Query 043908
Match_columns 462
No_of_seqs 401 out of 2981
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:26:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.3E-44 2.7E-49 415.3 32.5 178 24-208 269-518 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 7.9E-31 1.7E-35 289.3 16.9 257 9-269 213-630 (889)
3 PF00931 NB-ARC: NB-ARC domain 99.5 1.8E-14 4E-19 141.6 6.6 123 12-139 55-189 (287)
4 PLN03210 Resistant to P. syrin 98.6 1.4E-07 3E-12 109.8 9.5 49 379-428 956-1005(1153)
5 PLN00113 leucine-rich repeat r 98.3 7.4E-07 1.6E-11 102.3 6.4 122 210-333 179-325 (968)
6 PLN00113 leucine-rich repeat r 98.3 1.2E-06 2.6E-11 100.6 7.5 123 210-334 203-350 (968)
7 KOG0617 Ras suppressor protein 98.1 5.8E-07 1.3E-11 79.9 -0.8 116 210-334 47-190 (264)
8 PRK15386 type III secretion pr 97.9 3E-05 6.4E-10 79.1 8.2 99 220-326 73-187 (426)
9 KOG0444 Cytoskeletal regulator 97.9 4E-06 8.7E-11 87.5 1.0 118 209-336 212-382 (1255)
10 PRK15386 type III secretion pr 97.8 6E-05 1.3E-09 77.0 7.4 106 215-330 48-170 (426)
11 PRK15370 E3 ubiquitin-protein 97.7 8.8E-05 1.9E-09 82.1 8.1 103 220-334 242-363 (754)
12 PRK15387 E3 ubiquitin-protein 97.7 0.00011 2.4E-09 81.2 7.9 107 218-334 241-359 (788)
13 PRK15370 E3 ubiquitin-protein 97.6 0.00017 3.6E-09 80.0 8.4 112 210-334 213-342 (754)
14 PRK15387 E3 ubiquitin-protein 97.6 0.00015 3.1E-09 80.3 7.8 109 209-334 214-339 (788)
15 KOG0617 Ras suppressor protein 97.5 2.8E-05 6E-10 69.4 0.8 120 209-332 69-206 (264)
16 KOG0444 Cytoskeletal regulator 97.4 1.4E-05 3.1E-10 83.6 -2.8 110 214-326 73-207 (1255)
17 PLN03150 hypothetical protein; 97.4 0.00022 4.8E-09 77.9 6.3 77 221-299 420-510 (623)
18 PF13855 LRR_8: Leucine rich r 97.3 0.00042 9.1E-09 51.4 4.5 49 219-268 1-60 (61)
19 PLN03150 hypothetical protein; 97.3 0.00041 8.9E-09 75.8 6.2 59 210-268 433-501 (623)
20 KOG0472 Leucine-rich repeat pr 97.1 7.2E-05 1.6E-09 74.8 -1.0 83 209-302 196-297 (565)
21 KOG0618 Serine/threonine phosp 97.1 7.1E-05 1.5E-09 81.7 -1.3 72 258-332 384-467 (1081)
22 KOG0472 Leucine-rich repeat pr 97.1 0.00018 3.9E-09 72.1 1.3 45 208-254 264-308 (565)
23 PF14580 LRR_9: Leucine-rich r 97.0 0.00054 1.2E-08 62.4 3.3 74 217-292 17-101 (175)
24 PF12799 LRR_4: Leucine Rich r 96.9 0.0011 2.3E-08 46.0 3.5 34 219-253 1-34 (44)
25 KOG0618 Serine/threonine phosp 96.9 0.00018 3.8E-09 78.7 -0.9 97 213-327 377-487 (1081)
26 PF05729 NACHT: NACHT domain 96.8 0.0074 1.6E-07 53.4 9.4 96 23-120 54-162 (166)
