Query 043903
Match_columns 146
No_of_seqs 227 out of 1140
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5434 PGU1 Endopygalactoruna 99.8 1.3E-20 2.8E-25 169.6 10.0 110 27-146 42-152 (542)
2 PLN02155 polygalacturonase 99.7 3E-17 6.6E-22 143.2 8.5 70 72-145 25-99 (394)
3 PLN02793 Probable polygalactur 99.7 6.1E-17 1.3E-21 143.0 9.3 71 71-145 49-125 (443)
4 PLN02218 polygalacturonase ADP 99.6 5.8E-16 1.3E-20 136.5 9.3 73 70-146 63-141 (431)
5 PLN03010 polygalacturonase 99.6 1.2E-15 2.5E-20 133.9 9.0 71 71-145 43-121 (409)
6 PLN02188 polygalacturonase/gly 99.6 1E-15 2.2E-20 134.0 7.5 69 69-145 31-106 (404)
7 PF12708 Pectate_lyase_3: Pect 99.6 6.7E-15 1.5E-19 113.9 7.0 65 74-141 1-68 (225)
8 PLN03003 Probable polygalactur 99.5 9.9E-14 2.1E-18 123.3 8.0 71 72-144 21-96 (456)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.3 3.8E-12 8.2E-17 112.9 6.2 63 72-138 35-98 (455)
10 TIGR03805 beta_helix_1 paralle 95.8 0.018 3.8E-07 49.1 5.3 44 93-141 1-48 (314)
11 PF12218 End_N_terminal: N ter 95.7 0.015 3.2E-07 39.5 3.4 37 82-124 2-39 (67)
12 PF00041 fn3: Fibronectin type 92.6 0.028 6E-07 36.5 -0.4 23 25-47 58-80 (85)
13 PLN02480 Probable pectinestera 90.3 0.65 1.4E-05 40.5 5.5 52 88-141 58-114 (343)
14 PF03718 Glyco_hydro_49: Glyco 88.4 0.7 1.5E-05 42.9 4.5 35 108-142 232-270 (582)
15 PF07602 DUF1565: Protein of u 87.9 0.96 2.1E-05 37.8 4.7 40 91-135 16-60 (246)
16 PF14592 Chondroitinas_B: Chon 77.8 4.2 9.1E-05 36.7 4.9 42 89-135 3-50 (425)
17 PLN02176 putative pectinestera 77.7 8 0.00017 33.8 6.4 50 89-140 50-103 (340)
18 smart00060 FN3 Fibronectin typ 75.6 1.3 2.8E-05 26.6 0.8 23 24-46 58-80 (83)
19 PLN02773 pectinesterase 74.9 11 0.00025 32.5 6.6 44 90-135 17-63 (317)
20 PLN02304 probable pectinestera 74.5 10 0.00023 33.7 6.4 50 83-135 81-133 (379)
21 PLN02708 Probable pectinestera 73.9 9.9 0.00021 35.3 6.3 46 89-135 252-300 (553)
22 PLN02713 Probable pectinestera 71.3 14 0.00031 34.3 6.7 46 89-135 261-311 (566)
23 PRK10531 acyl-CoA thioesterase 71.2 13 0.00028 33.5 6.3 50 83-134 88-140 (422)
24 PLN02671 pectinesterase 71.0 16 0.00034 32.3 6.6 44 89-134 70-116 (359)
25 PLN02170 probable pectinestera 71.0 13 0.00028 34.5 6.3 51 83-135 231-284 (529)
26 PLN02682 pectinesterase family 68.1 11 0.00024 33.4 5.1 45 89-135 81-128 (369)
27 PLN02201 probable pectinestera 67.4 16 0.00034 33.8 6.1 45 89-135 217-264 (520)
28 PLN02484 probable pectinestera 67.4 19 0.00042 33.6 6.8 46 89-135 283-331 (587)
29 PLN02933 Probable pectinestera 67.1 17 0.00036 33.8 6.2 45 89-135 229-276 (530)
30 PLN02916 pectinesterase family 66.3 20 0.00044 33.0 6.5 46 89-135 198-248 (502)
31 PF01095 Pectinesterase: Pecti 65.8 14 0.0003 31.5 5.1 45 89-135 11-58 (298)
32 cd00063 FN3 Fibronectin type 3 65.5 5.1 0.00011 24.7 1.9 23 25-47 59-81 (93)
33 PLN02488 probable pectinestera 64.8 20 0.00044 33.1 6.3 45 89-135 208-255 (509)
34 PLN02432 putative pectinestera 64.6 16 0.00034 31.3 5.2 45 89-135 22-69 (293)
35 KOG3513 Neural cell adhesion m 64.0 3.4 7.5E-05 41.0 1.2 33 22-55 876-908 (1051)
36 PLN02665 pectinesterase family 63.9 16 0.00034 32.3 5.2 44 89-134 79-125 (366)
37 PRK10123 wcaM putative colanic 63.3 15 0.00033 32.4 4.9 34 71-116 31-64 (464)
38 PLN02416 probable pectinestera 61.6 23 0.00049 32.9 6.0 45 89-135 241-288 (541)
39 KOG0196 Tyrosine kinase, EPH ( 61.2 3.1 6.7E-05 40.7 0.4 27 23-49 498-524 (996)
40 PLN02745 Putative pectinestera 59.2 25 0.00055 32.9 6.0 45 89-135 296-343 (596)
41 PLN02506 putative pectinestera 57.7 22 0.00048 32.9 5.3 45 89-135 243-290 (537)
42 PLN03043 Probable pectinestera 57.6 31 0.00068 31.9 6.2 46 89-135 234-284 (538)
43 PLN02301 pectinesterase/pectin 57.3 39 0.00085 31.4 6.8 45 89-135 247-294 (548)
44 PLN02634 probable pectinestera 56.6 26 0.00056 31.0 5.3 45 89-135 67-114 (359)
45 PLN02990 Probable pectinestera 55.3 26 0.00055 32.7 5.3 45 89-135 270-317 (572)
46 PLN02314 pectinesterase 53.0 46 0.00099 31.1 6.5 45 89-135 289-336 (586)
47 PLN02197 pectinesterase 52.6 43 0.00094 31.4 6.3 45 89-135 286-333 (588)
48 PLN02468 putative pectinestera 51.2 33 0.00071 32.0 5.3 45 89-135 269-316 (565)
49 PLN02995 Probable pectinestera 49.3 60 0.0013 30.1 6.7 46 89-135 234-283 (539)
50 PF11429 Colicin_D: Colicin D; 47.1 35 0.00075 24.7 3.8 56 77-138 9-71 (92)
51 PF09294 Interfer-bind: Interf 45.9 14 0.00029 25.4 1.5 33 26-58 70-102 (106)
52 KOG4221 Receptor mediating net 43.3 45 0.00097 34.3 5.1 29 22-50 673-701 (1381)
53 PLN02313 Pectinesterase/pectin 42.3 60 0.0013 30.4 5.6 45 89-135 286-333 (587)
54 PLN02497 probable pectinestera 41.7 63 0.0014 28.2 5.3 45 89-135 43-90 (331)
55 TIGR03119 one_C_fhcD formylmet 36.2 46 0.001 28.6 3.5 40 82-125 239-282 (287)
56 cd07986 LPLAT_ACT14924-like Ly 35.7 47 0.001 26.0 3.3 27 88-118 83-109 (210)
57 PHA00672 hypothetical protein 35.3 53 0.0012 25.5 3.4 29 109-137 50-85 (152)
58 PLN02217 probable pectinestera 34.9 1.1E+02 0.0023 29.4 6.1 45 89-135 261-308 (670)
59 PF00907 T-box: T-box; InterP 32.9 18 0.0004 28.1 0.6 22 25-46 35-56 (184)
60 KOG2884 26S proteasome regulat 32.7 48 0.001 27.9 3.0 68 41-117 109-177 (259)
61 cd07478 Peptidases_S8_CspA-lik 30.4 74 0.0016 28.4 4.1 42 72-117 151-192 (455)
62 COG4677 PemB Pectin methyleste 29.8 1.4E+02 0.0031 26.7 5.5 46 88-134 92-140 (405)
63 PRK13301 putative L-aspartate 25.1 65 0.0014 27.4 2.6 22 92-116 101-122 (267)
64 PF02741 FTR_C: FTR, proximal 25.0 58 0.0013 25.6 2.1 40 82-125 102-145 (150)
65 PF12508 DUF3714: Protein of u 24.1 1.1E+02 0.0024 24.8 3.7 25 109-133 82-107 (200)
66 PRK02114 formylmethanofuran--t 24.1 2.6E+02 0.0056 24.3 6.0 40 82-125 247-290 (297)
67 cd00182 TBOX T-box DNA binding 23.3 39 0.00084 27.1 0.9 23 24-46 36-58 (188)
68 PF08886 GshA: Glutamate-cyste 23.2 2.6E+02 0.0057 25.3 6.1 55 83-140 56-135 (404)
69 PF01696 Adeno_E1B_55K: Adenov 22.2 2E+02 0.0043 25.8 5.2 34 108-142 64-99 (386)
70 PF10179 DUF2369: Uncharacteri 21.6 48 0.001 28.6 1.2 19 23-41 260-278 (300)
71 smart00425 TBOX Domain first f 21.4 45 0.00097 26.7 0.9 22 25-46 36-57 (190)
72 PF11344 DUF3146: Protein of u 20.5 64 0.0014 22.8 1.4 15 28-42 65-79 (80)
73 PRK15018 1-acyl-sn-glycerol-3- 20.3 1.4E+02 0.003 24.5 3.6 27 89-118 124-150 (245)
74 PRK09979 putative rho operon l 20.1 56 0.0012 19.0 0.9 17 1-17 1-17 (33)
No 1
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.3e-20 Score=169.63 Aligned_cols=110 Identities=30% Similarity=0.434 Sum_probs=100.1
Q ss_pred HhCCCCCCcceeEEEEeeccCCCCCcCCcceeeccCCCCCCCCCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCC
Q 043903 27 ILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGD 105 (146)
Q Consensus 27 ~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~ 105 (146)
.+++.|++.|.+++|.++.++.++.++.++.|. ++.+....++|.+|| ++||.+||++|||+||++|+ .
