Query 043907
Match_columns 330
No_of_seqs 439 out of 1237
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 09:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 6.7E-42 1.5E-46 279.1 27.5 322 2-329 78-448 (485)
2 KOG0254 Predicted transporter 100.0 2E-35 4.4E-40 252.4 28.7 323 2-328 107-475 (513)
3 TIGR00887 2A0109 phosphate:H+ 100.0 9.7E-36 2.1E-40 254.4 23.7 316 2-328 74-482 (502)
4 TIGR01299 synapt_SV2 synaptic 100.0 1.5E-34 3.2E-39 250.9 25.8 309 2-327 220-726 (742)
5 PF00083 Sugar_tr: Sugar (and 100.0 7E-40 1.5E-44 277.5 -16.8 321 1-329 63-430 (451)
6 PRK10077 xylE D-xylose transpo 100.0 1.9E-32 4.1E-37 234.0 28.3 311 2-327 73-449 (479)
7 KOG0253 Synaptic vesicle trans 100.0 1E-32 2.2E-37 211.4 21.4 308 2-328 131-512 (528)
8 TIGR00898 2A0119 cation transp 100.0 9.2E-32 2E-36 231.0 24.1 305 1-327 144-487 (505)
9 PRK10642 proline/glycine betai 100.0 1.8E-31 3.9E-36 227.4 23.2 276 2-313 75-406 (490)
10 TIGR00879 SP MFS transporter, 100.0 2.4E-30 5.1E-35 221.6 27.8 321 2-327 89-462 (481)
11 PRK09952 shikimate transporter 100.0 3.4E-29 7.5E-34 210.5 23.3 268 2-312 82-407 (438)
12 PRK10406 alpha-ketoglutarate t 100.0 1.3E-28 2.7E-33 207.1 22.2 263 2-313 81-400 (432)
13 TIGR00890 2A0111 Oxalate/Forma 100.0 3.8E-28 8.2E-33 201.5 23.1 282 1-329 55-376 (377)
14 PRK12307 putative sialic acid 100.0 5.5E-28 1.2E-32 203.6 23.4 276 2-314 71-386 (426)
15 TIGR00891 2A0112 putative sial 100.0 7.3E-28 1.6E-32 201.7 22.9 286 2-313 65-392 (405)
16 TIGR02332 HpaX 4-hydroxyphenyl 100.0 4E-28 8.7E-33 202.4 21.0 297 2-323 61-409 (412)
17 KOG0252 Inorganic phosphate tr 100.0 1.9E-29 4.1E-34 199.2 10.5 315 2-329 102-492 (538)
18 PRK11551 putative 3-hydroxyphe 100.0 2.9E-27 6.3E-32 197.9 21.4 265 2-313 68-372 (406)
19 COG2814 AraJ Arabinose efflux 100.0 3.8E-27 8.3E-32 187.3 20.5 271 1-326 65-377 (394)
20 PRK11663 regulatory protein Uh 100.0 3.5E-27 7.5E-32 198.4 20.7 295 2-327 76-416 (434)
21 TIGR00883 2A0106 metabolite-pr 100.0 7.8E-27 1.7E-31 194.8 22.5 279 2-324 53-389 (394)
22 TIGR00903 2A0129 major facilit 100.0 1.1E-26 2.3E-31 190.0 22.3 270 2-327 44-357 (368)
23 PRK15075 citrate-proton sympor 100.0 6.7E-27 1.4E-31 196.8 21.2 267 2-314 74-397 (434)
24 KOG0255 Synaptic vesicle trans 100.0 3.6E-26 7.9E-31 196.8 25.2 288 1-310 135-467 (521)
25 COG2271 UhpC Sugar phosphate p 100.0 1.1E-26 2.4E-31 182.5 17.5 297 2-327 82-426 (448)
26 TIGR00893 2A0114 d-galactonate 99.9 1.7E-26 3.6E-31 193.0 19.4 301 2-327 47-391 (399)
27 TIGR00895 2A0115 benzoate tran 99.9 3.9E-26 8.5E-31 190.9 21.2 288 2-308 70-397 (398)
28 PRK09705 cynX putative cyanate 99.9 1.4E-25 3E-30 186.3 23.2 267 1-324 61-370 (393)
29 PRK09556 uhpT sugar phosphate 99.9 8.5E-26 1.8E-30 191.8 21.0 296 2-327 82-441 (467)
30 PRK11273 glpT sn-glycerol-3-ph 99.9 1.2E-25 2.6E-30 190.1 21.7 296 2-328 81-428 (452)
31 PRK03545 putative arabinose tr 99.9 2.2E-25 4.8E-30 185.3 22.2 269 2-327 62-372 (390)
32 PRK03893 putative sialic acid 99.9 3E-25 6.5E-30 190.5 23.1 306 2-321 73-439 (496)
33 PRK14995 methyl viologen resis 99.9 1.5E-25 3.2E-30 191.3 20.7 291 2-311 59-413 (495)
34 TIGR00881 2A0104 phosphoglycer 99.9 2.2E-25 4.8E-30 185.1 17.8 288 1-315 47-376 (379)
35 TIGR00900 2A0121 H+ Antiporter 99.9 5.1E-25 1.1E-29 182.0 19.3 266 2-313 52-365 (365)
36 TIGR00899 2A0120 sugar efflux 99.9 2.3E-24 4.9E-29 178.8 21.9 271 2-327 51-366 (375)
37 PRK10091 MFS transport protein 99.9 4.3E-24 9.4E-29 176.9 21.8 267 2-324 56-365 (382)
38 PRK05122 major facilitator sup 99.9 1.3E-23 2.8E-28 175.5 23.6 266 1-327 68-381 (399)
39 PRK03699 putative transporter; 99.9 7.5E-24 1.6E-28 176.3 21.9 271 2-327 60-372 (394)
40 PRK10213 nepI ribonucleoside t 99.9 1.3E-23 2.8E-28 174.3 23.0 265 2-323 73-379 (394)
41 TIGR00711 efflux_EmrB drug res 99.9 1.5E-24 3.3E-29 185.8 17.6 290 2-311 55-410 (485)
42 PRK12382 putative transporter; 99.9 2E-23 4.4E-28 173.8 23.5 266 1-327 68-381 (392)
43 TIGR00894 2A0114euk Na(+)-depe 99.9 2.3E-23 4.9E-28 177.3 22.4 296 2-328 94-443 (465)
44 KOG2532 Permease of the major 99.9 2.8E-23 6.1E-28 172.3 22.0 290 2-328 91-440 (466)
45 PRK09874 drug efflux system pr 99.9 2.2E-23 4.9E-28 174.7 21.0 276 2-328 72-391 (408)
46 PRK10489 enterobactin exporter 99.9 4E-24 8.8E-29 179.4 16.1 273 2-324 70-388 (417)
47 TIGR00897 2A0118 polyol permea 99.9 5.3E-23 1.1E-27 171.6 22.4 281 2-327 66-393 (402)
48 TIGR00712 glpT glycerol-3-phos 99.9 1.1E-23 2.3E-28 177.6 18.4 298 1-326 78-424 (438)
49 cd06174 MFS The Major Facilita 99.9 6.3E-23 1.4E-27 168.6 21.7 252 2-328 52-345 (352)
50 TIGR00710 efflux_Bcr_CflA drug 99.9 4.5E-23 9.7E-28 171.7 20.7 265 2-313 58-363 (385)
51 PRK15402 multidrug efflux syst 99.9 5.9E-23 1.3E-27 171.8 21.3 269 2-316 66-375 (406)
52 PRK03633 putative MFS family t 99.9 2.7E-22 5.9E-27 166.3 23.0 266 2-327 59-364 (381)
53 TIGR00892 2A0113 monocarboxyla 99.9 2.6E-23 5.6E-28 175.6 16.7 296 2-327 72-413 (455)
54 PLN00028 nitrate transmembrane 99.9 6.5E-23 1.4E-27 174.0 18.7 280 2-327 89-425 (476)
55 PF07690 MFS_1: Major Facilita 99.9 1.5E-23 3.3E-28 172.3 13.6 260 2-302 50-352 (352)
56 TIGR00902 2A0127 phenyl propri 99.9 6.3E-22 1.4E-26 164.0 22.5 274 2-328 57-372 (382)
57 PRK10504 putative transporter; 99.9 7E-22 1.5E-26 168.6 23.2 290 2-313 63-417 (471)
58 PRK11043 putative transporter; 99.9 6E-22 1.3E-26 165.5 21.9 262 2-313 59-359 (401)
59 PRK15034 nitrate/nitrite trans 99.9 1.1E-21 2.3E-26 161.9 21.4 273 2-327 88-446 (462)
60 TIGR00896 CynX cyanate transpo 99.9 7.2E-22 1.6E-26 162.3 20.2 256 2-313 53-350 (355)
61 PRK11102 bicyclomycin/multidru 99.9 1.2E-21 2.6E-26 162.5 20.4 257 2-304 44-342 (377)
62 TIGR00882 2A0105 oligosacchari 99.9 1.9E-21 4.1E-26 162.1 21.5 281 2-327 56-387 (396)
63 PRK11010 ampG muropeptide tran 99.9 1.3E-21 2.8E-26 166.4 20.6 281 2-327 63-395 (491)
64 TIGR00889 2A0110 nucleoside tr 99.9 2.8E-21 6E-26 161.4 22.1 279 2-326 56-393 (418)
65 PRK15011 sugar efflux transpor 99.9 2E-21 4.4E-26 161.6 21.2 268 3-326 70-382 (393)
66 COG2223 NarK Nitrate/nitrite t 99.9 1.3E-21 2.8E-26 154.4 18.7 280 2-328 67-394 (417)
67 PRK10473 multidrug efflux syst 99.9 2.5E-21 5.4E-26 161.3 21.5 256 2-314 56-352 (392)
68 PRK11646 multidrug resistance 99.9 1.7E-21 3.7E-26 162.0 20.2 256 2-312 64-360 (400)
69 KOG1330 Sugar transporter/spin 99.9 4.8E-23 1.1E-27 163.8 10.2 276 1-312 85-413 (493)
70 PRK11128 putative 3-phenylprop 99.9 6.3E-21 1.4E-25 158.1 22.2 273 2-327 57-371 (382)
71 PRK11195 lysophospholipid tran 99.9 7.5E-21 1.6E-25 157.8 20.7 261 2-313 56-357 (393)
72 PRK09528 lacY galactoside perm 99.9 5.1E-21 1.1E-25 160.7 19.9 135 177-326 258-394 (420)
73 PRK15403 multidrug efflux syst 99.9 1E-20 2.2E-25 158.1 21.5 277 2-324 69-386 (413)
74 TIGR00886 2A0108 nitrite extru 99.9 1.5E-21 3.2E-26 161.4 14.9 259 2-297 55-365 (366)
75 PRK11652 emrD multidrug resist 99.9 1.4E-20 3E-25 157.0 20.6 260 2-312 61-361 (394)
76 PRK10054 putative transporter; 99.9 2.7E-21 5.8E-26 160.6 15.9 271 2-326 61-375 (395)
77 PRK10133 L-fucose transporter; 99.9 1.5E-20 3.2E-25 157.8 19.8 267 2-321 79-419 (438)
78 PRK08633 2-acyl-glycerophospho 99.9 2.2E-20 4.8E-25 175.7 21.5 266 1-310 64-383 (1146)
79 TIGR00885 fucP L-fucose:H+ sym 99.9 4E-20 8.6E-25 153.9 19.0 255 2-312 56-382 (410)
80 PRK06814 acylglycerophosphoeth 99.8 7.1E-20 1.5E-24 171.8 19.6 277 1-312 69-397 (1140)
81 PRK11902 ampG muropeptide tran 99.8 4.8E-19 1.1E-23 147.9 20.7 278 2-327 50-382 (402)
82 KOG2504 Monocarboxylate transp 99.8 7.9E-20 1.7E-24 153.7 15.3 304 1-326 98-467 (509)
83 TIGR00901 2A0125 AmpG-related 99.8 1.5E-19 3.3E-24 148.7 16.3 259 2-295 39-355 (356)
84 KOG2533 Permease of the major 99.8 4.3E-19 9.4E-24 147.9 17.2 205 2-225 99-356 (495)
85 PF05977 MFS_3: Transmembrane 99.8 8.8E-19 1.9E-23 148.2 19.1 276 1-324 62-383 (524)
86 TIGR00792 gph sugar (Glycoside 99.8 2.3E-18 5E-23 145.7 17.9 264 1-313 52-382 (437)
87 TIGR02718 sider_RhtX_FptX side 99.8 7.3E-18 1.6E-22 140.4 19.8 225 57-327 156-383 (390)
88 KOG3764 Vesicular amine transp 99.8 7E-19 1.5E-23 137.4 11.9 276 1-326 123-445 (464)
89 KOG2615 Permease of the major 99.8 3.4E-18 7.3E-23 132.9 13.1 279 1-311 85-414 (451)
90 COG2807 CynX Cyanate permease 99.8 1.1E-16 2.4E-21 124.2 20.8 257 1-313 64-361 (395)
91 PF06609 TRI12: Fungal trichot 99.8 9.4E-17 2E-21 135.7 21.6 294 2-311 96-467 (599)
92 TIGR00924 yjdL_sub1_fam amino 99.8 5.6E-16 1.2E-20 131.5 22.8 310 2-322 66-455 (475)
93 PRK10207 dipeptide/tripeptide 99.7 6.2E-16 1.4E-20 131.3 21.9 293 2-308 68-438 (489)
94 PF03825 Nuc_H_symport: Nucleo 99.7 1.2E-15 2.5E-20 125.7 22.2 264 2-313 55-366 (400)
95 COG0738 FucP Fucose permease [ 99.7 1.5E-15 3.3E-20 119.7 17.7 270 1-326 65-400 (422)
96 KOG4686 Predicted sugar transp 99.7 2.6E-15 5.5E-20 112.6 17.3 137 160-313 278-416 (459)
97 PTZ00207 hypothetical protein; 99.7 1.2E-15 2.5E-20 129.9 16.9 307 2-329 79-546 (591)
98 PF11700 ATG22: Vacuole efflux 99.7 8.2E-15 1.8E-19 123.0 20.7 175 146-327 281-460 (477)
99 PF13347 MFS_2: MFS/sugar tran 99.7 2.7E-15 5.9E-20 126.4 18.1 164 132-313 215-386 (428)
100 TIGR00805 oat sodium-independe 99.6 6.6E-16 1.4E-20 134.8 9.2 214 2-228 86-415 (633)
101 PRK09584 tppB putative tripept 99.6 5.2E-14 1.1E-18 120.3 20.0 290 2-306 75-439 (500)
102 PRK10429 melibiose:sodium symp 99.6 1.4E-14 3E-19 123.5 16.3 144 160-313 245-395 (473)
103 PRK09669 putative symporter Ya 99.6 2.6E-14 5.7E-19 121.0 17.4 116 186-313 268-390 (444)
104 TIGR00806 rfc RFC reduced fola 99.6 5.4E-15 1.2E-19 120.7 12.2 286 2-305 80-409 (511)
105 COG2270 Permeases of the major 99.6 1.1E-13 2.3E-18 110.2 18.8 150 150-314 256-406 (438)
106 TIGR01272 gluP glucose/galacto 99.6 9.8E-14 2.1E-18 111.2 18.5 155 151-323 145-303 (310)
107 TIGR01301 GPH_sucrose GPH fami 99.6 1.1E-13 2.4E-18 115.6 18.8 165 148-313 260-446 (477)
108 PF01306 LacY_symp: LacY proto 99.6 7.4E-14 1.6E-18 113.2 16.3 153 160-327 234-392 (412)
109 TIGR00788 fbt folate/biopterin 99.6 4.1E-15 8.9E-20 125.9 9.4 290 2-313 78-415 (468)
110 PRK11663 regulatory protein Uh 99.6 4.1E-14 8.8E-19 119.5 15.0 164 146-324 23-187 (434)
111 COG2211 MelB Na+/melibiose sym 99.6 6.5E-13 1.4E-17 108.9 19.1 150 151-313 241-398 (467)
112 COG2271 UhpC Sugar phosphate p 99.6 2.6E-14 5.7E-19 113.5 10.1 170 143-327 26-198 (448)
113 TIGR02332 HpaX 4-hydroxyphenyl 99.5 1.8E-13 3.9E-18 114.6 15.0 166 145-325 7-179 (412)
114 PRK09848 glucuronide transport 99.5 4.3E-13 9.3E-18 113.9 17.4 141 160-313 242-390 (448)
115 PRK10213 nepI ribonucleoside t 99.5 2E-13 4.3E-18 113.7 14.9 148 164-326 38-186 (394)
116 TIGR01299 synapt_SV2 synaptic 99.5 1.7E-13 3.6E-18 120.5 14.9 134 163-311 184-317 (742)
117 TIGR00895 2A0115 benzoate tran 99.5 2.3E-13 5E-18 113.9 14.6 159 147-320 18-177 (398)
118 COG2814 AraJ Arabinose efflux 99.5 2.7E-13 5.9E-18 108.8 13.9 166 148-328 15-181 (394)
119 PRK03545 putative arabinose tr 99.5 2.4E-13 5.1E-18 113.4 14.2 149 164-327 27-176 (390)
120 PRK10054 putative transporter; 99.5 3.9E-13 8.5E-18 112.0 15.2 161 150-326 11-173 (395)
121 TIGR00710 efflux_Bcr_CflA drug 99.5 3.4E-13 7.3E-18 112.4 14.8 153 158-325 17-170 (385)
122 PRK14995 methyl viologen resis 99.5 3.2E-13 6.9E-18 115.9 14.9 166 146-326 6-173 (495)
123 PRK10504 putative transporter; 99.5 4.2E-13 9.1E-18 114.8 15.5 162 148-324 12-174 (471)
124 PRK03699 putative transporter; 99.5 5.7E-13 1.2E-17 111.2 15.7 167 144-325 5-173 (394)
125 TIGR00891 2A0112 putative sial 99.5 7.2E-13 1.6E-17 111.2 16.0 155 144-313 10-164 (405)
126 PRK11462 putative transporter; 99.5 4.2E-12 9.1E-17 107.7 19.9 116 186-313 267-389 (460)
127 PRK12307 putative sialic acid 99.5 6.3E-13 1.4E-17 112.3 14.9 157 148-319 20-177 (426)
128 PRK15462 dipeptide/tripeptide 99.5 1.2E-12 2.7E-17 109.8 15.6 153 155-321 18-175 (493)
129 PRK03893 putative sialic acid 99.5 8.5E-13 1.8E-17 113.8 15.0 156 146-316 20-175 (496)
130 PRK10473 multidrug efflux syst 99.5 1E-12 2.2E-17 109.7 14.9 166 146-326 3-169 (392)
131 TIGR00711 efflux_EmrB drug res 99.5 4.9E-13 1.1E-17 115.0 13.0 162 148-324 4-166 (485)
132 PLN00028 nitrate transmembrane 99.5 6.4E-13 1.4E-17 113.3 12.9 158 153-326 43-210 (476)
133 PRK11551 putative 3-hydroxyphe 99.5 1.5E-12 3.3E-17 109.3 14.8 158 151-323 20-178 (406)
134 PRK15403 multidrug efflux syst 99.5 1.2E-12 2.5E-17 109.8 13.6 150 162-326 32-182 (413)
135 PRK10091 MFS transport protein 99.5 2.1E-12 4.6E-17 107.4 14.0 161 151-326 8-169 (382)
136 TIGR00900 2A0121 H+ Antiporter 99.4 2.4E-12 5.3E-17 106.4 13.7 155 160-324 13-168 (365)
137 cd06174 MFS The Major Facilita 99.4 4.5E-12 9.7E-17 104.3 15.1 154 157-325 10-164 (352)
138 PF07690 MFS_1: Major Facilita 99.4 1.6E-12 3.6E-17 106.9 12.3 153 160-327 10-164 (352)
139 TIGR00924 yjdL_sub1_fam amino 99.4 5.6E-12 1.2E-16 107.3 15.6 159 149-322 13-179 (475)
140 PRK09874 drug efflux system pr 99.4 7.8E-12 1.7E-16 105.1 16.3 157 154-326 22-184 (408)
141 TIGR00903 2A0129 major facilit 99.4 2.6E-12 5.7E-17 105.6 12.9 148 163-326 8-156 (368)
142 TIGR00893 2A0114 d-galactonate 99.4 1.9E-12 4.1E-17 108.3 12.3 149 162-325 10-159 (399)
143 PRK10489 enterobactin exporter 99.4 4.4E-12 9.5E-17 106.8 14.0 154 160-323 31-185 (417)
144 PRK15402 multidrug efflux syst 99.4 6.1E-12 1.3E-16 105.6 14.9 152 160-326 27-179 (406)
145 PRK03633 putative MFS family t 99.4 5.1E-12 1.1E-16 105.0 14.2 150 148-312 8-157 (381)
146 PRK11652 emrD multidrug resist 99.4 7.8E-12 1.7E-16 104.5 15.2 149 161-324 23-172 (394)
147 TIGR00892 2A0113 monocarboxyla 99.4 5.5E-12 1.2E-16 107.1 14.4 148 163-326 36-185 (455)
148 PRK15034 nitrate/nitrite trans 99.4 3.8E-12 8.1E-17 105.8 12.9 156 143-309 31-187 (462)
149 PRK15462 dipeptide/tripeptide 99.4 1.2E-10 2.7E-15 98.0 21.7 118 186-308 312-437 (493)
150 PRK11273 glpT sn-glycerol-3-ph 99.4 6.7E-12 1.4E-16 106.7 14.4 149 165-325 48-198 (452)
151 PRK10207 dipeptide/tripeptide 99.4 1.3E-11 2.8E-16 105.2 15.9 152 155-320 23-179 (489)
152 TIGR00881 2A0104 phosphoglycer 99.4 3.5E-12 7.6E-17 106.0 11.5 149 161-324 10-160 (379)
153 PRK05122 major facilitator sup 99.4 1.2E-11 2.6E-16 103.6 14.7 160 150-316 19-179 (399)
154 PRK11195 lysophospholipid tran 99.4 9.5E-12 2.1E-16 103.7 13.7 132 163-312 20-151 (393)
155 TIGR00897 2A0118 polyol permea 99.4 1.6E-11 3.4E-16 102.9 15.0 145 158-313 25-170 (402)
156 PRK11646 multidrug resistance 99.4 1.6E-11 3.4E-16 102.6 14.9 150 160-325 24-175 (400)
157 PRK12382 putative transporter; 99.4 1.1E-11 2.5E-16 103.5 13.4 156 154-316 23-179 (392)
158 PRK09556 uhpT sugar phosphate 99.4 6E-12 1.3E-16 107.4 11.4 155 147-311 30-184 (467)
159 PRK11102 bicyclomycin/multidru 99.4 8E-12 1.7E-16 103.9 11.9 149 163-326 8-157 (377)
160 TIGR00712 glpT glycerol-3-phos 99.4 8.6E-12 1.9E-16 105.6 12.0 169 146-326 27-197 (438)
161 TIGR00806 rfc RFC reduced fola 99.4 3.2E-11 7E-16 98.9 14.6 153 146-317 28-181 (511)
162 TIGR00886 2A0108 nitrite extru 99.4 3.1E-11 6.6E-16 100.0 14.9 143 152-310 7-151 (366)
163 PRK11043 putative transporter; 99.4 3.6E-11 7.9E-16 100.8 15.4 149 163-326 23-172 (401)
164 COG2223 NarK Nitrate/nitrite t 99.4 6.2E-11 1.3E-15 94.6 15.3 153 147-313 15-167 (417)
165 TIGR00879 SP MFS transporter, 99.3 1.4E-11 3E-16 105.8 12.8 143 165-319 47-201 (481)
166 PRK09705 cynX putative cyanate 99.3 2.9E-11 6.2E-16 100.9 14.0 136 163-314 26-162 (393)
167 TIGR00890 2A0111 Oxalate/Forma 99.3 9.7E-12 2.1E-16 103.3 11.2 149 162-326 19-168 (377)
168 PRK15075 citrate-proton sympor 99.3 4.9E-11 1.1E-15 100.9 15.3 151 146-308 15-176 (434)
169 PRK09584 tppB putative tripept 99.3 7.1E-11 1.5E-15 101.2 15.7 157 151-321 26-187 (500)
170 TIGR00885 fucP L-fucose:H+ sym 99.3 8.5E-11 1.8E-15 98.3 15.2 143 155-309 12-154 (410)
171 KOG1330 Sugar transporter/spin 99.3 3.4E-12 7.3E-17 102.7 6.3 165 147-326 34-200 (493)
172 PRK10077 xylE D-xylose transpo 99.3 7.8E-11 1.7E-15 101.2 14.4 129 177-308 51-179 (479)
173 TIGR00894 2A0114euk Na(+)-depe 99.3 2.5E-11 5.5E-16 103.7 11.2 138 175-325 70-209 (465)
174 PRK10642 proline/glycine betai 99.3 1.1E-10 2.3E-15 100.3 14.9 164 147-322 17-200 (490)
175 PRK10406 alpha-ketoglutarate t 99.3 1.4E-10 3.1E-15 98.0 14.1 169 150-325 26-209 (432)
176 COG3104 PTR2 Dipeptide/tripept 99.3 3.8E-09 8.3E-14 86.6 20.8 297 2-306 79-451 (498)
177 KOG2816 Predicted transporter 99.2 2.6E-10 5.6E-15 95.2 13.8 271 1-312 79-393 (463)
178 TIGR00899 2A0120 sugar efflux 99.2 3E-10 6.6E-15 94.4 13.1 152 160-326 11-167 (375)
179 TIGR00887 2A0109 phosphate:H+ 99.2 4.9E-10 1.1E-14 96.6 14.8 122 179-309 54-175 (502)
180 KOG2615 Permease of the major 99.2 1.5E-10 3.3E-15 91.0 9.8 113 182-310 69-181 (451)
181 PRK11902 ampG muropeptide tran 99.2 5.6E-10 1.2E-14 93.6 13.8 159 154-326 7-173 (402)
182 TIGR00805 oat sodium-independe 99.2 1.9E-10 4.2E-15 100.9 11.2 161 149-311 36-234 (633)
183 PRK10133 L-fucose transporter; 99.2 6.1E-10 1.3E-14 94.0 13.9 145 153-309 33-177 (438)
184 TIGR00880 2_A_01_02 Multidrug 99.2 1.1E-10 2.3E-15 82.5 7.9 124 189-326 5-129 (141)
185 PF06609 TRI12: Fungal trichot 99.2 2.2E-10 4.8E-15 97.7 11.0 144 166-326 64-208 (599)
186 PTZ00207 hypothetical protein; 99.2 1E-09 2.2E-14 94.2 14.9 154 162-326 43-196 (591)
187 PRK09528 lacY galactoside perm 99.2 1.9E-09 4E-14 91.0 15.8 162 154-325 18-181 (420)
188 KOG2563 Permease of the major 99.2 3E-09 6.4E-14 85.9 15.6 270 2-313 97-423 (480)
189 PRK11010 ampG muropeptide tran 99.2 1.2E-09 2.5E-14 93.7 14.3 158 155-326 21-186 (491)
190 TIGR00896 CynX cyanate transpo 99.1 6.5E-10 1.4E-14 91.6 11.6 134 163-313 17-150 (355)
191 PF05977 MFS_3: Transmembrane 99.1 1.1E-09 2.4E-14 93.5 13.0 170 140-323 8-178 (524)
192 PRK09952 shikimate transporter 99.1 1.8E-09 3.8E-14 91.5 14.2 164 146-323 22-208 (438)
193 PF01770 Folate_carrier: Reduc 99.1 2.3E-09 5E-14 86.9 13.8 287 3-304 60-395 (412)
194 TIGR00898 2A0119 cation transp 99.1 3.7E-10 8E-15 97.7 9.7 127 168-309 111-240 (505)
195 PF03209 PUCC: PUCC protein; 99.1 1.5E-08 3.2E-13 81.5 17.6 164 133-312 199-364 (403)
196 PRK06814 acylglycerophosphoeth 99.1 2E-09 4.4E-14 102.1 14.8 122 186-318 56-177 (1140)
197 KOG3764 Vesicular amine transp 99.1 1.3E-10 2.9E-15 91.9 5.6 138 176-328 101-240 (464)
198 TIGR00901 2A0125 AmpG-related 99.1 9.7E-10 2.1E-14 90.6 11.2 136 164-313 6-147 (356)
199 KOG2532 Permease of the major 99.1 1.7E-09 3.8E-14 90.7 10.6 141 175-328 67-209 (466)
200 PF05631 DUF791: Protein of un 99.0 4.4E-09 9.4E-14 83.1 11.6 54 2-56 87-140 (354)
201 PRK15011 sugar efflux transpor 99.0 9.8E-09 2.1E-13 85.8 14.6 152 158-325 27-184 (393)
202 TIGR00902 2A0127 phenyl propri 99.0 1.4E-08 3E-13 84.6 15.3 153 153-321 11-165 (382)
203 TIGR00882 2A0105 oligosacchari 99.0 7.5E-09 1.6E-13 86.7 13.7 166 150-326 6-174 (396)
204 PRK08633 2-acyl-glycerophospho 99.0 6E-09 1.3E-13 99.1 14.0 130 170-311 34-165 (1146)
205 KOG2325 Predicted transporter/ 99.0 7.6E-09 1.6E-13 85.7 11.8 56 1-56 88-149 (488)
206 TIGR01301 GPH_sucrose GPH fami 99.0 2E-08 4.3E-13 84.5 13.6 146 160-308 18-175 (477)
207 PRK11128 putative 3-phenylprop 99.0 2.6E-08 5.5E-13 83.0 14.2 147 160-322 18-166 (382)
208 KOG0255 Synaptic vesicle trans 99.0 6E-09 1.3E-13 90.5 10.5 123 175-313 112-234 (521)
209 KOG0254 Predicted transporter 98.9 2.9E-08 6.3E-13 85.8 13.6 116 184-315 92-209 (513)
210 KOG2504 Monocarboxylate transp 98.9 1.5E-08 3.3E-13 86.2 10.7 167 145-326 45-212 (509)
211 KOG3762 Predicted transporter 98.9 9.5E-09 2.1E-13 84.8 8.6 153 161-328 386-540 (618)
212 PF03137 OATP: Organic Anion T 98.9 3.4E-10 7.3E-15 96.9 0.1 171 140-312 299-515 (539)
213 COG3104 PTR2 Dipeptide/tripept 98.8 4.3E-08 9.2E-13 80.6 11.3 147 160-319 35-190 (498)
214 PF06813 Nodulin-like: Nodulin 98.8 9.8E-08 2.1E-12 72.9 12.6 142 160-312 16-158 (250)
215 TIGR00883 2A0106 metabolite-pr 98.8 1.1E-07 2.3E-12 79.6 13.4 108 193-309 46-156 (394)
216 KOG0252 Inorganic phosphate tr 98.8 2E-08 4.4E-13 81.3 8.0 114 178-299 81-194 (538)
217 COG0738 FucP Fucose permease [ 98.8 3E-07 6.6E-12 73.6 14.5 137 162-310 29-165 (422)
218 TIGR00880 2_A_01_02 Multidrug 98.8 2.1E-08 4.6E-13 70.6 7.1 85 2-86 16-140 (141)
219 KOG3626 Organic anion transpor 98.8 1.7E-07 3.6E-12 81.3 13.3 86 139-225 385-474 (735)
220 TIGR02718 sider_RhtX_FptX side 98.8 1.6E-07 3.4E-12 78.6 12.2 167 149-326 4-175 (390)
221 KOG2533 Permease of the major 98.7 2E-07 4.3E-12 78.8 11.4 140 174-328 74-220 (495)
222 PF05631 DUF791: Protein of un 98.7 5.3E-07 1.2E-11 71.5 12.5 149 163-326 51-207 (354)
223 TIGR00792 gph sugar (Glycoside 98.7 3.1E-07 6.7E-12 78.1 11.4 139 163-310 16-161 (437)
224 KOG0569 Permease of the major 98.7 3.9E-07 8.5E-12 76.2 11.3 113 186-309 64-177 (485)
225 PF06963 FPN1: Ferroportin1 (F 98.6 1.1E-05 2.3E-10 67.2 19.2 134 166-304 278-411 (432)
226 PF01306 LacY_symp: LacY proto 98.6 6.2E-07 1.3E-11 73.5 11.5 161 147-321 8-174 (412)
227 TIGR00889 2A0110 nucleoside tr 98.6 2E-06 4.4E-11 72.5 13.4 70 160-230 16-87 (418)
228 PRK09669 putative symporter Ya 98.5 9.5E-07 2.1E-11 75.2 11.2 141 162-311 25-172 (444)
229 PF02487 CLN3: CLN3 protein; 98.5 1.3E-05 2.9E-10 65.5 15.1 53 4-56 79-131 (402)
230 PRK10429 melibiose:sodium symp 98.5 5.1E-06 1.1E-10 71.4 13.3 141 159-309 19-167 (473)
231 PF12832 MFS_1_like: MFS_1 lik 98.4 3E-06 6.5E-11 52.0 8.2 64 157-221 11-74 (77)
232 PF00083 Sugar_tr: Sugar (and 98.4 4.3E-09 9.2E-14 89.8 -6.4 114 183-308 48-161 (451)
233 PF03092 BT1: BT1 family; Int 98.4 2.2E-07 4.9E-12 78.2 3.8 131 178-313 252-382 (433)
234 KOG3098 Uncharacterized conser 98.4 8.1E-05 1.7E-09 62.1 18.3 301 1-308 67-411 (461)
235 PRK11462 putative transporter; 98.4 8.3E-06 1.8E-10 69.6 13.0 143 160-312 23-173 (460)
236 COG2807 CynX Cyanate permease 98.4 2E-05 4.3E-10 62.6 13.2 151 160-327 26-178 (395)
237 TIGR00788 fbt folate/biopterin 98.3 8.7E-06 1.9E-10 69.6 12.1 164 146-326 26-200 (468)
238 KOG2816 Predicted transporter 98.3 2.5E-05 5.4E-10 65.9 14.2 120 191-327 71-191 (463)
239 KOG0253 Synaptic vesicle trans 98.3 1.2E-05 2.6E-10 64.0 10.8 141 165-322 97-237 (528)
240 KOG2325 Predicted transporter/ 98.3 2.8E-06 6.2E-11 70.8 7.8 126 171-307 59-187 (488)
241 PF13347 MFS_2: MFS/sugar tran 98.2 8.7E-06 1.9E-10 69.0 8.0 143 164-313 19-168 (428)
242 PF05978 UNC-93: Ion channel r 98.2 0.00016 3.5E-09 51.2 12.9 136 158-309 8-149 (156)
243 KOG4332 Predicted sugar transp 98.1 1.4E-05 3.1E-10 60.7 8.0 54 2-56 90-143 (454)
244 PRK09848 glucuronide transport 98.1 0.00012 2.6E-09 62.6 13.4 64 161-225 23-92 (448)
245 PF03825 Nuc_H_symport: Nucleo 98.1 0.00011 2.3E-09 61.4 12.4 128 160-304 16-144 (400)
246 KOG3810 Micronutrient transpor 98.0 4.2E-05 9E-10 60.3 7.9 277 6-304 64-381 (433)
247 PF03209 PUCC: PUCC protein; 98.0 0.00013 2.7E-09 59.4 10.6 139 172-313 6-153 (403)
248 TIGR00926 2A1704 Peptide:H+ sy 97.9 0.00041 8.8E-09 61.5 14.2 133 173-312 15-151 (654)
249 COG2211 MelB Na+/melibiose sym 97.9 0.0003 6.5E-09 58.9 12.2 153 152-313 18-177 (467)
250 KOG2563 Permease of the major 97.7 0.00032 6.9E-09 57.7 9.6 125 179-312 77-203 (480)
251 PF11700 ATG22: Vacuole efflux 97.6 0.0012 2.6E-08 56.5 12.2 112 186-309 74-212 (477)
252 PF06779 DUF1228: Protein of u 97.6 0.0011 2.4E-08 41.2 8.0 69 163-232 9-77 (85)
253 TIGR00926 2A1704 Peptide:H+ sy 97.5 0.02 4.3E-07 51.2 18.3 55 2-56 41-104 (654)
254 KOG0637 Sucrose transporter an 97.2 0.00076 1.6E-08 55.6 5.1 159 145-306 32-200 (498)
255 PF03092 BT1: BT1 family; Int 97.2 0.0023 5E-08 54.3 8.2 142 170-324 14-164 (433)
256 COG0477 ProP Permeases of the 97.2 0.0085 1.8E-07 48.1 11.4 135 164-311 20-158 (338)
257 TIGR00769 AAA ADP/ATP carrier 97.1 0.021 4.5E-07 48.7 13.3 127 181-309 43-189 (472)
258 KOG3574 Acetyl-CoA transporter 97.1 0.012 2.6E-07 47.7 10.9 43 271-313 391-433 (510)
259 PF06813 Nodulin-like: Nodulin 97.0 0.0053 1.2E-07 47.4 7.9 56 1-56 53-115 (250)
260 TIGR00939 2a57 Equilibrative N 96.9 0.073 1.6E-06 45.2 14.6 57 248-305 372-428 (437)
261 PF07672 MFS_Mycoplasma: Mycop 96.6 0.11 2.4E-06 40.0 12.2 24 61-84 38-61 (267)
262 KOG4686 Predicted sugar transp 96.4 0.00046 9.9E-09 53.3 -1.2 128 174-313 72-200 (459)
263 PF03137 OATP: Organic Anion T 96.4 0.00085 1.8E-08 58.3 0.2 149 160-309 17-201 (539)
264 KOG0637 Sucrose transporter an 96.4 0.089 1.9E-06 44.0 11.3 127 186-313 336-472 (498)
265 PF01770 Folate_carrier: Reduc 96.4 0.21 4.5E-06 41.7 13.5 149 146-312 6-156 (412)
266 KOG3762 Predicted transporter 96.3 0.0054 1.2E-07 51.9 3.9 68 160-228 25-92 (618)
267 COG2270 Permeases of the major 96.1 0.031 6.6E-07 46.2 7.5 107 186-304 62-170 (438)
268 PF01733 Nucleoside_tran: Nucl 96.1 0.0011 2.4E-08 53.4 -0.6 116 187-304 187-303 (309)
269 COG0477 ProP Permeases of the 95.9 0.0089 1.9E-07 48.0 3.9 55 2-56 57-113 (338)
270 KOG3098 Uncharacterized conser 95.8 0.33 7.1E-06 41.3 12.1 110 183-307 51-160 (461)
271 PF06963 FPN1: Ferroportin1 (F 95.7 1.1 2.4E-05 38.1 16.9 168 159-327 15-192 (432)
272 KOG2881 Predicted membrane pro 95.6 0.72 1.6E-05 35.3 14.6 35 192-226 250-284 (294)
273 KOG4332 Predicted sugar transp 95.6 0.012 2.6E-07 45.3 2.9 63 163-226 54-116 (454)
274 TIGR01272 gluP glucose/galacto 95.2 0.042 9.2E-07 44.5 5.3 54 2-56 196-249 (310)
275 KOG3626 Organic anion transpor 94.9 0.31 6.6E-06 43.8 9.8 161 147-309 98-297 (735)
276 PF13000 Acatn: Acetyl-coenzym 94.9 0.13 2.8E-06 43.7 7.2 42 271-312 427-468 (544)
277 KOG1237 H+/oligopeptide sympor 94.8 1.4 3.1E-05 39.0 13.5 36 276-311 485-520 (571)
278 PRK03612 spermidine synthase; 94.5 1.7 3.7E-05 38.2 13.2 43 283-325 143-187 (521)
279 KOG1479 Nucleoside transporter 94.0 3.1 6.8E-05 34.8 13.3 59 247-307 342-400 (406)
280 PF00854 PTR2: POT family; In 93.8 0.21 4.6E-06 41.7 6.4 109 213-326 2-114 (372)
281 PF05978 UNC-93: Ion channel r 93.5 0.14 2.9E-06 36.5 4.0 54 2-56 55-108 (156)
282 PF12832 MFS_1_like: MFS_1 lik 93.4 0.043 9.3E-07 33.7 1.3 23 2-24 53-75 (77)
283 KOG1237 H+/oligopeptide sympor 93.4 5.4 0.00012 35.5 16.9 146 167-314 59-223 (571)
284 TIGR00769 AAA ADP/ATP carrier 93.4 4.9 0.00011 34.8 17.6 33 2-34 62-94 (472)
285 PF00854 PTR2: POT family; In 93.1 0.37 8.1E-06 40.2 6.8 69 15-83 2-121 (372)
286 PF03219 TLC: TLC ATP/ADP tran 93.0 3.2 6.8E-05 36.1 12.1 117 194-310 71-205 (491)
287 KOG3880 Predicted small molecu 90.6 1.1 2.4E-05 35.8 6.2 51 6-56 84-134 (409)
288 COG3202 ATP/ADP translocase [E 90.0 6.4 0.00014 33.9 10.5 126 186-311 65-210 (509)
289 KOG1479 Nucleoside transporter 88.8 13 0.00029 31.3 15.2 57 147-205 19-75 (406)
290 KOG3574 Acetyl-CoA transporter 85.3 8.4 0.00018 32.2 8.2 63 151-217 36-103 (510)
291 PF03219 TLC: TLC ATP/ADP tran 82.6 33 0.00071 30.1 12.6 41 187-227 324-364 (491)
292 PF06779 DUF1228: Protein of u 80.5 2.5 5.4E-05 26.5 3.0 38 3-40 46-83 (85)
293 COG5336 Uncharacterized protei 77.1 10 0.00022 24.8 4.9 35 279-313 36-70 (116)
294 PF02990 EMP70: Endomembrane p 67.9 90 0.0019 27.8 15.0 22 136-158 252-273 (521)
295 PF11947 DUF3464: Protein of u 63.9 19 0.00042 25.5 4.5 29 271-299 116-144 (153)
296 PF02487 CLN3: CLN3 protein; 62.2 1E+02 0.0022 26.4 9.5 107 187-313 64-170 (402)
297 COG5336 Uncharacterized protei 60.7 46 0.00099 21.9 6.2 31 193-223 53-84 (116)
298 KOG4830 Predicted sugar transp 57.9 16 0.00035 28.7 3.6 51 163-214 34-93 (412)
299 PF02694 UPF0060: Uncharacteri 57.7 36 0.00077 22.4 4.5 48 181-229 54-101 (107)
300 KOG1307 K+-dependent Ca2+/Na+ 56.4 29 0.00062 29.7 4.9 52 163-217 441-492 (588)
301 KOG1278 Endosomal membrane pro 54.3 98 0.0021 27.4 7.7 31 178-209 356-386 (628)
302 PRK02237 hypothetical protein; 52.8 63 0.0014 21.4 5.0 47 182-229 57-103 (109)
303 COG1288 Predicted membrane pro 52.3 1.5E+02 0.0033 25.5 8.3 21 57-77 212-232 (481)
304 KOG2601 Iron transporter [Inor 51.1 21 0.00045 29.9 3.3 32 272-303 409-440 (503)
305 KOG3097 Predicted membrane pro 48.4 1.6E+02 0.0035 24.5 13.5 53 3-56 77-129 (390)
306 TIGR00939 2a57 Equilibrative N 46.9 1.9E+02 0.0042 25.1 10.2 22 190-211 53-74 (437)
307 KOG3097 Predicted membrane pro 44.9 1.8E+02 0.004 24.2 10.4 31 192-222 68-98 (390)
308 COG3202 ATP/ADP translocase [E 43.2 2.4E+02 0.0051 25.0 14.5 42 189-230 328-370 (509)
309 PRK10697 DNA-binding transcrip 42.6 78 0.0017 21.4 4.5 12 79-90 58-69 (118)
310 PF13000 Acatn: Acetyl-coenzym 42.3 1.3E+02 0.0028 26.7 6.7 75 155-230 9-89 (544)
311 PF10183 ESSS: ESSS subunit of 36.0 50 0.0011 21.8 2.9 30 59-88 55-85 (105)
312 COG1268 BioY Uncharacterized c 34.4 2E+02 0.0042 21.5 6.6 23 190-212 90-112 (184)
313 KOG2601 Iron transporter [Inor 33.9 3E+02 0.0066 23.6 12.0 38 186-223 67-104 (503)
314 PF13493 DUF4118: Domain of un 33.6 86 0.0019 20.3 3.8 24 189-212 82-105 (105)
315 PF01405 PsbT: Photosystem II 33.6 61 0.0013 15.4 3.0 11 79-89 18-28 (29)
316 KOG4255 Uncharacterized conser 33.4 77 0.0017 26.1 3.9 18 186-203 306-323 (439)
317 COG1422 Predicted membrane pro 31.8 2.3E+02 0.0049 21.4 10.3 44 41-84 21-68 (201)
318 PRK10692 hypothetical protein; 30.6 1.3E+02 0.0028 18.9 3.7 20 13-32 3-22 (92)
319 COG2076 EmrE Membrane transpor 30.1 1.7E+02 0.0037 19.4 5.4 50 6-55 22-72 (106)
320 PF08080 zf-RNPHF: RNPHF zinc 29.8 17 0.00038 18.0 0.0 6 8-13 3-8 (36)
321 PRK13712 conjugal transfer pro 28.6 49 0.0011 20.8 1.7 79 5-83 22-108 (115)
322 PF04341 DUF485: Protein of un 27.8 1.7E+02 0.0036 18.7 6.9 30 146-175 16-45 (91)
323 PRK11875 psbT photosystem II r 27.3 86 0.0019 15.2 2.8 10 80-89 19-28 (31)
324 TIGR01667 YCCS_YHJK integral m 26.6 4.5E+02 0.0097 24.7 8.1 53 4-56 43-100 (701)
325 CHL00031 psbT photosystem II p 25.0 1E+02 0.0022 15.2 2.6 10 80-89 19-28 (33)
326 PF11196 DUF2834: Protein of u 24.6 1.6E+02 0.0035 19.1 3.7 30 10-44 65-94 (97)
327 KOG0055 Multidrug/pheromone ex 24.1 7.7E+02 0.017 25.1 9.2 24 57-80 802-825 (1228)
328 PF12273 RCR: Chitin synthesis 23.7 44 0.00095 23.0 1.1 16 64-79 1-16 (130)
329 PRK11588 hypothetical protein; 23.5 5.4E+02 0.012 23.0 14.1 31 5-35 137-169 (506)
330 PF11947 DUF3464: Protein of u 23.4 85 0.0018 22.4 2.4 15 197-211 111-125 (153)
331 PF15061 DUF4538: Domain of un 22.8 86 0.0019 18.0 1.9 21 61-81 3-23 (58)
332 PF10762 DUF2583: Protein of u 22.5 1.8E+02 0.0038 18.3 3.2 20 13-32 3-22 (89)
333 COG1742 Uncharacterized conser 21.9 1.2E+02 0.0025 20.0 2.5 44 181-225 55-98 (109)
334 PRK10263 DNA translocase FtsK; 21.9 7.3E+02 0.016 25.5 8.6 21 190-210 60-80 (1355)
335 KOG4112 Signal peptidase subun 20.9 2.3E+02 0.005 18.2 3.6 28 298-325 35-62 (101)
336 PRK13595 ubiA prenyltransferas 20.9 4.7E+02 0.01 21.3 6.3 69 7-76 205-277 (292)
337 TIGR02230 ATPase_gene1 F0F1-AT 20.8 2.6E+02 0.0056 18.4 6.4 10 204-213 65-74 (100)
338 PF13334 DUF4094: Domain of un 20.3 1.4E+02 0.003 19.3 2.7 13 14-26 3-15 (95)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-42 Score=279.05 Aligned_cols=322 Identities=25% Similarity=0.423 Sum_probs=275.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
++.|.++||+|||..+.++.++..++.++..++ +++++++++|++.|+..|....
T Consensus 78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~ 157 (485)
T KOG0569|consen 78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLL 157 (485)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHH
Confidence 568999999999999999999998888887765 7889999999999999998766
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhc-cCCcHHHHHHHHHHHhcccchhH
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQ-RSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
+.+...|++.+.+..+++++..+...++||||||+.. +++ ++||+++++.++++++.++
T Consensus 158 ~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~-~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 158 QIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGD-EEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCC-HHHHHHHHHHHhCCCcchh
Confidence 5566789999999999999999999999999999988 677 9999999999999886555
Q ss_pred HHHHHHHhcc---ccccCccchHHhcc-cccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHH
Q 043907 117 ELNDLIRASS---TSKSITQPFKNIIQ-RKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAG 192 (330)
Q Consensus 117 ~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 192 (330)
+.++..++.+ .+++++.+++++++ +..+++..+.+.+....++.+.+....|...++++.|++.+++. +.+...+
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g 315 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIG 315 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 5544333222 22335677889887 46777888888999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccc
Q 043907 193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWL 272 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (330)
....+.++++.++.||.|||++++.+..++.+..+.+.......... .++..+..+.+.+.+...++.|.+|+++.
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 99999999999999999999999999999998888877664432111 01333456778888899999999999999
Q ss_pred ccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHhhc
Q 043907 273 VPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTS 329 (330)
Q Consensus 273 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 329 (330)
+.+|++|++.|+++.++....+++..++....++.+.+..|...|++|.+.+.+..+
T Consensus 392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888888887776653
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=2e-35 Score=252.36 Aligned_cols=323 Identities=34% Similarity=0.601 Sum_probs=266.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++|++|||+.++++.+.+.++++++++++|+.++.++|+++|+|.|....
T Consensus 107 l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~ 186 (513)
T KOG0254|consen 107 LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLF 186 (513)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998776
Q ss_pred -------------ccCc--cchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhc--ccchhHHHH
Q 043907 57 -------------IKGG--WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRG--ISDVKAELN 119 (330)
Q Consensus 57 -------------~~~~--~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 119 (330)
..++ ++||..+.+..+++++..+..+++||||+|+.++++ .+++++.++++++ +++.+.+.+
T Consensus 187 ~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~~~~~~~~ 265 (513)
T KOG0254|consen 187 ITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPEDVEVELE 265 (513)
T ss_pred HHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCcchHHHHH
Confidence 1221 489999999999999888888889999999999999 9999999999998 345555555
Q ss_pred HHHHhccc--c-ccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHH
Q 043907 120 DLIRASST--S-KSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGT 196 (330)
Q Consensus 120 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 196 (330)
+.+..... + .+.+..+++++++..+++..+.+.+..++++++.+...+|.+.+++..|.+.+. . ......++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~-~~~~~~~~v~~ 343 (513)
T KOG0254|consen 266 LLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-F-LASIILGVVNF 343 (513)
T ss_pred HHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-H-HHHHHHHHHHH
Confidence 44422111 1 111224677777677888888999999999999999999999999999888665 4 67788888999
Q ss_pred HHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907 197 VLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE 276 (330)
Q Consensus 197 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 276 (330)
++..+...+.||+|||+.++.+...+.++.++++........... ......+..+...+++...++.+++|++|.+.+|
T Consensus 344 ~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sE 422 (513)
T KOG0254|consen 344 LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSE 422 (513)
T ss_pred HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhhc
Confidence 999999999999999999999999999999988876544322110 1234566777788888888999999999999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHhh
Q 043907 277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMT 328 (330)
Q Consensus 277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 328 (330)
.+|.+.|+++.++....++..+++.......+.+..+ ...|..+++++.+..
T Consensus 423 ifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~ 475 (513)
T KOG0254|consen 423 IFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSL 475 (513)
T ss_pred cCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999888888887776 666666666665543
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=9.7e-36 Score=254.42 Aligned_cols=316 Identities=18% Similarity=0.247 Sum_probs=213.1
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhcccccccc-------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFN------IYMLIFGRLLLGVGIGFGNQ------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~------------------- 56 (330)
+++|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|...+
T Consensus 74 ~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~ 153 (502)
T TIGR00887 74 LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMM 153 (502)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHH
Confidence 57899999999999999999999999999888765 78999999999999998766
Q ss_pred --------------------c----c-------------------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhc
Q 043907 57 --------------------I----K-------------------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQ 93 (330)
Q Consensus 57 --------------------~----~-------------------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~ 93 (330)
+ . ..++||+++.+.++++++..+..+++||||+|+..
T Consensus 154 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~ 233 (502)
T TIGR00887 154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTAD 233 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1 0 02479999999999888888888889999999998
Q ss_pred cCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccch---hHHHHHHHHHHHHhhhhHhHHHhHH
Q 043907 94 RSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRP---QPVMAILIPFFQQVTGINIVGLYSP 170 (330)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (330)
++|+++++++.+++..+.+..++ .++.++.++++++.+.+++++++++..+ +..+......+.....++....+.|
T Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p 312 (502)
T TIGR00887 234 VAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQK 312 (502)
T ss_pred hCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccH
Confidence 88734556666666543321111 1111111111111223577776532211 2223223333333334456667789
Q ss_pred HHHHhcCCCCchhh-----------HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 171 VLFRTLKLGESTSL-----------LLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 171 ~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
.++++.|++..... ........++.+++.++.++++||+|||+.++.+..+.+++...+......
T Consensus 313 ~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~---- 388 (502)
T TIGR00887 313 VILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH---- 388 (502)
T ss_pred HHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh----
Confidence 98888888654321 012334455667788999999999999999888887777776665543210
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-------
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF------- 312 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------- 312 (330)
...... ..........++.+..+..+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.+..
T Consensus 389 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (502)
T TIGR00887 389 ----LSTHGF--LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP 462 (502)
T ss_pred ----cchhHH--HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence 001111 1111222222344555677778899999999999999999999999999999999998742
Q ss_pred ---c-chhHHHHHHHHHHhh
Q 043907 313 ---K-AGIFFFFGGLVLIMT 328 (330)
Q Consensus 313 ---g-~~~~~~~~~~~~~~~ 328 (330)
+ ...+++++++++++.
T Consensus 463 ~~~~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 463 TGIWMGHVLEIFALFMFLGI 482 (502)
T ss_pred ccccchHHHHHHHHHHHHHH
Confidence 3 346777777766543
No 4
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=1.5e-34 Score=250.88 Aligned_cols=309 Identities=17% Similarity=0.186 Sum_probs=223.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||++++++.++.++++++++++++++.++++|+++|++.|+..+
T Consensus 220 li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~ 299 (742)
T TIGR01299 220 FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF 299 (742)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998766
Q ss_pred --------------cc-------------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHh
Q 043907 57 --------------IK-------------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIR 109 (330)
Q Consensus 57 --------------~~-------------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~ 109 (330)
+. ...+||+.+++.++++++.++..+++||||+|+..+++ .+++.+.+++++
T Consensus 300 ~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i~ 378 (742)
T TIGR01299 300 WMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLIH 378 (742)
T ss_pred HHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHHh
Confidence 10 12369999999888888887778889999999999999 999999999987
Q ss_pred cccch-----hHH--HHHHHHhccc------cccC------------------ccchHHhcccccchhHHHHHHHHHHHH
Q 043907 110 GISDV-----KAE--LNDLIRASST------SKSI------------------TQPFKNIIQRKYRPQPVMAILIPFFQQ 158 (330)
Q Consensus 110 ~~~~~-----~~~--~~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (330)
+.+.. ... .++.+...+. +++. ..+++++++++.+++.++...+ ++..
T Consensus 379 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~ 457 (742)
T TIGR01299 379 DTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTL 457 (742)
T ss_pred cCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHH
Confidence 65521 110 0011100000 0000 0135667766666666655555 4555
Q ss_pred hhhhHhHHHhHHHHHHhc------------------------------------------CC-----C------------
Q 043907 159 VTGINIVGLYSPVLFRTL------------------------------------------KL-----G------------ 179 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~------------------------------------------g~-----~------------ 179 (330)
..+++.+..|+|.++++. |+ +
T Consensus 458 ~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (742)
T TIGR01299 458 SFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD 537 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence 678899999999875331 00 0
Q ss_pred ----C-----------------------------------------------c-----hhhHHHHHHHHHHHHHHHHHHH
Q 043907 180 ----E-----------------------------------------------S-----TSLLLSAVVAGGMGTVLAIISM 203 (330)
Q Consensus 180 ----~-----------------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~g 203 (330)
. + ... ....+..++.+++.++.+
T Consensus 538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~l~~l~~i~G~il~g 616 (742)
T TIGR01299 538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIY-FVNFLGTLAVLPGNIVSA 616 (742)
T ss_pred eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0 0 012 345667789999999999
Q ss_pred HHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhh
Q 043907 204 ILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIR 283 (330)
Q Consensus 204 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 283 (330)
+++||+|||+++..+.++.+++.+++.+. .+....++..++.+.+.+. ..+....+++|.+|++.|
T Consensus 617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-------------~s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~R 682 (742)
T TIGR01299 617 LLMDKIGRLRMLAGSMVLSCISCFFLSFG-------------NSESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKR 682 (742)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHH
Confidence 99999999999998888888887776654 2222233333333333332 334566788999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907 284 SAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 327 (330)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (330)
++++|+.++..++|++++|.+.+.+.+.....++++++++.+++
T Consensus 683 gta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 683 ATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999887754455666666555544
No 5
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=7e-40 Score=277.49 Aligned_cols=321 Identities=29% Similarity=0.588 Sum_probs=250.0
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhhcccccccc---------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF---NIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
+++.|.++||+|||+.+.++.++..+++++.++++ |++.+.++|+++|++.|...+
T Consensus 63 ~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~ 142 (451)
T PF00083_consen 63 ALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSL 142 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999999999999999999999999999 999999999999999998776
Q ss_pred ------------------c---cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907 57 ------------------I---KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK 115 (330)
Q Consensus 57 ------------------~---~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (330)
. .+..+||+.+.+..+++++..+...++||||+|+..++| .|||++.++++++++..+
T Consensus 143 ~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 143 FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR-DEEAEKVLRKLRGKEIED 221 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc-cccccccccccccccccc
Confidence 1 112459999999999988877778889999999999999 889999999977766555
Q ss_pred HHHHHHHHhccccccCccchHHhccccc-chhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHH
Q 043907 116 AELNDLIRASSTSKSITQPFKNIIQRKY-RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGM 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 194 (330)
++.++..++.++.++.+.+++++++++. +++....+.+..+....+......|.+.++++.+.+.. . .......+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~ 298 (451)
T PF00083_consen 222 EEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--F-LATLILGLV 298 (451)
T ss_pred ccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--c-ccccccccc
Confidence 5554444444444333466777776543 56667767777777777777788888888888887776 2 445566677
Q ss_pred HHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccc
Q 043907 195 GTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVP 274 (330)
Q Consensus 195 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (330)
..++.++...+.||+|||+.++.+...+.++.+.+...... ..+ .++......+.+.......++.++++..+.++
T Consensus 299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL--GVS--SSSWWSILSIVFLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccc--ccc--cccccccccceeeeeccccccccccccccccc
Confidence 88888888899999999999999988888777766511000 000 00112333444455555667778888888999
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHhhc
Q 043907 275 SEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMTS 329 (330)
Q Consensus 275 ~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 329 (330)
+|.+|++.|+++.++....+++++++.+.+.+.+.+..+ +..+.++++++++..+
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i 430 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAII 430 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHh
Confidence 999999999999999999999999999999999988887 7778887777666543
No 6
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=1.9e-32 Score=234.01 Aligned_cols=311 Identities=25% Similarity=0.487 Sum_probs=215.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHhhcccccccc-------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA------------FNIYMLIFGRLLLGVGIGFGNQ------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~------------- 56 (330)
+++|+++||+|||+++..+..+..++.+.++++ +++..++++|+++|++.|...+
T Consensus 73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (479)
T PRK10077 73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH 152 (479)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence 678999999999999999999999998887763 2356788999999999998777
Q ss_pred --------------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHH
Q 043907 57 --------------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQ 102 (330)
Q Consensus 57 --------------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~ 102 (330)
+ .+.++||+.|++.+++.++..+..+++||+|+|+..+++ .++++
T Consensus 153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~ 231 (479)
T PRK10077 153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAE 231 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHH
Confidence 0 134689999999888777776667789999999887777 77777
Q ss_pred HHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch
Q 043907 103 KMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST 182 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 182 (330)
+..++..+.++.+.+.++..+..+++++ ..+..+. ..............+.+..+.+...++.|.+.++.|.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~ 307 (479)
T PRK10077 232 GILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDI 307 (479)
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCch
Confidence 7666655443322222222211111010 0011111 11111222223334444455566677889998888988777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccc
Q 043907 183 SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGY 262 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (330)
.. ......++...++.++.++++||+|||+.++.+..++.++.+.+..... ............+.+..++
T Consensus 308 ~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~ 377 (479)
T PRK10077 308 AL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAF 377 (479)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh---------cCcccHHHHHHHHHHHHHH
Confidence 76 6777788899999999999999999999999998888887777654321 0111222333344444445
Q ss_pred ccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH------hhcc-chhHHHHHHHHHHh
Q 043907 263 CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML------CHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 263 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g-~~~~~~~~~~~~~~ 327 (330)
+..+.|..+.+++|.+|+++|+++.|+.+...++++++++.+.+.+. +..+ ...|++++++++++
T Consensus 378 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 378 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred hccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 54556677788899999999999999999999999999988876554 3455 45666666555443
No 7
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1e-32 Score=211.40 Aligned_cols=308 Identities=16% Similarity=0.198 Sum_probs=220.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
-.+|.++|++|||+.+.+......+...+.+.++|+..+++.|.+.|+|.|+ .|
T Consensus 131 ~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~~~w 209 (528)
T KOG0253|consen 131 MVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMSFFW 209 (528)
T ss_pred hhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHHHHH
Confidence 4689999999999999999999999999999999999999999999999999 55
Q ss_pred -------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccch---------
Q 043907 57 -------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDV--------- 114 (330)
Q Consensus 57 -------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 114 (330)
.....||||.......+..+.+...+++|||||++..+++ .++|.+.++++...|..
