Query 043901
Match_columns 331
No_of_seqs 168 out of 2481
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.3E-40 8E-45 303.1 25.0 191 2-207 14-218 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.2E-40 1.1E-44 302.2 25.9 296 3-331 48-362 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 4.5E-39 1.6E-43 277.2 23.8 254 2-331 5-271 (285)
4 4b93_B Ankyrin repeat domain-c 100.0 5.3E-40 1.8E-44 281.3 16.9 218 2-325 11-230 (269)
5 3aji_A 26S proteasome non-ATPa 100.0 2.4E-39 8.2E-44 271.0 18.8 216 3-331 7-223 (231)
6 1yyh_A HN1;, notch 1, ankyrin 100.0 1.4E-39 4.6E-44 276.6 16.8 229 2-331 10-241 (253)
7 2dzn_A Probable 26S proteasome 100.0 1.2E-38 4.2E-43 266.1 19.1 216 1-328 1-223 (228)
8 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-38 4.7E-43 267.9 18.5 220 2-331 9-234 (241)
9 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-38 4.6E-43 275.1 18.5 250 3-330 16-270 (285)
10 2xai_A ASB-9, ankyrin repeat a 100.0 6.3E-38 2.2E-42 267.5 20.3 208 2-325 3-211 (261)
11 3b7b_A Euchromatic histone-lys 100.0 1E-37 3.6E-42 262.1 20.3 211 3-327 12-224 (237)
12 1oy3_D Transcription factor in 100.0 8E-38 2.7E-42 269.4 20.0 217 2-326 9-271 (282)
13 3utm_A Tankyrase-1; tankyrase, 100.0 5E-37 1.7E-41 272.4 22.7 238 3-322 25-322 (351)
14 2f8y_A Notch homolog 1, transl 100.0 1.4E-37 4.7E-42 258.9 17.9 201 40-331 6-209 (223)
15 2fo1_E LIN-12 protein; beta-ba 100.0 6.5E-38 2.2E-42 281.1 16.2 233 3-331 95-364 (373)
16 3ljn_A Hypothetical protein; a 100.0 2.2E-37 7.5E-42 276.8 18.6 218 3-331 21-262 (364)
17 4g8k_A 2-5A-dependent ribonucl 100.0 1.3E-36 4.3E-41 269.0 22.4 274 3-331 26-319 (337)
18 3eu9_A Huntingtin-interacting 100.0 1.4E-36 4.9E-41 255.1 20.8 217 3-331 10-228 (240)
19 1oy3_D Transcription factor in 100.0 3.8E-37 1.3E-41 265.1 16.8 192 52-331 2-243 (282)
20 3kea_A K1L; tropism, ANK repea 100.0 1.2E-36 4.1E-41 262.9 15.8 186 52-330 24-212 (285)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-36 4.2E-41 258.3 15.0 192 52-331 3-208 (253)
22 3hra_A Ankyrin repeat family p 100.0 1.1E-35 3.7E-40 243.5 18.7 189 56-331 3-196 (201)
23 3b7b_A Euchromatic histone-lys 100.0 1.1E-35 3.8E-40 249.7 18.8 190 52-330 4-194 (237)
24 1s70_B 130 kDa myosin-binding 100.0 1.7E-36 5.8E-41 263.5 13.6 208 4-324 42-276 (299)
25 1k1a_A B-cell lymphoma 3-encod 100.0 2.4E-35 8.2E-40 248.1 18.6 186 56-330 7-200 (241)
26 2rfa_A Transient receptor pote 100.0 2E-35 7E-40 247.3 17.6 188 57-331 2-215 (232)
27 2xai_A ASB-9, ankyrin repeat a 100.0 1.6E-35 5.5E-40 252.6 17.1 183 57-331 2-184 (261)
28 1s70_B 130 kDa myosin-binding 100.0 2.3E-35 7.7E-40 256.4 17.5 247 8-331 4-250 (299)
29 2dzn_A Probable 26S proteasome 100.0 3.4E-35 1.2E-39 245.2 17.7 187 58-330 2-191 (228)
30 3utm_A Tankyrase-1; tankyrase, 100.0 2.6E-35 9E-40 261.3 18.0 248 56-331 22-298 (351)
31 1wdy_A 2-5A-dependent ribonucl 100.0 9.1E-35 3.1E-39 250.3 19.9 213 57-330 4-236 (285)
32 4g8k_A 2-5A-dependent ribonucl 100.0 2.1E-34 7.2E-39 254.8 22.6 241 3-309 60-330 (337)
33 3d9h_A CDNA FLJ77766, highly s 100.0 8.3E-35 2.8E-39 251.4 17.6 214 56-331 13-240 (285)
34 3aji_A 26S proteasome non-ATPa 100.0 1.4E-34 4.7E-39 242.1 18.2 186 57-331 5-190 (231)
35 1ikn_D Protein (I-kappa-B-alph 100.0 5.3E-36 1.8E-40 251.7 9.5 187 56-330 6-201 (236)
36 2fo1_E LIN-12 protein; beta-ba 100.0 6.7E-36 2.3E-40 268.0 9.7 239 6-331 70-331 (373)
37 2etb_A Transient receptor pote 100.0 4E-35 1.4E-39 249.4 11.6 188 57-331 1-239 (256)
38 4gpm_A Engineered protein OR26 100.0 6E-34 2E-38 226.2 17.2 159 60-308 6-164 (169)
39 3kea_A K1L; tropism, ANK repea 100.0 4E-34 1.4E-38 247.1 15.5 219 9-330 6-238 (285)
40 2rfa_A Transient receptor pote 100.0 2.1E-33 7.1E-38 235.1 19.4 203 2-310 3-227 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 8.1E-35 2.8E-39 244.5 8.3 215 3-324 9-230 (236)
42 4b93_B Ankyrin repeat domain-c 100.0 3.5E-34 1.2E-38 245.1 10.7 187 56-331 9-203 (269)
43 3hra_A Ankyrin repeat family p 100.0 2.6E-32 8.9E-37 223.3 20.4 193 2-300 5-199 (201)
44 3ljn_A Hypothetical protein; a 100.0 1.4E-33 4.8E-38 252.1 13.5 184 56-331 18-229 (364)
45 2f8y_A Notch homolog 1, transl 100.0 3.6E-32 1.2E-36 226.1 21.1 191 3-306 26-217 (223)
46 2etb_A Transient receptor pote 100.0 1.6E-33 5.6E-38 239.4 13.2 204 1-307 1-248 (256)
47 1sw6_A Regulatory protein SWI6 100.0 8.2E-34 2.8E-38 249.9 11.5 219 60-324 99-327 (327)
48 4gpm_A Engineered protein OR26 100.0 1.7E-32 5.8E-37 217.9 17.4 157 4-196 6-163 (169)
49 2pnn_A Transient receptor pote 100.0 8.7E-34 3E-38 243.4 10.2 189 56-331 11-251 (273)
50 2pnn_A Transient receptor pote 100.0 3.9E-33 1.4E-37 239.3 13.7 226 2-318 13-272 (273)
51 3jxi_A Vanilloid receptor-rela 100.0 2.8E-33 9.6E-38 238.4 10.5 189 56-331 3-243 (260)
52 3v30_A DNA-binding protein rfx 100.0 3.3E-32 1.1E-36 217.3 15.6 170 58-316 2-171 (172)
53 3jxi_A Vanilloid receptor-rela 100.0 2.4E-32 8.3E-37 232.6 13.5 211 1-306 4-251 (260)
54 4hbd_A KN motif and ankyrin re 100.0 1.4E-32 4.9E-37 236.2 11.6 187 57-331 75-268 (276)
55 2vge_A RELA-associated inhibit 100.0 5.6E-34 1.9E-38 238.1 1.3 195 43-330 4-205 (229)
56 3eu9_A Huntingtin-interacting 100.0 1.8E-31 6.3E-36 223.9 16.5 185 56-330 7-194 (240)
57 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.5E-31 8.5E-36 209.9 14.4 159 57-305 4-162 (162)
58 3v31_A Ankyrin repeat family A 100.0 1.3E-30 4.3E-35 207.0 16.2 160 57-306 2-161 (167)
59 2rfm_A Putative ankyrin repeat 100.0 4.6E-31 1.6E-35 214.5 13.9 129 52-192 28-157 (192)
60 2rfm_A Putative ankyrin repeat 100.0 8.1E-31 2.8E-35 213.0 14.7 99 85-194 28-126 (192)
61 4hbd_A KN motif and ankyrin re 100.0 2.8E-31 9.6E-36 228.1 11.9 164 52-303 104-274 (276)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 4.7E-30 1.6E-34 204.2 16.2 156 56-300 12-167 (169)
63 3f6q_A Integrin-linked protein 100.0 4.6E-30 1.6E-34 206.2 14.9 168 57-313 4-171 (179)
64 3v31_A Ankyrin repeat family A 100.0 8.5E-30 2.9E-34 202.2 14.3 151 91-330 2-152 (167)
65 1awc_B Protein (GA binding pro 100.0 2.1E-29 7E-34 197.1 14.8 124 58-194 2-125 (153)
66 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.3E-29 7.7E-34 197.4 14.1 154 58-301 2-155 (156)
67 3v30_A DNA-binding protein rfx 100.0 4.5E-29 1.5E-33 199.0 16.0 161 2-197 2-163 (172)
68 1ihb_A P18-INK4C(INK6), cyclin 100.0 7.9E-29 2.7E-33 195.5 16.5 155 3-193 6-161 (162)
69 3twr_A Tankyrase-2; ankyrin re 100.0 2.4E-29 8.2E-34 199.2 12.0 159 56-304 6-164 (165)
70 2y1l_E Darpin-8.4; hydrolase-i 100.0 3E-28 1E-32 193.8 17.4 153 3-191 15-168 (169)
71 1awc_B Protein (GA binding pro 100.0 3.2E-28 1.1E-32 190.3 16.7 149 4-188 4-152 (153)
72 1ycs_B 53BP2, P53BP2; ankyrin 100.0 5.9E-30 2E-34 215.3 6.4 179 56-325 3-193 (239)
73 2aja_A Ankyrin repeat family p 100.0 4.2E-30 1.4E-34 228.9 5.8 226 56-331 126-367 (376)
74 3f6q_A Integrin-linked protein 100.0 4.6E-28 1.6E-32 194.5 15.5 160 3-197 6-166 (179)
75 1sw6_A Regulatory protein SWI6 100.0 2.2E-29 7.5E-34 221.6 7.9 230 40-331 34-301 (327)
76 3twr_A Tankyrase-2; ankyrin re 100.0 5.9E-28 2E-32 191.2 15.1 154 3-192 9-163 (165)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.5E-27 5.1E-32 187.0 16.7 152 3-191 3-155 (156)
78 2vge_A RELA-associated inhibit 100.0 2E-30 7E-35 216.5 -2.4 142 3-173 22-167 (229)
79 3t8k_A Uncharacterized protein 99.9 1.3E-27 4.3E-32 192.8 10.7 155 3-194 7-179 (186)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.3E-29 2.8E-33 208.2 2.5 159 2-196 5-166 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 4.4E-27 1.5E-31 180.1 10.5 130 52-194 5-136 (136)
82 3t8k_A Uncharacterized protein 99.9 3.7E-27 1.3E-31 190.1 9.4 166 58-310 6-184 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 9.4E-27 3.2E-31 182.6 9.5 141 56-320 10-151 (156)
84 2aja_A Ankyrin repeat family p 99.9 1.1E-28 3.7E-33 219.9 -3.2 176 57-330 91-271 (376)
85 3ui2_A Signal recognition part 99.9 3.5E-26 1.2E-30 192.8 12.1 112 56-173 43-155 (244)
86 1d9s_A Cyclin-dependent kinase 99.9 3.6E-26 1.2E-30 174.9 11.1 132 84-305 4-136 (136)
87 3deo_A Signal recognition part 99.9 3.7E-26 1.3E-30 184.1 11.5 113 56-174 42-155 (183)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 5.6E-26 1.9E-30 173.9 11.8 125 56-192 12-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-25 4.3E-30 169.1 13.6 125 57-193 1-125 (126)
90 1bi7_B P16INK4A, MTS1, multipl 99.9 4E-25 1.4E-29 173.2 11.8 138 3-170 13-152 (156)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.9E-25 6.4E-30 171.2 8.1 114 56-174 8-121 (137)
92 3aaa_C Myotrophin, protein V-1 99.9 5E-25 1.7E-29 165.6 9.3 112 56-172 5-116 (123)
93 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-24 4.6E-29 166.4 9.6 84 87-174 5-88 (137)
94 2b0o_E UPLC1; arfgap, structur 99.9 5.4E-24 1.8E-28 184.7 14.3 126 56-193 149-283 (301)
95 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.9E-24 3.1E-28 158.9 13.6 126 91-305 1-126 (126)
96 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-23 4.8E-28 160.5 13.5 121 3-151 15-136 (136)
97 3deo_A Signal recognition part 99.9 2.1E-25 7.1E-30 179.7 3.0 120 64-195 6-136 (183)
98 2b0o_E UPLC1; arfgap, structur 99.9 5E-24 1.7E-28 184.9 11.3 142 3-174 152-298 (301)
99 3ui2_A Signal recognition part 99.9 2.5E-25 8.4E-30 187.5 2.9 135 56-206 13-149 (244)
100 3ehr_A Osteoclast-stimulating 99.9 6.8E-24 2.3E-28 176.1 9.0 129 56-196 71-200 (222)
101 3aaa_C Myotrophin, protein V-1 99.9 1.8E-23 6E-28 157.0 9.2 120 89-330 4-123 (123)
102 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.8E-23 1.6E-27 146.7 10.7 93 57-153 1-93 (93)
103 1dcq_A PYK2-associated protein 99.9 2.3E-22 7.8E-27 172.5 13.1 140 3-173 131-274 (278)
104 3ehr_A Osteoclast-stimulating 99.9 3.3E-23 1.1E-27 171.9 6.6 139 86-313 67-206 (222)
105 2l6b_A NR1C; ankyrin, consensu 99.9 1.9E-22 6.6E-27 149.4 8.1 106 56-166 7-112 (115)
106 3lvq_E ARF-GAP with SH3 domain 99.9 3.6E-21 1.2E-25 178.5 14.2 139 4-171 134-276 (497)
107 3jue_A Arfgap with coiled-coil 99.9 2.9E-21 9.8E-26 171.4 12.9 125 57-193 198-325 (368)
108 1dcq_A PYK2-associated protein 99.9 8.9E-21 3E-25 162.5 15.4 127 57-194 129-263 (278)
109 3lvq_E ARF-GAP with SH3 domain 99.8 7.5E-21 2.6E-25 176.3 12.5 130 56-197 130-268 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.2E-20 4.2E-25 134.1 10.6 92 91-193 1-92 (93)
111 3jue_A Arfgap with coiled-coil 99.8 2.7E-20 9.4E-25 165.1 13.3 143 4-173 201-348 (368)
112 2zgd_A 3 repeat synthetic anky 99.8 2.5E-19 8.4E-24 131.5 8.7 89 55-147 21-109 (110)
113 2l6b_A NR1C; ankyrin, consensu 99.8 5.9E-19 2E-23 130.5 8.4 100 87-197 4-103 (115)
114 2zgd_A 3 repeat synthetic anky 99.7 4.9E-18 1.7E-22 124.5 8.3 93 85-188 17-109 (110)
115 1gp8_A Protein (scaffolding pr 56.7 10 0.00034 20.6 2.5 19 4-22 15-33 (40)
116 3a7m_A Flagellar protein FLIT; 23.1 54 0.0018 23.3 2.6 21 4-24 19-39 (122)
117 3h3m_A Flagellar protein FLIT; 21.3 64 0.0022 23.0 2.7 21 4-24 32-52 (126)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-40 Score=303.11 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=151.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhcc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPL 68 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~ 68 (331)
+.++|+.|+..|+.+.++.|++.+.+.. .....+.|| +++ |++.+ .+ ++.+ ..|.||||+|+..
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~-~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNK-AK-VNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHT-CC-SSCCCTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CC-CCCCCCCCCCHHHHHHHC
Confidence 3578999999999999999998755432 222333565 888 88887 33 5556 8899999999999
Q ss_pred CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHH
Q 043901 69 GNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIM 148 (331)
Q Consensus 69 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll 148 (331)
|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+
T Consensus 91 g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ---ACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---cCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999887 8888888999999999999999999999888887 777888888888888888888888888
Q ss_pred HhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCccc
Q 043901 149 RAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECN 207 (331)
Q Consensus 149 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~ 207 (331)
++|++ ++..+..|.||||+|+..++ .++++.|+..+.+... ...+.+|++.
T Consensus 167 ~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 218 (437)
T 1n11_A 167 ERDAH-PNAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWNGYTPLHI 218 (437)
T ss_dssp HTTCC-TTCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred hCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence 88887 88888888888888888887 6777777777665543 3344555554
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-40 Score=302.19 Aligned_cols=296 Identities=17% Similarity=0.122 Sum_probs=249.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
..+|+.|+..|+.+.++.|++...... .....+.|| +++ |++.+ .+ .+.. ..|.||||+|+..|
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~-~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENN-AN-PNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CC-TTCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhCC-CC-CCCCCCCCCcHHHHHHHcC
Confidence 468999999999999999998766532 333444666 999 99998 44 4555 89999999999999
Q ss_pred CHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHH
Q 043901 70 NEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR 149 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~ 149 (331)
+.+++++|++.++. .+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus 125 ~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 200 (437)
T 1n11_A 125 HVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLP 200 (437)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred CHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999987 8889999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 150 AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 150 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.|++ ++..+..|.||||+|+..++ .++++.|+..+.+... +..+.+|++. ++..+
T Consensus 201 ~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~~~g~t~L~~---A~~~g------------- 256 (437)
T 1n11_A 201 RGGS-PHSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAESVQGVTPLHL---AAQEG------------- 256 (437)
T ss_dssp GTCC-SCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTCCCHHHH---HHHTT-------------
T ss_pred CCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCCCCCCCCCHHHH---HHHCC-------------
Confidence 9998 89999999999999999999 8999999998877654 4456677665 33222
Q ss_pred hHHHHHHHHHHhchhhhccCCcc-chhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCC
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKN-FKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFP 303 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 303 (331)
....+.++++......-..... -+++.++..+..+.+++|.+. +.++..|+||||+|+..|+.++|++|++ .|
T Consensus 257 -~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g 334 (437)
T 1n11_A 257 -HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQ 334 (437)
T ss_dssp -CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TT
T ss_pred -CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cC
Confidence 2355666665332222111111 157778888899999999876 6678899999999999999999999999 69
Q ss_pred ccccccccCCCcHHHHHHHcCccccccC
Q 043901 304 VAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 304 ~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++++.+|..|+||||+|+.+|+.++|++
T Consensus 335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~ 362 (437)
T 1n11_A 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTL 362 (437)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCChHHHHHH
Confidence 9999999999999999999999999873
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-39 Score=277.23 Aligned_cols=254 Identities=19% Similarity=0.197 Sum_probs=196.0
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+..+|+.|++.|+.+.++.+++.++.. .... ..|.||||+|+..|+.+++++|++.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANV-----------------------NFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCc-----------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 356899999999999999999886432 2222 6678888888888888888888888
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc--
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV-- 158 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~-- 158 (331)
|++ ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++..
T Consensus 62 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~ 136 (285)
T 1wdy_A 62 GAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRK 136 (285)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCC
T ss_pred CCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccc
Confidence 887 8888888888888888888888888888888887 88888888888888888888888888888877 6665
Q ss_pred --------cCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 159 --------NENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 159 --------~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
+..|.||||+|+..++ .++++.|+.. +.+... +..+.+|+|. ++..++..
T Consensus 137 ~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~~~~~~~~~~~~g~t~l~~---a~~~~~~~---------- 196 (285)
T 1wdy_A 137 TKEDQERLRKGGATALMDAAEKGH-------VEVLKILLDEMGADVNACDNMGRNALIH---ALLSSDDS---------- 196 (285)
T ss_dssp CCHHHHHTTCCCCCHHHHHHHHTC-------HHHHHHHHHTSCCCTTCCCTTSCCHHHH---HHHCSCTT----------
T ss_pred cHHHHHhhccCCCcHHHHHHHcCC-------HHHHHHHHHhcCCCCCccCCCCCCHHHH---HHHccccc----------
Confidence 6778888888888888 7888888876 555443 3445555554 22111110
Q ss_pred hHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccc
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQD 308 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 308 (331)
....++.++++. |.. . +.++..|.||||+|+..|+.+++++|++..|++++.
T Consensus 197 ~~~~i~~~Ll~~-----g~~-----------~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 197 DVEAITHLLLDH-----GAD-----------V------------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248 (285)
T ss_dssp THHHHHHHHHHT-----TCC-----------S------------SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred hHHHHHHHHHHc-----CCC-----------C------------CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc
Confidence 011222222221 100 0 556788999999999999999999999977999999
Q ss_pred cccCCCcHHHHHHHcCccccccC
Q 043901 309 MDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 309 ~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|..|+||||+|+++|+.+++++
T Consensus 249 ~~~~g~t~l~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 249 TDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred cCCCCCcHHHHHHHcCcHHHHHH
Confidence 99999999999999999999863
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=281.26 Aligned_cols=218 Identities=17% Similarity=0.134 Sum_probs=168.4
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCH-HHHHHHHh
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNE-AMCHCTAS 79 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~-~~v~~Ll~ 79 (331)
+.++|+.||..|+.+.|+.|++........ . ....+.. ..|.||||+|+..+.. .++++|++
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~---------------~-~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~ 74 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLED---------------A-EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCccccc---------------c-cccccccCccCCCHHHHHHHhCCHHHHHHHHHH
Confidence 357899999999999999999876542210 0 1224445 7889999999988775 58899999
Q ss_pred cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 80 KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 80 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
.|++ +|.+|.+|.||||+|+..|+.+++++|++.|+++ +.++..|.||+|+|+..++.+++++|++.|++ ++.+|
T Consensus 75 ~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d 149 (269)
T 4b93_B 75 SGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA---GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKD 149 (269)
T ss_dssp CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCC
T ss_pred CCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc---CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCC
Confidence 9998 9999999999999999999999999999999999 99999999999999999999999999999998 99999
Q ss_pred CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHH
Q 043901 160 ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMK 239 (331)
Q Consensus 160 ~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (331)
..|.||||+|+..|+ .++++.|+..+.++
T Consensus 150 ~~g~TpL~~A~~~g~-------~~~v~~Ll~~gadv-------------------------------------------- 178 (269)
T 4b93_B 150 LSGNTPLIYACSGGH-------HELVALLLQHGASI-------------------------------------------- 178 (269)
T ss_dssp TTCCCHHHHHHHTTC-------GGGHHHHHHTTCCT--------------------------------------------
T ss_pred CCCCCHHHHHHHCCC-------HHHHHHHHHCCCCC--------------------------------------------
Confidence 999999999999999 79999998877543
Q ss_pred hchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHH
Q 043901 240 ALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLL 319 (331)
Q Consensus 240 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~ 319 (331)
+.++..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+
T Consensus 179 ---------------------------------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~ 224 (269)
T 4b93_B 179 ---------------------------------NASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDC 224 (269)
T ss_dssp ---------------------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGG
T ss_pred ---------------------------------CccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHH
Confidence 3446689999999999999999999999 699999999999999999
Q ss_pred HHHcCc
Q 043901 320 AVENRQ 325 (331)
Q Consensus 320 A~~~~~ 325 (331)
|+++++
T Consensus 225 A~~~~~ 230 (269)
T 4b93_B 225 AEQNSK 230 (269)
T ss_dssp SCTTCH
T ss_pred HHhCCc
Confidence 998876
No 5
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.4e-39 Score=271.04 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=197.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
-.+|+.|+..|+.+.++.++...+. ..+.. ..|.||||+|+..|+.+++++|++.|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 63 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKS-----------------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGG-----------------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchh-----------------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC
Confidence 3679999999999999999988643 23445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++|++.|.+ ++.++..