T Consensus 42 ~~~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca---~ 111 (542)
T COG5434 42 SSNLVPNTALPDTVRSFNAEGSESEDSSPAINI-------KTAATDTAFSVSDDGAVGDGATDNTAAIQAAIDACA---S 111 (542)
T ss_pred ccCccccccCCcceeeeccccccccccccceec-------ccccccceeeeccccccccCCccCHHHHHHHHHhhh---h
Confidence 367889999999999999999999998877663 245566789999999 99999999999999999998 5
Q ss_pred CCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCCCCC
Q 043903 106 KGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK 146 (146)
Q Consensus 106 ~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~d~~ 146 (146)
.+|++|+||+|+|++|+|+|||+|+|++++||||+++.+|+
T Consensus 112 a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 112 AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPK 152 (542)
T ss_pred hcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChh
Confidence 79999999999999999999999999999999999999874
No 2
>PLN02155 polygalacturonase
Probab=99.70 E-value=3e-17 Score=143.18 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=62.2
Q ss_pred CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe----CCCeEEEEccCcEEEeCCCC
Q 043903 72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL----TSNFTLFLQKGAVILGSQEL 145 (146)
Q Consensus 72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L----~SnvtL~l~~gAtL~as~d~ 145 (146)
..++||+||| ++||.+|||+|||+||+++| ++.||++|+||+|+|++|+|+| |||++|+|+ | +|+++.|+
T Consensus 25 ~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC--~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~~d~ 99 (394)
T PLN02155 25 SNVFNVVSFGAKPDGVTDSTAAFLKAWQGAC--GSASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAPEDY 99 (394)
T ss_pred CcEEEhhhcCcCCCCccccHHHHHHHHHHHc--ccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECcccc
Confidence 3679999999 99999999999999997443 2578999999999999999999 899999997 4 88888875
No 3
>PLN02793 Probable polygalacturonase
Probab=99.69 E-value=6.1e-17 Score=143.05 Aligned_cols=71 Identities=28% Similarity=0.514 Sum_probs=64.0
Q ss_pred CCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEEeeEEe----CCCeEEEEccCcEEEeCCC
Q 043903 71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLTGSFIL----TSNFTLFLQKGAVILGSQE 144 (146)
Q Consensus 71 ~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Yltg~l~L----~SnvtL~l~~gAtL~as~d 144 (146)
.+.++||+||| +|||.+|||+|||+||+++| +..+|++|+||+| +|++++|+| +|+++|+++ |+|+|+.|
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC--~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d 124 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC--SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD 124 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHh--ccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence 44789999999 99999999999999999654 2568899999999 599999999 899999997 79999988
Q ss_pred C
Q 043903 145 L 145 (146)
Q Consensus 145 ~ 145 (146)
+
T Consensus 125 ~ 125 (443)
T PLN02793 125 P 125 (443)
T ss_pred h
Confidence 6
No 4
>PLN02218 polygalacturonase ADPG
Probab=99.64 E-value=5.8e-16 Score=136.50 Aligned_cols=73 Identities=33% Similarity=0.446 Sum_probs=63.0
Q ss_pred CCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEEeeEEeC----CCeEEEEccCcEEEeCC
Q 043903 70 KRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLTGSFILT----SNFTLFLQKGAVILGSQ 143 (146)
Q Consensus 70 ~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Yltg~l~L~----SnvtL~l~~gAtL~as~ 143 (146)
.++.++||+||| +|||.+|||+|||+||+++| ++.|+++|+||+| +|+++++.|+ ++++|++ +|+|+|++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aC--s~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~ 138 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKAC--SSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ 138 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhh--hcCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence 456899999999 99999999999999997544 2567889999999 6999999994 7888887 48999998
Q ss_pred CCC
Q 043903 144 ELK 146 (146)
Q Consensus 144 d~~ 146 (146)
|++
T Consensus 139 d~~ 141 (431)
T PLN02218 139 KRS 141 (431)
T ss_pred Chh
Confidence 863
No 5
>PLN03010 polygalacturonase
Probab=99.62 E-value=1.2e-15 Score=133.88 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=60.8
Q ss_pred CCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCC-CcEEEecCC-EEEEeeEEeCC-----CeEEEEccCcEEEeC
Q 043903 71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKG-GTQLNVPEG-LWLTGSFILTS-----NFTLFLQKGAVILGS 142 (146)
Q Consensus 71 ~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~g-g~~V~IP~G-~Yltg~l~L~S-----nvtL~l~~gAtL~as 142 (146)
....+||+||| ++||++|||+|||+||++|| +..+ +++|+||+| +|++++|.|++ +++|+++ |+|+++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac--~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~~ 118 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC--GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVAP 118 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc--cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEcc
Confidence 34689999999 99999999999999999876 1212 379999999 79999999994 7888887 799999
Q ss_pred CCC
Q 043903 143 QEL 145 (146)
Q Consensus 143 ~d~ 145 (146)
+|+
T Consensus 119 ~d~ 121 (409)
T PLN03010 119 SNI 121 (409)
T ss_pred CCh
Confidence 886
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.61 E-value=1e-15 Score=133.97 Aligned_cols=69 Identities=20% Similarity=0.444 Sum_probs=58.8
Q ss_pred CCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeC------CCeEEEEccCcEEEe
Q 043903 69 PKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT------SNFTLFLQKGAVILG 141 (146)
Q Consensus 69 ~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~------SnvtL~l~~gAtL~a 141 (146)
..+..++||+||| +|||.+|||+|||+||+++| ++.||++|+||+|+|++++|+|+ ++++| +|++
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC--~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~ 102 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAAC--ASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKA 102 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHh--ccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEc
Confidence 3455789999999 99999999999999998654 25678899999999999999996 45555 8899
Q ss_pred CCCC
Q 043903 142 SQEL 145 (146)
Q Consensus 142 s~d~ 145 (146)
++|+
T Consensus 103 s~d~ 106 (404)
T PLN02188 103 ATDL 106 (404)
T ss_pred CCCH
Confidence 9886
No 7
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.56 E-value=6.7e-15 Score=113.88 Aligned_cols=65 Identities=32% Similarity=0.513 Sum_probs=52.1
Q ss_pred eEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEee-EEeCCCeEEEEccC-cEEEe
Q 043903 74 VMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGS-FILTSNFTLFLQKG-AVILG 141 (146)