T Consensus 210 aig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlplgvl~~ 288 (528)
T KOG0253|consen 210 AIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPLGVLES 288 (528)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCcceeee
Confidence 4455799998888888888888888889999999999999 99999988887665511
Q ss_pred --hHHHHHHH----H-hccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcC----------
Q 043907 115 --KAELNDLI----R-ASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLK---------- 177 (330)
Q Consensus 115 --~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------- 177 (330)
.++.++.. + +.+..++.+.+..+++.++.++..+......+... ..++........+++.-.
T Consensus 289 s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgna-fsyyg~VLlttelfqsgd~c~~~~r~~p 367 (528)
T KOG0253|consen 289 SAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNA-FSYYGSVLLTTELFQSGDACPLYNRFLP 367 (528)
T ss_pred ehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCccccchhcch
Confidence 11111111 1 11122334556778887777777666555544433 334444444444433211
Q ss_pred ----------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch
Q 043907 178 ----------LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY 247 (330)
Q Consensus 178 ----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.+..... .-.....+....|.++.++++||+|||+.+....++++++.+.+.... ..+
T Consensus 368 ~e~e~~~~c~~s~~~dY-rdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------~rn 435 (528)
T KOG0253|consen 368 TELETRANCPLSVAKDY-RDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------TRN 435 (528)
T ss_pred hHHHhhhcCCccchhHH-HHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------Ccc
Confidence 1112222 456777889999999999999999999999999999998888877652 122
Q ss_pred hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907 248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 327 (330)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (330)
. .....+....+.+.++. ..++|..|++|+..|+++.|.+..++++|+++.|.+. ...+..-..+..+++++++++
T Consensus 436 ~--~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ila 511 (528)
T KOG0253|consen 436 A--YTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILA 511 (528)
T ss_pred h--hHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHH
Confidence 2 22222333333344444 6689999999999999999999999999999999988 333332245555555555544
Q ss_pred h
Q 043907 328 T 328 (330)
Q Consensus 328 ~ 328 (330)
.
T Consensus 512 g 512 (528)
T KOG0253|consen 512 G 512 (528)
T ss_pred H
Confidence 3
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=9.2e-32 Score=231.04 Aligned_cols=305 Identities=19% Similarity=0.275 Sum_probs=207.1
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.+...+
T Consensus 144 ~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~ 223 (505)
T TIGR00898 144 SFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV 223 (505)
T ss_pred HHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999998665
Q ss_pred -----------cc-CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh--HHHHHHH
Q 043907 57 -----------IK-GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK--AELNDLI 122 (330)
Q Consensus 57 -----------~~-~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 122 (330)
+. -..+||+.+++.+++.++..+..+++||+|+|+..+++ .+++.+.+++..+.+..+ .+..+..
T Consensus 224 ~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (505)
T TIGR00898 224 FFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLS 302 (505)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhh
Confidence 00 01249999999988888777777889999999999999 888888877765544211 1111111
Q ss_pred -HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 123 -RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
++.+++++++.+++++++++..+...+......+.....++. .+...+..+.+. . ......++..+++.++
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~-~~~~~~~~~~i~~~~~ 374 (505)
T TIGR00898 303 LEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG----LVLDLGNLGGNI---Y-LDLFISGLVELPAKLI 374 (505)
T ss_pred hhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH----HhccccccCCCh---H-HHHHHHHHHHHHHHHH
Confidence 111111112346778877655554444443333322222222 222223333332 2 3455667888899999
Q ss_pred HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907 202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE 281 (330)
Q Consensus 202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 281 (330)
.+++.||+|||+.+..+..+.+++.+.+... +....+.......+...+....+ +..+.+.+|.+|++
T Consensus 375 ~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 375 TLLLIDRLGRRYTMAASLLLAGVALLLLLFV-----------PVDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----------CCCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHH
Confidence 9999999999999998888877776665543 11212222222233222322222 35567778999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907 282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 327 (330)
Q Consensus 282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (330)
.|+++.|+.++...+++.++|.+.+ +.+......+++++++.+++
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999998 44433355666666555444
No 9
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=1.8e-31 Score=227.40 Aligned_cols=276 Identities=17% Similarity=0.175 Sum_probs=185.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYM--------LIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~----------------- 56 (330)
++.|+++||+|||+++.++.++++++++++++++|+.+ +++.|+++|++.|+..+
T Consensus 75 ~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~ 154 (490)
T PRK10642 75 LFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF 154 (490)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence 57899999999999999999999999999999999875 89999999999998776
Q ss_pred ----------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907 57 ----------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ 106 (330)
Q Consensus 57 ----------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~ 106 (330)
+ .+.+|||++|++.++++++..+....+||+|+|...+++ .++..
T Consensus 155 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~---- 229 (490)
T PRK10642 155 MGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK-LEQGD---- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh-hhhhc----
Confidence 1 125799999999887666655556679999986532222 11100
Q ss_pred HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhH
Q 043907 107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLL 185 (330)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 185 (330)
++ ..+++++.++++++++ .++....... ..+.....++....|.|.+++ ..|++..+..
T Consensus 230 ---------------~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~- 289 (490)
T PRK10642 230 ---------------RE--GLQDGPKVSFKEIATK-HWRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGV- 289 (490)
T ss_pred ---------------cc--cccccccCCHHHHHHH-hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence 00 0001123356666643 2233332222 223333556677788998885 5688877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
.......++..++.++.|+++||+|||+.+..+.....+......... ...+.........+.+.+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999999988777654443332221111 0111222222222222222223
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
.+ ....+..|.+|++.|+++.|+.+.....++.++|.+.+.+.+..+
T Consensus 360 ~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~ 406 (490)
T PRK10642 360 TG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ 406 (490)
T ss_pred HH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33 234455799999999999998777788888999999999887655
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=2.4e-30 Score=221.56 Aligned_cols=321 Identities=32% Similarity=0.633 Sum_probs=221.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
+++|+++||+|||+++..+.++..++.+++.+. .+++.+++.|+++|++.+...+
T Consensus 89 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 168 (481)
T TIGR00879 89 LFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY 168 (481)
T ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHH
Confidence 578999999999999999999999999998654 3456899999999999988766
Q ss_pred -------------cc-------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907 57 -------------IK-------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 -------------~~-------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
+. +..+||+.|++.++..++..+..+++||+|+++..+++ .+++++..++..+.++.+.
T Consensus 169 ~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 169 QLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCcH
Confidence 23 45689999999777777666667789999988766666 5555555444433221111
Q ss_pred HHHH----HHHhcc-ccccCccchHHhcccc--cchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHH
Q 043907 117 ELND----LIRASS-TSKSITQPFKNIIQRK--YRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAV 189 (330)
Q Consensus 117 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 189 (330)
+..+ .+...+ +.+..+..+++.++.. ..++.++...+..+...........+.|.+.++.|++..+.. ....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 326 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHH
Confidence 1110 000000 0111112233443211 234555555555555555556677888988888999987777 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccc
Q 043907 190 VAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPL 269 (330)
Q Consensus 190 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (330)
...+..+++.++.+++.||++||+.+..+..+..++.+.+....... .. ..++............+..+++.+..+.
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF--VT-GSSKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcc--cC-CcccchhHHHHHHHHHHHHHHHccccCe
Confidence 88999999999999999999999998888777777666655321110 00 0000112333333444444555566677
Q ss_pred cccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
...++.|.+|++.|+++.|+.+...++++++++.+.+.+.++.++ ..|++.+++++++
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 462 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG 462 (481)
T ss_pred ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence 777778999999999999999999999999999999999998774 5566666665543
No 11
>PRK09952 shikimate transporter; Provisional
Probab=99.97 E-value=3.4e-29 Score=210.45 Aligned_cols=268 Identities=16% Similarity=0.203 Sum_probs=174.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~----------------- 56 (330)
++.|+++||+|||+++..+.++++++++++++++|+. .+++.|+++|++.|...+
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 4579999999999999999999999999999999987 588999999999998765
Q ss_pred ----------------------cc--------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907 57 ----------------------IK--------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ 106 (330)
Q Consensus 57 ----------------------~~--------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~ 106 (330)
+. ..+|||++|++.+++.++........||+|+|..++++ .+
T Consensus 162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-~~------- 233 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-QA------- 233 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-cc-------
Confidence 11 24799999999887766655555568888865322111 00
Q ss_pred HHhcccchhHHHHHHHHhccccccCccchHH-hcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhh
Q 043907 107 RIRGISDVKAELNDLIRASSTSKSITQPFKN-IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSL 184 (330)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 184 (330)
+++++.+..+ +++++ +.+.......+......+....+.|.+.+ +.|+++....
T Consensus 234 ---------------------~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 234 ---------------------AAKKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ---------------------cccccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 0000111222 22221 11222222222233445566677777774 5677776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccc
Q 043907 185 LLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY 264 (330)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (330)
......++...++.++.|+++||+|||+.+..+..+..++...+..... .....+.......+...+.+.
T Consensus 290 -~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 290 -NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHHH
Confidence 4555667778888999999999999999888776555444333222110 011222222222222223222
Q ss_pred ccccccccccccccchhhhhhhhhHHHHHHH-HHHHHHHHhhhhHHhhc
Q 043907 265 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNF-VFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 265 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 312 (330)
. .+..+.+++|.+|++.|+++.|+.+.... +++.++|.+.+.+.+..
T Consensus 360 ~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 360 V-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred H-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23446677899999999999999776654 78899999999998855
No 12
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.97 E-value=1.3e-28 Score=207.08 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=170.5
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~----------------- 56 (330)
+++|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|...+
T Consensus 81 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 160 (432)
T PRK10406 81 WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160 (432)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence 5789999999999999999999999999999998864 689999999999998776
Q ss_pred ----------------------cc--------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907 57 ----------------------IK--------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ 106 (330)
Q Consensus 57 ----------------------~~--------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~ 106 (330)
+. +.+|||++|++.+++.++.......+||+|++ ++.
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~--------~~~----- 227 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ--------ETR----- 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH--------HHh-----
Confidence 11 25799999999888877765555567887642 100
Q ss_pred HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhH
Q 043907 107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLL 185 (330)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 185 (330)
+ + +++.+++++++++ +.+.......+.....++....|.|.+++ ..|.+..+.+
T Consensus 228 ----------------~--~---~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~- 282 (432)
T PRK10406 228 ----------------A--L---KEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVAS- 282 (432)
T ss_pred ----------------h--h---cccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence 0 0 0012455555422 22222222222223445667788888875 5788887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
...+...+...++.++.|+++||++||+.+.....+..+....+..... ...+...............+.
T Consensus 283 ~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~- 352 (432)
T PRK10406 283 GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---------NVSSPYAAFGLVMCALLIVSF- 352 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHHHHHHH-
Confidence 6677777778888999999999999999876655544333322211110 001112111111111111111
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHH-HHHHHHhhhhHHhhcc
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVF-TFLTAQTFLPMLCHFK 313 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g 313 (330)
..+..+.+.+|.+|++.|+++.|+.+..++.. +...|.+.+ +.+..|
T Consensus 353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g 400 (432)
T PRK10406 353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIG 400 (432)
T ss_pred HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhC
Confidence 12234566789999999999999999877653 445666666 445556
No 13
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.97 E-value=3.8e-28 Score=201.52 Aligned_cols=282 Identities=13% Similarity=0.051 Sum_probs=190.8
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++.|+++||+|||+++..+.++.+++.+.+++++|++.+++.|++.|++.+...+
T Consensus 55 ~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (377)
T TIGR00890 55 MPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGG 134 (377)
T ss_pred hhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999886543
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHh-hcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAI-FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+..+ +++|+|+.. ++++ +
T Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~---------------------- 189 (377)
T TIGR00890 135 YGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN--I---------------------- 189 (377)
T ss_pred cchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC--c----------------------
Confidence 33446899999998887766655543 455443210 0000 0
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
+.++++.+.++.++++..+.... ..+...........+.+.+.++.|.++.+.+ .......+...+++++
T Consensus 190 -----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 259 (377)
T TIGR00890 190 -----EVSVKDYTVWEMLRTPQFWVLYL----SFFLNAVSGLLLIGLYKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPF 259 (377)
T ss_pred -----ccchhhhhHHHHHcCccHHHHHH----HHHHHhHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 00000112333443332222222 1222222223334455666677888877777 7888899999999999
Q ss_pred HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907 202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE 281 (330)
Q Consensus 202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 281 (330)
.+++.||+|||+.+..+.....++.+.+... +..............+.+.+... +....++.|.+|++
T Consensus 260 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~ 327 (377)
T TIGR00890 260 LGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----------PMLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPA 327 (377)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----------ccchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhh
Confidence 9999999999999888877777766555432 11112222222222333333222 23345668999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHhhc
Q 043907 282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMTS 329 (330)
Q Consensus 282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 329 (330)
+|+++.|+.+....+++.++|.+.+.+.++.|+ ..+.+.+++++++.+
T Consensus 328 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~~ 376 (377)
T TIGR00890 328 NSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSLA 376 (377)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999885 566677766666543
No 14
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.96 E-value=5.5e-28 Score=203.56 Aligned_cols=276 Identities=16% Similarity=0.174 Sum_probs=182.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.|...+
T Consensus 71 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 150 (426)
T PRK12307 71 ALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSG 150 (426)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence 5789999999999999999999999999999999999999999999999887665
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+..+||+.|++..+..++........||++++..++.+ + +++
T Consensus 151 ~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~---~----------~~~--------- 208 (426)
T PRK12307 151 FGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS---G----------KGK--------- 208 (426)
T ss_pred HhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh---c----------ccc---------
Confidence 3456799999988655444333333335666543111000 0 000
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS 202 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (330)
+..+..+..+.++++.++++..+......... +...........+.|.+.++.|.++.+.+ ...+...++.+++.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~ 286 (426)
T PRK12307 209 HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVS-NLMTAAAFGTVLGNIVW 286 (426)
T ss_pred ccccchhhhhHHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00000000112355566544433333222222 22223333456678888888888888877 77788889999999999
Q ss_pred HHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcc-cccccccccccccccccchh
Q 043907 203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSG-YCYSWGPLAWLVPSEIFPLE 281 (330)
Q Consensus 203 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~ 281 (330)
+++.||++||+....+..+..+..+.+... +....... ....++.+ ...+..+....++.|.+|++
T Consensus 287 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 353 (426)
T PRK12307 287 GLCADRIGLKKTFSIGLLMSFLFIFPLFRI-----------PQDNYLLL--GACLFGLMATNVGVGGLVPKFLYDYFPLE 353 (426)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------ccccHHHH--HHHHHHHHHhcccHhHHHHHHHHHhCcHH
Confidence 999999999998887776665554433322 11111111 11111111 11222333445568999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907 282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA 314 (330)
Q Consensus 282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 314 (330)
.|+++.|+.+....+++.++|.+.+.+.+..|.
T Consensus 354 ~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 354 VRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 999999999999999999999999999998883
No 15
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.96 E-value=7.3e-28 Score=201.73 Aligned_cols=286 Identities=15% Similarity=0.130 Sum_probs=181.1
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|.++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+
T Consensus 65 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 144 (405)
T TIGR00891 65 LMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISG 144 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999888765
Q ss_pred --------------ccCcc--chHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907 57 --------------IKGGW--GWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120 (330)
Q Consensus 57 --------------~~~~~--~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (330)
+.+.. +||+.|.+.+++.++..+....+||+|++..++++ .++.++..++..+.++ ..
T Consensus 145 ~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~-- 218 (405)
T TIGR00891 145 YAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEH---RI-- 218 (405)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccch---hh--
Confidence 22233 49999988777666666666678998764322211 1111111111110000 00
Q ss_pred HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907 121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLA 199 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 199 (330)
+. ..++.....++. ....+..+...................+.|.++ ++.|++..+.+ .......++.+++.
T Consensus 219 -~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~g~ 291 (405)
T TIGR00891 219 -AN---IVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA-NIVVFSNIGAIVGG 291 (405)
T ss_pred -hh---hhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHH
Confidence 00 000000011111 111111121122222211222234445667666 46789988888 88888999999999
Q ss_pred HHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907 200 IISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP 279 (330)
Q Consensus 200 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 279 (330)
++.+++.||+|||+.+..+.....+........ ..+.+.............. +..+....++.|.+|
T Consensus 292 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 358 (405)
T TIGR00891 292 CVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFP 358 (405)
T ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCC
Confidence 999999999999998877765543322222111 1222222222222222222 222344556689999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+++|+++.|+.+....+++.++|.+.+.+.|..|
T Consensus 359 ~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 359 TDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988
No 16
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.96 E-value=4e-28 Score=202.42 Aligned_cols=297 Identities=14% Similarity=0.132 Sum_probs=186.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++++++++++++++|++++++.|+++|++.+...+
T Consensus 61 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 140 (412)
T TIGR02332 61 IPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140 (412)
T ss_pred hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998766
Q ss_pred --------------cc------CccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907 57 --------------IK------GGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK 115 (330)
Q Consensus 57 --------------~~------~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (330)
+. +..|||+.|.+.+++.++..+ ..+++||+|+... .-+ .++.+...+..+++.. +
T Consensus 141 ~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~-~~~~~~~~~~~~~~~~-~ 217 (412)
T TIGR02332 141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLD-EEDKKALKEMIDNDQL-T 217 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCC-HHHHHHHHHHHHhccc-c
Confidence 11 246999999998877766544 4566899985210 001 1111111111111000 0
Q ss_pred HHHHHHHHhcccc-ccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc--CCCCchhhHHHHHHHH
Q 043907 116 AELNDLIRASSTS-KSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL--KLGESTSLLLSAVVAG 192 (330)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~ 192 (330)
.++.++..+++ .+.+..++++++ +.++...+..+........+..|.|.++++. +.+..+.+ .......
T Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~-~~~~~~~ 289 (412)
T TIGR02332 218 --LEQPEGAFAHAAMPQRSMLREIFT-----PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIG-LLAAIPQ 289 (412)
T ss_pred --ccccccccccccccHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH-HHhhHHH
Confidence 00000000000 000112333321 2234444445555566777888999999874 55666677 7788899
Q ss_pred HHHHHHHHHHHHHHHHhCcchhh-hHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907 193 GMGTVLAIISMILADKFGRKVLF-LVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW 271 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (330)
++..++.++.|+++||++||+.. ........+.. .+... . ...............+.... .+..+
T Consensus 290 l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~~~~~~~~g~~~~-~~~~~ 355 (412)
T TIGR02332 290 FCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----------T-DHNLIQLLGIIMASMGSFSA-MAIFW 355 (412)
T ss_pred HHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----------c-CCHHHHHHHHHHHHHHhhhh-hhHHH
Confidence 99999999999999999977753 33332333222 11111 0 11111111122222122111 22334
Q ss_pred cccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHH
Q 043907 272 LVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGL 323 (330)
Q Consensus 272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~ 323 (330)
....|.+|+++|+++.|+.+...+++++++|.+.+.+.|..| + ..+++.+++
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 555688999999999999999999999999999999999886 4 455554443
No 17
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=199.16 Aligned_cols=315 Identities=21% Similarity=0.243 Sum_probs=218.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHhhcccccccc------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFN-------IYMLIFGRLLLGVGIGFGNQ------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~~~g~~~~------------------ 56 (330)
++.|+++||+|||+++...++++.+++++++++.. ..++...|++.|+|.|+.+|
T Consensus 102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~ 181 (538)
T KOG0252|consen 102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF 181 (538)
T ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence 46899999999999999999999999998877621 37889999999999999999
Q ss_pred -----------------------------ccC-------ccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHH
Q 043907 57 -----------------------------IKG-------GWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQK 100 (330)
Q Consensus 57 -----------------------------~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~ 100 (330)
+.. ..-||..+.+++++.+..+...+.+|||++|.....++.+.
T Consensus 182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~ 261 (538)
T KOG0252|consen 182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQ 261 (538)
T ss_pred eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhh
Confidence 111 12499999999999999988899999999986433332333
Q ss_pred HHHHHHHHhcccchhHHHHHHHHhccc-cccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCC
Q 043907 101 AQKMLQRIRGISDVKAELNDLIRASST-SKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLG 179 (330)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 179 (330)
+. ++.++..+.+.+.++..+...+ +++....+...+.+.+- +.+......++..-..++....+...+++..|+.
T Consensus 262 a~---~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~ 337 (538)
T KOG0252|consen 262 AA---GDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVI 337 (538)
T ss_pred hh---hccccccccccchhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccC
Confidence 33 2222221111111111111111 11111112223322222 3455566667766777888888899999988876
Q ss_pred CchhhH--------HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHH
Q 043907 180 ESTSLL--------LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLI 251 (330)
Q Consensus 180 ~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+.+... ....+.....++|..+...++|++|||+..+.+..++.+..+.++.... ........
T Consensus 338 ~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~---------~~~~~~Gf 408 (538)
T KOG0252|consen 338 PSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN---------QLENTIGF 408 (538)
T ss_pred CCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc---------cccccCce
Confidence 654431 1122333444456677778899999999999999999988887776420 01233334
Q ss_pred HHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh-----hcc-chhHHHHHHHHH
Q 043907 252 LVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC-----HFK-AGIFFFFGGLVL 325 (330)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~g-~~~~~~~~~~~~ 325 (330)
.++..+...+...+.+.....+.+|.+|++.|+++.|+....+-.|+.++...+.++.+ ..+ .+++++++++++
T Consensus 409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~ 488 (538)
T KOG0252|consen 409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCML 488 (538)
T ss_pred eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHH
Confidence 44444455555667777777888999999999999999999999999999999999998 555 588999999988
Q ss_pred Hhhc
Q 043907 326 IMTS 329 (330)
Q Consensus 326 ~~~~ 329 (330)
++.+
T Consensus 489 ~gi~ 492 (538)
T KOG0252|consen 489 LGIL 492 (538)
T ss_pred HhHh
Confidence 7754
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.96 E-value=2.9e-27 Score=197.91 Aligned_cols=265 Identities=17% Similarity=0.187 Sum_probs=182.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+
T Consensus 68 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 147 (406)
T PRK11551 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCG 147 (406)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999887665
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+ ...++||+|++..++++ .++.
T Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-------------------- 206 (406)
T PRK11551 148 VPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-GKQR-------------------- 206 (406)
T ss_pred HHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-chhh--------------------
Confidence 34557899999887765554443 34568998764322111 0000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
+...++.++++..++. .......+......+....+.|.+.++.|+++.+.+ .......++.+++.++
T Consensus 207 ----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~ 274 (406)
T PRK11551 207 ----------APVLRALFGEGRATAT-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAG-LVQIAFNIGGALGSLL 274 (406)
T ss_pred ----------hhhHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhh-HHHHHHHHHHHHHHHH
Confidence 0001111111111111 111122222223345566788999988899988888 8888889999999999
Q ss_pred HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907 202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE 281 (330)
Q Consensus 202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 281 (330)
.|++.||+|||+.+..+.....++...+... .+.+.........+.+.. +..+....+..|.+|++
T Consensus 275 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~ 340 (406)
T PRK11551 275 IGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQ 340 (406)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchh
Confidence 9999999999998877655555544433321 222222222232322222 23345556778999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+|+++.|+.+....++..++|.+.+.+.++.+
T Consensus 341 ~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~ 372 (406)
T PRK11551 341 VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR 372 (406)
T ss_pred hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence 99999999999999999999999999998765
No 19
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.8e-27 Score=187.29 Aligned_cols=271 Identities=17% Similarity=0.131 Sum_probs=191.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+|+...+.||+.||++++..+.++.++++++++++||+.++++|++.|+..|...+
T Consensus 65 ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~ 144 (394)
T COG2814 65 APLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFT 144 (394)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999887
Q ss_pred ---------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907 57 ---------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120 (330)
Q Consensus 57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (330)
+.+.+|||..|+..+..+++..+. +..+| |+.. +++
T Consensus 145 G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~------------------------ 196 (394)
T COG2814 145 GLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SGS------------------------ 196 (394)
T ss_pred HHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CCC------------------------
Confidence 788899999999999888887666 44577 2200 000
Q ss_pred HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907 121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSAVVAGGMGTVLA 199 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 199 (330)
.+.+..+..+.++++..+..+. ..+..+.+.+...+|. |.+.+..|++.+... +....++++..+|+
T Consensus 197 -------~~~~~~~~~~~l~~p~v~~~l~----~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn 264 (394)
T COG2814 197 -------LPGPLRTLLRLLRRPGVLLGLL----ATFLFMTGHFALYTYIRPFLESVAGFSVSAVS-LVLLAFGIAGFIGN 264 (394)
T ss_pred -------CCcchhHHHHHhcCchHHHHHH----HHHHHHcchhhhHHhHHHHHHHccCCCHhHHH-HHHHHHHHHHHHHH
Confidence 0000111233344433333332 2333334455555555 445566899999999 99999999999999
Q ss_pred HHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907 200 IISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP 279 (330)
Q Consensus 200 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 279 (330)
.++|++.|| +.|+.+.....+..+..+.+.+.. .+.+.......+.+........ ......++ .-
T Consensus 265 ~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~-~~ 329 (394)
T COG2814 265 LLGGRLADR-GPRRALIAALLLLALALLALTFTG------------ASPALALALLFLWGFAFSPALQ-GLQTRLAR-LA 329 (394)
T ss_pred HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhh-HHHHHhcc-cC
Confidence 999999999 888888888788877777766641 3334444444432222221111 11222344 33
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
++.++.+.+++....+++..++..++|.+.|+.|+ ...++-+...++
T Consensus 330 p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~ 377 (394)
T COG2814 330 PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLL 377 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999884 445554444443
No 20
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.96 E-value=3.5e-27 Score=198.39 Aligned_cols=295 Identities=14% Similarity=0.086 Sum_probs=183.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++.++.++.+++.+++++++|++.+.+.|++.|++.|...+
T Consensus 76 ~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 155 (434)
T PRK11663 76 FVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA 155 (434)
T ss_pred hhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998886655
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHH-HHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILT-IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+.+|||+.|.+.++..++.. +..+++||+|++...... .++.++ + ++.
T Consensus 156 ~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~-------------~-~~~ 220 (434)
T PRK11663 156 HNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRHD-------------A-LEL 220 (434)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-cccccc-------------c-ccc
Confidence 4456799999998887655543 345567888764211111 000000 0 000
Q ss_pred HHhccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLA 199 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 199 (330)
. ++.++++.+.++.+++ ..+++.++......+........+..+.|.++ ++.|++..+.+ ...+...++..++.
T Consensus 221 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~ 296 (434)
T PRK11663 221 A---QQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTAN-SAVSMFELGGFIGA 296 (434)
T ss_pred c---hhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHH
Confidence 0 0000011122222211 11222333333333333344556677888888 56799988888 88888899999999
Q ss_pred HHHHHHHHHh--Ccchhh-hHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907 200 IISMILADKF--GRKVLF-LVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE 276 (330)
Q Consensus 200 ~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 276 (330)
++.|++.||+ ++|+.. ........+....+... +..+...........+. ...+..........|
T Consensus 297 ~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 364 (434)
T PRK11663 297 LVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------PFASYVMQAACFFTIGF-FVFGPQMLIGMAAAE 364 (434)
T ss_pred HHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------ccccHHHHHHHHHHHHH-HHhhHHHHHHHHHHh
Confidence 9999999998 333332 22211222121111111 11111111111111111 111111122344579
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
.+|++.|+++.|+.++..+++++++|.+.+.+.|..|+ ..|...+++++++
T Consensus 365 ~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~ 416 (434)
T PRK11663 365 CSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS 416 (434)
T ss_pred cccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999885 5666666655543
No 21
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.96 E-value=7.8e-27 Score=194.82 Aligned_cols=279 Identities=19% Similarity=0.204 Sum_probs=183.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~----------------- 56 (330)
++.|+++||+|||+++..+.++..++.+++++++++. .+++.|+++|++.+...+
T Consensus 53 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 132 (394)
T TIGR00883 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGF 132 (394)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchH
Confidence 5789999999999999999999999999999998875 488999999999887654
Q ss_pred ----------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907 57 ----------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ 106 (330)
Q Consensus 57 ----------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~ 106 (330)
+ .+.++||+.|.+.++..++........||+|++..++
T Consensus 133 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (394)
T TIGR00883 133 YGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ------------ 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH------------
Confidence 0 1357899999887776666555555567765421100
Q ss_pred HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhH
Q 043907 107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLL 185 (330)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 185 (330)
+++++.+.+.++.++++. ++... .....+...........+.|.+. ++.|.++.+.+
T Consensus 201 -------------------~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 258 (394)
T TIGR00883 201 -------------------EKHKKKRGPIRETLTKHR-KPFLL-GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSAL- 258 (394)
T ss_pred -------------------hccccccCCHHHHHHhch-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-
Confidence 001111233444443322 12222 22233333344556667888888 56788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
.......+...++.++.+++.||+|||+.+.....+..+.......... .+.+.+.........+.+.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 259 LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---------DSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHHHHHH
Confidence 7888888999999999999999999999877554444333221111110 1122333333333333333333
Q ss_pred cccccccccccccchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHH
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLV 324 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 324 (330)
.. ....++.|.+|++.|+++.++.+ ....+++.++|.+.+.+.++.| +...+...+++
T Consensus 330 ~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 330 TG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 33 44567789999999999999854 4456788899999999999988 54444444433
No 22
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.96 E-value=1.1e-26 Score=189.96 Aligned_cols=270 Identities=13% Similarity=0.076 Sum_probs=166.5
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+......+.+.....+|++++++.|+++|++.+...+
T Consensus 44 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~ 123 (368)
T TIGR00903 44 IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAM 123 (368)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5689999999999987766555555443333337999999999999999986433
Q ss_pred -------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 -------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 -------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+.+|||+.|++.++++++..+ ..+++||+|++.. ++ .+. ++.
T Consensus 124 ~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~--~~-~~~------------------~~~- 181 (368)
T TIGR00903 124 YLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA--EG-FGF------------------KDA- 181 (368)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-cch------------------HHH-
Confidence 55568999999997776655444 4566899986421 00 000 000
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS 202 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (330)
.++++++++++. ++...+..+......+.+..|.|.++++.|++.. .+ .......+...++ .
T Consensus 182 ---------~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~ 243 (368)
T TIGR00903 182 ---------VKEFGALAGRKD----LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AG-DAVALAILAGLIG---V 243 (368)
T ss_pred ---------HHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HH-HHHHHHHHHHHHH---H
Confidence 012455555432 3344444555556677888999999988887754 44 4444444444444 4
Q ss_pred HHHHHHhCcc---hhhhH-hhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907 203 MILADKFGRK---VLFLV-GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF 278 (330)
Q Consensus 203 g~l~d~~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 278 (330)
++++||..|| +.... .....++....+... .+......+..+...+.. ...+..+.+.+|.+
T Consensus 244 ~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 309 (368)
T TIGR00903 244 AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-------------LNRLALFAFIGIAGLLML-PAYAIIMDWIGKFC 309 (368)
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-------------cccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhc
Confidence 7778877543 33222 222222222222211 112222222222222222 22234567778999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 327 (330)
|++.|+++.|+.+..+++++..+|.+.+.+.. + ...|.++++..+++
T Consensus 310 p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~ 357 (368)
T TIGR00903 310 DKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIA 357 (368)
T ss_pred chhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988774 4 45566666555544
No 23
>PRK15075 citrate-proton symporter; Provisional
Probab=99.95 E-value=6.7e-27 Score=196.77 Aligned_cols=267 Identities=18% Similarity=0.266 Sum_probs=166.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~----------------- 56 (330)
++.|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.|...+
T Consensus 74 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 153 (434)
T PRK15075 74 IVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF 153 (434)
T ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH
Confidence 4679999999999999999999999999999999987 468999999999987654
Q ss_pred ----------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907 57 ----------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ 106 (330)
Q Consensus 57 ----------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~ 106 (330)
+ .+.+|||++|++..+...+........||++++..++
T Consensus 154 ~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------------ 221 (434)
T PRK15075 154 YTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------------ 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------------
Confidence 1 2457999999876544322222222233332110000
Q ss_pred HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhH
Q 043907 107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLL 185 (330)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 185 (330)
++.+.+..+++..++ + +.........+.....++....|.|.++++ .|++..+..
T Consensus 222 --------------------~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~- 277 (434)
T PRK15075 222 --------------------HRPSMREIFRSLAAN--W-RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSL- 277 (434)
T ss_pred --------------------hccccccHHHHHHHh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence 000001112221111 1 222222222223344566778889998875 799888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
.......++.+++.++.|+++||+|||+.+..+.....+......... . +................+.+ .
T Consensus 278 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~g-~ 347 (434)
T PRK15075 278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-V--------AAPSFARMLAVELWLSFLYG-S 347 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-H--------cCCchHHHHHHHHHHHHHHH-H
Confidence 777888889999999999999999999987765444332211111110 0 01111111111111122222 2
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHhhccc
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLCHFKA 314 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~ 314 (330)
..+..+.+..|.+|++.|+++.++.+..... ++.++|.+.+.+.|..|+
T Consensus 348 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 348 YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 2233345668999999999999997666555 588899999999998873
No 24
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.95 E-value=3.6e-26 Score=196.77 Aligned_cols=288 Identities=18% Similarity=0.183 Sum_probs=201.0
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
++++|+++||+|||++++.++++..++.+..++++|++.+++.|+++|++.++...
T Consensus 135 ~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~ 214 (521)
T KOG0255|consen 135 SLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGF 214 (521)
T ss_pred HhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999998876
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc----chhHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS----DVKAEL 118 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 118 (330)
+.. +||+.+++..++.++.++..++.||||||+..+++ .+++.+.+++..+.| +.++..
T Consensus 215 ~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~-~~~a~~~l~~~a~~n~~~~~~~~~~ 291 (521)
T KOG0255|consen 215 FFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR-IDEAIKILKKIAKLNGRKLSVKELL 291 (521)
T ss_pred HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc-hHHHHHHHHHHHhhcCCCCCcHHHH
Confidence 222 79999999999988877776667799999999999 999999888875432 111111
Q ss_pred HHH---HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 043907 119 NDL---IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMG 195 (330)
Q Consensus 119 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 195 (330)
++. +.......+.+..+.++++.+..++......+..+.....++.... ... +++.+.. ......+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~----~~~--~lg~~~~--~~~~~~~~~~ 363 (521)
T KOG0255|consen 292 RLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL----NVS--GLGGNIY--LNFTLSGLVE 363 (521)
T ss_pred HHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh----hhh--hcCchHH--HHHHHHHHHH
Confidence 111 1111111112345777776553333333233333221111121111 112 2333322 3455556688
Q ss_pred HHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907 196 TVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS 275 (330)
Q Consensus 196 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (330)
..+....+...|+.|||.....+.....++++..++... ....+...+...+...+.+.++... +.+.+
T Consensus 364 ~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 432 (521)
T KOG0255|consen 364 LPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLGGWLHWILPLLGKFFIGSAFNLI-FLYSA 432 (521)
T ss_pred hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 888888899999999999999999999999988887631 1111233333333344444455544 77789
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
|.+|+..|..+.+..+....+++.++|.+......
T Consensus 433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999988865544
No 25
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=182.49 Aligned_cols=297 Identities=12% Similarity=0.112 Sum_probs=206.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|.++||.++|+.+.+++++.++.+++++++++...+.+..+++|...|.-.|
T Consensus 82 f~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~s 161 (448)
T COG2271 82 FVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTS 161 (448)
T ss_pred HHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhh
Confidence 3679999999999999999999999999999999999999999999999988877
Q ss_pred ----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907 57 ----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN 119 (330)
Q Consensus 57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (330)
+..+.+||..|++.++.+++..+. .+..+|+|+-. +- ...++.+++ ..
T Consensus 162 hNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL------P~ie~~~~d------~~ 226 (448)
T COG2271 162 HNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL------PPIEEYRGD------PL 226 (448)
T ss_pred hhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC------CCHHHhhcC------ch
Confidence 234559999999999887776554 55688888521 11 000111100 00
Q ss_pred HHHHhccccccCccchHHhc-ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHH
Q 043907 120 DLIRASSTSKSITQPFKNII-QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTV 197 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 197 (330)
|.. .++++.+..+.++++ +.-.+++.++...+........-+.+..|.|.++ |..|++..++. ...+.+-.++++
T Consensus 227 e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~ 303 (448)
T COG2271 227 EIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN-WAISLFEVAGLP 303 (448)
T ss_pred hhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhH
Confidence 000 111111113444444 3446667788888888877788899999999998 45799999999 999999999999
Q ss_pred HHHHHHHHHHHh--CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907 198 LAIISMILADKF--GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS 275 (330)
Q Consensus 198 ~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (330)
|+++.|+++||+ |||.+..+...+.....+...+.. ++.+.+...++....+.. -.+..-+.-....
T Consensus 304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----------~~~~~~l~~~~l~~iGf~-IyGPqmLiGl~a~ 372 (448)
T COG2271 304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----------PNGSYLLDAILLFIIGFL-IYGPQMLIGLAAA 372 (448)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----------CCccHHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence 999999999996 677655443333333333322221 223233333333333222 2222223345557
Q ss_pred cccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 276 EIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 276 e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
|..|++..|++.|+...++++ |...+....+.+.|.+|| +.|.++.+.++++
T Consensus 373 e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~ 426 (448)
T COG2271 373 EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLA 426 (448)
T ss_pred ccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHH
Confidence 999999999999999999999 888889999999999886 5665555555444
No 26
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.95 E-value=1.7e-26 Score=193.04 Aligned_cols=301 Identities=16% Similarity=0.174 Sum_probs=189.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+
T Consensus 47 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 126 (399)
T TIGR00893 47 FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA 126 (399)
T ss_pred HhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999887765
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|.+.++..++..+. .+..||+|+... +.+ +++..+..++. .++
T Consensus 127 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~---------~~~- 194 (399)
T TIGR00893 127 QGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-WLT-EEEKYIVVGGL---------LAE- 194 (399)
T ss_pred chHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccc-cCC-HHHHhhcchhh---------ccc-
Confidence 345578999999888776665544 344677654110 001 11100000000 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
.++.+++++.+.+.++.+++ +.+....+..+...........+.|.+.+ ..|.++.+.+ .......+...++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 269 (399)
T TIGR00893 195 QQGKGPSTPKKYQIKELLKD----RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMI 269 (399)
T ss_pred cccccccCCCccchHHHhcC----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHH
Confidence 00011111122334444433 22333333344444555667777888775 5688888888 888888999999999
Q ss_pred HHHHHHHHhCcchhhhH-hhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907 201 ISMILADKFGRKVLFLV-GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP 279 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 279 (330)
+.+++.||++||+.... ......++.+........ . . .....+........ . +...+..+....+..|..|
T Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 341 (399)
T TIGR00893 270 LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA-T-N----YVNIPYAALALVAL-G-FFGLGAGAIGWALISDNAP 341 (399)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH-h-c----cchhHHHHHHHHHH-H-HhchhhhhHHHHHHHhhcC
Confidence 99999999999962111 111111111111111000 0 0 01122222222222 2 2222345666778899999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHHHHHh
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGLVLIM 327 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~ 327 (330)
+++|+++.|+.+....+++.++|.+.+.+.|..| + ..+++.+++++++
T Consensus 342 ~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 391 (399)
T TIGR00893 342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIG 391 (399)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887 5 4555555554443
No 27
>TIGR00895 2A0115 benzoate transport.
Probab=99.95 E-value=3.9e-26 Score=190.87 Aligned_cols=288 Identities=20% Similarity=0.240 Sum_probs=186.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+
T Consensus 70 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 149 (398)
T TIGR00895 70 LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149 (398)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence 5789999999999999999999999999999999999999999999999987765
Q ss_pred --------------ccCccchHHHHHhhhHHHHH-HHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASI-LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~-~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.+++.++..++ ..+...++||+|++..++ + .++..+..++.......+.+ ++.
T Consensus 150 ~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~ 226 (398)
T TIGR00895 150 YPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQ-SAL 226 (398)
T ss_pred HHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-C-HHHHHHHHHHHHHhcccccc-ccc
Confidence 44567899999887644444 444456689988765443 2 33333322222211100000 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
.++.+++++.+...+..++++..++.. ...+..+...........+.|.+.++.|.++.+.+ .......++.+++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 304 (398)
T TIGR00895 227 PEQKATQGTKRSVFKALFQGKTARITV-LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAA-TGGALFNFGGVIGSII 304 (398)
T ss_pred cccccccchhhHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 000000011111222233332222222 22333333444556667788877788899988888 8888899999999999
Q ss_pred HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907 202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE 281 (330)
Q Consensus 202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 281 (330)
.+++.||++||+... ......+....+.... .+.+......++.+.+.+.. .+....++.|.+|++
T Consensus 305 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 370 (398)
T TIGR00895 305 FGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL------------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTA 370 (398)
T ss_pred HHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHH
Confidence 999999999994443 3333333333322211 22233333444444444433 334566778999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 282 IRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
+|+++.|+.+....++..++|.+.|.+
T Consensus 371 ~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 371 IRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999998865
No 28
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.95 E-value=1.4e-25 Score=186.30 Aligned_cols=267 Identities=15% Similarity=0.088 Sum_probs=177.7
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++.|+++||+|||+++..+..+++++.+.+++++|++.++++|+++|++.+...+
T Consensus 61 ~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (393)
T PRK09705 61 ALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAA 140 (393)
T ss_pred hhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999998766
Q ss_pred --------------ccCc-cchHHHHHhhhHHHHHHHHHHhhc-CCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907 57 --------------IKGG-WGWRISLAMAAAPASILTIGAIFL-PETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120 (330)
Q Consensus 57 --------------~~~~-~~wr~~~~~~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (330)
+.+. .+||+.+.+.++..++.....+.. ++.|+ + +
T Consensus 141 ~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~--------------------- 191 (393)
T PRK09705 141 LMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA------S--S--------------------- 191 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc------c--c---------------------
Confidence 2333 379987766555444333322222 11110 0 0
Q ss_pred HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+++ +.+.++.++++ +. +...+.......++.....+.|.++++.|.+..+.+ ...++..++.+++++
T Consensus 192 -----~~~---~~~~~~~l~~~---~~-~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~ 258 (393)
T PRK09705 192 -----HKT---TTTPVRVVFTP---RA-WTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG-SLLALMTLGQAAGAL 258 (393)
T ss_pred -----cCC---CcCCcccccCH---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHH
Confidence 000 00111122221 11 222222333334556777888988888899988888 888999999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-c
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-P 279 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p 279 (330)
+.+++.||.+||+....+..+..++...+... +... ..... .+.+.+.+... +.......+.. |
T Consensus 259 ~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~-~~~~~--~l~g~g~g~~~-~~~~~~~~~~~~~ 323 (393)
T PRK09705 259 LMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------PLQL-PVLWA--MVCGLGLGGAF-PLCLLLALDHSVQ 323 (393)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------cchH-HHHHH--HHHHHhccchH-HHHHHHHHhhcCC
Confidence 99999999999998888776666655544322 1111 11111 22223333222 23333334555 5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-ch-hHHHHHHHH
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AG-IFFFFGGLV 324 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~ 324 (330)
+++|++..|+.+...++++.++|.+.+++.|..| +. .+.+.++++
T Consensus 324 ~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~ 370 (393)
T PRK09705 324 PAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV 370 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 7889999999999999999999999999999987 43 344433333
No 29
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.95 E-value=8.5e-26 Score=191.77 Aligned_cols=296 Identities=9% Similarity=-0.054 Sum_probs=179.7
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcccccccc--------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS-----AFNIYMLIFGRLLLGVGIGFGNQ-------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~-------------------- 56 (330)
++.|+++||+|||+++..+.+++++..+..+. ++|++.+++.|+++|++.+...+
T Consensus 82 ~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~g 161 (467)
T PRK09556 82 TLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLG 161 (467)
T ss_pred hhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEE
Confidence 57899999999999999988888877776654 58999999999999999887765
Q ss_pred -------------------ccCc---cchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907 57 -------------------IKGG---WGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD 113 (330)
Q Consensus 57 -------------------~~~~---~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (330)
.... .+||..|.+.+++.++..+. .++.+|+|+..... + .++ . .. +.
T Consensus 162 i~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~-~~~---~---~~-~~- 231 (467)
T PRK09556 162 FWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-K-AEE---I---FG-EP- 231 (467)
T ss_pred eeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-C-hhh---c---cc-Cc-
Confidence 1111 25888888877666655444 44467776421100 1 111 0 00 00
Q ss_pred hhHHHHHHHHhccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHH
Q 043907 114 VKAELNDLIRASSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVA 191 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 191 (330)
.+++ + + +.++ ++.+.++.+++ ..+++.++...+..+...........|.|.+++ +.|++..+.+ ......
T Consensus 232 ~~~~--~--~--~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~ 303 (467)
T PRK09556 232 ISEE--D--K--ETES-TDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTLF 303 (467)
T ss_pred cchh--h--h--cccc-ccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHH
Confidence 0000 0 0 0000 01111121111 122233444444444444555667788998885 5799998888 788888
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907 192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW 271 (330)
Q Consensus 192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (330)
.++..++.++.|+++||++||+..........+....+... ...+.....+..+..+... .+......
T Consensus 304 ~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~-~~~~~~~~ 371 (467)
T PRK09556 304 EIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-----------HATSEYMYLASLFALGFLV-FGPQLLIG 371 (467)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-----------hcCcHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 89999999999999999999987665443333322221111 0112222222222222211 11111212
Q ss_pred cccccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHh------------hccc-hhHHHHHHHHHHh
Q 043907 272 LVPSEIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLC------------HFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 272 ~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~------------~~g~-~~~~~~~~~~~~~ 327 (330)
....|.+|++.||++.|+.+..+++ +++++|.+.|.+.| ..+| ..|++.+++.+++
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~ 441 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGC 441 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHH
Confidence 3446999999999999999999997 66999999999999 4454 4555555555443
No 30
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.95 E-value=1.2e-25 Score=190.07 Aligned_cols=296 Identities=15% Similarity=0.052 Sum_probs=178.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcccccccc---------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF----NIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
++.|+++||+|||+++..+.++.+++.+.+++++ +++.+++.|++.|++.|...+
T Consensus 81 ~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 160 (452)
T PRK11273 81 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 160 (452)
T ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHH
Confidence 6789999999999999999999999999888763 688899999999998887655
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHH-HHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASIL-TIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~-~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
.....+||+.|++.+++.++. .+..+++||+|+....+ + .++.++ +. ++
T Consensus 161 ~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~-------~~--~~ 229 (452)
T PRK11273 161 WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-P-IEEYKN-------DY--PD 229 (452)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-C-hhhhhh-------cc--cc
Confidence 112348999999887766654 34456688887532111 1 111000 00 00
Q ss_pred HHHHHHHhccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHH
Q 043907 117 ELNDLIRASSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGM 194 (330)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 194 (330)
+. +++++++.+.++.+++ ..+++.++...+..+......+....+.|.++++ .|++..+.+ .......++
T Consensus 230 ---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~ 301 (452)
T PRK11273 230 ---DY----NEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYA 301 (452)
T ss_pred ---cc----ccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHH
Confidence 00 0000011122222111 1112333333333333333445667789999865 688888877 777788889
Q ss_pred HHHHHHHHHHHHHHh--CcchhhhH-hhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907 195 GTVLAIISMILADKF--GRKVLFLV-GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW 271 (330)
Q Consensus 195 ~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (330)
.+++.++.|+++||+ +||..... ...+..++...+... +..+.+.........+.... +......
T Consensus 302 ~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 369 (452)
T PRK11273 302 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----------PAGNPTVDMACMIVIGFLIY-GPVMLIG 369 (452)
T ss_pred HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----------cccChHHHHHHHHHHHHHHH-hHHHHHH
Confidence 999999999999999 44543222 222222222222111 11122222222222222111 1111223
Q ss_pred cccccccchhhhhhhhhHHHHHHHHHHHH-HHHhhhhHHhhccc-hhHHHHHHHHHHhh
Q 043907 272 LVPSEIFPLEIRSAGQSITVAVNFVFTFL-TAQTFLPMLCHFKA-GIFFFFGGLVLIMT 328 (330)
Q Consensus 272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 328 (330)
.+..|.+|++.||++.|+.+...++++.+ +|.+.+.+.|+.|+ ..|++.+++++++.
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~ 428 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 428 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34569999999999999999988888765 79999999999884 66666666555543
No 31
>PRK03545 putative arabinose transporter; Provisional
Probab=99.94 E-value=2.2e-25 Score=185.31 Aligned_cols=269 Identities=16% Similarity=0.146 Sum_probs=177.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++..++++.+++++|++++++.|+++|++.+...+
T Consensus 62 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~ 141 (390)
T PRK03545 62 LPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATG 141 (390)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999876554
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..|||+.|++.++.+++..+. ...+||.|+ +++ ++
T Consensus 142 ~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~--~~--------------------- 194 (390)
T PRK03545 142 TALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS--GS--------------------- 194 (390)
T ss_pred HHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc--ch---------------------
Confidence 445679999999988776665444 344666542 000 00
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
.++.++.++++..+........ ..........+.+.+.+ ..|.+..+.+ .......++.+++.+
T Consensus 195 ----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~ 259 (390)
T PRK03545 195 ----------LKSLPLLFRRPALVSLYLLTVV----VVTAHFTAYSYIEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSV 259 (390)
T ss_pred ----------HHHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHH
Confidence 0112334433322222221111 11222333445555554 4688888888 788888899999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||++||... .+..+..++...+... . ++.+....+..+.+.+.. ...+.....+.|..|
T Consensus 260 ~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~-----------~-~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~- 324 (390)
T PRK03545 260 LFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA-----------A-NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP- 324 (390)
T ss_pred HHHHHhhccchhHHH-HHHHHHHHHHHHHHHH-----------h-chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-
Confidence 999999999988654 3444443333332221 1 222333333333333322 222333344557766
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
+.|+++.|+.+...+++..++|.+.|.+.|+.|. ..++..+.+.+++
T Consensus 325 ~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~ 372 (390)
T PRK03545 325 DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAA 372 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999984 5666665555544
No 32
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.94 E-value=3e-25 Score=190.53 Aligned_cols=306 Identities=14% Similarity=0.122 Sum_probs=185.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+.+..+.++.+++.++.++++|++.+++.|++.|++.+...+
T Consensus 73 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 152 (496)
T PRK03893 73 LLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG 152 (496)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999886554
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH-
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL- 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 121 (330)
+.+..+||+.|++..+..++.++.....||++++..++++ .++.++..+.....+.........
T Consensus 153 ~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (496)
T PRK03893 153 FSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRIINILLTL 231 (496)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHHHHHHHH
Confidence 4556899999988666555554455567887764322211 111111111100000000000000
Q ss_pred -H--H-hccccccCccch-------------HH--hcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCc
Q 043907 122 -I--R-ASSTSKSITQPF-------------KN--IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGES 181 (330)
Q Consensus 122 -~--~-~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 181 (330)
. . ...........+ .. ...+..+++.........+...........+.|.+++ +.|++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~ 311 (496)
T PRK03893 232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH 311 (496)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence 0 0 000000000000 00 0001111122222222222222222235567888884 7899998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcc
Q 043907 182 TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSG 261 (330)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (330)
+.+ ...+...++.+++.++.|++.||+|||+.+..+..+..+..+.+... .....+........ ..+
T Consensus 312 ~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~ 378 (496)
T PRK03893 312 TVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLLFF-QQM 378 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHHHH-HHH
Confidence 888 88899999999999999999999999998877665555444332221 11222222121111 111
Q ss_pred cccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907 262 YCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG 321 (330)
Q Consensus 262 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~ 321 (330)
.+.+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.|..|+ ..+...+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 22222334445668999999999999999999999999999999999999884 3443333
No 33
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.94 E-value=1.5e-25 Score=191.32 Aligned_cols=291 Identities=13% Similarity=0.036 Sum_probs=188.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+++..+..+..++++.+++++|++.++++|+++|++.+...+
T Consensus 59 ~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~ 138 (495)
T PRK14995 59 LPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAA 138 (495)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999887654
Q ss_pred ---------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHH---------HHhc-
Q 043907 57 ---------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQ---------RIRG- 110 (330)
Q Consensus 57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~---------~~~~- 110 (330)
+.+..+|||.|++....+++..+. .+++||+|+.. +++ .|....... .+..
T Consensus 139 ~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~-~d~~g~~~~~~~~~~l~~~~~~~ 215 (495)
T PRK14995 139 VGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQP-LNLGHALMLIVAILLLVYSAKTA 215 (495)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCC-CChHhHHHHHHHHHHHHHHHHhc
Confidence 556689999999987766665444 45578765421 111 111111000 0000
Q ss_pred -ccc-hhHH-HHH-------HHHhccccccCccch--HHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cC
Q 043907 111 -ISD-VKAE-LND-------LIRASSTSKSITQPF--KNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LK 177 (330)
Q Consensus 111 -~~~-~~~~-~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 177 (330)
.+. .... ... .......|.+.+.+. .++++++.. ....+..+...........+.|.+++. .|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g 291 (495)
T PRK14995 216 LKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRII----LSGVVMAMTAMITLVGFELLMAQELQFVHG 291 (495)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000 0000 000 000000011111121 234443322 222233333333445556678888765 69
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH
Q 043907 178 LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL 257 (330)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (330)
+++.+++ ....+..+...++.++.|++.||+|+|+.+..+..+..++...+.... ...+.+.......+
T Consensus 292 ~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l 360 (495)
T PRK14995 292 LSPLEAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMAL 360 (495)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHH
Confidence 9999999 888999999999999999999999999988877777766655544321 11222333334445
Q ss_pred hhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
.+.+.+....+. .....+..|+++++.+.++.++...+|+.+++.+.+.+.++
T Consensus 361 ~G~g~g~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 361 LGFSAASALLAS-TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHhHHHHHHHH-HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444433 33446788999999999999999999999999999888653
No 34
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.94 E-value=2.2e-25 Score=185.07 Aligned_cols=288 Identities=13% Similarity=0.088 Sum_probs=176.8
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.+...+
T Consensus 47 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 126 (379)
T TIGR00881 47 KFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNC 126 (379)
T ss_pred hhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhc
Confidence 36789999999999999999999999999999999999999999999999988766
Q ss_pred ----------------ccCccchHHHHHhhhHHHHHHH-HHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907 57 ----------------IKGGWGWRISLAMAAAPASILT-IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN 119 (330)
Q Consensus 57 ----------------~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (330)
+.+..+||+.|++.++..++.. +..++.||+|+....+++ +++. ++ +.+.
T Consensus 127 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~-~~~~- 193 (379)
T TIGR00881 127 SHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA-EEMP----------NE-EPDG- 193 (379)
T ss_pred cchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc-ccCc----------cc-cccc-
Confidence 2345689999988776655544 345557777642111111 0000 00 0000
Q ss_pred HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHH
Q 043907 120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVL 198 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 198 (330)
+.+++.++.++.+...++.++++. ++...+..+...........+.|.+.+ ..|+++.+.+ .......+..+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~ 268 (379)
T TIGR00881 194 DAEKKEEELTKKQIFLQYVLLNKV----LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKAS-WAFTLYELGGLVG 268 (379)
T ss_pred ccccccccccchHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHcchh
Confidence 000000000111112333333322 222333333333444556677787774 5789888888 8888889999999
Q ss_pred HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF 278 (330)
Q Consensus 199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 278 (330)
.++.+++.||..+|+...............+..... .+..+...........+.. ..+..+....+..|..
T Consensus 269 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 339 (379)
T TIGR00881 269 TLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--------NPAANPLMDLICLFALGFL-VYGPQMLIGVIASELA 339 (379)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhc
Confidence 999999999864333222222221111111111100 0112222222222222222 2222233345668999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccch
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG 315 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (330)
|++.|+++.|+.+....+++.++|.+.+.+.|+.|+.