T Consensus 64 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~ 138 (231)
T 3aji_A 64 VP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138 (231)
T ss_dssp CC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 88 9999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|.||||+|+..++ .++++.|+..+.+.
T Consensus 139 g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~---------------------------------------------- 165 (231)
T 3aji_A 139 DATAMHRAAAKGN-------LKMVHILLFYKAST---------------------------------------------- 165 (231)
T ss_dssp SCCHHHHHHHHTC-------HHHHHHHHHTTCCS----------------------------------------------
T ss_pred CCcHHHHHHHcCC-------HHHHHHHHhcCCCc----------------------------------------------
Confidence 9999999999998 79999988776542
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
+.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+++|+
T Consensus 166 -------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 166 -------------------------------NIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAK 213 (231)
T ss_dssp -------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSC
T ss_pred -------------------------------cccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH
Confidence 2346689999999999999999999999 69999999999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
+.++.+++++
T Consensus 214 ~~~~~~i~~l 223 (231)
T 3aji_A 214 GGLGLILKRL 223 (231)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999888763
No 6
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.4e-39 Score=276.59 Aligned_cols=229 Identities=18% Similarity=0.149 Sum_probs=175.8
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHh
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTAS 79 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~ 79 (331)
+..+||.|+..|+...+.. .....+...+++ |++.+ .++.... ..|.||||+|+..|+.+++++|++
T Consensus 10 g~tpL~~A~~~g~~~~~~~----------~~~~~~~~~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 78 (253)
T 1yyh_A 10 GFTPLMIASCSGGGLETGN----------SEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78 (253)
T ss_dssp -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHhccccccccc----------hhhcCCChHHHHHHHHcc-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 3578999999885321110 011122344677 77777 5555555 899999999999999999999999
Q ss_pred cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 80 KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ-AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 80 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
.|++ ++..|..|.||||+|+..|+.+++++|++.|+ ++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 79 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~ 153 (253)
T 1yyh_A 79 ASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---DARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAV 153 (253)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT---TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCB
T ss_pred cCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCc
Confidence 9998 99999999999999999999999999999988 55 89999999999999999999999999999998 9999
Q ss_pred cCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHH
Q 043901 159 NENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLM 238 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (331)
|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 154 d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~------------------------------------------- 183 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNN-------VDAAVVLLKNGANK------------------------------------------- 183 (253)
T ss_dssp CTTSCBHHHHHHHHTC-------HHHHHHHHHTTCCT-------------------------------------------
T ss_pred CCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC-------------------------------------------
Confidence 9999999999999998 79999998877543
Q ss_pred HhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHH
Q 043901 239 KALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVL 318 (331)
Q Consensus 239 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~ 318 (331)
+.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||++
T Consensus 184 ----------------------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 184 ----------------------------------DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRD 228 (253)
T ss_dssp ----------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHH
T ss_pred ----------------------------------CCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHH
Confidence 3346689999999999999999999999 79999999999999999
Q ss_pred HHHHcCccccccC
Q 043901 319 LAVENRQTSIYKL 331 (331)
Q Consensus 319 ~A~~~~~~~iv~l 331 (331)
+|+++|+.+|+++
T Consensus 229 ~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 229 IAQERMHHDIVRL 241 (253)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999999999863
No 7
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.2e-38 Score=266.14 Aligned_cols=216 Identities=15% Similarity=0.188 Sum_probs=191.0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHh
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTAS 79 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~ 79 (331)
++..+||.|++.|+.+.++.+++..+. ..... ..|.||||+|+..|+.+++++|++
T Consensus 1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 57 (228)
T 2dzn_A 1 MSNYPLHQACMENEFFKVQELLHSKPS-----------------------LLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57 (228)
T ss_dssp --CCHHHHHHHTTCHHHHHHHHHHCGG-----------------------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCccHHHHHHHhCCHHHHHHHHhcCcc-----------------------ccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 456899999999999999999988643 23334 789999999999999999999999
Q ss_pred cC--cccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcC--CCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcc
Q 043901 80 KD--RELISV-RNNDSETPLFLAALHGNMDAFLCLRSFN--QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDL 154 (331)
Q Consensus 80 ~~--~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g--~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~ 154 (331)
.+ .+ ++. .+..|.||||+|+..|+.+++++|++.| +++ +.++..|.||||+|+..|+.+++++|++.|++
T Consensus 58 ~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~- 132 (228)
T 2dzn_A 58 KMENVN-LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL---NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS- 132 (228)
T ss_dssp TCTTCC-GGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred cccccc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc---ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-
Confidence 99 55 555 8889999999999999999999999999 666 88999999999999999999999999999998
Q ss_pred cccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh-cccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHH
Q 043901 155 VNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY-KTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLF 233 (331)
Q Consensus 155 ~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (331)
++.+|..|.||||+|+..++ .++++.|+..+ .+.
T Consensus 133 ~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~-------------------------------------- 167 (228)
T 2dzn_A 133 VRIKDKFNQIPLHRAASVGS-------LKLIELLCGLGKSAV-------------------------------------- 167 (228)
T ss_dssp SCCCCTTSCCHHHHHHHTTC-------HHHHHHHHTTTCCCS--------------------------------------
T ss_pred ccccCCCCCCHHHHHHHcCC-------HHHHHHHHhcCcccc--------------------------------------
Confidence 99999999999999999998 79999988776 321
Q ss_pred HHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCC
Q 043901 234 FWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEK 313 (331)
Q Consensus 234 ~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 313 (331)
+.+|..|+||||+|+..|+.+++++|++..|++++.+|..|
T Consensus 168 ---------------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g 208 (228)
T 2dzn_A 168 ---------------------------------------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208 (228)
T ss_dssp ---------------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred ---------------------------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence 34566899999999999999999999944799999999999
Q ss_pred CcHHHHHHHcCcccc
Q 043901 314 KNLVLLAVENRQTSI 328 (331)
Q Consensus 314 ~t~l~~A~~~~~~~i 328 (331)
+||+++|++.+..++
T Consensus 209 ~t~l~~A~~~~~~~~ 223 (228)
T 2dzn_A 209 AKAEDVALNEQVKKF 223 (228)
T ss_dssp CBGGGGCSSTTHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999988765544
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-38 Score=267.95 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=188.2
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++||.|+..|+.+.++.+++... +. ...++.. ..|.||||+|+..|+.+++++|++.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~~~------------------~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 9 GDTPLHIAVVQGNLPAVHRLVNLFQ------------------QG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHHH------------------HT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHH------------------hc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3578999999999999888886311 01 1224555 7889999999999999999999998
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC----CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccc
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ----AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVN 156 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~----~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~ 156 (331)
|++ ++..|..|.||||+|+..|+.+++++|++.++ ++ +..+..|.||||+|+..|+.+++++|++.|.+ ++
T Consensus 69 g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~ 143 (241)
T 1k1a_A 69 GAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL---EARNYDGLTALHVAVNTECQETVQLLLERGAD-ID 143 (241)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TT
T ss_pred CCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc---cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cc
Confidence 887 88889999999999999999999999999887 55 78888999999999999999999999999888 88
Q ss_pred ccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHH
Q 043901 157 SVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFW 235 (331)
Q Consensus 157 ~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (331)
..+ ..|.||||+|+..++ .++++.|+..+.+.
T Consensus 144 ~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~---------------------------------------- 176 (241)
T 1k1a_A 144 AVDIKSGRSPLIHAVENNS-------LSMVQLLLQHGANV---------------------------------------- 176 (241)
T ss_dssp CCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT----------------------------------------
T ss_pred cccccCCCcHHHHHHHcCC-------HHHHHHHHHcCCCC----------------------------------------
Confidence 777 789999999999988 78888888776542
Q ss_pred HHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCc
Q 043901 236 LLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKN 315 (331)
Q Consensus 236 ~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 315 (331)
+.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 177 -------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t 218 (241)
T 1k1a_A 177 -------------------------------------NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDT 218 (241)
T ss_dssp -------------------------------------TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred -------------------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCC
Confidence 3446689999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCccccccC
Q 043901 316 LVLLAVENRQTSIYKL 331 (331)
Q Consensus 316 ~l~~A~~~~~~~iv~l 331 (331)
|+|+|++.|+.++++.
T Consensus 219 pl~~A~~~~~~~i~~~ 234 (241)
T 1k1a_A 219 PLMVARSRRVIDILRG 234 (241)
T ss_dssp TTTTCSSHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHhh
Confidence 9999999999999874
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=275.14 Aligned_cols=250 Identities=13% Similarity=0.091 Sum_probs=165.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
...||.|++.|+.+.+.+++...+....... ++ ...+..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~---------l~----~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g 82 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIR---------LL----SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82 (285)
T ss_dssp --------------------------CCSEE---------CC----CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchh---------hh----hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4679999999999999998876554110000 01 1123445 77888888888888888888888888
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++..+ .
T Consensus 83 ~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~-~ 156 (285)
T 3d9h_A 83 WA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPES-D 156 (285)
T ss_dssp CC-SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCSC-T
T ss_pred CC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCCCC-C
Confidence 77 8888888888888888888888888888888877 88888888888888888888888888888876 55433 4
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKA 240 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (331)
|.||||+|+..++ .++++.|+..+.+... +..+.+|++.
T Consensus 157 g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~d~~g~t~L~~--------------------------------- 196 (285)
T 3d9h_A 157 LASPIHEAARRGH-------VECVNSLIAYGGNIDHKISHLGTPLYL--------------------------------- 196 (285)
T ss_dssp TSCHHHHHHHHTC-------HHHHHHHHHTTCCTTCCBTTTBCHHHH---------------------------------
T ss_pred CCCHHHHHHHcCC-------HHHHHHHHHCCCCCCCcCCCCCCHHHH---------------------------------
Confidence 8888888888887 6888888887766543 3334444332
Q ss_pred chhhhccCCccchhhhhhhhchhhHHHHHhhh---hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHH
Q 043901 241 LPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK---DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLV 317 (331)
Q Consensus 241 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l 317 (331)
++..+..+.+++|.+. -..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+
T Consensus 197 ----------------A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l 259 (285)
T 3d9h_A 197 ----------------ACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPV 259 (285)
T ss_dssp ----------------HHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGG
T ss_pred ----------------HHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHH
Confidence 2233333444444433 1136689999999999999999999999 6999999999999999
Q ss_pred HHHHHcCcccccc
Q 043901 318 LLAVENRQTSIYK 330 (331)
Q Consensus 318 ~~A~~~~~~~iv~ 330 (331)
|+|+. +.++++
T Consensus 260 ~~A~~--~~~~~~ 270 (285)
T 3d9h_A 260 ELVPP--ESPLAQ 270 (285)
T ss_dssp GGSCT--TSHHHH
T ss_pred HHhcC--ccHHHH
Confidence 99994 445544
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=267.52 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=185.6
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++||.|+..|+.+.++.+++.+.+ ++.. ..|.||||+|+..|+.+++++|++.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 58 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWA------------------------VNIITADHVSPLHEACLGGHLSCVKILLKH 58 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 46789999999999999999987422 4455 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
|++ ++..|..|.||||+|+..|+.+++++|++.|+++ +. +..|.||||+|+..|+.+++++|++.|++ ++.+|.
T Consensus 59 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~ 132 (261)
T 2xai_A 59 GAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV---QP-ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKIS 132 (261)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBT
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCC
Confidence 988 9999999999999999999999999999999988 54 55699999999999999999999999998 999999
Q ss_pred CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHh
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKA 240 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (331)
.|.||||+|+..++ .++++.|+..+.+..
T Consensus 133 ~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~-------------------------------------------- 161 (261)
T 2xai_A 133 HLGTPLYLACENQQ-------RACVKKLLESGADVN-------------------------------------------- 161 (261)
T ss_dssp TTBCHHHHHHHTTC-------HHHHHHHHHHTCCTT--------------------------------------------
T ss_pred CCCCHHHHHHHhCC-------HHHHHHHHHcCCCCC--------------------------------------------
Confidence 99999999999998 799999988776533
Q ss_pred chhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHH
Q 043901 241 LPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 241 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
.+..|.||||+|+..|+.+++++|++ .|+|++.+|..|+||+|+|
T Consensus 162 ----------------------------------~~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A 206 (261)
T 2xai_A 162 ----------------------------------QGKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELV 206 (261)
T ss_dssp ----------------------------------CCBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGS
T ss_pred ----------------------------------CCCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhc
Confidence 13468999999999999999999999 6999999999999999999
Q ss_pred HHcCc
Q 043901 321 VENRQ 325 (331)
Q Consensus 321 ~~~~~ 325 (331)
+.+++
T Consensus 207 ~~~~~ 211 (261)
T 2xai_A 207 PPESP 211 (261)
T ss_dssp CTTCT
T ss_pred ccccc
Confidence 86554
No 11
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1e-37 Score=262.08 Aligned_cols=211 Identities=14% Similarity=0.053 Sum_probs=149.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++.+.. ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGAN------------------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCC------------------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 3566666666666666666655321 2233 55666666666666666666666666
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFN-QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
++ ++..+..|.||||+|+..|+.+++++|++.| .++ +.++..|.||||+|+..++.+++++|++.|++ ++.++.
T Consensus 68 ~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~ 142 (237)
T 3b7b_A 68 AL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV---NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDN 142 (237)
T ss_dssp CC-CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCC
Confidence 65 6666666666666666666666666666666 444 66666666666666666666666666666665 666666
Q ss_pred CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHh
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKA 240 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (331)
.|.||||+|+..++ .++++.|+..+.+.
T Consensus 143 ~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~--------------------------------------------- 170 (237)
T 3b7b_A 143 EENICLHWAAFSGC-------VDIAEILLAAKCDL--------------------------------------------- 170 (237)
T ss_dssp TSCCHHHHHHHHCC-------HHHHHHHHTTTCCT---------------------------------------------
T ss_pred CCCCHHHHHHHCCC-------HHHHHHHHHcCCCC---------------------------------------------
Confidence 66666666666666 56666665554332
Q ss_pred chhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHH
Q 043901 241 LPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 241 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
+.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|
T Consensus 171 --------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 171 --------------------------------HAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp --------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHS
T ss_pred --------------------------------CCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHH
Confidence 3456689999999999999999999999 6999999999999999999
Q ss_pred HHcCccc
Q 043901 321 VENRQTS 327 (331)
Q Consensus 321 ~~~~~~~ 327 (331)
+.+++.+
T Consensus 218 ~~~~~~~ 224 (237)
T 3b7b_A 218 SLNSQVW 224 (237)
T ss_dssp CTTCHHH
T ss_pred HHHHHHH
Confidence 9999874
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8e-38 Score=269.39 Aligned_cols=217 Identities=12% Similarity=0.036 Sum_probs=173.3
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++||.|++.|+.+.++.|++.... ...++.+ ..|.||||+|+..|+.+++++|++.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 67 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAG---------------------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTT---------------------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC---------------------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 35789999999999999988876433 1225556 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc------------------------------------------
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK------------------------------------------ 118 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~------------------------------------------ 118 (331)
|++ ++.+|..|.||||+|+..|+.+++++|++.|++.
T Consensus 68 ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (282)
T 1oy3_D 68 GAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146 (282)
T ss_dssp TCC-SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence 988 9999999999999999999999999999988652
Q ss_pred --cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC-CCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 119 --DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE-NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 119 --~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
..++.++..|.||||+|+..|+.+++++|++.|++ ++.++. .|.||||+|+..++ .++++.|+..+.+.
T Consensus 147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~-------~~~v~~Ll~~gad~ 218 (282)
T 1oy3_D 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQA-------ASVLELLLKAGADP 218 (282)
T ss_dssp GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT
T ss_pred hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence 02467888999999999999999999999999988 888875 49999999999998 78999988876543
Q ss_pred CcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhcc
Q 043901 196 GEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQ 275 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (331)
+.+
T Consensus 219 -----------------------------------------------------------------------------~~~ 221 (282)
T 1oy3_D 219 -----------------------------------------------------------------------------TAR 221 (282)
T ss_dssp -----------------------------------------------------------------------------TCC
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 345
Q ss_pred CCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcc
Q 043901 276 SGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQT 326 (331)
Q Consensus 276 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~ 326 (331)
|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||+++|......
T Consensus 222 d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 222 MYGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp CTTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC----------------
T ss_pred ccCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcccc
Confidence 6689999999999999999999999 7999999999999999999876653
No 13
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5e-37 Score=272.38 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=178.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|++.|+.+.++.++...+. .++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 81 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNV-----------------------NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTT-----------------------TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCC-----------------------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4789999999999999999976432 23444 66778888888888888888888877
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc---
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV--- 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~--- 158 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++..
T Consensus 82 ~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 156 (351)
T 3utm_A 82 AD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCH 156 (351)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCC
Confidence 76 7777778888888888888888888888888777 77777788888888888888888888887766 4433
Q ss_pred ---------------------------------------------------cCCCccHhHHHhcCCCcccccccchhHHH
Q 043901 159 ---------------------------------------------------NENGLTRLHILASKPTAFKRGSRLGLFDR 187 (331)
Q Consensus 159 ---------------------------------------------------~~~g~t~l~~A~~~~~~~~~~~~~~~~~~ 187 (331)
+..|.||||+|+..++ ....++++.
T Consensus 157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~----~~~~~~~~~ 232 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH----PKRKQVAEL 232 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCS----TTHHHHHHH
T ss_pred CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhC----ccHHHHHHH
Confidence 3556788888888754 112577788
Q ss_pred HHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHH
Q 043901 188 IIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGL 266 (331)
Q Consensus 188 li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 266 (331)
|+..+.++.. +..+.+|+|. ++..+..+.+
T Consensus 233 Ll~~g~~~~~~~~~g~t~L~~-------------------------------------------------A~~~g~~~~v 263 (351)
T 3utm_A 233 LLRKGANVNEKNKDFMTPLHV-------------------------------------------------AAERAHNDVM 263 (351)
T ss_dssp HHHTTCCTTCCCTTCCCHHHH-------------------------------------------------HHHTTCHHHH
T ss_pred HHHcCCCcCCcCCCCCCHHHH-------------------------------------------------HHHcCCHHHH
Confidence 8887776643 3344455443 2233334444
Q ss_pred HHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHH
Q 043901 267 KFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVE 322 (331)
Q Consensus 267 ~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~ 322 (331)
++|.+. +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+++|.+
T Consensus 264 ~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHSCH
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhhhH
Confidence 444433 5678899999999999999999999999 699999999999999999844
No 14
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.4e-37 Score=258.94 Aligned_cols=201 Identities=20% Similarity=0.184 Sum_probs=184.1
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ- 116 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~- 116 (331)
+++ |++.+ .++.... ..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|++.++
T Consensus 6 ~i~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 83 (223)
T 2f8y_A 6 VISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83 (223)
T ss_dssp CEETTEETT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred HHHHHHHcC-CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 567 78887 5656665 8999999999999999999999999988 99999999999999999999999999999988
Q ss_pred CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 117 AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 117 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
++ +.++..|.||||+|+..++.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 84 ~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~- 151 (223)
T 2f8y_A 84 DL---DARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNN-------VDAAVVLLKNGANK- 151 (223)
T ss_dssp CT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTC-------HHHHHHHHHTTCCT-
T ss_pred Cc---ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCC-------HHHHHHHHHcCCCC-
Confidence 55 88999999999999999999999999999998 99999999999999999998 79999998876542
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
+.++
T Consensus 152 ----------------------------------------------------------------------------~~~~ 155 (223)
T 2f8y_A 152 ----------------------------------------------------------------------------DMQN 155 (223)
T ss_dssp ----------------------------------------------------------------------------TCCC
T ss_pred ----------------------------------------------------------------------------CCcC
Confidence 3346
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+++|+++++.+++++
T Consensus 156 ~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~ 209 (223)
T 2f8y_A 156 NREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRL 209 (223)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHH
Confidence 689999999999999999999999 699999999999999999999999999863
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=6.5e-38 Score=281.07 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=195.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccc-cCCccH-----------HHH-HH--------hhhCCCcceec-cCCCc
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKL-TNLETQ-----------LYT-LQ--------QQLGKPILYIR-LGGNH 60 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~~~t~-----------~v~-Ll--------~~~~~~~~~~~-~~g~t 60 (331)
..+||.|+..|. +.++.++... ..... ..+.|| +++ |+ +.| .+ ++.. ..|.|
T Consensus 95 ~t~L~~Aa~~~~-~~~~~L~~~~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g-a~-vn~~d~~g~T 168 (373)
T 2fo1_E 95 PIKLHTEAAGSY-AITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-AD-VNAMDCDENT 168 (373)
T ss_dssp CCHHHHHHHSSS-CCCSCCSTTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-CC-TTCCCTTSCC
T ss_pred ccHHHHHhcCCc-hHHHHhcccc---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-CC-CcCCCCCCCC
Confidence 467888888554 5444443321 11222 233566 444 44 666 33 5566 89999
Q ss_pred hhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC---CCccccccccCCCCcHHHHHHh
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFN---QAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g---~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
|||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|++.+ +++ +.++..|.||||+|+.
T Consensus 169 pL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~d~~g~t~L~~A~~ 244 (373)
T 2fo1_E 169 PLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI---EELDRNGMTALMIVAH 244 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT---SCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh---hhcCCCCCCHHHHHHH
Confidence 99999999999999999999998 9999999999999999999999999999998 677 8999999999999999
Q ss_pred cC---CHHHHHHHHHhCCccccc--------ccCCCccHhHHHhcCCCcccccccchhHHHHHhhh-cccCcCCCCCCCc
Q 043901 138 GE---YFSIAFQIMRAYPDLVNS--------VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY-KTKGEANDEESPE 205 (331)
Q Consensus 138 ~~---~~~~~~~Ll~~~~~~~~~--------~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~~ 205 (331)
.+ +.+++++|++.|++ ++. .|..|.||||+|+..++ .++++.|+..+ .+.
T Consensus 245 ~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-------~~~v~~Ll~~~~~~~---------- 306 (373)
T 2fo1_E 245 NEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSN-------MPIVKYLVGEKGSNK---------- 306 (373)
T ss_dssp SCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCC-------HHHHHHHHHHSCCCT----------
T ss_pred hCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCC-------HHHHHHHHHhcCCCc----------
Confidence 98 89999999999988 665 67789999999999999 79999988765 221
Q ss_pred ccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHH
Q 043901 206 CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILI 285 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~ 285 (331)
+.+|..|+||||+
T Consensus 307 -------------------------------------------------------------------n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 307 -------------------------------------------------------------------DKQDEDGKTPIML 319 (373)
T ss_dssp -------------------------------------------------------------------TCCCTTCCCHHHH
T ss_pred -------------------------------------------------------------------cCcCCCCCCHHHH
Confidence 4457789999999
Q ss_pred HHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 286 AAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 286 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|+..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.+||++
T Consensus 320 A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~ 364 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDI 364 (373)
T ss_dssp HHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999 699999999999999999999999999873
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-37 Score=276.77 Aligned_cols=218 Identities=15% Similarity=0.148 Sum_probs=188.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+||.|+..|+.+.++.|++.+.+ ++.. ..|.||||+|+..|+.+++++|++.+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVS------------------------PTIQNRFGCTALHLACKFGCVDTAKYLASVG 76 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 4689999999999999998887422 4445 78999999999999999999999998
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhc----CCCcccccc-----------------ccCCCCcHHHHHHhcC-
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSF----NQAKDNRQC-----------------RKNNGETILHSAISGE- 139 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~----g~~~~~~~~-----------------~~~~g~t~Lh~A~~~~- 139 (331)
++ ++ +..|.||||+|+..|+.+++++|++. |+++ +. ++..|.||||+|+..|
T Consensus 77 ~~-~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 150 (364)
T 3ljn_A 77 EV-HS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP---ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP 150 (364)
T ss_dssp CC-CC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH---HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG
T ss_pred CC-cc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH---HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC
Confidence 85 43 34799999999999999999999998 7776 55 8889999999999999
Q ss_pred -CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCc
Q 043901 140 -YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDK 218 (331)
Q Consensus 140 -~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (331)
+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+....
