BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043903
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 76 SIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ 134
S+ DFG VGDG T T+ F+ AV + +G +GG QL VP G WLTGSF LTS+FTLFL
Sbjct: 64 SLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLH 123
Query: 135 KGAVILGSQEL 145
+ AV+L SQ++
Sbjct: 124 RDAVLLASQDI 134
>sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX
PE=1 SV=1
Length = 602
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 74 VMSIKDFGV-GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLF 132
V++I +G GDGTT T +KA+ G +++VP G++ TG+ L S+ TL
Sbjct: 151 VINITQYGAKGDGTTLNTSAIQKAIDACPT-----GCRIDVPAGVFKTGALWLKSDMTLN 205
Query: 133 LQKGAVILGS 142
L +GA +LGS
Sbjct: 206 LLQGATLLGS 215
>sp|Q8DR59|PBPA_STRR6 Penicillin-binding protein 1A OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=pbpA PE=1 SV=1
Length = 719
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 82 VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL 125
VG+G T +V+R + Y+ + N+PEGL+ G F+
Sbjct: 607 VGNGLTVAAKVYRSMMTYLSEGSNP--EDWNIPEGLYRNGEFVF 648
>sp|Q04707|PBPA_STRPN Penicillin-binding protein 1A OS=Streptococcus pneumoniae serotype
4 (strain ATCC BAA-334 / TIGR4) GN=ponA PE=1 SV=2
Length = 719
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 82 VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL 125
VG+G T +V+R + Y+ + N+PEGL+ G F+
Sbjct: 607 VGNGLTVAAKVYRSMMTYLSEGSNP--EDWNIPEGLYRNGEFVF 648
>sp|P25062|CSG_HALVD Cell surface glycoprotein OS=Haloferax volcanii (strain ATCC 29605
/ DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=csg PE=1 SV=1
Length = 827
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 56 ATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPE 115
A+ V G+ QYL +V + + D GV ++T V + A + ++GGT L+ P
Sbjct: 338 ASAVGGIE-TQYLDDSEVDLEVYDAGV----SATAAVGQDATNDITLTIEEGGTTLSSPT 392
Query: 116 GLWLTGS 122
G ++ GS
Sbjct: 393 GQYVVGS 399
>sp|Q52366|TBP_PYRKO TATA-box-binding protein OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=tbp PE=3 SV=1
Length = 190
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 21 IVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKR 71
++ ++K + + T++P + ++ + FSG G FN LP +Y P++
Sbjct: 83 LIEMLKKIGAKFTREPQIDIQNMVFSGDIGMEFNLDAVALILPNCEYEPEQ 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,042,660
Number of Sequences: 539616
Number of extensions: 2142507
Number of successful extensions: 4066
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4062
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)