27 PF14580 LRR_9: Leucine-rich r 96.5 0.0034 7.3E-08 57.2 4.3 78 213-292 35-126 (175)
28 PRK06893 DNA replication initi 96.1 0.01 2.2E-07 56.6 5.8 72 50-124 91-177 (229)
29 PF13855 LRR_8: Leucine rich r 95.8 0.012 2.7E-07 43.3 3.7 44 210-254 15-60 (61)
30 KOG1259 Nischarin, modulator o 95.7 0.0033 7.2E-08 61.0 0.6 79 211-292 299-387 (490)
31 KOG4658 Apoptotic ATPase [Sign 95.6 0.0045 9.7E-08 69.9 1.0 59 209-268 585-653 (889)
32 KOG4194 Membrane glycoprotein 95.5 0.022 4.7E-07 60.1 5.6 52 216-268 266-328 (873)
33 KOG0532 Leucine-rich repeat (L 95.5 0.0026 5.7E-08 66.5 -1.1 111 212-327 137-271 (722)
34 PF00560 LRR_1: Leucine Rich R 94.6 0.016 3.5E-07 33.6 1.0 22 220-242 1-22 (22)
35 cd00116 LRR_RI Leucine-rich re 94.6 0.015 3.3E-07 57.4 1.5 11 316-326 221-231 (319)
36 KOG4194 Membrane glycoprotein 94.6 0.045 9.9E-07 57.8 4.8 39 213-252 96-134 (873)
37 COG4886 Leucine-rich repeat (L 94.6 0.023 5E-07 58.4 2.8 59 209-268 129-197 (394)
38 KOG3665 ZYG-1-like serine/thre 94.4 0.024 5.3E-07 62.5 2.7 77 215-293 169-264 (699)
39 KOG0532 Leucine-rich repeat (L 94.2 0.0075 1.6E-07 63.2 -1.6 104 210-326 112-244 (722)
40 KOG2120 SCF ubiquitin ligase, 93.4 0.016 3.4E-07 56.4 -0.9 77 213-289 228-323 (419)
41 cd00116 LRR_RI Leucine-rich re 93.3 0.057 1.2E-06 53.3 2.8 12 316-327 250-261 (319)
42 KOG3207 Beta-tubulin folding c 92.5 0.068 1.5E-06 54.6 1.9 83 211-293 164-260 (505)
43 KOG1259 Nischarin, modulator o 92.4 0.03 6.6E-07 54.5 -0.6 77 215-292 280-365 (490)
44 PF13504 LRR_7: Leucine rich r 91.1 0.14 3E-06 27.7 1.4 17 316-333 1-17 (17)
45 KOG3665 ZYG-1-like serine/thre 90.8 0.11 2.5E-06 57.3 1.6 10 316-325 250-259 (699)
46 PF12799 LRR_4: Leucine Rich r 90.6 0.39 8.5E-06 33.0 3.6 34 258-292 2-37 (44)
47 PF13504 LRR_7: Leucine rich r 89.9 0.24 5.3E-06 26.7 1.6 17 219-236 1-17 (17)
48 KOG4237 Extracellular matrix p 89.6 0.23 5E-06 50.3 2.5 54 214-268 269-333 (498)
49 TIGR01242 26Sp45 26S proteasom 88.8 2.6 5.5E-05 43.0 9.6 87 49-137 214-323 (364)
50 TIGR03015 pepcterm_ATPase puta 88.5 13 0.00028 35.6 14.0 109 48-167 121-242 (269)
51 PF13173 AAA_14: AAA domain 88.4 0.78 1.7E-05 39.2 4.7 64 49-113 60-127 (128)
52 PF01637 Arch_ATPase: Archaeal 86.1 2.4 5.1E-05 39.4 7.0 83 36-121 104-204 (234)
53 KOG0531 Protein phosphatase 1, 85.7 0.41 9E-06 49.7 1.7 52 215-268 114-173 (414)
54 PRK04841 transcriptional regul 85.4 12 0.00027 42.7 13.7 71 49-120 120-198 (903)