T Consensus 151 ~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~-------------------- 202 (364)
T 3ljn_A 151 EYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRN-------REALDLMMDTVPSKSSL-------------------- 202 (364)
T ss_dssp GGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHCSCSSSC--------------------
T ss_pred chHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCC-------HHHHHHHHhcccccccc--------------------
Confidence 99999999999988 99999999999999999998 79999998877652210
Q ss_pred cCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHH
Q 043901 219 CGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKI 298 (331)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~L 298 (331)
.. +.++..|+||||+|+..|+.++|++|
T Consensus 203 ----------------------------------------~~------------~~~~~~g~t~L~~A~~~g~~~~v~~L 230 (364)
T 3ljn_A 203 ----------------------------------------RL------------DYANKQGNSHLHWAILINWEDVAMRF 230 (364)
T ss_dssp ----------------------------------------CT------------TCCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred ----------------------------------------cc------------cccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 00 45577899999999999999999999
Q ss_pred HhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 299 LDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 299 l~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++ .|++++.+|..|+||||+|+.+|+.++|++
T Consensus 231 l~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 231 VE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp HT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred HH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Confidence 99 799999999999999999999999999863
No 17
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.3e-36 Score=269.03 Aligned_cols=274 Identities=16% Similarity=0.113 Sum_probs=210.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec--cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR--LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
..+|+.||+.|+.+.|+.|++.+.+ ++.+ ..|.||||+|+..|+.++|++|+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gad------------------------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGAN------------------------VNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCC------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCC------------------------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 3579999999999999999987532 3333 5699999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccc---
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNS--- 157 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~--- 157 (331)
|++ ++.++..+.+|++.++..+...++..+++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.
T Consensus 82 ga~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~ 156 (337)
T 4g8k_A 82 GAD-PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRK 156 (337)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCC
T ss_pred CCc-hhhhccCCCchhHHHHhcccchhhHHhhhccchh---hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhc
Confidence 998 9999999999999999999999999999999998 99999999999999999999999999999987 543
Q ss_pred -------ccCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 158 -------VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 158 -------~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.+..|.||||+|+..|+ .++++.|+.. +.++.. +..+.++++....+. ...
T Consensus 157 ~~~~~~~~~~~g~T~L~~A~~~g~-------~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-------------~~~ 216 (337)
T 4g8k_A 157 TKEDQERLRKGGATALMDAAEKGH-------VEVLKILLDEMGADVNACDNMGRNALIHALLSS-------------DDS 216 (337)
T ss_dssp CC-----CTTCSCCHHHHHHHHTC-------HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-------------CTT
T ss_pred cccccccccCCCCcHHHHHHHCCC-------HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-------------Ccc
Confidence 34579999999999999 7999999964 555543 334445544311111 011
Q ss_pred hHHHHHHHHHHhchhhhccCCccc-hhhhhhhhchhhHHHHHhhh-----hccCCCCchHHHHHHhcChHHHHHHHHhhC
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKNF-KISIIPYIKKVQGLKFMEKK-----DQQSGRNETAILIAAKMGVAEMVKKILDTF 302 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~l~~~-----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 302 (331)
....++.+|++........+.... +++.++..+..+.++.|... +.+|..|+||||+|++.|+.++|++|++ .
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ 295 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-R 295 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-T
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-C
Confidence 122344555543322221111111 46667777777777777653 5678888899999998888999988888 6
Q ss_pred CccccccccCCCcHHHHHHHcCccccccC
Q 043901 303 PVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 303 ~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|++++. ++|||+|+++|+.+||++
T Consensus 296 GAd~n~-----~~~L~~A~~~~~~~iv~~ 319 (337)
T 4g8k_A 296 GASTDC-----GDLVMTARRNYDHSLVKV 319 (337)
T ss_dssp SCSSTT-----CCHHHHHHHTTCHHHHHH
T ss_pred CCCCCC-----CCHHHHHHHcCCHHHHHH
Confidence 888764 458889988888888763
No 18
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=255.15 Aligned_cols=217 Identities=14% Similarity=0.123 Sum_probs=187.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|+..|+.+.++.+++.+.. ++.. ..|.||||+|+..|+.+++++|++.+
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYD------------------------VRQPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred chHHHHHHHcCChHHHHHHHHcCCC------------------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 4679999999999999999887432 3444 77999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++.....+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|.+ ++.++..
T Consensus 66 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~ 141 (240)
T 3eu9_A 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP---SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQN 141 (240)
T ss_dssp CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCC
Confidence 8844445556999999999999999999999999988 88999999999999999999999999999988 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|.||||+|+..++. ..+++.++..+.+..
T Consensus 142 g~t~l~~a~~~~~~------~~~~~~L~~~~~~~~--------------------------------------------- 170 (240)
T 3eu9_A 142 GMTPLMWAAYRTHS------VDPTRLLLTFNVSVN--------------------------------------------- 170 (240)
T ss_dssp SCCHHHHHHHHCCS------STTHHHHHHTTCCTT---------------------------------------------
T ss_pred CCcHHHHHHHhCCh------HHHHHHHHhcCCCcc---------------------------------------------
Confidence 99999999966653 467777766665433
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC-CCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHH
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG-RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
..+. .|.||||+|+..|+.+++++|++ .|++++.+|..|+||+++|
T Consensus 171 --------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A 217 (240)
T 3eu9_A 171 --------------------------------LGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLA 217 (240)
T ss_dssp --------------------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHH
T ss_pred --------------------------------hhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHH
Confidence 2232 69999999999999999999999 5999999999999999999
Q ss_pred HHcCccccccC
Q 043901 321 VENRQTSIYKL 331 (331)
Q Consensus 321 ~~~~~~~iv~l 331 (331)
+++|+.+++++
T Consensus 218 ~~~~~~~~v~~ 228 (240)
T 3eu9_A 218 KQRKNVWMINH 228 (240)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCcHHHHHH
Confidence 99999999863
No 19
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.8e-37 Score=265.14 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=172.6
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcc--cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCC
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRE--LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g 128 (331)
++.. ..|.||||+|+..|+.+++++|++.+++ .++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g 78 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGG 78 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCC
Confidence 4455 8899999999999999999999998765 37889999999999999999999999999999999 9999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCc----------------------------------------------ccccccCCC
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPD----------------------------------------------LVNSVNENG 162 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~----------------------------------------------~~~~~~~~g 162 (331)
.||||+|+..|+.+++++|++.++. +++.++..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999997754 256678899
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhch
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALP 242 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 242 (331)
.||||+|+..++ .++++.|+..+.++.
T Consensus 159 ~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~---------------------------------------------- 185 (282)
T 1oy3_D 159 HTPLHVAVIHKD-------AEMVRLLRDAGADLN---------------------------------------------- 185 (282)
T ss_dssp CCHHHHHHHTTC-------HHHHHHHHHHTCCTT----------------------------------------------
T ss_pred cCHHHHHHHcCC-------HHHHHHHHHcCCCCC----------------------------------------------
Confidence 999999999998 799999988775533
Q ss_pred hhhccCCccchhhhhhhhchhhHHHHHhhhhccC-CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 243 IVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS-GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 243 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus 186 -------------------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~ 233 (282)
T 1oy3_D 186 -------------------------------KPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSAL 233 (282)
T ss_dssp -------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred -------------------------------CCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHH
Confidence 222 359999999999999999999999 69999999999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
.+|+.+++++
T Consensus 234 ~~~~~~~v~~ 243 (282)
T 1oy3_D 234 LRPNPILARL 243 (282)
T ss_dssp TSSCHHHHHH
T ss_pred HcCCcHHHHH
Confidence 9999999863
No 20
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-36 Score=262.93 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=159.1
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET 130 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t 130 (331)
++.+ ..|.||||+|+..|+.+++++|++.|++ ++..| |.||||+|+..|+.+++++|+++|+++ +.++..|.|
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~t 97 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNT 97 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT---TCCCTTSCC
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCc
Confidence 3455 8899999999999999999999999987 88774 999999999999999999999999998 999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCcccccccCCC-ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccccc
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENG-LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRS 209 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 209 (331)
|||+|+..|+.+++++|++.|++ ++.++..| .||||+|+..++ .++++.|+..+.+...
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~------------ 157 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLND-------VSIVSYFLSEIPSTFD------------ 157 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTC-------HHHHHHHHTTSCTTCC------------
T ss_pred HHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCcccc------------
Confidence 99999999999999999999998 99999999 899999999998 7999999887754321
Q ss_pred ccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhc
Q 043901 210 ISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKM 289 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~ 289 (331)
...|.||||+|+..
T Consensus 158 ------------------------------------------------------------------~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 158 ------------------------------------------------------------------LAILLSCIHITIKN 171 (285)
T ss_dssp ------------------------------------------------------------------CSTHHHHHHHHHHT
T ss_pred ------------------------------------------------------------------ccCCccHHHHHHHc
Confidence 11477777777777
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcH-HHHHHHcCcccccc
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNL-VLLAVENRQTSIYK 330 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~-l~~A~~~~~~~iv~ 330 (331)
|+.+++++|++ .|++++.+|..|+|| ||+|+.+++.++++
T Consensus 172 g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v~ 212 (285)
T 3kea_A 172 GHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212 (285)
T ss_dssp TCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred ChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 77777777777 477777777777776 77777777777665
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-36 Score=258.31 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=145.5
Q ss_pred ceec-cCCCchhhhhhccC-------------CHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 52 LYIR-LGGNHGRKYIKPLG-------------NEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
++.+ ..|.||||+|+..| +.+++++|++.|++..+..|..|.||||+|+..|+.+++++|++.|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4556 88999999999977 899999999999984456689999999999999999999999999999
Q ss_pred ccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 118 KDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 118 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
+ +.++..|.||||+|+..|+.+++++|++.++.+++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 83 ~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~-- 150 (253)
T 1yyh_A 83 A---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV-------EGMLEDLINSHADV-- 150 (253)
T ss_dssp T---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC-------SSHHHHHHHTTCCT--
T ss_pred C---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh-------HHHHHHHHHcCCCC--
Confidence 8 99999999999999999999999999999986699999999999999999998 78999998876542
Q ss_pred CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC
Q 043901 198 ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (331)
+.++.
T Consensus 151 ---------------------------------------------------------------------------~~~d~ 155 (253)
T 1yyh_A 151 ---------------------------------------------------------------------------NAVDD 155 (253)
T ss_dssp ---------------------------------------------------------------------------TCBCT
T ss_pred ---------------------------------------------------------------------------CCcCC
Confidence 33466
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+++++
T Consensus 156 ~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp TSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHH
Confidence 79999999999999999999999 699999999999999999999999998863
No 22
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-35 Score=243.48 Aligned_cols=189 Identities=13% Similarity=0.041 Sum_probs=173.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.||||.|+..|+.++++.|+..++.+++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A 79 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI---NLQNSISDSPYLYA 79 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHH
Confidence 457899999999999999999999998559999999999999999999999999999999999 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.+..+++..+..|.||||+|+..++ .++++.|+..+....
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~------------------- 133 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH-------IDNVKLLLEDGREDI------------------- 133 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC-------HHHHHHHHHHCCCCT-------------------
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC-------HHHHHHHHHcCCCCc-------------------
Confidence 999999999999977766699999999999999999998 799999988762211
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh----
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV---- 291 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~---- 291 (331)
+.++..|+||||+|+..|+
T Consensus 134 ---------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 134 ---------------------------------------------------------DFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp ---------------------------------------------------------TCCCTTSCCHHHHHHHSSCCSHH
T ss_pred ---------------------------------------------------------CCCCCCCCCHHHHHHHhccchhh
Confidence 3456689999999999987
Q ss_pred -HHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 292 -AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 292 -~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.+++++|++ .|++++.+|..|+||+|+|+++|+.+++++
T Consensus 157 ~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 157 YQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 999999999 699999999999999999999999999863
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-35 Score=249.69 Aligned_cols=190 Identities=14% Similarity=0.177 Sum_probs=176.1
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET 130 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t 130 (331)
++.+ .+|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.|
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t 79 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGST 79 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCC
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCc
Confidence 4455 7899999999999999999999999998 9999999999999999999999999999999998 999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccc
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSI 210 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 210 (331)
|||+|+..|+.+++++|++.+..+++..+..|.||||+|+..++ .++++.|+..+.+.
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~--------------- 137 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-------VDLVKLLLSKGSDI--------------- 137 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCC---------------
Confidence 99999999999999999999965599999999999999999998 79999998876542
Q ss_pred cccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcC
Q 043901 211 SFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMG 290 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g 290 (331)
+.++..|.||||+|+..|
T Consensus 138 --------------------------------------------------------------~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 138 --------------------------------------------------------------NIRDNEENICLHWAAFSG 155 (237)
T ss_dssp --------------------------------------------------------------TCCCTTSCCHHHHHHHHC
T ss_pred --------------------------------------------------------------CccCCCCCCHHHHHHHCC
Confidence 234567999999999999
Q ss_pred hHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 291 VAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 291 ~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+.+++++|++ .|++++.+|..|+||||+|+++++.++++
T Consensus 156 ~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (237)
T 3b7b_A 156 CVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVV 194 (237)
T ss_dssp CHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHH
Confidence 9999999999 69999999999999999999999999886
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-36 Score=263.52 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=166.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
.+|+.|+..|+.+.++.+++.+.+ ++.. ..|.||||+|+..|+.+++++|++.|+
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 97 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERGAD------------------------INYANVDGLTALHQACIDDNVDMVKFLVENGA 97 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCC------------------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCC------------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 568888888888888888776432 3444 678888888888888888888888887
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccc------
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVN------ 156 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~------ 156 (331)
+ ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++++.....+++
T Consensus 98 ~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~ 173 (299)
T 1s70_B 98 N-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV---GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173 (299)
T ss_dssp C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred C-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhh
Confidence 7 8888888888888888888888888888888887 78888888888888888888888777654332222
Q ss_pred --------------------cccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 157 --------------------SVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 157 --------------------~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..+..|.||||+|+..++ .++++.|+..+.++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~d~--------------------- 225 (299)
T 1s70_B 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-------TEVLKLLIQARYDV--------------------- 225 (299)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC-------HHHHHHHHTTTCCT---------------------
T ss_pred hhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc-------HHHHHHHHHcCCCC---------------------
Confidence 245678888888888887 67888777665432
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.+|..|.||||+|+..|+.++++
T Consensus 226 --------------------------------------------------------~~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 226 --------------------------------------------------------NIKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp --------------------------------------------------------TCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCcHHHHHHhcCCHHHHH
Confidence 345678999999999999999999
Q ss_pred HHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 297 KILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
+|++ .|++++.+|..|+||+|+|++..
T Consensus 250 ~Ll~-~gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 250 ILVE-NLCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp HHHH-TTCCTTCCCTTSCCTTTSCCSGG
T ss_pred HHHH-cCCCCCCcCCCCCCHHHHHHHHH
Confidence 9999 69999999999999999997644
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.4e-35 Score=248.12 Aligned_cols=186 Identities=16% Similarity=0.136 Sum_probs=171.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHh----cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTAS----KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETI 131 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~ 131 (331)
.+|.||||+|+..|+.+++++|++ .+.+ ++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~ 82 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTA 82 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCH
Confidence 789999999999999999999997 5666 9999999999999999999999999999999998 8999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCc---ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 132 LHSAISGEYFSIAFQIMRAYPD---LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 132 Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
||+|+..|+.+++++|++.+.. +++..+..|.||||+|+..++ .++++.|+..+.+..
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~------------ 143 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADID------------ 143 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTT------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-------HHHHHHHHHcCCCcc------------
Confidence 9999999999999999999972 388899999999999999998 799999988775533
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC-CCCchHHHHHH
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS-GRNETAILIAA 287 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~tpLh~A~ 287 (331)
..+ ..|.||||+|+
T Consensus 144 -----------------------------------------------------------------~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 144 -----------------------------------------------------------------AVDIKSGRSPLIHAV 158 (241)
T ss_dssp -----------------------------------------------------------------CCCTTTCCCHHHHHH
T ss_pred -----------------------------------------------------------------cccccCCCcHHHHHH
Confidence 123 46999999999
Q ss_pred hcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 288 KMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 288 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.++++
T Consensus 159 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 159 ENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999 69999999999999999999999999886
No 26
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2e-35 Score=247.35 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=168.1
Q ss_pred CCCchhhhhhccCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc--cccccccCCCCcHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASK-DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK--DNRQCRKNNGETILH 133 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~~~g~t~Lh 133 (331)
.|.||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ ...+.+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 489999999999999999999998 666 9999999999999999999999999999999875 122456779999999
Q ss_pred HHHhcCCHHHHHHHHHhCCcccccccC-------------CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCC
Q 043901 134 SAISGEYFSIAFQIMRAYPDLVNSVNE-------------NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEAND 200 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 200 (331)
+|+..|+.+++++|++.|++ ++.++. .|.||||+|+..++ .++++.|+..+.++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~----- 147 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGS-------EEIVRLLIEHGADI----- 147 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC-------HHHHHHHHHTTCCT-----
T ss_pred HHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCC-------HHHHHHHHHCCCCC-----
Confidence 99999999999999999988 777765 79999999999998 79999998876543
Q ss_pred CCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCc
Q 043901 201 EESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNE 280 (331)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 280 (331)
+.+|..|+
T Consensus 148 ------------------------------------------------------------------------~~~d~~g~ 155 (232)
T 2rfa_A 148 ------------------------------------------------------------------------RAQDSLGN 155 (232)
T ss_dssp ------------------------------------------------------------------------TCCCTTSC
T ss_pred ------------------------------------------------------------------------CCCCCCCC
Confidence 34566899
Q ss_pred hHHHHHHhcChHHHH----HHHHhhCCccc------cccccCCCcHHHHHHHcCccccccC
Q 043901 281 TAILIAAKMGVAEMV----KKILDTFPVAM------QDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 281 tpLh~A~~~g~~~~v----~~Ll~~~~~~~------~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
||||+|+..|+.+++ ++|++ .|+++ +.+|..|+||||+|+++|+.+++++
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~ 215 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999988 99999 68887 6899999999999999999999863
No 27
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=252.60 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=167.1
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
+|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHH
Confidence 589999999999999999999999988 9999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++. +..|.||||+|+..++ .++++.|+..+.+.
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~--------------------- 127 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGH-------VECVNSLIAYGGNI--------------------- 127 (261)
T ss_dssp HHTCHHHHHHHHHTTCC-SSC-SCTTCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------------
T ss_pred HcCCHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCc-------HHHHHHHHHcCCCC---------------------
Confidence 99999999999999987 664 4569999999999998 79999998877543
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 128 --------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~ 151 (261)
T 2xai_A 128 --------------------------------------------------------DHKISHLGTPLYLACENQQRACVK 151 (261)
T ss_dssp --------------------------------------------------------TCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CcCCCCCCCHHHHHHHhCCHHHHH
Confidence 234667999999999999999999
Q ss_pred HHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 297 KILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|++ .|++++. |..|+||||+|+++++.+++++
T Consensus 152 ~Ll~-~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~ 184 (261)
T 2xai_A 152 KLLE-SGADVNQ-GKGQDSPLHAVARTASEELACL 184 (261)
T ss_dssp HHHH-HTCCTTC-CBTTBCHHHHHHHHTCHHHHHH
T ss_pred HHHH-cCCCCCC-CCCCCChHHHHHHcCCHHHHHH
Confidence 9999 5999995 8899999999999999998863
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-35 Score=256.44 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=191.5
Q ss_pred HHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcccccc
Q 043901 8 KFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRELISV 87 (331)
Q Consensus 8 ~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 87 (331)
.++..|..+.++.++............ .........|.||||.|+..|+.+++++|++.|++ ++.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~ 68 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVK--------------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INY 68 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCC--------------CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTC
T ss_pred hHHHHHHHHHHHHHHcccccccccccc--------------CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-Ccc
Confidence 467888889999999876653311100 01122225678999999999999999999999998 999
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhH
Q 043901 88 RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLH 167 (331)
Q Consensus 88 ~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 167 (331)
.|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~ 144 (299)
T 1s70_B 69 ANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLD 144 (299)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHH
Confidence 9999999999999999999999999999998 99999999999999999999999999999998 9999999999999
Q ss_pred HHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhcc
Q 043901 168 ILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGL 247 (331)
Q Consensus 168 ~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~ 247 (331)
+|+..++ .++++.++........ .... ............++. .+.
T Consensus 145 ~A~~~~~-------~~~~~~ll~~~~~~~~--------------------------~~~~-~~~~~~~~~~~~~l~-~~~ 189 (299)
T 1s70_B 145 IAEEEAM-------EELLQNEVNRQGVDIE--------------------------AARK-EEERIMLRDARQWLN-SGH 189 (299)
T ss_dssp HCCSHHH-------HHHHHHHHHHHTCCHH--------------------------HHHH-HHHHHHHHHHHHHHH-HTC
T ss_pred HHHhcch-------HHHHHHHHhhcCCCch--------------------------hhhh-hhhhHHHHHHHHHHh-ccC
Confidence 9999887 6777776654321110 0000 000000000000000 010
Q ss_pred CCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccc
Q 043901 248 GLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTS 327 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~ 327 (331)
... ...+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+
T Consensus 190 ~~~----------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~ 246 (299)
T 1s70_B 190 IND----------------------VRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEE 246 (299)
T ss_dssp CCC----------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred cch----------------------hhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHH
Confidence 000 2346689999999999999999999999 79999999999999999999999999
Q ss_pred cccC
Q 043901 328 IYKL 331 (331)
Q Consensus 328 iv~l 331 (331)
++++
T Consensus 247 ~v~~ 250 (299)
T 1s70_B 247 ACRI 250 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.4e-35 Score=245.17 Aligned_cols=187 Identities=16% Similarity=0.100 Sum_probs=168.3
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc-ccCCCCcHHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC-RKNNGETILHSAI 136 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A~ 136 (331)
|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +++. .+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-CGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-cccccCCCCCCCHHHHHH
Confidence 7899999999999999999999999866779999999999999999999999999999544 2256 8899999999999
Q ss_pred hcCCHHHHHHHHHhC--CcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 137 SGEYFSIAFQIMRAY--PDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
..|+.+++++|++.| .+ ++..+..|.||||+|+..++ .++++.|+..+.+.