T Consensus 340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 9999999999999999999999999999999988853
No 35
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.94 E-value=5.1e-25 Score=181.99 Aligned_cols=266 Identities=15% Similarity=0.059 Sum_probs=181.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHhhcccccccc--------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF-----NIYMLIFGRLLLGVGIGFGNQ-------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~-------------------- 56 (330)
++.|+++||+|||+++..+..+..++.++.++++ +++.+++.|+++|++.+...+
T Consensus 52 ~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (365)
T TIGR00900 52 PIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANS 131 (365)
T ss_pred HhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5789999999999999999999999998888887 999999999999999987665
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHHHhhc--CCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFL--PETPNSKIQRSDDHQKAQKMLQRIRGISDVK 115 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~--pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (330)
+.+..+||+.|++.++..++..+..+.+ ||+++ +++ .+. + +
T Consensus 132 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~------------~ 193 (365)
T TIGR00900 132 LSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEI-QAL-S------------N 193 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccc-ccc-c------------h
Confidence 4455789999988777665554444333 33221 000 000 0 0
Q ss_pred HHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHH-HhHHHHHHh-cCCCCchhhHHHHHHHHH
Q 043907 116 AELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVG-LYSPVLFRT-LKLGESTSLLLSAVVAGG 193 (330)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 193 (330)
+..+ +.++.+++.++++..+.......+ ......... .+.|.+.++ .|.++.+.+ .......+
T Consensus 194 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 258 (365)
T TIGR00900 194 AVLR----------DTREGIKFVLKNPLLRTLLLLALL----FNLVFAPAIVALFPYVQSKYLGRGSTHYG-WVLAAFGL 258 (365)
T ss_pred hHHH----------HHHhHHHHHHcCcHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHhCCchHHHH-HHHHHHHH
Confidence 0000 001123444443332222222211 112222333 667777765 788888888 88888899
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV 273 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
+.+++.++.+++.||.+||+....+....+++....... + .+.+...+...+.+.+.+.. .+....+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 325 (365)
T TIGR00900 259 GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------P-PNFPLFLVLWFAIGVGYGPI-NVPQGTL 325 (365)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999998887766666655554442 1 12333444444444444433 3445566
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
..|..|+++|+++.|+.+....++..+++.+.+.+.|..|
T Consensus 326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 326 LQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999999988764
No 36
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.93 E-value=2.3e-24 Score=178.76 Aligned_cols=271 Identities=13% Similarity=0.150 Sum_probs=173.3
Q ss_pred cchhhhhhhhchhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 2 LIASSVTRAIGRKVSILI-GGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
++.|+++||+||||.++. +.....++.+++++++|++.+++.|+++|.+.+...+
T Consensus 51 ~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 130 (375)
T TIGR00899 51 QLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVM 130 (375)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 578999999999887654 5666677778888999999999999998876665444
Q ss_pred -----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907 57 -----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL 118 (330)
Q Consensus 57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (330)
+.+..+||+.|++.++..++..+. .+++||+|+... + ++
T Consensus 131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~------------------ 187 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP---G--AL------------------ 187 (375)
T ss_pred HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc---c--cc------------------
Confidence 445578999999988776665554 445888764210 0 00
Q ss_pred HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHH
Q 043907 119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTV 197 (330)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 197 (330)
++.+.++.++++..+.......+.. ........+.|.+. ++.|.++.+.+ ...........+
T Consensus 188 ------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~ 250 (375)
T TIGR00899 188 ------------TRLEVRGLLASRDTRLLFVACTLMW----GCNILYIINMPLLIIHELGLPDKLAG-LMMGTAAGLEIP 250 (375)
T ss_pred ------------CcchhhhhhcCcchHHHHHHHHHHH----HHHHHHHhhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHH
Confidence 0001122232322222222222211 22233344556665 56788888877 666666677788
Q ss_pred HHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907 198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI 277 (330)
Q Consensus 198 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 277 (330)
+.++.+++.||+|||+.+..+.....+........ ++.+.......+.+.+.+.. .+....+..|.
T Consensus 251 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~ 316 (375)
T TIGR00899 251 FMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDL 316 (375)
T ss_pred HHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 88999999999999998877665544433332221 22232333333333333322 23444566788
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 278 FPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 278 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
.|+ +++++.++.+...+++..++|.+.+.+.+..|+ ..+++.+++++++
T Consensus 317 ~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~ 366 (375)
T TIGR00899 317 MPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVA 366 (375)
T ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 876 467999999999999999999999999998884 5566555555443
No 37
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.93 E-value=4.3e-24 Score=176.94 Aligned_cols=267 Identities=14% Similarity=0.098 Sum_probs=170.7
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+
T Consensus 56 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (382)
T PRK10091 56 PIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSG 135 (382)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999886544
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|.+.++..++..+. ..++||.++ +.+ .+.
T Consensus 136 ~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~-~~~--------------------- 189 (382)
T PRK10091 136 MTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAK-GGL--------------------- 189 (382)
T ss_pred HHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccc-cCH---------------------
Confidence 344579999999988766555443 445777542 100 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
++.++ .++++. .+. ..........+......+.+.++ +..|+++.+.+ ...+...++.+++.+
T Consensus 190 ----------~~~~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~ 253 (382)
T PRK10091 190 ----------REQFH-FLRSPA---PWL-IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMT-FIMMLVGLGMVLGNL 253 (382)
T ss_pred ----------HHHHH-HhcChH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhH
Confidence 00011 111211 111 11111111122233334444445 45799988888 888899999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||+++|+....+..+..++.+.+.... +..+...........+......+.......+..|+
T Consensus 254 ~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (382)
T PRK10091 254 LSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG 321 (382)
T ss_pred HHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 999999999999998887777666655443321 12222222222332322222222322333455555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-cc-hhHHHHHHHH
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-KA-GIFFFFGGLV 324 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~ 324 (330)
+.++.+. .+....++..++|.+.|.+.|.. ++ ..+.+.++++
T Consensus 322 ~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~ 365 (382)
T PRK10091 322 ELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLS 365 (382)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHH
Confidence 5555543 46678899999999999999964 44 4444443333
No 38
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.93 E-value=1.3e-23 Score=175.45 Aligned_cols=266 Identities=15% Similarity=0.141 Sum_probs=171.0
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHhhcccccccc----------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA--------FNIYMLIFGRLLLGVGIGFGNQ---------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~l~G~~~g~~~~---------------- 56 (330)
+++.|+++||+|||+++..+.++.+++.+.+.++ .++..+++.|+++|++.+...+
T Consensus 68 ~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 147 (399)
T PRK05122 68 RPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTG 147 (399)
T ss_pred chhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhc
Confidence 3688999999999999999999988877766543 2567899999999999987765
Q ss_pred -----------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907 57 -----------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD 113 (330)
Q Consensus 57 -----------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (330)
+.+..|||+.+.+..+..++........||+++ +++
T Consensus 148 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------------- 206 (399)
T PRK05122 148 RVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----VKG----------------- 206 (399)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCc-----------------
Confidence 445578998887766554443333222333211 000
Q ss_pred hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHH
Q 043907 114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGG 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 193 (330)
++.++++.+++. + .......+ ..........+.+.+.++.|.+ +.+ .......+
T Consensus 207 -----------------~~~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 260 (399)
T PRK05122 207 -----------------ERLPFRRVLGRV-W-PYGMGLAL----ASIGFGTIATFITLYYAARGWD--GAA-LALTLFGV 260 (399)
T ss_pred -----------------cchhHHHHHHHH-H-HHHHHHHH----HHHHHHHHHHHHHHHHHHcccc--cch-HHHHHHHH
Confidence 000111211110 0 01111111 1122334455667777666663 334 55667788
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV 273 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
+.+++.++.+++.||++||+.+..+..+..++...+... ++.+.......+.+.+.+... +.....
T Consensus 261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~G~~~~~~~-~~~~~~ 326 (399)
T PRK05122 261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMALIGAALTGFGFSLVF-PALGVE 326 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence 889999999999999999998887777766666555432 223333333444444444333 232344
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
..|..|++.|+++.|+.+....++..+++.+.+.+.+..|+ ..+++.+++++++
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 381 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLG 381 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998884 5666655555444
No 39
>PRK03699 putative transporter; Provisional
Probab=99.93 E-value=7.5e-24 Score=176.27 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=177.1
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|++.||+|||+++..+.++..++.++++++++++.+++.|+++|++.|...+
T Consensus 60 ~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 139 (394)
T PRK03699 60 FLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSF 139 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998886654
Q ss_pred ---------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 ---------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|.+.+++.++..+..++ ++.|+. ++++ .
T Consensus 140 ~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-~----------------------- 192 (394)
T PRK03699 140 FSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-P----------------------- 192 (394)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-c-----------------------
Confidence 234578999998877766555444332 222220 0000 0
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+++++ .. ++.. ++.++...+..+...........|.|.+.+ +.|+++.+.+ ...+...++..++.+
T Consensus 193 ----~~~~~---~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~ 259 (394)
T PRK03699 193 ----KADKP---VA----KEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMW 259 (394)
T ss_pred ----cccCc---cc----cccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhh-HHHHHHHHHHHHHHH
Confidence 00000 00 0111 122222333333333445567788999884 5799998888 788888899999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.++++||++||+.+.....+..+....+... ++...........+.+.+ +..+....+..|..|
T Consensus 260 ~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~- 324 (394)
T PRK03699 260 IFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------------DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK- 324 (394)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------------CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-
Confidence 99999999999998877665555443333221 122222222233332222 222333334456555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 327 (330)
+.+++..+.......+++.++|.+.+.+.|..| ...++..++++.++
T Consensus 325 ~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 325 VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV 372 (394)
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence 346677888888999999999999999999888 45555555544443
No 40
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.93 E-value=1.3e-23 Score=174.33 Aligned_cols=265 Identities=18% Similarity=0.114 Sum_probs=170.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.|...+
T Consensus 73 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~ 152 (394)
T PRK10213 73 LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGA 152 (394)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998665
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHH-hhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+.++||+.|++.++.+++..+.. ...||+|+. +++
T Consensus 153 ~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~------------------------- 204 (394)
T PRK10213 153 VSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSH------------------------- 204 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---ccc-------------------------
Confidence 5556799999998877665544433 346765420 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
...+.++.++++.. +...+..+....+......+. |.+.++.|+++.+.+ ......+++.+++.+
T Consensus 205 ---------~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~ 270 (394)
T PRK10213 205 ---------QKQNTFRLLQRPGV----MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLT-LVLLSFGIASFVGTS 270 (394)
T ss_pred ---------chhHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHH
Confidence 00112233333222 222122222222333334444 777777899988888 778888899999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||.+ |+.+..+.....+....+.... .+.+.......+.+.+++.... .....+.+..|
T Consensus 271 ~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~- 335 (394)
T PRK10213 271 LSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------SDKIVATGVAIIWGLTFALVPV-GWSTWITRSLA- 335 (394)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-
Confidence 9999999954 4443434333333322322221 2233333344444444433332 33334456666
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHH
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGL 323 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 323 (330)
+++++..+......+++..+++.+.|.+.|..|. ..+...+++
T Consensus 336 ~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 336 DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 4466777777788889999999999999998885 344443333
No 41
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.93 E-value=1.5e-24 Score=185.81 Aligned_cols=290 Identities=15% Similarity=0.115 Sum_probs=187.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++..++++++++++|++.+++.|+++|++.+...+
T Consensus 55 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 134 (485)
T TIGR00711 55 PLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLT 134 (485)
T ss_pred HhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999987765
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHH--------H-H-Hhcc
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKML--------Q-R-IRGI 111 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~--------~-~-~~~~ 111 (330)
+.+..+||+.|++.+..+++..+. .+..||+++. ++++ .|...... . . .+++
T Consensus 135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~d~~g~~l~~~~~~~~~~~~~~~~ 211 (485)
T TIGR00711 135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASEN-FDFLGLLLLSVGLGSLLYGLSEGP 211 (485)
T ss_pred HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCC-CcHHHHHHHHHHHHHHHHHHhhCC
Confidence 455689999999988776665544 4456765431 1111 22111100 0 0 0000
Q ss_pred -cc--hhHHHHH------------HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-
Q 043907 112 -SD--VKAELND------------LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT- 175 (330)
Q Consensus 112 -~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (330)
++ .+.+... ...+. ++++...+ .+.++++..... .+..+...........+.|.++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~ 285 (485)
T TIGR00711 212 ERGWFDSNEILILSITGLVAIIAFVVWEL-TDDNPLVD-LRLFKYRNFTIG----CVYMSLLGLGLYGSFYLLPLYLQQV 285 (485)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCCccC-HHHHcCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000000 00000 01111111 233433332222 222222333445556778888865
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907 176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV 255 (330)
Q Consensus 176 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
.|+++.+.+ .......++..++.++.|++.||+|||+.+..+..+..++...+.... .++...+......
T Consensus 286 ~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 355 (485)
T TIGR00711 286 LGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF---------TPDTPFLAIALPQ 355 (485)
T ss_pred cCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC---------CCCCCHHHHHHHH
Confidence 689998888 888889999999999999999999999998888777776665554211 0112222233333
Q ss_pred HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
.+.+.+.+....+... ...|..|+++|+++.|+.+....+++.+++.+.+.+.++
T Consensus 356 ~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 356 FIRGFGMGCFFMPLTT-IALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433 335778999999999999999999999999999988764
No 42
>PRK12382 putative transporter; Provisional
Probab=99.93 E-value=2e-23 Score=173.82 Aligned_cols=266 Identities=14% Similarity=0.141 Sum_probs=167.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHhhcccccccc----------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGG--------SAFNIYMLIFGRLLLGVGIGFGNQ---------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~r~l~G~~~g~~~~---------------- 56 (330)
++++|+++||+||||++..+.+...++.+... ..+|++.+++.|+++|++.+...+
T Consensus 68 ~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 147 (392)
T PRK12382 68 RGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG 147 (392)
T ss_pred hhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 36789999999999999999888777654322 136889999999999999886544
Q ss_pred -----------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907 57 -----------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD 113 (330)
Q Consensus 57 -----------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (330)
+.+..|||+.+.+..+..++........||.++ ++++
T Consensus 148 ~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------- 207 (392)
T PRK12382 148 KVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA---HAGE----------------- 207 (392)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCC---Cccc-----------------
Confidence 344568888766554443332222222233211 0000
Q ss_pred hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHH
Q 043907 114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGG 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 193 (330)
+.+.++..+.. +++... ..+ ...+......+.|.++++.++++ .+ .......+
T Consensus 208 ------------------~~~~~~~~~~~-~~~~~~-~~l----~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 260 (392)
T PRK12382 208 ------------------RPSLWSVVGLI-WKPGLG-LAL----QGVGFAVIGTFVSLYFASKGWAM--AG-FTLTAFGG 260 (392)
T ss_pred ------------------CchHHHHHHHH-HHhHHH-HHH----HHHHHhHHHHHHHHHHHhcCCch--hH-HHHHHHHH
Confidence 00111111110 011111 111 11223345566677777666653 34 45566777
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV 273 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
+.+++.++.+++.||+|+|+.+..+..+..++.+.+... ++.+.......+.+.+.+... +.....
T Consensus 261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~ 326 (392)
T PRK12382 261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------------PTAWVALAGAALTGAGCSLIF-PALGVE 326 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------------ccHHHHHHHHHHHHHHHHhHH-HHHHHH
Confidence 888999999999999999999888877777666554432 223333333344444433322 333444
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
..|.+|+++|+++.|+.+....++..++|.+.+.+.|+.|+ ..+.+.+++.+++
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 327 VVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLG 381 (392)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999885 5566655555443
No 43
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.92 E-value=2.3e-23 Score=177.25 Aligned_cols=296 Identities=16% Similarity=0.130 Sum_probs=183.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcccccccc-----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA--FNIYMLIFGRLLLGVGIGFGNQ----------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~----------------------- 56 (330)
++.|+++||+|||+++..+.++++++.+++.++ .++..+++.|+++|++.+...+
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 578999999999999999999999998887554 5688899999999999998877
Q ss_pred ----------------ccCc-cchHHHHHhhhHHHHHHHHHHh-hcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907 57 ----------------IKGG-WGWRISLAMAAAPASILTIGAI-FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL 118 (330)
Q Consensus 57 ----------------~~~~-~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (330)
+.+. .+||+.|++.++.+++..+..+ +.||+|+.. .++.++.++..
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~i------------- 237 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFEKKYI------------- 237 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHHHHHH-------------
Confidence 4455 4999999998887776655544 466777521 11011100000
Q ss_pred HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHH
Q 043907 119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTV 197 (330)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 197 (330)
++..++.+++++.+.++++.+++ +.++...+..+......+.+..|.|.+++ ..|.+..+.+ .......++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g-~~~~~~~~~~~i 312 (465)
T TIGR00894 238 NSSLQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENG-LLSSLPYLFAWL 312 (465)
T ss_pred HhhcccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhH-HHHHHHHHHHHH
Confidence 00000001111123346666544 33444555555566667778889998885 5789988888 888888999999
Q ss_pred HHHHHHHHHHHhCcchhhhH---hhHHHHHHH---HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907 198 LAIISMILADKFGRKVLFLV---GGMQMLVSQ---VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW 271 (330)
Q Consensus 198 ~~~~~g~l~d~~grr~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (330)
+.++.|+++||+++|+.... ......++. ......... ........+.+..+...+.+.. .+...
T Consensus 313 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 383 (465)
T TIGR00894 313 CSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--------LSAAFYLTIIILTLANAVSSGP-LAGVL 383 (465)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCchHHHHHHHHHHHHHhhhh-hhhhh
Confidence 99999999999865532110 001111111 111111100 0112222222233322222222 22233
Q ss_pred cccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc--c-c-hhHHHHHHHHHHhh
Q 043907 272 LVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF--K-A-GIFFFFGGLVLIMT 328 (330)
Q Consensus 272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g-~-~~~~~~~~~~~~~~ 328 (330)
....|..| +.+|++.|+.+..+.++++++|.+.+.+.+.. + | ..|.+.+++++++.
T Consensus 384 ~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~ 443 (465)
T TIGR00894 384 INSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCV 443 (465)
T ss_pred hchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHH
Confidence 34446666 48999999999999999999999999887754 3 3 45566665555543
No 44
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.8e-23 Score=172.27 Aligned_cols=290 Identities=16% Similarity=0.206 Sum_probs=202.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhcccccccc-----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF--NIYMLIFGRLLLGVGIGFGNQ----------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~----------------------- 56 (330)
++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|...+
T Consensus 91 iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~ 170 (466)
T KOG2532|consen 91 IPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILT 170 (466)
T ss_pred cCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence 4679999999999999999999999999998884 446889999999999999887
Q ss_pred ----------------ccCc-cchHHHHHhhhHHHHHHHHHHh-hcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907 57 ----------------IKGG-WGWRISLAMAAAPASILTIGAI-FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL 118 (330)
Q Consensus 57 ----------------~~~~-~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (330)
+.+. .||+..|++.++.+++..++++ +..|+|.. +.. .. ++|.
T Consensus 171 ~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~-is---------------~~El 231 (466)
T KOG2532|consen 171 AGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPN-IS---------------EKEL 231 (466)
T ss_pred HHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCC-CC---------------HHHH
Confidence 3444 8999999999998888777654 46777752 111 11 1222
Q ss_pred HHHHHhccccc---cCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHH
Q 043907 119 NDLIRASSTSK---SITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGM 194 (330)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 194 (330)
+.+++.+.+++ +.+.|+++++++ +.+++..+..+....+.+.+..|.|.|++ .+|++..+.+ +..++..+.
T Consensus 232 ~~I~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G-~~salP~l~ 306 (466)
T KOG2532|consen 232 KYIEKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG-FLSALPFLA 306 (466)
T ss_pred HHHHhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh-HHHHHHHHH
Confidence 22222222221 146789988876 56677788888888889999999999996 4799999999 999999999
Q ss_pred HHHHHHHHHHHHHHhCcc---------hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 195 GTVLAIISMILADKFGRK---------VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 195 ~~~~~~~~g~l~d~~grr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
..+..+++|.++||..+| ..-.++....+++++.+++. ++.+.+..+++..+.....+..
T Consensus 307 ~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-----------~~~~~~~a~~~l~~~~~~~g~~ 375 (466)
T KOG2532|consen 307 MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-----------SDEHRLLAVILLTIAIGLSGFN 375 (466)
T ss_pred HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----------CCCcchHHHHHHHHHHHHcccc
Confidence 999999999999998663 22233333444444444433 2222222333222222222211
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc---cc-hhHHHHHHHHHHhh
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF---KA-GIFFFFGGLVLIMT 328 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~-~~~~~~~~~~~~~~ 328 (330)
.... ..-..+. .+++-+..+|+.+....+.++++|.+.+.+.++. .| ..|++.+++.+++.
T Consensus 376 ~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~ 440 (466)
T KOG2532|consen 376 ISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGN 440 (466)
T ss_pred hhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1111 1111232 4578999999999999999999999999998421 24 56777777766654
No 45
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.92 E-value=2.2e-23 Score=174.72 Aligned_cols=276 Identities=14% Similarity=0.093 Sum_probs=173.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.+...++.++..++++++.+++.|++.|++.+....
T Consensus 72 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (408)
T PRK09874 72 PFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGG 151 (408)
T ss_pred HHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999997654322
Q ss_pred -------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 -------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 -------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+..+||+.|.+.++..++..+. .+++||+++. .++ .++ .+.
T Consensus 152 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~------------------~~~- 208 (408)
T PRK09874 152 VSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQP---VSK-KEM------------------LHM- 208 (408)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccc---ccc-hhh------------------hHH-
Confidence 445578999998887766655444 4446665321 000 000 000
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch----hhHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST----SLLLSAVVAGGMGTVL 198 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~ 198 (330)
.+..+.++++...... ................+.+.+.++.+.+..+ .+ ......+++.+++
T Consensus 209 ----------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~~~ 274 (408)
T PRK09874 209 ----------REVVTSLKNPKLVLSL---FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISG-MIASVPGVAALLS 274 (408)
T ss_pred ----------HHHHHhCcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHH
Confidence 0011112222111111 1111111122233344555555543332222 22 4445567788888
Q ss_pred HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF 278 (330)
Q Consensus 199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 278 (330)
.+..|++.||++||+.+..+.....+..+..... ++.+.......+.+.+.+.. .+.......+..
T Consensus 275 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 340 (408)
T PRK09874 275 APRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLGAADGAL-LPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhC
Confidence 9999999999999999888777665555443332 22233333333333333322 233344446778
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHhh
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMT 328 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 328 (330)
|++.||+.+++.+....++..++|.+.+.+.+..|+ ..|++.+++.+++.
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 391 (408)
T PRK09874 341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNA 391 (408)
T ss_pred CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998884 56666666555543
No 46
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.92 E-value=4e-24 Score=179.36 Aligned_cols=273 Identities=14% Similarity=0.052 Sum_probs=180.1
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcccccccc--------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS-----AFNIYMLIFGRLLLGVGIGFGNQ-------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~-------------------- 56 (330)
++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|+++|++.+...+
T Consensus 70 ~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (417)
T PRK10489 70 MVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGA 149 (417)
T ss_pred HhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 57899999999999999988887777665442 46788999999999988775443
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHH
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAE 117 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (330)
+.+..+||+.|.+.++..++..+..+.+||+++.. +++ ++ .
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~----------------~ 209 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR--EH----------------P 209 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc--cc----------------c
Confidence 33446899999888777666666666777765311 000 00 0
Q ss_pred HHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHH
Q 043907 118 LNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGT 196 (330)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 196 (330)
.+ +.++.++..++++..+........ ... ......+.|.+.++ .|.++...+ .......++.+
T Consensus 210 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ 273 (417)
T PRK10489 210 LR----------SLLAGFRFLLASPVVGGIALLGGL----LTM-ASAVRVLYPALADEVWQMGAAQIG-LLYAAVPLGAA 273 (417)
T ss_pred hH----------HHHHHHHHHHcChHHHHHHHHHHH----HHH-HHhHHHhhHHHHHhccCCChhHhH-HHHHHHHHHHH
Confidence 00 001122333333222222221111 111 23445677888876 789888888 88888899999
Q ss_pred HHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907 197 VLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE 276 (330)
Q Consensus 197 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 276 (330)
++.++.+++.||.++++.+..+.....++.+.+... ++.+.......+.+.+.+. ..+....++.|
T Consensus 274 ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 339 (417)
T PRK10489 274 LGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWILAVLCLALFGYLSAI-SSLLQYTLLQT 339 (417)
T ss_pred HHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 999999999999877777777766666555444321 2223333333333333222 22344566689
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHH
Q 043907 277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLV 324 (330)
Q Consensus 277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 324 (330)
..|++.||++.|+.+....++..+++.+.|.+.+..| ...++..+++.
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~ 388 (417)
T PRK10489 340 QTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGL 388 (417)
T ss_pred hCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999988 45555555443
No 47
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.92 E-value=5.3e-23 Score=171.57 Aligned_cols=281 Identities=15% Similarity=0.087 Sum_probs=169.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHhhcccccccc---------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGG---S-AFNIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
++.|+++||+|||+++..+..+.+++++++. . .++++.+++.|+++|++.+...+
T Consensus 66 ~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~ 145 (402)
T TIGR00897 66 WISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGW 145 (402)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHH
Confidence 6789999999999999999999998877553 3 35788899999999998876543
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
+.+..||+..++.......+..+. .++.+|.++ ++++ ++
T Consensus 146 ~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~----------------- 204 (402)
T TIGR00897 146 FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT---PQHM-QT----------------- 204 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC---cccc-cC-----------------
Confidence 233456544433322222222222 222333211 0000 00
Q ss_pred HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHH
Q 043907 117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGT 196 (330)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 196 (330)
+++.++..+.++++++++. ++...+..+...........+.|.+.++.|+++.+.+ .......++..
T Consensus 205 --------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ 271 (402)
T TIGR00897 205 --------REKFSELGKAATILFTNPN----VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWL-QIWGTFFFTNI 271 (402)
T ss_pred --------CcchhhHHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHH
Confidence 0000000112334444332 2222233333444556677889999988999988877 77778889999
Q ss_pred HHHHHHHHHHHHhCcchhhh-HhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907 197 VLAIISMILADKFGRKVLFL-VGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS 275 (330)
Q Consensus 197 ~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (330)
++.++.|+++||++||+... .+.....+..+.+...... ..++.+.........+.+.+. ..+.. ....
T Consensus 272 ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~ 341 (402)
T TIGR00897 272 VFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAVALIIAIALGIFLAG-YVPLA-AVFP 341 (402)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHH
Confidence 99999999999999988764 2333333333222221100 011222233333333333332 23332 3345
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907 276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 327 (330)
|..| ++|+++.|+.+....+++.++|.+.+.+.|..| ...+++.+++.+++
T Consensus 342 ~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~ 393 (402)
T TIGR00897 342 TLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS 393 (402)
T ss_pred hhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 6655 689999999999999999999999999999988 46677776665544
No 48
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.92 E-value=1.1e-23 Score=177.58 Aligned_cols=298 Identities=15% Similarity=0.070 Sum_probs=174.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcccccccc--------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA----FNIYMLIFGRLLLGVGIGFGNQ-------------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~-------------------- 56 (330)
+++.|+++||+|||+++..+.++.+++.+..+.. ++++.+.+.|++.|++.|...+
T Consensus 78 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~ 157 (438)
T TIGR00712 78 KFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVS 157 (438)
T ss_pred hhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHH
Confidence 3678999999999999999999999998887664 4677888999999998876544
Q ss_pred --------------------ccCccchHHHHHhhhHHHHHHH-HHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907 57 --------------------IKGGWGWRISLAMAAAPASILT-IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK 115 (330)
Q Consensus 57 --------------------~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (330)
.....+||..|++.++..++.. +..+++||+|+....++ .++. +++. +
T Consensus 158 ~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~--~ 226 (438)
T TIGR00712 158 IWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IEEY-------RNDY--P 226 (438)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--chhc-------cccc--c
Confidence 2223689999999887766644 44556788775321100 0000 0000 0
Q ss_pred HHHHHHHHhccccccCccch-HHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHH
Q 043907 116 AELNDLIRASSTSKSITQPF-KNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGG 193 (330)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 193 (330)
.+. .++.+++.+.++.. +..++++ .++...+..+......+....+.|.++++ .|+++.+.+ ....+..+
T Consensus 227 ~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~ 298 (438)
T TIGR00712 227 DDY---NEKAEQELTAKEIFMQYVLPNK----LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSS-WAYFLYEY 298 (438)
T ss_pred ccc---ccccccccchHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHH-HHHHHHHH
Confidence 000 00000000001111 1223332 22223233333334445667788998875 588888888 77888889
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV 273 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
..+++.++.|++.||+++++....+........+...... . . +..+.+.........+.+. .+........
T Consensus 299 ~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 369 (438)
T TIGR00712 299 AGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--N-----PAGNPLVDMICMIVIGFLI-YGPVMLIGLH 369 (438)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--c-----CCCchHHHHHHHHHHHHHH-ccHHHHHHHH
Confidence 9999999999999999654322223222222111111110 0 0 1112222222222221111 1111111234
Q ss_pred cccccchhhhhhhhhHHHHHHHHHH-HHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 274 PSEIFPLEIRSAGQSITVAVNFVFT-FLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 274 ~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
..|.+|++.|+++.|+.+...++++ .++|.+.|.+.|+.|+ ..+.+.++++++
T Consensus 370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~ 424 (438)
T TIGR00712 370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 424 (438)
T ss_pred HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHH
Confidence 5699999999999999998888875 6799999999998884 555555554443
No 49
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.92 E-value=6.3e-23 Score=168.64 Aligned_cols=252 Identities=23% Similarity=0.339 Sum_probs=185.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+.+..+..+..++.+...++++++.+.+.|++.|++.+...+
T Consensus 52 ~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (352)
T cd06174 52 LLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131 (352)
T ss_pred HhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHH
Confidence 6789999999999999999999999999999999999999999999999998776
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+..+||+.+.+.++..++..+...+++
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 174 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 11222344443333333222222211110
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc-CCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL-KLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
+.+....+..+...........+.|.+.++. |.++.+.+ .......++..++.++
T Consensus 175 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 230 (352)
T cd06174 175 -----------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAG-LLLSLFGLGGILGALL 230 (352)
T ss_pred -----------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 1222333334444455667777888888765 88888888 8899999999999999
Q ss_pred HHHHHHHhCcch-hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 202 SMILADKFGRKV-LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 202 ~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
.+++.||++||+ .+..+..+..++.+..... ++.+.......+.+.+.+.. .+....+..|..|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 296 (352)
T cd06174 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLGFA-FPALLTLASELAPP 296 (352)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCH
Confidence 999999999999 8888888888777766653 22334444444444444433 44556777899999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHhh
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMT 328 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 328 (330)
++|++..|+.+....++..+++.+.+.+.+..++ ..+.+.+++.+++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~ 345 (352)
T cd06174 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988874 56666666665543
No 50
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.92 E-value=4.5e-23 Score=171.66 Aligned_cols=265 Identities=17% Similarity=0.141 Sum_probs=172.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+..+..++.+..+++++++.+.+.|+++|++.+...+
T Consensus 58 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (385)
T TIGR00710 58 LLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV 137 (385)
T ss_pred HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999987765
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.+++.++..++..+. .+..||+++. +++ .++
T Consensus 138 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~--------------------- 192 (385)
T TIGR00710 138 LALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY---EAR-IQI--------------------- 192 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---ccc-CCH---------------------
Confidence 445578999998877766555444 4446776431 000 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
++...++++.++++..+.... ..............+.|.+++ +.|.++.+.+ .......++.+++.+
T Consensus 193 -------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~ 260 (385)
T TIGR00710 193 -------STYFETFLLLLKSKMFWGYAL----IYGASFGGFFAFFSGAPFVYIDIMGVSPSVFG-LLFALNIIAMIFGGF 260 (385)
T ss_pred -------HHHHHHHHHHHcCchhHHHHH----HHHHHHHHHHHHHHcChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 000112333333332222221 111222333445566677664 6788888888 888888999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||++||+.+..+.....++...+...... ...............+.+.+... +.......|..|
T Consensus 261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~- 330 (385)
T TIGR00710 261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP- 330 (385)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-
Confidence 99999999999998888777666665555443110 00111222222233333333222 333445567777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+.|+++.++.+...+.++.+.+.+.+...+..+
T Consensus 331 ~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 363 (385)
T TIGR00710 331 HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA 363 (385)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence 579999999998888877777777774444333
No 51
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.92 E-value=5.9e-23 Score=171.82 Aligned_cols=269 Identities=15% Similarity=0.099 Sum_probs=175.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.....++.+...++++++.+++.|+++|++.+...+
T Consensus 66 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 145 (406)
T PRK15402 66 WLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145 (406)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998876544
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+. ....||+++. +++ ..+ .+
T Consensus 146 ~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-----------------~~-- 202 (406)
T PRK15402 146 ALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR---VGE-KLS-----------------LK-- 202 (406)
T ss_pred HHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc---ccc-ccc-----------------HH--
Confidence 334578999998877776665544 3446776431 000 000 00
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+...++++.++++..+ ...+..............+.|.++ ++.|+++.+.+ .......++..++.+
T Consensus 203 --------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~~~~~g~~ 269 (406)
T PRK15402 203 --------ELGRDYKLVLKNRRFV----AGALALGLVSLPLLAWIALSPVILISGEQLSSYEYG-LLQVPVFGALIAGNL 269 (406)
T ss_pred --------HHHHHHHHHHcCcHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 0011233444333222 122222212222233445567665 45788888777 666667778889999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||+++|+....+.....++...+...... .....+.......+.+.+.+....+. .... ...++
T Consensus 270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~-~~~~~ 339 (406)
T PRK15402 270 TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLANAGL-YRLT-LFSSD 339 (406)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHhhhH-HHHH-hhhcc
Confidence 99999999999999888877766666655543100 11222333333344444433332222 2222 23344
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchh
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGI 316 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (330)
++||+..+..+....++..+++.+.+.+.+..++..
T Consensus 340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 340 VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 889999999999999999999999999988877443
No 52
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.91 E-value=2.7e-22 Score=166.25 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=166.7
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++.+++.+.+++++|++.+++.|+++|++.+...+
T Consensus 59 ~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (381)
T PRK03633 59 LLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV 138 (381)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999987654
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+...|+..+.. ......... ..+.++.|+
T Consensus 139 ~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~--------------------------------- 183 (381)
T PRK03633 139 YYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILP-LLFTRILNQ--------------------------------- 183 (381)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHH-HHHhcccCC---------------------------------
Confidence 1111111111111 100000000 001000000
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS 202 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (330)
+++++++.+.++.++++..+........ ..........+.|.+.++.|.++++.+ .......+..+++++..
T Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~ 255 (381)
T PRK03633 184 ---QAENHDSTSIWPMLKLRQARLGVNGCII----SGIVLGSLYGLMPLYLNHQGMSDASIG-FWMALLVSAGILGQWPI 255 (381)
T ss_pred ---CCCCCCCCCHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhh
Confidence 0000011233444444332221111111 112233444677888888888888887 77788889999999999
Q ss_pred HHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh
Q 043907 203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI 282 (330)
Q Consensus 203 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 282 (330)
+++.||+++|+.+..+.....++...+... .... ....+.+.+.. ...|.....+.|..|+++
T Consensus 256 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~---~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~ 318 (381)
T PRK03633 256 GRLADRFGRLLVLRVQVFVVILGSIAMLSQ-------------AAMA---PALFILGAAGF-TLYPVAMAWACEKVEHHE 318 (381)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-------------HHHH---HHHHHHHHHHH-hHHHHHHHHHHccCCHHH
Confidence 999999999998887776666554433210 1111 11122222211 233455565678888888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907 283 RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 283 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 327 (330)
++...+..+....+|+.++|.+.|.+.|+.+ .+.|.+.+.+.++.
T Consensus 319 ~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 319 LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 8888888888888999999999999999988 46666666555543
No 53
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.91 E-value=2.6e-23 Score=175.61 Aligned_cols=296 Identities=13% Similarity=0.150 Sum_probs=179.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHhhcccccccc------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIF-GRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~------------------------ 56 (330)
++.|+++||+|||++++.+.++..+++++++++++++.+++ .|+++|++.+...+
T Consensus 72 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~ 151 (455)
T TIGR00892 72 PISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAG 151 (455)
T ss_pred HHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 57899999999999999999999999999999999988865 57999999886533
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhc-CCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFL-PETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+.+|||+.|++.++..++..+..+++ |+.+.. ++.+ .++. +...+.++.+++ +
T Consensus 152 ~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~~----~~~~~~~~~~~~--~- 221 (455)
T TIGR00892 152 SPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK-SKSK----EGLPPDGSTKKL--S- 221 (455)
T ss_pred ccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc-cccc----ccCCCCCccccc--c-
Confidence 4455799999999887766555444443 322210 0000 0000 000000000000 0
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
.+...++..+..++ +.++++ .+.......+....+......+.|.+.++.|+++.+.+ ...+..+++.++++++
T Consensus 222 ~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~ 295 (455)
T TIGR00892 222 KKSTAEKINRFLDF-SLFTHR----GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPS 295 (455)
T ss_pred ccchhhhhhhhcch-HHhcCc----hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 00000000000011 233332 22223333333334445556677888888899988888 8888899999999999
Q ss_pred HHHHHHHh--CcchhhhHhh--HHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907 202 SMILADKF--GRKVLFLVGG--MQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI 277 (330)
Q Consensus 202 ~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 277 (330)
.+++.||. ++|+....+. ...+++.+..... ++.+...+...+.+.+.+.. .+....++.|.
T Consensus 296 ~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------------~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~ 361 (455)
T TIGR00892 296 CGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-------------GDYTGLVIYCIFFGLSFGSV-GALLFEVLMDL 361 (455)
T ss_pred HHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-------------chHHHHHHHHHHHHHHhchH-HHHHHHHHHHH
Confidence 99999973 3333333222 2222222222111 23333344444444444433 33445566799
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHHHHHh
Q 043907 278 FPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGLVLIM 327 (330)
Q Consensus 278 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~ 327 (330)
+|+++++++.|+.+....+++.++|.+.+.+.+..+ + ..|++.+++.+++
T Consensus 362 ~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 362 VGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred hhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 999999999999999999999999999999999875 4 5566655554443
No 54
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.91 E-value=6.5e-23 Score=174.05 Aligned_cols=280 Identities=14% Similarity=0.055 Sum_probs=163.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++++++.+++++++++..+++.|+++|++.+...+
T Consensus 89 ~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~ 168 (476)
T PLN00028 89 LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWG 168 (476)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998875332
Q ss_pred -------------c----cC-----ccchHHHHHhhhHHHHHHHHHHhhcC-CCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907 57 -------------I----KG-----GWGWRISLAMAAAPASILTIGAIFLP-ETPNSKIQRSDDHQKAQKMLQRIRGISD 113 (330)
Q Consensus 57 -------------~----~~-----~~~wr~~~~~~~~~~~~~~~~~~~~p-esp~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (330)
+ .+ ..|||+.|++.+++.++..+..++++ +.|+ ++ .++.++
T Consensus 169 ~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~-~~~~~~---------- 232 (476)
T PLN00028 169 NLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GN-YRELKK---------- 232 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----Cc-hhhHHh----------
Confidence 0 01 24899999998887776655545544 3332 00 000000
Q ss_pred hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHH
Q 043907 114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAG 192 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 192 (330)
+...++++....+++.++++.. + ...+..+...........+.|.++ ++.|++..+++ ...+...
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~ 298 (476)
T PLN00028 233 ---------SGTMPKDSFSKVLRYGVTNYRT---W-ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG-AIAASFG 298 (476)
T ss_pred ---------cCccccccHHHHHHHHHcCchh---H-HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH-HHHHHHH
Confidence 0000000001122333322221 1 122222222233344556677776 45699988888 8888999
Q ss_pred HHHHHHHHHHHHHHHHhCcch-------hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 193 GMGTVLAIISMILADKFGRKV-------LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
++..++.++.|+++||++||+ .......+.++..+.+.. . .+.........++..+....
T Consensus 299 ~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~------------~-~~~~~~~~~~~l~~~~~~~~ 365 (476)
T PLN00028 299 LMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR------------A-NSLGAAIVVMILFSIFVQAA 365 (476)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc------------c-chHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998762 111111111111111111 1 12222222222222222222
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
.+ ..+.+..|..| +.||++.|+.+..+.+++.+++.+.+ ..+..++ ..|++.+++.+++
T Consensus 366 ~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~ 425 (476)
T PLN00028 366 CG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIAC 425 (476)
T ss_pred hh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHH
Confidence 22 23444456544 78999999998888888888887654 1122233 4565555554444
No 55
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.91 E-value=1.5e-23 Score=172.31 Aligned_cols=260 Identities=22% Similarity=0.348 Sum_probs=172.5
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|+++|++.+...+
T Consensus 50 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 129 (352)
T PF07690_consen 50 PFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAG 129 (352)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccch
Confidence 5789999999999999999999999977777778888999999999999988776
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+. ..+++|+|+...++++ .++ +
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~-~~~----------------~---- 188 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP-KES----------------E---- 188 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS-TTT----------------T----
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc-ccc----------------c----
Confidence 556789999999988887776654 3455555432111111 000 0
Q ss_pred HHhccccccCcc-chHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHH-HHhcCCC-CchhhHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQ-PFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVL-FRTLKLG-ESTSLLLSAVVAGGMGTVL 198 (330)
Q Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~ 198 (330)
++++++.. .+++.++++..+ ......+...........+.|.+ .+..|.+ ..+.+ .......+...++
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 189 ----SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAG-LLFSIFGIVGIIG 259 (352)
T ss_dssp ------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHH-HHHHHHHHHHHHH
T ss_pred ----cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHH-HHHHHHHHHHHHH
Confidence 00011111 244444443332 12222222223345577788887 4677888 56777 7788889999999
Q ss_pred HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF 278 (330)
Q Consensus 199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 278 (330)
.++.+++.||+++|+..........+..+.+..... ..+.........+.+.+.+.. .+....+..|..
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 328 (352)
T PF07690_consen 260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SSSPVWLIIALFLIGFGFGIV-FPILFSLIQELV 328 (352)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 999999999999988777766666665555443321 112233333334444443333 345566778999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHH
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTA 302 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~ 302 (330)
|+++||++.|+.+....+++.++|
T Consensus 329 ~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 329 PPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999887
No 56
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.90 E-value=6.3e-22 Score=163.98 Aligned_cols=274 Identities=14% Similarity=0.102 Sum_probs=182.5
Q ss_pred cchhhhhhhhchhHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907 2 LIASSVTRAIGRKVSI----LIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
+++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|.++|.+.+...+
T Consensus 57 ~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~ 134 (382)
T TIGR00902 57 LFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVR 134 (382)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHH
Confidence 5789999999985433 222222222 2444678999999999999988776555
Q ss_pred ----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907 57 ----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120 (330)
Q Consensus 57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (330)
+.+.+|||..|.+.....++.. ..+.++|+++ ++++ .+
T Consensus 135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~---~~~~-~~--------------------- 188 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIP---PKDA-IP--------------------- 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCC---CCcc-cc---------------------
Confidence 5556799999887655433322 2333444321 0000 00
Q ss_pred HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
++++++..+.++.+|++..+ ...+..+...........+.|.+.++.|.++.+.+ .......+..+++..
T Consensus 189 -----~~~~~~~~~~~~~l~~~~~~----~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g-~l~~~~~~~~i~~~~ 258 (382)
T TIGR00902 189 -----EDESQGDSAFIALLKNPMNL----RFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATG-LLWGIGVLAEIIIFA 258 (382)
T ss_pred -----ccccccchhHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHH
Confidence 00001122345555443222 22222233334455666788888888999999998 788889999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||+|+|+.+..+.+...+....+... ++.+.......+-+..++....+ ...++.+. |+
T Consensus 259 ~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~ 323 (382)
T TIGR00902 259 FSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PG 323 (382)
T ss_pred HhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CH
Confidence 99999999999999998888888887766543 44454555555555555554443 45566777 99
Q ss_pred hhhhhhhhHHHH-HHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHhh
Q 043907 281 EIRSAGQSITVA-VNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 328 (330)
Q Consensus 281 ~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 328 (330)
++|++++++.+. ...++..+++.+.|.+.|+.|...|+..+++.+++.
T Consensus 324 ~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 324 SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAF 372 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999864 566889999999999999998777777777666543
No 57
>PRK10504 putative transporter; Provisional
Probab=99.90 E-value=7e-22 Score=168.55 Aligned_cols=290 Identities=13% Similarity=0.166 Sum_probs=184.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+++..+..+.+++.+.++++++++.+++.|+++|++.+...+
T Consensus 63 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (471)
T PRK10504 63 PASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLP 142 (471)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999988765
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHH-hhcCCCchhhhccCCcHHHHHHHHHH---------Hhccc
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSKIQRSDDHQKAQKMLQR---------IRGIS 112 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~a~~~~~~---------~~~~~ 112 (330)
+.+..+||+.|.+......+..+.. ...|+.+. ++.+ .|........ ..+.+
T Consensus 143 ~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r-~~~~~~~~~~~~~~~~~~~~~~~~ 218 (471)
T PRK10504 143 GQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRR-FDLSGFLLLAVGMATLTLALDGSK 218 (471)
T ss_pred HHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCC-CChHHHHHHHHHHHHHHHHHhcCC
Confidence 4456799999998876665554443 33555432 1122 2221111000 00000
Q ss_pred c---hhHHHH------------HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hc
Q 043907 113 D---VKAELN------------DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TL 176 (330)
Q Consensus 113 ~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 176 (330)
. ...... ...++ ++.+++..+. ++++++..... ....+....+......+.|++++ ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~l~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (471)
T PRK10504 219 GLGLSPLAIAGLVAVGVVALLLYLLHA-RNNNRALFSL-KLFRTRTFSLG----LAGSFAGRIGSGMLPFMTPVFLQIGL 292 (471)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHH-hcCCCCccCH-HHhcccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000000 00000 0111111222 34444333322 22222222334555667788887 47
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907 177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC 256 (330)
Q Consensus 177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
|.++.+.+ +......+...++.++.+++.||+|||+.+..+..+..+....+.... .....+.......
T Consensus 293 g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 361 (471)
T PRK10504 293 GFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLF 361 (471)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHH
Confidence 88888888 788888888888889999999999999999888877776655554321 1121222222222
Q ss_pred HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
..+.+.+....+ ...+..+..|++.++++.++.++...++..+++.+.+.+.+..+
T Consensus 362 ~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 362 LQGMVNSTRFSS-MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHH-HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333333333 34555688999999999999999999999999999999887765
No 58
>PRK11043 putative transporter; Provisional
Probab=99.90 E-value=6e-22 Score=165.52 Aligned_cols=262 Identities=16% Similarity=0.133 Sum_probs=172.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+.+..+..+..++.+.+.++++++.+++.|+++|++.+...+
T Consensus 59 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (401)
T PRK11043 59 LLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPL 138 (401)
T ss_pred HhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998765443
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+..+||+.|++.++..++..+..++++|+++ ++++ ++
T Consensus 139 ~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~---------------------- 191 (401)
T PRK11043 139 VALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK---ARKQ--SQ---------------------- 191 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC---cccc--ch----------------------
Confidence 334579999998888777666655555665532 0000 00
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS 202 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (330)
++.++++.++++..+....... ...........+.|.+.++.|+++.+.+ .......++..++..+.
T Consensus 192 --------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~ 258 (401)
T PRK11043 192 --------DALTFKQLLKSKTYLGNVLIFA----ACSAAFFAWLTGSPFILEQMGYSPADIG-LSYVPQTIAFLVGGYGC 258 (401)
T ss_pred --------HHHHHHHHHcChhHHHHHHHHH----HHHHHHHHHHHHhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence 0112334443322221111111 1112234455677888888899888888 77777788889999999
Q ss_pred HHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh
Q 043907 203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI 282 (330)
Q Consensus 203 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 282 (330)
+++.||+++|+..........++.+.+...... .....+.........+.+.+... +.......|..| ++
T Consensus 259 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 328 (401)
T PRK11043 259 RAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QA 328 (401)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-cc
Confidence 999999999987666555555444433222110 11222222333333333333332 333334346666 57
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 283 RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 283 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
|+++.|+.+..+..++..++.+.+.+.+...
T Consensus 329 ~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 329 TGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 9999999999999999999999998877543
No 59
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.90 E-value=1.1e-21 Score=161.90 Aligned_cols=273 Identities=15% Similarity=0.099 Sum_probs=173.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhcccccccc--------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA-----FNIYMLIFGRLLLGVGIGFGNQ-------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~-------------------- 56 (330)
++.|++.||+|+|+++.++.+++++.++..+++ ++++.+++.|++.|++ |...+
T Consensus 88 ip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~G 166 (462)
T PRK15034 88 VPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALG 166 (462)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHH
Confidence 356999999999999999999999999999987 8999999999999998 44444
Q ss_pred --------------------c-----c------------CccchHHHHHhhhHHHHHHHHHHhh-cCCCchhhhccCCcH
Q 043907 57 --------------------I-----K------------GGWGWRISLAMAAAPASILTIGAIF-LPETPNSKIQRSDDH 98 (330)
Q Consensus 57 --------------------~-----~------------~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~ 98 (330)
+ . +..+||...++..++.++..+..++ .+|.|.
T Consensus 167 i~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------- 237 (462)
T PRK15034 167 INGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------- 237 (462)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------
Confidence 0 0 1223555554444444443333333 222110
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCC
Q 043907 99 QKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKL 178 (330)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 178 (330)
++...++..+.+|++.. +.+.+..+..+.++..+..+.|.+.++ .+
T Consensus 238 -----------------------------~~~~~~~~~~vlk~~~~----Wllslly~~tFG~fvg~s~~lp~~~~~-~~ 283 (462)
T PRK15034 238 -----------------------------SRASIADQLPVLQRLHL----WLLSLLYLATFGSFIGFSAGFAMLAKT-QF 283 (462)
T ss_pred -----------------------------cccCHHHHHHHhCCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 00001123334444332 334444455566677778888888865 34
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHh
Q 043907 179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258 (330)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (330)
+..... .......+...+.++++|+++||+|+|+++..+...+.++......... . .+..+.+.........
T Consensus 284 ~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp----~---~~~~~~~~~~~~~~~l 355 (462)
T PRK15034 284 PDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP----G---TGSGNFIAFYAVFMGL 355 (462)
T ss_pred ChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----c---ccccHHHHHHHHHHHH
Confidence 433333 3345567888899999999999999999999888777766654433320 0 0112333333333333
Q ss_pred hcccccccccccccccccccch---------------------hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc--ch
Q 043907 259 SSGYCYSWGPLAWLVPSEIFPL---------------------EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK--AG 315 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~ 315 (330)
....+.+.+++ +-++.+.+|+ ++-|.+.|+....+.+|+++.|.+.+...+..| ..
T Consensus 356 ~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~ 434 (462)
T PRK15034 356 FLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVG 434 (462)
T ss_pred HHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHH
Confidence 34445555433 4444666664 256788999999999999999999999988877 24
Q ss_pred hHHHHHHHHHHh
Q 043907 316 IFFFFGGLVLIM 327 (330)
Q Consensus 316 ~~~~~~~~~~~~ 327 (330)
.++.+.+..+++
T Consensus 435 ~~~~~~~~~~~~ 446 (462)
T PRK15034 435 AMKVFLIFYIVC 446 (462)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 60
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.90 E-value=7.2e-22 Score=162.34 Aligned_cols=256 Identities=16% Similarity=0.103 Sum_probs=164.5
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|++.|++.+...+
T Consensus 53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (355)
T TIGR00896 53 PLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMAL 131 (355)
T ss_pred HhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHH
Confidence 578999999999999999999988888877 778999999999999999887544
Q ss_pred -------------ccCcc--chHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 -------------IKGGW--GWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 -------------~~~~~--~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+.. +||+.|...++..++.. ..++||.++ +++
T Consensus 132 ~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~----~~~------------------------- 180 (355)
T TIGR00896 132 MGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRR----RVA------------------------- 180 (355)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhcc----ccC-------------------------
Confidence 22222 38877766554333222 223344321 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
++++..+.+.++.++++. .+...+........+.....+.|.++++.|.+..+.+ ...+...++.++++++
T Consensus 181 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~ 251 (355)
T TIGR00896 181 ----ANQTTTRLTPVRIWRSPL----AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAG-SLLALMQLAQAASALL 251 (355)
T ss_pred ----CCCCCCCCCCchhhcCHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHh
Confidence 000000112233333322 2222222222334445666788999988899988888 8888999999999999
Q ss_pred HHHHHHHh-CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc-cccc
Q 043907 202 SMILADKF-GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS-EIFP 279 (330)
Q Consensus 202 ~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p 279 (330)
.|++.||+ +||+....+..+..++.+.+.+. + ..... . ...+.+.+.+... +....... +..+
T Consensus 252 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~-~-~~~l~g~~~g~~~-~~~~~~~~~~~~~ 316 (355)
T TIGR00896 252 IPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-----------P-MHGLW-A-WALVLGLGQGGAF-PLALTLIGLRSRQ 316 (355)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-----------h-hhHHH-H-HHHHHHHhhhhHh-HHHHHHHHHhccC
Confidence 99999999 45666666666666665555442 1 11111 1 2233333433222 23223333 4445
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
++.+++..++.+...+++..++|.+.|.+.|+.|
T Consensus 317 ~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 317 AAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778999999999999999999999999999887
No 61
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.89 E-value=1.2e-21 Score=162.53 Aligned_cols=257 Identities=16% Similarity=0.152 Sum_probs=159.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+++..+.++.+++.+.+.++++++.+.+.|+++|++.+...+
T Consensus 44 ~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (377)
T PRK11102 44 LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLV 123 (377)
T ss_pred HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999887654
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+. .++.||+++. +++ .+.
T Consensus 124 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~--------------------- 178 (377)
T PRK11102 124 MTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERR-QPF--------------------- 178 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-CCC---------------------
Confidence 344568999998877766665444 4557776421 000 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+.++...++++.++++.. . ...+.......+......+.|.++ +..|+++.+.+ .......+..+++.+
T Consensus 179 -----~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~ 248 (377)
T PRK11102 179 -----HLRTTIRNFASLFRHKRV---L-GYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFG-YYFALNIVFLFVMTI 248 (377)
T ss_pred -----ChHHHHHHHHHHHcChHH---H-HHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 000001123333433221 1 122222222233344445556555 55789988888 888889999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||+|||+.+..+.....+..+.+...... +...+...........+.+.. .+.......|..|
T Consensus 249 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 317 (377)
T PRK11102 249 INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---------DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP- 317 (377)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-
Confidence 99999999999999888776654443333222100 112222222222222222222 2222334467666
Q ss_pred hhhhhhhhHHHHHHH-HHHHHHHHh
Q 043907 281 EIRSAGQSITVAVNF-VFTFLTAQT 304 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~-~~~~~~~~~ 304 (330)
+.++++.++.+.... ++..+++.+
T Consensus 318 ~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 318 HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 789999998877654 334444443
No 62
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.89 E-value=1.9e-21 Score=162.13 Aligned_cols=281 Identities=14% Similarity=0.092 Sum_probs=164.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHh---hh-----hhHHHHHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGG---SA-----FNIYMLIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l~G~~~g~~~~----------------- 56 (330)
++.|+++||+|||+.++.+....+++..... +. +....+++.|++.|++.+...+
T Consensus 56 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (396)
T TIGR00882 56 PLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEY 135 (396)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhccccc
Confidence 5789999999999999887776655443221 11 1234456678888877665544
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHHHhh-cCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIGAIF-LPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
.....+||.+|++.++..++..+..+. .||+|+ +++.++
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~------------- 194 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPS--------SATVAN------------- 194 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCch--------hhhhhc-------------
Confidence 222368999999888777665555444 444332 100000
Q ss_pred HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc----CCCCchhhHHHHHHHH
Q 043907 117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL----KLGESTSLLLSAVVAG 192 (330)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~ 192 (330)
. .+.++++++.++.++.++++..+.... ..+.....+.....+.+.+.++. +.+....+ ...+...
T Consensus 195 ----~-~~~~~~~~~~~~~~~~l~~~~~~~~~l----~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~ 264 (396)
T TIGR00882 195 ----A-LGANASAFSLKLALELFRQRKFWMFVL----YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFG-YVTTMGE 264 (396)
T ss_pred ----c-cccccCCCCHHHHHHHHcCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH-HHHHHHH
Confidence 0 000011111223455555433222221 11111222233333455555432 34444555 6777788
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccc
Q 043907 193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWL 272 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (330)
+...++....+++.||+|||+.+..+..+.++........ .+.+.......+.+.+..... .....
T Consensus 265 i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~ 330 (396)
T TIGR00882 265 LLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------------TTALEVVILKMLHAFEVPFLL-VGCFK 330 (396)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------------CChHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 8889999999999999999999888877777655544332 223333333333332222111 12233
Q ss_pred ccccccchhhhhhhhhH-HHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 273 VPSEIFPLEIRSAGQSI-TVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 273 ~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
+..|..|++.+++..+. .+....+++.+++.+.|.+.|..|+ ..|.+.+++.++.
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44566778888887766 5678899999999999999999884 6666666655443
No 63
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.89 E-value=1.3e-21 Score=166.44 Aligned_cols=281 Identities=12% Similarity=0.048 Sum_probs=175.9
Q ss_pred cchhhhhhhh-----chhHH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------
Q 043907 2 LIASSVTRAI-----GRKVS-ILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ---------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~-----Grk~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~---------------- 56 (330)
+++|+++||+ ||||. +..+.+..+++....++. ++++.+.+.|++.|++.+...+
T Consensus 63 ~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg 142 (491)
T PRK11010 63 FLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG 142 (491)
T ss_pred HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 5789999999 99986 667777777777777665 4688899999999988876654
Q ss_pred -----------------------ccC-ccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc
Q 043907 57 -----------------------IKG-GWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS 112 (330)
Q Consensus 57 -----------------------~~~-~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~ 112 (330)
+.+ ..|||..|++.++..++..+..++.||+++.. +++ .+.
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~--~~~-~~~------------ 207 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI--PVP-KTL------------ 207 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc--ccc-cch------------
Confidence 334 46999999998877776666666678865310 000 000
Q ss_pred chhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHH-HH
Q 043907 113 DVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSA-VV 190 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~ 190 (330)
+++...++++.++++..+.......+. ..+......+.+.++ ++.|++..+.+ ... ..
T Consensus 208 ---------------~~~~~~~l~~~~~~~~~~~~ll~~~l~----~~~~~~~~~~~~~~l~~~~G~s~~~~g-~~~~~~ 267 (491)
T PRK11010 208 ---------------EQAVVAPLRDFFGRNNAWLILLLIVLY----KLGDAFAMSLTTTFLIRGVGFDAGEVG-LVNKTL 267 (491)
T ss_pred ---------------hhhHHHHHHHHHcCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHH
Confidence 000012345555443333222222111 122233334445554 56899999888 665 45
Q ss_pred HHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccc
Q 043907 191 AGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLA 270 (330)
Q Consensus 191 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (330)
..++.+++.++.|+++||+|+|+.+..+.....+..+.+..... ..++.+.......+.....+.+.. ..
T Consensus 268 g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~~~~~~~l~~~~~l~~~~~g~~~~-~~ 337 (491)
T PRK11010 268 GLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------TDKNLYSMGAAVFFENLCGGMGTA-AF 337 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHHHHHHHHHHHHHHHHHHH-HH
Confidence 56799999999999999999998777665555544433322110 011222222222221112222222 22
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccch-hHHHHHHHHHHh
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG-IFFFFGGLVLIM 327 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 327 (330)
..+..+..|++.+++..|+.+....++..+++.+.|.+.|..|+. .|.+.+++++.+
T Consensus 338 ~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~ 395 (491)
T PRK11010 338 VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPG 395 (491)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 455568888889999999999999999999999999999998864 444445444443
No 64
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.89 E-value=2.8e-21 Score=161.42 Aligned_cols=279 Identities=11% Similarity=0.053 Sum_probs=172.6
Q ss_pred cchhhhhhhhch-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 2 LIASSVTRAIGR-KVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++|.++||+|| |+++.++.++.++......+.++++.+.+.|++.|++.+...+
T Consensus 56 ~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 135 (418)
T TIGR00889 56 ILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPI 135 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCe
Confidence 578999999965 8888989999988888888889999999999998886543311
Q ss_pred -----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907 57 -----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN 119 (330)
Q Consensus 57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (330)
+.....|+ +|++.++..++..+..+++||+|+- +++ .++
T Consensus 136 r~~G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~-~~~------------------- 191 (418)
T TIGR00889 136 RVMGTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPVA---KST-AKM------------------- 191 (418)
T ss_pred eeehhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCC---ccc-ccc-------------------
Confidence 21111233 3555555555544455668887631 111 000
Q ss_pred HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCC--------chhhHHHHHHH
Q 043907 120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGE--------STSLLLSAVVA 191 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~ 191 (330)
+.++..+.+.++.+|++.....+...++. .........+.+.+.++.|.++ ...+ ...+..
