI--AFQIMRAYPDLVNSVNENGLTRLHILASK 172
I A + A+ VN+VN+NG T LH ASK
Sbjct: 86 DEIVKALLVKGAH---VNAVNQNGCTPLHYAASK 116
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 266 LKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
LK KD Q+ R ET + +AA+ G E K +LD F
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 214
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 266 LKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
LK KD Q+ R ET + +AA+ G E K +LD F
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 68 LGNEAMCHCTASKDREL---------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
LG + + A +D E+ ++ ++ +TPL LAA+ G+++ L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL--LKHGA 71
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILAS 171
D K G+T LH A + I +++ D VN+ + G T LH+ A
Sbjct: 72 DVNAADK-MGDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAAD 122
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 76 CTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135
CT ++ N + T L LA++HG + L S A N Q NG T LH A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQ-EPCNGRTALHLA 158
Query: 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195
+ + + +++ D VN V G + + +P+ + +LG + +
Sbjct: 159 VDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPST-RIQQQLGQL--TLENLQML 214
Query: 196 GEANDEES 203
E+ DEES
Sbjct: 215 PESEDEES 222
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 266 LKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
LK KD Q+ R ET + +AA+ G E K +LD F
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 93 ETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIM 148
ET L LAA + DA + +A + + N G T LH+A+S + + FQI+
Sbjct: 58 ETALHLAARYSRSDAA---KRLLEASADANIQDNMGRTPLHAAVSADAQGV-FQIL 109
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 266 LKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
LK KD Q+ R ET + +AA+ G E K +LD F
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY 140
D+ L + + DS T L A G+ + L +++ + G + LH A S
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD---DAGWSPLHIAASAGR 85
Query: 141 FSI--AFQIMRAYPDLVNSVNENGLTRLHILASK 172
I A + A+ VN+VN+NG T LH ASK
Sbjct: 86 DEIVKALLVKGAH---VNAVNQNGCTPLHYAASK 116
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY 140
D+ L + + DS T L A G+ + L +++ + G + LH A S
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD---DAGWSPLHIAASAGR 85
Query: 141 FSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172
I ++ VN+VN+NG T LH ASK
Sbjct: 86 DEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK 116
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 76 CTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135
CT ++ N + T L LA++HG + L S A N Q NG T LH A
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQ-EPCNGRTALHLA 155
Query: 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTA 175
+ + + +++ D VN V G + + +P+
Sbjct: 156 VDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPST 194
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY 140
D+ L + + DS T L A G+ + L +++ + G + LH A S
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD---DAGWSPLHIAASAGR 86
Query: 141 FSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172
I ++ VN+VN+NG T LH ASK
Sbjct: 87 DEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK 117
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 94 TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD 153
TPL LAA G+++ L N A N G T LH A + I +++ D
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK-NGADVN--AYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 154 LVNSVNENGLTRLHILASK 172
VN+ ++NG+T LH+ A++
Sbjct: 106 -VNAKDDNGITPLHLAANR 123
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331
R +T +++A + +V+++L+ + + D DS+ K +LLAVE + I +L
Sbjct: 238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 291
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 128 GETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILAS 171
G T LH A + + I ++R D VN+V+ NG T LH+ AS
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAAS 77
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331
R +T +++A + +V+++L+ + + D DS+ K +LLAVE + I +L
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 266 LKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
LK KD Q+ + ET + +AA+ G E K +LD F
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 178
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 266 LKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
LK KD Q+ + ET + +AA+ G E K +LD F
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 104
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ +N TPL LAA+ G+++ L D G T LH A + I
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY---GFTPLHLAAMTGHLEI- 95
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASK 172
+++ Y VN+ + G T LH+ A +
Sbjct: 96 VEVLLKYGADVNAFDMTGSTPLHLAADE 123
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 272 KDQQSGRNETAILIAAKMGVAEMVKKILDTF 302
+D Q ++ET + +AA+ G E K +LD F
Sbjct: 177 RDAQDDKDETPLFLAAREGSYEASKALLDNF 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,967,713
Number of Sequences: 62578
Number of extensions: 349127
Number of successful extensions: 790
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 75
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)