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~------------------- 133 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASV------------------- 133 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCS-------------------
T ss_pred HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCC-------HhHHHHHHHcCCCc-------------------
Confidence 999999999999998 55 89999999999999999998 79999998876543
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEM 294 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~ 294 (331)
+.++..|.||||+|+..|+.++
T Consensus 134 ----------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 134 ----------------------------------------------------------RIKDKFNQIPLHRAASVGSLKL 155 (228)
T ss_dssp ----------------------------------------------------------CCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----------------------------------------------------------cccCCCCCCHHHHHHHcCCHHH
Confidence 2346679999999999999999
Q ss_pred HHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 295 VKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 295 v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+++|++..+++++.+|..|+||||+|+..|+.++++
T Consensus 156 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~ 191 (228)
T 2dzn_A 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191 (228)
T ss_dssp HHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999433999999999999999999999999886
No 30
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.6e-35 Score=261.30 Aligned_cols=248 Identities=15% Similarity=0.067 Sum_probs=195.7
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.|+||.|+..|+.+.++.|+......++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 98 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHH
Confidence 678899999999999999999998755559999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSK 214 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (331)
+..|+.+++++|++.|++ ++..|..|.||||+|+..++ .++++.|+..+.+... +..+.+|.+. +...
T Consensus 99 ~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~g~~~l~~---a~~~ 167 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNR-------VEVCSLLLSHGADPTLVNCHGKSAVDM---APTP 167 (351)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTSCCHHHH---CSSH
T ss_pred HHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCccccCCCCcchHH---Hhhh
Confidence 999999999999999998 99999999999999999999 8999999998877653 3344444433 1100
Q ss_pred CCCccCCCCCcchhhHHHH-------HHH-------HHHhchhhh-------ccCCccchhhhhhhh---chhhHHHHHh
Q 043901 215 NDDKCGQFFPPNYAACFLF-------FWL-------LMKALPIVL-------GLGLKNFKISIIPYI---KKVQGLKFME 270 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~-------~~~-------l~~~~l~~~-------g~~~~~~~~~~~~~~---~~~~~~~~l~ 270 (331)
.......+ ... .+...+... ..+.+ +++.++.. +..+.+++|.
T Consensus 168 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t--~L~~A~~~~~~~~~~~~~~Ll 234 (351)
T 3utm_A 168 -----------ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET--ALHCAVASLHPKRKQVAELLL 234 (351)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC--HHHHHHHCCSTTHHHHHHHHH
T ss_pred -----------hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC--HHHHHHHHhCccHHHHHHHHH
Confidence 00000000 000 000000000 11222 34444444 4456677777
Q ss_pred hh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 271 KK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 271 ~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+. +.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.++|++
T Consensus 235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~ 298 (351)
T 3utm_A 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRL 298 (351)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 65 6678899999999999999999999999 799999999999999999999999999863
No 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.1e-35 Score=250.26 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=175.8
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCccccccc-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVR-NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
.|.||||.|+..|+.+++++|++.+++ ++.. +..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHH
Confidence 578999999999999999999999988 8877 788999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc----------CCCCCCCc
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE----------ANDEESPE 205 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~~~~~~ 205 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++. ..++.+ +-........ ...+.+|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~----~~~~~L--l~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKV----KALKFL--YKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCH----HHHHHH--HHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCH----HHHHHH--HHhCCCcccccccHHHHHhhccCCCcHH
Confidence 999999999999999998 999999999999999999874 112221 2111111111 22333443
Q ss_pred ccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh-----hccCCCCc
Q 043901 206 CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK-----DQQSGRNE 280 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~g~ 280 (331)
+ .++..+..+.+++|.+. +.++..|.
T Consensus 153 ~-------------------------------------------------~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 153 M-------------------------------------------------DAAEKGHVEVLKILLDEMGADVNACDNMGR 183 (285)
T ss_dssp H-------------------------------------------------HHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred H-------------------------------------------------HHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 3 23344445555555442 56678899
Q ss_pred hHHHHHHhcCh----HHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 281 TAILIAAKMGV----AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 281 tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
||||+|+..|+ .+++++|++ .|++++.+|..|+||||+|+++|+.++++
T Consensus 184 t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 184 NALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp CHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 99999999999 999999999 79999999999999999999999999886
No 32
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.1e-34 Score=254.76 Aligned_cols=241 Identities=16% Similarity=0.101 Sum_probs=188.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
..+||.|+..|+.+.++.|++.+.... .....+.++ .+. +++.+ .+ ++.. ..|.||||+|+..|
T Consensus 60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~~g~t~l~~A~~~~ 136 (337)
T 4g8k_A 60 WTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKG-AD-VNECDFYGFTAFMEAAVYG 136 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHTTT-CC-TTCBCTTCCBHHHHHHHTT
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCchh-hhccCCCchhHHHHhcccchhhHHhhhcc-ch-hhhhccCCCCHHHHHHHcC
Confidence 579999999999999999998766533 222233444 555 66666 33 5556 89999999999999
Q ss_pred CHHHHHHHHhcCcccccc----------cCCCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhc
Q 043901 70 NEAMCHCTASKDRELISV----------RNNDSETPLFLAALHGNMDAFLCLRS-FNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~~~~~----------~d~~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
+.+++++|++.|++ ++. .+..|.||||+|+..|+.+++++|++ .|+++ +.++..|.||+|.++..
T Consensus 137 ~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~---n~~d~~g~t~l~~~~~~ 212 (337)
T 4g8k_A 137 KVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLS 212 (337)
T ss_dssp CHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT---TCCCTTSCCHHHHHHHH
T ss_pred cHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc---CccCCCCCcHHHHHHHH
Confidence 99999999999886 554 35568999999999999999999996 58988 99999999999987765
Q ss_pred CC----HHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccc
Q 043901 139 EY----FSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISF 212 (331)
Q Consensus 139 ~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~ 212 (331)
+. .+++++|+++|++ ++.+|..|+||||+|+..++ .++++.|+.. +.++.. +..+.+|+|.
T Consensus 213 ~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~-------~~~v~~Ll~~~~~~vn~~d~~G~TpL~~----- 279 (337)
T 4g8k_A 213 SDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEINDTDSDGKTALLL----- 279 (337)
T ss_dssp SCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTC-------HHHHHHHHTSTTCCTTCBCTTSCBHHHH-----
T ss_pred cCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhh-------hHHHHHHHHhcCCcccCcCCCCCCHHHH-----
Confidence 43 4688999999998 99999999999999999998 7899988864 444432 4455555443
Q ss_pred cCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChH
Q 043901 213 SKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVA 292 (331)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~ 292 (331)
++..+..+.+++|.+. --|.++.||||+|+.+|+.
T Consensus 280 --------------------------------------------A~~~g~~~iv~~Ll~~-GAd~n~~~~L~~A~~~~~~ 314 (337)
T 4g8k_A 280 --------------------------------------------AVELKLKKIAELLCKR-GASTDCGDLVMTARRNYDH 314 (337)
T ss_dssp --------------------------------------------HHHTTCHHHHHHHHTT-SCSSTTCCHHHHHHHTTCH
T ss_pred --------------------------------------------HHHcCCHHHHHHHHHC-CCCCCCCCHHHHHHHcCCH
Confidence 3455555666666653 2244577899999999999
Q ss_pred HHHHHHHhhCCcccccc
Q 043901 293 EMVKKILDTFPVAMQDM 309 (331)
Q Consensus 293 ~~v~~Ll~~~~~~~~~~ 309 (331)
++|++||+ +|+++|..
T Consensus 315 ~iv~~Ll~-~GA~~d~~ 330 (337)
T 4g8k_A 315 SLVKVLLS-HGAKEDFH 330 (337)
T ss_dssp HHHHHHHH-TTCCC---
T ss_pred HHHHHHHH-CcCCCCCC
Confidence 99999999 79998863
No 33
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=251.40 Aligned_cols=214 Identities=15% Similarity=0.094 Sum_probs=162.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcC----------cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKD----------RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK 125 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~----------~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 125 (331)
..|.|+||+|+..|+.+.+..++..+ ...++..|..|.||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~ 89 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV---NIIT 89 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS---CEEC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcC
Confidence 67999999999999977666655432 1226678999999999999999999999999999998 9999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCc
Q 043901 126 NNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPE 205 (331)
Q Consensus 126 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 205 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+......+.+|+
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~g~t~L 161 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGS-------WDCVNLLLQHGASVQPESDLASPI 161 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCSSCSCTTSCHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCH-------HHHHHHHHHCCCCCCCCCCCCCHH
Confidence 9999999999999999999999999988 99999999999999999998 799999999988776555555554
Q ss_pred ccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCch
Q 043901 206 CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNET 281 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~t 281 (331)
+. ++..+..+.+++|.+. +.++..|.|
T Consensus 162 ~~-------------------------------------------------A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t 192 (285)
T 3d9h_A 162 HE-------------------------------------------------AARRGHVECVNSLIAYGGNIDHKISHLGT 192 (285)
T ss_dssp HH-------------------------------------------------HHHHTCHHHHHHHHHTTCCTTCCBTTTBC
T ss_pred HH-------------------------------------------------HHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 43 2344444445555443 567889999
Q ss_pred HHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 282 AILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 282 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|||+|+..|+.+++++|++ .|++++. |..|+||||+|+.+++.+++++
T Consensus 193 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~ 240 (285)
T 3d9h_A 193 PLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACL 240 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999999999 6999994 8999999999999999998863
No 34
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.4e-34 Score=242.08 Aligned_cols=186 Identities=23% Similarity=0.189 Sum_probs=172.9
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.+.||||.|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHH
Confidence 57899999999999999999999988778999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~--------------------- 132 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNR-------HEIAVMLLEGGANP--------------------- 132 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------------
T ss_pred HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC---------------------
Confidence 99999999999999998 99999999999999999998 78999988766442
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 133 --------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 133 --------------------------------------------------------DAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp --------------------------------------------------------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCcHHHHHHHcCCHHHHH
Confidence 234567999999999999999999
Q ss_pred HHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 297 KILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|++ .|++++.+|..|+||||+|+.+++.+++++
T Consensus 157 ~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 157 ILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp HHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence 9999 799999999999999999999999998863
No 35
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.3e-36 Score=251.67 Aligned_cols=187 Identities=18% Similarity=0.188 Sum_probs=158.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcc---cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRE---LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETIL 132 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~L 132 (331)
.+|.||||+|+..|+.+++++|++.+.. .++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.|||
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L 82 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPL 82 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHH
Confidence 6789999999999999999999987763 38888999999999999999999999999999988 88899999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCc-----ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccc
Q 043901 133 HSAISGEYFSIAFQIMRAYPD-----LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECN 207 (331)
Q Consensus 133 h~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 207 (331)
|+|+..|+.+++++|++.+.. .++..+..|.||||+|+..++ .++++.|+..+.+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~----------- 144 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-------LGIVELLVSLGADVN----------- 144 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC-------HHHHHHHHHHTCCTT-----------
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCC-----------
Confidence 999999999999999998753 256778889999999999998 788888888775533
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC-CCchHHHHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG-RNETAILIA 286 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~g~tpLh~A 286 (331)
.++. .|.||||+|
T Consensus 145 ------------------------------------------------------------------~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 145 ------------------------------------------------------------------AQEPCNGRTALHLA 158 (236)
T ss_dssp ------------------------------------------------------------------CCCTTTCCCHHHHH
T ss_pred ------------------------------------------------------------------CCCCCCCCCHHHHH
Confidence 2343 689999999
Q ss_pred HhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 287 AKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 287 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+..|+.+++++|++ .|++++.+|..|+||+|+|+.+++.++++
T Consensus 159 ~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~ 201 (236)
T 1ikn_D 159 VDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQ 201 (236)
T ss_dssp HHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred HHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHH
Confidence 99999999999998 69999999999999999999999888876
No 36
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=6.7e-36 Score=267.99 Aligned_cols=239 Identities=14% Similarity=0.183 Sum_probs=180.4
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccccCCccH----------HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHH
Q 043901 6 LSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAM 73 (331)
Q Consensus 6 L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~ 73 (331)
+..+...|+++.+..++...+ ...+.|+ +++ |+.. ++.... ..|+||||+|+..|+.++
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~~------~~~g~t~L~~Aa~~~~~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~ 140 (373)
T 2fo1_E 70 GNGNDFLGDFNHTNLQIPTEP------EPESPIKLHTEAAGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEK 140 (373)
T ss_dssp ------------------------------CCCHHHHHHHSSSCCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSC
T ss_pred CCCCCccccccccccccccCC------CCCCccHHHHHhcCCchHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHH
Confidence 345666788877766655432 2233444 455 4432 222333 689999999999999998
Q ss_pred HHHHH--------hcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHH
Q 043901 74 CHCTA--------SKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAF 145 (331)
Q Consensus 74 v~~Ll--------~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~ 145 (331)
+++|+ +.|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.++++
T Consensus 141 v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~ 216 (373)
T 2fo1_E 141 SEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMV 216 (373)
T ss_dssp CTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHH
Confidence 88887 77887 9999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhC---CcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCC
Q 043901 146 QIMRAY---PDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQF 222 (331)
Q Consensus 146 ~Ll~~~---~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (331)
+|++.+ .+ ++..|..|.||||+|+..+. ....++++.|+..+.+.......
T Consensus 217 ~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~----~~~~~~v~~Ll~~g~~~~~~~~~--------------------- 270 (373)
T 2fo1_E 217 YMLNSTKLKGD-IEELDRNGMTALMIVAHNEG----RDQVASAKLLVEKGAKVDYDGAA--------------------- 270 (373)
T ss_dssp HHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCS----TTHHHHHHHHHHHTCCSSCCSGG---------------------
T ss_pred HHHhcCccccC-hhhcCCCCCCHHHHHHHhCC----cchHHHHHHHHHCCCCccccccc---------------------
Confidence 999987 45 89999999999999999872 01178899998888665420000
Q ss_pred CCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhC
Q 043901 223 FPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302 (331)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 302 (331)
.. +.++..|.||||+|+..|+.++|++|++..
T Consensus 271 ------------------------------------~~------------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 302 (373)
T 2fo1_E 271 ------------------------------------RK------------DSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302 (373)
T ss_dssp ------------------------------------GT------------SSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred ------------------------------------cc------------CcccccCCCHHHHHHHhCCHHHHHHHHHhc
Confidence 00 345678999999999999999999999976
Q ss_pred CccccccccCCCcHHHHHHHcCccccccC
Q 043901 303 PVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 303 ~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+++++.+|..|+||||+|+.+|+.++|++
T Consensus 303 ~~~~n~~d~~g~TpL~~A~~~g~~~iv~~ 331 (373)
T 2fo1_E 303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMY 331 (373)
T ss_dssp CCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred CCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 79999999999999999999999999863
No 37
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4e-35 Score=249.36 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=165.5
Q ss_pred CCCchhhhhhccCCHH----HHHHHHhcCcccccc----cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccc---
Q 043901 57 GGNHGRKYIKPLGNEA----MCHCTASKDRELISV----RNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQ--- 122 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~--- 122 (331)
.|+||||+|+..|+.+ ++++|++.+.+ ++. .|..|.||||+|+.. |+.+++++|++.|+++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4889999999999997 55777778887 888 899999999999999 99999999999998761111
Q ss_pred -----cccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC-------------CccHhHHHhcCCCcccccccchh
Q 043901 123 -----CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN-------------GLTRLHILASKPTAFKRGSRLGL 184 (331)
Q Consensus 123 -----~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~A~~~~~~~~~~~~~~~ 184 (331)
.+|..|.||||+|+..|+.+++++|++.|++ ++.++.. |.||||+|+..++ .++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-------~~~ 151 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ-------WDV 151 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC-------HHH
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCC-------HHH
Confidence 2347899999999999999999999999998 9988876 9999999999998 799
Q ss_pred HHHHHh---hhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhc
Q 043901 185 FDRIIH---YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIK 261 (331)
Q Consensus 185 ~~~li~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~ 261 (331)
++.|+. .+.++
T Consensus 152 v~~Ll~~~~~ga~~------------------------------------------------------------------ 165 (256)
T 2etb_A 152 VTYLLENPHQPASL------------------------------------------------------------------ 165 (256)
T ss_dssp HHHHHHCSSCCCCT------------------------------------------------------------------
T ss_pred HHHHHhccccCCCc------------------------------------------------------------------
Confidence 999988 55432
Q ss_pred hhhHHHHHhhhhccCCCCchHHHHHHh--cChHH-------HHHHHHhhCCccc-------cccccCCCcHHHHHHHcCc
Q 043901 262 KVQGLKFMEKKDQQSGRNETAILIAAK--MGVAE-------MVKKILDTFPVAM-------QDMDSEKKNLVLLAVENRQ 325 (331)
Q Consensus 262 ~~~~~~~l~~~~~~~~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~~-------~~~d~~g~t~l~~A~~~~~ 325 (331)
+.+|..|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|++.|+
T Consensus 166 -----------n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 166 -----------EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp -----------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred -----------CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 3456789999999999 88888 9999999 69999 9999999999999999999
Q ss_pred cccccC
Q 043901 326 TSIYKL 331 (331)
Q Consensus 326 ~~iv~l 331 (331)
.+++++
T Consensus 234 ~~~v~~ 239 (256)
T 2etb_A 234 IEIFRH 239 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
No 38
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=6e-34 Score=226.23 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=144.3
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
++|+.||+.|+.++|++|++.|++ +|.+|..|.||||+|+..++.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~---~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch---hhhccCCCCHHHHHHHcC
Confidence 479999999999999999999998 9999999999999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCcc
Q 043901 140 YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKC 219 (331)
Q Consensus 140 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (331)
+.+++++|+++|++ ++.+|..|+||||+|+..++ .++++.|+..+.+.
T Consensus 82 ~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~-------~~~v~~Ll~~gad~------------------------ 129 (169)
T 4gpm_A 82 HKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGH-------KEVVKLLISKGADV------------------------ 129 (169)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT------------------------
T ss_pred CHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCc------------------------
Confidence 99999999999998 99999999999999999999 79999998877553
Q ss_pred CCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHH
Q 043901 220 GQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKIL 299 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 299 (331)
+.+|..|+||||+|+..|+.+++++|+
T Consensus 130 -----------------------------------------------------~~~d~~G~TpL~~A~~~g~~~iv~~Ll 156 (169)
T 4gpm_A 130 -----------------------------------------------------NTSDSDGRTPLDLAREHGNEEVVKLLE 156 (169)
T ss_dssp -----------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345668999999999999999999999
Q ss_pred hhCCccccc
Q 043901 300 DTFPVAMQD 308 (331)
Q Consensus 300 ~~~~~~~~~ 308 (331)
+ .|++++.
T Consensus 157 ~-~GA~ie~ 164 (169)
T 4gpm_A 157 K-QGGWLEH 164 (169)
T ss_dssp T-C------
T ss_pred H-CCCCcCC
Confidence 9 7999864
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4e-34 Score=247.09 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=183.0
Q ss_pred HHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceeccCCCchhhhhhccCCHHHHHH
Q 043901 9 FAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHC 76 (331)
Q Consensus 9 a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ 76 (331)
++..++.+.+++++.... .......+.|| +++ |++.+ .+ ++. .+|.||||+|+..|+.+++++
T Consensus 6 ~i~~~~~~~v~~lL~~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~-~~~-~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAG-AL-KNL-LENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp TGGGCCHHHHHHHHHSTT--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-GG-GSC-CTTCCHHHHHTTSSSCHHHHH
T ss_pred HHHhcCHHHHHHHHHhCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CC-CCC-CCCCCHHHHHHHcCCHHHHHH
Confidence 456677777788776542 23333444666 777 77777 22 222 369999999999999999999
Q ss_pred HHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCC-CcHHHHHHhcCCHHHHHHHHHhCCccc
Q 043901 77 TASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNG-ETILHSAISGEYFSIAFQIMRAYPDLV 155 (331)
Q Consensus 77 Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~~~~Ll~~~~~~~ 155 (331)
|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++.|+. .
T Consensus 81 Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~-~ 155 (285)
T 3kea_A 81 LLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL---MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-T 155 (285)
T ss_dssp HHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG---GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT-T
T ss_pred HHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC---CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc-c
Confidence 9999998 9999999999999999999999999999999998 9999999 7999999999999999999999987 3
Q ss_pred ccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHH
Q 043901 156 NSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFW 235 (331)
Q Consensus 156 ~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (331)
... ..|.||||+|+..++ .++++.|+..+.+..
T Consensus 156 ~~~-~~g~t~L~~A~~~g~-------~~~v~~Ll~~gad~n--------------------------------------- 188 (285)
T 3kea_A 156 FDL-AILLSCIHITIKNGH-------VDMMILLLDYMTSTN--------------------------------------- 188 (285)
T ss_dssp CCC-STHHHHHHHHHHTTC-------HHHHHHHHHHHHHTC---------------------------------------
T ss_pred ccc-cCCccHHHHHHHcCh-------HHHHHHHHHcCCCCC---------------------------------------
Confidence 221 289999999999999 799999988876533
Q ss_pred HHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchH-HHHHHhcChHHHHHHHHhhCCccccccccCCC
Q 043901 236 LLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETA-ILIAAKMGVAEMVKKILDTFPVAMQDMDSEKK 314 (331)
Q Consensus 236 ~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tp-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 314 (331)
.++..|+|| ||+|+..|+.+++++|++ .|++++.+|.
T Consensus 189 --------------------------------------~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~--- 226 (285)
T 3kea_A 189 --------------------------------------TNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL--- 226 (285)
T ss_dssp --------------------------------------TTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG---
T ss_pred --------------------------------------cccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh---
Confidence 346679998 999999999999999999 6999998883
Q ss_pred cHHHHHHHcCcccccc
Q 043901 315 NLVLLAVENRQTSIYK 330 (331)
Q Consensus 315 t~l~~A~~~~~~~iv~ 330 (331)
.|+..|+.++++
T Consensus 227 ----~a~~~~~~~iv~ 238 (285)
T 3kea_A 227 ----ENVLLDDAEIAK 238 (285)
T ss_dssp ----GGGTTTCHHHHH
T ss_pred ----hhhhcCCHHHHH
Confidence 556677877775
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=235.10 Aligned_cols=203 Identities=15% Similarity=0.105 Sum_probs=168.8
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++||.|++.|+.+.++.+++..+ ..++.. ..|.||||+|+..|+.+++++|++.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g-----------------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEG-----------------------CEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTC-----------------------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcC-----------------------CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5689999999999999999998632 224455 8899999999999999999999999
Q ss_pred Ccccc----cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC-------------CCCcHHHHHHhcCCHHH
Q 043901 81 DRELI----SVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKN-------------NGETILHSAISGEYFSI 143 (331)
Q Consensus 81 ~~~~~----~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~ 143 (331)
+++.. +..|..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..|+.++
T Consensus 60 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 136 (232)
T 2rfa_A 60 APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV---SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136 (232)
T ss_dssp CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHH
T ss_pred CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC---CcccCCcceeecccccccCCCCHHHHHHHcCCHHH
Confidence 98722 667889999999999999999999999999998 66654 79999999999999999
Q ss_pred HHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhH----HHHHhhhcccCcCCCCCCCcccccccccCCCCcc
Q 043901 144 AFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLF----DRIIHYYKTKGEANDEESPECNRSISFSKNDDKC 219 (331)
Q Consensus 144 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (331)
+++|+++|++ ++.+|..|+||||+|+..++ .+++ +.|+..+.+... . +
T Consensus 137 v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~-------~~~~~~i~~~Ll~~g~~~~~----~-~--------------- 188 (232)
T 2rfa_A 137 VRLLIEHGAD-IRAQDSLGNTVLHILILQPN-------KTFACQMYNLLLSYDGGDHL----K-S--------------- 188 (232)
T ss_dssp HHHHHHTTCC-TTCCCTTSCCHHHHHHTCSC-------HHHHHHHHHHHHHTTCSCSS----C-C---------------
T ss_pred HHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC-------hHHHHHHHHHHHhcCCchhh----h-h---------------
Confidence 9999999998 99999999999999999998 5666 666666543220 0 0
Q ss_pred CCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHH
Q 043901 220 GQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKIL 299 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 299 (331)
.. +.+|..|+||||+|+..|+.+++++|+
T Consensus 189 ---------------------------------------~~------------~~~~~~g~tpl~~A~~~g~~~~v~~Ll 217 (232)
T 2rfa_A 189 ---------------------------------------LE------------LVPNNQGLTPFKLAGVEGNIVMFQHLM 217 (232)
T ss_dssp ---------------------------------------GG------------GCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred ---------------------------------------hh------------ccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 00 345778999999999999999999999
Q ss_pred hhCCccccccc
Q 043901 300 DTFPVAMQDMD 310 (331)
Q Consensus 300 ~~~~~~~~~~d 310 (331)
+ +|.......
