Query 043907
Match_columns 330
No_of_seqs 439 out of 1237
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 16:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-38 4.6E-43 271.8 25.1 313 2-329 73-457 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.9E-30 2E-34 216.2 14.5 294 2-327 80-426 (451)
3 3o7q_A L-fucose-proton symport 99.9 3.8E-26 1.3E-30 192.1 22.4 269 2-323 79-421 (438)
4 2gfp_A EMRD, multidrug resista 99.9 1E-26 3.5E-31 191.6 2.0 274 2-327 53-368 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 7.3E-24 2.5E-28 180.8 17.7 316 2-327 72-464 (491)
6 2cfq_A Lactose permease; trans 99.9 7.5E-24 2.6E-28 176.7 5.8 149 164-327 238-392 (417)
7 2xut_A Proton/peptide symporte 99.8 1.2E-19 4.1E-24 156.0 10.7 82 2-83 72-197 (524)
8 3o7q_A L-fucose-proton symport 99.6 3.2E-14 1.1E-18 119.5 14.6 154 148-313 28-182 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.6 1.3E-14 4.6E-19 122.2 10.8 170 145-326 27-198 (451)
10 2gfp_A EMRD, multidrug resista 99.5 1.7E-13 6E-18 112.5 11.8 158 155-327 9-167 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.5 4.5E-13 1.5E-17 114.2 12.7 160 151-325 18-187 (491)
12 2xut_A Proton/peptide symporte 99.4 2.2E-12 7.6E-17 110.8 12.9 153 160-326 26-190 (524)
13 4gc0_A D-xylose-proton symport 99.1 3.1E-10 1E-14 96.7 11.2 124 186-310 59-187 (491)
14 2cfq_A Lactose permease; trans 99.0 4.2E-10 1.4E-14 93.7 5.9 150 158-319 19-172 (417)
15 2g9p_A Antimicrobial peptide l 83.8 0.36 1.2E-05 20.3 0.7 14 3-16 2-15 (26)
16 2bzw_B BCL2-antagonist of cell 36.7 14 0.00046 16.2 0.8 12 2-13 2-13 (27)
17 3arc_T Photosystem II reaction 34.1 41 0.0014 15.8 3.1 11 79-89 18-28 (32)
18 1cmk_I CAMP-dependent protein 25.3 9.4 0.00032 16.9 -0.6 10 8-17 9-18 (26)
19 2jpj_A Bacteriocin lactococcin 20.1 27 0.00092 16.6 0.3 8 8-15 30-37 (39)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-38 Score=271.82 Aligned_cols=313 Identities=23% Similarity=0.430 Sum_probs=242.9
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHhhcccccccc-------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGG------------------SAFNIYMLIFGRLLLGVGIGFGNQ------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~------- 56 (330)
+++|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|...+
T Consensus 73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~ 152 (491)
T 4gc0_A 73 ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA 152 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998 478999999999999999998766
Q ss_pred ----------------------------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCC
Q 043907 57 ----------------------------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSD 96 (330)
Q Consensus 57 ----------------------------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~ 96 (330)
.....+||+.+.+..++.++..+..+++||||+|+..+++
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 1123578999999999888888888999999999999999
Q ss_pred cHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc
Q 043907 97 DHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL 176 (330)
Q Consensus 97 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (330)
.|++++.+++..++++.+++..+.++..+++++.. .... ....++.........+.+..+.+....|.|.+.+..
T Consensus 233 -~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4gc0_A 233 -QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL 307 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence 99999988887765544433333322222211111 1111 223345566677777777888888999999999988
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907 177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC 256 (330)
Q Consensus 177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
+.+..... ......++...++.++.+++.||+|||+.++.+...+.++.+.+..... .....+.......
T Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 308 GASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSML 377 (491)
T ss_dssp SCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHH
T ss_pred CCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---------cccchHHHHHHHH
Confidence 88877777 7778888999999999999999999999999988888887777665432 1233344455555
Q ss_pred HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc------c-chhHHHHHHHHHHhhc
Q 043907 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF------K-AGIFFFFGGLVLIMTS 329 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~ 329 (330)
.+..+++.+++++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.. + ...|++++++++++.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 55666677788888899999999999999999999999999999999988765432 2 3567788877776543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=5.9e-30 Score=216.16 Aligned_cols=294 Identities=14% Similarity=0.082 Sum_probs=201.7
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcccccccc---------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS----AFNIYMLIFGRLLLGVGIGFGNQ--------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~--------------------- 56 (330)
+++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+...+
T Consensus 80 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 159 (451)
T 1pw4_A 80 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 159 (451)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH
Confidence 57899999999999999999999999999999 99999999999999999997766
Q ss_pred ------------------ccCccc-hHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907 57 ------------------IKGGWG-WRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA 116 (330)
Q Consensus 57 ------------------~~~~~~-wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (330)
+.+..+ ||+.|++.++..++..+ ..+++||+|+....+++ +++. ++.+.
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~ 228 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEYK----------NDYPD 228 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTTC----------CC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhhc----------ccccc
Confidence 344567 99999998877766544 45668998875322211 1000 00000
Q ss_pred HHHHHHHhccccccCccc--hHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHH
Q 043907 117 ELNDLIRASSTSKSITQP--FKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGG 193 (330)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 193 (330)
+ .+++ ++++....+ .++.++ ++.++...+..+...........+.|.++++ .|+++.+.+ .......+
T Consensus 229 ~---~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~ 299 (451)
T 1pw4_A 229 D---YNEK-AEQELTAKQIFMQYVLP----NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEY 299 (451)
T ss_dssp --------------CCTHHHHHHTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHH
T ss_pred c---chhh-hhcccccccchHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHH
Confidence 0 0000 000111111 233332 2344444444555555667778888998876 799998888 88899999
Q ss_pred HHHHHHHHHHHHHHHh--CcchhhhHhhHHHH-HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccc
Q 043907 194 MGTVLAIISMILADKF--GRKVLFLVGGMQML-VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLA 270 (330)
Q Consensus 194 ~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (330)
+.+++.++.+++.||+ |||+.+..+..+.. ++.+.+... +..+.+.........+.+.+. ..+..
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~-~~~~~ 367 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYG-PVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhc-hHHHH
Confidence 9999999999999999 99988877666555 333333221 112333333444444333332 23344
Q ss_pred ccccccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907 271 WLVPSEIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM 327 (330)
Q Consensus 271 ~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 327 (330)
..+..|.+|++.|+++.|+.+....+ +..++|.+.+.+.+..|+ ..+++.+++++++
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 426 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 426 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 56778999999999999999999999 999999999999999884 5666666555544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=3.8e-26 Score=192.13 Aligned_cols=269 Identities=10% Similarity=0.069 Sum_probs=187.8
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhcccccccc----------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYG---GSAFNIYMLIFGRLLLGVGIGFGNQ---------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~---------------------- 56 (330)
+++|+++||+|||+++..+.++.+++.+++ +++++++.++++|+++|++.|...+
T Consensus 79 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 158 (438)
T 3o7q_A 79 IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA 158 (438)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHH
Confidence 578999999999999999999999999999 8889999999999999999998776
Q ss_pred -----------------cc-Cccc-------------------------hHHHHHhhhHHHHHHHHHHhh--cCCCchhh
Q 043907 57 -----------------IK-GGWG-------------------------WRISLAMAAAPASILTIGAIF--LPETPNSK 91 (330)
Q Consensus 57 -----------------~~-~~~~-------------------------wr~~~~~~~~~~~~~~~~~~~--~pesp~~~ 91 (330)
+. +..+ ||+.|++.+...++..+..++ .||+++.
T Consensus 159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 237 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD- 237 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc-
Confidence 22 3233 999998777665554444333 4555431
Q ss_pred hccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHH
Q 043907 92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPV 171 (330)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (330)
+++ + +++++.+.++++.++++..+. ..+..+...........+.|.