T Consensus 192 ------~~~~~~~~~~~~~~k~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~ 260 (418)
T TIGR00889 192 ------SIKVMLGLDAFILFKNKRMAIFFFFSMLL----GAPLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLS 260 (418)
T ss_pred ------CHHHHhhhhHHHHhcCCCeeeHHHHHHHH----HhHHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHH
Confidence 00000011233444443332222222221 1222334455566676666543 3446 777888
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHhhccccccccccc
Q 043907 192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEG-YAYLILVLVCLCSSGYCYSWGPLA 270 (330)
Q Consensus 192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 270 (330)
.+..+++.++.+++.||+|||+.+..+.+...+....+.... +.. ..+.......+.+.+.+.. .+..
T Consensus 261 ~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~----------~~~~~~~~l~l~~~l~g~~~~~~-~~~~ 329 (418)
T TIGR00889 261 QFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD----------PEYFGYALLFLSMIVYGCAFDFF-NISG 329 (418)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC----------cchhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 889999999999999999999999988887777655544320 001 1222233333343333322 3344
Q ss_pred ccccccccchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc------c-hhHHHHHHHHHH
Q 043907 271 WLVPSEIFPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK------A-GIFFFFGGLVLI 326 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g------~-~~~~~~~~~~~~ 326 (330)
..++.|.+|++.|++++|+.+ ....++..++|.+.|.+.|+.| | ..|.+.+++.++
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i 393 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAI 393 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 556689999999999999997 5677899999999999999854 3 345555554444
No 65
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.89 E-value=2e-21 Score=161.56 Aligned_cols=268 Identities=14% Similarity=0.123 Sum_probs=158.5
Q ss_pred chhhhhhhhchhHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 3 IASSVTRAIGRKVSI-LIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 3 ~~g~l~d~~Grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+.|..+||+||||.+ ..+.+..+++..+.+++++++.+++.+.+.|...+...+
T Consensus 70 ~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (393)
T PRK15011 70 FLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLR 149 (393)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 344459999999875 456666677788888899998876655444333333332
Q ss_pred ----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907 57 ----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN 119 (330)
Q Consensus 57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (330)
+.+..|||..|++.++..++..+. .+++||+|+- +++ .+
T Consensus 150 ~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-------------------- 205 (393)
T PRK15011 150 AQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL-AT-------------------- 205 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc-cc--------------------
Confidence 445679999999888766665544 4457876530 000 00
Q ss_pred HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHH
Q 043907 120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVL 198 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 198 (330)
++.+ ..+ ++ ++..+...... ............+.|.+. ++.|+++.+.+ .......+..+++
T Consensus 206 ------~~~~----~~~----~~-~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~ 268 (393)
T PRK15011 206 ------GTLE----APR----RN-RRDTLLLFVIC-TLMWGTNSLYIINMPLFIINELHLPEKLAG-VMMGTAAGLEIPT 268 (393)
T ss_pred ------cccc----ccc----cc-cccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHH
Confidence 0000 000 00 01111111111 111222344455677776 45788888877 6666767778889
Q ss_pred HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF 278 (330)
Q Consensus 199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 278 (330)
.++.|+++||++||+.+..+.....+........ ++.+..+....+.....+...+ ....+..|..
T Consensus 269 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~ 334 (393)
T PRK15011 269 MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------------HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLM 334 (393)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 9999999999999998776654444332222111 2222222222222222222212 2234457888
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
|+ +|+++.++.+...+++..+++.+.+.+.|..|+ ..+++.++++++
T Consensus 335 p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~ 382 (393)
T PRK15011 335 PG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA 382 (393)
T ss_pred CC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 85 599999999998999999999999999998885 444444444443
No 66
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=154.39 Aligned_cols=280 Identities=16% Similarity=0.173 Sum_probs=202.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNI---YMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
++.|.+.||+|.|++..++.++..+.++..+++.++ +++++.+++.|++.+....
T Consensus 67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g 146 (417)
T COG2223 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG 146 (417)
T ss_pred HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc
Confidence 357899999999999999999999999999998554 5999999999999987765
Q ss_pred ---------------ccCccc---hHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHH
Q 043907 57 ---------------IKGGWG---WRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAE 117 (330)
Q Consensus 57 ---------------~~~~~~---wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (330)
+....+ ||....+..+..++..+. ++...|.|......++
T Consensus 147 ~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~--------------------- 205 (417)
T COG2223 147 AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP--------------------- 205 (417)
T ss_pred cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc---------------------
Confidence 333345 888777777666665544 4446555532110000
Q ss_pred HHHHHHhccccccCc-cchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHH
Q 043907 118 LNDLIRASSTSKSIT-QPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMG 195 (330)
Q Consensus 118 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 195 (330)
.. .+++...+++ ..+.+.+.++..+.++..+..++|.+++ ++|.++.+++ .........+
T Consensus 206 -------------~~~~~~~~v~~~~----~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag-~~a~~f~~~g 267 (417)
T COG2223 206 -------------QLPAQLKAVFSNK----DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAG-LIAFLFPLIG 267 (417)
T ss_pred -------------cchhHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHH
Confidence 01 2344444333 3344555666667778889999999885 6899999988 8888889999
Q ss_pred HHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907 196 TVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS 275 (330)
Q Consensus 196 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (330)
.+.++++|+++||+|.++........+.++...+..... ......+...............+.+.+.+ +-++.
T Consensus 268 ~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip 340 (417)
T COG2223 268 ALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT------GFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIP 340 (417)
T ss_pred HHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc------ccccCcchHHHHHHHHHHHHHhccCcchh-eeech
Confidence 999999999999999999999888888888777765420 00011333444444444444555565544 55667
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc--chhHHHHHHHHHHhh
Q 043907 276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK--AGIFFFFGGLVLIMT 328 (330)
Q Consensus 276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 328 (330)
.++|. +-|.+.|+..+.+.+|++..|...+...+..| ...|+++..+.+++.
T Consensus 341 ~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~ 394 (417)
T COG2223 341 VIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVAL 394 (417)
T ss_pred HHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 77775 67889999999999999999999999999998 356777766666554
No 67
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.89 E-value=2.5e-21 Score=161.35 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=161.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+.+..+.++..++.+.+..+++++.+++.|+++|++.+...+
T Consensus 56 ~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 135 (392)
T PRK10473 56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI 135 (392)
T ss_pred HhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999887554
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+. .+++||+++. +++ .++
T Consensus 136 ~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-~~~--------------------- 190 (392)
T PRK10473 136 TCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP-AAS--------------------- 190 (392)
T ss_pred HHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC-Ccc---------------------
Confidence 345578999998887766555444 4557776421 000 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+..+..++.++++..........+.. ........+.|.+. ++.|+++.+.+ .......++.+++.+
T Consensus 191 --------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~ 257 (392)
T PRK10473 191 --------SKPRENSESLLNRFFLSRLVITTLSV----TVILTFVNTSPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSF 257 (392)
T ss_pred --------chHHHHHHHHhCHHHHHHHHHHHHHH----HHHHHHHHhCHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 00001112222221111111111111 11223334456555 56788888877 788888999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||+|||+.+..+.....++.+.+... ...+...........+.+.+.... ...+..|.
T Consensus 258 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~ 321 (392)
T PRK10473 258 STPFALGIFKPRTLMLTSQVLFLAAGITLALS-------------PSHAVSLFGITLICAGFSVGFGVA---MSQALGPF 321 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhHHH---HHHHhccC
Confidence 99999999999999888887777666655543 111222222222223333332221 22344454
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA 314 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 314 (330)
+.|+ |.......++..+++.+.+.+.+..|+
T Consensus 322 ~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 322 SLRA---GVASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred cccc---cHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4443 444455566777778888888877774
No 68
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.89 E-value=1.7e-21 Score=162.05 Aligned_cols=256 Identities=14% Similarity=0.092 Sum_probs=164.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+..+..++.+.+.++++++.+++.|+++|++.+...+
T Consensus 64 ~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (400)
T PRK11646 64 IFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQ 143 (400)
T ss_pred hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998876554
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+. .++||+.|++.++..++..+. .++.||.+. +++ .+
T Consensus 144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~-~~---------------------- 195 (400)
T PRK11646 144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STV-RT---------------------- 195 (400)
T ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----ccc-ch----------------------
Confidence 33 579999999887765554433 344554211 000 00
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
+.+.++++.++++....... ..+...........+.|.+.++.+.++.+.+ .......+....+...
T Consensus 196 --------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~ 262 (400)
T PRK11646 196 --------PVREGMTRVLRDKRFVTYVL----TLTGYYMLAVQVMLMLPIMVNDIAGSPSAVK-WMYAIEACLSLTLLYP 262 (400)
T ss_pred --------hhHHHHHHHHcCchHHHHHH----HHHHHHHHHHHHHHhhhhhHHhhcCCchHHH-HHHHHHHHHHHHHHHH
Confidence 00112334443322221111 1111111122234567888877666666666 6666666666655555
Q ss_pred HHHHHH-HhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 202 SMILAD-KFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 202 ~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
.++..| |.+.++.+..+..+..++...+... ++.+........+..+.+. ..|....++.|..|+
T Consensus 263 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~ 328 (400)
T PRK11646 263 IARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQQLFTLICLFYIGSII-AEPARETLSASLADA 328 (400)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCc
Confidence 566655 4565666666666666655544432 2222232333333333332 223445666799999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
++||++.|+.+....++..++|.+.|.+.|+.
T Consensus 329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred ccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999999999999875
No 69
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.8e-23 Score=163.76 Aligned_cols=276 Identities=13% Similarity=0.171 Sum_probs=165.9
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+|++|+++|||+||+++.+|..+|.++.+.++++..+|++.++|.+.|+|.+...+
T Consensus 85 sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~ 164 (493)
T KOG1330|consen 85 SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF 164 (493)
T ss_pred HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence 47899999999999999999999999999999999999999999999999999888
Q ss_pred ---------------ccCcc-chHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907 57 ---------------IKGGW-GWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN 119 (330)
Q Consensus 57 ---------------~~~~~-~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (330)
+.+.. .|||.|...++++++..++ .++.+|++|- .+ ||.+
T Consensus 165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg----a~--~~~~----------------- 221 (493)
T KOG1330|consen 165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG----AR--DEVD----------------- 221 (493)
T ss_pred hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc----cc--cccc-----------------
Confidence 33333 3999999999988887766 4556666431 11 1100
Q ss_pred HHHHhccccccCccchHHhc---ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH----HhcCCCCchhhHHHHHHHH
Q 043907 120 DLIRASSTSKSITQPFKNII---QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF----RTLKLGESTSLLLSAVVAG 192 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ 192 (330)
.+.+..++....++|+. +.+......+...... .....+..+.|.+. +-.|.+.++.. +...+..
T Consensus 222 ---~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~----fv~Gs~sww~p~~~~~~~~~~~~~~~~~~-ifg~vt~ 293 (493)
T KOG1330|consen 222 ---GENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQ----FVIGSLSWWAPAFIYYSYELIGFDHNATL-IFGGVTC 293 (493)
T ss_pred ---cCCcCCCCccchHHHHHHHHccCceeeehHHHHHHH----HhccccchhhhhHHHHHHHHhCCccccch-hhhhHHH
Confidence 00011112222333332 2222221122222222 22233444444443 33466666666 7888899
Q ss_pred HHHHHHHHHHHHHHHHhCcc----hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccc
Q 043907 193 GMGTVLAIISMILADKFGRK----VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGP 268 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (330)
.++.+|.+++|.++||+.|+ ..........+.+............. ....+.+..++...+.......++++
T Consensus 294 ~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~----~~~~s~~~~~il~~~g~~~~~~~~a~ 369 (493)
T KOG1330|consen 294 AGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA----FTSSSMIFGLILFLVGETISWFNWAT 369 (493)
T ss_pred hhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999995432 11122222221111111100000000 01233333333333332233334444
Q ss_pred ccccccccccchhhhhhhhhHHHHHHHHHHH-HHHHhhhhHHhhc
Q 043907 269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTF-LTAQTFLPMLCHF 312 (330)
Q Consensus 269 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ 312 (330)
....+ .|+.|++.|.++.++...+..+.+- -+|++.|.+.|+.
T Consensus 370 n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 370 NNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 43344 7999999999999998777655554 4555999988875
No 70
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.89 E-value=6.3e-21 Score=158.09 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=170.7
Q ss_pred cchhhhhhhhchh----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907 2 LIASSVTRAIGRK----VSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
+++|++.||+||| +.+.+...+. .......+++++.+++.|++.|++.+...+
T Consensus 57 ~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 134 (382)
T PRK11128 57 LLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVR 134 (382)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHH
Confidence 5789999999984 3333222222 223334458899999999999988776655
Q ss_pred ----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907 57 ----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120 (330)
Q Consensus 57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (330)
+.+.+|||..|++.++..++..+...+.||.++ +++ ++
T Consensus 135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~-~~--------------------- 188 (382)
T PRK11128 135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGE-SR--------------------- 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----ccc-cc---------------------
Confidence 455679999998777544444333334454321 001 00
Q ss_pred HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+++++...++++.++++..+.......+. .........+.|.+.++.|.++.+.+ .......+..++...
T Consensus 189 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~ 258 (382)
T PRK11128 189 -----QQESAGWPAWKALLKEPTVWRFLLCVSLL----QGSHAAYYGFSAIYWQAAGYSASTIG-YLWSLGVVAEVLIFA 258 (382)
T ss_pred -----cccccccchHHHHHcChhHHHHHHHHHHH----HHHhHhHHHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHH
Confidence 00001123456666554333222222222 22234455666777778899988888 777788889999999
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||+++|+.+..+.....+..+.+... ++.+.......+.+.+++.... ....+..+. ++
T Consensus 259 ~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~ 323 (382)
T PRK11128 259 FSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLIVIQILHCGTFTVCHL-AAMRYIAAR-PG 323 (382)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-CH
Confidence 99999999999999888887777765554432 3344444444544444443333 334454565 55
Q ss_pred hhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907 281 EIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 327 (330)
Q Consensus 281 ~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (330)
+++++..+..+ .....+..++|.+.|.+.|..|...++..+++.+++
T Consensus 324 ~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T PRK11128 324 SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPA 371 (382)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 66788888876 334566689999999999998876666666655543
No 71
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.88 E-value=7.5e-21 Score=157.85 Aligned_cols=261 Identities=10% Similarity=-0.018 Sum_probs=161.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||++++.+.++..++++.+.++++. ++.|+++|++.+...|
T Consensus 56 ~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~ 132 (393)
T PRK11195 56 PFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGS 132 (393)
T ss_pred hhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 688999999999999999999999999888777664 7899999999998887
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI 122 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (330)
+.+ +.|+..+.+.+...++..+..+.+||+|+...+++. ++ .+. .++.
T Consensus 133 ~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~-------------~~~~- 194 (393)
T PRK11195 133 TIAAILLGTVLGGALAD-PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSW--NP-IAL-------------LRDF- 194 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCC--CH-HHH-------------HHHH-
Confidence 222 336666665554444444445668887642111100 00 000 0000
Q ss_pred HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
+...+.+++++..+.......+... .........|.+.+ .+|.++.+.+ .......++.++++++
T Consensus 195 ---------~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~s~~~~G-~~~~~~~~g~i~g~~~ 260 (393)
T PRK11195 195 ---------FHACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVLAWAPVALGITLNQPA-YLQAVVAIGIAVGAGA 260 (393)
T ss_pred ---------HHHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHH
Confidence 0112344444433333222222111 12233334444443 4688888888 8889999999999999
Q ss_pred HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907 202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE 281 (330)
Q Consensus 202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 281 (330)
.+++.||.++|+.+..+. ..++....+... ++.+.......+.+.+.+....+. .+...|..|++
T Consensus 261 ~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~ 325 (393)
T PRK11195 261 AARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVL 325 (393)
T ss_pred HHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCccc
Confidence 999999999888776664 333332222221 223333333334444444433333 34445766655
Q ss_pred h-hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 282 I-RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 282 ~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
. +|++.++.+...+++..++..+.+.+ +..|
T Consensus 326 ~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (393)
T PRK11195 326 VGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG 357 (393)
T ss_pred ccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC
Confidence 4 79999999999999999999888854 6667
No 72
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.88 E-value=5.1e-21 Score=160.74 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=94.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907 177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC 256 (330)
Q Consensus 177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
+.+..+.+ ...+...+...++.++.|++.||+|||+.+..+..+..+....+.+. ++.+.......
T Consensus 258 ~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~~ 323 (420)
T PRK09528 258 EQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------------TGPLEVSILKL 323 (420)
T ss_pred CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHH
Confidence 45555566 77777888889999999999999999999888877777766655542 22333333333
Q ss_pred HhhcccccccccccccccccccchhhhhhhhhH-HHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI-TVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
+.+.+.+.. .+....++.|.+|++.|++..+. .++...++..+++.+.|.+.|..|+ ..|...+++.++
T Consensus 324 l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i 394 (420)
T PRK09528 324 LHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLL 394 (420)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 333232222 12334566788899999988766 5677889999999999999999885 566665655544
No 73
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.88 E-value=1e-20 Score=158.05 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=167.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+++..+..+++++++++++++|++.++++|+++|++.+...+
T Consensus 69 ~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
T PRK15403 69 WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSI 148 (413)
T ss_pred HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999998875433
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..|||+.|++.++..++..+. .+.+||+++ ++++ ..+
T Consensus 149 ~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~---~~~~-~~~--------------------- 203 (413)
T PRK15403 149 VLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK---RGAV-PFS--------------------- 203 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc---ccCC-CCC---------------------
Confidence 444579999999988877666554 445788753 1111 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
.++..+++++.++++ .++...+..............+.|.++++ .|.++.+.+ +.......+..++..
T Consensus 204 ------~~~~~~~~~~ll~~~----~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~g-l~~~~~~~~~~i~~~ 272 (413)
T PRK15403 204 ------AKSVLRDFRNVFRNR----LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFA-WTQVPVFGAVIVANA 272 (413)
T ss_pred ------hHHHHHHHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 000011234444332 22223233333334445556677887765 588988888 777777778888888
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.++..+++..........++...+...... ..+..+.......++..+.+...+.. ... +..-+.
T Consensus 273 l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~--------~~~~~~~~~~~~~l~~~G~~~~~p~~-~~~-al~~~~ 342 (413)
T PRK15403 273 IVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL--------WPHVWLWSVLGTSLYAFGIGLIFPTL-FRF-TLFSNN 342 (413)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHHHHHHHhHHH-HHH-HhccCC
Confidence 88877655444443322222223332222221100 01222222334444444444333322 211 111122
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHH
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLV 324 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (330)
..+|++.++.+.....+...++...+++.++.....+...++++
T Consensus 343 ~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 386 (413)
T PRK15403 343 LPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVA 386 (413)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 24799999999999999999999999887764455554444443
No 74
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.88 E-value=1.5e-21 Score=161.35 Aligned_cols=259 Identities=13% Similarity=0.119 Sum_probs=157.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhcccccccc------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF-NIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
++.|+++||+|||+.+..+.++..++.+++++++ +++.+++.|+++|++.+...+
T Consensus 55 ~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 134 (366)
T TIGR00886 55 IILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGW 134 (366)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHH
Confidence 5789999999999999999999999999999999 999999999999998665433
Q ss_pred --------------cc----------CccchHHHH-HhhhHHHHH-HHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhc
Q 043907 57 --------------IK----------GGWGWRISL-AMAAAPASI-LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRG 110 (330)
Q Consensus 57 --------------~~----------~~~~wr~~~-~~~~~~~~~-~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~ 110 (330)
+. +..+||+.| ...++...+ ..+...+.+|+|+. +++ +++.+.
T Consensus 135 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~------- 203 (366)
T TIGR00886 135 GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG---KPA-TGKLSF------- 203 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc---ccc-chhccc-------
Confidence 11 134899988 443443333 33334556776631 111 000000
Q ss_pred ccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHH
Q 043907 111 ISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAV 189 (330)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 189 (330)
++... +.+++...+.++.++++..+. ..+..+...........+.|.+++ ..|.++.+.+ ....
T Consensus 204 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 268 (366)
T TIGR00886 204 KGARW----------SVGTGALGDQLKVFRDRHTWI----LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAG-AYAS 268 (366)
T ss_pred ccccc----------cccchhHHHHHHHHhccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHH
Confidence 00000 000000012333443332221 222222222334456677777775 4688888888 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccc
Q 043907 190 VAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPL 269 (330)
Q Consensus 190 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (330)
...+..+++.++.+++.||+|||+....+......+...+.... .++.+.+.............+.+.+ .
T Consensus 269 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~-~ 338 (366)
T TIGR00886 269 LGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL---------VSPLSLAVFIVLFVALFFFSGAGNG-S 338 (366)
T ss_pred HHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC---------CCcchHHHHHHHHHHHHHHhccccc-h
Confidence 88899999999999999999999887776665555544443321 0100233222333333333333333 3
Q ss_pred cccccccccchhhhhhhhhHHHHHHHHH
Q 043907 270 AWLVPSEIFPLEIRSAGQSITVAVNFVF 297 (330)
Q Consensus 270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~ 297 (330)
.+.+++|..| +++|++.|+.+..+++|
T Consensus 339 ~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 339 TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 3455578777 68999999988877654
No 75
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.88 E-value=1.4e-20 Score=156.96 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=162.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|+++||+|||+++..+..+..++.+.+.++++++.+++.|+++|++.+...+
T Consensus 61 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (394)
T PRK11652 61 LFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMG 140 (394)
T ss_pred HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998775433
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|++.++..++..+ ..++.||+|+. +++ .++
T Consensus 141 ~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~--------------------- 195 (394)
T PRK11652 141 ILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA---DAR-RTR--------------------- 195 (394)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-hhH---------------------
Confidence 34457899999987766554433 34557876531 000 000
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
.+.++++.++++..+...... +....+......+.+.++++ .|.++.+.+ .......++.+++..
T Consensus 196 ---------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~ 261 (394)
T PRK11652 196 ---------VLASYRTLLSNRRFNCYLLML----IGTLAGIAVFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAW 261 (394)
T ss_pred ---------HHHHHHHHHcChHHHHHHHHH----HHHHHHHHHHHHhChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 011233333332222222211 11222333444455666655 788888777 777777888888889
Q ss_pred HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL 280 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 280 (330)
+.+++.||.+++... ......+..+.+...... .....+.........+.+.+... |....+..|..|
T Consensus 262 ~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~- 329 (394)
T PRK11652 262 FAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF--------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP- 329 (394)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-
Confidence 999999998843322 222222222221111000 11222333333344444444333 344445567777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
++++++.++.+....+++.+++.+.+.+.+..
T Consensus 330 ~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 330 YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 57899999999999999999999988776543
No 76
>PRK10054 putative transporter; Provisional
Probab=99.87 E-value=2.7e-21 Score=160.61 Aligned_cols=271 Identities=10% Similarity=0.039 Sum_probs=169.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++.++.++..++.+..+++++++.+++.|.+.|.+.+...+
T Consensus 61 ~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (395)
T PRK10054 61 LGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTM 140 (395)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999888876654432
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+ .+||..|.+.++..++..+. .+++||+++ ++++ ++
T Consensus 141 ~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~---~~~~--~~--------------------- 193 (395)
T PRK10054 141 LNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK---AIAT--ET--------------------- 193 (395)
T ss_pred HHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc---cccc--ch---------------------
Confidence 333 68999998877766665443 344555432 0000 00
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH---HhcCCCCchhhHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF---RTLKLGESTSLLLSAVVAGGMGTVL 198 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~ 198 (330)
+ +..+.++.++++..+.......+... .......+.+.+. ++.+.++...+ .......+.....
T Consensus 194 ------~--~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 260 (395)
T PRK10054 194 ------G--SVWSPSVLLQDKALLWFTCSGFLASF----VSGAFASCISQYVMVVADSDFAEKVVA-VVLPVNAAMVVSL 260 (395)
T ss_pred ------h--hhhhhhhhccCceehHHHHHHHHHHH----HHHHhhhhHHHHHHHhcccchHHHHHH-HHHHhhhhheeee
Confidence 0 00011333333322222222221111 1222223334433 23344444555 5666666677777
Q ss_pred HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF 278 (330)
Q Consensus 199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 278 (330)
....+++.||.++|+.+..+..+..++...+... .++.+...+.......+.. ...|.....+.|..
T Consensus 261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~ 327 (395)
T PRK10054 261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------GNSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIA 327 (395)
T ss_pred hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------chHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhC
Confidence 7888999999999998888877776666555432 1222323333344443432 22344456667889
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
|++.|+++.+..+ ..++|..++|.+.|.+.|+.|. ..|++.+.+..+
T Consensus 328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~ 375 (395)
T PRK10054 328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA 375 (395)
T ss_pred CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence 9999999998755 6778999999999999999984 555555444433
No 77
>PRK10133 L-fucose transporter; Provisional
Probab=99.87 E-value=1.5e-20 Score=157.81 Aligned_cols=267 Identities=10% Similarity=0.057 Sum_probs=165.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYG---GSAFNIYMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
++.|++.||+|||+++..+..+++++++++ ..+++++.++++|+++|++.|...+
T Consensus 79 ~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~ 158 (438)
T PRK10133 79 IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA 158 (438)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHH
Confidence 578999999999999999999999999885 4678999999999999999998765
Q ss_pred -----------------cc-Cc-------------------------cchHHHHHhhh-HHHHHHHHH-HhhcCCCchhh
Q 043907 57 -----------------IK-GG-------------------------WGWRISLAMAA-APASILTIG-AIFLPETPNSK 91 (330)
Q Consensus 57 -----------------~~-~~-------------------------~~wr~~~~~~~-~~~~~~~~~-~~~~pesp~~~ 91 (330)
+. .. .+||++|+... +..++..+. ....||.|.
T Consensus 159 ~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-- 236 (438)
T PRK10133 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-- 236 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--
Confidence 10 00 24555554322 322222222 222444221
Q ss_pred hccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHH
Q 043907 92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPV 171 (330)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (330)
+++ .+ +++.+...+.+++++++..+...+.. +...........|.+.
T Consensus 237 --~~~-~~--------------------------~~~~~~~~~~~~ll~~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 283 (438)
T PRK10133 237 --DNH-SD--------------------------AKQGSFSASLSRLARIRHWRWAVLAQ----FCYVGAQTACWSYLIR 283 (438)
T ss_pred --ccc-cc--------------------------ccccchhhhHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 000 00 00000112234455444333222222 2222333334456665
Q ss_pred HH-H-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH
Q 043907 172 LF-R-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY 249 (330)
Q Consensus 172 ~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++ + ..|+++.+.+ .......++.++++++.+++.||+|+|+.+..+..+..+........ + . .
T Consensus 284 ~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~-~-~- 348 (438)
T PRK10133 284 YAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------G-G-H- 348 (438)
T ss_pred HHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------C-C-h-
Confidence 53 4 4699999998 88999999999999999999999999999887766655544433221 1 1 1
Q ss_pred HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHH
Q 043907 250 LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFG 321 (330)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~ 321 (330)
.......+.+.+.+..++ .......|..|+ +.+++.++.. ....++.++|.+.+.+.|..| . ..|++..
T Consensus 349 ~~~~~~~l~glg~~~i~P-~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~ 419 (438)
T PRK10133 349 VGLIALTLCSAFMSIQYP-TIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 122333444445554444 434444577765 4677888776 455788999999999999876 3 4555433
No 78
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.87 E-value=2.2e-20 Score=175.74 Aligned_cols=266 Identities=12% Similarity=-0.043 Sum_probs=165.8
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGG---SAFNIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
++++|+++||+|||++++++.++..+..++.. .+++++.+++.|+++|++.+...+
T Consensus 64 ~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 143 (1146)
T PRK08633 64 SSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGL 143 (1146)
T ss_pred hhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhH
Confidence 36789999999999999998877666655544 347899999999999999998766
Q ss_pred ------------------ccCc---------cchHHHHHhhhH-HHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHH
Q 043907 57 ------------------IKGG---------WGWRISLAMAAA-PASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRI 108 (330)
Q Consensus 57 ------------------~~~~---------~~wr~~~~~~~~-~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~ 108 (330)
+... .+|++.+.+..+ ..++.++..+.+||+|+....+.+ ++.
T Consensus 144 ~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------- 214 (1146)
T PRK08633 144 LEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD--KKK------- 214 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc--ccc-------
Confidence 2222 234444433333 333334445567887653111100 000
Q ss_pred hcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCc-hhhHH
Q 043907 109 RGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGES-TSLLL 186 (330)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~ 186 (330)
....++....++.+++++..+..++. .+...........+.|.++ +..|.+.. ..+ +
T Consensus 215 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g-~ 273 (1146)
T PRK08633 215 ----------------YLFPKLLWRNLKLLRSDRVLWLAIIG----LSYFWFISQLAQANFPAYAKEVLGLDNTFQVQ-Y 273 (1146)
T ss_pred ----------------cccHHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHH-H
Confidence 00000001223444443322222222 2222222334455666666 45788888 777 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccc
Q 043907 187 SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSW 266 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (330)
+.+...++.+++.++.+++.||+++++.+.++.++.+++.+.+... .+.+..++...+.+.+.+...
T Consensus 274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~ 340 (1146)
T PRK08633 274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------------PSLASVLVLFFLFGFSAGLFI 340 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999999999999988887777776666555543 233333344444444444333
Q ss_pred ccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 267 GPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 267 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
. ....++.+..|++.||+++|+.+.+..++..+++.+.+.+..
T Consensus 341 ~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 341 V-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred H-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335666789999999999999999999888777776665543
No 79
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.86 E-value=4e-20 Score=153.90 Aligned_cols=255 Identities=12% Similarity=0.081 Sum_probs=158.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS---AFNIYMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
++.|++.||+|||+++..+..+.+++.++... .++++.+++.|++.|+|.|...+
T Consensus 56 ~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (410)
T TIGR00885 56 IPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLA 135 (410)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHH
Confidence 57899999999999999999999999988654 36899999999999999998764
Q ss_pred -----------------c--c------------------------CccchHHHHHhhhHHHHHHHHHHhh--cCCCchhh
Q 043907 57 -----------------I--K------------------------GGWGWRISLAMAAAPASILTIGAIF--LPETPNSK 91 (330)
Q Consensus 57 -----------------~--~------------------------~~~~wr~~~~~~~~~~~~~~~~~~~--~pesp~~~ 91 (330)
+ . +..+||++|.+.+++.++..+...+ .||.++
T Consensus 136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-- 213 (410)
T TIGR00885 136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-- 213 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--
Confidence 1 0 1135888887777655554433322 333210
Q ss_pred hccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHH
Q 043907 92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPV 171 (330)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (330)
++ + ++++.+.+.++.++++..+......++ ..........+.+.
T Consensus 214 ---~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~----yvg~e~~~~s~l~~ 257 (410)
T TIGR00885 214 ---SD--A---------------------------KQISFSASLSRLARIRHYREGVIAQFF----YVGVQIMCWTFIIQ 257 (410)
T ss_pred ---cc--c---------------------------ccccchhhHHHHHhChhHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 00 0 000001123344443332222222222 22233344567777
Q ss_pred HHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH
Q 043907 172 LFRTLK--LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY 249 (330)
Q Consensus 172 ~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.++.+ .+..... ...........+|+++++++.||+++|+.+........+..++.... + . .
T Consensus 258 y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----------~-~--~ 322 (410)
T TIGR00885 258 YAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----------G-G--H 322 (410)
T ss_pred HHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------C-C--h
Confidence 776543 3333333 34555567788999999999999999998887777776666555542 1 1 1
Q ss_pred HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 250 LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
....+....+.+.+..+ |.......+..+++.+..+.++... .+|+.+.|++.|.+.|..
T Consensus 323 ~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 323 VGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence 22333444444545455 5556666788886655444444443 399999999999999954
No 80
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.85 E-value=7.1e-20 Score=171.83 Aligned_cols=277 Identities=13% Similarity=0.022 Sum_probs=170.4
Q ss_pred CcchhhhhhhhchhHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907 1 SLIASSVTRAIGRKVSILI---GGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
++++|.++||+|||+++.. +.+......+.....++++++++.|+++|++.+...+
T Consensus 69 ~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~ 148 (1140)
T PRK06814 69 SALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANAL 148 (1140)
T ss_pred hhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHH
Confidence 3678999999999998643 2233333333333458999999999999999998877
Q ss_pred ------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907 57 ------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL 118 (330)
Q Consensus 57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (330)
+....+|++.|...++..++.++..+++|+++.- +++. ..+.
T Consensus 149 ~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~----------------- 208 (1140)
T PRK06814 149 VEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDL-KIDR----------------- 208 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCC-eecc-----------------
Confidence 4455789999855555555555556667776431 0000 0000
Q ss_pred HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHH
Q 043907 119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTV 197 (330)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 197 (330)
+..++....++.+.+++..+. ..+..+...........+.|.+.++ +|.++...+ .+.+...++.++
T Consensus 209 -------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~i 276 (1140)
T PRK06814 209 -------NIIRSTITLLKYAKADKRIWL----AILGISWFWLVGAVVLSQLPLLAKETLGGDENVAT-LFLAVFSVGVAV 276 (1140)
T ss_pred -------chHHHHHHHHHHHhcCchHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHH-HHHHHHHHHHHH
Confidence 000000112444444333222 2222222223334555678888754 688888888 888999999999
Q ss_pred HHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC---------CCcchhHHHHHHHHHhhccccccccc
Q 043907 198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG---------CSEGYAYLILVLVCLCSSGYCYSWGP 268 (330)
Q Consensus 198 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (330)
+.++.+++.|+.++++.+..+.++.++..+.+.+... ...... ....+.+...+..++++.+.+....+
T Consensus 277 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (1140)
T PRK06814 277 GSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS--SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVP 354 (1140)
T ss_pred HHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc--ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHH
Confidence 9999999998887777666555555544443332100 000000 00122333344444444444433333
Q ss_pred ccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 269 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
..+++.+..|++.||+++|+.++...++..+++.+.+.+.+..
T Consensus 355 -~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 355 -LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred -HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566689999999999999999999999999999999887543
No 81
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.84 E-value=4.8e-19 Score=147.90 Aligned_cols=278 Identities=12% Similarity=0.094 Sum_probs=161.5
Q ss_pred cchhhhhhhh-----chhH-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------
Q 043907 2 LIASSVTRAI-----GRKV-SILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ---------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~-----Grk~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~---------------- 56 (330)
+++|+++||+ |||| .+..+.++.+++....++. ++++.+.+..++.++..+...+
T Consensus 50 ~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~ 129 (402)
T PRK11902 50 FLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG 129 (402)
T ss_pred HHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 5789999999 8875 6888888888888877776 3567777777777766655443
Q ss_pred -----------------------ccC-ccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc
Q 043907 57 -----------------------IKG-GWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS 112 (330)
Q Consensus 57 -----------------------~~~-~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~ 112 (330)
+.+ ..|||..|++.++..++..+..++.||+++. +++ .++.+
T Consensus 130 ~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~-~~~~~---------- 195 (402)
T PRK11902 130 AGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARP-PRSLG---------- 195 (402)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccc-cchhH----------
Confidence 333 2599999999887766655555667776531 111 00000
Q ss_pred chhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHH-
Q 043907 113 DVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVA- 191 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 191 (330)
++.+++++++++++..+.......+...... .......+.+.++.|+++++.+ ......
T Consensus 196 ----------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g-~~~~~~~ 255 (402)
T PRK11902 196 ----------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVG-IVNKTLG 255 (402)
T ss_pred ----------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHH-HHHhHHH
Confidence 0011234555555444433333222222111 1112223445566899988887 655443
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH----hhcccccccc
Q 043907 192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL----CSSGYCYSWG 267 (330)
Q Consensus 192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (330)
.++.+++.++.+++.||+|||+.+..+.....+..+.+..... .+++.+........ .+...+ ...
T Consensus 256 ~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 325 (402)
T PRK11902 256 LAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPKHLWTMALAIGIENLCGGMGTA-AFV 325 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4568899999999999999999877666665554433322210 11122322222221 111111 222
Q ss_pred cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 268 PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 268 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
+....++.+.+|.+.+ +..+....++...++.+.|.+.|..|+ ..|.+.+.+++++
T Consensus 326 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~ 382 (402)
T PRK11902 326 ALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPG 382 (402)
T ss_pred HHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3444566777776654 444445567777677789999999996 4455555555443
No 82
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.84 E-value=7.9e-20 Score=153.75 Aligned_cols=304 Identities=17% Similarity=0.229 Sum_probs=200.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHhhcccccccc-----------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFG-RLLLGVGIGFGNQ----------------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-r~l~G~~~g~~~~----------------------- 56 (330)
+|+.+.+.||+|.|++.+.|.++..++.++.+++++++++++. -++.|+|.|..+.
T Consensus 98 gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~ 177 (509)
T KOG2504|consen 98 GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVS 177 (509)
T ss_pred ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhc
Confidence 4788999999999999999999999999999999999888875 4888999998876
Q ss_pred ---------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHH----------H-HHh
Q 043907 57 ---------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKML----------Q-RIR 109 (330)
Q Consensus 57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~----------~-~~~ 109 (330)
+.+.+|||+.+++.+.+.+-.... ...-|.+++...+ + .++-++.. + +..
T Consensus 178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 254 (509)
T KOG2504|consen 178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--E-EKDLRNSAASVESTPKPVELRIS 254 (509)
T ss_pred cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--h-hhhhccccccccccccccccccc
Confidence 556689999888877665554444 3334433321111 0 00000000 0 000
Q ss_pred ccc--chh---HHHHHHHHhccccc--cCccch----HHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCC
Q 043907 110 GIS--DVK---AELNDLIRASSTSK--SITQPF----KNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKL 178 (330)
Q Consensus 110 ~~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 178 (330)
..+ ..+ .+.++.++..++.. ..+... .+++ +.+.++...+.......++.....++|.+.++.|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll----~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~ 330 (509)
T KOG2504|consen 255 ERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL----KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL 330 (509)
T ss_pred cCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 000 000 00111111111111 111111 2333 33666777777777778888888999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907 179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGR--KVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC 256 (330)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
++.+.. ...+..++..+++.++.|++.|+... +....++.+..+++.+..... +..+.......
T Consensus 331 ~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-------------~~~~~l~~~~~ 396 (509)
T KOG2504|consen 331 SSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-------------TTYVGLIVFSI 396 (509)
T ss_pred ChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHH
Confidence 999999 99999999999999999999999874 344444555555555333332 33334444444
Q ss_pred HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHHHHH
Q 043907 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGLVLI 326 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~ 326 (330)
+++...+ .+.......+.|+.+.+.-..+.|+...+..++..++|++.+.+.|..+ + ..|+..+.+.++
T Consensus 397 ~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 397 LFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 4444433 3344544566899999999999999999999999999999999999888 4 444444444433
No 83
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.84 E-value=1.5e-19 Score=148.69 Aligned_cols=259 Identities=12% Similarity=0.078 Sum_probs=154.2
Q ss_pred cchhhhhhhh-----chhHHH-HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------
Q 043907 2 LIASSVTRAI-----GRKVSI-LIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ---------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~-----Grk~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~---------------- 56 (330)
+++|+++||+ ||||.+ +.+.+..++.....++. .+.+.+....++.+++.+...+
T Consensus 39 ~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~ 118 (356)
T TIGR00901 39 FLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELG 118 (356)
T ss_pred HHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc
Confidence 5789999998 899974 66777777777777776 4555666666677765554433
Q ss_pred -----------------------ccCccc--------hHHHHHhhhHHHHHHHHHHhh-cCCCchhhhccCCcHHHHHHH
Q 043907 57 -----------------------IKGGWG--------WRISLAMAAAPASILTIGAIF-LPETPNSKIQRSDDHQKAQKM 104 (330)
Q Consensus 57 -----------------------~~~~~~--------wr~~~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~a~~~ 104 (330)
+.+..+ ||..|++.++..++..+..++ .||+++. +++ .++
T Consensus 119 ~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~-~~~---- 190 (356)
T TIGR00901 119 YGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASV-PKP---- 190 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---ccc-chh----
Confidence 334455 999999988876665555443 5664320 000 000
Q ss_pred HHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhh
Q 043907 105 LQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSL 184 (330)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 184 (330)
+ +++.+.+++++++++..++......... ...........+.|.+.++.|+++++.+
T Consensus 191 ---------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~g 247 (356)
T TIGR00901 191 ---------------L-------TQAVLKPIREFFQRKNMIQALLLLLLIV-LYKLGDSAATVLTTLFLLDMGFSKEEIA 247 (356)
T ss_pred ---------------H-------HHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 0 0000123444444433222332222222 2234445666778888877899888877
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccc
Q 043907 185 LLSAVVAG-GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYC 263 (330)
Q Consensus 185 ~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (330)
......+ +..+++.++++++.||+|||+.+..+.++..+....+.+...... ..+ ...+..+....+..+...+.+
T Consensus 248 -~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~ 324 (356)
T TIGR00901 248 -LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH-HDG-ITFPHLLMLFLTITLEAVTGG 324 (356)
T ss_pred -HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccc-cccchHHHHHHHHHHHHHHhH
Confidence 5555444 677899999999999999999988777776665554443210000 000 000122333333333333434
Q ss_pred cccccccccccccccchhhhhhhhhHHHHHHH
Q 043907 264 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 295 (330)
Q Consensus 264 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 295 (330)
... +....+..|.+|+++||+.+|+.+...+
T Consensus 325 ~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 325 LGT-VAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 333 3446677899999999999999877653
No 84
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4.3e-19 Score=147.86 Aligned_cols=205 Identities=19% Similarity=0.212 Sum_probs=145.5
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
+++|.+.||++..+.+..+.+++++-.++.....|++.+++.|++.|+.++..+|
T Consensus 99 ~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~ 178 (495)
T KOG2533|consen 99 FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYAS 178 (495)
T ss_pred hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHh
Confidence 4689999999999999999999999998888899999999999999999999999
Q ss_pred --------------c------cCccchHHHHHhhhHHHHHHHHH-HhhcCCCch--hhhccCCcHHHHHHHHHHHhcccc
Q 043907 57 --------------I------KGGWGWRISLAMAAAPASILTIG-AIFLPETPN--SKIQRSDDHQKAQKMLQRIRGISD 113 (330)
Q Consensus 57 --------------~------~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~--~~~~~~~~~~~a~~~~~~~~~~~~ 113 (330)
+ ....||||.|++.+++.++..+. .+++|+.|. +..+ ++|.+-..++.+
T Consensus 179 ~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~----~~ek~~~~~~~~---- 250 (495)
T KOG2533|consen 179 ASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT----DEEKELVVERLR---- 250 (495)
T ss_pred cchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccc----hHHHHHHHHHHH----
Confidence 1 45679999999999887776655 566999986 2211 111110011110
Q ss_pred hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHH
Q 043907 114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAG 192 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 192 (330)
+.+....+++.+...+++.++. +.++...+..++.....+.+.+|+|.++++ .|++..++. .+.++..
T Consensus 251 ------~~~~~~~~~~~~~~~~~~a~~d----p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~-~ls~~~~ 319 (495)
T KOG2533|consen 251 ------ESPSGGIENKFKWKGFKEALKD----PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN-LLSTPYD 319 (495)
T ss_pred ------hccCCCcccccCHHHHHHHHhc----hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc-cccchHH
Confidence 0001111111223334444444 334445555555666678899999999987 568899998 8999999
Q ss_pred HHHHHHHHHHHHHHHH----hCcchhhhHhhHHHHHH
Q 043907 193 GMGTVLAIISMILADK----FGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~ 225 (330)
++++++.+++|.++|| ..+|........+....
T Consensus 320 ~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~ 356 (495)
T KOG2533|consen 320 VGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII 356 (495)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 55565555544444433
No 85
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.83 E-value=8.8e-19 Score=148.21 Aligned_cols=276 Identities=15% Similarity=0.119 Sum_probs=179.6
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhcccccccc-------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA-----FNIYMLIFGRLLLGVGIGFGNQ------------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~------------------- 56 (330)
++++|.++||++|||+++.+.++..+..+..++. .+.+.+++.-++.|++.+...|
T Consensus 62 sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~ 141 (524)
T PF05977_consen 62 SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAAN 141 (524)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence 3679999999999999999998887665554432 4678899999999999988877
Q ss_pred --------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907 57 --------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 --------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
+....|-.+.|.+.++..++.+......++.++ +++. .+|
T Consensus 142 al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~-~~e---------------- 201 (524)
T PF05977_consen 142 ALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSL-PRE---------------- 201 (524)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---cccc-chh----------------
Confidence 223345566777766554444333333322211 0000 000
Q ss_pred HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHH
Q 043907 117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMG 195 (330)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 195 (330)
+..++.+..++-..+++..+..+....+.. .........+|.+.+ .+|.++...+ ++.+..+++.
T Consensus 202 ---------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~----l~~~a~~aLlPl~a~~~l~~~a~~yG-ll~a~~gvGa 267 (524)
T PF05977_consen 202 ---------RFFSALREGLRYVRSSPPLRSVLLRSFLFN----LFASAVWALLPLFARDVLGGGASGYG-LLLAAFGVGA 267 (524)
T ss_pred ---------hhhhhHHHHHHHHhcchHHHHHHHHHHHHH----HhhhHHHHhhhHHHHHHhCCcHHHHH-HHHHHHHHHH
Confidence 000011122333332322222222111111 112233445677774 5788888888 8999999999
Q ss_pred HHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907 196 TVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS 275 (330)
Q Consensus 196 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (330)
++|.++.+++.+|+++++.+..+.+..+++.+.+++. .+.+......++.+.+...... ...+...
T Consensus 268 i~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q 333 (524)
T PF05977_consen 268 ILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIALFLAGAAWIIANS-SLNTLVQ 333 (524)
T ss_pred HHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999998888888877777766654 4445555555555444443333 3345557
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHH
Q 043907 276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLV 324 (330)
Q Consensus 276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 324 (330)
+..|++.||+++++.++....+..++..+.|.+.+..| ..++.+.++..
T Consensus 334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l 383 (524)
T PF05977_consen 334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL 383 (524)
T ss_pred HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998 45555444433
No 86
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.81 E-value=2.3e-18 Score=145.74 Aligned_cols=264 Identities=19% Similarity=0.180 Sum_probs=157.6
Q ss_pred Ccchhhhhhh----hchhH-HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhcccccccc-------------
Q 043907 1 SLIASSVTRA----IGRKV-SILIGGVAFLADSAYGGSAFN------IYMLIFGRLLLGVGIGFGNQ------------- 56 (330)
Q Consensus 1 ~~~~g~l~d~----~Grk~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~------------- 56 (330)
.|+.|+++|| +|||| .++.+....+++.+++...++ ...+.+.+++.+++.+...+
T Consensus 52 ~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 131 (437)
T TIGR00792 52 DPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP 131 (437)
T ss_pred cchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH
Confidence 3688999997 68744 567788888888887766653 45666777777766554322
Q ss_pred -------------------------------cc---CccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHH
Q 043907 57 -------------------------------IK---GGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKA 101 (330)
Q Consensus 57 -------------------------------~~---~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a 101 (330)
+. +..+||+.+.+.+++.++..+. .+..||.++. .+ .++
T Consensus 132 ~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~----~~-~~~- 205 (437)
T TIGR00792 132 RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE----IP-KNI- 205 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC----CC-ccc-
Confidence 11 2457888888777766555444 3446665310 00 000
Q ss_pred HHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCC
Q 043907 102 QKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGE 180 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 180 (330)
+++.+.++.++++++++. +....+..+....+......+.+.+.+. .+ ++
T Consensus 206 ------------------------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 256 (437)
T TIGR00792 206 ------------------------EKKLSLKQIFKALFKNDQ----LLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DP 256 (437)
T ss_pred ------------------------ccCCCHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHcchhheeEeeecC-Ch
Confidence 000001122334443322 2222222222223333333344444432 23 34
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhc
Q 043907 181 STSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSS 260 (330)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (330)
...+ .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.+. + .+.+...+...+.+.
T Consensus 257 ~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~g~ 323 (437)
T TIGR00792 257 ELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-----------G-SNLPLILVLIILAGF 323 (437)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----------c-hhHHHHHHHHHHHHH
Confidence 4444 56667789999999999999999999999988877777665554432 1 222333333333333
Q ss_pred ccccccccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 261 GYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 261 ~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+.+.. .+..+.+.+|..+ ++.+|+..|+.+....++..+++.+.+.+.+..|
T Consensus 324 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 324 GQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43333 2344555567654 4567999999999999999999999999988765
No 87
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.80 E-value=7.3e-18 Score=140.37 Aligned_cols=225 Identities=8% Similarity=-0.091 Sum_probs=129.8
Q ss_pred ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchH
Q 043907 57 IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFK 136 (330)
Q Consensus 57 ~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (330)
+.+..|||..|++.++..++..+..++++|+++ ++++ .+ ++...+++
T Consensus 156 l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~-~~-----------------------------~~~~~~~~ 202 (390)
T TIGR02718 156 LFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV---ASPE-AP-----------------------------LARRASLF 202 (390)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc-cc-----------------------------hhhHHHHH
Confidence 455679999999988777665555555544321 0000 00 00012345
Q ss_pred HhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhCcchhh
Q 043907 137 NIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAG-GMGTVLAIISMILADKFGRKVLF 215 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~ 215 (330)
+.+|++..+.......+.. ........+.+.+.++.|+++++.+ ......+ ...+++.++.|++.||+|+|+.+
T Consensus 203 ~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 277 (390)
T TIGR02718 203 RFFRRPLAWSLLALALLSA----MTAVSGFGLSKLYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF 277 (390)
T ss_pred HHHcCcCHHHHHHHHHHHH----HHHHHHHHHhhHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5555544333333222222 2233444566777778899999888 6666555 46667789999999999999998
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch-hhhhhhhhHHHHHH
Q 043907 216 LVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL-EIRSAGQSITVAVN 294 (330)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~ 294 (330)
..+.....+........... . ...................+...... .....+..++ +.+++.+++.+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (390)
T TIGR02718 278 ILGVGLAGSLALLWFAQAAF---W----LAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTR 349 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHc---c----cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHH
Confidence 87666553332222111100 0 00111111222222222223232222 2333455554 88999999999999
Q ss_pred HHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 295 FVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
.++..++|.+.|.+.|..|+ ..|...+++.+++
T Consensus 350 ~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 350 DLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 99999999999999999885 5666555554443
No 88
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7e-19 Score=137.45 Aligned_cols=276 Identities=15% Similarity=0.029 Sum_probs=181.8
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++.|.+.||+|+|..+++|+..+..++++.++.+++++++++|.+||+|.+....
T Consensus 123 np~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGial 202 (464)
T KOG3764|consen 123 NPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIAL 202 (464)
T ss_pred cccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999998776
Q ss_pred ----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907 57 ----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120 (330)
Q Consensus 57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (330)
+.+..|.+.+|.+.++.+++-..+.+++-|.-+ .+
T Consensus 203 gfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~------------------------ 253 (464)
T KOG3764|consen 203 GFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD------------------------ 253 (464)
T ss_pred HHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC------------------------
Confidence 445568899999999888887777666433211 00
Q ss_pred HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907 121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLA 199 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 199 (330)
+++.++..+++++++++... ..................-++.++ +++..+.-+.+ .......+...+++
T Consensus 254 -----~~~~~~~~~~~~Ll~dP~I~----~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G-~~fLp~~~~y~ig~ 323 (464)
T KOG3764|consen 254 -----PDSTEQGTPMWSLLMDPYIL----LIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVG-LAFLPASLSYAIGT 323 (464)
T ss_pred -----ccccccCccHHHHHhCchHh----hhhcchhhccchHHHhCcccHHHHHHhccCCCccee-eeecccccchhccC
Confidence 11223345677777654322 122211111222233333334433 55664444677 88889999999999
Q ss_pred HHHHHHHHHhC--cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907 200 IISMILADKFG--RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI 277 (330)
Q Consensus 200 ~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 277 (330)
.+.|.+.||++ |......+....+++.....++.. ....+......++.+........|....+ .|.
T Consensus 324 ~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~----------~~~L~vp~~~l~~~i~~~dasl~P~l~~l-vd~ 392 (464)
T KOG3764|consen 324 NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS----------IAQLWVPNFGLGFGIGLADASLIPTLGYL-VDP 392 (464)
T ss_pred chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh----------HHHHhhhhHHHHHHHHHHHHHHhhhhHHh-cch
Confidence 99999999999 544444444444544444444310 01222233333333333333333433223 344
Q ss_pred cchh---hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHH
Q 043907 278 FPLE---IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLI 326 (330)
Q Consensus 278 ~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 326 (330)
-..+ ..|...++......++.+++|.+.|.+.+..| .|...+.+..+++
T Consensus 393 rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 393 RHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 4444 67889999999999999999999999999999 4555555555443
No 89
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.78 E-value=3.4e-18 Score=132.92 Aligned_cols=279 Identities=12% Similarity=0.036 Sum_probs=148.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
++.+|.++||||||++++.|++..++..++.+.+.|+..+.++|++.|+..|...+
T Consensus 85 S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a 164 (451)
T KOG2615|consen 85 SPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTA 164 (451)
T ss_pred hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehh
Confidence 46899999999999999999999999999999999997777779999999998766
Q ss_pred ------ccCcc----------chHHHHHhhh----HHHHH-HHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907 57 ------IKGGW----------GWRISLAMAA----APASI-LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK 115 (330)
Q Consensus 57 ------~~~~~----------~wr~~~~~~~----~~~~~-~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (330)
+.+.. .=+++|.... +.... .....+++||+-. .+++ .++..... + ..+.+
T Consensus 165 ~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~-~~~~~~~~-~---~~~~~ 236 (451)
T KOG2615|consen 165 FGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKR-NDEHSTLQ-E---AADDR 236 (451)
T ss_pred hhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhh-cccccchh-h---hhhhh
Confidence 11100 0012232222 22222 3344677899832 1222 11100000 0 00000
Q ss_pred HHHHHHHHhccccccCccchHHhcc-cccch--hHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHH
Q 043907 116 AELNDLIRASSTSKSITQPFKNIIQ-RKYRP--QPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVA 191 (330)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 191 (330)
++..+.. +..-....+ .+... ...-.+.+..+.....+....++.+.+. +.+|+++.+.+ .+.+..
T Consensus 237 ---~~~~~~~------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G-~vl~~t 306 (451)
T KOG2615|consen 237 ---LALLKFA------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG-KVLSTT 306 (451)
T ss_pred ---hhhcchh------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe-eeeehh
Confidence 0000000 000000111 11111 1111111222222122222223333332 56899999888 777777
Q ss_pred HHHHHHHHHHHHHHHHHhC--cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccc
Q 043907 192 GGMGTVLAIISMILADKFG--RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPL 269 (330)
Q Consensus 192 ~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (330)
++.+.+.+....+..||.+ .+-.+..+...+.-..+.+... ...........+..+..+ ...+.
T Consensus 307 Gl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------------~~~~~l~~~s~l~sf~~A-~~vt~ 372 (451)
T KOG2615|consen 307 GLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------------RTPVVLYLGSTLKSFSTA-SVVTC 372 (451)
T ss_pred hHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------------ccchhhhHHHHHHHHHHH-HhhHH
Confidence 7777777766666666654 2323333322222222222211 111222222222222222 22233
Q ss_pred cccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
...++....|+++||+.+|+....+.++-+++|.+.|.....
T Consensus 373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 345557889999999999999999999999999999876653
No 90
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.1e-16 Score=124.17 Aligned_cols=257 Identities=16% Similarity=0.105 Sum_probs=183.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.+.+...+
T Consensus 64 ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~s 142 (395)
T COG2807 64 APAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTS 142 (395)
T ss_pred HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHH
Confidence 4677899999999999999999999999998877 778888899999998888776
Q ss_pred --------------ccCc-cchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGG-WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~-~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.++ .|||....+-+.++++.++.++. ...|. + .
T Consensus 143 l~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP--q~~r~---~-~------------------------- 191 (395)
T COG2807 143 LGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP--QALRE---Q-A------------------------- 191 (395)
T ss_pred HHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh--hcccc---c-c-------------------------
Confidence 3333 37999998888888877766553 21110 0 0
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
...+....+-..+++++..+ ...+.+..+...++....|+|.++.+.|+++.+++ ...+...+.+++.++.
T Consensus 192 ----~~~~~~~~~~~~vw~~~~aW----~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll 262 (395)
T COG2807 192 ----ASIATKLVSVRKVWRSPLAW----QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAG-SLLSLMQLAQLPTALL 262 (395)
T ss_pred ----cccccccccccccccCchhH----HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHH
Confidence 00111112223345454333 34444445556678899999999999999999999 9999999999999999
Q ss_pred HHHHHHHh-CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc-cccc
Q 043907 202 SMILADKF-GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS-EIFP 279 (330)
Q Consensus 202 ~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p 279 (330)
...+.+|. .+|+........+.++.+.+.+. |.+..+.. ..+.+.+.+..+. +....+. +.-.
T Consensus 263 ~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~lw---~~llG~G~G~~F~-laL~li~~rs~~ 327 (395)
T COG2807 263 IPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPILW---ALLLGLGQGGAFP-LALTLILLRSSD 327 (395)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHHHH---HHHHhCccchHHH-HHHHHHHhhcCC
Confidence 99999974 56666666667777777666543 22222222 2334444443333 3333333 3345
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+++.+.-.|+.+..+++....+|.+.|.+.|..|
T Consensus 328 a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 328 AAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred hHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 6677888899999999999999999999999998
No 91
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.78 E-value=9.4e-17 Score=135.74 Aligned_cols=294 Identities=15% Similarity=0.132 Sum_probs=167.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++|.||||.+++.+.++..+|+++++.++|...++.+-.+.|+|.|....
T Consensus 96 ~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~ 175 (599)
T PF06609_consen 96 PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPF 175 (599)
T ss_pred HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999887654
Q ss_pred -------------ccCccchHHHHHhhhHHHHHHHHH--HhhcCCCchhhhccCCcHHHHHHHHHHH-------------
Q 043907 57 -------------IKGGWGWRISLAMAAAPASILTIG--AIFLPETPNSKIQRSDDHQKAQKMLQRI------------- 108 (330)
Q Consensus 57 -------------~~~~~~wr~~~~~~~~~~~~~~~~--~~~~pesp~~~~~~~~~~~~a~~~~~~~------------- 108 (330)
+..+.+|||.|++..+...+.++. .++.|++.+-+..++....+..+.++.+
T Consensus 176 i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfL 255 (599)
T PF06609_consen 176 IITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFL 255 (599)
T ss_pred HhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344568999999988766555443 3334433211111111011111111111
Q ss_pred -----hcc---c-chhHHHHHHH---------HhccccccCcc--chHHhcccccchhHHHHHHHHHHHHhhhhHhHHHh
Q 043907 109 -----RGI---S-DVKAELNDLI---------RASSTSKSITQ--PFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLY 168 (330)
Q Consensus 109 -----~~~---~-~~~~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (330)
.+. . +..+...... --.|.....+. -..++++++ |.+.+.++..+.....++....+
T Consensus 256 lgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l 332 (599)
T PF06609_consen 256 LGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNIL 332 (599)
T ss_pred HHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000000000 00011111111 123444331 23333333333333334454455
Q ss_pred HHHHH-HhcCCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-hHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907 169 SPVLF-RTLKLGES---TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLF-LVGGMQMLVSQVIIGSIMAAQLGDHGGC 243 (330)
Q Consensus 169 ~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
.|... ..++-+.. ..+ +.....+.+...+..+.+.+..+++|-|.. +.+.+++.++.-.+... +.