T Consensus 218 ~-~g~~~~~~~ 227 (232)
T 2rfa_A 218 Q-KRKHIAAAH 227 (232)
T ss_dssp H-HHHHC----
T ss_pred h-cCccchhhh
Confidence 9 466654433
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.1e-35 Score=244.45 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=181.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.|+..|+.+.++.+++..+.. ...++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~--------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 68 (236)
T 1ikn_D 9 DSFLHLAIIHEEKALTMEVIRQVKGD--------------------LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68 (236)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-------------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC
T ss_pred CchhHHHHHcCChhHHHHHHHHhhcc--------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 46789999999887777776654321 1235666 88999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc---cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK---DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~---~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|++. ..++..+..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 69 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~ 146 (236)
T 1ikn_D 69 CD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQ 146 (236)
T ss_dssp CC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCC
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCC
Confidence 98 9999999999999999999999999999999752 22477888999999999999999999999999998 9999
Q ss_pred cC-CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHH
Q 043901 159 NE-NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLL 237 (331)
Q Consensus 159 ~~-~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (331)
+. .|.||||+|+..++ .++++.|+..+.+.
T Consensus 147 ~~~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~~------------------------------------------ 177 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQN-------PDLVSLLLKCGADV------------------------------------------ 177 (236)
T ss_dssp CTTTCCCHHHHHHHTTC-------HHHHHHHHTTTCCS------------------------------------------
T ss_pred CCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC------------------------------------------
Confidence 87 99999999999998 79999998876543
Q ss_pred HHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcccc--ccccCCCc
Q 043901 238 MKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQ--DMDSEKKN 315 (331)
Q Consensus 238 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~d~~g~t 315 (331)
+.++..|+||||+|+..|+.+++++|++ .|++.. .++..|.|
T Consensus 178 -----------------------------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~ 221 (236)
T 1ikn_D 178 -----------------------------------NRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEE 221 (236)
T ss_dssp -----------------------------------CCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTT
T ss_pred -----------------------------------CcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHH
Confidence 2346689999999999999999999999 688776 78999999
Q ss_pred HHHHHHHcC
Q 043901 316 LVLLAVENR 324 (331)
Q Consensus 316 ~l~~A~~~~ 324 (331)
|.+.+....
T Consensus 222 ~~~~~~~~~ 230 (236)
T 1ikn_D 222 SYDTESEFT 230 (236)
T ss_dssp CCCCC----
T ss_pred HHhhhcccc
Confidence 988765543
No 42
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=245.10 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=143.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCccc-------ccccCCCCCcHHHHHHhcCCH-HHHHHHHhcCCCccccccccCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDREL-------ISVRNNDSETPLFLAALHGNM-DAFLCLRSFNQAKDNRQCRKNN 127 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~A~~~~~~-~~~~~Ll~~g~~~~~~~~~~~~ 127 (331)
..+.+||+.|+..|+.++|++|++.++.. ++..+..|.||||+|+..+.. .++++|++.|+++ +.+|.+
T Consensus 9 ~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~~ 85 (269)
T 4b93_B 9 YREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQD 85 (269)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT---TCCCTT
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCCC
Confidence 45679999999999999999999988652 456778899999999988775 4889999999999 999999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccc
Q 043901 128 GETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECN 207 (331)
Q Consensus 128 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 207 (331)
|.||||+|+..|+.+++++|++.+++ ++.++..|.||++.|+..++ .++++.|+..+.++
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~-------~~~~~~Ll~~g~~~------------ 145 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGH-------FQVVKCLLDSNAKP------------ 145 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCS------------
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccCh-------HHHHHHHHHCCCCC------------
Confidence 99999999999999999999999998 99999999999999999998 78898888776543
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAA 287 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~ 287 (331)
+.+|..|+||||+|+
T Consensus 146 -----------------------------------------------------------------n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 146 -----------------------------------------------------------------NKKDLSGNTPLIYAC 160 (269)
T ss_dssp -----------------------------------------------------------------CCCCTTCCCHHHHHH
T ss_pred -----------------------------------------------------------------CCCCCCCCCHHHHHH
Confidence 344668999999999
Q ss_pred hcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 288 KMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 288 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.++|++
T Consensus 161 ~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~ 203 (269)
T 4b93_B 161 SGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVEL 203 (269)
T ss_dssp HTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence 9999999999999 799999999999999999999999999873
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.6e-32 Score=223.27 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=167.5
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++|+.|+..|+.+.++.++...+. .++.. ..|.||||+|+..|+.+++++|++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTY-----------------------QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTC-----------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCC-----------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 56899999999999999999987542 24445 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRS-FNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
|++ ++..|..|.||||+|+..|+.+++++|++ .++++ +.++..|.||||+|+..|+.+++++|++.|..+++.+|
T Consensus 62 g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 137 (201)
T 3hra_A 62 GAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL---NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137 (201)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT---TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccc---ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC
Confidence 998 99999999999999999999999999995 55666 99999999999999999999999999999955599999
Q ss_pred CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHH
Q 043901 160 ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMK 239 (331)
Q Consensus 160 ~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (331)
..|.||||+|+..+.. .....++++.|+..+.+.
T Consensus 138 ~~g~t~L~~A~~~~~~--~~~~~~~v~~Ll~~ga~~-------------------------------------------- 171 (201)
T 3hra_A 138 DFGYTALIEAVGLREG--NQLYQDIVKLLMENGADQ-------------------------------------------- 171 (201)
T ss_dssp TTSCCHHHHHHHSSCC--SHHHHHHHHHHHHTTCCT--------------------------------------------
T ss_pred CCCCCHHHHHHHhccc--hhhHHHHHHHHHHCCCCC--------------------------------------------
Confidence 9999999999988751 111246777777665442
Q ss_pred hchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHh
Q 043901 240 ALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILD 300 (331)
Q Consensus 240 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 300 (331)
+.+|..|.||||+|+..|+.+++++|++
T Consensus 172 ---------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 172 ---------------------------------SIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp ---------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ---------------------------------CccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 3456689999999999999999999998
No 44
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.4e-33 Score=252.09 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=167.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.++|++|++.|++ ++..|..|.||||+|+..|+.+++++|++.|+++ .+..|.||||+|
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~g~t~L~~A 91 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----CCBTTBCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----cccCCCCHHHHH
Confidence 7899999999999999999999999988 9999999999999999999999999999999966 345799999999
Q ss_pred HhcCCHHHHHHHHHh----CCccccc-----------------ccCCCccHhHHHhcCC--CcccccccchhHHHHHhhh
Q 043901 136 ISGEYFSIAFQIMRA----YPDLVNS-----------------VNENGLTRLHILASKP--TAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~g~t~l~~A~~~~--~~~~~~~~~~~~~~li~~~ 192 (331)
+..|+.+++++|++. +.. ++. .|..|.||||+|+..+ + .++++.|+..+
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-------~~~v~~Ll~~g 163 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY-------LEMIKILVQLG 163 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGG-------HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCch-------HHHHHHHHHcC
Confidence 999999999999999 666 665 8889999999999999 7 79999998887
Q ss_pred cccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh
Q 043901 193 KTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK 272 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (331)
.++
T Consensus 164 a~~----------------------------------------------------------------------------- 166 (364)
T 3ljn_A 164 ASP----------------------------------------------------------------------------- 166 (364)
T ss_dssp CCT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 553
Q ss_pred hccCCCCchHHHHHHhcChHHHHHHHHhhCCcc-----ccccccCCCcHHHHHHHcCccccccC
Q 043901 273 DQQSGRNETAILIAAKMGVAEMVKKILDTFPVA-----MQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 273 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+.+|..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+.+|+.++|++
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 229 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 2346689999999999999999999999 5887 99999999999999999999999863
No 45
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.6e-32 Score=226.09 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=171.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++... + .+.. ..|.||||+|+..|+.+++++|++.+
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~-----------------------~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASA-----------------------D-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTC-----------------------C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CchHHHHHHcCCHHHHHHHHHcCC-----------------------C-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 467888888888888888887642 2 3445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
+..++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+|..
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC---cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 8669999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|.||||+|+..++ .++++.|+..+.+.
T Consensus 158 g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~---------------------------------------------- 184 (223)
T 2f8y_A 158 EETPLFLAAREGS-------YETAKVLLDHFANR---------------------------------------------- 184 (223)
T ss_dssp CCCHHHHHHHHTC-------HHHHHHHHHTTCCT----------------------------------------------
T ss_pred CcCHHHHHHHcCC-------HHHHHHHHHcCCCC----------------------------------------------
Confidence 9999999999998 79999998887543
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccc
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAM 306 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 306 (331)
+.++..|.||||+|++.|+.+++++|++ +|+..
T Consensus 185 -------------------------------~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~ 217 (223)
T 2f8y_A 185 -------------------------------DITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR 217 (223)
T ss_dssp -------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred -------------------------------ccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence 2346679999999999999999999999 67754
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.6e-33 Score=239.36 Aligned_cols=204 Identities=16% Similarity=0.138 Sum_probs=166.6
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCccee----c-cCCCchhhhhhcc---CCHH
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYI----R-LGGNHGRKYIKPL---GNEA 72 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~----~-~~g~t~Lh~A~~~---g~~~ 72 (331)
++.++||.||..|+.+.++.+++. +++.+ .+ ++. + ..|.||||+|+.. |+.+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~------------------l~~~g-~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~ 60 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEY------------------LRWNS-KY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHH------------------HHHHT-CC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHH------------------HHHcC-CC-cccccccCCCCCCCHHHHHHHccccchHH
Confidence 467899999999999876655542 12222 22 333 4 8899999999999 9999
Q ss_pred HHHHHHhcCcccccc-----------cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC-------------C
Q 043901 73 MCHCTASKDRELISV-----------RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN-------------G 128 (331)
Q Consensus 73 ~v~~Ll~~~~~~~~~-----------~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~-------------g 128 (331)
++++|++.|++ ++. .|..|.||||+|+..|+.+++++|++.|+++ +.++.. |
T Consensus 61 ~v~~Ll~~g~~-~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~g 136 (256)
T 2etb_A 61 CIMPLLQIDKD-SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV---HLRACGRFFQKHQGTCFYFG 136 (256)
T ss_dssp THHHHHHHHHH-TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCCSGGGSCCSSSCCCSC
T ss_pred HHHHHHhcCCc-ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcccccccccccccccccCC
Confidence 99999999876 543 3477999999999999999999999999998 888776 9
Q ss_pred CcHHHHHHhcCCHHHHHHHHH---hCCcccccccCCCccHhHHHhc--CCCcccccccch-------hHHHHHhhhcccC
Q 043901 129 ETILHSAISGEYFSIAFQIMR---AYPDLVNSVNENGLTRLHILAS--KPTAFKRGSRLG-------LFDRIIHYYKTKG 196 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~--~~~~~~~~~~~~-------~~~~li~~~~~~~ 196 (331)
.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+. .++ .+ +++.|+..+.+..
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~-------~~~~~~~~~iv~~Ll~~ga~~~ 208 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNS-------PENSALVIHMYDGLLQMGARLC 208 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSC-------HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCC-------chhhHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999 8888 99999999999999998 555 45 7788877776643
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
.... .. +.+|
T Consensus 209 ~~~~----------------------------------------------------------~~------------~~~d 218 (256)
T 2etb_A 209 PTVQ----------------------------------------------------------LE------------EISN 218 (256)
T ss_dssp TTCC----------------------------------------------------------GG------------GCCC
T ss_pred cccc----------------------------------------------------------cc------------cccC
Confidence 1000 00 3457
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCcccc
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQ 307 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 307 (331)
..|+||||+|+..|+.+++++|+++ |.+..
T Consensus 219 ~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~ 248 (256)
T 2etb_A 219 HQGLTPLKLAAKEGKIEIFRHILQR-EFSGA 248 (256)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhC-CCCCC
Confidence 7899999999999999999999994 66543
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=8.2e-34 Score=249.89 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=159.6
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISV-RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
+.+|.|+..+..+++++|++.|.+ +|. +|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKS 174 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHh
Confidence 345888888889999999999998 999 8999999999999999999999999999999 99999999999999999
Q ss_pred CC---HHHHHHHHHhCCcccccccCCCccHhHHHhc----CCCcccccccchhHHHHHhhhcccCcCCCCCCCccccccc
Q 043901 139 EY---FSIAFQIMRAYPDLVNSVNENGLTRLHILAS----KPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSIS 211 (331)
Q Consensus 139 ~~---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~----~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 211 (331)
|+ .++++.|++.+..+++.+|..|+||||+|+. .++ .++++.++..+...........-.+. ..
T Consensus 175 g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-------~~~v~~Ll~~~~~~~~~~~~~~i~~~--~~ 245 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-------SAAAKYYLDILMGWIVKKQNRPIQSG--TN 245 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-------HHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-------HHHHHHHHHHHHHHHhcccchHHHhh--hh
Confidence 98 7888888888755599999999999999998 777 78999988765432110000000000 00
Q ss_pred ccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh--hccCCCCchHHHHHHhc
Q 043901 212 FSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK--DQQSGRNETAILIAAKM 289 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~g~tpLh~A~~~ 289 (331)
..+.+.. .....+.++++. +.. +++|.+. +.+|..|+||||+|+..
T Consensus 246 ~~g~~~~---~~~~~g~t~L~~-----------------------a~~------~~~Ll~~~~n~~d~~G~TpLh~A~~~ 293 (327)
T 1sw6_A 246 EKESKPN---DKNGERKDSILE-----------------------NLD------LKWIIANMLNAQDSNGDTCLNIAARL 293 (327)
T ss_dssp -----------------CHHHH-----------------------HCS------HHHHHHHTTTCCCTTSCCHHHHHHHH
T ss_pred cccCCcc---cccccCCChhHH-----------------------HHH------HHHHHHhCCCCCCCCCCCHHHHHHHc
Confidence 0000000 000001111111 000 2222221 67788999999999999
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
|+.++|++|++ .|+|++.+|..|+||||+|+++|
T Consensus 294 g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 294 GNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999 69999999999999999999875
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.7e-32 Score=217.86 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=144.3
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
++|+.|++.|+.+.|+.|++.+.+ ++.+ ..|.||||+|+..++.+++++|++.|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad------------------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga 61 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD------------------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 579999999999999999987432 4556 889999999999999999999999999
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCC
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENG 162 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 162 (331)
+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|
T Consensus 62 d-~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G 136 (169)
T 4gpm_A 62 D-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDG 136 (169)
T ss_dssp C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred c-hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence 8 9999999999999999999999999999999999 99999999999999999999999999999998 99999999
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
+||||+|+..++ .++++.|++.+++++
T Consensus 137 ~TpL~~A~~~g~-------~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 137 RTPLDLAREHGN-------EEVVKLLEKQGGWLE 163 (169)
T ss_dssp CCHHHHHHHTTC-------HHHHHHHHTC-----
T ss_pred CCHHHHHHHcCC-------HHHHHHHHHCCCCcC
Confidence 999999999999 799999999998876
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=8.7e-34 Score=243.43 Aligned_cols=189 Identities=15% Similarity=0.141 Sum_probs=163.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhc----Cccccc----ccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCcc-----
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASK----DRELIS----VRNNDSETPLFLAALH---GNMDAFLCLRSFNQAKD----- 119 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~----~~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~----- 119 (331)
..|.||||+|+..|+.++|+.|++. +.+ ++ ..|..|.||||+|+.. |+.+++++|++.|+++.
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 7899999999999999999999874 443 43 4588999999999987 99999999999987531
Q ss_pred ---ccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC--------------CCccHhHHHhcCCCcccccccc
Q 043901 120 ---NRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE--------------NGLTRLHILASKPTAFKRGSRL 182 (331)
Q Consensus 120 ---~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~~~~~~~ 182 (331)
.+..+|..|.||||+|+..|+.+++++|+++|++ ++.++. .|.||||+|+..++ .
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-------~ 161 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ-------L 161 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC-------H
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCC-------H
Confidence 1122567999999999999999999999999998 888887 79999999999998 7
Q ss_pred hhHHHHHh---hhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhh
Q 043901 183 GLFDRIIH---YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPY 259 (331)
Q Consensus 183 ~~~~~li~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~ 259 (331)
++++.|+. .+.++
T Consensus 162 ~~v~~Ll~~~~~gad~---------------------------------------------------------------- 177 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADI---------------------------------------------------------------- 177 (273)
T ss_dssp HHHHHHHHCSSCCCCT----------------------------------------------------------------
T ss_pred HHHHHHHhcccCCCCc----------------------------------------------------------------
Confidence 99999988 55432
Q ss_pred hchhhHHHHHhhhhccCCCCchHHHHHHhcCh---------HHHHHHHHhhCCcccc-------ccccCCCcHHHHHHHc
Q 043901 260 IKKVQGLKFMEKKDQQSGRNETAILIAAKMGV---------AEMVKKILDTFPVAMQ-------DMDSEKKNLVLLAVEN 323 (331)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~-------~~d~~g~t~l~~A~~~ 323 (331)
+.+|..|+||||+|+..|+ .+++++|++ .|++++ .+|..|+||||+|+++
T Consensus 178 -------------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 178 -------------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp -------------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred -------------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHh
Confidence 3456789999999999988 899999999 599996 4899999999999999
Q ss_pred CccccccC
Q 043901 324 RQTSIYKL 331 (331)
Q Consensus 324 ~~~~iv~l 331 (331)
|+.+++++
T Consensus 244 g~~~iv~~ 251 (273)
T 2pnn_A 244 GKIGVLAY 251 (273)
T ss_dssp TCHHHHHH
T ss_pred ChHHHHHH
Confidence 99999863
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.9e-33 Score=239.31 Aligned_cols=226 Identities=14% Similarity=0.090 Sum_probs=163.8
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhcc---CCHHHHHHH
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPL---GNEAMCHCT 77 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~---g~~~~v~~L 77 (331)
+..+||.||..|+.+.++.+++....... +. .+....+ ..|.||||+|+.. |+.+++++|
T Consensus 13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------~~----------~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L 76 (273)
T 2pnn_A 13 DRRSIFDAVAQSNCQELESLLPFLQRSKK------RL----------TDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76 (273)
T ss_dssp CHHHHHHHHHTTCSSTTTTHHHHHHHSCC------CT----------TSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHHHhhccc------cc----------CCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence 45789999999999999988874211000 00 0112234 7899999999976 999999999
Q ss_pred HhcCccc------ccc----cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC--------------CCCcHHH
Q 043901 78 ASKDREL------ISV----RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKN--------------NGETILH 133 (331)
Q Consensus 78 l~~~~~~------~~~----~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~--------------~g~t~Lh 133 (331)
++.|++. ++. .|..|.||||+|+..|+.+++++|++.|+++ +.++. .|.||||
T Consensus 77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~~g~tpL~ 153 (273)
T 2pnn_A 77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV---QAAANGDFFKKTKGRPGFYFGELPLS 153 (273)
T ss_dssp HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCBCSGGGSSCSSSCCCCSCBSHHH
T ss_pred HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc---CccccccccccccccccccCCCCHHH
Confidence 9987641 222 5678999999999999999999999999998 88876 7999999
Q ss_pred HHHhcCCHHHHHHHHH---hCCcccccccCCCccHhHHHhcCCCccccc--ccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 134 SAISGEYFSIAFQIMR---AYPDLVNSVNENGLTRLHILASKPTAFKRG--SRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++..... ...++++.|+..+.++.....
T Consensus 154 ~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~-------- 224 (273)
T 2pnn_A 154 LAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-------- 224 (273)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC--------
T ss_pred HHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc--------
Confidence 9999999999999999 8887 9999999999999999977521000 002556666666554331000
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHh
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAK 288 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~ 288 (331)
. .+.+|..|+||||+|+.
T Consensus 225 --------------------------------------------------~------------~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 225 --------------------------------------------------L------------EEITNRKGLTPLALAAS 242 (273)
T ss_dssp --------------------------------------------------G------------GGCCCTTSCCHHHHHHH
T ss_pred --------------------------------------------------c------------ccccCCCCCCHHHHHHH
Confidence 0 03467789999999999
Q ss_pred cChHHHHHHHHhhCCc-cccccccCCCcHHH
Q 043901 289 MGVAEMVKKILDTFPV-AMQDMDSEKKNLVL 318 (331)
Q Consensus 289 ~g~~~~v~~Ll~~~~~-~~~~~d~~g~t~l~ 318 (331)
.|+.+++++|+++ |+ |+......+++|-+
T Consensus 243 ~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 243 SGKIGVLAYILQR-EIHEPECRHAAAHHHHH 272 (273)
T ss_dssp TTCHHHHHHHHHH-HTC--------------
T ss_pred hChHHHHHHHHHC-CCCCchhhhhhhhhccC
Confidence 9999999999994 77 88888887777754
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=2.8e-33 Score=238.44 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=162.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHh----cCcccccccC----CCCCcHHHHHH---hcCCHHHHHHHHhcCCCc------
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTAS----KDRELISVRN----NDSETPLFLAA---LHGNMDAFLCLRSFNQAK------ 118 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d----~~g~tpLh~A~---~~~~~~~~~~Ll~~g~~~------ 118 (331)
..|+|+||.|+..|+.++++.|++ .+.+ ++..+ ..|.||||+|+ ..|+.+++++|++.|++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 457899999999999996555555 8877 77665 67999999999 679999999999998653
Q ss_pred --cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc--------------CCCccHhHHHhcCCCcccccccc
Q 043901 119 --DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN--------------ENGLTRLHILASKPTAFKRGSRL 182 (331)
Q Consensus 119 --~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~~~ 182 (331)
..++..|..|.||||+|+..|+.+++++|++.|++ ++.++ ..|.||||+|+..++ .