T Consensus 238 --~~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 238 --NHS-D---------------------------AKQGSFSASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp --CCC-C---------------------------SSTTSHHHHHHHHTTCSHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccc-c---------------------------ccccchhhhHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 001 0 011111234555555433332 223333333445666778888
Q ss_pred H-HHhc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH
Q 043907 172 L-FRTL-KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY 249 (330)
Q Consensus 172 ~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+ .++. |.++.+.+ .......++.+++.++.+++.||+|||+.+..+..+..++.+.+... +..+
T Consensus 284 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 349 (438)
T 3o7q_A 284 YAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV 349 (438)
T ss_dssp HHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH
T ss_pred HhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH
Confidence 8 7664 99998888 88888999999999999999999999999988887777766555442 2222
Q ss_pred HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHH
Q 043907 250 LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGL 323 (330)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~ 323 (330)
......+.+.+.+.. .+....+..|.+|++ ++++.++.. .+.+++.++|.+.+.+.|..| + ..|++.+++
T Consensus 350 -~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 350 -GLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp -HHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred -HHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 222333344444433 345566667889976 888888877 677999999999999999988 5 444444333
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=1e-26 Score=191.61 Aligned_cols=274 Identities=17% Similarity=0.184 Sum_probs=185.3
Q ss_pred cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907 2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------- 56 (330)
++.|+++||+|||+++..+..+..++.+..++++|++.+++.|+++|++.+...+
T Consensus 53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 53 LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG 132 (375)
T ss_dssp TTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999997665
Q ss_pred --------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907 57 --------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL 121 (330)
Q Consensus 57 --------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (330)
+.+..+||+.|.+.++..++..+ ..+++||+|+.. ++
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------- 184 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP------------------------- 184 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC-------------------------
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc-------------------------
Confidence 55557899999988877666555 345578876421 01
Q ss_pred HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH
Q 043907 122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAI 200 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+++.+.++++.++++. +....+..+...........+.|.+.++ .|.++.+.+ .......++.+++.+
T Consensus 185 ------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~ 253 (375)
T 2gfp_A 185 ------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAW 253 (375)
T ss_dssp ------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHH
T ss_pred ------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 0111223444444322 2223333333344455666777777655 788888888 888888999999999
Q ss_pred HHHHHHHHhCcchhhhHhhHH-HHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907 201 ISMILADKFGRKVLFLVGGMQ-MLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP 279 (330)
Q Consensus 201 ~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 279 (330)
+.+++.||.+++. ..+... ...+...+..... ++.+.+.......+.+.+.+.. .+....+..|..|
T Consensus 254 ~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p 321 (375)
T 2gfp_A 254 FAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP 321 (375)
T ss_dssp HHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC
Confidence 9999999988732 222222 2222111111100 0123333334444444444433 3455666789998
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907 280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 327 (330)
Q Consensus 280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (330)
++|+++.|+.+....++..++|.+.+.+.+..++...+...++++++
T Consensus 322 -~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 368 (375)
T 2gfp_A 322 -FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLI 368 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 89999999999999999999999999998877655444444444443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=7.3e-24 Score=180.82 Aligned_cols=316 Identities=15% Similarity=0.083 Sum_probs=183.6
Q ss_pred cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907 2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------ 56 (330)
Q Consensus 2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------ 56 (330)
+++|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.|...+
T Consensus 72 ~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 151 (491)
T 4aps_A 72 TIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIF 151 (491)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHH
Confidence 578999999 8999999999999999999999999999999999999999998776
Q ss_pred -----------------ccCccchHHHHHhhhHHHHHHHHHHhh-cCCCchh---hhccCCcHHHHHHHHHH--------
Q 043907 57 -----------------IKGGWGWRISLAMAAAPASILTIGAIF-LPETPNS---KIQRSDDHQKAQKMLQR-------- 107 (330)
Q Consensus 57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~---~~~~~~~~~~a~~~~~~-------- 107 (330)
+.+..|||+.|++.++..++..+..++ .|+..+. ..++.++.++.++..+.