T Consensus 333 ~p~~~~~vf~~d~~~~~~~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~------~~--- 402 (599)
T PF06609_consen 333 WPQQVVNVFGSDPISITEIG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV------RP--- 402 (599)
T ss_pred HHHHHhhhccCCCcccceee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc------cC---
Confidence 55544 33444432 345 667778888889999999999988876654 45554544433333322 00
Q ss_pred CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
+..+.. .....+.+.+.+.... .....+.-..|++.-|++.|+..+++.+|+.++..+...+..+
T Consensus 403 ~n~~~~--i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 403 DNKNAA--IAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred CCcchH--HHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 111222 2223333333332222 2233445567999999999999999999999998888766543
No 92
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.75 E-value=5.6e-16 Score=131.51 Aligned_cols=310 Identities=11% Similarity=0.030 Sum_probs=169.1
Q ss_pred cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|.+.|++.|...+
T Consensus 66 ~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~ 145 (475)
T TIGR00924 66 SVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTL 145 (475)
T ss_pred hhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehh
Confidence 578999999 8999999999999999999999999999999999999999987654
Q ss_pred ------------------ccCccchHHHHHhhhHHHHHHHHHHhhcC----CCchhhhccCCcHHHHHHHHHHH------
Q 043907 57 ------------------IKGGWGWRISLAMAAAPASILTIGAIFLP----ETPNSKIQRSDDHQKAQKMLQRI------ 108 (330)
Q Consensus 57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~p----esp~~~~~~~~~~~~a~~~~~~~------ 108 (330)
+.+..|||+.|.+.++..++..+..++.+ +.|+. ++..+.++.+...+..
T Consensus 146 ~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 223 (475)
T TIGR00924 146 FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAAL 223 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHH
Confidence 44556899999887765444444333333 22210 0000011100000000
Q ss_pred ---------hcccchhHHHHHH-----HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH
Q 043907 109 ---------RGISDVKAELNDL-----IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR 174 (330)
Q Consensus 109 ---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (330)
...+......... .....++.. +....+..+++ ...++...+.....+..+....+..+.+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~ 300 (475)
T TIGR00924 224 ALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAF-KPRLDAVARNK--MYAYIVLFLEAVVFWVLYAQMPTSLNFFAD 300 (475)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHhH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0000000000000 000000000 00000010111 111222222222223333344444454443
Q ss_pred h-cCCCC----chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhh--hHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 175 T-LKLGE----STSLLLSAVVAGGMGTVLAIISMILADKFGRK-----VLF--LVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 175 ~-~g~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
+ .+.+. -..+ ++.+...+..++..++..++..|.+|| ... .+|.++.+++...+.+.... .++
T Consensus 301 ~~~~~~~~~~~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~--~~~-- 375 (475)
T TIGR00924 301 NNMHHEMLGMSVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF--ADA-- 375 (475)
T ss_pred HhccccccceEECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--cCC--
Confidence 3 22221 1134 566777777777776655544444443 333 56777777766665543111 111
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~ 321 (330)
....+.++.+....+...+. ....|....++.|..|++.||+.+|+......+|..+++.+.....+..++ +.|...+
T Consensus 376 ~~~~s~~~~i~~~~~~~~ge-~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 454 (475)
T TIGR00924 376 GGLTSPWFMVLIYLFQTLGE-LMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIG 454 (475)
T ss_pred CCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 11234455555555555554 344566677788999999999999999999999999999888877666553 3443333
Q ss_pred H
Q 043907 322 G 322 (330)
Q Consensus 322 ~ 322 (330)
.
T Consensus 455 ~ 455 (475)
T TIGR00924 455 L 455 (475)
T ss_pred H
Confidence 3
No 93
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.75 E-value=6.2e-16 Score=131.27 Aligned_cols=293 Identities=10% Similarity=0.025 Sum_probs=158.2
Q ss_pred cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHhhcccccccc-----------------------
Q 043907 2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFNIYM-LIFGRLLLGVGIGFGNQ----------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~----------------------- 56 (330)
+++|+++|| +||||++..+.+++.++++.++++++... +.++|.++|+|.|...+
T Consensus 68 ~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~ 147 (489)
T PRK10207 68 SIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTL 147 (489)
T ss_pred hhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhH
Confidence 578999999 99999999999999999999999876544 55899999999998876
Q ss_pred ------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhh--ccCCcHHHHHHHH-----------
Q 043907 57 ------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKI--QRSDDHQKAQKML----------- 105 (330)
Q Consensus 57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~--~~~~~~~~a~~~~----------- 105 (330)
+.+..|||+.|++.++..++.++.....++..+... .++++.|.....+
T Consensus 148 ~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~ 227 (489)
T PRK10207 148 FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFV 227 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHH
Confidence 556679999998865533333333333332211000 0011011100000
Q ss_pred -HHHhcccchhHHHHHHH----H--hccccccCccchHHhcccccchhHHHHHHHH--HHHHhhhhHhHHHhHHHHHHh-
Q 043907 106 -QRIRGISDVKAELNDLI----R--ASSTSKSITQPFKNIIQRKYRPQPVMAILIP--FFQQVTGINIVGLYSPVLFRT- 175 (330)
Q Consensus 106 -~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 175 (330)
....+..+......... . -..++.+.+ +.+|+ +.+..+.+. ....+..+....+..+.+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~----~~~r~----r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~ 299 (489)
T PRK10207 228 CAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLD----KTGRN----KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINN 299 (489)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHH----HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence 00000000000000000 0 000000000 12222 222222211 111222223333444555542
Q ss_pred c-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-------hhHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907 176 L-----KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVL-------FLVGGMQMLVSQVIIGSIMAAQLGDHGGC 243 (330)
Q Consensus 176 ~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
. |+... .. .......+..++..++.+++.||.++|+. +..|.++.+++.+.+....... ... .
T Consensus 300 ~~~~~~G~~i~-~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~-~~~--~ 374 (489)
T PRK10207 300 VHHEILGFSIN-PV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF-ADA--Q 374 (489)
T ss_pred ccccccceEEC-HH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh-cCC--C
Confidence 2 22211 12 34445556677888889999999998873 5667777666654443211111 111 0
Q ss_pred CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
...+.++......+.+.+.... .|....++.+..|++.+|.++|+.+....+|+.++..+....
T Consensus 375 ~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 375 GLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223344444445555554433 344455667889999999999999999999999988877544
No 94
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.74 E-value=1.2e-15 Score=125.69 Aligned_cols=264 Identities=16% Similarity=0.079 Sum_probs=167.0
Q ss_pred cchhhhhhhhc-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------ccC
Q 043907 2 LIASSVTRAIG-RKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---------------------IKG 59 (330)
Q Consensus 2 ~~~g~l~d~~G-rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~---------------------~~~ 59 (330)
+++|.++||++ +||.+.++.++.++........++++.+++.-++..+......| +-.
T Consensus 55 ~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwG 134 (400)
T PF03825_consen 55 PFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWG 134 (400)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhh
Confidence 57899999986 57888888888888777777788888888877777776655555 000
Q ss_pred ccch--------------------HHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907 60 GWGW--------------------RISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN 119 (330)
Q Consensus 60 ~~~w--------------------r~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (330)
..|| .+.+++.+...++.....+.+|+.|+ +++. ++
T Consensus 135 SiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~---~~~~--~~------------------- 190 (400)
T PF03825_consen 135 SIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPP---KRSA--KE------------------- 190 (400)
T ss_pred hHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcc---cccc--CC-------------------
Confidence 1111 12233333333333333445677652 0100 00
Q ss_pred HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcC-CCCchhhHHHHHHHHHHHHHH
Q 043907 120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLK-LGESTSLLLSAVVAGGMGTVL 198 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 198 (330)
+.++....+..+++|++..... .+..+...........+.+.+.++.| .+....+ ...++..+.+++.
T Consensus 191 ------~~~~~~~~~~~~llk~~~~~~F----ll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g-~~~~l~~~aEi~~ 259 (400)
T PF03825_consen 191 ------SVKKLLGLDALKLLKNPRFLVF----LLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIG-ILWALGVVAEIPF 259 (400)
T ss_pred ------CcccccchHHHHHhcCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH-HHHHHHHHHHHHH
Confidence 0011111223345554433322 22222233344566677888888887 6767666 6777888999999
Q ss_pred HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH----HHhhccccccccccccccc
Q 043907 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV----CLCSSGYCYSWGPLAWLVP 274 (330)
Q Consensus 199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 274 (330)
-...+++..|+|.|+++.++.....+=..++.... ++.+...... .+-+..++..+. ....++
T Consensus 260 f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------------~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi 326 (400)
T PF03825_consen 260 FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------------DPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYI 326 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH
Confidence 99999999999999999999888777766665531 1112222222 223333333333 445677
Q ss_pred ccccchhhhhhhhhHHHHH-HHHHHHHHHHhhhhHHhhcc
Q 043907 275 SEIFPLEIRSAGQSITVAV-NFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 275 ~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g 313 (330)
.|..|++.|++++++.+.. ..+|..+++.+.|.+.|+.|
T Consensus 327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998765 56899999999999999987
No 95
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.5e-15 Score=119.65 Aligned_cols=270 Identities=16% Similarity=0.153 Sum_probs=170.7
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhcccccccc--------ccCc--cc-----
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGG---SAFNIYMLIFGRLLLGVGIGFGNQ--------IKGG--WG----- 62 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~--------~~~~--~~----- 62 (330)
++..|++.+|+|+|+.++.+..++++++.+.. -..++..++++-++.|.|.+...+ +.+. ..
T Consensus 65 ~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl 144 (422)
T COG0738 65 SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNL 144 (422)
T ss_pred hccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH
Confidence 46789999999999999999999999999884 457889999999999999998776 1111 11
Q ss_pred -------------------------------------------hHHHHHhhhHHHHHHHHHHhh--cCCCchhhhccCCc
Q 043907 63 -------------------------------------------WRISLAMAAAPASILTIGAIF--LPETPNSKIQRSDD 97 (330)
Q Consensus 63 -------------------------------------------wr~~~~~~~~~~~~~~~~~~~--~pesp~~~~~~~~~ 97 (330)
||++|...+...++..+.... .||.+
T Consensus 145 ~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~--------- 215 (422)
T COG0738 145 AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ--------- 215 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC---------
Confidence 222222222221111111111 11110
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHhccccccC-ccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-
Q 043907 98 HQKAQKMLQRIRGISDVKAELNDLIRASSTSKSI-TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT- 175 (330)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (330)
...+++.+. +....+++++++.+.-.+..++ ....-.....+++.+..+
T Consensus 216 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~Fl----YVG~Eva~gsfl~~y~~~~ 266 (422)
T COG0738 216 -------------------------VAAPSLGASGSAGLSSLFQNKHLRLGVLAIFL----YVGAEVAIGSFLVSYLEEL 266 (422)
T ss_pred -------------------------cccccccccccchHHHHHhChHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhc
Confidence 000001111 1135566665544443333333 333445667788888866
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907 176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV 255 (330)
Q Consensus 176 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
.|.++.++. ...+....+.++|++++.++..|+...|.+....+...+.++...+. + ....+...
T Consensus 267 ~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-------------~-g~v~~~~l 331 (422)
T COG0738 267 LGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-------------G-GVVALYAL 331 (422)
T ss_pred CCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-------------c-ChHHHHHH
Confidence 788888888 88999999999999999999999999998887776666655555554 1 13334444
Q ss_pred HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHH
Q 043907 256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLI 326 (330)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 326 (330)
...+.+.+..+ |.......+..| ++-..+.++ ..+...|+++.|++.|++.|..| ...+......|.+
T Consensus 332 ~~ig~F~simf-PTIfslal~~l~-~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l 400 (422)
T COG0738 332 FLIGLFNSIMF-PTIFSLALKNLG-EHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL 400 (422)
T ss_pred HHHHHHhHHHH-HHHHHHHHhccC-cccccccee-eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444444444 454556567777 444444443 44566899999999999999998 3444444444433
No 96
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.6e-15 Score=112.59 Aligned_cols=137 Identities=10% Similarity=0.048 Sum_probs=98.3
Q ss_pred hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH-HHHHHHHHHHHh
Q 043907 160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS-QVIIGSIMAAQL 237 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~-~~~~~~~~~~~~ 237 (330)
.....+....|.++ +++|+++..++ .+.+.......+.+++.|.++||+|++...+.+..+..+. -..+.+..
T Consensus 278 va~fPFi~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---- 352 (459)
T KOG4686|consen 278 VAWFPFITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---- 352 (459)
T ss_pred HHHHHHhhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----
Confidence 44455556667776 56899999988 7778788888899999999999999998877665544433 23333321
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
.+.+.. .++.+..++.... ..|.+++.+.|+++-|++.|..+...+++-++.|.+.+.+.|+.|
T Consensus 353 --------lsPy~~---m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 353 --------LSPYTS---MTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred --------ccHHHH---HHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 233332 2333333332222 235566788899999999999999999999999999999999877
No 97
>PTZ00207 hypothetical protein; Provisional
Probab=99.70 E-value=1.2e-15 Score=129.95 Aligned_cols=307 Identities=12% Similarity=0.055 Sum_probs=179.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHhhcccccccc-------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA------FNIYMLIFGRLLLGVGIGFGNQ------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~g~~~~------------------- 56 (330)
++.|++.||+|||+++.++.+++.++.++++++ ++++.+++.|++.|+|.+...+
T Consensus 79 lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~G 158 (591)
T PTZ00207 79 LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVA 158 (591)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHH
Confidence 368999999999999999999999999999997 6899999999999999886654
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHH-Hhh--cCCCchhhhccCCcHHHHHHHHHHHhcc---
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIG-AIF--LPETPNSKIQRSDDHQKAQKMLQRIRGI--- 111 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~--~pesp~~~~~~~~~~~~a~~~~~~~~~~--- 111 (330)
+.. .+|+..|++.++..++..+. ..+ .|++|++..++++ .+++++..++..+.
T Consensus 159 i~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~ 236 (591)
T PTZ00207 159 IMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYL 236 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccC-CCHHHHHHHhhhhhhhh
Confidence 111 36887777766655554333 333 4555555433332 22222221110000
Q ss_pred ------------------------------------c----------------------------------chhHHHHHH
Q 043907 112 ------------------------------------S----------------------------------DVKAELNDL 121 (330)
Q Consensus 112 ------------------------------------~----------------------------------~~~~~~~~~ 121 (330)
. +.+.+.++.
T Consensus 237 ~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~ 316 (591)
T PTZ00207 237 KQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEH 316 (591)
T ss_pred hcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccc
Confidence 0 000000000
Q ss_pred -H--Hhccccc--------c-C----ccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc-CCCCch-h
Q 043907 122 -I--RASSTSK--------S-I----TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL-KLGEST-S 183 (330)
Q Consensus 122 -~--~~~~~~~--------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~ 183 (330)
+ .+..+++ + . ..++.+.+ .+.-++..+..+++....-......+.++.+.. |.+.+. .
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l----~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~ 392 (591)
T PTZ00207 317 VEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGL----KTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDAL 392 (591)
T ss_pred ccccccccccccccccccccCCCCCCcchHHHHH----hchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccc
Confidence 0 0000000 0 0 00222222 234455555555555555566677788888888 773333 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcch--------hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907 184 LLLSAVVAGGMGTVLAIISMILADKFGRKV--------LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV 255 (330)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
.....++.++++.+|.+..|.+.....+|+ ..+....++.++.+++.... + .....+..
T Consensus 393 ~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~----------p---~~~L~~~~ 459 (591)
T PTZ00207 393 NTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL----------P---KAALPLPY 459 (591)
T ss_pred eeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC----------C---ccHhHHHH
Confidence 203678889999999999998873333222 22222222333333333321 1 12344445
Q ss_pred HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHH-HHhhhhHHhhc----------c----chhHHHH
Q 043907 256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLT-AQTFLPMLCHF----------K----AGIFFFF 320 (330)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~----------g----~~~~~~~ 320 (330)
.+.+.+++..++ +....++|+|. ++-|+-+-+.....-+|+.+. ..+.|.++|.- | ..+|.+.
T Consensus 460 ~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~ 537 (591)
T PTZ00207 460 FIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFL 537 (591)
T ss_pred HHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHH
Confidence 555556666665 44556689999 888988888888888888877 66778888652 1 1377888
Q ss_pred HHHHHHhhc
Q 043907 321 GGLVLIMTS 329 (330)
Q Consensus 321 ~~~~~~~~~ 329 (330)
+++|.++.+
T Consensus 538 ~~~~~~g~~ 546 (591)
T PTZ00207 538 LGLSFLAFI 546 (591)
T ss_pred HHHHHHHHH
Confidence 888777653
No 98
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.69 E-value=8.2e-15 Score=123.00 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhhHhhHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRK--VLFLVGGMQM 222 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~ 222 (330)
+....+++..+....+...+......+.+ ++|++..+.. .......+..++|+++.+++.||+|.| +++..+....
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 33444555555555666777777777775 7899999988 888899999999999999999999999 7766665555
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHH
Q 043907 223 LVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTA 302 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 302 (330)
.+..+.-.+-.. .. .....+.+...++..+.+...+ +..+..-++.+|+.|+++.+..+|+....+...++++|
T Consensus 360 ~~i~~~g~~G~~--~~---~~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 360 IIIPLYGLFGFW--PS---FFGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred HHHHHHHHHHhh--hc---ccCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 332222111000 00 0011333444444444444443 33446667779999999999999999999999999999
Q ss_pred HhhhhHHhhcc--chhHHHHHHHHHHh
Q 043907 303 QTFLPMLCHFK--AGIFFFFGGLVLIM 327 (330)
Q Consensus 303 ~~~~~~~~~~g--~~~~~~~~~~~~~~ 327 (330)
.+.+.+.+..| ...+....++.+++
T Consensus 434 ll~g~i~~~tg~~r~g~~~l~~lf~~g 460 (477)
T PF11700_consen 434 LLFGLITDATGSQRYGFLFLLVLFLIG 460 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 99999999887 24444444444333
No 99
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.69 E-value=2.7e-15 Score=126.37 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=113.1
Q ss_pred ccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043907 132 TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG 210 (330)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 210 (330)
++.+++.++++..+..+.. .+....+........+++.+. .|.+ +..+ .......+..+++.++.++++||+|
T Consensus 215 ~~~~~~~~~nr~~~~l~~~----~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~-~~~~~~~~~~~v~~~~~~~l~~r~g 288 (428)
T PF13347_consen 215 RDSLRSLFRNRPFRILLLA----FFLQWLAFALMNTFLPYYFTYVLGNE-GLIS-IFMLIFFVASIVGSPLWGRLSKRFG 288 (428)
T ss_pred ccchhhhcccchHHHHHHH----HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhH-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555554433333332 333333444445555556554 3444 4444 6677888999999999999999999
Q ss_pred cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch-------hhh
Q 043907 211 RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL-------EIR 283 (330)
Q Consensus 211 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r 283 (330)
+|+.+..+..+.+++.+.+.+. ++.+.+...+...+.+.+.+..+ ...+.+.+|..+. +..
T Consensus 289 k~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 289 KKKVYIIGLLLAALGFLLLFFL-----------GPGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred ceeehhhhHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCch
Confidence 9999999999998888877665 22455556666666666665444 4667777888763 335
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 284 SAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
|...|+.+....++..+++.+.+.+.+..|
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 888899999999999999999998887655
No 100
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.64 E-value=6.6e-16 Score=134.75 Aligned_cols=214 Identities=14% Similarity=0.123 Sum_probs=131.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh----------------------------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF---------------------------------------------- 35 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~---------------------------------------------- 35 (330)
++.|+++||+|||+.+.++.++++++++++++.+
T Consensus 86 i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 165 (633)
T TIGR00805 86 IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQ 165 (633)
T ss_pred HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccc
Confidence 5689999999999999999999999999987753
Q ss_pred -----hHHHHHHHHHHhhcccccccc---------------------------------------ccCc-----------
Q 043907 36 -----NIYMLIFGRLLLGVGIGFGNQ---------------------------------------IKGG----------- 60 (330)
Q Consensus 36 -----~~~~~~~~r~l~G~~~g~~~~---------------------------------------~~~~----------- 60 (330)
.+..++++|+++|+|.+...+ +.+.
T Consensus 166 ~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~ 245 (633)
T TIGR00805 166 HKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED 245 (633)
T ss_pred cCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence 245778999999999998876 1111
Q ss_pred -----------cchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccc
Q 043907 61 -----------WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSK 129 (330)
Q Consensus 61 -----------~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (330)
.+||..|++.+++.++..+..+++||..+....+.+ .++.++. ..+..+ ++... +..+..+
T Consensus 246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~~~~~~--~~~~~~--~~~~~---~~~~~~~ 317 (633)
T TIGR00805 246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-VDVHETE--KLEKSE--DKSRK---KNSDITK 317 (633)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-hhhhhhh--cccccc--cccch---hhhhhHH
Confidence 037778888887777766656667664320000000 0000000 000000 00000 0000000
Q ss_pred cCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHH
Q 043907 130 SITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGG-MGTVLAIISMILAD 207 (330)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d 207 (330)
+....+++++++ +.++...+..+........+..++|.+++ .+|+++.+++ .......+ +.+++.+++|+++|
T Consensus 318 ~~~~~~~~Ll~n----~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~ 392 (633)
T TIGR00805 318 DFPKIIKRLLCN----PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEAN-FLIGVVNLPAAGLGYLIGGFIMK 392 (633)
T ss_pred HHHHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHhhhhhhhHHHHHHhhhhheee
Confidence 011223344433 45555555555556667788889999986 5899998888 66665554 56899999999999
Q ss_pred HhCc--chhhhHhhHHHHHHHHH
Q 043907 208 KFGR--KVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 208 ~~gr--r~~~~~~~~~~~~~~~~ 228 (330)
|+++ |+.+..+.+...++.+.
T Consensus 393 r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 393 KFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred eecccHHHHHHHHHHHHHHHHHH
Confidence 9884 45666666555555433
No 101
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.64 E-value=5.2e-14 Score=120.30 Aligned_cols=290 Identities=10% Similarity=0.071 Sum_probs=147.4
Q ss_pred cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhcccccccc-----------------------
Q 043907 2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAF-NIYMLIFGRLLLGVGIGFGNQ----------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~----------------------- 56 (330)
+++|+++|| +|||+.+..+.++..++..++++++ +.+.+.++|.++|++.|...+
T Consensus 75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~ 154 (500)
T PRK09584 75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTM 154 (500)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchH
Confidence 468999999 5999999999999999999998874 566777899999999887554
Q ss_pred ------------------ccCccchHHHHHhhhHHHHHHHHHH----hhcCCCchhhhccCCcHHHHHHHH---------
Q 043907 57 ------------------IKGGWGWRISLAMAAAPASILTIGA----IFLPETPNSKIQRSDDHQKAQKML--------- 105 (330)
Q Consensus 57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~----~~~pesp~~~~~~~~~~~~a~~~~--------- 105 (330)
+.+..|||+.|.+.++..++..+.. ..++|.++- .++++ .|......
T Consensus 155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 232 (500)
T PRK09584 155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEP-INYRKLLLTIVGVVALI 232 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccc-cchhhHHHHHHHHHHHH
Confidence 5566799999998775444433222 223433110 00000 11100000
Q ss_pred --HH-HhcccchhHHHHHHHHhccccccCccchHHh--cccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-----h
Q 043907 106 --QR-IRGISDVKAELNDLIRASSTSKSITQPFKNI--IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-----T 175 (330)
Q Consensus 106 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 175 (330)
.. .....+............... ...++. .++..+++....+.+... ...++......+..+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~f~~~~~q~~~~l~~~~~~~ 306 (500)
T PRK09584 233 AIATWLLHNQEIARMALGVVALGIVV----IFGKEAFAMKGAARRKMIVAFILMLE--AIIFFVLYSQMPTSLNFFAIRN 306 (500)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHhhcCHHHHHHHHHHHHHHHH--HHHHHHHHHHhccHHHHHHHHh
Confidence 00 000000000000000000000 000000 001111222222211111 1112222222222221 1
Q ss_pred c-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc----hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcc
Q 043907 176 L-----KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRK----VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEG 246 (330)
Q Consensus 176 ~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
. |+. .... +..+...+..++..++..++-+|.++| +.+.++..+.+++...+...... .+ .....
T Consensus 307 ~~~~~~g~~-i~~~-~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~--~~--~~~~v 380 (500)
T PRK09584 307 VEHSILGIA-VEPE-QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKF--AN--DAGIV 380 (500)
T ss_pred ccccccceE-ECHH-HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHh--cC--CCCcc
Confidence 1 111 1133 455666666666766665555555544 55677777777777766554211 00 01112
Q ss_pred hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 247 YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
+.++......+.+.+ .....|....++.+..|++.||+.+|+......+++.++..+..
T Consensus 381 s~~~~~~~~~l~~~g-e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 381 SVNWLIASYGLQSIG-ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred CHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444 34455666777789999999999999887666667766666654
No 102
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.63 E-value=1.4e-14 Score=123.48 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=89.6
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
........+.+++.+....++...+ .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~---- 319 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA---- 319 (473)
T ss_pred HHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 3444444455545444333344444 55666678889999999999999999999887776655554443322100
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
++.+.+...+...+.+.+.+... +..+++++|..+ .+..|...|.......++..+++.+.+.+.+..
T Consensus 320 ----~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 320 ----APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11223333333333333433333 345566678755 333455888999999999999999999988765
Q ss_pred c
Q 043907 313 K 313 (330)
Q Consensus 313 g 313 (330)
|
T Consensus 395 G 395 (473)
T PRK10429 395 G 395 (473)
T ss_pred C
Confidence 5
No 103
>PRK09669 putative symporter YagG; Provisional
Probab=99.63 E-value=2.6e-14 Score=121.02 Aligned_cols=116 Identities=19% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
.......+..+++.++.+++.||+|+|+....+.....+....+... +.++.+...+...+.+.+.+ .
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~g~~~~-~ 335 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-----------PPSNVWLIFALNILFNFIQN-L 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------CcchHHHHHHHHHHHHHHHH-H
Confidence 44555667778888999999999999999887766555433322222 22333334444444444444 3
Q ss_pred cccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 266 WGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 266 ~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
..+..+.+++|..+ .+..|...+..+....++..+++.+.+.+.+..|
T Consensus 336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33566777778775 2234566788888899999999999999888765
No 104
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.62 E-value=5.4e-15 Score=120.65 Aligned_cols=286 Identities=10% Similarity=0.085 Sum_probs=171.2
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|.++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|...+
T Consensus 80 Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~ 159 (511)
T TIGR00806 80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAV 159 (511)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999998776
Q ss_pred ------------ccCccchHHHHH---hhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 ------------IKGGWGWRISLA---MAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 ------------~~~~~~wr~~~~---~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
....+|||+.+. +......+.++..+++|..++-+.-++++..+ .....+.+...+.+. .+.
T Consensus 160 ~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~-~~~~~~~~~~~~~~~--~~~ 236 (511)
T TIGR00806 160 LLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR-GALPCELDQMVPGPG--GKL 236 (511)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc-cccccccccCCCCCc--ccc
Confidence 223468987544 44444445566677888666544333220110 000000000000000 000
Q ss_pred HHhccccccCccc---hHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCc-hhhHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQP---FKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGES-TSLLLSAVVAGGMGTV 197 (330)
Q Consensus 122 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 197 (330)
.+ ..+...... +.+-++..++++.++-..+.+....++++.+.+|...+-++..-+++ -.+ ..-.+..+.+.+
T Consensus 237 ~~--~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~ 313 (511)
T TIGR00806 237 ED--YLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAI 313 (511)
T ss_pred ch--hhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHH
Confidence 00 000000011 11112233445556666677777778888888888877766533222 334 677777888888
Q ss_pred HHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907 198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI 277 (330)
Q Consensus 198 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 277 (330)
.++..|++-.++.+..-+.++.....-+.+++... ..++.|.......++...+..... +...-+++.
T Consensus 314 ~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-----------~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~ 381 (511)
T TIGR00806 314 TSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-----------QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASS 381 (511)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-----------cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999988555543333333333222222222211 125667777777777777665544 333333555
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907 278 FPLEIRSAGQSITVAVNFVFTFLTAQTF 305 (330)
Q Consensus 278 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 305 (330)
...+.-|..+|+.++..-+...+...+.
T Consensus 382 L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 382 LSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hcccceEEEEecHHHHHHHHHHheEEEE
Confidence 6666679999998888877776666554
No 105
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=110.18 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 150 AILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
.+.+..+....+.+........+-. ++|++..+.. .......+..++|+++.|++.||+|.|+++..+.++..+..+.
T Consensus 256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~ 334 (438)
T COG2270 256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY 334 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH
Confidence 3444444444666777777777775 7899999998 8888999999999999999999999999998888877776665
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
..+. .......++..+.+...+ +..+..-.+..+..|+++-++.+|+++..++..++++|++.+..
T Consensus 335 ~~~~-------------~~~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 335 LIFL-------------EGELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred HHHc-------------cccHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 5543 112222222223332333 33345567778999999999999999999999999999999999
Q ss_pred Hhhccc
Q 043907 309 LCHFKA 314 (330)
Q Consensus 309 ~~~~g~ 314 (330)
.+..|.
T Consensus 401 t~iTg~ 406 (438)
T COG2270 401 TQITGS 406 (438)
T ss_pred HHHhcc
Confidence 998883
No 106
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.62 E-value=9.8e-14 Score=111.17 Aligned_cols=155 Identities=10% Similarity=-0.012 Sum_probs=103.8
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHHHh---cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLFRT---LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
..+..+.....-.....|.+.++++ .|+++++.+ ...+....+.++|+++.+++.||+|+|+.+..+..+..++.+
T Consensus 145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3444444444456677888888854 488888888 889999999999999999999999999988777666665553
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
+.... +. ..........+.+.+..++ .......+..|++ .+++.++. ..+.+|+.+.|.+.|.
T Consensus 224 l~~~~-------------~~-~~~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~ 286 (310)
T TIGR01272 224 GAALT-------------HG-YVAMWFVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGS 286 (310)
T ss_pred HHHHc-------------CC-HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHH
Confidence 33221 11 1122233334444443333 3344445666643 56667775 5677999999999999
Q ss_pred HHhhcc-chhHHHHHHH
Q 043907 308 MLCHFK-AGIFFFFGGL 323 (330)
Q Consensus 308 ~~~~~g-~~~~~~~~~~ 323 (330)
+.|..| ..++++...+
T Consensus 287 lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 287 LADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHhccchHHHHHHHHH
Confidence 999888 4555544433
No 107
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.61 E-value=1.1e-13 Score=115.57 Aligned_cols=165 Identities=8% Similarity=-0.036 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHH-h-cCCCCc------hh---hHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhh
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFR-T-LKLGES------TS---LLLSAVVAGGMGTVLAIISMILADKFGR-KVLF 215 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~------~~---~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~ 215 (330)
+...++..+..+.+...+..|.+.+.. + ++-++. +. +.+......+...+.+++..++.+|+|+ |+..
T Consensus 260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~ 339 (477)
T TIGR01301 260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLW 339 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 333444444455666667777766653 2 332221 11 2244455566666777788889999985 6666
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhC--CC----C-CCCc-chhHHHHHHHHHhhcccccccccccccccccccchh--hhhh
Q 043907 216 LVGGMQMLVSQVIIGSIMAAQLG--DH----G-GCSE-GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSA 285 (330)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~ 285 (330)
..+.++.++++....+......+ +. . ..++ ...+..+......+..++... .++++++++..|++ ..|.
T Consensus 340 ~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~-siPfal~s~~~~~~~~~~G~ 418 (477)
T TIGR01301 340 GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY-SIPFALASIRSSNLGAGQGL 418 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHccccCCCCcc
Confidence 77877777777766654221100 00 0 0011 112445555555555555443 37788888888854 4599
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 286 GQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 286 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
.+|+.|.+..+.+.+.....|.+.+..|
T Consensus 419 ~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 419 SMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998888766666
No 108
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.60 E-value=7.4e-14 Score=113.19 Aligned_cols=153 Identities=13% Similarity=0.121 Sum_probs=108.3
Q ss_pred hhhHhHHHhHHHHHHhc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLFRTL----KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAA 235 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 235 (330)
..++......+.+++.+ +.+....+ ...+...+.+.+...+..++.+|+|.|+.++++..++.+=....++.
T Consensus 234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--- 309 (412)
T PF01306_consen 234 AIYDVFDQQFPIYFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--- 309 (412)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---
Confidence 33444444455555443 33444556 78889999999999999999999999999999999988887777764
Q ss_pred HhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHH-HHHHHHHHHHHHHhhhhHHhhcc-
Q 043907 236 QLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFVFTFLTAQTFLPMLCHFK- 313 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g- 313 (330)
++.+.....-.+-+.-+..... ...-|+++.+|+|..++...+. +....++..+.+...|.+.|+.|
T Consensus 310 ----------~~~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~ 378 (412)
T PF01306_consen 310 ----------TNPWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF 378 (412)
T ss_dssp -----------SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc
Confidence 4444444444443333333322 2345668999999999999885 67788999999999999999999
Q ss_pred chhHHHHHHHHHHh
Q 043907 314 AGIFFFFGGLVLIM 327 (330)
Q Consensus 314 ~~~~~~~~~~~~~~ 327 (330)
..+|++.+.+.+..
T Consensus 379 ~~tylimg~iv~~~ 392 (412)
T PF01306_consen 379 QHTYLIMGLIVLPF 392 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56888877765543
No 109
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.60 E-value=4.1e-15 Score=125.93 Aligned_cols=290 Identities=11% Similarity=0.013 Sum_probs=164.0
Q ss_pred cchhhhhhhhc-----hhHHHHHHHHHHH-HHHHHHhhhhhHHHHH-HHHHHhhcccccccc------------------
Q 043907 2 LIASSVTRAIG-----RKVSILIGGVAFL-ADSAYGGSAFNIYMLI-FGRLLLGVGIGFGNQ------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~~G-----rk~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~r~l~G~~~g~~~~------------------ 56 (330)
+++|+++||++ ||+.++++.++.+ +.....+..++..... +.+++.+++.+...+
T Consensus 78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~ 157 (468)
T TIGR00788 78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGP 157 (468)
T ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCC
Confidence 46899999998 7888888877763 4433344445544344 367777777666544
Q ss_pred -----------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907 57 -----------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD 113 (330)
Q Consensus 57 -----------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (330)
+.+..+||..|++.+...++..+...++||++.....+.+ +++... ..
T Consensus 158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~~-~~------- 228 (468)
T TIGR00788 158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEMN-MA------- 228 (468)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchhh-hh-------
Confidence 3455689999888777666665556677886411001101 000000 00
Q ss_pred hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHH
Q 043907 114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGG 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 193 (330)
... .... +..++...+.++.++++..++.....++.+. ...+ .....+. ...+..|+++...+ ......++
T Consensus 229 -~~~-~~~~---~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~-~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v 299 (468)
T TIGR00788 229 -LLT-LGVL---ANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPG-ASGSVFC-ATTQCLPGGPSFSG-MSKVVGNL 299 (468)
T ss_pred -hhh-hhHH---HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCC-CCceeEE-EEcccCCCCcchhh-hHHHHHHH
Confidence 000 0000 0000001112222333222221221222011 1111 1101111 11145799999999 88888999
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV 273 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
+.+++..+.++..+|++.|+.+..+.++..++.......... .+..... ...+.......+...+.+....|. ..+
T Consensus 300 ~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~~~~gi--~~~~~~~~~~~l~~~~~g~~~~~~-~~~ 375 (468)
T TIGR00788 300 GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKR-WNLAFGI--SDEVFVLGDSIIAEVLAQLKFMPF-LVL 375 (468)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeec-cccccCC--CCeeeeeehhHHHHHHHHHHHccH-HHH
Confidence 999999999999999999999988888777766443211100 0000000 111122222333344444555555 455
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+.+..|++.+|+.+++.+...+++..+++.+++.+.+..|
T Consensus 376 ~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 376 LARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999998877
No 110
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.59 E-value=4.1e-14 Score=119.46 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 225 (330)
.......+..+...........+.|.+.+++|++..+.+ ...+...++..++.++.|++.||+|||+.+..+..+.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence 333444444444444445667788999999999999988 8889999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907 226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF 305 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 305 (330)
.+..... ++.+.......+.+.+.+.... ....++.|.+|+++|+++.++.+....++..+++.+.
T Consensus 102 ~~~~~~~-------------~~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 102 NILFGFS-------------SSLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766653 2333333333333333333333 4455668999999999999999999999999999999
Q ss_pred hhHHhhccc-hhHHHHHHHH
Q 043907 306 LPMLCHFKA-GIFFFFGGLV 324 (330)
Q Consensus 306 ~~~~~~~g~-~~~~~~~~~~ 324 (330)
+.+.+..|| +.|++.++++
T Consensus 168 ~~l~~~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 168 GAIALHYGWRYGMMIAGIIA 187 (434)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 999988886 4555555443
No 111
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.57 E-value=6.5e-13 Score=108.90 Aligned_cols=150 Identities=20% Similarity=0.175 Sum_probs=106.7
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVII 229 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 229 (330)
.++..+....+.+.......++.+ ..|.++.... ..........+++.++..++.+|+|+|+++..+.++..++...+
T Consensus 241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555554 3455555555 56666677777779999999999999999999999999888888
Q ss_pred HHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHH
Q 043907 230 GSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTA 302 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~ 302 (330)
.+. +.++....++..++...+.+.. .+++|++++|... .+.-|...+....+.-++.+++.
T Consensus 320 ~f~-----------~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 320 YFT-----------PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred Hhh-----------cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 776 3345555555556655565543 4577888888753 33457778888999999999999
Q ss_pred HhhhhHHhhcc
Q 043907 303 QTFLPMLCHFK 313 (330)
Q Consensus 303 ~~~~~~~~~~g 313 (330)
.+.++..+..|
T Consensus 388 ~~~g~~L~~~G 398 (467)
T COG2211 388 FIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHcC
Confidence 99999888766
No 112
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.6e-14 Score=113.46 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=141.0
Q ss_pred cchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHH
Q 043907 143 YRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQM 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 222 (330)
.+.+.++...+........-..+..-.|.+.++.+++.++.+ .+.+...+...++-++.|.++||.+.|..+..+.++.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 444566666666665555555666677899999899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHH
Q 043907 223 LVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTA 302 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 302 (330)
++..+++++. .+.....++..+.+.+.+.+++|....+ +.-+|+++||+..++.|.+.++|+.+.|
T Consensus 105 ai~nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 105 AIVNILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHH
Confidence 9999999885 4666677777777888888888876666 7999999999999999999999999999
Q ss_pred Hhh--hhHHhhccc-hhHHHHHHHHHHh
Q 043907 303 QTF--LPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 303 ~~~--~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
.+. +.+.++.+| ..|++-++++++.
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiiv 198 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIV 198 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999 888887775 5666655555443
No 113
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.55 E-value=1.8e-13 Score=114.62 Aligned_cols=166 Identities=14% Similarity=-0.012 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907 145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 224 (330)
++......+.+..............|.+.+++|++..+.+ +..+...++..++.++.|++.||+|||+.+..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 4455555555555556666667777877889999999999 999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
+.+...+. ++.+.......+.+.+.+.. .|....++.|.+|+++|+++.++.+....++..+++.+
T Consensus 86 ~~~~~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 86 ASTATMFA-------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHHh-------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777654 33344444444444444433 34545667899999999999999999999999999999
Q ss_pred hhhHHh------hccc-hhHHHHHHHHH
Q 043907 305 FLPMLC------HFKA-GIFFFFGGLVL 325 (330)
Q Consensus 305 ~~~~~~------~~g~-~~~~~~~~~~~ 325 (330)
.+.+.+ ..|| +.|++.++..+
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l 179 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSV 179 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHH
Confidence 988764 2465 55655554443
No 114
>PRK09848 glucuronide transporter; Provisional
Probab=99.55 E-value=4.3e-13 Score=113.86 Aligned_cols=141 Identities=15% Similarity=0.043 Sum_probs=92.3
Q ss_pred hhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907 160 TGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG 238 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
.+........|.+.++ .|.++.... .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------ 314 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------ 314 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------
Confidence 3344444556666553 465544444 44444456778899999999999999999998888777776555432
Q ss_pred CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh-------hhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE-------IRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
++.+.+.......+.+.+.+... +...++.+|..|.+ .+|...|+.+....++..+++.+.+.+.+.
T Consensus 315 -----~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 315 -----SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred -----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333333344444444333 34455656776643 458899999999999999999999988766
Q ss_pred cc
Q 043907 312 FK 313 (330)
Q Consensus 312 ~g 313 (330)
.|
T Consensus 389 ~G 390 (448)
T PRK09848 389 SG 390 (448)
T ss_pred cC
Confidence 54
No 115
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.55 E-value=2e-13 Score=113.67 Aligned_cols=148 Identities=8% Similarity=-0.005 Sum_probs=116.7
Q ss_pred hHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907 164 IVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGC 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
......|.+.+++|.++.+.+ ...+...+...++.++.|++.||+|||+.+..+..+.+++.+.....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------- 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444457788899999999998 88888999999999999999999999999999999988877766553
Q ss_pred CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHH
Q 043907 244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGG 322 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 322 (330)
++.+...+...+.+.+.+. ..+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+| +.|++.+.
T Consensus 106 --~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 --NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred --ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3444455555555545443 3345566678999999999999999999999999999999999998886 56665555
Q ss_pred HHHH
Q 043907 323 LVLI 326 (330)
Q Consensus 323 ~~~~ 326 (330)
++++
T Consensus 183 l~~~ 186 (394)
T PRK10213 183 MGVL 186 (394)
T ss_pred HHHH
Confidence 4443
No 116
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.54 E-value=1.7e-13 Score=120.50 Aligned_cols=134 Identities=19% Similarity=0.061 Sum_probs=105.5
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
..+....|.+.+++|.+..+.+ ++.+...++.+++.++.|+++||+|||+.++.+.++.+++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g-~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa---------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKG-MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV---------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4455667888888999988888 88899999999999999999999999999999888888777666553
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
++.+..+++.++.+.+.+.. .+....++.|.+|++.|++..++.+....+|..+++.+...+...
T Consensus 253 ---~s~~~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 253 ---QGYGFFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred ---hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555554433 356677889999999999999999999999999888877665543
No 117
>TIGR00895 2A0115 benzoate transport.
Probab=99.54 E-value=2.3e-13 Score=113.93 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
......+..+...........+.|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33334444444444455666778888899999998888 88889999999999999999999999999998888777776
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
+..... .+.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+
T Consensus 97 ~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 97 LLCALA-------------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHc-------------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 665543 23333444444444444433 3455667789999999999999999999999999999999
Q ss_pred hHHhhccc-hhHHHH
Q 043907 307 PMLCHFKA-GIFFFF 320 (330)
Q Consensus 307 ~~~~~~g~-~~~~~~ 320 (330)
.+.+..+| ..+++.
T Consensus 163 ~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 163 WLIPVFGWRSLFYVG 177 (398)
T ss_pred HHhhcccceeehhhh
Confidence 99888885 344444
No 118
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.7e-13 Score=108.81 Aligned_cols=166 Identities=15% Similarity=0.074 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
+....+..+...+.-......+|++.+++|.+..+++ ...+.+..+..++.++...+.||+.||++++..+.++.++.+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 3344455555555556777888999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
+..+. ++.+..++.-...+...+..++ +...+..|+.|+++|+++.++......+...++.+++.+
T Consensus 94 l~alA-------------p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 94 LSALA-------------PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred HHHHh-------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence 98876 5566666666666666654444 656777899999999999999999999999999999999
Q ss_pred HHhhccc-hhHHHHHHHHHHhh
Q 043907 308 MLCHFKA-GIFFFFGGLVLIMT 328 (330)
Q Consensus 308 ~~~~~g~-~~~~~~~~~~~~~~ 328 (330)
+-|.+|| .+|+..+++.++..
T Consensus 160 ig~~~GWR~~F~~ia~l~ll~~ 181 (394)
T COG2814 160 LGQLFGWRATFLAIAVLALLAL 181 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 9999997 68888887776654
No 119
>PRK03545 putative arabinose transporter; Provisional
Probab=99.53 E-value=2.4e-13 Score=113.42 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=115.5
Q ss_pred hHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907 164 IVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGC 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
......|.+.+++|.++.+.+ +..+...+...++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----------- 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344457888899999999999 88889999999999999999999999999999988888887776654
Q ss_pred CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHH
Q 043907 244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGG 322 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 322 (330)
++.+...+.....+.+.+ ...+....++.|.+|+++|+++.|+......++..++|.+.+.+.+..|| +.|++.++
T Consensus 95 --~~~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 --WNFTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 334444444443333332 22344456668999999999999999999999999999999999888885 56676666
Q ss_pred HHHHh
Q 043907 323 LVLIM 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
++++.
T Consensus 172 ~~~l~ 176 (390)
T PRK03545 172 GALIT 176 (390)
T ss_pred HHHHH
Confidence 55443
No 120
>PRK10054 putative transporter; Provisional
Probab=99.53 E-value=3.9e-13 Score=111.97 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 150 AILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
......+....+......+.|.++ ++.|++..+.+ +..+...+...+++++.|+++||+|||+.+..+.....++.+.
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 333444444566666677777776 56899999999 8888889999999999999999999999998888877777666
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
+.+. ++.+....+....+.+.+ ...+....+..|..|+++|+++.|+.+...+++..++|.+.+.+
T Consensus 90 ~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 90 IPLV-------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 223333333333332222 23344556668999999999999999999999999999999988
Q ss_pred Hhhccc-hhHHHHHHHHHH
Q 043907 309 LCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 309 ~~~~g~-~~~~~~~~~~~~ 326 (330)
.+ .+| ..|++.++++++
T Consensus 156 ~~-~g~~~~f~~~~~~~~i 173 (395)
T PRK10054 156 VM-QSINLPFWLAAICSAF 173 (395)
T ss_pred HH-hccCcHHHHHHHHHHH
Confidence 75 564 566655544443
No 121
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.53 E-value=3.4e-13 Score=112.44 Aligned_cols=153 Identities=18% Similarity=0.098 Sum_probs=117.2
Q ss_pred HhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh
Q 043907 158 QVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
...+........|.+.+++|.++.+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----- 90 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----- 90 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----
Confidence 334445555667888899999999999 89999999999999999999999999999999888888777766553
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hh
Q 043907 238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GI 316 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ 316 (330)
++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+| ..
T Consensus 91 --------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 161 (385)
T TIGR00710 91 --------NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAI 161 (385)
T ss_pred --------ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 33344444444444444333 334456678999999999999999999999999999999999888885 45
Q ss_pred HHHHHHHHH
Q 043907 317 FFFFGGLVL 325 (330)
Q Consensus 317 ~~~~~~~~~ 325 (330)
+++.+++.+
T Consensus 162 ~~~~~~~~~ 170 (385)
T TIGR00710 162 FAFLSLAGI 170 (385)
T ss_pred HHHHHHHHH
Confidence 555554443
No 122
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.53 E-value=3.2e-13 Score=115.87 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 225 (330)
..+...++..+...........-.|.+.+++|.+.++.+ +..+.+.++...+.++.|+++||+|||+.+..+..+..++
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345556666666666677788889999999999998888 8999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc-cchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI-FPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
.+..... ++.+..++...+.+.+.+. ..+.....+.+. .|+++|+++.|+......++..++|.+
T Consensus 85 ~~~~~~a-------------~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 85 SLAAAFS-------------PTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHHHc-------------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877664 4444445544444444433 233333333454 478999999999999999999999999
Q ss_pred hhhHHhhccc-hhHHHHHHHHHH
Q 043907 305 FLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 305 ~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
.+.+.++.+| +.|++...++++
T Consensus 151 gg~l~~~~gwr~~f~i~~~~~~~ 173 (495)
T PRK14995 151 GGILLEHFYWGSVFLINVPIVLV 173 (495)
T ss_pred HHHhhccCChHHHHHHHHHHHHH
Confidence 9999999886 566665544443
No 123
>PRK10504 putative transporter; Provisional
Probab=99.52 E-value=4.2e-13 Score=114.82 Aligned_cols=162 Identities=18% Similarity=0.090 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
++...+..+...........+.|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3344445555555566777889999999999999888 788888889999999999999999999999888777777666
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
..... ++.+.......+.+.+.+. ..+....++.|.+|+++|+++.|+.+....++..++|.+.+.
T Consensus 91 ~~~~~-------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 156 (471)
T PRK10504 91 FCALS-------------GTLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL 156 (471)
T ss_pred HHHHh-------------CCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 54432 3333344444444444443 234556666899999999999999999999999999999999
Q ss_pred HHhhccc-hhHHHHHHHH
Q 043907 308 MLCHFKA-GIFFFFGGLV 324 (330)
Q Consensus 308 ~~~~~g~-~~~~~~~~~~ 324 (330)
+.+..+| +.|.+...++
T Consensus 157 l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 157 LVEYASWHWIFLINIPVG 174 (471)
T ss_pred HHhhccHHHHHHHHHHHH
Confidence 9998885 5565544433
No 124
>PRK03699 putative transporter; Provisional
Probab=99.52 E-value=5.7e-13 Score=111.20 Aligned_cols=167 Identities=8% Similarity=-0.001 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907 144 RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 223 (330)
+++..+...+..+.............|.+.+++|+++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555444456667778888899999999988 88888999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907 224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ 303 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 303 (330)
++.+..... ++.+.......+.+.+.+.... ....++.|.+|+++|+.+.+..+....+++.++|.
T Consensus 84 i~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 149 (394)
T PRK03699 84 LAVAGLMFS-------------HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI 149 (394)
T ss_pred HHHHHHHHc-------------chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 777666543 2333344444444444443333 34556689999999999999988888888999999
Q ss_pred hhhhHHhh-ccc-hhHHHHHHHHH
Q 043907 304 TFLPMLCH-FKA-GIFFFFGGLVL 325 (330)
Q Consensus 304 ~~~~~~~~-~g~-~~~~~~~~~~~ 325 (330)
+.+.+.+. .+| +.|.+.+++.+
T Consensus 150 ~~~~l~~~~~gw~~~f~~~~~~~~ 173 (394)
T PRK03699 150 IAAYLLARSIEWYWVYACIGLVYV 173 (394)
T ss_pred HHHHHHhccccHHHHHHHHHHHHH
Confidence 98887653 565 45555555443
No 125
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.52 E-value=7.2e-13 Score=111.24 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=120.3
Q ss_pred chhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907 144 RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 223 (330)
.++.+....+..+.............|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33445555566666666667777778888899999999999 89999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907 224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ 303 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 303 (330)
++.+..... ++.+.......+.+.+.+... +....++.|.+|+++|+++.++.+....++..+++.
T Consensus 89 ~~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 89 AGTLACGFA-------------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHHh-------------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 777766553 333444444444444444333 344566689999999999999999999999999999
Q ss_pred hhhhHHhhcc
Q 043907 304 TFLPMLCHFK 313 (330)
Q Consensus 304 ~~~~~~~~~g 313 (330)
+.+.+.+..+
T Consensus 155 l~~~l~~~~~ 164 (405)
T TIGR00891 155 VYSLVVPVWG 164 (405)
T ss_pred HHHHHHHhcC
Confidence 9998887765
No 126
>PRK11462 putative transporter; Provisional
Probab=99.51 E-value=4.2e-12 Score=107.65 Aligned_cols=116 Identities=10% Similarity=-0.030 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
.......+..+++.+++++++||+++|+....+.....+..+.+.+. +...........++.+.+.+ .
T Consensus 267 ~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~-~ 334 (460)
T PRK11462 267 AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-----------PMQASITMFVFIFVIGVLHQ-L 334 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------chhHHHHHHHHHHHHHHHHH-H
Confidence 45667778889999999999999999988765544433333332221 11222222222233332322 2
Q ss_pred cccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 266 WGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 266 ~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
..+..+.+.+|..+ .+..|...+.......++..+++.+.+.+.+..|
T Consensus 335 ~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 335 VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 23344555566544 2223444566668899999999999888876544
No 127
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.51 E-value=6.3e-13 Score=112.31 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
.....+..+.............|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 98 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG 98 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3444444544445555666677888889999999988 889999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
...+. ++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++......++..+++.+.+.
T Consensus 99 ~~~~~-------------~~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 99 LSGLA-------------SGVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHH-------------hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 76654 33444444444444444322 33445566899999999999999999999999999999988
Q ss_pred HHhhccch-hHHH
Q 043907 308 MLCHFKAG-IFFF 319 (330)
Q Consensus 308 ~~~~~g~~-~~~~ 319 (330)
+.+..+|. .+++
T Consensus 165 l~~~~~w~~~f~i 177 (426)
T PRK12307 165 FAEAYGWRAAFFV 177 (426)
T ss_pred HcccCCHHHHHHH
Confidence 88887863 4443
No 128
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.50 E-value=1.2e-12 Score=109.83 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=110.9
Q ss_pred HHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhhHhhHHHHHHHHHHHHH
Q 043907 155 FFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-GRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
.......++.+..++|.+++ +.|+++.+++ ...........++.+++|+++||+ |||+.+..+.++..++.+.+...
T Consensus 18 ~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 18 QIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 33344566777788888875 5799999988 888888888899999999999999 99999999998888887655431
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
+...............+.+.. .+....+++|.+|++ .|.++.++.++..++|+.++|.+.+.+.+
T Consensus 97 ------------~~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 97 ------------EIHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred ------------hcchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111122222222232222 233456678999875 69999999999999999999999999998
Q ss_pred hccc-hhHHHHH
Q 043907 311 HFKA-GIFFFFG 321 (330)
Q Consensus 311 ~~g~-~~~~~~~ 321 (330)
..|| ..|.+.+
T Consensus 164 ~~Gw~~~F~iaa 175 (493)
T PRK15462 164 EYSWAMGFGLAA 175 (493)
T ss_pred hhChHHHHHHHH
Confidence 8885 4555443
No 129
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.49 E-value=8.5e-13 Score=113.76 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 225 (330)
+.+....+..+.............|.+.+++|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+.....++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 98 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 344445555555555556666777888889999999888 8888899999999999999999999999999888888887
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907 226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF 305 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 305 (330)
.+...+. .+.+...+...+.+.+.+ +..+....++.|.+|+++|+++.++.+....++..+++.+.
T Consensus 99 ~~~~~~~-------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 99 TLACGFA-------------PGYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776653 333334444444443333 22334455668999999999999999999999999999999
Q ss_pred hhHHhhccchh
Q 043907 306 LPMLCHFKAGI 316 (330)
Q Consensus 306 ~~~~~~~g~~~ 316 (330)
+.+.+..+|..
T Consensus 165 ~~l~~~~~w~~ 175 (496)
T PRK03893 165 SLVVPVWGWRA 175 (496)
T ss_pred HHHhccCCHHH
Confidence 99988888643
No 130
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.49 E-value=1e-12 Score=109.71 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 225 (330)
|.+.+..........+.+......|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~ 81 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA 81 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence 344455555555556667777788999999999998888 8888999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907 226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF 305 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 305 (330)
....... ++.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.
T Consensus 82 ~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 82 SLLCSLA-------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHHh-------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666543 22333333333333333322 234456678999999999999999999999999999998
Q ss_pred hhHHhhccc-hhHHHHHHHHHH
Q 043907 306 LPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 306 ~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
+.+.+..+| ..+++.+++.++
T Consensus 148 ~~l~~~~g~~~~~~~~~~~~~i 169 (392)
T PRK10473 148 HLIMLKFPWQSLFYTMAAMGIL 169 (392)
T ss_pred HHHHhCcChHHHHHHHHHHHHH
Confidence 888777775 456665554443
No 131
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.49 E-value=4.9e-13 Score=114.97 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
+..+.+..+.............|.+.+++|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3344455555555666777788999999999999888 899999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
..... ++.+.......+.+.+.+ ...+....++.|.+|+++|+++.++......++..++|.+.+.
T Consensus 83 ~~~~~-------------~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 83 LCGVA-------------PNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HHhCc-------------CCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 66543 333444444444444433 3344556777899999999999999999999999999999999
Q ss_pred HHhhccc-hhHHHHHHHH
Q 043907 308 MLCHFKA-GIFFFFGGLV 324 (330)
Q Consensus 308 ~~~~~g~-~~~~~~~~~~ 324 (330)
+.++.+| +.|++.+.++
T Consensus 149 l~~~~~w~~~f~~~~~~~ 166 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIG 166 (485)
T ss_pred hccCcCceehhhhhhHHH
Confidence 9988885 5555544333
No 132
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.48 E-value=6.4e-13 Score=113.32 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=108.4
Q ss_pred HHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907 153 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
..++.............|.+.+++|++..+.+ ...+...++..++.++.|+++||+|||+.+..+.+..+++.+.....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 121 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445556667888899999999888 77888888999999999999999999999988887777776665553
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh--
Q 043907 233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC-- 310 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 310 (330)
.+.+...+...+.+.+.+ ...+ ...+++|.+|+++|+++.|+.+....+++.+++.+.+.+.+
T Consensus 122 -------------~s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~ 186 (476)
T PLN00028 122 -------------SSATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI 186 (476)
T ss_pred -------------cCHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333333322 2222 23456899999999999999988888888877776655432
Q ss_pred --h-----ccc-hhHHHHHHHHHH
Q 043907 311 --H-----FKA-GIFFFFGGLVLI 326 (330)
Q Consensus 311 --~-----~g~-~~~~~~~~~~~~ 326 (330)
. .|| +.|++.++++++
T Consensus 187 ~~~~~~~~~gWr~~f~i~g~l~l~ 210 (476)
T PLN00028 187 KDAGAPSFTAWRIAFFVPGLLHII 210 (476)
T ss_pred HhcCCcchhhhHHHHHHHHHHHHH
Confidence 1 355 566666655544
No 133
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.47 E-value=1.5e-12 Score=109.29 Aligned_cols=158 Identities=15% Similarity=0.009 Sum_probs=116.7
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG 230 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 230 (330)
.....+.............|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 98 (406)
T PRK11551 20 CFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMG-WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 3333334444445566677888899999999999 899999999999999999999999999999998877777665554
Q ss_pred HHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 231 SIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
.. .+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+
T Consensus 99 ~~-------------~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (406)
T PRK11551 99 QA-------------WDFPSLLVARLLTGVGLGGA-LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG 164 (406)
T ss_pred Hh-------------ccHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 43 33344444444444444433 23445667899999999999999999999999999988887777
Q ss_pred hccc-hhHHHHHHH
Q 043907 311 HFKA-GIFFFFGGL 323 (330)
Q Consensus 311 ~~g~-~~~~~~~~~ 323 (330)
..+| ..+++.+++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (406)
T PRK11551 165 DAAWRHIFYVGGVG 178 (406)
T ss_pred ccCHHHHHHHHHHH
Confidence 7775 455554433
No 134
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.47 E-value=1.2e-12 Score=109.78 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=113.0
Q ss_pred hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907 162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
......-+|.+.++++.+..+.. ...+...++..++.++.|+++||+|||+++..+..+..++.+.....