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-------~ 153 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-------P 153 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC-------H
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCC-------H
Confidence 12355566999999999999999999999999998 99888 689999999999999 7
Q ss_pred hhHHHHHh---hhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhh
Q 043901 183 GLFDRIIH---YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPY 259 (331)
Q Consensus 183 ~~~~~li~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~ 259 (331)
++++.|+. .+.++
T Consensus 154 ~~v~~Ll~~~~~ga~~---------------------------------------------------------------- 169 (260)
T 3jxi_A 154 HIVHYLTENGHKQADL---------------------------------------------------------------- 169 (260)
T ss_dssp HHHHHHHHCSSCCCCT----------------------------------------------------------------
T ss_pred HHHHHHHhccccCCCC----------------------------------------------------------------
Confidence 99999988 44432
Q ss_pred hchhhHHHHHhhhhccCCCCchHHHHHHhcCh---------HHHHHHHHhhCCccc-------cccccCCCcHHHHHHHc
Q 043901 260 IKKVQGLKFMEKKDQQSGRNETAILIAAKMGV---------AEMVKKILDTFPVAM-------QDMDSEKKNLVLLAVEN 323 (331)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~-------~~~d~~g~t~l~~A~~~ 323 (331)
+.+|..|+||||+|+..|+ .+++++|++ .|+++ +.+|..|+||||+|+++
T Consensus 170 -------------~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 170 -------------RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp -------------TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred -------------cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHc
Confidence 3456789999999998887 799999999 69998 78999999999999999
Q ss_pred CccccccC
Q 043901 324 RQTSIYKL 331 (331)
Q Consensus 324 ~~~~iv~l 331 (331)
|+.+++++
T Consensus 236 g~~~~v~~ 243 (260)
T 3jxi_A 236 GKIGIFQH 243 (260)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 99999873
No 52
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=3.3e-32 Score=217.28 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=151.3
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
+.||||+|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHH
Confidence 5799999999999999999999999879999999999999999999999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCC
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDD 217 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (331)
.|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 79 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~---------------------- 128 (172)
T 3v30_A 79 GGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNH-------VKCVEALLARGADL---------------------- 128 (172)
T ss_dssp TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT----------------------
T ss_pred CCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCc----------------------
Confidence 9999999999999998 99999999999999999998 79999998876542
Q ss_pred ccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHH
Q 043901 218 KCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
+.++..|.||||+|+..|+.+++++
T Consensus 129 -------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 129 -------------------------------------------------------TTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp -------------------------------------------------------TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred -------------------------------------------------------cccCCCCCCHHHHHHHhCcHHHHHH
Confidence 2346689999999999999999999
Q ss_pred HHhhCCccccccccCCCcH
Q 043901 298 ILDTFPVAMQDMDSEKKNL 316 (331)
Q Consensus 298 Ll~~~~~~~~~~d~~g~t~ 316 (331)
|++ +++++...+..|.||
T Consensus 154 L~~-~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IEN-HILKLFQSNLVPADP 171 (172)
T ss_dssp HHH-HHHHHSCC-------
T ss_pred HHH-HHHHHhcccCCCCCC
Confidence 999 699999999999887
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=2.4e-32 Score=232.62 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=164.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHH----cCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhh---ccCCHH
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYE----NNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIK---PLGNEA 72 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~----~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~---~~g~~~ 72 (331)
+++++||.||+.|+.+.++.+++ ...... ...... ..|.||||+|+ ..|+.+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~--------------------~~~~~~~~~g~t~L~~A~~~~~~g~~~ 63 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLT--------------------DEEFREPSTGKTCLPKALLNLSAGRND 63 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTT--------------------SGGGSCTTTCCCHHHHHHTSCBTTBCT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcc--------------------hhhhhccCCCCcHHHHHHHHhhcCCHH
Confidence 36789999999999998877776 322211 101122 67999999999 789999
Q ss_pred HHHHHHhcCcc----------cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc--------------CCC
Q 043901 73 MCHCTASKDRE----------LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK--------------NNG 128 (331)
Q Consensus 73 ~v~~Ll~~~~~----------~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~--------------~~g 128 (331)
++++|++.+++ .++..|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|
T Consensus 64 ~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~~g 140 (260)
T 3jxi_A 64 TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV---HAQARGRFFQPKDEGGYFYFG 140 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCEECCCSSSCCCCSCCSC
T ss_pred HHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc---CccccccccCcccccccccCC
Confidence 99999998753 14445668999999999999999999999999998 8887 689
Q ss_pred CcHHHHHHhcCCHHHHHHHHH---hCCcccccccCCCccHhHHHhcCCCcccc--cccchhHHHHHhhhcccCcCCCCCC
Q 043901 129 ETILHSAISGEYFSIAFQIMR---AYPDLVNSVNENGLTRLHILASKPTAFKR--GSRLGLFDRIIHYYKTKGEANDEES 203 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~ 203 (331)
.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++.... ....++++.|+..+.+......
T Consensus 141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~--- 216 (260)
T 3jxi_A 141 ELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--- 216 (260)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC---
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc---
Confidence 999999999999999999999 8887 999999999999999986652100 0012566666666655431000
Q ss_pred CcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHH
Q 043901 204 PECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAI 283 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpL 283 (331)
.. +.+|..|+|||
T Consensus 217 -------------------------------------------------------~~------------~~~d~~g~tpL 229 (260)
T 3jxi_A 217 -------------------------------------------------------LE------------ALLNNDGLSPL 229 (260)
T ss_dssp -------------------------------------------------------GG------------GCCCTTSCCHH
T ss_pred -------------------------------------------------------hh------------hcccCCCCCHH
Confidence 00 34677899999
Q ss_pred HHHHhcChHHHHHHHHhhCCccc
Q 043901 284 LIAAKMGVAEMVKKILDTFPVAM 306 (331)
Q Consensus 284 h~A~~~g~~~~v~~Ll~~~~~~~ 306 (331)
|+|+..|+.+++++|+++ |.+.
T Consensus 230 ~~A~~~g~~~~v~~Ll~~-g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRR-EIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHH
T ss_pred HHHHHcCCHHHHHHHHHh-CCCc
Confidence 999999999999999995 6554
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=1.4e-32 Score=236.17 Aligned_cols=187 Identities=12% Similarity=0.151 Sum_probs=170.0
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcc-cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-CccccccccCCCCcHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRE-LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ-AKDNRQCRKNNGETILHS 134 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~g~t~Lh~ 134 (331)
.+++++|.|+..|+.+.++.+++.+.+ .+|..|..|.||||+|+..|+.+++++|++.|+ ++ +..+..|.||||+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIML 151 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHH
Confidence 357899999999999999999987643 388899999999999999999999999999998 76 9999999999999
Q ss_pred HH-----hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccccc
Q 043901 135 AI-----SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRS 209 (331)
Q Consensus 135 A~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 209 (331)
|+ ..++.+++++|++.|.. .+..+..|.||||+|+..++ .++++.|+..+.++
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~-------~~~v~~Ll~~gad~-------------- 209 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGR-------VDVVKALLACEADV-------------- 209 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT--------------
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCC--------------
Confidence 99 67899999999999987 88889999999999999998 79999998887553
Q ss_pred ccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhc
Q 043901 210 ISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKM 289 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~ 289 (331)
+.+|..|+||||+|+..
T Consensus 210 ---------------------------------------------------------------n~~d~~G~TpLh~A~~~ 226 (276)
T 4hbd_A 210 ---------------------------------------------------------------NVQDDDGSTALMCACEH 226 (276)
T ss_dssp ---------------------------------------------------------------TCCCTTSCCHHHHHHHH
T ss_pred ---------------------------------------------------------------CCCCCCCCCHHHHHHHC
Confidence 34566899999999999
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|+.+++++|++..|++++.+|..|+||||+|+++|+.+++++
T Consensus 227 g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~ 268 (276)
T 4hbd_A 227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASM 268 (276)
T ss_dssp TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999996799999999999999999999999999863
No 55
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.6e-34 Score=238.10 Aligned_cols=195 Identities=12% Similarity=-0.019 Sum_probs=161.6
Q ss_pred HHhhhC-CCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccc
Q 043901 43 LQQQLG-KPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDN 120 (331)
Q Consensus 43 Ll~~~~-~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~ 120 (331)
|++.+. ....+.. ..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-- 80 (229)
T 2vge_A 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV-- 80 (229)
T ss_dssp ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--
Confidence 566662 1222333 6788999999999999999999999997 9999999999999999999999999999999998
Q ss_pred cccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc-CCCccHhHHH--hcCCCcccccccchhHHHHHhhhcccCc
Q 043901 121 RQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHIL--ASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 121 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
+.+|..|.||||+|+..|+.+++++|++.|++ ++.++ ..|.||||+| +..++ .++++.|+..+.+..
T Consensus 81 -n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~-------~~~v~~Ll~~ga~~~- 150 (229)
T 2vge_A 81 -NSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGY-------ADCATYLADVEQSMG- 150 (229)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTH-------HHHHHHHHHHHHHTT-
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcCh-------HHHHHHHHHcCCCcc-
Confidence 99999999999999999999999999999998 88886 6999999999 88888 799999998887644
Q ss_pred CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC
Q 043901 198 ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (331)
.++.
T Consensus 151 ----------------------------------------------------------------------------~~~~ 154 (229)
T 2vge_A 151 ----------------------------------------------------------------------------LMNS 154 (229)
T ss_dssp ----------------------------------------------------------------------------TSGG
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 2234
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCcc--ccccccCCCcHHHHHHHcCcccccc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVA--MQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
.|.||+|.++..+.. ++|++ .|++ ++.+|..|+||||+|+++|+.++|+
T Consensus 155 ~~~~~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 155 GAVYALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp GEEEESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred CchHHHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCcceee
Confidence 577777755544432 45676 5877 6778999999999999999999886
No 56
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.8e-31 Score=223.90 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=168.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccc-cCCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCR-KNNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~~g~t~Lh~ 134 (331)
..|.||||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|++.|+++ +.. +..|.||||+
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV---DQLGGDLNSTPLHW 82 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCBTTTTBCHHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc---hhhcCCcCCChhHH
Confidence 6789999999999999999999999988 9999999999999999999999999999999987 544 4559999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
|+..|+.+++++|++.|++ ++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~~~~~------------------- 135 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGH-------TSIVAYLIAKGQDV------------------- 135 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT-------------------
T ss_pred HHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCH-------HHHHHHHHhcCCCc-------------------
Confidence 9999999999999999998 99999999999999999998 78999988876442
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh-HH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV-AE 293 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~-~~ 293 (331)
+.++..|.||||+|+..++ .+
T Consensus 136 ----------------------------------------------------------~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 136 ----------------------------------------------------------DMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp ----------------------------------------------------------TCCCTTSCCHHHHHHHHCCSST
T ss_pred ----------------------------------------------------------cccCCCCCcHHHHHHHhCChHH
Confidence 2345679999999997765 89
Q ss_pred HHHHHHhhCCcccccccc-CCCcHHHHHHHcCcccccc
Q 043901 294 MVKKILDTFPVAMQDMDS-EKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 294 ~v~~Ll~~~~~~~~~~d~-~g~t~l~~A~~~~~~~iv~ 330 (331)
++++|++ .+++++..+. .|.||||+|+.+|+.++++
T Consensus 158 ~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 158 PTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp THHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence 9999999 7999999997 9999999999999999886
No 57
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.5e-31 Score=209.91 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=145.0
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
...||||.|+..|+.+++++|++.+++ ++..|..|.||||+|+. |+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP---DLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH
Confidence 356899999999999999999999988 99999999999999999 9999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+..
T Consensus 79 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~-------------------- 130 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGH-------LRVVEFLVKHTASNV-------------------- 130 (162)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHSCCCT--------------------
T ss_pred HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHccCCCC--------------------
Confidence 99999999999999988 99999999999999999998 799999988876522
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 131 --------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~~ 154 (162)
T 1ihb_A 131 --------------------------------------------------------GHRNHKGDTACDLARLYGRNEVVS 154 (162)
T ss_dssp --------------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCcHHHHHHHcCCHHHHH
Confidence 345668999999999999999999
Q ss_pred HHHhhCCcc
Q 043901 297 KILDTFPVA 305 (331)
Q Consensus 297 ~Ll~~~~~~ 305 (331)
+|++ .|+|
T Consensus 155 ~Ll~-~GAd 162 (162)
T 1ihb_A 155 LMQA-NGAG 162 (162)
T ss_dssp HHHH-TC--
T ss_pred HHHH-hCCC
Confidence 9999 6775
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.3e-30 Score=207.02 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=145.5
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHHH
Confidence 589999999999999999999999987 9999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~--------------------- 128 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNH-------VKCVKMLLESGADP--------------------- 128 (167)
T ss_dssp HHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------------
T ss_pred HcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC---------------------
Confidence 99999999999999998 99999999999999999998 78888888776542
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 129 --------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 129 --------------------------------------------------------TIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp --------------------------------------------------------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCCHHHHHHHcCcHHHHH
Confidence 234567999999999999999999
Q ss_pred HHHhhCCccc
Q 043901 297 KILDTFPVAM 306 (331)
Q Consensus 297 ~Ll~~~~~~~ 306 (331)
+|+++ +.++
T Consensus 153 ~L~~~-~~~~ 161 (167)
T 3v31_A 153 VIESH-LLKL 161 (167)
T ss_dssp HHHHH-HHHH
T ss_pred HHHHH-HHHH
Confidence 99984 5443
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=4.6e-31 Score=214.45 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=87.4
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET 130 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t 130 (331)
.+.+ ..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKT 103 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTSCC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCc
Confidence 3444 6677777777777777777777776665 6666777777777777777777777777777766 666677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
|||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g 157 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGR-------SEIVKKLLELG 157 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHCC
Confidence 77777777777777777776666 66666666666666666665 45666555544
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=8.1e-31 Score=213.02 Aligned_cols=99 Identities=19% Similarity=0.121 Sum_probs=63.2
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCcc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLT 164 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 164 (331)
+|.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT 103 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence 4455666666666666666666666666666665 66666666666666666666666666666665 6666666666
Q ss_pred HhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 165 RLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 165 ~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
|||+|+..++ .++++.|+..+.+
T Consensus 104 ~L~~A~~~~~-------~~~v~~Ll~~g~~ 126 (192)
T 2rfm_A 104 PLMWSIIFGY-------SEMSYFLLEHGAN 126 (192)
T ss_dssp HHHHHHHHTC-------HHHHHHHHHTTCC
T ss_pred HHHHHHHcCC-------HHHHHHHHHCCCC
Confidence 6666666665 5666666655443
No 61
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.8e-31 Score=228.13 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=149.4
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHH-----hcCCHHHHHHHHhcCCCcccccccc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAA-----LHGNMDAFLCLRSFNQAKDNRQCRK 125 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~~ 125 (331)
++.. ..|.||||+|+..|+.+++++|++.|+..++..|..|.||||+|+ ..++.+++++|++.|.+. +..+
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~---~~~~ 180 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN---AKAS 180 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT---CCCT
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc---cccC
Confidence 5666 899999999999999999999999998559999999999999999 668899999999999988 8889
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHh-hhcccCcCCCCCCC
Q 043901 126 NNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIH-YYKTKGEANDEESP 204 (331)
Q Consensus 126 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~~~ 204 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++ .++++.|+. .+.+.
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~-------~~iv~~Ll~~~gad~--------- 243 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGH-------KEIAGLLLAVPSCDI--------- 243 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC-------HHHHHHHHTSTTCCT---------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCC-------HHHHHHHHhcCCCCC---------
Confidence 9999999999999999999999999998 99999999999999999998 799999887 44432
Q ss_pred cccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHH
Q 043901 205 ECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAIL 284 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh 284 (331)
+.+|..|+||||
T Consensus 244 --------------------------------------------------------------------~~~d~~g~TpL~ 255 (276)
T 4hbd_A 244 --------------------------------------------------------------------SLTDRDGSTALM 255 (276)
T ss_dssp --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred --------------------------------------------------------------------cCcCCCCCCHHH
Confidence 345678999999
Q ss_pred HHHhcChHHHHHHHHhhCC
Q 043901 285 IAAKMGVAEMVKKILDTFP 303 (331)
Q Consensus 285 ~A~~~g~~~~v~~Ll~~~~ 303 (331)
+|+..|+.+++++|+++.+
T Consensus 256 ~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 256 VALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHTCHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHhccC
Confidence 9999999999999999654
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=4.7e-30 Score=204.18 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=145.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.|+|+.|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---NAVDHAGMTPLRLA 87 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHH
Confidence 5678999999999999999999999988 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 88 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~-------------------- 139 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGH-------LEIVEVLLKNGADV-------------------- 139 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT--------------------
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC--------------------
Confidence 999999999999999998 99999999999999999998 79999998876542
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMV 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v 295 (331)
+.+|..|.||||+|+..|+.+++
T Consensus 140 ---------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 140 ---------------------------------------------------------NAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp ---------------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------------CCcCCCCCCHHHHHHHhCCHHHH
Confidence 23466899999999999999999
Q ss_pred HHHHh
Q 043901 296 KKILD 300 (331)
Q Consensus 296 ~~Ll~ 300 (331)
++|++
T Consensus 163 ~~L~~ 167 (169)
T 2y1l_E 163 EILQK 167 (169)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99998
No 63
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=4.6e-30 Score=206.20 Aligned_cols=168 Identities=14% Similarity=0.034 Sum_probs=153.0
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.+.++||.|+..|+.+++++|++.++.+++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAA 80 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHHH
Confidence 46799999999999999999999977679999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 81 ~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~--------------------- 131 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQ-------DQVAEDLVANGALV--------------------- 131 (179)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCS---------------------
T ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCc---------------------
Confidence 99999999999999998 99999999999999999998 79999998877553
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.+|..|.||||+|+..++.++++
T Consensus 132 --------------------------------------------------------~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 132 --------------------------------------------------------SICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp --------------------------------------------------------SBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred --------------------------------------------------------chhccCCCCcHHHHHHHHHHHHHH
Confidence 344668999999999999999999
Q ss_pred HHHhhCCccccccccCC
Q 043901 297 KILDTFPVAMQDMDSEK 313 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g 313 (331)
+|++ .|++++..+..+
T Consensus 156 ~L~~-~g~~~~~~~~~~ 171 (179)
T 3f6q_A 156 RAEK-MGQNLNRIPYKD 171 (179)
T ss_dssp HHHH-TTCCCSCBCCCC
T ss_pred HHHH-hhcCcccCCccc
Confidence 9999 799998876554
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=8.5e-30 Score=202.23 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=140.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
.|.||||.|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHH
Confidence 5889999999999999999999999988 99999999999999999999999999999988 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCc
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLK 250 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~ 250 (331)
..++ .++++.|+..+.+.
T Consensus 78 ~~~~-------~~~v~~Ll~~g~~~------------------------------------------------------- 95 (167)
T 3v31_A 78 SKGY-------TDIVKMLLDCGVDV------------------------------------------------------- 95 (167)
T ss_dssp HHTC-------HHHHHHHHHHTCCT-------------------------------------------------------
T ss_pred HcCC-------HHHHHHHHHCCCCC-------------------------------------------------------
Confidence 9998 79999998876542
Q ss_pred cchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 251 NFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+.+|+.++++
T Consensus 96 ----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 96 ----------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred ----------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 3346679999999999999999999999 79999999999999999999999999886
No 65
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.1e-29 Score=197.11 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=116.2
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
..||||.|+..|+.+++++|++.|++ ++ .+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHH
Confidence 46899999999999999999999986 65 5888999999999999999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
.|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+
T Consensus 77 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~ 125 (153)
T 1awc_B 77 EGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNH-------QEVVELLIKYGAD 125 (153)
T ss_dssp HTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 9999999999999998 99999999999999999998 7999999887654
No 66
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.3e-29 Score=197.41 Aligned_cols=154 Identities=13% Similarity=0.145 Sum_probs=140.9
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
|.||||+|+..|+.+++++|++..+..++..|..|.||||+ +..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHH
Confidence 56899999999999999999998444599999999999999 9999999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCC
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDD 217 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (331)
.|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+.. .+.
T Consensus 78 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~-~~~---------------------- 126 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGH-------TAVVSFLAAE-SDL---------------------- 126 (156)
T ss_dssp TTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTC-------HHHHHHHHTT-SCT----------------------
T ss_pred cCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhCh-------HHHHHHHHhc-cCC----------------------
Confidence 9999999999999988 99999999999999999998 7899888766 321
Q ss_pred ccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHH
Q 043901 218 KCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
+.+|..|.||||+|+..|+.+++++
T Consensus 127 -------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 127 -------------------------------------------------------HRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp -------------------------------------------------------TCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred -------------------------------------------------------CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 3456689999999999999999999
Q ss_pred HHhh
Q 043901 298 ILDT 301 (331)
Q Consensus 298 Ll~~ 301 (331)
|+++
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9973
No 67
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=4.5e-29 Score=199.01 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=148.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+..+|+.|+..|+.+.++.+++..+. .++.. ..|.||||+|+..|+.+++++|++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 58 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDN-----------------------LVNKPDERGFTPLIWASAFGEIETVRFLLEW 58 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSG-----------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcc-----------------------cccCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34689999999999999999988543 24455 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
|++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|.
T Consensus 59 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~ 133 (172)
T 3v30_A 59 GAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEAD 133 (172)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CCC-chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCC
Confidence 998 9999999999999999999999999999999998 99999999999999999999999999999998 999999
Q ss_pred CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
.|.||||+|+..++ .++++.|+..+.+...
T Consensus 134 ~g~t~l~~A~~~~~-------~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 134 SGYTPMDLAVALGY-------RKVQQVIENHILKLFQ 163 (172)
T ss_dssp TSCCHHHHHHHHTC-------HHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHhCc-------HHHHHHHHHHHHHHhc
Confidence 99999999999998 7999999998887653
No 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=7.9e-29 Score=195.50 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=143.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++.... ++.. ..|.||||+|+. |+.+++++|++.|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~------------------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g 60 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVN------------------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCC------------------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCC------------------------ccccCccCccHHHHHHc-CcHHHHHHHHHcC
Confidence 3689999999999999999976432 3445 789999999999 9999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|++.++.++..
T Consensus 61 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 136 (162)
T 1ihb_A 61 AN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136 (162)
T ss_dssp CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCC
Confidence 88 9999999999999999999999999999999998 9999999999999999999999999999999867999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
|.||||+|+..++ .++++.|+..++
T Consensus 137 g~t~l~~A~~~~~-------~~~~~~Ll~~GA 161 (162)
T 1ihb_A 137 GDTACDLARLYGR-------NEVVSLMQANGA 161 (162)
T ss_dssp SCCHHHHHHHTTC-------HHHHHHHHHTC-
T ss_pred CCcHHHHHHHcCC-------HHHHHHHHHhCC
Confidence 9999999999999 799999998875
No 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=2.4e-29 Score=199.22 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=144.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 82 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---HAKDKGGLVPLHNA 82 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC---CccCCCCCCHHHHH
Confidence 567899999999999999999999777668888999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~-------------------- 134 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGK-------YEICKLLLQHGADP-------------------- 134 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT--------------------
T ss_pred HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC--------------------
Confidence 999999999999999998 99999999999999999998 79999998876542
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMV 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v 295 (331)
+.+|..|.||||+|+. |+.+++
T Consensus 135 ---------------------------------------------------------~~~~~~g~t~l~~a~~-~~~~i~ 156 (165)
T 3twr_A 135 ---------------------------------------------------------TKKNRDGNTPLDLVKD-GDTDIQ 156 (165)
T ss_dssp ---------------------------------------------------------TCCCTTSCCTGGGSCT-TCHHHH
T ss_pred ---------------------------------------------------------cccCCCCCChhHhHhc-CChHHH
Confidence 3446689999999877 899999
Q ss_pred HHHHhhCCc
Q 043901 296 KKILDTFPV 304 (331)
Q Consensus 296 ~~Ll~~~~~ 304 (331)
++|++ .|+
T Consensus 157 ~~L~~-~gA 164 (165)
T 3twr_A 157 DLLRG-DAA 164 (165)
T ss_dssp HHHHT-C--
T ss_pred HHHhh-ccc
Confidence 99998 454
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3e-28 Score=193.77 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=142.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|++.|+.+.++.+++...+ ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 70 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGAD------------------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4689999999999999999987432 3445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 71 ~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 145 (169)
T 2y1l_E 71 AD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV---NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKF 145 (169)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 88 9999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
|.||+|+|+..++ .++++.|++.