Q Consensus 74 ~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~-l~L~SnvtL~l~~g-AtL~a 141 (146)
.+||++|| ++||.+|||+|||+||+++. ..++++|+||+|+|++.. +.++++++|+.+.+ .+++.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~---~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~ 68 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAA---AAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILF 68 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHC---STTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEE
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcc---cCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEE
Confidence 48999999 99999999999999996554 578999999999999655 99999999999876 34443
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.47 E-value=9.9e-14 Score=123.28 Aligned_cols=71 Identities=25% Similarity=0.477 Sum_probs=58.5
Q ss_pred CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCE-EEEeeEEeCCC---eEEEEccCcEEEeCCC
Q 043903 72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGL-WLTGSFILTSN---FTLFLQKGAVILGSQE 144 (146)
Q Consensus 72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~-Yltg~l~L~Sn---vtL~l~~gAtL~as~d 144 (146)
+..+||++|| +|||.+|||+|||+||++|| ++.++++|+||+|+ |+++++.|+++ ..+.++..++|+++.+
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC--~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~ 96 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK 96 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhh--hccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence 4679999999 99999999999999999965 35688999999994 89999999763 1244555678887654
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.29 E-value=3.8e-12 Score=112.92 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=58.3
Q ss_pred CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcE
Q 043903 72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAV 138 (146)
Q Consensus 72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAt 138 (146)
...+|+++|| ++||.+|+|+|||+||++|. .++.+|.+|+|+|++|+|.|+++++|..++|++
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa----~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt 98 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEAA----RAQTPLALPPGVYRTGPLRLPSGAQLIGVRGAT 98 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHhh----cCCCEEEECCCceecccEEECCCcEEEecCCcE
Confidence 3459999999 99999999999999999986 467899999999999999999999999999996
No 10
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=95.80 E-value=0.018 Score=49.06 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCCCCcEEEecCCEEE-EeeEEeC-CCeEEEEccC--cEEEe
Q 043903 93 FRKAVRYVQAFGDKGGTQLNVPEGLWL-TGSFILT-SNFTLFLQKG--AVILG 141 (146)
Q Consensus 93 ~q~Ai~aa~~~~~~gg~~V~IP~G~Yl-tg~l~L~-SnvtL~l~~g--AtL~a 141 (146)
||+|+++|. .|.+|+||+|+|. .++|.+. ++++|..+.. ++|-+
T Consensus 1 iQ~Ai~~A~-----~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~ 48 (314)
T TIGR03805 1 LQEALIAAQ-----PGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDF 48 (314)
T ss_pred CHhHHhhCC-----CCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEec
Confidence 699999996 6889999999998 5889995 8899987643 45544
No 11
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=95.67 E-value=0.015 Score=39.52 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEEeeEE
Q 043903 82 VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLTGSFI 124 (146)
Q Consensus 82 ~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Yltg~l~ 124 (146)
+|||++|||+||.+++.+.. .|.+|- -.| +|.+.++-
T Consensus 2 ~GDGvtdDt~A~~a~l~a~~-----~g~~ID-g~GlTykVs~lP 39 (67)
T PF12218_consen 2 KGDGVTDDTAAITAALEASP-----VGRKID-GAGLTYKVSSLP 39 (67)
T ss_dssp --CCCCE-HHHHHHHHHHS------TTS-EE--TT-EEEESS--
T ss_pred CCccccCcHHHHHHHHhccC-----CCeEEe-cCCceEEEeeCc
Confidence 69999999999999999775 444444 445 78877653
No 12
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=92.61 E-value=0.028 Score=36.49 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.2
Q ss_pred HHHhCCCCCCcceeEEEEeeccC
Q 043903 25 IKILSLQITKKPVLSLRRVGFSG 47 (146)
Q Consensus 25 ~~~~~L~p~t~y~~~vr~v~~~g 47 (146)
+++.||+|++.|.|.|+++...|
T Consensus 58 ~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 58 YTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp EEEESCCTTSEEEEEEEEEETTE
T ss_pred eeeccCCCCCEEEEEEEEEeCCc
Confidence 46789999999999999988776
No 13
>PLN02480 Probable pectinesterase
Probab=90.34 E-value=0.65 Score=40.52 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc--CcEEEe
Q 043903 88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK--GAVILG 141 (146)
Q Consensus 88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~--gAtL~a 141 (146)
.|=.-||+||+++.. ......+|+|.+|+|. ..+.+ +.+++|..+. ..+|.+
T Consensus 58 g~f~TIQ~AIdaap~-~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~ 114 (343)
T PLN02480 58 GDFTSVQSAIDAVPV-GNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVW 114 (343)
T ss_pred CCcccHHHHHhhCcc-CCCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEc
Confidence 356789999999972 0112236889999998 67777 5678887664 344543
No 14
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=88.40 E-value=0.7 Score=42.91 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=26.8
Q ss_pred CcEEEecCCEEEEee---EEeCCCe-EEEEccCcEEEeC
Q 043903 108 GTQLNVPEGLWLTGS---FILTSNF-TLFLQKGAVILGS 142 (146)
Q Consensus 108 g~~V~IP~G~Yltg~---l~L~Snv-tL~l~~gAtL~as 142 (146)
..+||+++|+|-.|. +.|++|+ ++++++||.+++.
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA 270 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA 270 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE
Confidence 479999999998776 9999985 9999999999875
No 15
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=87.93 E-value=0.96 Score=37.83 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEecCCEEE--E---eeEEeCCCeEEEEcc
Q 043903 91 EVFRKAVRYVQAFGDKGGTQLNVPEGLWL--T---GSFILTSNFTLFLQK 135 (146)
Q Consensus 91 ~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl--t---g~l~L~SnvtL~l~~ 135 (146)
+-|++|++.|. .|.+|+|-+|+|. + -||.++++++|..++
T Consensus 16 ~Ti~~A~~~a~-----~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~ 60 (246)
T PF07602_consen 16 KTITKALQAAQ-----PGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNE 60 (246)
T ss_pred HHHHHHHHhCC-----CCCEEEECCceeccccCCcccEEecCCeEEeecc
Confidence 45899999886 6789999999996 3 478999999997653
No 16
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=77.82 E-value=4.2 Score=36.65 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeC-C-----CeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT-S-----NFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~-S-----nvtL~l~~ 135 (146)
+.++||+|++.|. .|-+|++..|+|.-..|.+. + .++|.-+.