T Consensus 32 ~~~~~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------- 101 (413)
T PRK15403 32 TDLIQPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--------- 101 (413)
T ss_pred HHhhccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---------
Confidence 34444455677788999999888 88899999999999999999999999999999888887777666553
Q ss_pred CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907 242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 320 (330)
++.+..++...+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..|| +.|++.
T Consensus 102 ----~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 102 ----TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred ----CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 333344444444443333 22334456668999999999999999999999999999999998888786 566665
Q ss_pred HHHHHH
Q 043907 321 GGLVLI 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
+++.++
T Consensus 177 ~~~~~i 182 (413)
T PRK15403 177 AVMGLI 182 (413)
T ss_pred HHHHHH
Confidence 555443
No 135
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.45 E-value=2.1e-12 Score=107.35 Aligned_cols=161 Identities=10% Similarity=-0.062 Sum_probs=121.0
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG 230 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 230 (330)
.....+.............|.+.+++|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+.+++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 3333343444445666778888899999999988 899999999999999999999999999999999988888877766
Q ss_pred HHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 231 SIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
.. ++.+...+...+.+.+.+... +.....+.|.+|+++|+++.+.......++..+++.+.+.+.+
T Consensus 87 ~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 87 LS-------------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred Hh-------------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 54 334444444444444433322 3334556789999999999999998889999999999999888
Q ss_pred hccc-hhHHHHHHHHHH
Q 043907 311 HFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 311 ~~g~-~~~~~~~~~~~~ 326 (330)
..+| +.|++.+.+.++
T Consensus 153 ~~gwr~~f~~~~~~~~~ 169 (382)
T PRK10091 153 EFSWRYTFLLIAVFNIA 169 (382)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 8885 566665554433
No 136
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.44 E-value=2.4e-12 Score=106.43 Aligned_cols=155 Identities=16% Similarity=0.119 Sum_probs=115.3
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
.+........|.+.++.+.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+........
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---- 87 (365)
T TIGR00900 13 IGTAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL---- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 3345555666778888888888888 89999999999999999999999999999998888777776665554210
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHH
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFF 318 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 318 (330)
+..+.+.......+.+.+.+. ..+....++.|.+|+++|++..++.+....++..++|.+.+.+.+..+| ..++
T Consensus 88 ----~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 88 ----GGLNIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 111344444444444444333 3345566778999999999999999999999999999999999988885 4455
Q ss_pred HHHHHH
Q 043907 319 FFGGLV 324 (330)
Q Consensus 319 ~~~~~~ 324 (330)
+.+...
T Consensus 163 ~~~~~~ 168 (365)
T TIGR00900 163 VDAVGF 168 (365)
T ss_pred HHHHHH
Confidence 444433
No 137
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.44 E-value=4.5e-12 Score=104.25 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=120.0
Q ss_pred HHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHH
Q 043907 157 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQ 236 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
.............|.+.++.|.++.+.+ ...+...+...++.++.|++.||+|||+.+..+.....++.+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~---- 84 (352)
T cd06174 10 LSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---- 84 (352)
T ss_pred HHHHhhhhhHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----
Confidence 3344556677778888888899999988 89999999999999999999999999999999988888887776653
Q ss_pred hCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-h
Q 043907 237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-G 315 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 315 (330)
++.+.......+.+.+.+.. .+....+..|.+|+|+|++..++.+....++..+++.+.+.+.+..++ .
T Consensus 85 ---------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (352)
T cd06174 85 ---------SSLWLLLVGRFLLGLGGGAL-YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRW 154 (352)
T ss_pred ---------ccHHHHHHHHHHHHcccccc-cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444455555555554433 344556678999999999999999999999999999999999988774 4
Q ss_pred hHHHHHHHHH
Q 043907 316 IFFFFGGLVL 325 (330)
Q Consensus 316 ~~~~~~~~~~ 325 (330)
.+++.+.+.+
T Consensus 155 ~~~~~~~~~~ 164 (352)
T cd06174 155 LFLILAILGL 164 (352)
T ss_pred HHHHHHHHHH
Confidence 4554444433
No 138
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.44 E-value=1.6e-12 Score=106.91 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=117.6
Q ss_pred hhhHhHHHhHH-HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907 160 TGINIVGLYSP-VLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG 238 (330)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
.+........| .+.+++|.++.+.+ +..+...+...++.++.|+++||+|||+.+..+..+..++.+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------ 82 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------ 82 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------
Confidence 34455566667 66688899999999 89999999999999999999999999999999988888884444432
Q ss_pred CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhH
Q 043907 239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIF 317 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 317 (330)
++.+...+...+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+| ..+
T Consensus 83 -------~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~ 154 (352)
T PF07690_consen 83 -------SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF 154 (352)
T ss_dssp -------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred -------hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence 233344444455544443 33445566778999999999999999999999999999999999888885 567
Q ss_pred HHHHHHHHHh
Q 043907 318 FFFGGLVLIM 327 (330)
Q Consensus 318 ~~~~~~~~~~ 327 (330)
++.++++++.
T Consensus 155 ~~~~~~~~~~ 164 (352)
T PF07690_consen 155 LISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHH
T ss_pred ccccchhhhh
Confidence 7766666554
No 139
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.44 E-value=5.6e-12 Score=107.28 Aligned_cols=159 Identities=10% Similarity=0.102 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhHhHHHhHHHHHHh---cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHH
Q 043907 149 MAILIPFFQQVTGINIVGLYSPVLFRT---LKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLV 224 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~ 224 (330)
.......+..-.+++....++|.++++ +|++..+.+ .......+...++.+++|+++|| +|||+.+..+..+..+
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence 334444444456667778888888754 799999999 88999999999999999999999 8999999999998888
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh---hhhhhhHHHHHHHHHHHHH
Q 043907 225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI---RSAGQSITVAVNFVFTFLT 301 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~~~~~~ 301 (330)
+.+.+... .+.+.......+.+.+.+. ..+....+++|.+|+++ |+++.++.+...++|+.++
T Consensus 92 g~~~~~~~-------------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 92 GHFMLAMS-------------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHhc-------------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 88776653 2222233333333333332 33444566678887654 8899999999999999999
Q ss_pred HHhhhhHHhhccc-hhHHHHHH
Q 043907 302 AQTFLPMLCHFKA-GIFFFFGG 322 (330)
Q Consensus 302 ~~~~~~~~~~~g~-~~~~~~~~ 322 (330)
|.+.+.+.++.+| ..|.+.++
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHH
Confidence 9999999988885 45555443
No 140
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.43 E-value=7.8e-12 Score=105.11 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=112.7
Q ss_pred HHHHHhhhhHhHHHhHHHHHHhcCCCCchh-----hHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 154 PFFQQVTGINIVGLYSPVLFRTLKLGESTS-----LLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
..+....+......+.|.+.++.|.+..+. + ...+...+...++.++.|+++||+|||+.+..+.....++.+.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 100 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSG-LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL 100 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence 333344555666778888888888886543 5 6778888899999999999999999999999888777777665
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
+... ++.+...+...+.+.+. +..+....++.|..|+++|+++.++.+....++..+++.+.+.+
T Consensus 101 ~~~~-------------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 101 MGLA-------------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred HHHH-------------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 22333333333333322 22344445567889999999999999999999999999999999
Q ss_pred Hhhccc-hhHHHHHHHHHH
Q 043907 309 LCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 309 ~~~~g~-~~~~~~~~~~~~ 326 (330)
.+..+| ..+++.+++.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~ 184 (408)
T PRK09874 166 ADSYGLRPVFFITASVLFL 184 (408)
T ss_pred HHHhCHHHHHHHHHHHHHH
Confidence 888885 456655554443
No 141
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.43 E-value=2.6e-12 Score=105.56 Aligned_cols=148 Identities=10% Similarity=-0.058 Sum_probs=106.2
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
..+....|.+.+++|.++.+.+ +..+...++..++++..|+++||+|||+++.........+. .....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~---------- 75 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD---------- 75 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH----------
Confidence 4455677888899999999998 88899999999999999999999999987654433333322 11111
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccch-hHHHHH
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG-IFFFFG 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 321 (330)
..+.........+.+.+.+. .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.++.||. .|++.+
T Consensus 76 --~~~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 76 --PFNYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred --hccHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 02334444444554444432 2222334479999999999999999999999999999999999888874 555556
Q ss_pred HHHHH
Q 043907 322 GLVLI 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
++.++
T Consensus 152 ~l~~~ 156 (368)
T TIGR00903 152 AVAAA 156 (368)
T ss_pred HHHHH
Confidence 55544
No 142
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.43 E-value=1.9e-12 Score=108.28 Aligned_cols=149 Identities=18% Similarity=0.062 Sum_probs=116.9
Q ss_pred hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907 162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
........|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.......
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 79 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--------- 79 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---------
Confidence 34555667788888999999999 99999999999999999999999999999999888888777776654
Q ss_pred CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907 242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 320 (330)
.+.+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+| +.|++.
T Consensus 80 ----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 80 ----GAYVSLYILRVLLGAAEAP-FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred ----cCHHHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3344444454555544433 3345566778999999999999999999999999999999998888885 455555
Q ss_pred HHHHH
Q 043907 321 GGLVL 325 (330)
Q Consensus 321 ~~~~~ 325 (330)
+++.+
T Consensus 155 ~~~~~ 159 (399)
T TIGR00893 155 GVLGI 159 (399)
T ss_pred HHHHH
Confidence 44443
No 143
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.42 E-value=4.4e-12 Score=106.81 Aligned_cols=154 Identities=14% Similarity=0.036 Sum_probs=109.2
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
.+........|.+.++.+.++.+.+ ...+...+...+++++.|+++||+|||+.+..+..+.+++...+......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~---- 105 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL---- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc----
Confidence 3445566677888888888888888 89999999999999999999999999999888877776665554432110
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHH
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFF 318 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 318 (330)
..++.+.......+.+.+.+... +....++.|..|+++|+++.++.+....++..+++.+.+.+.+..++ +.++
T Consensus 106 ----~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 106 ----PEPSLLAIYLLGLWDGFFGSLGV-TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 11222333333333333333222 23345568999999999999999999999999999999999887774 4444
Q ss_pred HHHHH
Q 043907 319 FFGGL 323 (330)
Q Consensus 319 ~~~~~ 323 (330)
+.++.
T Consensus 181 ~~~~~ 185 (417)
T PRK10489 181 LAAAG 185 (417)
T ss_pred HHHHH
Confidence 44333
No 144
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.42 E-value=6.1e-12 Score=105.56 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=112.3
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..........|.+.+++|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------- 98 (406)
T PRK15402 27 IANDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------- 98 (406)
T ss_pred hhhhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 3444455566777889999998888 88889999999999999999999999999998888877777665543
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHH
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFF 318 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 318 (330)
++.+.......+.+.+.+. ..+.....+.|.+|+++|.+..++......++..++|.+.+.+.+..+| +.++
T Consensus 99 ------~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~ 171 (406)
T PRK15402 99 ------QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV 171 (406)
T ss_pred ------ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 2233333333333333332 2234456668999999999999998888888889999999998887775 5666
Q ss_pred HHHHHHHH
Q 043907 319 FFGGLVLI 326 (330)
Q Consensus 319 ~~~~~~~~ 326 (330)
+.++++++
T Consensus 172 ~~~~~~~~ 179 (406)
T PRK15402 172 LFAALAAL 179 (406)
T ss_pred HHHHHHHH
Confidence 65655544
No 145
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.42 E-value=5.1e-12 Score=105.04 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
+.......+.............|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G-~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVG-VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556667778889999999999999999 999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
..... ++.+...+...+.+.+.+.. .+.....+.|..|+++|+++.+..+....+|..+++.+.+.
T Consensus 87 ~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 87 GLGLM-------------VGFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66553 33444444444444443322 23323334577888999999999999999999999999998
Q ss_pred HHhhc
Q 043907 308 MLCHF 312 (330)
Q Consensus 308 ~~~~~ 312 (330)
+.+..
T Consensus 153 l~~~~ 157 (381)
T PRK03633 153 VSTEL 157 (381)
T ss_pred ccccc
Confidence 87654
No 146
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.42 E-value=7.8e-12 Score=104.51 Aligned_cols=149 Identities=14% Similarity=0.066 Sum_probs=109.4
Q ss_pred hhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC
Q 043907 161 GINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.........|.+.+++|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 23 ~~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------- 93 (394)
T PRK11652 23 AQTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------- 93 (394)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 334444557888899999999999 88999999999999999999999999999998887777776665442
Q ss_pred CCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHH
Q 043907 241 GGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFF 319 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~ 319 (330)
++.+.......+.+.+.+. ..+....+..|.++.++++.+.+..+....++..++|.+.+.+.+..|| ..|++
T Consensus 94 -----~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 94 -----HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred -----ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 2233333333333333322 2234445567888889999999999988889999999999998887785 45555
Q ss_pred HHHHH
Q 043907 320 FGGLV 324 (330)
Q Consensus 320 ~~~~~ 324 (330)
.+++.
T Consensus 168 ~~~~~ 172 (394)
T PRK11652 168 LLLLG 172 (394)
T ss_pred HHHHH
Confidence 44433
No 147
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.42 E-value=5.5e-12 Score=107.07 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=109.2
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.....+.|.+.+++|.+..+.+ +..+...+...++.++.|+++||+|||+.++.+..+..++.+.....
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 104 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETA-WISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS---------- 104 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHH-HHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh----------
Confidence 3456678888899999999988 88888888889999999999999999999998888777777666553
Q ss_pred CCcchhHHHHHHH-HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907 243 CSEGYAYLILVLV-CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 320 (330)
.+.+...... .+.+.+.+....+ ...++.|.+| ++|+++.|+.+....++..++|.+.+.+.+..|| +.|++.
T Consensus 105 ---~~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 105 ---SNVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred ---hhHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 2222222221 2333333332232 3345567776 7899999999999999999999999999998886 667766
Q ss_pred HHHHHH
Q 043907 321 GGLVLI 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
+++.++
T Consensus 180 ~~~~~~ 185 (455)
T TIGR00892 180 GGLLLH 185 (455)
T ss_pred HHHHHH
Confidence 665543
No 148
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.42 E-value=3.8e-12 Score=105.84 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=107.9
Q ss_pred cchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHH
Q 043907 143 YRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQ 221 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 221 (330)
.-++.+....+.+...+..-.......+.+.+ ++|+++++.+ +..+...+...++++..|++.||+|.|+++..+..+
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 33455655666665555554555555555555 7999999999 888889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHH
Q 043907 222 MLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLT 301 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 301 (330)
..+..+...+.... ..++.+..++...+.+.+ +..+. .....+++.+|+++||++.|+....+++|..+.
T Consensus 110 ~~i~~~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~ 179 (462)
T PRK15034 110 LIIPCVWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVM 179 (462)
T ss_pred HHHHHHHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence 88777766653100 012333344444444433 33333 445566899999999999999977777777776
Q ss_pred HHhhhhHH
Q 043907 302 AQTFLPML 309 (330)
Q Consensus 302 ~~~~~~~~ 309 (330)
+.+.+.+.
T Consensus 180 ~~l~p~~i 187 (462)
T PRK15034 180 QLVAPLVI 187 (462)
T ss_pred HHHHHHHH
Confidence 66665543
No 149
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.41 E-value=1.2e-10 Score=98.00 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc--ch-----hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHh
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGR--KV-----LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (330)
+..++..+..++.+++..++-.|..| |. =+..++++++++.+.+.+.... .++ ....+.++.+....+.
T Consensus 312 ~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~--~~~--~~~~s~~wl~~~~~~~ 387 (493)
T PRK15462 312 MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARW--SAM--YGHSSLPLMVLGLAVM 387 (493)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCcCHHHHHHHHHHH
Confidence 56677788888888888888777633 21 1456777777776666543321 111 1123344444444444
Q ss_pred hcccccccccccccccccccchhhhhhhhhHHHHHH-HHHHHHHHHhhhhH
Q 043907 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN-FVFTFLTAQTFLPM 308 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~~~ 308 (330)
.. .....+|+....++++.|++.||+.+|...... .+++.++..+.+..
T Consensus 388 t~-gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 388 GF-AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HH-HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 356778888888899999999999999986533 46666666555544
No 150
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.41 E-value=6.7e-12 Score=106.67 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=100.6
Q ss_pred HHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907 165 VGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS 244 (330)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|.+.++ |.+..+.+ ...+...++..++.++.|+++||+|||+++..+..+.+++.+.+.+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence 45566777776 99999998 8899999999999999999999999999999998888877776655310 0
Q ss_pred cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh-hhHHhhccc-hhHHHHHH
Q 043907 245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF-LPMLCHFKA-GIFFFFGG 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~ 322 (330)
..+.+.......+.+.+.+....+. ...+.|.+|+++|+++.++.+....+++.+.+++. ..+....+| ..|++.++
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHH-HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1122333333333343444333333 33457889999999999999888888875544443 233333354 45555544
Q ss_pred HHH
Q 043907 323 LVL 325 (330)
Q Consensus 323 ~~~ 325 (330)
+++
T Consensus 196 ~~~ 198 (452)
T PRK11273 196 AAI 198 (452)
T ss_pred HHH
Confidence 433
No 151
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.41 E-value=1.3e-11 Score=105.17 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=111.3
Q ss_pred HHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHH
Q 043907 155 FFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
.+..-.+++....+++.++ +++|++..+.. +..........+..+++|+++|| +|||+.+..+.++..++.+.+.+.
T Consensus 23 ~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~ 101 (489)
T PRK10207 23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS 101 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3334456677777777666 56899988888 77777777778888899999999 999999999999999988877753
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
. ...........+.+.+.+.. .|....++.|.+|++ .|+.+.++.+...++|..++|.+.+.+.+
T Consensus 102 ~------------~~~~ll~~~~~l~~ig~g~~-~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 102 L------------LKPDLIFIALGTIAVGNGLF-KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred c------------cchhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222333333333333 334456778999877 45788999999999999999999999999
Q ss_pred hccc-hhHHHH
Q 043907 311 HFKA-GIFFFF 320 (330)
Q Consensus 311 ~~g~-~~~~~~ 320 (330)
+.|| +.|++.
T Consensus 169 ~~gw~~~F~i~ 179 (489)
T PRK10207 169 KFGYSVTYNLC 179 (489)
T ss_pred hhChHHHHHHH
Confidence 9996 455553
No 152
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.39 E-value=3.5e-12 Score=106.04 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=113.3
Q ss_pred hhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC
Q 043907 161 GINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.........|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 80 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------- 80 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--------
Confidence 345566677888888999999999 89999999999999999999999999999999988888887777654
Q ss_pred CCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH-hhhhHHhhccc-hhHH
Q 043907 241 GGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ-TFLPMLCHFKA-GIFF 318 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~-~~~~ 318 (330)
.+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++. +.+.+.+..+| ..++
T Consensus 81 -----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 -----TSLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred -----hhHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 33444444444444444433 3455667789999999999999999999999999994 55555566665 4555
Q ss_pred HHHHHH
Q 043907 319 FFGGLV 324 (330)
Q Consensus 319 ~~~~~~ 324 (330)
+.+++.
T Consensus 155 ~~~~~~ 160 (379)
T TIGR00881 155 VPGIIA 160 (379)
T ss_pred HHHHHH
Confidence 555443
No 153
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.39 E-value=1.2e-11 Score=103.63 Aligned_cols=160 Identities=13% Similarity=-0.086 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 150 AILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
...+..+....+.......+|.+. ++.|.++.+.+ +..+...+...+++++.|+++||+|||+++..+.....++.+.
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAG-LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL 97 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence 344444444455566666777655 67899999999 9999999999999999999999999999999988877776555
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
........ +....+....++...+.+.+.+.. .+....+..|..|+++|+++.++.......+..+++.+.+.+
T Consensus 98 ~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 98 YLLAGLLA-----AWPVLSLLLLLLGRLLLGIGESLA-GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHhhhhh-----ccchhHHHHHHHHHHHHHhhHHhh-cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 44331100 000011223333334444443322 334445557899999999999998888888889999999999
Q ss_pred Hhhccchh
Q 043907 309 LCHFKAGI 316 (330)
Q Consensus 309 ~~~~g~~~ 316 (330)
.+..||..
T Consensus 172 ~~~~g~~~ 179 (399)
T PRK05122 172 YHWGGLAG 179 (399)
T ss_pred HHcccHHH
Confidence 88888643
No 154
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.39 E-value=9.5e-12 Score=103.66 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.......+...++.+.++.+.+ +..+...+...+..++.|+++||+|||+++..+..+..++.+.+...
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---------- 88 (393)
T PRK11195 20 NALLFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---------- 88 (393)
T ss_pred HHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH----------
Confidence 3344445556678888888878 88899999999999999999999999999999988887766654432
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
.+. .....+.+.+ .....|....++.|.+|+++|++++|+.+.....+..++|.+.+.+.+..
T Consensus 89 ---~~~---~~~r~l~G~~-~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~ 151 (393)
T PRK11195 89 ---IHP---LLAYGLVGIG-AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH 151 (393)
T ss_pred ---HHH---HHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2222233333 23445666777899999999999999999999999999999999998864
No 155
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.39 E-value=1.6e-11 Score=102.86 Aligned_cols=145 Identities=15% Similarity=0.035 Sum_probs=103.3
Q ss_pred HhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh
Q 043907 158 QVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
...+......+.+.+.++.|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.+.......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~--- 100 (402)
T TIGR00897 25 FMTGDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL--- 100 (402)
T ss_pred HHHhhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 334444555677778888999999999 8999999999999999999999999999999988888777654432110
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHH-HHHHHhhhhHHhhcc
Q 043907 238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFT-FLTAQTFLPMLCHFK 313 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g 313 (330)
...+.+.......+.+.+.+.. .+.....+.|.+|+++|+++.|+.++...++. ..++.+.+.+.+..|
T Consensus 101 ------~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 101 ------GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred ------cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1122333333333333333322 22233445688899999999999999988886 578888888887777
No 156
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.39 E-value=1.6e-11 Score=102.59 Aligned_cols=150 Identities=14% Similarity=0.070 Sum_probs=111.7
Q ss_pred hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907 160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG 238 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
.+......+.+.++ ++.|++..+.+ +..+...+...+..++.|+++||+|||+.+..+.....++.+.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------ 96 (400)
T PRK11646 24 LGFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------ 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------
Confidence 44455555666555 67899999999 88888889999999999999999999999999988888887776543
Q ss_pred CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhH
Q 043907 239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIF 317 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 317 (330)
++.+.......+.+.+.+ ...|....++.|.+|+++|+++.|+.+....++..++|.+.+.+. ..+| +.|
T Consensus 97 -------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f 167 (400)
T PRK11646 97 -------HEPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVC 167 (400)
T ss_pred -------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence 333334444444333332 223444556689999999999999999999999999999999988 5674 556
Q ss_pred HHHHHHHH
Q 043907 318 FFFGGLVL 325 (330)
Q Consensus 318 ~~~~~~~~ 325 (330)
++.+.+++
T Consensus 168 ~~~~~~~~ 175 (400)
T PRK11646 168 ATGAVLFV 175 (400)
T ss_pred HHHHHHHH
Confidence 65554443
No 157
>PRK12382 putative transporter; Provisional
Probab=99.37 E-value=1.1e-11 Score=103.46 Aligned_cols=156 Identities=13% Similarity=-0.045 Sum_probs=106.9
Q ss_pred HHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907 154 PFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
..+....+........|.+. +++|.+..+.+ ...+...+...+++++.|+++||+|||+.+..+.....++.+.....
T Consensus 23 ~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g-~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 101 (392)
T PRK12382 23 AVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVG-IAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA 101 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhh
Confidence 33333344455555666654 67899999999 99999999999999999999999999999998877766554433221
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
... . .....+.+...+...+.+.+.+.. .+....++.|..|+++|+++.++.......+..++|.+.+.+.+..
T Consensus 102 ~~~---~--~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 102 AIL---P--VSAPFKFALLVVGRLILGFGESQL-LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred hcc---c--cchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 100 0 000122233334344444443322 2333455578999999999999999888899999999999988888
Q ss_pred cchh
Q 043907 313 KAGI 316 (330)
Q Consensus 313 g~~~ 316 (330)
||..
T Consensus 176 g~~~ 179 (392)
T PRK12382 176 GFAA 179 (392)
T ss_pred ChHH
Confidence 8643
No 158
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.37 E-value=6e-12 Score=107.43 Aligned_cols=155 Identities=10% Similarity=-0.091 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
.+....+.+......-..+....|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+++..+.+..++..
T Consensus 30 i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 108 (467)
T PRK09556 30 SYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELG-MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICM 108 (467)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHH
Confidence 33344444444333444455667888899999999999 89999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
+.++..... ..++.+...+...+.+.+.+... |....+++|.+|+++||++.|+.+....+|..+++.+..
T Consensus 109 ~~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 109 LGFGASLGS--------GSVSLGLMIALWALSGFFQSTGG-PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHhc--------ccchHHHHHHHHHHHHHHHhccc-hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 666553110 01334444444444554444444 344566789999999999999999999999999988887
Q ss_pred hHHhh
Q 043907 307 PMLCH 311 (330)
Q Consensus 307 ~~~~~ 311 (330)
.+.+.
T Consensus 180 ~~~~~ 184 (467)
T PRK09556 180 WGANY 184 (467)
T ss_pred HHHHh
Confidence 66654
No 159
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.36 E-value=8e-12 Score=103.88 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=114.4
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.......|.+.++.|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.......
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445667888888999999998 88899999999999999999999999999999888888887776653
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~ 321 (330)
++.+.......+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+| +.+++.+
T Consensus 77 ---~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 ---QTIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred ---ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 223333333444443333 22334456678999999999999999999999999999999999888885 5566555
Q ss_pred HHHHH
Q 043907 322 GLVLI 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.++++
T Consensus 153 ~~~~~ 157 (377)
T PRK11102 153 LAAIL 157 (377)
T ss_pred HHHHH
Confidence 54443
No 160
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.36 E-value=8.6e-12 Score=105.60 Aligned_cols=169 Identities=12% Similarity=0.046 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 225 (330)
+.+....+................|.+.+ .|.++++.+ +..+...++..++.++.|+++||+|||+.+..+..+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 34444444444333333334455666555 599999999 8999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907 226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF 305 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 305 (330)
.+....... ...+.........+.+.+.+..+.+. ...+.|.+|+++|+++.++.+....+++.+++.+.
T Consensus 105 ~~~~~~~~~---------~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 105 MLLMGFVPW---------ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHhcccc---------ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 666543210 00122222333333343444333333 44557999999999999999999999999998887
Q ss_pred hhHHhh-ccc-hhHHHHHHHHHH
Q 043907 306 LPMLCH-FKA-GIFFFFGGLVLI 326 (330)
Q Consensus 306 ~~~~~~-~g~-~~~~~~~~~~~~ 326 (330)
+...+. .+| ..|++.++++++
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Confidence 765543 455 456555555443
No 161
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.36 E-value=3.2e-11 Score=98.95 Aligned_cols=153 Identities=11% Similarity=0.043 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST-SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV 224 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 224 (330)
..+..|...++..+= .......|.+.+++|+++++ .+ .+......+..+..++.|+++||+|.|+++..+.+..++
T Consensus 28 ~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344445555554432 23344567777899999999 77 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
..+++++. .+...+.+.-++++.+-+..+ ....++.+.+|+++|+++.|+.+....+|.++++++
T Consensus 105 ~t~L~~fa-------------~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 105 VWLLLLLG-------------TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888875 445566666677776666555 445666899999999999999999999999999999
Q ss_pred hhhHHhhccchhH
Q 043907 305 FLPMLCHFKAGIF 317 (330)
Q Consensus 305 ~~~~~~~~g~~~~ 317 (330)
.+. ...+||..|
T Consensus 170 ~ql-l~s~gWr~y 181 (511)
T TIGR00806 170 GQL-LVTLGWISY 181 (511)
T ss_pred HHH-HHhcCchhH
Confidence 999 556776443
No 162
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.36 E-value=3.1e-11 Score=99.98 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=106.7
Q ss_pred HHHHHHHhhhhHhHHHhHHH-HHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907 152 LIPFFQQVTGINIVGLYSPV-LFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG 230 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 230 (330)
.+..+..+........+.|. +.+++|+++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 7 WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 33344444555667778885 6688999999999 899999999999999999999999999999999888888877766
Q ss_pred HHHHHHhCCCCCCCcc-hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 231 SIMAAQLGDHGGCSEG-YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
.. + +.+...+...+.+.+. .... ....+++|.+|+++|+++.++......++..+++.+.+.+.
T Consensus 86 ~~-------------~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 86 LA-------------VQSYSVLLLLRLFIGIAG-GSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HH-------------hhhHHHHHHHHHHHHHhc-hhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 54 2 3333333434433332 2233 33456689999999999999998888888888877777665
Q ss_pred h
Q 043907 310 C 310 (330)
Q Consensus 310 ~ 310 (330)
+
T Consensus 151 ~ 151 (366)
T TIGR00886 151 G 151 (366)
T ss_pred H
Confidence 4
No 163
>PRK11043 putative transporter; Provisional
Probab=99.36 E-value=3.6e-11 Score=100.77 Aligned_cols=149 Identities=16% Similarity=0.102 Sum_probs=108.2
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
+......|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 91 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV---------- 91 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh----------
Confidence 3333444556788899999999 89999999999999999999999999999998887777766665543
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~ 321 (330)
++.+...+...+.+.+.+.. .+....++.|.+|+++++...+..+....++..++|.+.+.+.+..+| ..+++.+
T Consensus 92 ---~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 92 ---ESAAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred ---cCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 23333333333333332222 223345567999999899999988888889999999999999988886 4555555
Q ss_pred HHHHH
Q 043907 322 GLVLI 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
++.++
T Consensus 168 ~~~~~ 172 (401)
T PRK11043 168 AITLL 172 (401)
T ss_pred HHHHH
Confidence 44443
No 164
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.35 E-value=6.2e-11 Score=94.64 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
.+......+...++.-..+....+.+-+++|+++.|.. ++.....+...+.+++.|.+.||+|.|+....++++..+-.
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 33334444444444444555555666688999999999 99999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
+.+.+.. ..++.+..+.+..+.+.+ +..+ .....++++.+|+|++|++.|+.. .+++|..+...+.+
T Consensus 94 ~~~~~a~----------~~~~~~~ll~~gll~G~~-GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P 160 (417)
T COG2223 94 LGLAFAV----------TYPSTWQLLVIGLLLGLA-GASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP 160 (417)
T ss_pred HHHHHHc----------cCCchHHHHHHHHHHhcc-ccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence 8877763 112223444433333332 2222 344566789999999999999988 99999999999999
Q ss_pred hHHhhcc
Q 043907 307 PMLCHFK 313 (330)
Q Consensus 307 ~~~~~~g 313 (330)
.+....+
T Consensus 161 ~v~~~~g 167 (417)
T COG2223 161 LVAVAFG 167 (417)
T ss_pred HHHHHHh
Confidence 9988887
No 165
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.35 E-value=1.4e-11 Score=105.82 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=102.7
Q ss_pred HHHhHHHHHHhcCCC--------CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHH
Q 043907 165 VGLYSPVLFRTLKLG--------ESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQ 236 (330)
Q Consensus 165 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
.....|....+.+.+ ..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--- 122 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--- 122 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---
Confidence 333445444444444 67777 889999999999999999999999999999998888887777665431
Q ss_pred hCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh---hhHHhhcc
Q 043907 237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF---LPMLCHFK 313 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~g 313 (330)
.....+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+. ....+..+
T Consensus 123 -------~~~~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 194 (481)
T TIGR00879 123 -------FALSVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194 (481)
T ss_pred -------cccchHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 1122234444455555554433 335566778999999999999999999999999999988 55445556
Q ss_pred c-hhHHH
Q 043907 314 A-GIFFF 319 (330)
Q Consensus 314 ~-~~~~~ 319 (330)
| +.|++
T Consensus 195 w~~~f~~ 201 (481)
T TIGR00879 195 WRIPLGL 201 (481)
T ss_pred HHHHHHH
Confidence 5 34444
No 166
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.34 E-value=2.9e-11 Score=100.88 Aligned_cols=136 Identities=15% Similarity=-0.019 Sum_probs=109.4
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.......|.+.+++|++..+.+ +..+...++..++.++.|++.||+|||+++..+..+.+++.+...+.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----------
Confidence 4556678888999999999999 99999999999999999999999999999999999999999888764
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-cc
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-KA 314 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~ 314 (330)
++.+..+....+.+.+.+... +....++.|.+| ++|+.++|........+..+++.+.+.+.++. +|
T Consensus 95 ---~~~~~ll~~r~l~Gig~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w 162 (393)
T PRK09705 95 ---PQSALLLSSALLGGVGIGIIQ-AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW 162 (393)
T ss_pred ---cchHHHHHHHHHHHhHHHHHh-hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 334444455555555554333 333455678887 77999999999988899999999999888875 45
No 167
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.34 E-value=9.7e-12 Score=103.33 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=109.6
Q ss_pred hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907 162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
.+......|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--------- 88 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVA-IWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--------- 88 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH---------
Confidence 34566678888899999999999 99999999999999999999999999999999988888888776654
Q ss_pred CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907 242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 320 (330)
++.+.......+.+.+.+.... .......|.+| ++|+++.++......++..+++++.+.+.+..+| +.+++.
T Consensus 89 ----~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 89 ----DSLAALYLTYGLASAGVGIAYG-IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred ----HHHHHHHHHHHHHhHHHHHHHH-hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 3334344444444333332222 22334456676 5799999999988888888888888777777775 455555
Q ss_pred HHHHHH
Q 043907 321 GGLVLI 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
++++++
T Consensus 163 ~~~~~~ 168 (377)
T TIGR00890 163 GIIFLL 168 (377)
T ss_pred HHHHHH
Confidence 554433
No 168
>PRK15075 citrate-proton symporter; Provisional
Probab=99.34 E-value=4.9e-11 Score=100.91 Aligned_cols=151 Identities=16% Similarity=0.072 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHH-----HHHHHHHHHHHHHHHHHHhCcchhhhHhhH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVV-----AGGMGTVLAIISMILADKFGRKVLFLVGGM 220 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 220 (330)
+......+..+........+....|.+.++++.++.+......+. ..+...+++++.|++.||+|||+.++.+..
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 455666677777777778888899999999988776643122222 223335788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchh------HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHH
Q 043907 221 QMLVSQVIIGSIMAAQLGDHGGCSEGYA------YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN 294 (330)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 294 (330)
...++.+...+. ++... ...++...+.+.+.+..+. ....+++|.+|+++|+++.++.+...
T Consensus 95 ~~~~~~~l~~~~-----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~~~ 162 (434)
T PRK15075 95 IMASGTLLIAFV-----------PGYATIGLAAPLLVLLGRLLQGFSAGVELG-GVSVYLAEIATPGRKGFYTSWQSASQ 162 (434)
T ss_pred HHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHhhCCcccchHHHHHHHHHH
Confidence 888887777654 11110 1223333444444443333 33467789999999999999988887
Q ss_pred HHHHHHHHHhhhhH
Q 043907 295 FVFTFLTAQTFLPM 308 (330)
Q Consensus 295 ~~~~~~~~~~~~~~ 308 (330)
+++..+++.+.+.+
T Consensus 163 ~~g~~~g~~~g~~l 176 (434)
T PRK15075 163 QVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666554
No 169
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.33 E-value=7.1e-11 Score=101.22 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=106.5
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~ 228 (330)
.....+....+++....+++.++ +++|+++.+.. ..............++.|+++|| +|||+.+..+..+..++...
T Consensus 26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l 104 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL 104 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 33444444456677777888777 67899888877 66655555555556789999999 59999999998888887766
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
+.+. ............+.+.+.+. ..+....++.|.+|++ .|+.+.++.++..++|+.++|.+.+
T Consensus 105 ~~~~------------~~~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g 171 (500)
T PRK09584 105 VAWS------------GHDAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP 171 (500)
T ss_pred HHHh------------cccHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 6543 11222222323333333332 2334455668998754 3456788889999999999999999
Q ss_pred hHHhhccc-hhHHHHH
Q 043907 307 PMLCHFKA-GIFFFFG 321 (330)
Q Consensus 307 ~~~~~~g~-~~~~~~~ 321 (330)
.+.++.|| +.|.+.+
T Consensus 172 ~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 172 WLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHhhCHHHHHHHHH
Confidence 99998885 4555544
No 170
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.32 E-value=8.5e-11 Score=98.31 Aligned_cols=143 Identities=14% Similarity=0.044 Sum_probs=108.0
Q ss_pred HHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHH
Q 043907 155 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMA 234 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 234 (330)
++.............|.+.+++|.+..+.+ +..+...++..++++..|++.||+|||+.+..+..+.+++...+....
T Consensus 12 f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~- 89 (410)
T TIGR00885 12 FALWGFANDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA- 89 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333445555777888889999999999 999999999999999999999999999999999999888877654331
Q ss_pred HHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 235 AQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
..++.+.......+.+.+.+.... ....++.|..|+++|++..++.+....+|..+++.+.+.+.
T Consensus 90 ---------~~~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 90 ---------EIMNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred ---------hhccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012334444444555555443333 33445568889999999999999999999999999988775
No 171
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.31 E-value=3.4e-12 Score=102.73 Aligned_cols=165 Identities=16% Similarity=0.013 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
.+....+....+...-+.+..-.+..-+.+|.++...+ ++.+...+..++++++.|++.||+.||+++.+|..+..++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 33334444444444445555555666677899999999 99999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
+..++. .+.|...++-.+.+.|-+ ++.|+...+++|.+|..+|++.+++.+.....|+.++-....
T Consensus 113 ~~~~fs-------------~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 113 FASGFS-------------NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred HHHHHH-------------HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 888775 556667777777776655 666777888899999999999999999999999999888888
Q ss_pred hHHhhcc-c-hhHHHHHHHHHH
Q 043907 307 PMLCHFK-A-GIFFFFGGLVLI 326 (330)
Q Consensus 307 ~~~~~~g-~-~~~~~~~~~~~~ 326 (330)
.+.+..+ | +.|...+++.++
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi 200 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVI 200 (493)
T ss_pred eeccCccceEEEEEeehHHHHH
Confidence 8877776 4 455554444443
No 172
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.30 E-value=7.8e-11 Score=101.22 Aligned_cols=129 Identities=13% Similarity=0.020 Sum_probs=88.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907 177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC 256 (330)
Q Consensus 177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
+.++.+.+ +..+...++..++.++.|+++||+|||+++..+..+..++.+.......... .....+.......++...
T Consensus 51 ~~~~~~~~-~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 51 SAANSLLG-FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT-SIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred cCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc-cccccchhHHHHHHHHHH
Confidence 77777888 8899999999999999999999999999999998888777665543210000 000001111223334444
Q ss_pred HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
+.+.+.+ ...+....+++|.+|+++|+++.++.+....+|..+++.+...+
T Consensus 129 l~G~~~g-~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 129 IGGIGVG-LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred HHhhhHh-HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 33345566779999999999999999988888888876655433
No 173
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.30 E-value=2.5e-11 Score=103.67 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=104.1
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHH
Q 043907 175 TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL 254 (330)
Q Consensus 175 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+++++..+.+ ...+...++..++.++.|++.||+|||+.+..+.++..++.+...... ....+..++.
T Consensus 70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFC 137 (465)
T ss_pred CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHH
Confidence 5677888888 889999999999999999999999999999988887777766654331 0122334444
Q ss_pred HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-cc-hhHHHHHHHHH
Q 043907 255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-KA-GIFFFFGGLVL 325 (330)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~ 325 (330)
..+.+.+.+. ..|....+++|.+|+++|+++.++.+....++..+++.+.+.+.+.. +| ..|++.+++.+
T Consensus 138 r~~~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~ 209 (465)
T TIGR00894 138 RVIQGLAQGS-VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGC 209 (465)
T ss_pred HHHHHHhccc-chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHH
Confidence 4444444443 33455667789999999999999999999999999999999998884 75 45555555443
No 174
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.29 E-value=1.1e-10 Score=100.31 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch-hh---HH-HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST-SL---LL-SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQ 221 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~---~~-~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 221 (330)
......+..+........+....|.+-++++.+.+. .. .. ..+...++..++.++.|+++||+|||+++..+..+
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344445555555555566666667666666433322 11 01 23566688899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcchh------HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHH
Q 043907 222 MLVSQVIIGSIMAAQLGDHGGCSEGYA------YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 295 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 295 (330)
++++.++.++.. +... ......-.+.+.+.+..+ +....+++|.+|+++||...++......
T Consensus 97 ~~i~~~~~a~~~-----------~~~~~g~~a~~~l~~~R~l~G~g~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~ 164 (490)
T PRK10642 97 MSISTFCIGLIP-----------SYATIGIWAPILLLLCKMAQGFSVGGEY-TGASIFVAEYSPDRKRGFMGSWLDFGSI 164 (490)
T ss_pred HHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHHHHHhHhHhhH-HHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 999988887651 1111 113333444444444333 3456677899999999999998887777
Q ss_pred HHHHHHHHhhhhHH--------hhccc-hhHHHHHH
Q 043907 296 VFTFLTAQTFLPML--------CHFKA-GIFFFFGG 322 (330)
Q Consensus 296 ~~~~~~~~~~~~~~--------~~~g~-~~~~~~~~ 322 (330)
+|..+++.+...+. +.+|| +.|++.+.
T Consensus 165 ~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~ 200 (490)
T PRK10642 165 AGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALP 200 (490)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHH
Confidence 77777765554432 24576 45555433
No 175
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.27 E-value=1.4e-10 Score=98.03 Aligned_cols=169 Identities=11% Similarity=-0.058 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhhhHhHHHhHHHHHHhcC---CCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907 150 AILIPFFQQVTGINIVGLYSPVLFRTLK---LGEST---SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML 223 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 223 (330)
...+...........+....|.+.++++ .+..+ .. .......++..+++++.|+++||+|||+.+..+....+
T Consensus 26 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 104 (432)
T PRK10406 26 GASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTA-GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3334444444555566666677777764 33332 22 34455566677999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907 224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ 303 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 303 (330)
++.+..++.... ............++-.+.+.+.+.. .+....+++|.+|+++|++..++.+.....|..+++.
T Consensus 105 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 105 FGSLVIACLPGY-----ETIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 888877654100 0000011122334444444444433 3455677799999999999998877766666666665
Q ss_pred hhhhHH--------hhccch-hHHHHHHHHH
Q 043907 304 TFLPML--------CHFKAG-IFFFFGGLVL 325 (330)
Q Consensus 304 ~~~~~~--------~~~g~~-~~~~~~~~~~ 325 (330)
+...+. +.+||. .|++.++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~l 209 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAV 209 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHH
Confidence 544432 245664 5555444433
No 176
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.25 E-value=3.8e-09 Score=86.61 Aligned_cols=297 Identities=13% Similarity=0.053 Sum_probs=159.2
Q ss_pred cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAF--NIYMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
.++|+++|| .|+|+.+..+.++..+|.++.+.++ +...+.++-.+.++|.|..=+
T Consensus 79 i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt 158 (498)
T COG3104 79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFT 158 (498)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCcc
Confidence 578999999 5999999999999999999999884 788999999999999998766
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhh----ccCCcHHHHHHHHHH------
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKI----QRSDDHQKAQKMLQR------ 107 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~----~~~~~~~~a~~~~~~------ 107 (330)
+.+..||...|...++-....++..+..+..-.... .+.+...+.......
T Consensus 159 ~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (498)
T COG3104 159 LFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMIL 238 (498)
T ss_pred EEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHH
Confidence 566789999999888766665555544432110000 000001111100000
Q ss_pred ------HhcccchhHHHHHH--HHh----ccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH
Q 043907 108 ------IRGISDVKAELNDL--IRA----SSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR 174 (330)
Q Consensus 108 ------~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (330)
....+..+...... ... .+.....+. . +-.++ ...-+.++...+.+.........+..|.....+
T Consensus 239 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~ 316 (498)
T COG3104 239 AALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV-F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVN 316 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 00000000000000 000 000000000 0 10000 000011222222222222222333344433332
Q ss_pred h--cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc--h-----hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 043907 175 T--LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRK--V-----LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE 245 (330)
Q Consensus 175 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+ +|++-. .. +..+...+.-++.+++..++..|.+++ . -+-++..+++.+.+++....... .+ +...
T Consensus 317 ~~~~g~~vp-~~-~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~-~~--~~~~ 391 (498)
T COG3104 317 RQIFGFEVP-PA-WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF-GG--PSGL 391 (498)
T ss_pred ccccceecC-HH-HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh-cC--CCCC
Confidence 2 232222 22 466777777788888888888885443 1 13345555555555544432111 11 1122
Q ss_pred chhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907 246 GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL 306 (330)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 306 (330)
.+.++.+....+. .......+|+...+++...|++..+..++........+..++..+.+
T Consensus 392 ~s~~~lil~y~l~-s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 392 VSVWWLVLSYVLQ-SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred cCHHHHHHHHHHH-HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 3334333333333 34456777888888889999999999999988888888888777776
No 177
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.24 E-value=2.6e-10 Score=95.21 Aligned_cols=271 Identities=13% Similarity=0.168 Sum_probs=156.4
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
++..|.++||+|||..+.+......+..+...+.. +|.+. +.|+..+....
T Consensus 79 s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll 153 (463)
T KOG2816|consen 79 SPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLL 153 (463)
T ss_pred HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHH
Confidence 36789999999999999999999888888877766 33322 44444443322
Q ss_pred -----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907 57 -----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL 118 (330)
Q Consensus 57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (330)
.....|.-.+|.+..+..++..+. ..++||+-. ++.+ .+ ...++..
T Consensus 154 ~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~-~~---~~~~~~~--------- 217 (463)
T KOG2816|consen 154 SGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ---EKER-SD---ATLRELT--------- 217 (463)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC---cccc-cc---ccccccC---------
Confidence 222234445667766666665544 455888742 1111 10 0000000
Q ss_pred HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHH
Q 043907 119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTV 197 (330)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 197 (330)
............++...+....+..+..+....+..........-..+.+. ..+++++++.+ ...+.......+
T Consensus 218 ----~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s-~~~~~~~~~~~i 292 (463)
T KOG2816|consen 218 ----PGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS-DLLSLVSILGII 292 (463)
T ss_pred ----CCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH-HHHHHHHHHHHH
Confidence 000000001112222222122222222222222221111111110112222 35789999888 777888888888
Q ss_pred HHHHHH-HHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907 198 LAIISM-ILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE 276 (330)
Q Consensus 198 ~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 276 (330)
+..+.. .+...+|.|+....|.....+....+++. +..|......... .++....|...+..+.
T Consensus 293 ~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------~~~w~~~~~~v~~--~~~~~~~pa~~s~~s~ 357 (463)
T KOG2816|consen 293 SQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------TETWMMFAAGVVV--ALAGIVFPAIRAFASI 357 (463)
T ss_pred HHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------------ccchhhhHHHHHH--HhhcchhHHHHhHHHh
Confidence 887777 67778898998888888888888887775 3333333222222 2222334455666677
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
..+++++|+++++...+..+.+.++|.+.+.+...+
T Consensus 358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 358 LVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888999999999999999999999999998886543
No 178
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.21 E-value=3e-10 Score=94.38 Aligned_cols=152 Identities=13% Similarity=0.004 Sum_probs=100.1
Q ss_pred hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHh-hHHHHHHHHHHHHHHHHHh
Q 043907 160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVG-GMQMLVSQVIIGSIMAAQL 237 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~~~~~~~~~~~~~~~ 237 (330)
.+........|.++ ++.|.++.+.+ ...+...+...+..++.|+++||+|||+.++.. .....++.+.....
T Consensus 11 ~~~~~~~~~l~~~l~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~----- 84 (375)
T TIGR00899 11 IAGALQFPTLSLFLSEEVRARPAMIG-LFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN----- 84 (375)
T ss_pred HHHHHHhhHHHHHHHcccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-----
Confidence 34455556666665 57899999988 888888899999999999999999998876544 34434444444332
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhh--hhHHHHHHHHHHHHHHHhhhhHHhhccc-
Q 043907 238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAG--QSITVAVNFVFTFLTAQTFLPMLCHFKA- 314 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~- 314 (330)
++.+.......+.+... ....|....+..|..|++.|+.+ .+.......++..+++.+.+.+.+..+|
T Consensus 85 --------~~~~~l~~~~~~~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~ 155 (375)
T TIGR00899 85 --------RNYFLLLVLGVLLSSFA-STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFT 155 (375)
T ss_pred --------chHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccH
Confidence 22232332222222222 23344445555677776666644 5777777889999999999999888886
Q ss_pred hhHHHHHHHHHH
Q 043907 315 GIFFFFGGLVLI 326 (330)
Q Consensus 315 ~~~~~~~~~~~~ 326 (330)
..|++.+.+.++
T Consensus 156 ~~f~~~~~~~~~ 167 (375)
T TIGR00899 156 VMFLTAALAFVL 167 (375)
T ss_pred HHHHHHHHHHHH
Confidence 566666655443
No 179
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.21 E-value=4.9e-10 Score=96.63 Aligned_cols=122 Identities=20% Similarity=0.097 Sum_probs=88.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHh
Q 043907 179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258 (330)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (330)
++.+.+ ...+...++..++.++.|++.||+|||+.+..+.++..++.++..... +. .+..+....++...+.
T Consensus 54 ~~~~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~-----~~--~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 54 PSSVSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP-----GS--SPKSVMATLCFWRFWL 125 (502)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc-----Cc--ccchHHHHHHHHHHHH
Confidence 344555 788889999999999999999999999999988888888776655431 00 0001123444444555
Q ss_pred hcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
+.+.+... +....+++|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus 126 G~~~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 126 GVGIGGDY-PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHhhhh-HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333 355677899999999999999999999999888887776543
No 180
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=90.97 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcc
Q 043907 182 TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSG 261 (330)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (330)
-.+ .+.+.+++.+.+.++..|.++||+|||+++..+....++.....+.. .+. ..++..-+.++.
T Consensus 69 yaG-flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F-~afv~aR~l~Gi 133 (451)
T KOG2615|consen 69 YAG-FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNF-AAFVLARFLGGI 133 (451)
T ss_pred hhh-hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHHhhhh
Confidence 345 78889999999999999999999999999999998888877776653 222 333332333333
Q ss_pred cccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 262 YCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 262 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
+. +.-.+..++++|++++|+|+.+++..+....+|-.+||.+++++.+
T Consensus 134 ~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 134 FK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 33 3333567888999999999999999999999999999999999988
No 181
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.19 E-value=5.6e-10 Score=93.56 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=110.4
Q ss_pred HHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccch-hhhHhhHHHHHHHH
Q 043907 154 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKV-LFLVGGMQMLVSQV 227 (330)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~ 227 (330)
..+.+.........-+|.++++.|++.++.+ ........ .+..++.|+++||+ |||| .+..+....+++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3444556667777888999999999999998 66554443 68889999999999 7775 56766777766666
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
.+.+.. +..+.+.......+.. .......+....++.|..|+++|+++.++......++..+++.+.+.
T Consensus 84 ~l~~~~----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 84 AMAFCP----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHhcC----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 554431 1122333333323333 33334455666778899999999999999998888999999999988
Q ss_pred HHhhc-cc-hhHHHHHHHHHH
Q 043907 308 MLCHF-KA-GIFFFFGGLVLI 326 (330)
Q Consensus 308 ~~~~~-g~-~~~~~~~~~~~~ 326 (330)
+.+.. || ..|++.+++.++
T Consensus 153 l~~~~~gw~~~f~i~a~~~l~ 173 (402)
T PRK11902 153 LADRVLGWGNTYLLMAGLMLA 173 (402)
T ss_pred HHhcccCHHHHHHHHHHHHHH
Confidence 88854 66 455555554443
No 182
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.19 E-value=1.9e-10 Score=100.89 Aligned_cols=161 Identities=14% Similarity=-0.022 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 149 MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
....+..+.+...........+.+.++++++..+.+ ++.+...++..++.++.+++.||.+||+.+..+.++++++.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 333434444444344455556777788999999999 8999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhCCC---------------------C------------C--CCc--c-hhHHHHHHHHHhhccccccccccc
Q 043907 229 IGSIMAAQLGDH---------------------G------------G--CSE--G-YAYLILVLVCLCSSGYCYSWGPLA 270 (330)
Q Consensus 229 ~~~~~~~~~~~~---------------------~------------~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 270 (330)
+++......... . . ..+ . .....++..++.+.+.+ ...+..
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~ 193 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLG 193 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcC
Confidence 776532110000 0 0 000 1 12223344444444433 334566
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
..++.|.+|+++|+...|+.+....+|..+++.+.+.+.+.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999999888754
No 183
>PRK10133 L-fucose transporter; Provisional
Probab=99.19 E-value=6.1e-10 Score=94.03 Aligned_cols=145 Identities=13% Similarity=0.009 Sum_probs=106.6
Q ss_pred HHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907 153 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
+.++.............|.+.+++|.++.+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+.+...
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~ 111 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334446667778988889999999999 99999999999999999999999999999999999998888765322
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
. ..++.+.......+.+.+.+.... ....++.|..|+++|....++.+....+|..+++.+.+.+.
T Consensus 112 ~----------~a~~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 112 A----------EIMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred H----------hcCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 013344445555555555554333 33445567777777777788999999999999998876544
No 184
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.18 E-value=1.1e-10 Score=82.49 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccc
Q 043907 189 VVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGP 268 (330)
Q Consensus 189 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (330)
+...++..++.++.+++.||+|||+.+..+.....++.+..... .+.+.......+.+.+.+. ..+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAF-ALV 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HHH
Confidence 34567888999999999999999999988877777776655442 2233333333444333332 234
Q ss_pred ccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 269 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
....+..|.+|+++|++..++.+....++..+++.+.+.+.+..++ ..+++.+.+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 5556678999999999999999999999999999999999888775 556665554443
No 185
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.18 E-value=2.2e-10 Score=97.67 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=97.3
Q ss_pred HHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 043907 166 GLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE 245 (330)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
..-++.+.++.|-++... ++.+...+...+..++.|+++|.+|||..++.+.++..++.++....
T Consensus 64 a~~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 344566777887765444 57778889999999999999999999999999999999998887754
Q ss_pred chhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHH
Q 043907 246 GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLV 324 (330)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 324 (330)
++....+....+.+.+. +........++|..|.|.|..+.++.....-.....++.+...+..+.+| |.|++.+.+.
T Consensus 129 ~~~~~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred CcHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 44444444555554443 33334455568999999998877766554434344555555554444445 4555554443
Q ss_pred HH
Q 043907 325 LI 326 (330)
Q Consensus 325 ~~ 326 (330)
.+
T Consensus 207 ~i 208 (599)
T PF06609_consen 207 GI 208 (599)
T ss_pred HH
Confidence 33
No 186
>PTZ00207 hypothetical protein; Provisional
Probab=99.18 E-value=1e-09 Score=94.17 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=100.2
Q ss_pred hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907 162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
.+.+..+.|.+.+++|++..+.+ ...... .......++.|++.||+|+|+++.++.+...++.+..++....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~-~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~------ 114 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLS-TITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE------ 114 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 45667788888889999998888 666553 3334566788999999999999999999999998887764200
Q ss_pred CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHH
Q 043907 242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFG 321 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (330)
. -..+.+...+...+.+.+.+.... .....+.+.+| ++||++.|+......+|+.+.+.+...+........+++.+
T Consensus 115 ~-i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 115 V-IEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred c-ccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0 012333333444444333322222 22334467887 68999999999999999987665555544321124444444
Q ss_pred HHHHH
Q 043907 322 GLVLI 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
++.++
T Consensus 192 vl~~v 196 (591)
T PTZ00207 192 SFALV 196 (591)
T ss_pred HHHHH
Confidence 44433
No 187
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.16 E-value=1.9e-09 Score=91.02 Aligned_cols=162 Identities=14% Similarity=-0.082 Sum_probs=95.2
Q ss_pred HHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907 154 PFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
..+....+......+.|.++++ .|+++.+.+ ...+...+...+++++.|+++||+|||+.+..+.....+........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 96 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTG-IIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445566777777755 899999999 99999999999999999999999999999877655544433222111
Q ss_pred HHHHhCCCCCCCcchhHHH-HHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 233 MAAQLGDHGGCSEGYAYLI-LVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
..... -....... .......+...... .+....+. |.. .+.++...|..+....++..++|.+.+.+.+.
T Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 167 (420)
T PRK09528 97 VFAPL------LQYNILLGAIVGGIYLGFGFLAG-AGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI 167 (420)
T ss_pred HHHHH------HHHHHHHHHHHHHHHhhhhhccc-hhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence 00000 00001110 11111111111111 11111221 222 24567788888888999999999999988774
Q ss_pred ccchhHHHHHHHHH
Q 043907 312 FKAGIFFFFGGLVL 325 (330)
Q Consensus 312 ~g~~~~~~~~~~~~ 325 (330)
.....|++.+++++
T Consensus 168 ~~~~~f~~~~~~~~ 181 (420)
T PRK09528 168 NPQINFWLGSGSAL 181 (420)
T ss_pred CchHhHHHHHHHHH
Confidence 33456665554443
No 188
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.16 E-value=3e-09 Score=85.88 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=155.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHhhcccccccc-----------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF------NIY--MLIFGRLLLGVGIGFGNQ----------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~----------------- 56 (330)
+.+-++.||+|-|...+++....+++..+-..+. .++ ....+..+.+.+.-....
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~ 176 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI 176 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence 4567899999999999999999999999877662 233 555666666655544333
Q ss_pred -----------------------c-----cCccchHH--HHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHH
Q 043907 57 -----------------------I-----KGGWGWRI--SLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKML 105 (330)
Q Consensus 57 -----------------------~-----~~~~~wr~--~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~ 105 (330)
+ .+...|-. .|+.....+.+.+.+ .+..+|.|+.-....+ .
T Consensus 177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~------~-- 248 (480)
T KOG2563|consen 177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ------A-- 248 (480)
T ss_pred hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH------h--
Confidence 1 11234554 344333333332222 3334443321100000 0
Q ss_pred HHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhH
Q 043907 106 QRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLL 185 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 185 (330)
. +.+.+-..+.++.++++ .+......+......++...+.+...+...|++...++
T Consensus 249 ----------------~---~~~~~f~~si~~~~~n~----~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG- 304 (480)
T KOG2563|consen 249 ----------------A---LQDASFPKSIKSCFKNR----QFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG- 304 (480)
T ss_pred ----------------h---hhcCcHHHHHHHHHcCc----cHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccc-
Confidence 0 00111233445555442 33333333333334445555555544555677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcch-hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKV-LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY 264 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (330)
+......+.+++++.+.|.+.||.+.-+ ..+.......++...+.... . .....+..... +...+.+..