T Consensus 146 g~t~l~~A~~~~~-------~~~~~~L~~~ 168 (169)
T 2y1l_E 146 GKTAFDISIDNGN-------EDLAEILQKL 168 (169)
T ss_dssp SCCHHHHHHHTTC-------HHHHHHHHTC
T ss_pred CCCHHHHHHHhCC-------HHHHHHHHHc
Confidence 9999999999998 7999888764
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=3.2e-28 Score=190.34 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=137.8
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
++|+.|++.|+.+.++.+++..+. .+....|.||||+|+..|+.+++++|++.|++
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 59 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAP------------------------FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCC------------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCC------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 679999999999999999987542 22236789999999999999999999999998
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCc
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 163 (331)
++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 60 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~ 134 (153)
T 1awc_B 60 -RDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCK 134 (153)
T ss_dssp -TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred -CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCC
Confidence 9999999999999999999999999999999998 99999999999999999999999999999998 999999999
Q ss_pred cHhHHHhcCCCcccccccchhHHHH
Q 043901 164 TRLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 164 t~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
||+|+|+..++ .++++.|
T Consensus 135 t~l~~A~~~~~-------~~i~~~L 152 (153)
T 1awc_B 135 TAFDISIDNGN-------EDLAEIL 152 (153)
T ss_dssp CHHHHHHHTTC-------HHHHHHH
T ss_pred CHHHHHHHcCC-------HHHHHHh
Confidence 99999999998 6777654
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=5.9e-30 Score=215.26 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=129.8
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||.|+..|+.++++.|+++|.+ ++.. ..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNA 77 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCC-cccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHH
Confidence 3589999999999999999999999987 7754 67899999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.|++ ++.+|..|+||||+|+..++ .++++.|+..+.+..
T Consensus 78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~~~------------------- 130 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNN-------VQVCKFLVESGAAVF------------------- 130 (239)
T ss_dssp HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTT-------------------
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCcc-------------------
Confidence 999999999999999998 99999999999999999999 799999998876543
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCC-chHHHHH--HhcChH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRN-ETAILIA--AKMGVA 292 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~tpLh~A--~~~g~~ 292 (331)
.++..| +||||+| +..|+.
T Consensus 131 ----------------------------------------------------------~~~~~~~~t~l~~a~~~~~g~~ 152 (239)
T 1ycs_B 131 ----------------------------------------------------------AMTYSDMQTAADKCEEMEEGYT 152 (239)
T ss_dssp ----------------------------------------------------------CCCSSSCCCHHHHCCSSSTTCC
T ss_pred ----------------------------------------------------------eecCCCCcchHHHHHHhhhccH
Confidence 223344 4999999 888999
Q ss_pred HHHHHHHhhCCcccccc---------ccCCCcHHHHHHHcCc
Q 043901 293 EMVKKILDTFPVAMQDM---------DSEKKNLVLLAVENRQ 325 (331)
Q Consensus 293 ~~v~~Ll~~~~~~~~~~---------d~~g~t~l~~A~~~~~ 325 (331)
+++++|++ .+++++.. +..+++|.++|.+.|.
T Consensus 153 ~~~~~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 153 QCSQFLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CHHHHHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999999 59988776 5568888888887775
No 73
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=4.2e-30 Score=228.95 Aligned_cols=226 Identities=10% Similarity=0.019 Sum_probs=148.1
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcc----cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc--ccCCCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRE----LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC--RKNNGE 129 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~--~~~~g~ 129 (331)
..|.||||+|+..|+.++|++|+++|++ .++..+ .||||+|+..|+.+++++|+++|+++ +. +|..|.
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~---~~~~~d~~g~ 199 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTE---ATAMIQAENY 199 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGG---HHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCcc---chhccCCCCC
Confidence 5678999999999999999999999963 244333 89999999999999999999999987 66 888899
Q ss_pred cHHHHHH-hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 130 TILHSAI-SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 130 t~Lh~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
||||+|+ ..|+.+++++|++.|+ .|.||||+|+..|+ .++++.|+..+.+..... .+.+
T Consensus 200 TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~-------~evv~lL~~~ga~~~~~~---~~l~-- 259 (376)
T 2aja_A 200 YAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGE-------KYVNPFIARHVNRLKEMH---DAFK-- 259 (376)
T ss_dssp HHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTT-------TTHHHHHHHHHHHHHHHH---TTTT--
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCC-------HHHHHHHHhcCccccccc---HHHH--
Confidence 9999999 9999999999998653 38999999999999 799999998887664311 1111
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhh---------hhccCCCC
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEK---------KDQQSGRN 279 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~g 279 (331)
.+...+...... ......+...+..++.. .+ ....+.+++|.+ .......+
T Consensus 260 -~A~~~g~~~vv~--~~~~~~~~~~~~~li~~----~~-------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~ 319 (376)
T 2aja_A 260 -LSNPDGVFDLVT--KSECLQGFYMLRNLIRR----ND-------------EVLLDDIRFLLSIPGIKALAPTATIPGDA 319 (376)
T ss_dssp -TTSSSSCCCCSS--HHHHHHHHHHHHHHHHH----CC-------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred -HHHHCCChhhhc--HHhhhhhHHHHHHHHHc----ch-------------hhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence 233333332221 01111222222222221 11 111222232222 12334468
Q ss_pred chHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 280 ETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 280 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.||||+|+..|+.++|++|++ .| ..++..|+|++++|...|+.+++++
T Consensus 320 ~~~L~~A~~~g~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 320 NELLRLALRLGNQGACALLLS-IP---SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp CHHHHHHHHHTCTTHHHHHTT-SH---HHHHSCC------------------
T ss_pred cHHHHHHHHcCcHHHHHHHHc-Ch---HHHHHHHHhccccccccccccHHHH
Confidence 899999999999999999998 45 5678889999999999999998864
No 74
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=4.6e-28 Score=194.49 Aligned_cols=160 Identities=18% Similarity=0.108 Sum_probs=147.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++..+. .++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 62 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTEN-----------------------DLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTS-----------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcc-----------------------cccccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 4689999999999999999987542 24455 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 63 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 137 (179)
T 3f6q_A 63 AR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKY 137 (179)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccC
Confidence 98 9999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
|.||+++|+..++ ..+++.++..+.+...
T Consensus 138 g~tpl~~A~~~~~-------~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 138 GEMPVDKAKAPLR-------ELLRERAEKMGQNLNR 166 (179)
T ss_dssp SCCGGGGSCHHHH-------HHHHHHHHHTTCCCSC
T ss_pred CCCcHHHHHHHHH-------HHHHHHHHHhhcCccc
Confidence 9999999999887 7999999999888764
No 75
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=2.2e-29 Score=221.57 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=151.1
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCccccccc-----------------CCCCCcHHHHHH
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVR-----------------NNDSETPLFLAA 100 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------d~~g~tpLh~A~ 100 (331)
+++ |++.| .+ ++.. ..|.|+++ |+.+++++|+++|.+ ++.. .....+.+|+|+
T Consensus 34 lv~~ll~~g-a~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 105 (327)
T 1sw6_A 34 LTSDFLSSP-LK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105 (327)
T ss_dssp CCCSTTTSS-CC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------CH
T ss_pred hHHHHhhCC-cc-cccCCCCCCcccC-----chhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccchhHHHH
Confidence 788 99998 44 5555 89999988 999999999999866 4431 111223357888
Q ss_pred hcCCHHHHHHHHhcCCCcccccc-ccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCccccc
Q 043901 101 LHGNMDAFLCLRSFNQAKDNRQC-RKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRG 179 (331)
Q Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 179 (331)
..+..+++++|++.|+++ +. +|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.
T Consensus 106 ~~~~~~~~~~l~~~g~dv---n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~---- 177 (327)
T 1sw6_A 106 DSLLQEVNDAFPNTQLNL---NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNN---- 177 (327)
T ss_dssp HHHHHHHHHHCTTSCCCS---CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHH----
T ss_pred HhhHHHHHHHHHhcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhccc----
Confidence 888889999999999999 99 899999999999999999999999999998 999999999999999998751
Q ss_pred ccchhHHHHHhhh-cccC-cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhh
Q 043901 180 SRLGLFDRIIHYY-KTKG-EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISII 257 (331)
Q Consensus 180 ~~~~~~~~li~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~ 257 (331)
...+.+..++..+ .++. .+..+.+|+|. ++.... ...+...+.++++..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~---A~~~~~----------~~g~~~~v~~Ll~~~---------------- 228 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHH---IIITSG----------MTGCSAAAKYYLDIL---------------- 228 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHH---HHHHHT----------STTCHHHHHHHHHHH----------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHH---HHHHcc----------ccccHHHHHHHHHHH----------------
Confidence 0025566666655 2222 24445555443 110000 000111112111100
Q ss_pred hhhchhhHHHHHh----------------hhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 258 PYIKKVQGLKFME----------------KKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 258 ~~~~~~~~~~~l~----------------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
..++. ..+.++..|.||||.|+. +++|++. +++.+|..|+||||+|+
T Consensus 229 --------~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~ 291 (327)
T 1sw6_A 229 --------MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAA 291 (327)
T ss_dssp --------HHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHH
T ss_pred --------HHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHH
Confidence 00000 004456677777777775 6777774 68899999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
++|+.++|++
T Consensus 292 ~~g~~~~v~~ 301 (327)
T 1sw6_A 292 RLGNISIVDA 301 (327)
T ss_dssp HHCCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 9999999873
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=5.9e-28 Score=191.17 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=139.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|++.|+.+.++.+++..+. ..... ..|.||||+|+..|+.+++++|++.|
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 65 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSV-----------------------NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTT-----------------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCC-----------------------CccccccCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 4689999999999999999876432 13334 67899999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 66 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 140 (165)
T 3twr_A 66 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV---NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRD 140 (165)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCC
Confidence 98 9999999999999999999999999999999999 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
|.||+|+|.. ++ .++++.|+..+
T Consensus 141 g~t~l~~a~~-~~-------~~i~~~L~~~g 163 (165)
T 3twr_A 141 GNTPLDLVKD-GD-------TDIQDLLRGDA 163 (165)
T ss_dssp SCCTGGGSCT-TC-------HHHHHHHHTC-
T ss_pred CCChhHhHhc-CC-------hHHHHHHhhcc
Confidence 9999999877 65 68888887654
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.5e-27 Score=186.98 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=139.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++. .. ...+.. ..|.||||+ +..|+.+++++|++.|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~----------------------~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g 58 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-EL----------------------VHPDALNRFGKTALQV-MMFGSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TC----------------------CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hC----------------------cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC
Confidence 4789999999999999999987 21 123445 789999999 9999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++. ++ ++.+|..
T Consensus 59 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~ 132 (156)
T 1bd8_A 59 AS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDAR 132 (156)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCC
Confidence 98 9999999999999999999999999999999998 99999999999999999999999999999 65 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
|.||||+|+..++ .++++.|+++
T Consensus 133 g~t~l~~A~~~~~-------~~~v~~Ll~~ 155 (156)
T 1bd8_A 133 GLTPLELALQRGA-------QDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHSCC-------HHHHHHHHTT
T ss_pred CCCHHHHHHHcCc-------HHHHHHHHhh
Confidence 9999999999999 7999888753
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-30 Score=216.49 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=128.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|+..|+.+.++.+++.+.+ ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEMND------------------------PSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSSC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4578999999999999988876432 4455 88999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHHH--HhcCCHHHHHHHHHhCCcccccc
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHSA--ISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|.||||+| +..|+.+++++|++.|++ ++.+
T Consensus 78 a~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~ 152 (229)
T 2vge_A 78 AN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI---FATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLM 152 (229)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTS
T ss_pred CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccc
Confidence 98 9999999999999999999999999999999998 8876 6999999999 999999999999999998 9999
Q ss_pred cCCCccHhHHHhcCC
Q 043901 159 NENGLTRLHILASKP 173 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~ 173 (331)
|..|.||++.++...
T Consensus 153 ~~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 153 NSGAVYALWDYSAEF 167 (229)
T ss_dssp GGGEEEESSCBCCSS
T ss_pred cCCchHHHHHHhhcc
Confidence 999999999665543
No 79
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=1.3e-27 Score=192.80 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=137.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCH----HHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNE----AMCHCT 77 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~----~~v~~L 77 (331)
.+.||.|++.|+.+.++.++.... .... ..|+||||+|+..|+. +++++|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~-------------------------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~L 61 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY-------------------------EDKESVLKSNILYDVLRNNNDEARYKISMFL 61 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS-------------------------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc-------------------------ccccccCCCCHHHHHHHcCCcchHHHHHHHH
Confidence 367999999999999999988642 2233 6799999999999985 599999
Q ss_pred HhcCcccccccCCCCCcHHHHHHhcCC------HHHHHHHHhcCCCccccccccCCCC-cHHHHHHhcC-----CHHHHH
Q 043901 78 ASKDRELISVRNNDSETPLFLAALHGN------MDAFLCLRSFNQAKDNRQCRKNNGE-TILHSAISGE-----YFSIAF 145 (331)
Q Consensus 78 l~~~~~~~~~~d~~g~tpLh~A~~~~~------~~~~~~Ll~~g~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~~~ 145 (331)
++.|++ +|.+|..|.||||+|+..++ .+++++|+++|+++ +.+|..|. ||||+|+..+ ..++++
T Consensus 62 l~~Gad-vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi---n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 62 INKGAD-IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI---TALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp HHTTCC-SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS---SSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred HHCCCC-CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC---CccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 999998 99999999999999999987 57899999999999 99999999 9999999944 467999
Q ss_pred HHHH-hCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 146 QIMR-AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 146 ~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
+|++ .|++ ++.+|..|.||||+|+..++ .++++.|..+...
T Consensus 138 ~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~-------~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 138 LIFSQSGLQ-LLIKDKWGLTALEFVKRCQK-------PIALKMMEDYIKK 179 (186)
T ss_dssp HHHTSTTCC-TTCCCTTSCCHHHHHHTTTC-------HHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcccCCCCCCHHHHHHHcCC-------HHHHHHHHHHHHH
Confidence 9999 8988 99999999999999999998 6888888776544
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=8.3e-29 Score=208.24 Aligned_cols=159 Identities=13% Similarity=-0.012 Sum_probs=120.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
+..+|+.|++.|+.+.++.+++.+.+ ++....|.||||+|+..|+.+++++|++.|
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~------------------------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 60 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMR------------------------VKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60 (239)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT
T ss_pred ccccCchhhhhhhHHHHHHHhccCCC------------------------cccCchhhHHHHHHHHcCCHHHHHHHHHcC
Confidence 34678888888888888887776432 344467899999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus 61 ~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 135 (239)
T 1ycs_B 61 DD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV---NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYS 135 (239)
T ss_dssp SS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCC
Confidence 97 9999999999999999999999999999999998 99999999999999999999999999999998 9999887
Q ss_pred Cc-cHhHHH--hcCCCcccccccchhHHHHHhhhcccC
Q 043901 162 GL-TRLHIL--ASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 162 g~-t~l~~A--~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
|. ||+|+| +..++ .++++.|+..+.+..
T Consensus 136 ~~~t~l~~a~~~~~g~-------~~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 136 DMQTAADKCEEMEEGY-------TQCSQFLYGVQEKMG 166 (239)
T ss_dssp SCCCHHHHCCSSSTTC-------CCHHHHHHHHHHHTT
T ss_pred CCcchHHHHHHhhhcc-------HHHHHHHHHhhhccc
Confidence 77 999999 77777 799999998887755
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=4.4e-27 Score=180.07 Aligned_cols=130 Identities=9% Similarity=0.072 Sum_probs=123.2
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC-CC
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN-GE 129 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~-g~ 129 (331)
++.. ..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+. |+.+++++|++.|+++ +.++.. |.
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~~g~ 79 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP---NCADPATLT 79 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS---SCCBTTTTB
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC---CCcCCCCCC
Confidence 4556 8899999999999999999999999988 99999999999999999 9999999999999998 999999 99
Q ss_pred cHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 130 TILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 130 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~-------~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGH-------RDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTC-------HHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 999999999999999999999998 99999999999999999998 7999999987753
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=3.7e-27 Score=190.07 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=135.4
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccC-CCCCcHHHHHHhcCCH----HHHHHHHhcCCCccccccccCCCCcHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRN-NDSETPLFLAALHGNM----DAFLCLRSFNQAKDNRQCRKNNGETIL 132 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~g~t~L 132 (331)
+.++||.|+..|+.+.++.++..+. +..+ ..|.||||+|+.+|+. +++++|++.|+++ +.+|..|+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpL 79 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI---KSRTKEGTTLF 79 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHH
Confidence 4689999999999999999998664 3444 6799999999999975 5999999999999 99999999999
Q ss_pred HHHHhcCC------HHHHHHHHHhCCcccccccCCCc-cHhHHHhcCCCcccccccchhHHHHHh-hhcccCcCCCCCCC
Q 043901 133 HSAISGEY------FSIAFQIMRAYPDLVNSVNENGL-TRLHILASKPTAFKRGSRLGLFDRIIH-YYKTKGEANDEESP 204 (331)
Q Consensus 133 h~A~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~~~ 204 (331)
|+|+..++ .+++++|+++|++ ++.+|..|. ||||+|+..+.. .....++++.|+. .+.++
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~--~~~~~~iv~~Ll~~~gad~--------- 147 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVD--ENEMIPLYKLIFSQSGLQL--------- 147 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSC--HHHHHHHHHHHHTSTTCCT---------
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCC--hhhHHHHHHHHHHhcCCCC---------
Confidence 99999987 6899999999998 999999999 999999996541 0111345555555 44332
Q ss_pred cccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHH
Q 043901 205 ECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAIL 284 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh 284 (331)
+.+|..|.||||
T Consensus 148 --------------------------------------------------------------------~~~d~~G~TpL~ 159 (186)
T 3t8k_A 148 --------------------------------------------------------------------LIKDKWGLTALE 159 (186)
T ss_dssp --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred --------------------------------------------------------------------cccCCCCCCHHH
Confidence 456778999999
Q ss_pred HHHhcChHHHHHHHHhhCCccccccc
Q 043901 285 IAAKMGVAEMVKKILDTFPVAMQDMD 310 (331)
Q Consensus 285 ~A~~~g~~~~v~~Ll~~~~~~~~~~d 310 (331)
+|++.|+.++|++|.+ +....+.++
T Consensus 160 ~A~~~~~~~~v~~L~~-~~~~~~~~~ 184 (186)
T 3t8k_A 160 FVKRCQKPIALKMMED-YIKKYNLKE 184 (186)
T ss_dssp HHHTTTCHHHHHHHHH-HHHHHTCCC
T ss_pred HHHHcCCHHHHHHHHH-HHHHHhccc
Confidence 9999999999999987 455555444
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=9.4e-27 Score=182.56 Aligned_cols=141 Identities=9% Similarity=0.072 Sum_probs=81.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc-HHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET-ILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t-~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+ .|+.+++++|++.|+++ +.++..|.| |||+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~---~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP---NCADPATLTRPVHD 84 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC---CCCCTTTCCCHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHH
Confidence 4556666666666666666666666555 6666666666666653 56666666666666655 566666665 6666
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
|+..|+.+++++|+++|++ ++.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~-~~~--------------------------------------------------------- 106 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGAR-LDV--------------------------------------------------------- 106 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCC-SSC---------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHcCCC-Ccc---------------------------------------------------------
Confidence 6666666666666665544 222
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEM 294 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~ 294 (331)
+|..|+||||+|+..|+.++
T Consensus 107 ------------------------------------------------------------~d~~g~tpl~~A~~~~~~~~ 126 (156)
T 1bi7_B 107 ------------------------------------------------------------RDAWGRLPVDLAEELGHRDV 126 (156)
T ss_dssp ------------------------------------------------------------CCTTCCCHHHHHHHHTCHHH
T ss_pred ------------------------------------------------------------cCCCCCCHHHHHHHhCHHHH
Confidence 24468889999999999999
Q ss_pred HHHHHhhCCccccccccCCCcHHHHH
Q 043901 295 VKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 295 v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
+++|++ .|++++.+|..|.||.+-+
T Consensus 127 v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 127 ARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHSS-CC-----------------
T ss_pred HHHHHH-cCCCCCccCcCcCcccccC
Confidence 999998 6999999999999988744
No 84
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.1e-28 Score=219.89 Aligned_cols=176 Identities=9% Similarity=0.013 Sum_probs=144.7
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCccc--ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDREL--ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHS 134 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~ 134 (331)
+++||||+|+..|+.+++++|++.|+.. .+..+..|.||||+|+.+|+.+++++|+++|+++...+..+.+ .||||+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 3569999999999999999999998731 2234556889999999999999999999999863101222233 899999
Q ss_pred HHhcCCHHHHHHHHHhCCccccc--ccCCCccHhHHHh-cCCCcccccccchhHHHHHhhhcccCcCCCCCCCccccccc
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNS--VNENGLTRLHILA-SKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSIS 211 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~A~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 211 (331)
|+..|+.+++++|+++|++ ++. .|..|.||||+|+ ..|+ .++++.|+..+.
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~-------~eiv~~Ll~~ga------------------ 223 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGH-------HNVINFLLDCPV------------------ 223 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHTTSHH------------------
T ss_pred HHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCC-------HHHHHHHHhCCC------------------
Confidence 9999999999999999988 777 8889999999999 9999 799988866431
Q ss_pred ccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh
Q 043901 212 FSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV 291 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~ 291 (331)
.|.||||+|+.+|+
T Consensus 224 ------------------------------------------------------------------~~~taL~~Aa~~g~ 237 (376)
T 2aja_A 224 ------------------------------------------------------------------MLAYAEIHEFEYGE 237 (376)
T ss_dssp ------------------------------------------------------------------HHHHHHHCTTTTTT
T ss_pred ------------------------------------------------------------------ccchHHHHHHHCCC
Confidence 27999999999999
Q ss_pred HHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 292 AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 292 ~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
.+++++|++ .|++++..| ++++.|+.+|+.++++
T Consensus 238 ~evv~lL~~-~ga~~~~~~----~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 238 KYVNPFIAR-HVNRLKEMH----DAFKLSNPDGVFDLVT 271 (376)
T ss_dssp TTHHHHHHH-HHHHHHHHH----TTTTTTSSSSCCCCSS
T ss_pred HHHHHHHHh-cCccccccc----HHHHHHHHCCChhhhc
Confidence 999999999 588887654 4788999999998763
No 85
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=3.5e-26 Score=192.75 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=106.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++ +.+ +|.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---DHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT---TCCCSSSCCCHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CcCCCCCCCCHHHH
Confidence 578999999999999999999999 776 9999999999999999999999999999999999 8888 789999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKP 173 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 173 (331)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+
T Consensus 118 A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL 155 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999998 9999999999999998754
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=3.6e-26 Score=174.95 Aligned_cols=132 Identities=12% Similarity=0.046 Sum_probs=121.3
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC-C
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN-G 162 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-g 162 (331)
+++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+. ++.+++++|++.|++ ++.+|.. |
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g 78 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATL 78 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTT
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCC
Confidence 38999999999999999999999999999999998 9999999999999999 999999999999998 9999999 9
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhch
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALP 242 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 242 (331)
.||||+|+..++ .++++.|+..+.+.