T Consensus 3 s~~~lq~Ai~~a~-----pGD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~ 50 (425)
T PF14592_consen 3 SVAELQSAIDNAK-----PGDTIVLADGTYKDVEIVFKGSGTAAKPITLRAEN 50 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEET-EEEE-S--BTTB-EEEEESS
T ss_pred CHHHHHHHHHhCC-----CCCEEEECCceeecceEEEEecccCCCCEEEEecC
Confidence 5789999999886 78999999999985455552 2 36665543
No 17
>PLN02176 putative pectinesterase
Probab=77.75 E-value=8 Score=33.82 Aligned_cols=50 Identities=6% Similarity=0.131 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc-CcEEE
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK-GAVIL 140 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~-gAtL~ 140 (146)
|=.-||+||+++... .....+|+|.+|+|.- .+.+ +.+++|..+. +.|++
T Consensus 50 df~TIq~AIdavP~~-~~~~~~I~Ik~GvY~E-kV~Ip~~k~~vtl~G~g~~~TiI 103 (340)
T PLN02176 50 YFKTVQSAIDSIPLQ-NQNWIRILIQNGIYRE-KVTIPKEKGYIYMQGKGIEKTII 103 (340)
T ss_pred CccCHHHHHhhchhc-CCceEEEEECCcEEEE-EEEECCCCccEEEEEcCCCceEE
Confidence 466899999999731 1123579999999983 3444 5678888763 23444
No 18
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=75.58 E-value=1.3 Score=26.56 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=18.8
Q ss_pred HHHHhCCCCCCcceeEEEEeecc
Q 043903 24 LIKILSLQITKKPVLSLRRVGFS 46 (146)
Q Consensus 24 ~~~~~~L~p~t~y~~~vr~v~~~ 46 (146)
.+.+.+|+|++.|.|+|++....
T Consensus 58 ~~~i~~L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 58 SYTLTGLKPGTEYEFRVRAVNGA 80 (83)
T ss_pred EEEEeCcCCCCEEEEEEEEEccc
Confidence 45688999999999998877644
No 19
>PLN02773 pectinesterase
Probab=74.86 E-value=11 Score=32.52 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 90 TEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 90 T~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
=.-||+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+.
T Consensus 17 f~TIq~Aida~P~~-~~~~~~I~Ik~G~Y~-E~V~I~~~k~~itl~G~~ 63 (317)
T PLN02773 17 YCTVQDAIDAVPLC-NRCRTVIRVAPGVYR-QPVYVPKTKNLITLAGLS 63 (317)
T ss_pred ccCHHHHHhhchhc-CCceEEEEEeCceEE-EEEEECcCCccEEEEeCC
Confidence 56799999999721 122468999999998 44555 4568887643
No 20
>PLN02304 probable pectinesterase
Probab=74.48 E-value=10 Score=33.66 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=34.6
Q ss_pred CCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 83 GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 83 gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
.||. -|=.-||+||+++.. ......+|+|-+|+|. ..+.+ +++++|..+.
T Consensus 81 ~dGs-Gdf~TIQ~AIdavP~-~~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~g 133 (379)
T PLN02304 81 PNGC-CNFTTVQSAVDAVGN-FSQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQG 133 (379)
T ss_pred CCCC-CCccCHHHHHhhCcc-cCCCcEEEEEeCeEeE-EEEEECCCCCcEEEEecC
Confidence 4443 235679999999972 1223568999999997 34455 6789997764
No 21
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=73.90 E-value=9.9 Score=35.26 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++......+.-+|+|.+|+|.- .+.+ +.|++|..+.
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E-~V~i~~~k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEE-TVRVPLEKKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEe-eeeecCCCccEEEEecC
Confidence 45679999999983112345699999999983 3444 5678887663
No 22
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=71.32 E-value=14 Score=34.34 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhcC--CCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFG--DKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~--~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.... ..+.-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g 311 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPKNKKYLMMIGDG 311 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecCCCceEEEEecC
Confidence 3567999999997321 122368999999997 34455 5678887764
No 23
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=71.21 E-value=13 Score=33.52 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEc
Q 043903 83 GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQ 134 (146)
Q Consensus 83 gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~ 134 (146)
+||.. |=.-||+||+++.........+|+|-+|+|. ..+.+ +.+++|..+
T Consensus 88 ~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~kp~ItL~G~ 140 (422)
T PRK10531 88 GTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAAAPPITLYGT 140 (422)
T ss_pred CCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCCCceEEEEec
Confidence 55532 4567999999864111223468999999998 33555 578999874
No 24
>PLN02671 pectinesterase
Probab=70.99 E-value=16 Score=32.28 Aligned_cols=44 Identities=9% Similarity=0.246 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQ 134 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~ 134 (146)
|=.-||+||+++... .....+|+|-+|+|. ..+.+ +.+++|..+
T Consensus 70 df~TIQ~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~I~~~k~~Itl~G~ 116 (359)
T PLN02671 70 DSLTVQGAVDMVPDY-NSQRVKIYILPGIYR-EKVLVPKSKPYISFIGN 116 (359)
T ss_pred CccCHHHHHHhchhc-CCccEEEEEeCceEE-EEEEECCCCCeEEEEec
Confidence 466799999999731 223468999999997 33445 577888776
No 25
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=70.96 E-value=13 Score=34.49 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=34.0
Q ss_pred CCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 83 GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 83 gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
.||. -|-.-||+||+++........-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 231 ~dGs-G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~nItl~G~g 284 (529)
T PLN02170 231 ADGS-GTHKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTKQKNVMLVGDG 284 (529)
T ss_pred CCCC-CchhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCCCceEEEEEcC
Confidence 3443 24677999999764111234578999999997 34445 5788887764
No 26
>PLN02682 pectinesterase family protein
Probab=68.12 E-value=11 Score=33.36 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ......+|+|-+|+|. ..+.+ +++++|..+.
T Consensus 81 df~TIQ~AIdavP~-~~~~r~vI~Ik~G~Y~-EkV~Ip~~k~~Itl~G~g 128 (369)
T PLN02682 81 DFTTIQAAIDSLPV-INLVRVVIKVNAGTYR-EKVNIPPLKAYITLEGAG 128 (369)
T ss_pred CccCHHHHHhhccc-cCCceEEEEEeCceee-EEEEEeccCceEEEEecC
Confidence 45679999999972 1123468999999997 33444 6788887764
No 27
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=67.44 E-value=16 Score=33.78 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++... ....-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 217 ~f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 264 (520)
T PLN02201 217 NFTTIMDAVLAAPDY-STKRYVIYIKKGVYL-ENVEIKKKKWNIMMVGDG 264 (520)
T ss_pred CccCHHHHHHhchhc-CCCcEEEEEeCceeE-EEEEecCCCceEEEEecC
Confidence 466899999999731 224578999999997 34455 4578887763
No 28
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=67.43 E-value=19 Score=33.62 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|-+|+|.-..+.+ +.|++|..+.
T Consensus 283 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIKKAPE-HSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDG 331 (587)
T ss_pred CcccHHHHHHhccc-cCCCcEEEEEeCCEEEEEEEEECCCCceEEEEecC
Confidence 35679999999973 1223578999999998655666 4678887764
No 29
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=67.06 E-value=17 Score=33.76 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ......+|+|-+|+|. ..+.+ +.+++|..+.
T Consensus 229 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~-E~V~I~~~k~~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAAPN-SSETRFIIYIKGGEYF-ENVELPKKKTMIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhchh-cCCCcEEEEEcCceEE-EEEEecCCCceEEEEEcC
Confidence 45679999999973 1223568999999998 45556 4678887663
No 30
>PLN02916 pectinesterase family protein
Probab=66.32 E-value=20 Score=33.01 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhhhcC--CCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFG--DKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~--~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.... ....-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDRHMKNVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecCCCceEEEEecC
Confidence 4567999999987211 123468999999998 34444 4578887653
No 31
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=65.79 E-value=14 Score=31.46 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|.+|+|. -.+.+ +.+++|..+.