T Consensus 152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 231 (491)
T 4aps_A 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF 231 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHH
Confidence 445578999999987766555444332 2221100 00111113333332221
Q ss_pred --------HhcccchhHHHHHHH---------HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHH
Q 043907 108 --------IRGISDVKAELNDLI---------RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSP 170 (330)
Q Consensus 108 --------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (330)
..+..+.++...... ...+..++.+.+ ...+++.. . .....+........+.....+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4aps_A 232 IAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLRVV-S-YIPLFIAAVLFWAIEEQGSVVLA 307 (491)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CT-T-HHHHHHHHHHHHHHHGGGGTHHH
T ss_pred HHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHHHH-H-HHHHHHHHHHHHHHHhhccHHHH
Confidence 011111111000000 000000000000 00111111 1 11122222222233344455666
Q ss_pred HHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhh-----HhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907 171 VLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFL-----VGGMQMLVSQVIIGSIMAAQLGDHGGCS 244 (330)
Q Consensus 171 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
.+.++ .+.+..+.+ .......+...++.++.+++.||++||+... .+..+.+++.+.+....... . ..+
T Consensus 308 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~ 382 (491)
T 4aps_A 308 TFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY--G--TSG 382 (491)
T ss_dssp HHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC--C--CCT
T ss_pred HHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc--C--CCC
Confidence 66654 566655566 6778888899999999999999999987655 55555555555444432110 0 001
Q ss_pred cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHH
Q 043907 245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLV 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (330)
+.+.+.......+.+.+.+. ..+....++.|.+|++.|+++.|+.+....++..+++.+.+.+.+......|.++++++
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 12333333444444444332 23455667789999999999999999999999999999999887654456666665555
Q ss_pred HHh
Q 043907 325 LIM 327 (330)
Q Consensus 325 ~~~ 327 (330)
+++
T Consensus 462 ~~~ 464 (491)
T 4aps_A 462 VVL 464 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=7.5e-24 Score=176.67 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=97.3
Q ss_pred hHHHhHHHHHHhc-C---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907 164 IVGLYSPVLFRTL-K---LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239 (330)
Q Consensus 164 ~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
....+.|.++++. + .+....+ .......+...++.++.++++||+|||+.+..+..+.++..+.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------- 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------- 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3344566665442 2 1223334 56667777888999999999999999998887776666554443221
Q ss_pred CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHH-HHHHHHHHHHHHHhhhhHHhhcc-chhH
Q 043907 240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFVFTFLTAQTFLPMLCHFK-AGIF 317 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~ 317 (330)
++.+.......+...+.. ...+..+.+++|.+|++.|+++.++. +....+++.++|.+.|.+.+..| ...|
T Consensus 310 ------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 310 ------TSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp ------CSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 122222222222222222 12223356778999999999999984 88888999999999999998877 3566
Q ss_pred HHHHHHHHHh
Q 043907 318 FFFGGLVLIM 327 (330)
Q Consensus 318 ~~~~~~~~~~ 327 (330)
.+.+++++++
T Consensus 383 ~~~~~~~l~~ 392 (417)
T 2cfq_A 383 LVLGLVALGF 392 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=1.2e-19 Score=156.01 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=69.9
Q ss_pred cchhhhhhhh-chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhcccccccc-----------------------
Q 043907 2 LIASSVTRAI-GRKVSILIGGVAFLADSAYGGSAF-NIYMLIFGRLLLGVGIGFGNQ----------------------- 56 (330)
Q Consensus 2 ~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~----------------------- 56 (330)
+++|+++||+ |||+++..+.++..++.++.++++ +++.+++.|+++|++.+...+
T Consensus 72 ~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 151 (524)
T 2xut_A 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFD 151 (524)
T ss_dssp HHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHH
Confidence 5789999999 999999999999999999999998 999999999999999988765
Q ss_pred -------------------ccCccchHHHHHhhhHHHHHHHHHHhh
Q 043907 57 -------------------IKGGWGWRISLAMAAAPASILTIGAIF 83 (330)
Q Consensus 57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~ 83 (330)
+.+..+||+.|++.++..++..+..++
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 334578999999888776665554443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=3.2e-14 Score=119.45 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907 148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 227 (330)
+....+..+.............|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3344444444445556677778888899999999999 999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907 228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP 307 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 307 (330)
....... .++.+...+...+.+.+.+.. .+....+++|.+|+++|+++.++.+....+|..+++.+.+.