T Consensus 79 ~t~L~~A~~~~~-------~~~v~~Ll~~ga~~----------------------------------------------- 104 (136)
T 1d9s_A 79 TRPVHDAAREGF-------LDTLVVLHRAGARL----------------------------------------------- 104 (136)
T ss_dssp BCHHHHHHHHTC-------HHHHHHHHHTCCCC-----------------------------------------------
T ss_pred CCHHHHHHHcCC-------HHHHHHHHHcCCCC-----------------------------------------------
Confidence 999999999998 79999998876543
Q ss_pred hhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 243 IVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 243 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
+.+|..|.||||+|+..|+.+++++|++ .|+|
T Consensus 105 ------------------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad 136 (136)
T 1d9s_A 105 ------------------------------DVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD 136 (136)
T ss_dssp ------------------------------CCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred ------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence 2346689999999999999999999999 4764
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=3.7e-26 Score=184.06 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=107.4
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|.||||+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---DHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCSSSSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCCHHHH
Confidence 578999999999999999999999 776 9999999999999999999999999999999998 8888 889999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK 155 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhcc
Confidence 9999999999999999998 99999999999999988654
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=5.6e-26 Score=173.91 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=118.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A 87 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV---NAVDAIGFTPLHLA 87 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHH
Confidence 6788999999999999999999999988 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|++.+
T Consensus 88 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~-------~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGN-------EDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCC-------HHHHHHHHHcC
Confidence 999999999999999998 99999999999999999998 79999887653
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=1.3e-25 Score=169.14 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=120.2
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|++.|+++ +.++..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC---cccCCCCCcHHHHHH
Confidence 589999999999999999999999988 9999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
..++.+++++|++.|++ ++.+|..|.|||++|+..++ .++++.|+..+.
T Consensus 77 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGH-------LEVVKLLLEAGA 125 (126)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHTC
T ss_pred HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCc-------HHHHHHHHHcCC
Confidence 99999999999999998 99999999999999999998 799999998775
No 90
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=4e-25 Score=173.21 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=111.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.|+..|+.+.++.+++.... ++.. ..|.||||+|+ .|+.+++++|++.|
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g 67 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALLEAGAN------------------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCC------------------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC
Confidence 5789999999999999999986422 4445 78999999986 99999999999999
Q ss_pred cccccccCCCCCc-HHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 82 RELISVRNNDSET-PLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 82 ~~~~~~~d~~g~t-pLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
++ ++.+|..|.| |||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.++.
T Consensus 68 ~~-~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~ 142 (156)
T 1bi7_B 68 AE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNH 142 (156)
T ss_dssp CC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred CC-CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCc
Confidence 88 9999999999 999999999999999999999999 99999999999999999999999999999998 999999
Q ss_pred CCccHhHHHh
Q 043901 161 NGLTRLHILA 170 (331)
Q Consensus 161 ~g~t~l~~A~ 170 (331)
.|.||.+.+.
T Consensus 143 ~g~t~~~~~~ 152 (156)
T 1bi7_B 143 ARIDAAEGPS 152 (156)
T ss_dssp ----------
T ss_pred CcCcccccCC
Confidence 9999988543
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=1.9e-25 Score=171.15 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=110.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV---NTTGYQNDSPLHDA 83 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCGGGCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc---cCcCCCCCCHHHHH
Confidence 7899999999999999999999999988 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
+..|+.+++++|++.|++ ++.+|..|.||+|+|+..+.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~ 121 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESM 121 (137)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccH
Confidence 999999999999999998 99999999999999987665
No 92
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=5e-25 Score=165.56 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=105.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---NAPDKHHITPLLSA 80 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCTTSCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHH
Confidence 4678999999999999999999999987 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 172 (331)
+..|+.+++++|++.|++ ++.+|..|.||+|+|...
T Consensus 81 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCH
Confidence 999999999999999998 999999999999999543
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1.3e-24 Score=166.37 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=65.1
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 87 VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 87 ~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHH
Confidence 56788889999999999999999999888888 88888888999999988999999988888776 555554444444
Q ss_pred HHHhcCCC
Q 043901 167 HILASKPT 174 (331)
Q Consensus 167 ~~A~~~~~ 174 (331)
|+|+..++
T Consensus 81 ~~A~~~~~ 88 (137)
T 3c5r_A 81 HDAAKNGH 88 (137)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 44444444
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=5.4e-24 Score=184.66 Aligned_cols=126 Identities=14% Similarity=0.007 Sum_probs=115.8
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccc------cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISV------RNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQCRKN 126 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~ 126 (331)
..+.++|+.|+..|+.+.++.|++.+++ ++. .+..|.||||+|+.. |+.+++++|++.|+++ +.+|.
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv---n~~d~ 224 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL---DAKAA 224 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT---TCCCT
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC---CCCCC
Confidence 3455789999999999999999999988 887 688999999999997 8999999999999998 99999
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 127 NGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 127 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+..+.
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~-------~~iv~~Ll~~ga 283 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHH-------KECEELLEQAQA 283 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHhcC
Confidence 999999999999999999999999998 99999999999999999998 688888776654
No 95
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=8.9e-24 Score=158.93 Aligned_cols=126 Identities=26% Similarity=0.348 Sum_probs=115.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
+|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.|.+ ++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHH
Confidence 4899999999999999999999999998 89999999999999999999999999999998 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCc
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLK 250 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~ 250 (331)
..++ .++++.|+..+.+.
T Consensus 77 ~~~~-------~~~~~~Ll~~g~~~------------------------------------------------------- 94 (126)
T 1n0r_A 77 RNGH-------LEVVKLLLEAGADV------------------------------------------------------- 94 (126)
T ss_dssp HTTC-------HHHHHHHHHTTCCT-------------------------------------------------------
T ss_pred HcCh-------HHHHHHHHHcCCCC-------------------------------------------------------
Confidence 9998 79999988776442
Q ss_pred cchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 251 NFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
+.+|..|.||||+|+..|+.+++++|++ .|+|
T Consensus 95 ----------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad 126 (126)
T 1n0r_A 95 ----------------------NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAY 126 (126)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred ----------------------cccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence 2346679999999999999999999999 5764
No 96
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=1.4e-23 Score=160.49 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=111.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+||.|+..|+.+.++.+++...+ ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 70 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGAD------------------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4689999999999999999987432 3445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAY 151 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 151 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|
T Consensus 71 ~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 71 AD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV---NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 98 9999999999999999999999999999999998 999999999999999999999999999865
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=2.1e-25 Score=179.66 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=100.0
Q ss_pred hhhccCCHHHHHHHHhcCccc----------ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 64 YIKPLGNEAMCHCTASKDREL----------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 64 ~A~~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
.|++.|..+++++|++.+... ....+..|.||||+|+..|+.+++++|++ |+++ +.+|..|.||||
T Consensus 6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~ 81 (183)
T 3deo_A 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALL 81 (183)
T ss_dssp EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHH
T ss_pred HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHH
Confidence 455566666666666543221 11135578999999999999999999999 8888 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCccccccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 134 SAISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
+|+..|+.+++++|++.|++ ++.++ ..|+||||+|+..++ .++++.|+..+.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~~ 136 (183)
T 3deo_A 82 FVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVR-------PEVVEALVELGADI 136 (183)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHTTC-------HHHHHHHHHHTCCT
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhcCc-------HHHHHHHHHcCCCC
Confidence 99999999999999999998 88888 899999999999998 79999998887553
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=184.87 Aligned_cols=142 Identities=15% Similarity=0.037 Sum_probs=119.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCccee-c-cCCCchhhhhhcc---CCHHHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYI-R-LGGNHGRKYIKPL---GNEAMCHCT 77 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~-~-~~g~t~Lh~A~~~---g~~~~v~~L 77 (331)
.++|+.|+..|+.+.++.++....+... ..... . ..|.||||+|+.. |+.+++++|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~-------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~L 212 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQ-------------------PLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTS-------------------CEECSSSCSCEECHHHHHHHTCCTTTHHHHHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccc-------------------cCCCcccCCCCccHHHHHHHhcccCcHHHHHHH
Confidence 3569999999999999999877654220 00111 3 7899999999987 899999999
Q ss_pred HhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccc
Q 043901 78 ASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNS 157 (331)
Q Consensus 78 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~ 157 (331)
+++|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 213 l~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---- 284 (301)
T 2b0o_E 213 IQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV---GTVNEAGETALDIARKKHHKECEELLEQAQAG---- 284 (301)
T ss_dssp HHHSSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC---SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred HhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----
Confidence 999998 9999999999999999999999999999999999 99999999999999999999999999998875
Q ss_pred ccCCCccHhHHHhcCCC
Q 043901 158 VNENGLTRLHILASKPT 174 (331)
Q Consensus 158 ~~~~g~t~l~~A~~~~~ 174 (331)
.|.||||+|+..|+
T Consensus 285 ---~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 ---TFAFPLHVDYSWVI 298 (301)
T ss_dssp ---TTSSCCC-------
T ss_pred ---CCCChhHHHHhcCC
Confidence 68999999999886
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=2.5e-25 Score=187.55 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=116.4
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.+++..++..|+.+.+..+...+.+ + +..|.||||+|+..|+.+++++|++ |+++ +.+|..|.||||+|
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~-~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A 84 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD-V---VSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFV 84 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHH-H---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHH
T ss_pred CCCccHHHHHHHcCCCcccccccccccc-c---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHH
Confidence 5677889999999998887776665544 3 3569999999999999999999999 9988 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCccccccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcc
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPEC 206 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~ 206 (331)
+..|+.+++++|+++|++ ++.++ ..|.||||+|+..++ .++++.|+..+.+... +..+.+|+|
T Consensus 85 ~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~ga~~~~~d~~g~t~l~ 149 (244)
T 3ui2_A 85 AGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVR-------PEVVEALVELGADIEVEDERGLTALE 149 (244)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 999999999999999998 88888 889999999999999 7999999999877653 344445544
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=6.8e-24 Score=176.06 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=114.1
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g~t~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~---~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL---NQQNKLGDTALHA 146 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC---CCCCTTSCCHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc---cccCCCCCCHHHH
Confidence 4678999999999999999999999988 999999999999999999999999999999 9988 9999999999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.++..+....
T Consensus 147 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~-------~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAAC-------ASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHH-------HHHHC----------
T ss_pred HHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhH-------HHHHHHHhccchhhh
Confidence 9999999999999999998 99999999999999999887 688888877665543
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.8e-23 Score=157.02 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHH
Q 043901 89 NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHI 168 (331)
Q Consensus 89 d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 168 (331)
+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~---------- 69 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAP---------- 69 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCC----------
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcC----------
Confidence 345677888888888888888888888777 77777888888888888888888888776654 3322
Q ss_pred HhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccC
Q 043901 169 LASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLG 248 (331)
Q Consensus 169 A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~ 248 (331)
T Consensus 70 -------------------------------------------------------------------------------- 69 (123)
T 3aaa_C 70 -------------------------------------------------------------------------------- 69 (123)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccc
Q 043901 249 LKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSI 328 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~i 328 (331)
|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|...+..++
T Consensus 70 ---------------------------d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 70 ---------------------------DKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp ---------------------------CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred ---------------------------CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 3358888888888888999999998 589999999999999999877766665
Q ss_pred cc
Q 043901 329 YK 330 (331)
Q Consensus 329 v~ 330 (331)
+|
T Consensus 122 l~ 123 (123)
T 3aaa_C 122 LQ 123 (123)
T ss_dssp HC
T ss_pred hC
Confidence 53
No 102
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=4.8e-23 Score=146.67 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=88.4
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
+|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHH
Confidence 589999999999999999999999998 9999999999999999999999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCc
Q 043901 137 SGEYFSIAFQIMRAYPD 153 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~ 153 (331)
..|+.+++++|++.|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999998863
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=2.3e-22 Score=172.48 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=121.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhcc---CCHHHHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPL---GNEAMCHCTA 78 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~---g~~~~v~~Ll 78 (331)
..+|+.|+..|+.+.++.++..+.+... ...++.. ..|.||||+|+.. |+.+++++|+
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~------------------~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll 192 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTE------------------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 192 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTS------------------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhh------------------hccccccccCCCCcchHHHHhcccchHHHHHHHH
Confidence 4679999999999999999988665321 1113444 7899999999998 8999999999
Q ss_pred hcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 79 SKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 79 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 193 ~~ga~-in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----- 263 (278)
T 1dcq_A 193 QNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI---EIANESGETPLDIAKRLKHEHCEELLTQALSG----- 263 (278)
T ss_dssp HHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred HCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence 99998 9999999999999999999999999999999999 99999999999999999999999999999875
Q ss_pred cCCCccHhHHHhcCC
Q 043901 159 NENGLTRLHILASKP 173 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~ 173 (331)
.+++|.++...
T Consensus 264 ----~~~~~~~v~~~ 274 (278)
T 1dcq_A 264 ----RFNSHVHVEYE 274 (278)
T ss_dssp ----CCCSSCCCCCC
T ss_pred ----CCCcceeeecc
Confidence 45666555543
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=3.3e-23 Score=171.92 Aligned_cols=139 Identities=19% Similarity=0.119 Sum_probs=111.9
Q ss_pred cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHh-CCcccccccCCCcc
Q 043901 86 SVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRA-YPDLVNSVNENGLT 164 (331)
Q Consensus 86 ~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t 164 (331)
+..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++. |++ ++.+|..|.|
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~t 142 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDT 142 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCC
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCC
Confidence 345667899999999999999999999999998 99999999999999999999999999999 666 9999999999
Q ss_pred HhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhh
Q 043901 165 RLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIV 244 (331)
Q Consensus 165 ~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 244 (331)
|||+|+..++ .++++.|+..+.+..
T Consensus 143 pL~~A~~~~~-------~~~v~~Ll~~ga~~~------------------------------------------------ 167 (222)
T 3ehr_A 143 ALHAAAWKGY-------ADIVQLLLAKGARTD------------------------------------------------ 167 (222)
T ss_dssp HHHHHHHHTC-------HHHHHHHHHHTCCSC------------------------------------------------
T ss_pred HHHHHHHcCC-------HHHHHHHHHcCCCCc------------------------------------------------
Confidence 9999999998 799999988876533
Q ss_pred hccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCC
Q 043901 245 LGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEK 313 (331)
Q Consensus 245 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 313 (331)
.+|..|.||||+|+..|+.++++.|++ .+++.+..+.+|
T Consensus 168 -----------------------------~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~ 206 (222)
T 3ehr_A 168 -----------------------------LRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED 206 (222)
T ss_dssp -----------------------------CCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred -----------------------------cccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence 346689999999999999999999999 688887777654
No 105
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=1.9e-22 Score=149.41 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=100.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV---NARSKDGNTPEHLA 82 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT---TCCCTTCCCTTHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---cccCCCCCCHHHHH
Confidence 7899999999999999999999999998 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
+..++.+++++|+++|++ ++.++..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGAD-VNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSS-HHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCC-CCcCCccccccc
Confidence 999999999999999998 999999998874
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=3.6e-21 Score=178.51 Aligned_cols=139 Identities=14% Similarity=0.013 Sum_probs=113.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhh---ccCCHHHHHHHHh
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIK---PLGNEAMCHCTAS 79 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~---~~g~~~~v~~Ll~ 79 (331)
++||.|+..|+.+.++.+++.+.+... ....... ..|.||||+|+ ..|+.+++++|++
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~------------------~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~ 195 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQ------------------PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSS------------------CBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccC------------------CCCCcccccccchHHHHHHHhcccccHHHHHHHHH
Confidence 579999999999999999998755321 0011122 68999999995 4999999999999
Q ss_pred cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 80 KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 80 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
+|++ +|.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 196 ~ga~-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~~~-- 268 (497)
T 3lvq_E 196 NGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV---GTVNEAGETALDIARKKHHKECEELLEQAQAG-TFA-- 268 (497)
T ss_dssp HSCC-TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCC---SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------
T ss_pred cCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC-CCC--
Confidence 9998 9999999999999999999999999999999999 99999999999999999999999999999998 554
Q ss_pred CCCccHhHHHhc
Q 043901 160 ENGLTRLHILAS 171 (331)
Q Consensus 160 ~~g~t~l~~A~~ 171 (331)
+|+|.+..
T Consensus 269 ----~~~h~~~~ 276 (497)
T 3lvq_E 269 ----FPLHVDYS 276 (497)
T ss_dssp ------------
T ss_pred ----Ccceeecc
Confidence 46665543
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=2.9e-21 Score=171.39 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=118.4
Q ss_pred CCCchhhhhhcc-CCHHHHHHHHhcCcccccccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 57 GGNHGRKYIKPL-GNEAMCHCTASKDRELISVRN--NDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 57 ~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
.+.|+||.|+.. |+.+++++|++.|++ ++..+ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv---n~~d~~G~TpLh 273 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---NQADSAGRGPLH 273 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHH
Confidence 456899999999 999999999999998 99988 88999999999999999999999999999 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 134 SAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~-------~~iv~lLl~~~~ 325 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETAN-------ADIVTLLRLAKM 325 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCC-------HHHHHHHHHcCC
Confidence 99999999999999999998 99999999999999999999 799999887664
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=8.9e-21 Score=162.54 Aligned_cols=127 Identities=15% Similarity=0.053 Sum_probs=117.3
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCccc-----ccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccCCC
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDREL-----ISVRNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~g 128 (331)
...++|+.|+..|+.+.++.+++.|.+. ++..|..|.||||+|+.. |+.+++++|+++|+++ +.+|..|
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i---n~~d~~g 205 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL---DKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT---TCCCTTC
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc---cccCCCC
Confidence 3457899999999999999999999873 334488899999999999 8999999999999999 9999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+..+..
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKH-------EHCEELLTQALSG 263 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 9999999999999999999999998 99999999999999999999 7999999998865
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=7.5e-21 Score=176.33 Aligned_cols=130 Identities=14% Similarity=-0.002 Sum_probs=118.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCccccccc------CCCCCcHHHHHHh---cCCHHHHHHHHhcCCCccccccccC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVR------NNDSETPLFLAAL---HGNMDAFLCLRSFNQAKDNRQCRKN 126 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~~~~~~~~~Ll~~g~~~~~~~~~~~ 126 (331)
....+.||.|+..|+.++++.|++.|++ +|.. |..|.||||+|+. .|+.+++++|++.|+++ +.+|.
T Consensus 130 ~~~~~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v---n~~d~ 205 (497)
T 3lvq_E 130 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL---DAKAA 205 (497)
T ss_dssp C-CHHHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT---TCCCS
T ss_pred cccHHHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC---CccCC
Confidence 3345789999999999999999999988 8877 8899999999976 89999999999999999 99999
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 127 NGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 127 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+..+.+...
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~-------~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHH-------KECEELLEQAQAGTFA 268 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTCC----
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHhCCCCCC
Confidence 999999999999999999999999998 99999999999999999999 7999999998887663
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.2e-20 Score=134.07 Aligned_cols=92 Identities=27% Similarity=0.365 Sum_probs=86.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHH
Confidence 4899999999999999999999999998 99999999999999999999999999999998 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhc
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
..++ .++++.|+..+.
T Consensus 77 ~~~~-------~~~~~~Ll~~ga 92 (93)
T 1n0q_A 77 RNGH-------LEVVKLLLEAGA 92 (93)
T ss_dssp HTTC-------HHHHHHHHHTTC
T ss_pred HcCC-------HHHHHHHHHcCC
Confidence 9998 799999988764
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.7e-20 Score=165.09 Aligned_cols=143 Identities=11% Similarity=0.057 Sum_probs=109.9
Q ss_pred hHHHHHHhc-CCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec--cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 4 NSLSKFAVR-GQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR--LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 4 ~~L~~a~~~-g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
.+||.|+.. |+.+.++.+++.+.+. .... ..|.||||+|+..|+.+++++|+++
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadv-----------------------n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~ 257 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADV-----------------------NWVNGGQDNATPLIQATAANSLLACEFLLQN 257 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCT-----------------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCC-----------------------CccccccCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 378888888 8888888888765431 2222 6799999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcc--cccc
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDL--VNSV 158 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~--~~~~ 158 (331)
|++ +|..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.+++++|+..+... ....
T Consensus 258 Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~---~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~ 333 (368)
T 3jue_A 258 GAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADL---GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333 (368)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence 998 9999999999999999999999999999999999 999999999999999999999999999887541 2344
Q ss_pred cCCCccHhHHHhcCC
Q 043901 159 NENGLTRLHILASKP 173 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~ 173 (331)
+..+.|+++.+....
T Consensus 334 ~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 334 QAGDETYLDIFRDFS 348 (368)
T ss_dssp ---------------
T ss_pred CCCCCCHHHHHHHHH
Confidence 566788888766554
No 112
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=2.5e-19 Score=131.52 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=85.2
Q ss_pred ccCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 043901 55 RLGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHS 134 (331)
Q Consensus 55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~ 134 (331)
..+|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV---XAQDKFGKTAFDI 96 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccccCCCcHHHH
Confidence 37899999999999999999999999987 9999999999999999999999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHH
Q 043901 135 AISGEYFSIAFQI 147 (331)
Q Consensus 135 A~~~~~~~~~~~L 147 (331)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999987
No 113
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=5.9e-19 Score=130.48 Aligned_cols=100 Identities=22% Similarity=0.192 Sum_probs=94.9
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 87 VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 87 ~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|++.|++ ++.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHH
Confidence 46889999999999999999999999999998 99999999999999999999999999999998 999999999999
Q ss_pred HHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 167 HILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
|+|+..++ .++++.|+..+.++..
T Consensus 80 ~~A~~~~~-------~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 80 HLAKKNGH-------HEIVKLLDAKGADVNA 103 (115)
T ss_dssp HHHHTTTC-------HHHHHHHHTTSSSHHH
T ss_pred HHHHHCCC-------HHHHHHHHHcCCCCCc
Confidence 99999998 7999999999888764
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=4.9e-18 Score=124.52 Aligned_cols=93 Identities=23% Similarity=0.190 Sum_probs=83.4
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCcc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLT 164 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 164 (331)
....|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t 92 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKT 92 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCc
Confidence 5567888999999999999999999999999998 99999999999999999999999999999998 9999999999
Q ss_pred HhHHHhcCCCcccccccchhHHHH
Q 043901 165 RLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 165 ~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
|||+|+..++ .++++.|
T Consensus 93 pl~~A~~~~~-------~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGN-------EDLAEIL 109 (110)
T ss_dssp HHHHHHHHTC-------HHHHHHH
T ss_pred HHHHHHHcCC-------HHHHHHh
Confidence 9999999998 6777654
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=56.74 E-value=10 Score=20.64 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=16.2
Q ss_pred hHHHHHHhcCCHHHHHHHH
Q 043901 4 NSLSKFAVRGQWDNIVQAY 22 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll 22 (331)
++++-|+.+||++.++.|=
T Consensus 15 QqiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 5688999999999988763
No 116
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=23.06 E-value=54 Score=23.26 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=17.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHc
Q 043901 4 NSLSKFAVRGQWDNIVQAYEN 24 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~ 24 (331)
.++..|++.|+||.+..+=..
T Consensus 19 ~~ML~aA~~gdWD~Lv~lE~~ 39 (122)
T 3a7m_A 19 QSLLELAQRGEWDLLLQQEVS 39 (122)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHH
Confidence 468899999999999987544
No 117
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=21.34 E-value=64 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=17.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHc
Q 043901 4 NSLSKFAVRGQWDNIVQAYEN 24 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~ 24 (331)
..+..||+.|+||.+..+=..
T Consensus 32 ~~ML~aA~~gdWD~Lv~lE~~ 52 (126)
T 3h3m_A 32 SRMLAAANASNWDLVLNHGQE 52 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHH
Confidence 468899999999999987444
Done!