T Consensus 11 df~TIq~Aida~p~-~~~~~~~I~I~~G~Y~-E~V~i~~~k~~v~l~G~~ 58 (298)
T PF01095_consen 11 DFTTIQAAIDAAPD-NNTSRYTIFIKPGTYR-EKVTIPRSKPNVTLIGEG 58 (298)
T ss_dssp SBSSHHHHHHHS-S-SSSS-EEEEE-SEEEE---EEE-STSTTEEEEES-
T ss_pred CccCHHHHHHhchh-cCCceEEEEEeCeeEc-cccEeccccceEEEEecC
Confidence 34569999999982 1123468999999998 23555 3578887653
No 32
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=65.45 E-value=5.1 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.5
Q ss_pred HHHhCCCCCCcceeEEEEeeccC
Q 043903 25 IKILSLQITKKPVLSLRRVGFSG 47 (146)
Q Consensus 25 ~~~~~L~p~t~y~~~vr~v~~~g 47 (146)
+.+.+|.|++.|.|+|++...+|
T Consensus 59 ~~i~~l~p~~~Y~~~v~a~~~~~ 81 (93)
T cd00063 59 YTLTGLKPGTEYEFRVRAVNGGG 81 (93)
T ss_pred EEEccccCCCEEEEEEEEECCCc
Confidence 44788999999999998776543
No 33
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=64.83 E-value=20 Score=33.07 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|.+|+|.- .+.+ +.|++|..+.
T Consensus 208 ~f~TIq~AI~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~nItliGdg 255 (509)
T PLN02488 208 KYNTVNAAIAAAPE-HSRKRFVIYIKTGVYDE-IVRIGSTKPNLTLIGDG 255 (509)
T ss_pred CccCHHHHHHhchh-cCCCcEEEEEeCCeeEE-EEEecCCCccEEEEecC
Confidence 45679999999973 12335689999999983 3445 5688887764
No 34
>PLN02432 putative pectinesterase
Probab=64.63 E-value=16 Score=31.32 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ......+|+|.+|+|. ..+.+ +.+++|..+.
T Consensus 22 ~f~TIq~Aida~p~-~~~~~~~I~I~~G~Y~-E~V~ip~~k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPS-NNSQLVFIWVKPGIYR-EKVVVPADKPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccc-cCCceEEEEEeCceeE-EEEEEeccCceEEEEEcC
Confidence 35679999999972 1123468999999995 33444 5678887753
No 35
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=64.00 E-value=3.4 Score=41.02 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCCCcceeEEEEeeccCCCCCcCCc
Q 043903 22 VTLIKILSLQITKKPVLSLRRVGFSGAEGALFNP 55 (146)
Q Consensus 22 ~~~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~ 55 (146)
-++..+.||+|+|.|.|.||+....| ..+.|..
T Consensus 876 ~~~~~ltgL~~~T~Y~~~vrA~nsaG-~Gp~s~~ 908 (1051)
T KOG3513|consen 876 RTSWRLTGLEPNTKYRFYVRAYTSAG-GGPASSE 908 (1051)
T ss_pred cceEeeeCCCCCceEEEEEEEecCCC-CCCCccc
Confidence 35667899999999999999999998 4444433
No 36
>PLN02665 pectinesterase family protein
Probab=63.92 E-value=16 Score=32.30 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQ 134 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~ 134 (146)
|=.-||+||+++.. ......+|+|.+|+|. ..+.+ +.+++|..+
T Consensus 79 df~TIq~AIdaiP~-~~~~r~vI~Ik~GvY~-EkV~Ip~~kp~Itl~G~ 125 (366)
T PLN02665 79 DFKTITDAIKSIPA-GNTQRVIIDIGPGEYN-EKITIDRSKPFVTLYGS 125 (366)
T ss_pred CccCHHHHHhhCcc-cCCceEEEEEeCcEEE-EEEEecCCCCEEEEEec
Confidence 45679999999972 1123457899999998 34455 567888776
No 37
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=63.27 E-value=15 Score=32.43 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCeeEeeeeccCCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC
Q 043903 71 RKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG 116 (146)
Q Consensus 71 ~~~~~nV~dfG~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G 116 (146)
....+||.||-.-|. -++|.+|+.+ +.+|++|+|
T Consensus 31 ~~~~vni~dy~~~dw----iasfkqaf~e--------~qtvvvpag 64 (464)
T PRK10123 31 ARQSVNINDYNPHDW----IASFKQAFSE--------GQTVVVPAG 64 (464)
T ss_pred CCceeehhhcCcccH----HHHHHHHhcc--------CcEEEecCc
Confidence 446799999863333 3567777764 346666666
No 38
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=61.55 E-value=23 Score=32.86 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++... .....+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 241 ~f~TIq~Ai~a~p~~-~~~r~vI~Ik~GvY~-E~V~i~~~k~~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFAPNN-SNDRIIIYVREGVYE-ENVEIPIYKTNIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhhhhc-CCceEEEEEeCceeE-EEEecCCCCccEEEEecC
Confidence 456799999999731 223467899999997 34444 5688887754
No 39
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=61.20 E-value=3.1 Score=40.67 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHhCCCCCCcceeEEEEeeccCCC
Q 043903 23 TLIKILSLQITKKPVLSLRRVGFSGAE 49 (146)
Q Consensus 23 ~~~~~~~L~p~t~y~~~vr~v~~~g~~ 49 (146)
+..++.||+|+|.|.|+||+....|.-
T Consensus 498 ~~~ti~gL~p~t~YvfqVRarT~aG~G 524 (996)
T KOG0196|consen 498 TTATITGLKPGTVYVFQVRARTAAGYG 524 (996)
T ss_pred ceEEeeccCCCcEEEEEEEEecccCCC
Confidence 456789999999999999998887543
No 40
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=59.21 E-value=25 Score=32.94 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|.+|+|.- .+.+ +.|++|..+.
T Consensus 296 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALAAMPA-KYEGRYVIYVKQGIYDE-TVTVDKKMVNVTMYGDG 343 (596)
T ss_pred CcccHHHHHHhccc-cCCceEEEEEeCCeeEE-EEEEcCCCceEEEEecC
Confidence 45689999999873 12234689999999983 3455 4578887664
No 41
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=57.74 E-value=22 Score=32.92 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ...+.-+|+|.+|+|.-. +.+ +.|++|..+.
T Consensus 243 ~f~TIq~Av~a~p~-~~~~r~vI~Vk~GvY~E~-V~I~~~k~~i~l~G~g 290 (537)
T PLN02506 243 HYRTITEAINEAPN-HSNRRYIIYVKKGVYKEN-IDMKKKKTNIMLVGDG 290 (537)
T ss_pred CccCHHHHHHhchh-cCCCcEEEEEeCCeeeEE-EeccCCCceEEEEEcC
Confidence 45679999999973 123456999999999732 222 5678887653
No 42
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=57.59 E-value=31 Score=31.91 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhhcCC--CCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGD--KGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~--~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++..... .+.-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~~k~~i~l~G~g 284 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE-EYVVVPKNKKNIMLIGDG 284 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCeeeE-EEEEeCCCCCcEEEEecC
Confidence 45679999999973111 12358999999997 34444 5688887764
No 43
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=57.27 E-value=39 Score=31.41 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|-+|+|.- .+.+ +.|++|..+.