T Consensus 305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~--------~~~~~viv~~t-~~~~g~~~~ 374 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-L--------FLGDSVIVFTT-CGLLGFFGT 374 (480)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-c--------cCCceEehhhh-HHHHHHhhc
Confidence 8899999999999999999999987544 33333333333322222111 0 11222222222 222334455
Q ss_pred ccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 265 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 265 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+..|+..-+-.|..-|..-++..|+.+..+++.+.+-.+..+...+..+
T Consensus 375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred CCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 6667777776787655667889999999999999999999998887766
No 189
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.15 E-value=1.2e-09 Score=93.72 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=106.5
Q ss_pred HHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccchh-hhHhhHHHHHHHHH
Q 043907 155 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKVL-FLVGGMQMLVSQVI 228 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~ 228 (330)
.+.+...........|.++++.|.+..+.+ .. +..+... ++.++.++++||+ |||+. +..+.+...++...
T Consensus 21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig-~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~ 97 (491)
T PRK11010 21 GFASGLPLALTSGTLQAWMTVENIDLKTIG-FF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 334445556667778888988899888887 44 2233332 6889999999999 99886 55565556555555
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
+.+.. +..+.+.......+...+.+ ...+...++..|.+|+++|+++.++......++..+++.+...+
T Consensus 98 ~a~~~----------~~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l 166 (491)
T PRK11010 98 MGFLE----------PGTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWL 166 (491)
T ss_pred HHHcC----------CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54431 11233333333333333332 44445567778999999999999999999999999999999998
Q ss_pred Hh-hccc-hhHHHHHHHHHH
Q 043907 309 LC-HFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 309 ~~-~~g~-~~~~~~~~~~~~ 326 (330)
.+ ..|| ..|++.+++.++
T Consensus 167 ~~~~~GWr~~f~i~a~l~ll 186 (491)
T PRK11010 167 ADRYLGWQGMYWLMAALLIP 186 (491)
T ss_pred HhcccCHHHHHHHHHHHHHH
Confidence 88 4576 456665555443
No 190
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.14 E-value=6.5e-10 Score=91.64 Aligned_cols=134 Identities=19% Similarity=0.098 Sum_probs=99.1
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.......|.+.+++|++..+.+ +..+...++..++.++.|++.||+|||+.+..+.....++.+.. ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAG-LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA---------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh----------
Confidence 4455678889999999999999 99999999999999999999999999999988877666555443 21
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
++.+..+....+.+.+.+... +....++.|.+| ++|+++.++.+....++..+++.+.+.+.+..+
T Consensus 85 ---~~~~~l~~~~~~~g~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 85 ---PGTALLFAGTALIGVGIAIIN-VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHh-ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223333333333333333222 233345567776 579999999999999999999999888877654
No 191
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.13 E-value=1.1e-09 Score=93.47 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=116.9
Q ss_pred ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhh
Q 043907 140 QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGG 219 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 219 (330)
+++..+..+..-.+..+ +......-.+-+..+..-++...+ ++.....+..++.++++|.++||++||++++.+-
T Consensus 8 r~~~Fr~lw~a~~iS~l----G~~~~~va~~wlv~~lt~S~~~va-lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNL----GDWMQTVALAWLVTQLTGSPLMVA-LVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred cCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 34444444444444433 333333444444444455666666 7778888889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHH
Q 043907 220 MQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTF 299 (330)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~ 299 (330)
....+....+.+.... ...+.+..++..++.+.+. ....|...+++.|+.|+++...++++.+...++...
T Consensus 83 ~~~~~~~~~L~~l~~~--------~~~~~~~Ll~~~fl~g~~~-a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~ 153 (524)
T PF05977_consen 83 LLRALVALLLAVLAFF--------GLLSPWLLLILTFLLGIGS-AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI 153 (524)
T ss_pred HHHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence 8877666665554322 1233444444444444443 344566677789999999999999999999999999
Q ss_pred HHHHhhhhHHhhcc-chhHHHHHHH
Q 043907 300 LTAQTFLPMLCHFK-AGIFFFFGGL 323 (330)
Q Consensus 300 ~~~~~~~~~~~~~g-~~~~~~~~~~ 323 (330)
++|.+.|.++...| ...|.+-+..
T Consensus 154 iGPalgG~Lva~~G~~~~f~inals 178 (524)
T PF05977_consen 154 IGPALGGILVAFFGAAAAFLINALS 178 (524)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888 4566554443
No 192
>PRK09952 shikimate transporter; Provisional
Probab=99.13 E-value=1.8e-09 Score=91.51 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHH-Hhc--CCCCchhhHHHH-----HHHHHHHHHHHHHHHHHHHHhCcchhhhH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLF-RTL--KLGESTSLLLSA-----VVAGGMGTVLAIISMILADKFGRKVLFLV 217 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 217 (330)
+......+................|.+. +++ +.++.. + ... ....++..+++++.|+++||+|||+.+..
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-G-TLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-H-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 3444444455544444444555555444 333 455543 3 222 23456677888999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCCcchh------HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHH
Q 043907 218 GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYA------YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITV 291 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 291 (330)
+..+.+++.+..++. ++... ...+.+..+.+.+.+..+. ....++.|.+|+++|+...+..+
T Consensus 100 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~ 167 (438)
T PRK09952 100 TVWMMGIATALIGLL-----------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWG-GAALLAVESAPKNKKAFYSSGVQ 167 (438)
T ss_pred HHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHHHhhhcccHH-HHHHHHHHhCCCCCCcHHHHHHH
Confidence 999998888877764 11111 1233334444444443333 34567789999999999998888
Q ss_pred HHHHHHHHHHHHhhhhHHh--------hccch-hHHHHHHH
Q 043907 292 AVNFVFTFLTAQTFLPMLC--------HFKAG-IFFFFGGL 323 (330)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~--------~~g~~-~~~~~~~~ 323 (330)
....+|..+++.+...+.. .+||. .|++.+..
T Consensus 168 ~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~ 208 (438)
T PRK09952 168 VGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVL 208 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHH
Confidence 8888888777766655442 35664 55544433
No 193
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.12 E-value=2.3e-09 Score=86.95 Aligned_cols=287 Identities=13% Similarity=0.087 Sum_probs=167.9
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc--------------------------
Q 043907 3 IASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------- 56 (330)
Q Consensus 3 ~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------- 56 (330)
+...++|..|.|++++++.+...+...+..+.++...+-+..+..|++.+....
T Consensus 60 ~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l 139 (412)
T PF01770_consen 60 PVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATL 139 (412)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999988665
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc--chhHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS--DVKAELND 120 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 120 (330)
-.+..+++...++......+.++..+++|..++-..-+++ .++..+ .++.+.++ +.+++.++
T Consensus 140 ~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~-~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (412)
T PF01770_consen 140 VGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK-PPAEQD-ANESESDKMNESPESSSS 217 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc-Cccccc-cccccccccccccccccc
Confidence 1133456777777776666666777788887654332222 111000 00000000 00000000
Q ss_pred HHHhcccccc-CccchHHh---cccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc---CCCCchhhHHHHHHHHH
Q 043907 121 LIRASSTSKS-ITQPFKNI---IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL---KLGESTSLLLSAVVAGG 193 (330)
Q Consensus 121 ~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~ 193 (330)
..++.+..+. ....++.+ +++...++.++...+.+....+++....+|...+-++. +-...-.+ .+-....+
T Consensus 218 ~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG-~VeA~~tl 296 (412)
T PF01770_consen 218 TEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNG-AVEAASTL 296 (412)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccch-HHHHHHHH
Confidence 0000000000 01112222 22334556666777777777888888888888877766 22222334 66777777
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV 273 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
.+.++++..|++..++.+..-+.++......+.+++... ..++.|.......++...+..... +...-
T Consensus 297 lgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-----------~t~~Iwv~Y~~yIif~~~y~fliT-iA~~q 364 (412)
T PF01770_consen 297 LGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-----------FTGNIWVCYAGYIIFRSLYMFLIT-IASFQ 364 (412)
T ss_pred HHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 888888888888666655444443333322222222221 115566666666666666554433 33333
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
++.....+.-|..+|+......+...+...+
T Consensus 365 IA~~l~~e~yaLVFGiNtf~Al~LQtilT~i 395 (412)
T PF01770_consen 365 IAKNLSEERYALVFGINTFVALVLQTILTLI 395 (412)
T ss_pred HHHhccccceeeeeeeHHHHHHHHHHheEEE
Confidence 3455566777888888877766655554433
No 194
>TIGR00898 2A0119 cation transport protein.
Probab=99.12 E-value=3.7e-10 Score=97.69 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=96.3
Q ss_pred hHHHHHHhcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907 168 YSPVLFRTLKLG---ESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS 244 (330)
Q Consensus 168 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.|.+.++++++ +.+.+ +..+...++.+++.++.|+++||+|||+.+..+.++..++.+...+.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~-~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------ 177 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVD-LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------ 177 (505)
T ss_pred ccccEEEEecceechHHHHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence 445666778887 67777 88999999999999999999999999999999888888777766553
Q ss_pred cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
++.+...+...+.+.+.+ ...+....++.|.+|+++|+.+.++......+|..+++.+...+.
T Consensus 178 -~~~~~~~~~r~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred -ccHHHHHHHHHHHHhhcc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444433 334456677799999999999999988888788777777665543
No 195
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.11 E-value=1.5e-08 Score=81.54 Aligned_cols=164 Identities=10% Similarity=-0.029 Sum_probs=110.2
Q ss_pred cchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HhC
Q 043907 133 QPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD-KFG 210 (330)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g 210 (330)
..+++...++..++.+....+..+. +......+ |+=-+.+|++..+.. .++.....+.++|....+++.. |.+
T Consensus 199 ~a~~~~~~~~~a~~f~~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~ 273 (403)
T PF03209_consen 199 EAWRQVWASPQARRFFVFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLG 273 (403)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4455666666666665555444432 22222222 222256799999988 8899999999999999998766 577
Q ss_pred cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHH
Q 043907 211 RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT 290 (330)
Q Consensus 211 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 290 (330)
+++....+.....++...+.... ...+.+.......+++.+.+.........+ -+..+++..|+.+|..
T Consensus 274 ~~~~a~~G~~~~~~~f~lii~a~----------~~~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~W 342 (403)
T PF03209_consen 274 KKRTAALGCLLGALAFALIILAG----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAW 342 (403)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH----------hcccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHH
Confidence 77777777777777766655543 123455555555555555544333333333 4888888899999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhhc
Q 043907 291 VAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
...+.+...++..+.+.+.|..
T Consensus 343 GaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887753
No 196
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.10 E-value=2e-09 Score=102.07 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
+..+...+...+.+++.|+++||+|||+++........+.......... ..+.+..+++.++.+.+.+ .
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~~a-~ 124 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIHSA-L 124 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHH-h
Confidence 6677788889999999999999999999764322222111111111110 0334444444444444433 4
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHH
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (330)
..|....++.|.+|+++|++++|+.++...++..++|.+.+.+.+..+|..++
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~ 177 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV 177 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 45666778899999999999999999999999999999999999988865443
No 197
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.3e-10 Score=91.87 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=112.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907 176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV 255 (330)
Q Consensus 176 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
.+-...+.+ +++....+.+++.+++.|.+.||+|+|..++.|..++..+.+++++. .+.+..+++-
T Consensus 101 ~~~e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR 166 (464)
T KOG3764|consen 101 LDRENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVAR 166 (464)
T ss_pred ccccccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHH
Confidence 344556777 89999999999999999999999999999999999999999999885 3344445555
Q ss_pred HHhhcccccccccccccccccccchhh-hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHhh
Q 043907 256 CLCSSGYCYSWGPLAWLVPSEIFPLEI-RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMT 328 (330)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 328 (330)
.+-+.+.+... ....+++++.+|++. |++++|+.-....+|-.++|+++|.++|..| ...|.+.++++++-.
T Consensus 167 ~LQgvgsA~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~ 240 (464)
T KOG3764|consen 167 SLQGVGSAFAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG 240 (464)
T ss_pred HHhhhhHHHHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence 55555544333 345567789998765 7999999999999999999999999999999 688999988887643
No 198
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.10 E-value=9.7e-10 Score=90.65 Aligned_cols=136 Identities=17% Similarity=0.092 Sum_probs=92.4
Q ss_pred hHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccchhh-hHhhHHHHHHHHHHHHHHHHHh
Q 043907 164 IVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKVLF-LVGGMQMLVSQVIIGSIMAAQL 237 (330)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
......|.+.++.|++.++.+ ..... .+...+ .++.|+++||+ |||+.+ +.+....++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 445567888899999999888 65444 444444 89999999998 888874 455555555544444321
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+....+.......... .......+....++.|.+|+|+|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 ------~~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred ------cchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1122222222222222 22223344556677899999999999999999999999999999998888777
No 199
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.7e-09 Score=90.69 Aligned_cols=141 Identities=21% Similarity=0.112 Sum_probs=115.6
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHH
Q 043907 175 TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL 254 (330)
Q Consensus 175 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
++++++++.+ ++.+....+.+++.+..+++.||+|-|+++..+.++.++..++..+... ...+..+++
T Consensus 67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence 3567788888 8999999999999999999999999999999999999999988888742 223344555
Q ss_pred HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh-ccc-hhHHHHHHHHHHhh
Q 043907 255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH-FKA-GIFFFFGGLVLIMT 328 (330)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~ 328 (330)
-.+.+.+.+..+. ....+.++-.|+++|++..++.....++|..+.-++.|.+.+. .|| ..|++++++.++..
T Consensus 135 R~lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~ 209 (466)
T KOG2532|consen 135 RFLQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF 209 (466)
T ss_pred HHHhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 5555555555554 4456668999999999999999999999999999999999998 786 78888888776643
No 200
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.04 E-value=4.4e-09 Score=83.10 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=49.1
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
++.|.++||+|||+..+..+++.+++++.. ..+++..++++|++.|++......
T Consensus 87 ~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 87 TFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999754 568999999999999999998877
No 201
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.03 E-value=9.8e-09 Score=85.83 Aligned_cols=152 Identities=8% Similarity=-0.031 Sum_probs=89.6
Q ss_pred HhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhCcchhhh-HhhHHHHHHHHHHHHHHH
Q 043907 158 QVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGG-MGTVLAIISMILADKFGRKVLFL-VGGMQMLVSQVIIGSIMA 234 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~ 234 (330)
...+........|.+. +++|.++.+.+ ...+...+ ....+.+..++ .||+|||+.++ .+.....+......+.
T Consensus 27 ~~~~~~~~~p~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 102 (393)
T PRK15011 27 TGIAGALQTPTLSIFLTDEVHARPAMVG-FFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN-- 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh--
Confidence 3344455556666655 67899999888 66555444 44555555555 99999998754 4444434444433332
Q ss_pred HHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhh--hhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 235 AQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIR--SAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
++.+.......... +......|....+..|..+++.| +...++.+....++..++|.+.+.+.++.
T Consensus 103 -----------~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~ 170 (393)
T PRK15011 103 -----------RNYFVLLFVGVFLS-SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF 170 (393)
T ss_pred -----------hHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 22222222222222 22223444555555565555444 23346777888899999999999999988
Q ss_pred cc-hhHHHHHHHHH
Q 043907 313 KA-GIFFFFGGLVL 325 (330)
Q Consensus 313 g~-~~~~~~~~~~~ 325 (330)
|| ..|++.+..++
T Consensus 171 gw~~~f~~~~~~~~ 184 (393)
T PRK15011 171 SFTVMYLSAAVAFI 184 (393)
T ss_pred ChHHHHHHHHHHHH
Confidence 86 45555555443
No 202
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.03 E-value=1.4e-08 Score=84.56 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=101.5
Q ss_pred HHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH-HHHHHHHH
Q 043907 153 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML-VSQVIIGS 231 (330)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~ 231 (330)
+.++....+......+.|.+.++.|.+..+.+ ...+...+...++.++.+.++||+||+........... +..+.+..
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig-~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIG-LLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA 89 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556677788899999999999999 88899999999999999999999998654322221111 11111111
Q ss_pred HHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 232 IMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
. .++.+...+...+...+.+. ..|....+..| ++++|++..|.......+|..++|.+.+.+.++
T Consensus 90 ~------------~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~ 154 (382)
T TIGR00902 90 G------------AHNAWLLFIAIGLFALFFSA-GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM 154 (382)
T ss_pred h------------hhhHHHHHHHHHHHHHHHcc-chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13334343443334434333 33454555433 357789999999999999999999999999999
Q ss_pred ccc-hhHHHHH
Q 043907 312 FKA-GIFFFFG 321 (330)
Q Consensus 312 ~g~-~~~~~~~ 321 (330)
.|| ..|.+.+
T Consensus 155 ~g~~~~f~~~~ 165 (382)
T TIGR00902 155 FDEQNILAILT 165 (382)
T ss_pred cChhHHHHHHH
Confidence 886 4444443
No 203
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.03 E-value=7.5e-09 Score=86.66 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 150 AILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
.+....+....+......+.|.+++ +.|.++.+.+ ...+...+...++.++.|+++||+|||+.+..+.....+....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 84 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTG-IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP 84 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3433444444555666667777764 5799999999 9999999999999999999999999999988776655544333
Q ss_pred HHHHHHHHhCCCCCCCcchhH-HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 229 IGSIMAAQLGDHGGCSEGYAY-LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
+....... ....... .........+.+.+.. .+....+..|.. +.++...|.......+|..++|.+.+.
T Consensus 85 ~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~ 155 (396)
T TIGR00882 85 FFIYVFGP------LLQSNILVGAIVGGLYLGFVFSAG-AGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGI 155 (396)
T ss_pred HHHHHhhh------HHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhh
Confidence 22111000 0000111 1111122222222222 222233333322 234556677788888999999999887
Q ss_pred HHhhccc-hhHHHHHHHHHH
Q 043907 308 MLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 308 ~~~~~g~-~~~~~~~~~~~~ 326 (330)
+.+. ++ ..|++.+.+.++
T Consensus 156 l~~~-~~~~~f~~~~~~~~~ 174 (396)
T TIGR00882 156 LFSI-DPQIVFWLGSGFALI 174 (396)
T ss_pred hhcc-CchHHHHHHHHHHHH
Confidence 7654 53 556555544443
No 204
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.01 E-value=6e-09 Score=99.12 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=92.3
Q ss_pred HHHHHhcCCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch
Q 043907 170 PVLFRTLKLGEST--SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY 247 (330)
Q Consensus 170 ~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+...++.+... .+ +..+...+...+++++.|+++||+|||++++.+..+..+..+...+.... .+
T Consensus 34 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----------~~ 102 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTA-IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----------GW 102 (1146)
T ss_pred HHHHHHcCcccHHHHHH-HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----------cc
Confidence 3344444544333 34 66778888899999999999999999999988876665555444333211 23
Q ss_pred hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
.+..++..++.+.+.+ ...+....++.|.+|+++|++++|+......++..+++.+.+.+.+.
T Consensus 103 ~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444433 33445567779999999999999999999999999999999998876
No 205
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.99 E-value=7.6e-09 Score=85.66 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=47.2
Q ss_pred Ccchhhhhhhhch-hHHHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHhhcccccccc
Q 043907 1 SLIASSVTRAIGR-KVSILIGGVAFLADSAYG-GSA---F-NIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~g~~~~ 56 (330)
+++.|....|.|. |+.++.+.++..+++++. ++. + ..+.++++|++.|+|.|....
T Consensus 88 ~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~ 149 (488)
T KOG2325|consen 88 SLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV 149 (488)
T ss_pred chhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH
Confidence 4678888899887 889999999999999988 332 3 568999999999999988766
No 206
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.96 E-value=2e-08 Score=84.51 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=95.5
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhhHh-hHHHHHHHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD----KFGRKVLFLVG-GMQMLVSQVIIGSIMA 234 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~~~~ 234 (330)
.++.....+.+.++++.|.+....+ .......+..++..++.|+++| |+|||+.++.+ .....++...+.....
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 3455666777778899999998888 8889999999999999999999 59999998875 4444444444443211
Q ss_pred HH--hCCCCCCCcchh---HHHHHHHHHhhcccccccccccccccccccchhhh--hhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 235 AQ--LGDHGGCSEGYA---YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIR--SAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 235 ~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
.. ..+..+ ..... +.......+.....+....|. .++++|..|+++| +.+.++.+....+|+.+++.+.+.
T Consensus 97 ~~~~~~~~~~-~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 97 IGHLFGDNLD-KKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred hhhhcccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 00111 222223333333434333444 5677999998865 578898888899999999888876
Q ss_pred H
Q 043907 308 M 308 (330)
Q Consensus 308 ~ 308 (330)
.
T Consensus 175 ~ 175 (477)
T TIGR01301 175 S 175 (477)
T ss_pred H
Confidence 4
No 207
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.96 E-value=2.6e-08 Score=83.02 Aligned_cols=147 Identities=9% Similarity=-0.042 Sum_probs=96.5
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhH-HHHHHHHHHHHHHHHHhC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGM-QMLVSQVIIGSIMAAQLG 238 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (330)
.+......++|.+.++.|.+..+.+ ...+...+...++.++.|++.||+|||+...-... ...+....+..
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG-~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------- 89 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIG-LLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF------- 89 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHH-HHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-------
Confidence 4456667788889999999999999 99999999999999999999999999532211111 11111111111
Q ss_pred CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhH
Q 043907 239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIF 317 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 317 (330)
..++.+...+...+.+.+.+. ..|....+..+ . .++|+++.+.....+.++..++|.+.+.+.++.|| ..|
T Consensus 90 -----~~~~~~~l~i~~~l~g~~~~~-~~~~~~a~~~~-~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f 161 (382)
T PRK11128 90 -----GAHSFWLLFVAIGLFNLFFSP-LVPLTDALANT-W-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAIL 161 (382)
T ss_pred -----hcccHHHHHHHHHHHHHHHcc-cccHHHHHHHH-H-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 113344444433333333332 33344445434 3 45688899999999999999999999999999886 445
Q ss_pred HHHHH
Q 043907 318 FFFGG 322 (330)
Q Consensus 318 ~~~~~ 322 (330)
++.++
T Consensus 162 ~~~~~ 166 (382)
T PRK11128 162 WILTA 166 (382)
T ss_pred HHHHH
Confidence 54443
No 208
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.95 E-value=6e-09 Score=90.45 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=98.8
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHH
Q 043907 175 TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL 254 (330)
Q Consensus 175 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
....+..... ...++..++.++|.++.|.++||+|||++++.+..+..++.+..++. ++.+...++
T Consensus 112 ~~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~ 177 (521)
T KOG0255|consen 112 LVCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIF 177 (521)
T ss_pred eeeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHH
Confidence 3445555566 78889999999999999999999999999999999999998777764 555555666
Q ss_pred HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
-++.+.+.+ +.......+..|..++++|+.+..+ ....+.++..++...+++...+.
T Consensus 178 Rfl~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr 234 (521)
T KOG0255|consen 178 RFLSGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWR 234 (521)
T ss_pred HHHHHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence 665555544 4444667777899999999999999 88888999999999999888443
No 209
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.92 E-value=2.9e-08 Score=85.85 Aligned_cols=116 Identities=22% Similarity=0.098 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccc
Q 043907 184 LLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYC 263 (330)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (330)
+ ++.+...++..+++++.|+++|++|||+.++.+.+...++.++.... .+.....+.-.+.+.+.+
T Consensus 92 s-~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 92 G-LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVG 157 (513)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchh
Confidence 5 88899999999999999999999999999999999999999998876 455666666667666665
Q ss_pred cccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc--cch
Q 043907 264 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF--KAG 315 (330)
Q Consensus 264 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~ 315 (330)
.... +...+.+|+.|++.||...+..+....+|..++ ++.+...++. +|.
T Consensus 158 ~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr 209 (513)
T KOG0254|consen 158 GASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWR 209 (513)
T ss_pred hhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHH
Confidence 4443 556788999999999999999888887666555 6666665543 454
No 210
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.5e-08 Score=86.22 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907 145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 224 (330)
|....+.++...........+..+.+.+.++++.+..+.. ++.++......+..++.+.+.||+|.|.+.+.|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~-~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIA-WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHH-HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 3333444444443333344455566777888888888888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
+.+...+.. +.....+..-.+.+.+.++.+.|..... . .+.++.|+.++|+......+|.++.|.+
T Consensus 124 g~~lssF~~------------~i~~l~lt~gvi~G~G~~~~~~paiviv-~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 124 GLLLSSFAT------------SLWQLYLTFGVIGGLGLGLIYLPAVVIL-G-TYFEKKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred HHHHHHHHh------------hHHHHHHHHHHHhhccchhhhcchhhhh-h-hHhHHHHHHHHhhhhccCCcceeeHHHH
Confidence 998888762 3334444555566667777766654333 4 4555789999999999999999999999
Q ss_pred hhhHHhhccc-hhHHHHHHHHHH
Q 043907 305 FLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 305 ~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
...+.+..|| +.+++++.+.+-
T Consensus 190 ~~~l~~~~G~r~~~l~~~~~~l~ 212 (509)
T KOG2504|consen 190 LKYLLSKYGWRGALLIFGGISLN 212 (509)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999995 677777666543
No 211
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.88 E-value=9.5e-09 Score=84.75 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=116.8
Q ss_pred hhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC
Q 043907 161 GINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
+.....+++--.+++.+-.+..-+ ......-.+.++.-++.+++.+|+|+-+++..+.....+=.+.+...
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------- 456 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------- 456 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------
Confidence 334455555555678777766666 77788888999999999999999999999988877777666665554
Q ss_pred CCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHH-HHHHHHHHHHhhhhHHhhcc-chhHH
Q 043907 241 GGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-NFVFTFLTAQTFLPMLCHFK-AGIFF 318 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~ 318 (330)
++.|..+..-.+-+...+..|..+ ..|++...|++.|.++.++.... ..+|-.+++.++|.+.+.++ ..+|.
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 667777777777777777777744 56768999999999999988755 45666788999999988888 56777
Q ss_pred HHHHHHHHhh
Q 043907 319 FFGGLVLIMT 328 (330)
Q Consensus 319 ~~~~~~~~~~ 328 (330)
++++.|++..
T Consensus 531 ~~giAcl~~l 540 (618)
T KOG3762|consen 531 IFGIACLVTL 540 (618)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 212
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.87 E-value=3.4e-10 Score=96.89 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHhC--cchhh
Q 043907 140 QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSA-VVAGGMGTVLAIISMILADKFG--RKVLF 215 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~~~ 215 (330)
++-.+++.++...+...........+.++.|.++| +++.++.++. .+. .....+..+|.+++|.+.+|++ .|...
T Consensus 299 ~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~-~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~ 377 (539)
T PF03137_consen 299 KRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQAS-LLTGIVSIPGAALGILLGGYIVKKFKLSARGAA 377 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHhhhhcchhheehheEEEEEEEecCcHHHHH
Confidence 35566678888888887777778888899999996 5888888887 444 4444577788999999999974 44444
Q ss_pred hHhhHHHHHHHHHHHHHHHH------------Hh------CC--------------------CCCCCc---chhHHHHHH
Q 043907 216 LVGGMQMLVSQVIIGSIMAA------------QL------GD--------------------HGGCSE---GYAYLILVL 254 (330)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~------------~~------~~--------------------~~~~~~---~~~~~~~~~ 254 (330)
....+...+..+.....+.. .+ .. .+..+. ......++.
T Consensus 378 ~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~ 457 (539)
T PF03137_consen 378 KFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLIL 457 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHH
Confidence 44444443333331111100 00 00 000011 112223333
Q ss_pred HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHH-HHHHHHhhhhHHhhc
Q 043907 255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVF-TFLTAQTFLPMLCHF 312 (330)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 312 (330)
.++.....+....|..... -..+|+++|+.+.|+.....++. ..-+|.++|.++|..
T Consensus 458 ~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 458 LFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 3333333344444443333 48899999999999988775554 467899999999875
No 213
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.85 E-value=4.3e-08 Score=80.63 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=103.5
Q ss_pred hhhHhHHHhHHHHH-Hhc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLF-RTL----KLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIM 233 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~ 233 (330)
.++|.+...+..|+ .+. |++++++. .....+....-+..+++|+++|| +|+|+.+..+.+++.++.++++..
T Consensus 35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~- 112 (498)
T COG3104 35 FSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS- 112 (498)
T ss_pred HhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc-
Confidence 34455544444444 334 48888888 66677777777888999999999 599999999999999999998763
Q ss_pred HHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 234 AAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
+........+.......+.+ ..-|....++.|.+|++ .|-.++++.++..++|+++.|.+.+++.++
T Consensus 113 ----------~~~~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~ 181 (498)
T COG3104 113 ----------SVSGPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN 181 (498)
T ss_pred ----------ccccccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh
Confidence 10122223333333334433 33455566778888743 377788889999999999999999999999
Q ss_pred ccch-hHHH
Q 043907 312 FKAG-IFFF 319 (330)
Q Consensus 312 ~g~~-~~~~ 319 (330)
.||. .|-.
T Consensus 182 ~g~~~gF~~ 190 (498)
T COG3104 182 YGWHVGFGL 190 (498)
T ss_pred hCHHHHHHH
Confidence 9954 4433
No 214
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.85 E-value=9.8e-08 Score=72.95 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=102.1
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
...+.+..|.|++-+++|++.++.. .+.+...++..+| ++.|.+.|++|++.++.++.....++...+......
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~---- 89 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG---- 89 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 4557888999999999999999999 8888888888764 888999999999999999999999998887665411
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccc-cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWG-PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
..+..+.|......++. +.+..+. ........+.+| ++||++.|+.-....+++.+...+...+.+..
T Consensus 90 --~i~~~~~~~~~~~~~l~--~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 90 --RIPSLPVWLMCLFLFLG--GNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred --ccCccchHHHHHHHHHH--cccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 11112233333333322 3332322 222222347888 57999999999999999999888877766553
No 215
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.82 E-value=1.1e-07 Score=79.64 Aligned_cols=108 Identities=20% Similarity=0.068 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch---hHHHHHHHHHhhcccccccccc
Q 043907 193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY---AYLILVLVCLCSSGYCYSWGPL 269 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 269 (330)
+...++.++.|+++||+|||+.+..+..+..++.+........ .... .........+.+.+.+.. .+.
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~r~l~G~~~~~~-~~~ 116 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY--------ATIGIWAPILLLLARLIQGFSLGGE-WGG 116 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCCh--------hhhHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 3445788999999999999999999988888887776653100 0000 012233333333333322 234
Q ss_pred cccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
...++.|.+|+++|++..++.+....+|..+++.+...+.
T Consensus 117 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 117 AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred cHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999888888888888766553
No 216
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.81 E-value=2e-08 Score=81.33 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=78.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH
Q 043907 178 LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL 257 (330)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (330)
+++...+ .+.....++.+.|+++.|++.||+|||+++...++++.++.++.+... ....+..........-..
T Consensus 81 ~ps~i~~-~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~------~~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLA-LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV------GTTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC------CCCCCcchhhHHHHHHHH
Confidence 4455555 788899999999999999999999999999999999998887555421 001111223333333444
Q ss_pred hhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHH
Q 043907 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTF 299 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~ 299 (330)
.+.+.+.-+ |+..+.++|....+.||+-.+...+.+..|..
T Consensus 154 LGiGIGGDY-PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 154 LGIGIGGDY-PLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhccccCCC-cchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 444444333 57778889999999999988776555444433
No 217
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.81 E-value=3e-07 Score=73.61 Aligned_cols=137 Identities=15% Similarity=0.048 Sum_probs=105.4
Q ss_pred hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907 162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
........|.+.+.++.+..+++ .+......+..++++..+++.+|+|+|+-++.+..++++++.++.-..
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-------- 99 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-------- 99 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence 34445567888888999999999 999999999999999999999999999999999999999998876432
Q ss_pred CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
........+...+....+.+. .......+++.+.|++....-+.+.+.++.+|+.++|.+.+.+..
T Consensus 100 --~~~~y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 --SSKSYGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred --hhhhHHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 112222233333333333321 223456677788888888888999999999999999999999887
No 218
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.79 E-value=2.1e-08 Score=70.63 Aligned_cols=85 Identities=31% Similarity=0.412 Sum_probs=68.7
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+
T Consensus 16 ~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141)
T TIGR00880 16 PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAG 95 (141)
T ss_pred hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHh
Confidence 5688999999999999999999999999888889999999999999998887655
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHHHHh-hcCC
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTIGAI-FLPE 86 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pe 86 (330)
+.+..+|++.+.+.+...++..+... ..||
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 96 IALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44556899988887766665554433 3444
No 219
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.7e-07 Score=81.33 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=62.3
Q ss_pred cccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHhC--cchh
Q 043907 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSA-VVAGGMGTVLAIISMILADKFG--RKVL 214 (330)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~~ 214 (330)
.++...+++++...+........+..+.+++|-|++ ++|.+...+. .+. .+..-+..+|.+++|++..|+. .|..
T Consensus 385 ~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An-~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~ 463 (735)
T KOG3626|consen 385 IKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLAN-ILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA 463 (735)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHH-HHhhhhhhhhhhhhhhccceeeeeecccHHHH
Confidence 345556688888888888888888999999999995 6899998888 444 5555566788899999999875 3444
Q ss_pred hhHhhHHHHHH
Q 043907 215 FLVGGMQMLVS 225 (330)
Q Consensus 215 ~~~~~~~~~~~ 225 (330)
..+.++...+.
T Consensus 464 a~~~~~~~~l~ 474 (735)
T KOG3626|consen 464 AKFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHHH
Confidence 44444333333
No 220
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.75 E-value=1.6e-07 Score=78.59 Aligned_cols=167 Identities=12% Similarity=0.021 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHH--HHHHHHHHHHHHHHHH-HHHHHhCcchhhhHhhHHH-HH
Q 043907 149 MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLS--AVVAGGMGTVLAIISM-ILADKFGRKVLFLVGGMQM-LV 224 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~-~~ 224 (330)
..+...++.+...+.....+.|.++++.|.+.++.+ .. .....+...+..++.. +..||+|||+..++...+. ..
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iG-l~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALA-FLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 334455566667777888899999999999999998 64 3455777777777774 4788899998875554332 21
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
....+.... ............... .........+....+..|..+++.++...+.......+|..+++..
T Consensus 83 ~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~ 152 (390)
T TIGR02718 83 CLASLALVG---------PDVAGAGWAVGLLAC-ASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG 152 (390)
T ss_pred HHHHHHcCC---------cchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 011111122222221 2122223333444455677777777777777777667888888888
Q ss_pred hhhHHhhccc-hhHHHHHHHHHH
Q 043907 305 FLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 305 ~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
.+.+.++.|| ..|++.+++.++
T Consensus 153 ~~~l~~~~gw~~~f~~~a~l~~~ 175 (390)
T TIGR02718 153 TLVLFGKFGQRPAFLLVACVPLA 175 (390)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Confidence 8888998886 466666655443
No 221
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.71 E-value=2e-07 Score=78.80 Aligned_cols=140 Identities=14% Similarity=0.004 Sum_probs=103.1
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHH
Q 043907 174 RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILV 253 (330)
Q Consensus 174 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
++.+...++.+ ...+++.++.+++.+.++.+.||++-.+.+....+..++..++-... ++.+..++
T Consensus 74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIA 139 (495)
T ss_pred cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHH
Confidence 45667777888 89999999999999999999999995555554444444333332222 45555666
Q ss_pred HHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh------hccc-hhHHHHHHHHHH
Q 043907 254 LVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC------HFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~-~~~~~~~~~~~~ 326 (330)
.-++.+..-+.++++. ..++...+.+++|++.+|+.+....+|+++++.+...+.+ ..|| +.|++-+++.++
T Consensus 140 lr~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 6666776666666654 5566899999999999999999999999999999888643 2345 677777777666
Q ss_pred hh
Q 043907 327 MT 328 (330)
Q Consensus 327 ~~ 328 (330)
..
T Consensus 219 ~g 220 (495)
T KOG2533|consen 219 LG 220 (495)
T ss_pred HH
Confidence 54
No 222
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.69 E-value=5.3e-07 Score=71.54 Aligned_cols=149 Identities=17% Similarity=0.094 Sum_probs=93.4
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.....|.-..++++|+++.+.. .+.........+...+.|.++||+|||+..+...++..++++.--
T Consensus 51 WLQGpY~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~------------ 117 (354)
T PF05631_consen 51 WLQGPYLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH------------ 117 (354)
T ss_pred HhhcchhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh------------
Confidence 4444555556678999999999 888888899999999999999999999998888888877775422
Q ss_pred CCcchhHHHHHHHHHhhcccccccccccccccccc----cchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc---c
Q 043907 243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI----FPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK---A 314 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g---~ 314 (330)
.++....++.-.+.+...+.-.+..-.-++.|. +|++..+...+... ..+.+.++....+...+.+..+ -
T Consensus 118 --~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v 195 (354)
T PF05631_consen 118 --SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV 195 (354)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence 144444555555555554444443322333454 45555555555444 2233444555555556666554 2
Q ss_pred hhHHHHHHHHHH
Q 043907 315 GIFFFFGGLVLI 326 (330)
Q Consensus 315 ~~~~~~~~~~~~ 326 (330)
.+|..-..+.++
T Consensus 196 aPF~~a~~~l~~ 207 (354)
T PF05631_consen 196 APFDAAIVLLAV 207 (354)
T ss_pred chHHHHHHHHHH
Confidence 455544444433
No 223
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.66 E-value=3.1e-07 Score=78.13 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred HhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchh-hhHhhHHHHHHHHHHHHHHHHH
Q 043907 163 NIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVL-FLVGGMQMLVSQVIIGSIMAAQ 236 (330)
Q Consensus 163 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
.....|.+.++ ++.|.++.+.+ ...+...+...+..++.|+++|| +||||. ++.+....+++.+.+....
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g-~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~--- 91 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVG-TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP--- 91 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC---
Confidence 34445555555 56899999999 99999999999999999999998 577554 5556666666555544320
Q ss_pred hCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
+ ...............+...+++....|. .++..|.. ++++|++..++.+....+++.+++.+.+.+..
T Consensus 92 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~ 161 (437)
T TIGR00792 92 ---D-FSATGKLVYAYITYILLGLFYSFVNIPY-WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS 161 (437)
T ss_pred ---C-CCcchHHHHHHHHHHHHHHHHHhhcccH-hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000112222333333333333322222 34456776 57889999999888888888877777666553
No 224
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.65 E-value=3.9e-07 Score=76.22 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
...+...+++++|+++.++++||+|||..+.++.++..++.+........ +.....+..-.+.+...+..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----------~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----------PSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhHHH
Confidence 45677889999999999999999999999998888888877777665421 34444555555555454444
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh-hhHH
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF-LPML 309 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~ 309 (330)
.. ....++.|..|++.||....+......+|..++..+. +.+.
T Consensus 134 ~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il 177 (485)
T KOG0569|consen 134 TG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL 177 (485)
T ss_pred HH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc
Confidence 44 3355778999999999999888888888888874444 4444
No 225
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.64 E-value=1.1e-05 Score=67.16 Aligned_cols=134 Identities=16% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 043907 166 GLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE 245 (330)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
...+..|.+..|+++...+ ..-....+.++.+.++..++.+|+|..+.-..+......+..+....... ..+ +.+.
T Consensus 278 ~~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~--~~~-~~~~ 353 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWA--PGS-PFSS 353 (432)
T ss_pred cHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhc--CCC-Cchh
Confidence 3445566666799999998 88899999999999999999999999888777766555444443332211 010 0011
Q ss_pred chhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 246 GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
.+....+.....-..|.- ++-.....++.|..|+++||+..|+-+..+++...+.-.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333321 2222334455899999999999999888888776654333
No 226
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.62 E-value=6.2e-07 Score=73.52 Aligned_cols=161 Identities=10% Similarity=-0.037 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH-
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV- 224 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~- 224 (330)
.++......+..+........+.|.++++ .|++.++.+ .+.+...+..++.+++.|.++||+|.||-++.......+
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG-~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIG-IIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHH-HHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence 33334444444445556666777888864 899999999 999999999999999999999999977765544333222
Q ss_pred -HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccc---ccccccccccchhhhhhhhhHHHHHHHHHHHH
Q 043907 225 -SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGP---LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFL 300 (330)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 300 (330)
+........+.. +.+.+.. ..+.+...+..+.+ +.-++ +|... +..+--.|=..+.+.+|.++
T Consensus 87 ~~pff~~v~~pll--------~~n~~lg---~iig~i~l~~~f~~~~~~~Ea~-~er~s-r~~~feYG~~R~wGSig~ai 153 (412)
T PF01306_consen 87 FGPFFIYVFGPLL--------QSNFWLG---AIIGGIYLGLVFNAGVPLSEAY-AERVS-RRNGFEYGRARMWGSIGFAI 153 (412)
T ss_dssp CHHHHHHTHHHHH--------HTT-HHH---HHHTTTTTTTTTTTHHHHHHHH-HHHHH-HHHSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHH---HHHHHHHHHHHHcccchHHHHH-HHHHH-HHhcCCcchHHHHhhHHHHH
Confidence 211111111000 0112211 11112222333332 32333 23333 33455667778889999999
Q ss_pred HHHhhhhHHhhccchhHHHHH
Q 043907 301 TAQTFLPMLCHFKAGIFFFFG 321 (330)
Q Consensus 301 ~~~~~~~~~~~~g~~~~~~~~ 321 (330)
++.+.|.+.+..+...+|+..
T Consensus 154 ~s~~~G~L~~i~p~~~fwi~s 174 (412)
T PF01306_consen 154 ASLLAGILFNINPNIIFWIAS 174 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhheeeeeCccHHHHHHH
Confidence 999999998866666666544
No 227
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.56 E-value=2e-06 Score=72.46 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=51.8
Q ss_pred hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhhHhhHHHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR-KVLFLVGGMQMLVSQVIIG 230 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~ 230 (330)
..+.....+++.++ ++.|++..+.+ +..+...++.++++++.|.++||+|| |+.+..+.....+......
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iG-l~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIG-WVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555 56899999999 99999999999999999999999965 6666666655555444443
No 228
>PRK09669 putative symporter YagG; Provisional
Probab=98.55 E-value=9.5e-07 Score=75.23 Aligned_cols=141 Identities=19% Similarity=0.137 Sum_probs=87.9
Q ss_pred hHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchh-hhHhhHHHHHHHHHHHHHHHH
Q 043907 162 INIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVL-FLVGGMQMLVSQVIIGSIMAA 235 (330)
Q Consensus 162 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~ 235 (330)
......|++.++ +..|++....+ .+.++.-+...+..++.|.++|| +|||+. ++.+.+..++...++...
T Consensus 25 ~~~~~~~l~~~~t~~~gls~~~~g-~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~--- 100 (444)
T PRK09669 25 WQTVMLFLAYFYTDVFGLSAAIMG-TMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT--- 100 (444)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC---
Confidence 344455666555 56899999999 99999999999999999999999 677555 445555555554433221
Q ss_pred HhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 236 QLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
++. + .........+...++..++.....|. .++.+|.. ++++|++..+.-.....+|+.+++.+..++...
T Consensus 101 --p~~-~-~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~ 172 (444)
T PRK09669 101 --PDF-G-ATGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI 172 (444)
T ss_pred --CCC-C-cchHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 01112233333333333443322232 35557776 567899888888888888888877766555443
No 229
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.46 E-value=1.3e-05 Score=65.49 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=41.4
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 4 ASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 4 ~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
+.+..+|..-+.=...+..++.++.++.++++|.+.-+++-.+.+++.|..+.
T Consensus 79 aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~ 131 (402)
T PF02487_consen 79 APFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEV 131 (402)
T ss_pred hHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHH
Confidence 44556666655556677778888999999999999888888888888887666
No 230
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.45 E-value=5.1e-06 Score=71.36 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=87.0
Q ss_pred hhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HhCcchh-hhHhhHHHHHHHHHHHHH
Q 043907 159 VTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILAD----KFGRKVL-FLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~-~~~~~~~~~~~~~~~~~~ 232 (330)
.........|++.+++ ..|+++...+ .+..+.-+...+..++.|.++| |+|||+. ++.+.+..+++..++...
T Consensus 19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg-~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~ 97 (473)
T PRK10429 19 DFAIGIVYMYLMYYYTDVVGLSVGLVG-TLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA 97 (473)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC
Confidence 3444556667766664 4699999999 8889999999999999999999 4588554 455555555554443211
Q ss_pred HHHHhCCCCCCCcc-hhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 233 MAAQLGDHGGCSEG-YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
. +.++. ......+...++..++.....|. .++..|+. ++++|.+..+.-.....+++.+.+.+...+.
T Consensus 98 ------p--~~~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~ 167 (473)
T PRK10429 98 ------H--LFEGTAQYVFVCVTYILWGMTYTIMDIPF-WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFV 167 (473)
T ss_pred ------C--CCCccHHHHHHHHHHHHHHHHHHHHcchH-HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111 12223333333334444333333 34557887 5889999888866667777666665554443
No 231
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.43 E-value=3e-06 Score=52.02 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=54.9
Q ss_pred HHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHH
Q 043907 157 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQ 221 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 221 (330)
..+.+......|.|.+.++.|+++.+.+ .+..+..+..+++.++.|.++||.++++........
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445566777889999999999999999 999999999999999999999999999887765443
No 232
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.41 E-value=4.3e-09 Score=89.80 Aligned_cols=114 Identities=21% Similarity=0.125 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccc
Q 043907 183 SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGY 262 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (330)
.. ...+...++..+|+++.|.++||+|||+.+..+..+..++.++..+.. ...+.+...+...+.+.+.
T Consensus 48 ~~-~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 48 SS-LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HH-HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc
Confidence 34 678888999999999999999999999999999999988888877641 0014444455545555554
Q ss_pred ccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 263 CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 263 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
+.. .+....++.|..|++.|+...++.+....+|..++..+...+
T Consensus 117 g~~-~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 117 GGA-YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 433 345567889999999999999988887777766666555433
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.41 E-value=2.2e-07 Score=78.17 Aligned_cols=131 Identities=8% Similarity=0.025 Sum_probs=76.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH
Q 043907 178 LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL 257 (330)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (330)
+++...+ ....+..++.++|..+......+..-|+++....++..+..+.-.... ...+..-..++. +..+.-..+
T Consensus 252 fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~~~n~~~Gi~d~--~f~lgd~~l 327 (433)
T PF03092_consen 252 FSPSFYG-TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-TRWNLDLGIPDQ--WFALGDTIL 327 (433)
T ss_pred cCHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-EEEeeeeCcCCe--EEEEEhHHH
Confidence 6666666 556666777777777776666666667766655544443332211110 000000011122 111112222
Q ss_pred hhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
........+-|.. ...+|+.|+...|+.+++...+.+++..++..+...+.+..+
T Consensus 328 ~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 328 EEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2223333444443 344799999999999999999999999999999998887665
No 234
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=8.1e-05 Score=62.15 Aligned_cols=301 Identities=17% Similarity=0.134 Sum_probs=144.8
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc--------------ccCccchHHH
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ--------------IKGGWGWRIS 66 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~--------------~~~~~~wr~~ 66 (330)
+++.+.+.|+.|+|+.+.++......-.+..- -+|-+-++++-.+.|+|.+..+. ...+.+-.|.
T Consensus 67 ~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wa 145 (461)
T KOG3098|consen 67 CLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWA 145 (461)
T ss_pred HHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHH
Confidence 35788999999999999999999988777654 46677888899999999998777 2222233443
Q ss_pred HHhhhH-HHHHHHHHHhhcCC---CchhhhccCCc---HHH--HH---HHHHHH---hccc----chhHHHHHHHHhccc
Q 043907 67 LAMAAA-PASILTIGAIFLPE---TPNSKIQRSDD---HQK--AQ---KMLQRI---RGIS----DVKAELNDLIRASST 127 (330)
Q Consensus 67 ~~~~~~-~~~~~~~~~~~~pe---sp~~~~~~~~~---~~~--a~---~~~~~~---~~~~----~~~~~~~~~~~~~~~ 127 (330)
+.-... .+.+.+......-+ .+.....+.-. ..+ -. ...... ...+ +.+....+.+..
T Consensus 146 i~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~--- 222 (461)
T KOG3098|consen 146 IGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSSS--- 222 (461)
T ss_pred HHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhhc---
Confidence 333222 22122222222211 11100000000 000 00 000000 0000 000000000000
Q ss_pred cccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH--H-hcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043907 128 SKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF--R-TLKLGESTSLLLSAVVAGGMGTVLAIISMI 204 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (330)
+......++..++....++.+. ....++.............|.-. . ..+.+............++++.++....+.
T Consensus 223 ~~~~~~~l~~~~~l~~~~~ml~-L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~ 301 (461)
T KOG3098|consen 223 ETSFSELLKLTFKLLKTPKMLL-LFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSI 301 (461)
T ss_pred cccHHHHHHHHHHHhcCHhHHH-HHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHH
Confidence 0111122233332222223322 22222222122222222223222 1 233333333324566677888888888888
Q ss_pred HHHH---hCcchhhhHhhHHHHHHHHHHHHHHHHHhC----CCCC-CCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907 205 LADK---FGRKVLFLVGGMQMLVSQVIIGSIMAAQLG----DHGG-CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE 276 (330)
Q Consensus 205 l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 276 (330)
+.+| +||++.+..+..+..+..++.......+.+ ++.+ .-.+......++..+.+.+-. .+....+.++.+
T Consensus 302 l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~ 380 (461)
T KOG3098|consen 302 LSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIAL 380 (461)
T ss_pred HhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHH
Confidence 8766 578888888777777666665544322211 0000 011123344444444444433 334455566677
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907 277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (330)
.+ ++.|.++.++.-.-..+.+.++-+..+..
T Consensus 381 ~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 381 LY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred Hh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 77 46788888888777777776665555543
No 235
>PRK11462 putative transporter; Provisional
Probab=98.39 E-value=8.3e-06 Score=69.65 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=91.9
Q ss_pred hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchhhh-HhhHHHHHHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVLFL-VGGMQMLVSQVIIGSIM 233 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~~~ 233 (330)
........|+..++ +..|+++...+ .+..+.-+...+.-++.|.++|| +|||+..+ .+.+.++++..++...
T Consensus 23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~- 100 (460)
T PRK11462 23 IIFDNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST- 100 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC-
Confidence 33445556666665 55799999999 88999999999999999999997 57766554 4556666554443321
Q ss_pred HHHhCCCCCCCcch-hHHHHHHHHHhhcccccccccccccccccccc-hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 234 AAQLGDHGGCSEGY-AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
. +.++.. ..+..+...++..++.....|. .++.+|+.+ +++|++..+.-.....+|..+++.+..++.+.
T Consensus 101 -----p--~~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 101 -----P--DLSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred -----C--CCCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111 2233333334444444333333 345567765 78999999999888888888887776665554
Q ss_pred c
Q 043907 312 F 312 (330)
Q Consensus 312 ~ 312 (330)
.
T Consensus 173 ~ 173 (460)
T PRK11462 173 I 173 (460)
T ss_pred h
Confidence 4
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.36 E-value=2e-05 Score=62.60 Aligned_cols=151 Identities=19% Similarity=0.086 Sum_probs=111.7
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
.........++.+-++.|.+...++ ...++..++..+.+++..++.+|+|.++.+..+.++..++..+=..
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~aG-lLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~-------- 96 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSVAG-LLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL-------- 96 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--------
Confidence 3445566677788889999999999 9999999999999999999999999999998888777776654221
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhH
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIF 317 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~ 317 (330)
......+....+.+.+.+.+.. +....+-|.+|+ +-+..+|++.+...+++++++.+..++.++.+ | ...
T Consensus 97 ------~~~~~L~~gt~l~G~gIav~nV-LLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 97 ------GGLPLLFLGTLLAGAGIAVINV-LLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred ------ccHHHHHHHHHHHHhhHHHHHH-hhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 2233344444444445444433 334455788885 57889999999999999999999999988884 5 455
Q ss_pred HHHHHHHHHh
Q 043907 318 FFFGGLVLIM 327 (330)
Q Consensus 318 ~~~~~~~~~~ 327 (330)
.+.+..++++
T Consensus 169 ~~WAl~allA 178 (395)
T COG2807 169 GFWALLALLA 178 (395)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 237
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.35 E-value=8.7e-06 Score=69.62 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC-----cchhhhHhh
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG-----RKVLFLVGG 219 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~ 219 (330)
..+..+....+.+... .......+.++ +++|.+..+.+ ...+...+...+-.+ .|.++||++ ||+.+..+.
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~-~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQ-RLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 3334444444555555 44444444455 56899999987 677777777777555 999999996 566666665
Q ss_pred HHHH-HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhh---hhHHHHHHH
Q 043907 220 MQML-VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAG---QSITVAVNF 295 (330)
Q Consensus 220 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~---~g~~~~~~~ 295 (330)
++.. +....+.. +++..........+...+ ........-.+..|..+ +.++.. .+.......
T Consensus 103 ~l~~~~~~~~l~~------------~~~~~~~~~~~~~l~~~~-~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~ 168 (468)
T TIGR00788 103 LLGSAILYGLLPG------------KVSSAKVAAAFIFLAALA-KALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASA 168 (468)
T ss_pred HHHHHHHHHhccc------------ccchHHHHHHHHHHHHHH-HHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHH
Confidence 4442 22111111 112122222122222222 22333445566678888 544443 333334445
Q ss_pred HHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 296 VFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 296 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
+|..+++.+.+.+.+..+| ..|++.+++.++
T Consensus 169 ~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll 200 (468)
T TIGR00788 169 TGGLISSLLGGPLLDKTLTRILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 8999999999999988885 455555554443
No 238
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.33 E-value=2.5e-05 Score=65.87 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccc
Q 043907 191 AGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLA 270 (330)
Q Consensus 191 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (330)
.++..++.++..|.++||+|||..+........+......+. . ++..+ ..-..++++ ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~-~~~~~-~~~l~g~~~-~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------G-YWFFL-LLGLSGGFS-AIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------H-HHHhh-hcccccchh-hhhhhh
Confidence 367888999999999999999999988887777766665542 1 22222 222222333 223355
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 327 (330)
.++++|....+.|....|+.+.....+..++|.+.+.+.+..| ...+.+-++..++.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~ 191 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILS 191 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999887 45666655554443
No 239
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.30 E-value=1.2e-05 Score=63.96 Aligned_cols=141 Identities=18% Similarity=0.066 Sum_probs=95.9
Q ss_pred HHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907 165 VGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS 244 (330)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
.....|..-...|.+..+.. ++......+..+++...|...|++|||+..........+...+-+.
T Consensus 97 ~s~i~~~l~~~w~~s~~q~~-llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~------------- 162 (528)
T KOG0253|consen 97 LSLILPALDEVWGPSEGQAP-LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA------------- 162 (528)
T ss_pred HHHHHHHHHhhhchhhhhhh-HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC-------------
Confidence 33444555556677777777 8888889999999999999999999999888776666555444332
Q ss_pred cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHH
Q 043907 245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGG 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (330)
.++.....++-++.+.+.+. .|...++-.|..|..+|...+-+. ....+|......+.-.++.+.||..++....
T Consensus 163 spnf~~L~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~ 237 (528)
T KOG0253|consen 163 SPNFASLCVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS 237 (528)
T ss_pred CCCeehhhHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 13333344444444444443 444444447999999999877665 6666777777777767777888766555443
No 240
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.30 E-value=2.8e-06 Score=70.78 Aligned_cols=126 Identities=14% Similarity=0.073 Sum_probs=89.8
Q ss_pred HHHHh--cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch
Q 043907 171 VLFRT--LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR-KVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY 247 (330)
Q Consensus 171 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.|.++ .+-+.+..+ +......++.++.+++.|+...|.+. |+.++.+.+++.++.++.....+. ++..
T Consensus 59 pYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~ 129 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGV 129 (488)
T ss_pred hhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccch
Confidence 34444 566666777 88899999999999999999999886 777888999999998887444321 2235
Q ss_pred hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
.+.++.+-.+.+. +.+.....-.|+++....++|.++++.......++..+||.+...
T Consensus 130 ~y~mL~~R~l~Gv--g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 130 KYLMLVARILTGV--GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHcCc--CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 5555555555544 434445566788887777888888888777666666666666443
No 241
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.16 E-value=8.7e-06 Score=69.04 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=93.3
Q ss_pred hHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhh-HhhHHHHHHHHHHHHHHHHHh
Q 043907 164 IVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD----KFGRKVLFL-VGGMQMLVSQVIIGSIMAAQL 237 (330)
Q Consensus 164 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~ 237 (330)
....+.+.++ +..|+++...+ .+.....+...+..++.|.++| |+|||+..+ .+.+..+++..++......
T Consensus 19 ~~~~~~~~f~~~~~gl~~~~~g-~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~-- 95 (428)
T PF13347_consen 19 LLSSYLLYFYTDVLGLSPALAG-LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA-- 95 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc--
Confidence 3444544444 56799999888 8888889999999999999999 788877655 4556666655554432000
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc-hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+........+..+..+++..++.....|. .++.+|..+ +++|.+..+.-.....+|..+.+.+.+.+.+..+
T Consensus 96 ---~~~~~~~~~~~~~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g 168 (428)
T PF13347_consen 96 ---GLSFTAKLVWLFVFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG 168 (428)
T ss_pred ---hhhhhhHHHHHHHHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 00000112223444444455555444433 455689887 5789999999888888888877777777775554
No 242
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.15 E-value=0.00016 Score=51.20 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=91.4
Q ss_pred HhhhhHhHHHhHHHHHHhcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHH
Q 043907 158 QVTGINIVGLYSPVLFRTLK------LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGS 231 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 231 (330)
.+.++.........+.++.+ .++.... .-..+......+.+++.+.+.+++|.|+.++++.+...+-......
T Consensus 8 ~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~-~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~ 86 (156)
T PF05978_consen 8 LFTAFQTQSFIQESVIHSVHERNPSSISAGLGY-YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY 86 (156)
T ss_pred HHHHHhhhhHHHHHHHHHHhhcCcccccccccH-HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444443332 2333333 5667777788888899999999999999999888777654444322
Q ss_pred HHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 232 IMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
.+.+..+....+.+.+.+..|.+. -.++.+...++.|++-.++.-.....+.+++....-.+.
T Consensus 87 --------------~~~~~l~~~s~l~G~~~a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 87 --------------PNSYTLYPASALLGFGAALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred --------------hhHHHHHHHHHHHhhhhHHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777654 345578888899999999888888777777766654443
No 243
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.15 E-value=1.4e-05 Score=60.66 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=44.7
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
.+.|-++||-|||+.-+.-++-++++++. -.+|.|-.++++|.+-|+..+....
T Consensus 90 tivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 90 TIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred HHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHHHHHH
Confidence 35788999999999887777777766653 4679999999999999999988776
No 244
>PRK09848 glucuronide transporter; Provisional
Probab=98.07 E-value=0.00012 Score=62.59 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=46.4
Q ss_pred hhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----Ccchhh-hHhhHHHHHH
Q 043907 161 GINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF----GRKVLF-LVGGMQMLVS 225 (330)
Q Consensus 161 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~ 225 (330)
.......+.+.+++ ..|++..+.+ ....+..+...+..++.|+++||. |||+.. ..+.+...+.
