BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043908
         (462 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 35.0 bits (79), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 221 LVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLKNLKALSFRGCNGPPSSASCYLLF 280
           L +L LK C NL +LP  I  L  L  L+L GC  L  L +L  +        A+C +L 
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ------LPANCIILV 308

Query: 281 PINLM 285
           P +L 
Sbjct: 309 PPHLQ 313



 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALS 263
           +I HL  L +L L+GC  L + P        L+ L L  CS          +L  L+ L 
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 264 FRGC 267
            RGC
Sbjct: 284 LRGC 287



 Score = 33.5 bits (75), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 211 VPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKS 244
           +PL I  L+ L +L L+GC NLS LP+ I+ L +
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302



 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 211 VPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLKNLKALSFRGCNGP 270
           +P SI  L+ L +L+++ C  L+ LP  ++S  +  + E  G   L++L+ L + G    
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDA--SGEHQGLVNLQSLR-LEWTGIRSL 198

Query: 271 PSSASCYLLFPINLMLRSSDLGAL-----MLPSLSELE--DCKRLQSQP 312
           P+S +  L    +L +R+S L AL      LP L EL+   C  L++ P
Sbjct: 199 PASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246


>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
          Length = 169

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLKNLKALSFRGC 267
           LS   +SG +++  + C NL  L  + + +K L T+E     KL+NLK+L    C
Sbjct: 76  LSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIE--PLKKLENLKSLDLFNC 128


>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
 pdb|2JE0|B Chain B, Crystal Structure Of Pp32
 pdb|2JE0|C Chain C, Crystal Structure Of Pp32
 pdb|2JE0|D Chain D, Crystal Structure Of Pp32
 pdb|2JE0|E Chain E, Crystal Structure Of Pp32
 pdb|2JE0|F Chain F, Crystal Structure Of Pp32
 pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
          Length = 149

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLKNLKALSFRGC 267
           LS   +SG +++  + C NL+ L  + + +K L T+E     KL+NLK+L    C
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE--PLKKLENLKSLDLFNC 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,641,249
Number of Sequences: 62578
Number of extensions: 481037
Number of successful extensions: 1277
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 7
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)