T Consensus 247 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~G~Y~E-~V~i~~~k~~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASAPD-NSKTRYVIYVKKGTYKE-NVEIGKKKKNLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhhhh-cCCceEEEEEeCceeeE-EEEecCCCceEEEEecC
Confidence 45779999999983 12234689999999973 4445 4688887664
No 44
>PLN02634 probable pectinesterase
Probab=56.57 E-value=26 Score=30.98 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ......+|+|-+|+|.- .+.+ +++++|..+.
T Consensus 67 df~TIQaAIda~P~-~~~~r~vI~Ik~GvY~E-kV~Ip~~k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPK-NNTMSVTIKINAGFYRE-KVVVPATKPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcc-cCCccEEEEEeCceEEE-EEEEcCCCCeEEEEecC
Confidence 45689999999972 12234689999999973 3444 5678887754
No 45
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=55.25 E-value=26 Score=32.74 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|-.-||+||+++.. .....-+|+|.+|+|.- .+.+ +.|++|..+.
T Consensus 270 ~f~TIq~Av~a~p~-~~~~r~vI~Ik~GvY~E-~V~i~~~k~~i~l~G~g 317 (572)
T PLN02990 270 QYKTINEALNAVPK-ANQKPFVIYIKQGVYNE-KVDVTKKMTHVTFIGDG 317 (572)
T ss_pred CCcCHHHHHhhCcc-cCCceEEEEEeCceeEE-EEEecCCCCcEEEEecC
Confidence 45669999999973 12234689999999983 3445 4678887763
No 46
>PLN02314 pectinesterase
Probab=52.98 E-value=46 Score=31.15 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|-.-||+||+++.. ...+.-+|+|-+|+|.- .+.+ +.|++|..+.
T Consensus 289 ~f~TI~~Av~a~p~-~~~~r~vI~ik~G~Y~E-~V~i~~~k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPK-KSKSRFVIYVKEGTYVE-NVLLDKSKWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccc-cCCceEEEEEcCceEEE-EEEecCCCceEEEEecC
Confidence 35569999999973 12234689999999983 3444 4678887764
No 47
>PLN02197 pectinesterase
Probab=52.58 E-value=43 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|-+|+|.- .+.+ +.|++|..+.
T Consensus 286 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~ni~l~G~g 333 (588)
T PLN02197 286 QFKTISQAVMACPD-KNPGRCIIHIKAGIYNE-QVTIPKKKNNIFMFGDG 333 (588)
T ss_pred CcCCHHHHHHhccc-cCCceEEEEEeCceEEE-EEEccCCCceEEEEEcC
Confidence 45679999999973 12234679999999973 3444 4678887654
No 48
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=51.17 E-value=33 Score=31.96 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ...+.-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 269 ~f~tI~~Av~a~p~-~~~~~~vI~ik~GvY~-E~V~i~~~k~~i~~~G~g 316 (565)
T PLN02468 269 KYKTISEALKDVPE-KSEKRTIIYVKKGVYF-ENVRVEKKKWNVVMVGDG 316 (565)
T ss_pred CccCHHHHHHhchh-cCCCcEEEEEeCCceE-EEEEecCCCCeEEEEecC
Confidence 34679999999973 1234579999999997 34445 4578886653
No 49
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=49.27 E-value=60 Score=30.10 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhhc-CCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAF-GDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~-~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++... ...+..+|+|-+|+|.-. +.+ +.|++|..+.
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~k~~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLNNDDIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCCCCcEEEEEcC
Confidence 456799999998621 122457899999999843 344 5789998764
No 50
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=47.07 E-value=35 Score=24.66 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=29.8
Q ss_pred eeecc-CC-CCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEE-E-ee-EEe--CCCeEEEEccCcE
Q 043903 77 IKDFG-VG-DGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWL-T-GS-FIL--TSNFTLFLQKGAV 138 (146)
Q Consensus 77 V~dfG-~g-DG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl-t-g~-l~L--~SnvtL~l~~gAt 138 (146)
..||| .+ +.....-..|+.||..-- ....+| -.|+|+ . ++ +.+ ..+..+.++.++.
T Consensus 9 a~DFGi~~~~~N~~t~~~F~~aI~~hi----~~~~tv--~~GtYr~~~~skV~~N~~T~~~Vi~d~~G~ 71 (92)
T PF11429_consen 9 AGDFGITGTNWNKETLEEFEDAIKEHI----KNPDTV--EKGTYRRVKDSKVYFNPKTNNVVIIDKDGN 71 (92)
T ss_dssp GGGGT------SHHHHHHHHHHHHHHH----H-TT-E--E--BETTSTT-EEEEETTTTEEEEE-TTS-
T ss_pred ccccCcccCCCChhhHHHHHHHHHHHh----CCCCeE--eccceecCCCcEEEEeCCCCeEEEEcCCCC
Confidence 46899 77 555566678999998765 244554 499998 3 23 333 5677777776554
No 51
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=45.93 E-value=14 Score=25.44 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=20.6
Q ss_pred HHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903 26 KILSLQITKKPVLSLRRVGFSGAEGALFNPATC 58 (146)
Q Consensus 26 ~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~ 58 (146)
.+.+|+|++.|=|+|++....-......+...|
T Consensus 70 ~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C 102 (106)
T PF09294_consen 70 TLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQC 102 (106)
T ss_dssp EEES--TTSEEEEEEEEEECSSTEEEEEBSEEE
T ss_pred EEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEe
Confidence 578999999999999884433233333445667
No 52
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=43.34 E-value=45 Score=34.26 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCCCcceeEEEEeeccCCCC
Q 043903 22 VTLIKILSLQITKKPVLSLRRVGFSGAEG 50 (146)
Q Consensus 22 ~~~~~~~~L~p~t~y~~~vr~v~~~g~~~ 50 (146)
-+.+++.+|+|+|.|.|.+.+...+|.-.
T Consensus 673 ~~~~l~~~Lep~T~Y~vrIsa~t~nGtGp 701 (1381)
T KOG4221|consen 673 TTQYLFNGLEPNTQYRVRISAMTVNGTGP 701 (1381)
T ss_pred hhhhHhhcCCCCceEEEEEEEeccCCCCC
Confidence 35678899999999999888777776554
No 53
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=42.32 E-value=60 Score=30.44 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. ...+.-+|+|-+|+|.- .+.+ +.|++|..+.
T Consensus 286 ~f~TI~~Av~a~p~-~~~~r~vI~ik~GvY~E-~V~i~~~k~ni~l~Gdg 333 (587)
T PLN02313 286 DFTTVAAAVAAAPE-KSNKRFVIHIKAGVYRE-NVEVTKKKKNIMFLGDG 333 (587)
T ss_pred CCccHHHHHHhccc-cCCceEEEEEeCceeEE-EEEeCCCCCeEEEEecC
Confidence 45689999999973 12234699999999973 2333 4577776653
No 54
>PLN02497 probable pectinesterase
Probab=41.65 E-value=63 Score=28.22 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-+|+||+++... .....+|+|-+|+|.- .+.+ +.+++|..+.