T Consensus 107 ~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 107 LFWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7733211 134455555555555555433 33556777999999999999999999999999999999999
Q ss_pred HH-hhcc
Q 043907 308 ML-CHFK 313 (330)
Q Consensus 308 ~~-~~~g 313 (330)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 88 4443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=1.3e-14 Score=122.21 Aligned_cols=170 Identities=13% Similarity=0.034 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907 145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 224 (330)
++.+....+..+.............|.+.+++ .+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 34445555555555555566677788888888 9999998 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907 225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT 304 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 304 (330)
+.+...+.... .++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+
T Consensus 105 ~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 105 VMLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88887761100 033444455555555444433 34556677899999999999999999999999999999
Q ss_pred hhhHHhhcc-c-hhHHHHHHHHHH
Q 043907 305 FLPMLCHFK-A-GIFFFFGGLVLI 326 (330)
Q Consensus 305 ~~~~~~~~g-~-~~~~~~~~~~~~ 326 (330)
.+.+.+..+ | ..|++.++++++
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAIL 198 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 999888887 6 456655554443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.49 E-value=1.7e-13 Score=112.54 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=123.1
Q ss_pred HHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHH
Q 043907 155 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMA 234 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 234 (330)
.+.............|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 85 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--
Confidence 333344455666677888889999999999 99999999999999999999999999999999998888888777664
Q ss_pred HHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907 235 AQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA 314 (330)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 314 (330)
++.+.......+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|
T Consensus 86 -----------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 86 -----------SSLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred -----------ccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 344444444444444433 23445566778999999999999999999999999999999999888785
Q ss_pred -hhHHHHHHHHHHh
Q 043907 315 -GIFFFFGGLVLIM 327 (330)
Q Consensus 315 -~~~~~~~~~~~~~ 327 (330)
..+++.+++.++.
T Consensus 154 ~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 154 RACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 5566666555544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=4.5e-13 Score=114.17 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=118.4
Q ss_pred HHHHHHHHhhhhHhHHHhHHHHHH-h-----cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHH
Q 043907 151 ILIPFFQQVTGINIVGLYSPVLFR-T-----LKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQML 223 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~ 223 (330)
.....+....+++....+.+.+++ + +|.+..+.+ +..+...++..++.++.|+++|| +|||+.+..+..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 333333344455556566666664 4 899999999 99999999999999999999999 899999999988888
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh--hhhhhhHHHHHHHHHHHHH
Q 043907 224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVNFVFTFLT 301 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~ 301 (330)
++.+..... ++.+...+...+.+.+.+.. .+....+++|.+|+++ |+++.++.+....++..++
T Consensus 97 ~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 97 LGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp HHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 887766542 33444444445554444433 3455677789999888 7788888889999999999
Q ss_pred HHhhhhHHhhccc-hhHHHHHHHHH
Q 043907 302 AQTFLPMLCHFKA-GIFFFFGGLVL 325 (330)
Q Consensus 302 ~~~~~~~~~~~g~-~~~~~~~~~~~ 325 (330)
|.+.+.+.+..|| +.|++.++..+
T Consensus 163 ~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 163 PLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999998885 55555544443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.41 E-value=2.2e-12 Score=110.81 Aligned_cols=153 Identities=15% Similarity=0.038 Sum_probs=113.8
Q ss_pred hhhHhHHHhHHHHH-HhcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhhHhhHHHHHHHHHHHH
Q 043907 160 TGINIVGLYSPVLF-RTLK------LGESTSLLLSAVVAGGMGTVLAIISMILADKF-GRKVLFLVGGMQMLVSQVIIGS 231 (330)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~ 231 (330)
.+++....+.+.++ ++.| +++.+.+ +..+...++..++.++.|+++||+ |||+.+..+..+..++.+....
T Consensus 26 ~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~ 104 (524)
T 2xut_A 26 FSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI 104 (524)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665 5678 8999998 899999999999999999999999 9999999988888887777665
Q ss_pred HHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhH---HHHHHHHHHHHHHHhhhhH
Q 043907 232 IMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI---TVAVNFVFTFLTAQTFLPM 308 (330)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~ 308 (330)
. +.+.+.......+.+.+.+. ..+....++.|.+|+++|++..+. .+....++..++|.+.+.+
T Consensus 105 ~------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 105 F------------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp T------------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred h------------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 11344444444444444443 334556677899999999876666 8888999999999999999
Q ss_pred Hhhccc-hhHHHHHHHHHH
Q 043907 309 LCHFKA-GIFFFFGGLVLI 326 (330)
Q Consensus 309 ~~~~g~-~~~~~~~~~~~~ 326 (330)
.+..+| ..|++.+++.++
T Consensus 172 ~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 172 LKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHTSCHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 888885 455555544433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.13 E-value=3.1e-10 Score=96.68 Aligned_cols=124 Identities=13% Similarity=0.017 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC--C---CCcchhHHHHHHHHHhhc
Q 043907 186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG--G---CSEGYAYLILVLVCLCSS 260 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~ 260 (330)
+..+...++.++|+++.|+++||+|||+.+..+.++..++.++.++.......... . .-.++.+..++.-.+.+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999988888776642100000000 0 001334445555555555
Q ss_pred ccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907 261 GYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC 310 (330)
Q Consensus 261 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (330)
+.+. ..+....+++|..|++.|+...++.+.....+..+++........