55 PRK09087 hypothetical protein; 85.2 4.2 9E-05 38.6 8.2 67 52-123 89-168 (226)
56 KOG1859 Leucine-rich repeat pr 84.1 0.25 5.5E-06 53.7 -0.7 19 212-230 102-120 (1096)
57 COG4886 Leucine-rich repeat (L 84.0 0.72 1.6E-05 47.3 2.5 81 213-297 110-202 (394)
58 KOG1909 Ran GTPase-activating 83.1 0.52 1.1E-05 47.0 1.0 38 217-254 90-131 (382)
59 KOG2739 Leucine-rich acidic nu 82.9 0.68 1.5E-05 44.4 1.7 19 314-332 141-159 (260)
60 KOG1909 Ran GTPase-activating 80.8 0.3 6.5E-06 48.6 -1.5 56 213-268 207-281 (382)
61 KOG3864 Uncharacterized conser 79.4 0.51 1.1E-05 43.7 -0.5 55 214-268 120-187 (221)
62 KOG2739 Leucine-rich acidic nu 78.3 1.8 4E-05 41.5 2.9 62 253-330 61-130 (260)
63 KOG3207 Beta-tubulin folding c 78.0 0.82 1.8E-05 47.0 0.5 78 217-294 195-286 (505)
64 PRK08727 hypothetical protein; 77.8 6.8 0.00015 37.2 6.7 71 50-123 93-177 (233)
65 PRK06645 DNA polymerase III su 74.3 27 0.00058 37.4 10.7 73 49-123 127-202 (507)
66 smart00370 LRR Leucine-rich re 74.2 2.5 5.4E-05 25.1 1.7 22 218-240 1-22 (26)
67 smart00369 LRR_TYP Leucine-ric 74.2 2.5 5.4E-05 25.1 1.7 22 218-240 1-22 (26)
68 PRK05642 DNA replication initi 73.5 7.8 0.00017 36.8 5.9 68 53-123 100-181 (234)
69 KOG1859 Leucine-rich repeat pr 72.6 1.2 2.5E-05 48.8 -0.0 54 214-268 204-265 (1096)
70 KOG2120 SCF ubiquitin ligase, 71.8 1.7 3.8E-05 42.7 1.0 54 220-273 287-354 (419)
71 TIGR03420 DnaA_homol_Hda DnaA 71.7 5.4 0.00012 37.2 4.3 69 50-121 90-172 (226)
72 PRK08084 DNA replication initi 68.9 12 0.00027 35.5 6.1 70 52-123 99-182 (235)
73 PRK00411 cdc6 cell division co 67.3 58 0.0013 33.2 11.2 80 41-121 129-220 (394)
74 PRK06620 hypothetical protein; 67.3 21 0.00046 33.4 7.3 68 51-122 86-161 (214)
75 KOG1644 U2-associated snRNP A' 66.6 9.4 0.0002 35.6 4.5 31 220-252 43-73 (233)
76 PRK05564 DNA polymerase III su 63.9 24 0.00051 35.1 7.3 69 50-120 93-164 (313)
77 PF00308 Bac_DnaA: Bacterial d 63.8 30 0.00064 32.5 7.6 72 50-123 97-181 (219)
78 KOG2123 Uncharacterized conser 62.6 1.4 3.1E-05 42.9 -1.6 31 218-251 18-49 (388)
79 PRK03992 proteasome-activating 61.8 82 0.0018 32.4 11.0 86 49-136 223-331 (389)
80 PRK07471 DNA polymerase III su 60.8 29 0.00064 35.4 7.4 71 49-120 140-212 (365)
81 KOG0531 Protein phosphatase 1, 60.6 3.9 8.4E-05 42.4 1.0 78 213-292 89-175 (414)
82 KOG4579 Leucine-rich repeat (L 59.6 0.99 2.1E-05 39.5 -2.9 59 209-268 66-134 (177)