T Consensus 43 df~TIq~AIdavP~~-~~~~~~I~Ik~G~Y~E-kV~Ip~~k~~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSN-NKHWFCINVKAGLYRE-KVKIPYDKPFIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhcccc-CCceEEEEEeCcEEEE-EEEecCCCCcEEEEecC
Confidence 356799999999721 1223579999999963 2334 5788887653
No 55
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=36.25 E-value=46 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCCCcchh--HHHHHHHHHHhhhcCCCCCcEEEecCCEE--EEeeEEe
Q 043903 82 VGDGTTST--TEVFRKAVRYVQAFGDKGGTQLNVPEGLW--LTGSFIL 125 (146)
Q Consensus 82 ~gDG~tDd--T~A~q~Ai~aa~~~~~~gg~~V~IP~G~Y--ltg~l~L 125 (146)
+-||.+.+ .+|.+..|++++ .-.+.+-|.+|.| ..|+.+|
T Consensus 239 VIdGl~~~aV~~Amr~Gi~Aa~----~~~Gv~~IsAGNYGGkLG~~~f 282 (287)
T TIGR03119 239 VIDGLNEAAIAEAMRVGILAAT----EIPGVVKITAGNYGGKLGPHHI 282 (287)
T ss_pred EEcCCCHHHHHHHHHHHHHHHh----cCCCeEEEecCccCCCCCcceE
Confidence 56787766 778888999998 2479999999999 4776554
No 56
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=35.74 E-value=47 Score=26.02 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcEEEecCCEE
Q 043903 88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLW 118 (146)
Q Consensus 88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Y 118 (146)
.+.++++++.+... +|+..+++|.|+-
T Consensus 83 ~~~~~~~~~~~~L~----~G~~l~IFPEGtr 109 (210)
T cd07986 83 KNRESLREALRHLK----NGGALIIFPAGRV 109 (210)
T ss_pred hhHHHHHHHHHHHh----CCCEEEEECCccc
Confidence 56678888888886 5788999999984
No 57
>PHA00672 hypothetical protein
Probab=35.32 E-value=53 Score=25.50 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=20.2
Q ss_pred cEEEecCCEEEEeeEEe-------CCCeEEEEccCc
Q 043903 109 TQLNVPEGLWLTGSFIL-------TSNFTLFLQKGA 137 (146)
Q Consensus 109 ~~V~IP~G~Yltg~l~L-------~SnvtL~l~~gA 137 (146)
..+.||+|+-++|.++= +..++++.++++
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~ii~sG~itV~tdge~ 85 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTVLIFSGHATVFIGGEA 85 (152)
T ss_pred EEEeccCceeeeeeeeEeeEEEEecccEEEEeCCcE
Confidence 57999999999987653 344566665443
No 58
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=34.89 E-value=1.1e+02 Score=29.38 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK 135 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~ 135 (146)
|=.-||+||+++.. .....-+|+|-+|+|.- .+.+ +.|++|..+.
T Consensus 261 ~f~TIq~Av~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~Gdg 308 (670)
T PLN02217 261 QYKTINEALNFVPK-KKNTTFVVHIKAGIYKE-YVQVNRSMTHLVFIGDG 308 (670)
T ss_pred CccCHHHHHHhccc-cCCceEEEEEeCCceEE-EEEEcCCCCcEEEEecC
Confidence 45679999999973 12235689999999974 3444 3567776653
No 59
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=32.87 E-value=18 Score=28.07 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=17.5
Q ss_pred HHHhCCCCCCcceeEEEEeecc
Q 043903 25 IKILSLQITKKPVLSLRRVGFS 46 (146)
Q Consensus 25 ~~~~~L~p~t~y~~~vr~v~~~ 46 (146)
+.|+||.|+..|.+.+++.-.+
T Consensus 35 y~vsGL~p~~~Y~i~l~~~~~d 56 (184)
T PF00907_consen 35 YSVSGLDPDSLYSISLHFERVD 56 (184)
T ss_dssp EEEESS-TTSEEEEEEEEEESC
T ss_pred EEecCCCCCcceEEEEEEEEec
Confidence 4689999999999888877655
No 60
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.68 E-value=48 Score=27.94 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=41.7
Q ss_pred EEeeccCCCCCcCCcceeeccCCCCCCCCCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCE
Q 043903 41 RRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGL 117 (146)
Q Consensus 41 r~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~ 117 (146)
|+|..-|..-.++.....+..++ +......+||..|| ..+ +|+.+..=|+++.- ...|...|.||+|-
T Consensus 109 riVvFvGSpi~e~ekeLv~~akr----lkk~~Vaidii~FGE~~~----~~e~l~~fida~N~-~~~gshlv~Vppg~ 177 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEKELVKLAKR----LKKNKVAIDIINFGEAEN----NTEKLFEFIDALNG-KGDGSHLVSVPPGP 177 (259)
T ss_pred EEEEEecCcchhhHHHHHHHHHH----HHhcCeeEEEEEeccccc----cHHHHHHHHHHhcC-CCCCceEEEeCCCc
Confidence 44555554444433322222222 35555679999999 654 48888888998861 12344578999997
No 61
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=30.41 E-value=74 Score=28.45 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=30.5
Q ss_pred CeeEeeeeccCCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCE
Q 043903 72 KVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGL 117 (146)
Q Consensus 72 ~~~~nV~dfG~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~ 117 (146)
+.++|+ .+|...|.+|.+..+++|++++. ...|..|++++|.
T Consensus 151 p~VInl-SlG~~~g~~~g~~~l~~~i~~~~---~~~gv~vV~aaGN 192 (455)
T cd07478 151 PLVINI-SLGTNFGSHDGTSLLERYIDAIS---RLRGIAVVVGAGN 192 (455)
T ss_pred CeEEEE-ccCcCCCCCCCccHHHHHHHHHH---hhCCeEEEEeCCC
Confidence 345665 57844556678889999999887 3347888899884
No 62
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=29.79 E-value=1.4e+02 Score=26.72 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe-CCC--eEEEEc
Q 043903 88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL-TSN--FTLFLQ 134 (146)
Q Consensus 88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L-~Sn--vtL~l~ 134 (146)
++-.-||+|+|++...+......+.|-+|.|.- .+.+ +++ ++|+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCCCCceeEEec
Confidence 566789999999973212224567778999962 2233 222 666554
No 63
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=25.14 E-value=65 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhcCCCCCcEEEecCC
Q 043903 92 VFRKAVRYVQAFGDKGGTQLNVPEG 116 (146)
Q Consensus 92 A~q~Ai~aa~~~~~~gg~~V~IP~G 116 (146)
+|.+.+.+++ ..+|++||||.|
T Consensus 101 ~~~~~l~~~A---~~~g~~i~ipSG 122 (267)
T PRK13301 101 ALRARLIAAA---EAGGARIRVPAG 122 (267)
T ss_pred HHHHHHHHHH---HhCCCEEEEeCh
Confidence 4455555544 358999999999
No 64
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=24.96 E-value=58 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCCcc--hhHHHHHHHHHHhhhcCCCCCcEEEecCCEE--EEeeEEe
Q 043903 82 VGDGTT--STTEVFRKAVRYVQAFGDKGGTQLNVPEGLW--LTGSFIL 125 (146)
Q Consensus 82 ~gDG~t--DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Y--ltg~l~L 125 (146)
+-||.+ .-.+|.+..|++++ ...+.+.|.+|.| ..|+.+|