T Consensus 139 g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 139 GVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 5443 334566788999999999999999988887777777776665544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.99 E-value=4.2e-10 Score=93.70 Aligned_cols=150 Identities=13% Similarity=-0.003 Sum_probs=89.5
Q ss_pred HhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHH
Q 043907 158 QVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQ 236 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
...+......+.|.+++ +.|.++.+.+ ...+...++..+++++.|+++||+|||+.+..+.....+....+......
T Consensus 19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~- 96 (417)
T 2cfq_A 19 YFFIMGAYFPFFPIWLHDINHISKSDTG-IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG- 96 (417)
T ss_dssp HHHHHHHHTTTHHHHHHTTTCCCTTTSH-HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33444555667888775 4799999999 99999999999999999999999999999888776654422111110000
Q ss_pred hCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch--hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907 237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL--EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA 314 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 314 (330)
..................+....+. .....+..++ +.|+...|..+....++..++|.+.+.+.+. ++
T Consensus 97 --------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~ 166 (417)
T 2cfq_A 97 --------PLLQYNILVGSIVGGIYLGFCFNAG-APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NN 166 (417)
T ss_dssp --------HHHHTTCCHHHHGGGSSTTHHHHTT-HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-ch
Confidence 0000000111112122222222211 1122223332 4567777887777888999999999988764 43
Q ss_pred -hhHHH
Q 043907 315 -GIFFF 319 (330)
Q Consensus 315 -~~~~~ 319 (330)
..|++
T Consensus 167 ~~~f~~ 172 (417)
T 2cfq_A 167 QFVFWL 172 (417)
T ss_dssp HHHHTT
T ss_pred hHHHHH
Confidence 34443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=83.85 E-value=0.36 Score=20.35 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.4
Q ss_pred chhhhhhhhchhHH
Q 043907 3 IASSVTRAIGRKVS 16 (330)
Q Consensus 3 ~~g~l~d~~Grk~~ 16 (330)
+.|.+..|||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=36.67 E-value=14 Score=16.15 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=8.1
Q ss_pred cchhhhhhhhch
Q 043907 2 LIASSVTRAIGR 13 (330)
Q Consensus 2 ~~~g~l~d~~Gr 13 (330)
+..-+.+.||||
T Consensus 2 p~~~~~A~rYGR 13 (27)
T 2bzw_B 2 PPNLWAAQRYGR 13 (27)
T ss_dssp CGGGHHHHHHHH
T ss_pred chhHHHHHHHhH
Confidence 444567778887
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=34.15 E-value=41 Score=15.82 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=7.3
Q ss_pred HHHhhcCCCch
Q 043907 79 IGAIFLPETPN 89 (330)
Q Consensus 79 ~~~~~~pesp~ 89 (330)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34456788886
No 18
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=25.30 E-value=9.4 Score=16.90 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=6.9
Q ss_pred hhhhchhHHH
Q 043907 8 TRAIGRKVSI 17 (330)
Q Consensus 8 ~d~~Grk~~l 17 (330)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5778887654
No 19
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=20.13 E-value=27 Score=16.63 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=5.3
Q ss_pred hhhhchhH
Q 043907 8 TRAIGRKV 15 (330)
Q Consensus 8 ~d~~Grk~ 15 (330)
+||+.||+
T Consensus 30 a~rinrkk 37 (39)
T 2jpj_A 30 ASRINRKK 37 (39)
T ss_dssp HHHHHGGG
T ss_pred HHHhhhhc
Confidence 45777765
Done!