T Consensus 23 ~~~~~~~~l~~y~~~~~gl~~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 23 AFAMGALFLLSYYTDVAGVGAAAAG-TMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 33444445555554 5699999999 999999999999999999999996 666654 4444444433
No 245
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.06 E-value=0.00011 Score=61.35 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=77.3
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR-KVLFLVGGMQMLVSQVIIGSIMAAQLG 238 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
........+.+.++++.|++..+.+ .+.+...+..++..++.|.++||.++ |+.+.+..++.++........
T Consensus 16 ~~~G~~~p~~~~~L~~~G~s~~qIG-~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~------ 88 (400)
T PF03825_consen 16 FAYGAFLPYLPLYLESRGFSGTQIG-ILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS------ 88 (400)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh------
Confidence 3445666788899999999999999 99999999999999999999999864 555555545444443333221
Q ss_pred CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
...+....+..++...+. ...|+..++..+... .++.-.|-....+.+|-.++...
T Consensus 89 -------~~f~~~~~~~~l~~~~~~-p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 89 -------SSFWWLFVIMLLFSFFFS-PTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred -------ccHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 223333333333333322 223343344333333 34455555555555555555443
No 246
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.98 E-value=4.2e-05 Score=60.33 Aligned_cols=277 Identities=11% Similarity=0.039 Sum_probs=148.1
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-----------------------------
Q 043907 6 SVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ----------------------------- 56 (330)
Q Consensus 6 ~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~----------------------------- 56 (330)
.+.|-.--|++++.-.+.......+.-+.++.+.+-+.-+..|...+....
T Consensus 64 lLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~ 143 (433)
T KOG3810|consen 64 LLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGK 143 (433)
T ss_pred HHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHh
Confidence 356777678877777666667777777777777777777777777665544
Q ss_pred ---------c--cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHHHhc
Q 043907 57 ---------I--KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRAS 125 (330)
Q Consensus 57 ---------~--~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 125 (330)
+ .+..+++..-.+......+.....+++|..+|-+..+.+ .++ ....+.+..+. ..+..+..+
T Consensus 144 ~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~-~~~--~~v~~~e~~~~-~~~~~~~l~-- 217 (433)
T KOG3810|consen 144 FVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL-EDK--ISVGDLEEMNP-QASYMSYLR-- 217 (433)
T ss_pred HHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc-ccc--ceeccchhcCc-cchhhHHHH--
Confidence 1 122344444445544444555666778877754443333 111 11111100000 000000000
Q ss_pred cccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcC-CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043907 126 STSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLK-LGESTSLLLSAVVAGGMGTVLAIISMI 204 (330)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (330)
.....+.+-++...+++.+....+.+....++++-..+|...+-++.. -+.+...+..-.+..+.+.++.+..|.
T Consensus 218 ----~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~ 293 (433)
T KOG3810|consen 218 ----GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGY 293 (433)
T ss_pred ----HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHh
Confidence 000111111223334455555666666677788888888776666543 222222224556667777888888888
Q ss_pred HHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhh
Q 043907 205 LADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRS 284 (330)
Q Consensus 205 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 284 (330)
+--++.|+.-++++.....-+..++... ..++.|.......++...+....... ..-+++....|.-|
T Consensus 294 l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya~yvlfr~~y~l~itiA-~~~iA~nL~~e~~g 361 (433)
T KOG3810|consen 294 LNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYAGYVLFRVIYQLTITIA-TFQIARNLSSELFG 361 (433)
T ss_pred eeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhhhHHHHHhhHhhhhhHH-HHHHHHhhhhhhhe
Confidence 8666666643333333222222222221 23556666666666666666554433 33335666778889
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 043907 285 AGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 285 ~~~g~~~~~~~~~~~~~~~~ 304 (330)
..+|+.....-+...+.+.+
T Consensus 362 LvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 362 LVFGINTFVALILQSILTLI 381 (433)
T ss_pred eeeehHHHHHHHHHHhheEE
Confidence 99998887766655554444
No 247
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.96 E-value=0.00013 Score=59.42 Aligned_cols=139 Identities=15% Similarity=0.083 Sum_probs=84.1
Q ss_pred HHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC-----cchhhhHhh-HHHHHHHHHHHHHHHHHhCC--CCCC
Q 043907 172 LFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG-----RKVLFLVGG-MQMLVSQVIIGSIMAAQLGD--HGGC 243 (330)
Q Consensus 172 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~ 243 (330)
+..+++.+....+ ......... .+.++..|+.+|+.+ ||..++... .....+..+....... ... .+..
T Consensus 6 MIvEL~vpA~lv~-~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~-l~~~~~~~~ 82 (403)
T PF03209_consen 6 MIVELGVPAWLVA-LLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLL-LAESGQQSS 82 (403)
T ss_pred HHHHhccHHHHHH-HHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHH-Hcccccccc
Confidence 3456677766666 444444444 356899999999998 887766544 4444444433333222 122 1111
Q ss_pred CcchhHHHHHHHHHhhcccccccc-cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 244 SEGYAYLILVLVCLCSSGYCYSWG-PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
.+...+.......+...+.+.... ....++.+|..|+++|+++.++...+.-+|-.++..+.+.+.+.+.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 122223223323322223332322 2234666899999999999999999998999999999999888765
No 248
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.93 E-value=0.00041 Score=61.49 Aligned_cols=133 Identities=16% Similarity=0.050 Sum_probs=87.6
Q ss_pred HHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHH
Q 043907 173 FRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLI 251 (330)
Q Consensus 173 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
.+..|+++..+. ..........-+...++|+++|+ +||++.+..+.++..++..++.+... ....+.......
T Consensus 15 ~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-----~~~~~~~~~~~~ 88 (654)
T TIGR00926 15 LNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-----PSSGHPLHDLLD 88 (654)
T ss_pred HHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-----cccccchHHHHH
Confidence 345788888777 66666677777888889999998 69999999988888888776665310 000001112223
Q ss_pred HHHHHHhhcccccccccccccccccccchh---hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 252 LVLVCLCSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
+..+.+...|.+ +.-|...+...|.++++ .|...+.+.++..++|+.+++.+.+.+.+..
T Consensus 89 l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 89 LLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333 23344455556777643 4777888999999999999999999887553
No 249
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0003 Score=58.89 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchh-hhHhhHHHHHH
Q 043907 152 LIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVL-FLVGGMQMLVS 225 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~ 225 (330)
...-+...........|+..++ +..|+++..++ .++.+.=+.-.+.-++.|.++|| +||++. ++.+.+..++.
T Consensus 18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG-~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~ 96 (467)
T COG2211 18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAG-TIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV 96 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHH-HHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence 3333333344456667777776 45799999999 88999999999999999999997 465555 44454555555
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
..++.... +...........+...++..++....-|- .++.+|+. .+++|.+..+.-.....+++.+...+
T Consensus 97 ~~l~F~~p-------~~~~~~k~~ya~vtY~l~~l~YT~vniPy-~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~ 168 (467)
T COG2211 97 AVLLFITP-------DFSMTGKLIYALVTYMLLGLGYTLVNIPY-GALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168 (467)
T ss_pred HHHHHcCC-------CcccCcchHHHHHHHHHHHHHHHheeCch-hhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443320 00011333444444455555665554444 24446665 46889999999999999999999888
Q ss_pred hhhHHhhcc
Q 043907 305 FLPMLCHFK 313 (330)
Q Consensus 305 ~~~~~~~~g 313 (330)
.+++....+
T Consensus 169 ~~plv~~~g 177 (467)
T COG2211 169 FPPLVKLFG 177 (467)
T ss_pred HHHHHHHhC
Confidence 888877654
No 250
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.74 E-value=0.00032 Score=57.66 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=83.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH--HHHHHHH
Q 043907 179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY--LILVLVC 256 (330)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 256 (330)
+.+... +.+.++.+..++..+.+.|+.||+|-|....++.....++..+=.... .+.-++..+ .......
T Consensus 77 s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss-------~p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 77 SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS-------LPFVPPLFRRPLTHTGQS 148 (480)
T ss_pred chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc-------CccccccchhhhhHHhHH
Confidence 555566 888899999999999999999999999999999998888876644331 000012222 2222222
Q ss_pred HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
+.......... ++.-...-.+|+++|+++..+..+.+.+|.+++..+-+.+..+.
T Consensus 149 iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 22211111111 22222234589999999999999999999999888887777654
No 251
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.64 E-value=0.0012 Score=56.46 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH-HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML-VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY 264 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (330)
+..++..+...+..++.|.++|+-++||.++....... ++...+.+. ++...+...+..++...+++.
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-----------~~~~~~~~~~l~iia~v~~~~ 142 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-----------SPGQWWLALVLFIIANVGYEA 142 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-----------CcchHHHHHHHHHHHHHHHHH
Confidence 55778888889999999999999988877666554444 344444443 223334444444444444443
Q ss_pred ccccccccccccccchhhh--------------------------hhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 265 SWGPLAWLVPSEIFPLEIR--------------------------SAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 265 ~~~~~~~~~~~e~~p~~~r--------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
+.. ...++..|+.+++.+ ++..+.....+++|+.+.-.+.-.+.
T Consensus 143 ~~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~ 212 (477)
T PF11700_consen 143 SNV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLV 212 (477)
T ss_pred HHH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 445677888887777 89999999999999888766654443
No 252
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.57 E-value=0.0011 Score=41.20 Aligned_cols=69 Identities=14% Similarity=-0.037 Sum_probs=60.8
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI 232 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 232 (330)
..+...+|.+.++.+++.++.+ ++.+...++.++|.+...++.++.++++.+..+.+...+....+++.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999 99999999999999999999999888888888888888888777765
No 253
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.52 E-value=0.02 Score=51.16 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=41.7
Q ss_pred cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHhhcccccccc
Q 043907 2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFN--------IYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~G~~~g~~~~ 56 (330)
+++|.++|+ +||++.+.++.++..++.++.+++.. ....+++-.+..+|.|+.-+
T Consensus 41 ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp 104 (654)
T TIGR00926 41 LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKP 104 (654)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcccccc
Confidence 467899996 79999999999999999888776421 23355666777788887666
No 254
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00076 Score=55.61 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchhhhHhhH
Q 043907 145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVLFLVGGM 220 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~ 220 (330)
++.+....+....+ .+...-..|.|.+.++.|.+....+ ..-....+.+++.+++.|..+|| +||||..+....
T Consensus 32 ~~li~v~~ia~Gvq-f~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQ-FGWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence 34444444444444 3345556788888999999998888 77777788899999999999997 688877665544
Q ss_pred -HHHHHHHHHHHHHHHHh--CCCCCCCc--chhHHHHHHHHHhhcccccccccccccccccccchhhhhh-hhhHHHHHH
Q 043907 221 -QMLVSQVIIGSIMAAQL--GDHGGCSE--GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSA-GQSITVAVN 294 (330)
Q Consensus 221 -~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~ 294 (330)
...++.++++....... .+++..+. ......++...+.-.......+|. -++..|+..++.+.+ +++......
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence 44455554444322211 12211111 112222223333333333333433 456678876666666 888887777
Q ss_pred HHHHHHHHHhhh
Q 043907 295 FVFTFLTAQTFL 306 (330)
Q Consensus 295 ~~~~~~~~~~~~ 306 (330)
.+|+.++=...+
T Consensus 189 avGnvLGY~~g~ 200 (498)
T KOG0637|consen 189 AVGNVLGYALGS 200 (498)
T ss_pred Hhcceeeeeccc
Confidence 777766654444
No 255
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.16 E-value=0.0023 Score=54.31 Aligned_cols=142 Identities=25% Similarity=0.283 Sum_probs=84.0
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907 170 PVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS 244 (330)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
|.+.+++|+++.+.. .......+.. ...++.|.++|-+ .||+.++++.++..++...+.... ..
T Consensus 14 ~~l~~~l~ls~~~~~-~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---------~~ 82 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQ-RLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---------AS 82 (433)
T ss_pred HHHHHHcCCCHHHHH-HHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---------cc
Confidence 445567899998877 5555544433 4568888999986 355556666666655555554431 00
Q ss_pred cchhHHHHHHHHHhhccccccccccccccccccc---chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHH
Q 043907 245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF---PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFF 320 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 320 (330)
..+......+..+...+.... ....-.++.|.. |.+ ||...+.......+|+.++..+.|.+.+..+ ...|.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 112222222222222222211 123334445654 444 8888888888999999999999999998877 3455554
Q ss_pred HHHH
Q 043907 321 GGLV 324 (330)
Q Consensus 321 ~~~~ 324 (330)
+.+.
T Consensus 161 ~~~~ 164 (433)
T PF03092_consen 161 AALP 164 (433)
T ss_pred HHHH
Confidence 4443
No 256
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.16 E-value=0.0085 Score=48.12 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=82.1
Q ss_pred hHHHhHHHHHHhcCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907 164 IVGLYSPVLFRTLKLGE--STSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG 241 (330)
Q Consensus 164 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
......+.+..+.+.+. .... .......+...++.++.|.+.||.|||+.+..+......+.+...+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC---------
Confidence 33445555555555554 2455 77788888888888999999999999977776665533333333322
Q ss_pred CCCcchhHHHHHHHHHhhcccccccccccccccccccch-hhhhhhhhHHHH-HHHHHHHHHHHhhhhHHhh
Q 043907 242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL-EIRSAGQSITVA-VNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 311 (330)
.....+.........+.+.+ ...+....+..|..|. +.|+...+.... ....+..+++.+.+.+.+.
T Consensus 90 --~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 --PNVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --ccchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222322222222222 3344556677888887 678888888777 4666777777666665554
No 257
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.12 E-value=0.021 Score=48.70 Aligned_cols=127 Identities=9% Similarity=-0.007 Sum_probs=79.4
Q ss_pred chhhHHHHHHHHHHHHHH-HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC----------CCcc---
Q 043907 181 STSLLLSAVVAGGMGTVL-AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG----------CSEG--- 246 (330)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--- 246 (330)
+... ++.+...+...+. .++.+++++|++|++++-...........++++........-++ .+.+
T Consensus 43 e~i~-fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 43 EIIP-FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 4444 5555555555555 78899999999999988877766666666665553211110000 0000
Q ss_pred -----hhHHHHHHHHHhhcccccc-cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 247 -----YAYLILVLVCLCSSGYCYS-WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 247 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
..|....... ..-.++.. .+-+.|.+++|.+++++-.+-.++....++++..+++.+...+.
T Consensus 122 ~i~~~~~W~~~~FYv-~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 122 FIAILRIWSFALFYV-MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111 11122222 22366788899999999999999999999999999999988876
No 258
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.012 Score=47.71 Aligned_cols=43 Identities=7% Similarity=-0.106 Sum_probs=36.2
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
.+..+++.++...||.+.+.|...++|+---..+...+.|...
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 4555788999999999999999999999888888888877654
No 259
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.98 E-value=0.0053 Score=47.38 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=45.6
Q ss_pred CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHhhcccccccc
Q 043907 1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA-------FNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
+++.|.+.|++|+|.++.+|.....+|......+ ++++.+.+..++.|.+.+....
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~t 115 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNT 115 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhh
Confidence 3578999999999999999999999998877654 4678888888888887665433
No 260
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.88 E-value=0.073 Score=45.24 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907 248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF 305 (330)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 305 (330)
.+..++...+++...+ -.......+..+..++++|..+-.+...+-.+|-.+|+.+.
T Consensus 372 d~~~~~~~~l~gltnG-y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 372 DAYFIILMLLFGFSNG-YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred cHHHHHHHHHHHHhhh-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433332 22234455667778888898888877777766666666553
No 261
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=96.58 E-value=0.11 Score=39.98 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=16.6
Q ss_pred cchHHHHHhhhHHHHHHHHHHhhc
Q 043907 61 WGWRISLAMAAAPASILTIGAIFL 84 (330)
Q Consensus 61 ~~wr~~~~~~~~~~~~~~~~~~~~ 84 (330)
.+||+.+.+.+++.++-++.+..+
T Consensus 38 ~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 38 NNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 359999988887776665554443
No 262
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.00046 Score=53.29 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=87.1
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHH
Q 043907 174 RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLIL 252 (330)
Q Consensus 174 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
.+.+.+..+.. ++.+....-+++.++++|++.|| +|-|...++-+....++.++++.-. -.+..|.+.
T Consensus 72 ~d~ni~~akft-LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg----------i~~aFw~M~ 140 (459)
T KOG4686|consen 72 LDSNIEYAKFT-LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG----------ISHAFWTML 140 (459)
T ss_pred cccccceeeee-eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch----------HHHHHHHHH
Confidence 44566666666 77888889999999999999998 4666554544444555555444321 114556666
Q ss_pred HHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 253 VLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
..-++++.+.. +.......+..-.+..++-+.++|+.....++|+.+--.+.+++++..+
T Consensus 141 ~GRF~FGIGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 141 AGRFLFGIGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhheeeccCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 66666655533 3333455666667788889999999999999999887777777777654
No 263
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.42 E-value=0.00085 Score=58.27 Aligned_cols=149 Identities=11% Similarity=-0.103 Sum_probs=1.0
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..........+.+-++++++..+.+ ++.+..-++.++..++..+..+|..|-+.+-.+.++++++.+++.+-.......
T Consensus 17 ~~~g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 17 MVSGYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 3333444455666688999999999 999999999999999999999997777788888888888888876543221100
Q ss_pred ----C-------------C----------------CCCcchhHHHHHHHHHhhccccccc---ccccccccccccchhhh
Q 043907 240 ----H-------------G----------------GCSEGYAYLILVLVCLCSSGYCYSW---GPLAWLVPSEIFPLEIR 283 (330)
Q Consensus 240 ----~-------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~p~~~r 283 (330)
. . ..+...........++.....+.+. .++..+|+-|..+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 0 0 0001111112222222222223333 34677898999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 284 SAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
+...|+......+|..+|=.+.+...
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp --------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHH
Confidence 99999999988888877766665544
No 264
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.089 Score=43.98 Aligned_cols=127 Identities=12% Similarity=0.107 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh-----CCCCCC---CcchhHHHHHHHHH
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL-----GDHGGC---SEGYAYLILVLVCL 257 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~ 257 (330)
+-..+..+...+.+....++.||+|-|+.+..+.....++..+.+.....+. ...+.. .....+......-.
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~ 415 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI 415 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence 4455666777788888889999999555555444433333333222211100 000000 01111111211122
Q ss_pred hhcccccccccccccccccccch--hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 258 CSSGYCYSWGPLAWLVPSEIFPL--EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
...-.....+ +++...++.... .-+|...|+.+....+.+.+.....|.+.+..|
T Consensus 416 ~g~~~a~t~~-~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 416 LGIPLAITFS-IPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred hCCccccccc-cccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 2212222222 233332211111 224666778888888888888888899888877
No 265
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.37 E-value=0.21 Score=41.73 Aligned_cols=149 Identities=9% Similarity=0.012 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHH-Hh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLF-RT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML 223 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 223 (330)
.....+...++.. +-....+...++ +. .|+++++..--+.-...=..+...++...+.|.++.|++++++.+...
T Consensus 6 ~~~llc~~gf~~~---frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 6 ITLLLCLFGFFKE---FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHh---cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3444444444433 344455555555 33 688877655233334444566677788899999999999999888777
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907 224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ 303 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 303 (330)
+...++.+. +....+-+.-+..+...+.-. ..+.++=...|+++--++.+......-.|.+++..
T Consensus 83 ~t~~lll~~-------------~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 83 ITWLLLLFG-------------TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHH-------------CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666554 444444444444444433221 22233335567788888888888888888888888
Q ss_pred hhhhHHhhc
Q 043907 304 TFLPMLCHF 312 (330)
Q Consensus 304 ~~~~~~~~~ 312 (330)
++..+....
T Consensus 148 lgQllvs~~ 156 (412)
T PF01770_consen 148 LGQLLVSFG 156 (412)
T ss_pred HHHHHHHhc
Confidence 877766543
No 266
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.25 E-value=0.0054 Score=51.94 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=54.9
Q ss_pred hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 228 (330)
.....+...++.+.+++|+++.+.+ .+...--+..+++.+++|.++||+.+|+.++++..+..+....
T Consensus 25 ~~~g~l~pll~vy~kQLGl~p~~~G-tl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 25 ARFGSLFPLLAVYFKQLGLNPAVVG-TLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred ecccccchHHHHHHHHcCCCHHHhh-hhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3345566778888999999999999 8888889999999999999999998888777766655544333
No 267
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.15 E-value=0.031 Score=46.16 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH-HHHHHHHHHHHHHhCCCCCCCc-chhHHHHHHHHHhhcccc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML-VSQVIIGSIMAAQLGDHGGCSE-GYAYLILVLVCLCSSGYC 263 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 263 (330)
...++..+...+-+++.|.++|+.|+||.......... ++.+.+.+. ++ .+.+....+..+...++.
T Consensus 62 y~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i-----------~~~s~~~~~l~~~il~~i~~~ 130 (438)
T COG2270 62 YASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI-----------PPGSYLLLLLLFLILASIGFE 130 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh-----------CCCchHHHHHHHHHHHHHhcc
Confidence 56677788888888999999999998876655444443 334444443 33 334444444444444444
Q ss_pred cccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 264 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 264 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
.... ...++..+..+++.-++..+.....+++++.+.-..
T Consensus 131 ~s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 131 FSNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred hhhe-ehhhHhhhhcCccccCcccccccccccccchHHHHH
Confidence 3322 334666788888777888887777777777664433
No 268
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=96.13 E-value=0.0011 Score=53.42 Aligned_cols=116 Identities=8% Similarity=-0.118 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907 187 SAVVAGGMGTVLAIISMILADKF-GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS 265 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (330)
....+.++-.+|+.+.++..-+. .+|.+. ...+.=.+..-++..+......+..+..-.+.+..++...+++...+ -
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence 46678889999998887642211 233333 22222222211222221100000000011233333333333333322 2
Q ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
.......+..+..++++|..+-.+....-.+|-.+|..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233555666788888888877777666665555555544
No 269
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.95 E-value=0.0089 Score=48.00 Aligned_cols=55 Identities=31% Similarity=0.375 Sum_probs=46.0
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhcccccccc
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFN--IYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~ 56 (330)
++.|.++||+|||+.+..+......+.+..++.++ .+.+.+.|+.+|++.+...+
T Consensus 57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHH
Confidence 47899999999998888888776666677777766 89999999999999986666
No 270
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.33 Score=41.29 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccc
Q 043907 183 SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGY 262 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (330)
+++....+......+.+++.+.+.|+++.|..+.++..........+.. .+.+.......+.+.+.
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------------~N~y~~yfssallG~Ga 116 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------------PNSYYLYFSSALLGFGA 116 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------------cchHHHHHHHHHhhhhH
Confidence 3435678888899999999999999999999999998888776666544 45667777778888887
Q ss_pred ccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 263 CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 263 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
+.-|..- -.+.+|..+++.+.+..++.-.....+-++|......
T Consensus 117 allw~Gq-G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 117 ALLWTGQ-GGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred Hheeccc-ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 7666543 4566899999999998888887777777766555433
No 271
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.74 E-value=1.1 Score=38.10 Aligned_cols=168 Identities=9% Similarity=-0.050 Sum_probs=84.3
Q ss_pred hhhhHhHHHhHHHHHHhcCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh
Q 043907 159 VTGINIVGLYSPVLFRTLKL-GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL 237 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
..+.-...+-.+.++.+..- +--... .....-.+..++..+..|...||..|.+....+.+..-++...-........
T Consensus 15 ~w~dR~w~Fa~~L~L~~i~p~sLl~~s-iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~ 93 (432)
T PF06963_consen 15 TWGDRMWEFAVPLFLISIFPGSLLPVS-IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLL 93 (432)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666655421 222233 4455566777888888999999999998876665543332222111111111
Q ss_pred CCCCCC--CcchhHHHHHHHHHhhccccccccc----cccccccccc--chhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 238 GDHGGC--SEGYAYLILVLVCLCSSGYCYSWGP----LAWLVPSEIF--PLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~--p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
...... +.......+......+......... +---.+..+. +++.....++...-.-.+...++|.+.|.+.
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~ 173 (432)
T PF06963_consen 94 SYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLM 173 (432)
T ss_pred hCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111110 0111222222222221111111110 1001111122 4556667777777777788999999999998
Q ss_pred hhcc-chhHHHHHHHHHHh
Q 043907 310 CHFK-AGIFFFFGGLVLIM 327 (330)
Q Consensus 310 ~~~g-~~~~~~~~~~~~~~ 327 (330)
+..+ .....+.++.+++.
T Consensus 174 t~~s~~~~~~~i~~~N~~S 192 (432)
T PF06963_consen 174 TFASPVIAAIFIAGWNLAS 192 (432)
T ss_pred hccCHHHHHHHHHHHHHHH
Confidence 8776 34445555555544
No 272
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=95.64 E-value=0.72 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
.++..+..+-+-.++.|+..|++.+.+.+++.+..
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fg 284 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFG 284 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHH
Confidence 34444444445577889999988887776665543
No 273
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.012 Score=45.31 Aligned_cols=63 Identities=24% Similarity=0.227 Sum_probs=43.4
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
+....|.-++++.+|+...+.+ .+........++...+.|-++||.|||+..+.-.+...+++
T Consensus 54 WLQgPYvYyLYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 54 WLQGPYVYYLYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred hhcCceeeeeehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 3333444455677888888888 66666666667777888899999999997665544444443
No 274
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.24 E-value=0.042 Score=44.46 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=39.5
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
++.+++.||+|+||.+.++..+..++.++....++... ...-++.|++.+..+|
T Consensus 196 ~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 196 FIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFP 249 (310)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHH
Confidence 45789999999999998888888877766655444332 2344577888888877
No 275
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.93 E-value=0.31 Score=43.81 Aligned_cols=161 Identities=12% Similarity=-0.023 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 226 (330)
.+.+..+..+.+......+..-...+-+++++++.+.+ ++....-++..+...+..+...|..|-+.+-.+.++++++.
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 33444444444433333344444555577899999988 88899999999999999999999888888899999999998
Q ss_pred HHHHHHHHHHhC------------CCC--------------------CCC---cchh--HHHHHHH--HHhhcccccccc
Q 043907 227 VIIGSIMAAQLG------------DHG--------------------GCS---EGYA--YLILVLV--CLCSSGYCYSWG 267 (330)
Q Consensus 227 ~~~~~~~~~~~~------------~~~--------------------~~~---~~~~--~~~~~~~--~~~~~~~~~~~~ 267 (330)
++..+--..... +.+ ... .... .+.+.+. .+.+.| ..-..
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG-~Tpi~ 255 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG-ATPIF 255 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC-CCCCc
Confidence 887765222000 000 000 0111 2222222 222222 22333
Q ss_pred cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907 268 PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309 (330)
Q Consensus 268 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (330)
++...|+-|...++.-....|+...+..+|.++|-.+++...
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l 297 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCL 297 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566788888888888899999999998888888877777654
No 276
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.92 E-value=0.13 Score=43.68 Aligned_cols=42 Identities=12% Similarity=-0.051 Sum_probs=33.0
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF 312 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
.++-+.+..|..-||.+.+.|+..++|+---..+.-++.|..
T Consensus 427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 445578888999999999999999999877666666666543
No 277
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=94.78 E-value=1.4 Score=39.03 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=30.0
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
+-+|++.|+.++++......+|..+...+.......
T Consensus 485 ~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 485 SQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999998888655443
No 278
>PRK03612 spermidine synthase; Provisional
Probab=94.45 E-value=1.7 Score=38.17 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=29.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHHh-hcc-chhHHHHHHHHH
Q 043907 283 RSAGQSITVAVNFVFTFLTAQTFLPMLC-HFK-AGIFFFFGGLVL 325 (330)
Q Consensus 283 r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~ 325 (330)
-+...|-.+....+|+.+++.+.+.+.- ..| ..+.++.+.+.+
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL 187 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3566777888899999999999887654 566 445445444443
No 279
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=94.03 E-value=3.1 Score=34.78 Aligned_cols=59 Identities=10% Similarity=-0.038 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 247 YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
+.++......+++...+ -.......+..+..|++++-.+-.+....- .++.....+.++
T Consensus 342 ~~~~~~~l~~~lglsnG-Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl-~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNG-YLTSLIMMYAPKQVKPSEKEAAGNLMVFFL-VGGLALGSLLSW 400 (406)
T ss_pred CchHHHHHHHHHHhccc-hHhhheehhcCCCCChHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 33444444444433322 223455667778888877766555555444 334333333333
No 280
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.76 E-value=0.21 Score=41.66 Aligned_cols=109 Identities=11% Similarity=-0.047 Sum_probs=63.0
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh---hhhhhhhH
Q 043907 213 VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSI 289 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~ 289 (330)
+.+..+.++..++.+++.+..... . ..+........+...+...|.+ +.-|....+.+|.++++ .|.+.+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~---~-~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPP---S-LPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSS---S-C------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcc---h-hhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHH
Confidence 345667777777777765543110 0 0011112333333444333433 33455556667777654 56778888
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907 290 TVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 326 (330)
.+...++|+.++....+++-++.|| ..|.+.++..++
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~ 114 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL 114 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence 8999999999999999999999996 455554444443
No 281
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=93.48 E-value=0.14 Score=36.53 Aligned_cols=54 Identities=28% Similarity=0.307 Sum_probs=43.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
++.+.+.++.|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..+.
T Consensus 55 l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 55 LFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhH
Confidence 466788899999999999999888655543 567788889999999999887665
No 282
>PF12832 MFS_1_like: MFS_1 like family
Probab=93.45 E-value=0.043 Score=33.70 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.6
Q ss_pred cchhhhhhhhchhHHHHHHHHHH
Q 043907 2 LIASSVTRAIGRKVSILIGGVAF 24 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~ 24 (330)
+++|.++||+||++..+......
T Consensus 53 pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 53 PLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHCccHHHHHHHHHH
Confidence 68999999999988887665543
No 283
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=93.43 E-value=5.4 Score=35.53 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=85.5
Q ss_pred HhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC-----
Q 043907 167 LYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH----- 240 (330)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 240 (330)
....++...++.+...+. -.............+++++++|. +||-+.+.++..+...+..++........-..
T Consensus 59 nlv~ylt~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred HHHHHHHHHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 333444456677665555 55566666777778899999998 58888888888888888766665543321110
Q ss_pred ---C-CCCcch--h-HHHHHHHHHhhcccccccccccccccccccc----hhhhh--hhhhHHHHHHHHHHHHHHHhhhh
Q 043907 241 ---G-GCSEGY--A-YLILVLVCLCSSGYCYSWGPLAWLVPSEIFP----LEIRS--AGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 241 ---~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p----~~~r~--~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
+ ..+... . ............+ ..+.-|....+-+|-++ .+.+. .-+.......+.+..++..+..+
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G-~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALG-AGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheec-cCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 0 011111 1 1222222222222 23444554555566666 33333 56667777788888888888877
Q ss_pred HHhhccc
Q 043907 308 MLCHFKA 314 (330)
Q Consensus 308 ~~~~~g~ 314 (330)
.-++.+|
T Consensus 217 iq~~~~w 223 (571)
T KOG1237|consen 217 IQDNVGW 223 (571)
T ss_pred hhhcccc
Confidence 7677765
No 284
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.36 E-value=4.9 Score=34.80 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=25.4
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA 34 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~ 34 (330)
++.+++++|++|++.+.+....+....++.++.
T Consensus 62 ~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 62 LIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 456889999999999988777776666665554
No 285
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.09 E-value=0.37 Score=40.22 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh--h-h------HHHHHHHHHHhhcccccccc-----------------------------
Q 043907 15 VSILIGGVAFLADSAYGGSA--F-N------IYMLIFGRLLLGVGIGFGNQ----------------------------- 56 (330)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~--~-~------~~~~~~~r~l~G~~~g~~~~----------------------------- 56 (330)
|.+.++.++..+|.++..++ + . ...+.++-.+.++|.|+.-+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888884443 2 2 25788888899999998766
Q ss_pred -------------ccCccchHHHHHhhhHHHHHHHHHHhh
Q 043907 57 -------------IKGGWGWRISLAMAAAPASILTIGAIF 83 (330)
Q Consensus 57 -------------~~~~~~wr~~~~~~~~~~~~~~~~~~~ 83 (330)
+.++.+|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 566789999999988777666555443
No 286
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=92.99 E-value=3.2 Score=36.10 Aligned_cols=117 Identities=11% Similarity=0.073 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC----------CCcch--------hHHHHHHH
Q 043907 194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG----------CSEGY--------AYLILVLV 255 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--------~~~~~~~~ 255 (330)
+.++...+..+++++++|.+++-...........++++..+.....-++ .++.. .|......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 4455567788999999999987776666666666665543211100000 00111 11111111
Q ss_pred HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
+..-.-.+...+-+.|.+.+|.++.++..+..++....++++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122233567888999999999999999999999999999999888777
No 287
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=90.61 E-value=1.1 Score=35.76 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=36.7
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 6 SVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 6 ~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
...||+---.-..+..++.+.+.++.+++++.++-+.+-.+..++.|.-..
T Consensus 84 ff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEi 134 (409)
T KOG3880|consen 84 FFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEI 134 (409)
T ss_pred hhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCccee
Confidence 344554333334556677788888899999999988888888888777655
No 288
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=90.05 E-value=6.4 Score=33.87 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=75.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC-----------CCcc-------
Q 043907 186 LSAVVAGG-MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG-----------CSEG------- 246 (330)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------- 246 (330)
.+-+..-+ +.++..++..++.+++.|.+++-..........+++++..+......++ .++.
T Consensus 65 FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili 144 (509)
T COG3202 65 FLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILI 144 (509)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEe
Confidence 34444444 5667777888888999988887776666666666666554311100000 0100
Q ss_pred -hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907 247 -YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311 (330)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
+.|.........-.-.+...+-+.|...+|+...++..+-.++.+...+++..+++.+..++.++
T Consensus 145 ~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 145 VGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01111111111111111222235567778999999999999999999999999998888887664
No 289
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=88.83 E-value=13 Score=31.28 Aligned_cols=57 Identities=9% Similarity=-0.087 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043907 147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMIL 205 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l 205 (330)
..+.+++.........+.+.+-.+++.+++-.+.. +. .......+...+...+...+
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~ 75 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLL 75 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556667777777777766533333 22 33444444444444444333
No 290
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=85.30 E-value=8.4 Score=32.20 Aligned_cols=63 Identities=17% Similarity=0.361 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhCcchhhhH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD-----KFGRKVLFLV 217 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~ 217 (330)
..+....+........ ..|.+++.-|.+-++.+ ...... --.---++..+++| |+||||..++
T Consensus 36 Ll~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhh-hhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceee
Confidence 3344444555555444 78989887777666555 222221 11223466777788 8999987543
No 291
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=82.60 E-value=33 Score=30.09 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 187 SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
.....++..++..++++.+.+|+|=+....+.-+.+.+..+
T Consensus 324 ~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~ 364 (491)
T PF03219_consen 324 FSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL 364 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence 44556667777778888999999988776665554444443
No 292
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=80.52 E-value=2.5 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=30.9
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 043907 3 IASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYML 40 (330)
Q Consensus 3 ~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~ 40 (330)
...++.++..+++.+..+.+...+..+.+++.++.+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 46 LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 44566677777889999999999999999998887654
No 293
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.11 E-value=10 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.4
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
.++.++.+.++-...-.+++.+.....|++.|++-
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999889999999999999999999874
No 294
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=67.86 E-value=90 Score=27.80 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=11.2
Q ss_pred HHhcccccchhHHHHHHHHHHHH
Q 043907 136 KNIIQRKYRPQPVMAILIPFFQQ 158 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (330)
.|.+|++.. +.+++.++....+
T Consensus 252 gDVFR~P~~-~~lls~lvG~G~Q 273 (521)
T PF02990_consen 252 GDVFRPPKH-PMLLSALVGTGIQ 273 (521)
T ss_pred HHHhcCcCC-chHHHhHhcchhh
Confidence 467766554 3444444444444
No 295
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=63.89 E-value=19 Score=25.52 Aligned_cols=29 Identities=7% Similarity=-0.204 Sum_probs=19.4
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHH
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFVFTF 299 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~ 299 (330)
|-+.+....++..|...|+-.+-.+++..
T Consensus 116 YGilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 116 YGILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred hhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 33445555667788889988877766544
No 296
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=62.24 E-value=1e+02 Score=26.37 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccc
Q 043907 187 SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSW 266 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (330)
+...-.+..++..++..+..+|+..+.-......+..++.++..+. ++.+.-++...+. +.+.+.
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------------~~v~~~l~Gv~la--s~ssg~ 128 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------------PSVWVRLLGVVLA--SLSSGL 128 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------------cchhHHHHHHHHH--hhhhhh
Confidence 4445556667777888888898865444444555666666655542 2333333333333 333344
Q ss_pred ccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907 267 GPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313 (330)
Q Consensus 267 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 313 (330)
+-+...-.+..+|+. ..+-.......++.+++...-.+.+ .|
T Consensus 129 GE~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g 170 (402)
T PF02487_consen 129 GEVTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LG 170 (402)
T ss_pred hHHHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hC
Confidence 433332234566643 2233333333455556655544444 44
No 297
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.67 E-value=46 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHh-CcchhhhHhhHHHH
Q 043907 193 GMGTVLAIISMILADKF-GRKVLFLVGGMQML 223 (330)
Q Consensus 193 ~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~ 223 (330)
+.+++.....||+.||+ |.++.-++.+++.+
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~lllG 84 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLG 84 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34444555667888886 55555444444333
No 298
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=57.93 E-value=16 Score=28.72 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=37.5
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHH---------HHHHHhCcchh
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISM---------ILADKFGRKVL 214 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g---------~l~d~~grr~~ 214 (330)
....+|+-.++++.|.++.... .++....+...+..++.| +-.||+|||+.
T Consensus 34 ScWFTYlllfltqiglsp~~~A-mlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 34 SCWFTYLLLFLTQIGLSPSSRA-MLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHHHHHHhcCCcchhH-HHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 3444566666777889888888 777777888888877775 34689999864
No 299
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=57.68 E-value=36 Score=22.39 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHH
Q 043907 181 STSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVII 229 (330)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 229 (330)
...+ -.....+...++.+++.++..|+..+.+-=..+..++.++..++
T Consensus 54 ~~fG-RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFG-RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccch-hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 4455 77888899999999999999999988777676766666655443
No 300
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.41 E-value=29 Score=29.69 Aligned_cols=52 Identities=8% Similarity=0.132 Sum_probs=28.2
Q ss_pred HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhH
Q 043907 163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLV 217 (330)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 217 (330)
|.+..|...+-+.+|.++...+ .++...+.-+--++...++-|-|---+.+-
T Consensus 441 YLMVWwa~~iGeT~gIp~eIMG---LTiLAAGTSIPDlitSvIVARKGlGDMAVS 492 (588)
T KOG1307|consen 441 YLMVWWANIIGETLGIPDEIMG---LTILAAGTSIPDLITSVIVARKGLGDMAVS 492 (588)
T ss_pred HHHHHHHHHcccccCCCHHHhh---hhhhhcCCchHHhhHhhhhcccccccceee
Confidence 4444555555566777776655 233334444445556666666665544433
No 301
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.26 E-value=98 Score=27.44 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=18.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043907 178 LGESTSLLLSAVVAGGMGTVLAIISMILADKF 209 (330)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 209 (330)
++++.-+ .+.+.+.+..++..+++|+.+-|+
T Consensus 356 lSPs~RG-sLmT~~~~l~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 356 LSPSSRG-SLMTAMVLLFVFMGFVAGYVSARL 386 (628)
T ss_pred CCccccc-cHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3555555 556666666666666777666654
No 302
>PRK02237 hypothetical protein; Provisional
Probab=52.75 E-value=63 Score=21.36 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHH
Q 043907 182 TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVII 229 (330)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 229 (330)
..+ -.....+...++.+++.++..|+..+.+-=..+..++.++..++
T Consensus 57 ~~G-RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 57 AFG-RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhh-hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 355 78888999999999999999999987777666766666655443
No 303
>COG1288 Predicted membrane protein [Function unknown]
Probab=52.27 E-value=1.5e+02 Score=25.53 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=14.2
Q ss_pred ccCccchHHHHHhhhHHHHHH
Q 043907 57 IKGGWGWRISLAMAAAPASIL 77 (330)
Q Consensus 57 ~~~~~~wr~~~~~~~~~~~~~ 77 (330)
+.+..+||...++......+.
T Consensus 212 ~~sG~~~Riv~~v~~~~~~i~ 232 (481)
T COG1288 212 FLSGMGLRIVVWVVFTLISII 232 (481)
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 556678999888766544443
No 304
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=51.08 E-value=21 Score=29.93 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=25.7
Q ss_pred cccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907 272 LVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ 303 (330)
Q Consensus 272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 303 (330)
....|..|+++|..+.|+-|..+.....+--.
T Consensus 409 qimQe~VpEseR~vv~gvqnsL~~~ldll~~i 440 (503)
T KOG2601|consen 409 QIMQETVPESERCVVFGVQNSLNSALDLLKDI 440 (503)
T ss_pred HHHHHhcchhhhhhhHhHHHHHHHHHHHHHHh
Confidence 34479999999999999999998877665443
No 305
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=48.44 E-value=1.6e+02 Score=24.52 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=41.5
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907 3 IASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 3 ~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 56 (330)
+.+.+..++|-|+++.++...+...-..- +-+.++.++-.-...|++.+..+.
T Consensus 77 ~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~ 129 (390)
T KOG3097|consen 77 FMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWA 129 (390)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccc
Confidence 45577889999999998887776543322 347788999999999999998887
No 306
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=46.95 E-value=1.9e+02 Score=25.07 Aligned_cols=22 Identities=5% Similarity=0.010 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCc
Q 043907 190 VAGGMGTVLAIISMILADKFGR 211 (330)
Q Consensus 190 ~~~~~~~~~~~~~g~l~d~~gr 211 (330)
...+..++..+....+..|+..
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~ 74 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPV 74 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCc
Confidence 3444445555555555556554
No 307
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=44.91 E-value=1.8e+02 Score=24.20 Aligned_cols=31 Identities=10% Similarity=-0.054 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHhhHHH
Q 043907 192 GGMGTVLAIISMILADKFGRKVLFLVGGMQM 222 (330)
Q Consensus 192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 222 (330)
...-+..+.+.+.+.+++|-|..+.++....
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y 98 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPY 98 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555666668999999999887654433
No 308
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=43.22 E-value=2.4e+02 Score=24.98 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=26.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907 189 VVAGGM-GTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG 230 (330)
Q Consensus 189 ~~~~~~-~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 230 (330)
...++. .++...+++.+.+|.|=....++.-+.+.+..+++.
T Consensus 328 ~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lFF 370 (509)
T COG3202 328 IWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444 445567777888888877666666555555544444
No 309
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=42.59 E-value=78 Score=21.43 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=7.2
Q ss_pred HHHhhcCCCchh
Q 043907 79 IGAIFLPETPNS 90 (330)
Q Consensus 79 ~~~~~~pesp~~ 90 (330)
++++.+|+.|..
T Consensus 58 ~l~~~lp~~P~~ 69 (118)
T PRK10697 58 ILSFALDPMPDN 69 (118)
T ss_pred HHHHhccCCccc
Confidence 335557877753
No 310
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=42.34 E-value=1.3e+02 Score=26.66 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=33.8
Q ss_pred HHHHhhhhHhHHHhHHHHHHh--cCCCCchhhHHHHH--HHHHHHHHHHH-HHHHHHHHhCcchhhhH-hhHHHHHHHHH
Q 043907 155 FFQQVTGINIVGLYSPVLFRT--LKLGESTSLLLSAV--VAGGMGTVLAI-ISMILADKFGRKVLFLV-GGMQMLVSQVI 228 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~--~~~~~~~~~~~-~~g~l~d~~grr~~~~~-~~~~~~~~~~~ 228 (330)
.+.+.........-.|.++++ .+.+-++.+ .... ...-.-++-++ +=..-+.|+||||..++ ...+.++.++.
T Consensus 9 Y~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~-~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~ 87 (544)
T PF13000_consen 9 YFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQA-IFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLY 87 (544)
T ss_pred HHHcCcccccccccchhhhccccCCCChhHhe-eeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHH
Confidence 333434433333456777776 455554444 2211 11222222222 22233447899987554 33444444444
Q ss_pred HH
Q 043907 229 IG 230 (330)
Q Consensus 229 ~~ 230 (330)
++
T Consensus 88 l~ 89 (544)
T PF13000_consen 88 LS 89 (544)
T ss_pred HH
Confidence 33
No 311
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=36.04 E-value=50 Score=21.76 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=20.1
Q ss_pred CccchHHHHHhhhHHHHHH-HHHHhhcCCCc
Q 043907 59 GGWGWRISLAMAAAPASIL-TIGAIFLPETP 88 (330)
Q Consensus 59 ~~~~wr~~~~~~~~~~~~~-~~~~~~~pesp 88 (330)
+..+|+.++++....+++. .+.+.+.||+.
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4468999888876655554 44466678875
No 312
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=34.41 E-value=2e+02 Score=21.47 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Q 043907 190 VAGGMGTVLAIISMILADKFGRK 212 (330)
Q Consensus 190 ~~~~~~~~~~~~~g~l~d~~grr 212 (330)
.+-++..++..+.|++.||..+|
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~~ 112 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRKR 112 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcc
Confidence 34567788899999999998863
No 313
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=33.94 E-value=3e+02 Score=23.57 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML 223 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 223 (330)
..-.+-+...++...+.|...|+..|+|++.....+.-
T Consensus 67 vyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqN 104 (503)
T KOG2601|consen 67 VYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQN 104 (503)
T ss_pred HHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhcc
Confidence 33444455666777778888999999988766655433
No 314
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=33.61 E-value=86 Score=20.32 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Q 043907 189 VVAGGMGTVLAIISMILADKFGRK 212 (330)
Q Consensus 189 ~~~~~~~~~~~~~~g~l~d~~grr 212 (330)
....+..++.+.+.|.+.||.+||
T Consensus 82 ~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 82 WITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344566677888999999999886
No 315
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=33.60 E-value=61 Score=15.45 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=3.8
Q ss_pred HHHhhcCCCch
Q 043907 79 IGAIFLPETPN 89 (330)
Q Consensus 79 ~~~~~~pesp~ 89 (330)
....+.+|+||
T Consensus 18 ffAI~FRePPr 28 (29)
T PF01405_consen 18 FFAIFFREPPR 28 (29)
T ss_dssp HHHHHSS----
T ss_pred HhhhhccCCCC
Confidence 33455778775
No 316
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.40 E-value=77 Score=26.13 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043907 186 LSAVVAGGMGTVLAIISM 203 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g 203 (330)
+..+...+.+-+.+++..
T Consensus 306 lAvtLs~vanPLAs~l~m 323 (439)
T KOG4255|consen 306 LAVTLSSVANPLASFLAM 323 (439)
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 344444444444444443
No 317
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.78 E-value=2.3e+02 Score=21.40 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHHhhcccccccc---ccCccchHHHHHhhh-HHHHHHHHHHhhc
Q 043907 41 IFGRLLLGVGIGFGNQ---IKGGWGWRISLAMAA-APASILTIGAIFL 84 (330)
Q Consensus 41 ~~~r~l~G~~~g~~~~---~~~~~~wr~~~~~~~-~~~~~~~~~~~~~ 84 (330)
...+...|++.+.... +.+..+..+.-.+.+ +.++..-+...++
T Consensus 21 ~~~~~~~~i~~~ln~~f~P~i~~~~p~lvilV~avi~gl~~~i~~~~l 68 (201)
T COG1422 21 MFSSIRDGIGGALNVVFGPLLSPLPPHLVILVAAVITGLYITILQKLL 68 (201)
T ss_pred HhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666555444 223234444433333 3333344444443
No 318
>PRK10692 hypothetical protein; Provisional
Probab=30.59 E-value=1.3e+02 Score=18.94 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 043907 13 RKVSILIGGVAFLADSAYGG 32 (330)
Q Consensus 13 rk~~l~~~~~~~~~~~~~~~ 32 (330)
||...+++..++.++.+.+.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv 22 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMV 22 (92)
T ss_pred chhhHHHhhHHHHHHHHHHH
Confidence 78888888888888877654
No 319
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=30.11 E-value=1.7e+02 Score=19.44 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=29.9
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhccccccc
Q 043907 6 SVTRAIGRKVSILIGGVAFLADSAYGGSA-FNIYMLIFGRLLLGVGIGFGN 55 (330)
Q Consensus 6 ~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~ 55 (330)
+.+|.+.|+...+...+...++....+.+ ++.+.=..--.-.|+|..+..
T Consensus 22 K~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~ 72 (106)
T COG2076 22 KYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTA 72 (106)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 46788888888887777777777666665 333333333344455544433
No 320
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=29.85 E-value=17 Score=18.03 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=0.0
Q ss_pred hhhhch
Q 043907 8 TRAIGR 13 (330)
Q Consensus 8 ~d~~Gr 13 (330)
+|||||
T Consensus 3 sd~FGR 8 (36)
T PF08080_consen 3 SDRFGR 8 (36)
T ss_dssp ------
T ss_pred cchhcc
Confidence 355555
No 321
>PRK13712 conjugal transfer protein TrbA; Provisional
Probab=28.64 E-value=49 Score=20.80 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=39.6
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcccccccc------ccCccchHHHHHhhhHHHHH
Q 043907 5 SSVTRAIGRKVSILIGGVAFLADSAYGGSA--FNIYMLIFGRLLLGVGIGFGNQ------IKGGWGWRISLAMAAAPASI 76 (330)
Q Consensus 5 g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~------~~~~~~wr~~~~~~~~~~~~ 76 (330)
|+.-.--+.|++++++.+.+.+-.+.+-.. .|++.++-+-.=||...-.... +......|-.|......+.-
T Consensus 22 gyffs~~ndr~mfllsslvflvini~~l~vl~~sl~flcgaimnq~aa~vvsmv~~~lp~vtsfd~frrificimlss~w 101 (115)
T PRK13712 22 GYFFSERNDRKMFLLSSLVFLVINIACLYVLTASLWFLCGAIMNQGAAMVVSMVISSLPNVTSFDSFRRIFICIMLSSVW 101 (115)
T ss_pred eEEeecCCCccEEEhHhHHHHHHhHhhheeecHHHHHHHHHHHcCCceeeeehhhhcCCCcchhhhhhhhhheeeehhhh
Confidence 433333345777788888887777776654 4455444443334433222221 33333566666544433333
Q ss_pred HHHHHhh
Q 043907 77 LTIGAIF 83 (330)
Q Consensus 77 ~~~~~~~ 83 (330)
..+.+++
T Consensus 102 sgvmwff 108 (115)
T PRK13712 102 SGVMWFF 108 (115)
T ss_pred hhhHHHH
Confidence 3333443
No 322
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=27.79 E-value=1.7e+02 Score=18.67 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhhhhHhHHHhHHHHHHh
Q 043907 146 QPVMAILIPFFQQVTGINIVGLYSPVLFRT 175 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (330)
+.........+..+.++.....+.|.++..
T Consensus 16 r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~ 45 (91)
T PF04341_consen 16 RLAWPLSAIFLVLYFGFVLLSAFAPELMAT 45 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHcC
Confidence 334444444555556677778888888853
No 323
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=27.35 E-value=86 Score=15.17 Aligned_cols=10 Identities=30% Similarity=0.374 Sum_probs=6.4
Q ss_pred HHhhcCCCch
Q 043907 80 GAIFLPETPN 89 (330)
Q Consensus 80 ~~~~~pesp~ 89 (330)
...+.+|+|+
T Consensus 19 FAIfFRepPr 28 (31)
T PRK11875 19 FAIAFRDPPK 28 (31)
T ss_pred HhhhccCCCC
Confidence 3445788876
No 324
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=26.60 E-value=4.5e+02 Score=24.73 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=33.7
Q ss_pred hhhhhhh----hchhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHhhcccccccc
Q 043907 4 ASSVTRA----IGRKVSILIGGVAFLADSAYGGSAFN-IYMLIFGRLLLGVGIGFGNQ 56 (330)
Q Consensus 4 ~g~l~d~----~Grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~ 56 (330)
++-++|. -||.+-++++..++.++++...+... .+.+...-++.+++.+....
T Consensus 43 a~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~mlga 100 (701)
T TIGR01667 43 AAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILLGA 100 (701)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4455554 35678888899999888888776644 44555555555555554433
No 325
>CHL00031 psbT photosystem II protein T
Probab=25.00 E-value=1e+02 Score=15.21 Aligned_cols=10 Identities=50% Similarity=0.713 Sum_probs=6.6
Q ss_pred HHhhcCCCch
Q 043907 80 GAIFLPETPN 89 (330)
Q Consensus 80 ~~~~~pesp~ 89 (330)
...+++|+|+
T Consensus 19 FAI~FRePPr 28 (33)
T CHL00031 19 FAIFFREPPK 28 (33)
T ss_pred HhheecCCCC
Confidence 3445788886
No 326
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=24.55 E-value=1.6e+02 Score=19.12 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=14.6
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 043907 10 AIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGR 44 (330)
Q Consensus 10 ~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 44 (330)
|.|+|.... ..+.++..+++-..+.++..|
T Consensus 65 r~~ir~~w~-----~i~~t~~vgvs~glPLyL~lR 94 (97)
T PF11196_consen 65 RLGIRHWWL-----YIVLTFFVGVSFGLPLYLYLR 94 (97)
T ss_pred HhccchHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 455555444 333444444445555555554
No 327
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.13 E-value=7.7e+02 Score=25.06 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=14.4
Q ss_pred ccCccchHHHHHhhhHHHHHHHHH
Q 043907 57 IKGGWGWRISLAMAAAPASILTIG 80 (330)
Q Consensus 57 ~~~~~~wr~~~~~~~~~~~~~~~~ 80 (330)
+.-.++||......+...++.+..
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~ 825 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSG 825 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344468998877766554444433
No 328
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.74 E-value=44 Score=23.02 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=7.3
Q ss_pred HHHHHhhhHHHHHHHH
Q 043907 64 RISLAMAAAPASILTI 79 (330)
Q Consensus 64 r~~~~~~~~~~~~~~~ 79 (330)
||++++..++.+++++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 4555544444433333
No 329
>PRK11588 hypothetical protein; Provisional
Probab=23.45 E-value=5.4e+02 Score=23.02 Aligned_cols=31 Identities=13% Similarity=-0.030 Sum_probs=17.6
Q ss_pred hhhhhhhchhHHH--HHHHHHHHHHHHHHhhhh
Q 043907 5 SSVTRAIGRKVSI--LIGGVAFLADSAYGGSAF 35 (330)
Q Consensus 5 g~l~d~~Grk~~l--~~~~~~~~~~~~~~~~~~ 35 (330)
+++.+|++.|..+ .+.+++++++....+.+.
T Consensus 137 ~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~E 169 (506)
T PRK11588 137 LALIRKTRGNEILFIPVLFILFSLGGAVFGMGE 169 (506)
T ss_pred HHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhH
Confidence 5667777766433 445555555555555544
No 330
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.41 E-value=85 Score=22.43 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhCc
Q 043907 197 VLAIISMILADKFGR 211 (330)
Q Consensus 197 ~~~~~~g~l~d~~gr 211 (330)
+..+--|.++-.+..
T Consensus 111 llGisYGilSaSWD~ 125 (153)
T PF11947_consen 111 LLGISYGILSASWDP 125 (153)
T ss_pred HHhhhhhhcccccCC
Confidence 333444555555543
No 331
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=22.79 E-value=86 Score=17.99 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=16.1
Q ss_pred cchHHHHHhhhHHHHHHHHHH
Q 043907 61 WGWRISLAMAAAPASILTIGA 81 (330)
Q Consensus 61 ~~wr~~~~~~~~~~~~~~~~~ 81 (330)
-|||...++++..+++.+.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred ccccchhhHHHHHHHHHHHHh
Confidence 479999888888877766553
No 332
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=22.48 E-value=1.8e+02 Score=18.26 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 043907 13 RKVSILIGGVAFLADSAYGG 32 (330)
Q Consensus 13 rk~~l~~~~~~~~~~~~~~~ 32 (330)
||....++..++.++.+.+.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv 22 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMV 22 (89)
T ss_pred chhhHHHhhHHHHHhHHHHH
Confidence 77778888888887776653
No 333
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=1.2e+02 Score=19.99 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907 181 STSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS 225 (330)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 225 (330)
...+ -.....+...++.++..++.+|+..+.+.=..+..++.++
T Consensus 55 ~a~G-RvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G 98 (109)
T COG1742 55 AAFG-RVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAG 98 (109)
T ss_pred hhhh-hHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhc
Confidence 3344 6777888889999999999999987776666665555444
No 334
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.86 E-value=7.3e+02 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 043907 190 VAGGMGTVLAIISMILADKFG 210 (330)
Q Consensus 190 ~~~~~~~~~~~~~g~l~d~~g 210 (330)
+.+.++.+|..+...+..-+|
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred cccccchHHHHHHHHHHHHHh
Confidence 345566666666666555555
No 335
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.92 E-value=2.3e+02 Score=18.19 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=17.9
Q ss_pred HHHHHHhhhhHHhhccchhHHHHHHHHH
Q 043907 298 TFLTAQTFLPMLCHFKAGIFFFFGGLVL 325 (330)
Q Consensus 298 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (330)
+.+..++.|...+..++..+.+.+++.+
T Consensus 35 ~aiVg~i~Gf~~Qqls~tvy~vg~~~v~ 62 (101)
T KOG4112|consen 35 GAIVGFIYGFAQQQLSVTVYIVGAGFVF 62 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888766666555443
No 336
>PRK13595 ubiA prenyltransferase; Provisional
Probab=20.87 E-value=4.7e+02 Score=21.33 Aligned_cols=69 Identities=14% Similarity=-0.005 Sum_probs=41.2
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc----ccCccchHHHHHhhhHHHHH
Q 043907 7 VTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ----IKGGWGWRISLAMAAAPASI 76 (330)
Q Consensus 7 l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~----~~~~~~wr~~~~~~~~~~~~ 76 (330)
+.-++|.|+...++..++.++..++...+....+. .-...+.-..-... -..+-+||...+..-+.+.+
T Consensus 205 lpv~lG~r~a~~~a~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 277 (292)
T PRK13595 205 VATTLGVRGTALYALAWFLLAGALLWPVSRLTALA-LWLICGGMALALWRRPTPETAHRLYPLSIVTPWIVGTV 277 (292)
T ss_pred chHHhCcHhHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHhcCCCHHHHhccchHHHHHhHHHHHH
Confidence 34579999999999999999999888776554443 11222211111111 23346798765555444433
No 337
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.84 E-value=2.6e+02 Score=18.37 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=4.1
Q ss_pred HHHHHhCcch
Q 043907 204 ILADKFGRKV 213 (330)
Q Consensus 204 ~l~d~~grr~ 213 (330)
|+-++++-.+
T Consensus 65 WLD~~~~t~~ 74 (100)
T TIGR02230 65 WLDRHYPSPF 74 (100)
T ss_pred HHHhhcCCCc
Confidence 3333344443
No 338
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.33 E-value=1.4e+02 Score=19.34 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHH
Q 043907 14 KVSILIGGVAFLA 26 (330)
Q Consensus 14 k~~l~~~~~~~~~ 26 (330)
|+++++|+..+.+
T Consensus 3 kw~l~Lc~~SF~~ 15 (95)
T PF13334_consen 3 KWVLLLCIASFCA 15 (95)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444433333
Done!