T Consensus 102 VIdGl~~~av~~Amr~Gi~Aa~----~~~Gv~~IsAGNYGGkLG~~~f 145 (150)
T PF02741_consen 102 VIDGLSEEAVAEAMRAGIEAAC----AVPGVVRISAGNYGGKLGPYHF 145 (150)
T ss_dssp EEEESSHHHHHHHHHHHHHHHT----TSTTEEEEE---STTSSSSEEE
T ss_pred EEcCCCHHHHHHHHHHHHHHHh----cCCCeEEEecCCcCCccCccee
Confidence 445544 33456777788877 4679999999999 4677654
No 65
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=24.10 E-value=1.1e+02 Score=24.84 Aligned_cols=25 Identities=16% Similarity=0.398 Sum_probs=18.3
Q ss_pred cEEEecCCEEEEeeEEeCCC-eEEEE
Q 043903 109 TQLNVPEGLWLTGSFILTSN-FTLFL 133 (146)
Q Consensus 109 ~~V~IP~G~Yltg~l~L~Sn-vtL~l 133 (146)
+-++||+|+|+.|...|..+ +.|.|
T Consensus 82 ~g~~IPkgt~l~G~~~~~~~Rl~i~I 107 (200)
T PF12508_consen 82 GGILIPKGTYLYGVASFQGQRLLITI 107 (200)
T ss_pred CCEEeCCCCEEEEEEeeeccEEEEEE
Confidence 34788999999998888653 55544
No 66
>PRK02114 formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional
Probab=24.05 E-value=2.6e+02 Score=24.31 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=29.4
Q ss_pred CCCCcc--hhHHHHHHHHHHhhhcCCCCCcEEEecCCEE--EEeeEEe
Q 043903 82 VGDGTT--STTEVFRKAVRYVQAFGDKGGTQLNVPEGLW--LTGSFIL 125 (146)
Q Consensus 82 ~gDG~t--DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Y--ltg~l~L 125 (146)
+-||.+ +-.+|.+..|++++ .-.+.+-|.+|.| ..|+.+|
T Consensus 247 VIdGl~~~aV~~Amr~Gi~Aa~----~~~Gv~~IsAGNYGGkLG~~~f 290 (297)
T PRK02114 247 VIDGLDEEAVAEAMRAGIEAAC----AVPGVVKISAGNYGGKLGPHHF 290 (297)
T ss_pred EEcCCCHHHHHHHHHHHHHHHh----cCCCeEEEecCCCCCccCceee
Confidence 456655 34567888888887 2479999999999 4777665
No 67
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=23.31 E-value=39 Score=27.12 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=18.9
Q ss_pred HHHHhCCCCCCcceeEEEEeecc
Q 043903 24 LIKILSLQITKKPVLSLRRVGFS 46 (146)
Q Consensus 24 ~~~~~~L~p~t~y~~~vr~v~~~ 46 (146)
.+.++||.|+.+|.+.++++..|
T Consensus 36 ~~~vsGLdp~~~Y~v~l~~~~~D 58 (188)
T cd00182 36 KVKVSGLDPNALYSVLMDLVPVD 58 (188)
T ss_pred EEEEeCCCcccceEEEEEEEEcC
Confidence 35689999999999888777665
No 68
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=23.15 E-value=2.6e+02 Score=25.30 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCE-----E------------------EEeeEE--eCCCeEEEEccCc
Q 043903 83 GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGL-----W------------------LTGSFI--LTSNFTLFLQKGA 137 (146)
Q Consensus 83 gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~-----Y------------------ltg~l~--L~SnvtL~l~~gA 137 (146)
.+......+|+|+||...| ......++||... | .+|++. ++.+++|.+..|.
T Consensus 56 ~~~~plavqa~~~aiek~c---p~a~~iLlIPEnHTRN~fYl~nv~~L~~I~~~AG~~VriGsl~~~i~e~~~l~l~~G~ 132 (404)
T PF08886_consen 56 PEFLPLAVQAAMAAIEKIC---PEAKNILLIPENHTRNTFYLENVAQLKRILRQAGFEVRIGSLDPEITEPTELELPSGE 132 (404)
T ss_dssp GGGHHHHHHHHHHHHHHHS---TT-SEEEEEE-S-SS-HHHHHHHHHHHHHHHHTT-EEEEEE--TT--S-EEEE-SSS-
T ss_pred HHHHHHHHHHHHHHHHHhC---cccceEEEecCCCcccHHHHHHHHHHHHHHHHcCceEEEcCCCccccCCeEEecCCCC
Confidence 3455678899999998876 3456889999761 3 357775 6677777777776
Q ss_pred EEE
Q 043903 138 VIL 140 (146)
Q Consensus 138 tL~ 140 (146)
+|.
T Consensus 133 ~l~ 135 (404)
T PF08886_consen 133 TLT 135 (404)
T ss_dssp EEE
T ss_pred eEE
Confidence 654
No 69
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=22.19 E-value=2e+02 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=25.2
Q ss_pred CcEEEecCC-EEE-EeeEEeCCCeEEEEccCcEEEeC
Q 043903 108 GTQLNVPEG-LWL-TGSFILTSNFTLFLQKGAVILGS 142 (146)
Q Consensus 108 g~~V~IP~G-~Yl-tg~l~L~SnvtL~l~~gAtL~as 142 (146)
.++|.+-|| +|. ..++.+++...+... ||+|+..
T Consensus 64 haKVaL~Pg~~Y~i~~~V~I~~~cYIiGn-GA~V~v~ 99 (386)
T PF01696_consen 64 HAKVALRPGAVYVIRKPVNIRSCCYIIGN-GATVRVN 99 (386)
T ss_pred cCEEEeCCCCEEEEeeeEEecceEEEECC-CEEEEEe
Confidence 356666666 698 589999998888554 8988763
No 70
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=21.57 E-value=48 Score=28.61 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.9
Q ss_pred HHHHHhCCCCCCcceeEEE
Q 043903 23 TLIKILSLQITKKPVLSLR 41 (146)
Q Consensus 23 ~~~~~~~L~p~t~y~~~vr 41 (146)
+..+|.||+|.+.|.|.|-
T Consensus 260 ~tetI~~L~PG~~Yl~dV~ 278 (300)
T PF10179_consen 260 TTETIKGLKPGTTYLFDVY 278 (300)
T ss_pred ceeecccCCCCcEEEEEEE
Confidence 4568999999999999553
No 71
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=21.42 E-value=45 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=18.4
Q ss_pred HHHhCCCCCCcceeEEEEeecc
Q 043903 25 IKILSLQITKKPVLSLRRVGFS 46 (146)
Q Consensus 25 ~~~~~L~p~t~y~~~vr~v~~~ 46 (146)
+.++||.|+..|.+.++++-.|
T Consensus 36 ~~vsGLdp~~~Y~v~l~~~~~d 57 (190)
T smart00425 36 YKVSGLDPNALYSVLMDLVPVD 57 (190)
T ss_pred EEEeCCCccCcEEEEEEEEEcc
Confidence 5689999999999888777655
No 72
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=20.52 E-value=64 Score=22.75 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=13.5
Q ss_pred hCCCCCCcceeEEEE
Q 043903 28 LSLQITKKPVLSLRR 42 (146)
Q Consensus 28 ~~L~p~t~y~~~vr~ 42 (146)
..|+|.-.|.||||+
T Consensus 65 Y~LEpGgdY~Ftira 79 (80)
T PF11344_consen 65 YQLEPGGDYSFTIRA 79 (80)
T ss_pred eeccCCCceEEEEec
Confidence 679999999999985
No 73
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=20.33 E-value=1.4e+02 Score=24.45 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEecCCEE
Q 043903 89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLW 118 (146)
Q Consensus 89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Y 118 (146)
+-++++++.+.+. +.|...+++|.|+-
T Consensus 124 ~~~~l~~~~~~l~---~~g~sv~IFPEGTR 150 (245)
T PRK15018 124 AHGTIAEVVNHFK---KRRISIWMFPEGTR 150 (245)
T ss_pred HHHHHHHHHHHHH---hCCCEEEEECCccC
Confidence 3456777777775 23445789999963
No 74
>PRK09979 putative rho operon leader peptide; Provisional
Probab=20.06 E-value=56 Score=18.99 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.3
Q ss_pred CccccccCCCCCcchhh
Q 043903 1 MKLEKLKGNFSRPSRAT 17 (146)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (146)
|.-|.|.|+--.|||+.
T Consensus 1 mrseqisgsslnpscrf 17 (33)
T PRK09979 1 MRSEQISGSSLNPSCRF 17 (33)
T ss_pred CccccccCCcCCccccc
Confidence 67789999999999874
Done!