83 TIGR00678 holB DNA polymerase 58.7 21 0.00045 32.4 5.5 71 49-120 95-167 (188)
84 KOG1644 U2-associated snRNP A' 57.9 15 0.00032 34.3 4.1 55 213-268 58-124 (233)
85 TIGR02903 spore_lon_C ATP-depe 56.5 26 0.00056 38.5 6.5 73 49-122 291-367 (615)
86 smart00367 LRR_CC Leucine-rich 55.0 9.3 0.0002 22.7 1.6 15 243-257 2-16 (26)
87 KOG4237 Extracellular matrix p 54.7 0.88 1.9E-05 46.2 -4.6 38 214-252 86-124 (498)
88 PRK14961 DNA polymerase III su 54.0 56 0.0012 33.2 8.2 74 49-123 118-193 (363)
89 PF02463 SMC_N: RecF/RecN/SMC 51.9 8.8 0.00019 35.8 1.8 48 49-96 157-206 (220)
90 COG1373 Predicted ATPase (AAA+ 49.9 39 0.00085 34.9 6.3 63 50-116 94-162 (398)
91 PRK12402 replication factor C 49.2 46 0.00099 33.0 6.6 72 50-122 125-198 (337)
92 PRK14963 DNA polymerase III su 48.6 36 0.00078 36.4 6.0 74 49-123 115-190 (504)
93 PRK13342 recombination factor 47.8 29 0.00062 36.0 5.0 68 49-121 91-164 (413)
94 PRK07003 DNA polymerase III su 47.5 57 0.0012 36.7 7.3 73 49-122 118-192 (830)
95 TIGR02928 orc1/cdc6 family rep 47.1 1.6E+02 0.0035 29.5 10.3 81 41-121 120-212 (365)
96 PTZ00454 26S protease regulato 47.0 1.7E+02 0.0037 30.2 10.5 97 37-136 226-345 (398)
97 KOG2982 Uncharacterized conser 46.8 15 0.00032 36.4 2.5 55 210-267 88-156 (418)
98 TIGR02880 cbbX_cfxQ probable R 44.8 91 0.002 30.5 7.8 71 51-121 122-208 (284)
99 PRK14086 dnaA chromosomal repl 44.7 1E+02 0.0022 33.9 8.5 68 52-123 379-461 (617)
100 cd00009 AAA The AAA+ (ATPases 42.9 43 0.00094 27.7 4.6 41 49-90 83-131 (151)
101 KOG4579 Leucine-rich repeat (L 42.2 8.2 0.00018 33.9 -0.1 52 216-268 50-111 (177)
102 PRK12323 DNA polymerase III su 40.5 70 0.0015 35.4 6.6 71 49-121 123-196 (700)
103 COG0593 DnaA ATPase involved i 40.0 89 0.0019 32.4 7.0 83 53-139 178-277 (408)
104 PRK09112 DNA polymerase III su 39.3 85 0.0018 31.9 6.7 71 49-120 140-212 (351)
105 KOG1947 Leucine rich repeat pr 38.8 9.4 0.0002 39.6 -0.2 35 218-252 187-223 (482)
106 PRK13341 recombination factor 38.8 1.1E+02 0.0023 34.5 7.9 68 49-121 108-181 (725)
107 smart00364 LRR_BAC Leucine-ric 38.5 21 0.00045 21.7 1.3 17 220-237 3-19 (26)
108 PRK14087 dnaA chromosomal repl 36.8 1E+02 0.0022 32.5 7.0 71 50-122 206-289 (450)
109 TIGR02397 dnaX_nterm DNA polym 36.4 1.6E+02 0.0036 29.3 8.4 72 49-122 116-190 (355)
110 PRK07940 DNA polymerase III su 36.3 1.4E+02 0.0031 30.8 7.9 70 49-119 116-187 (394)
111 PLN03025 replication factor C 35.0 85 0.0018 31.2 5.9 74 49-123 98-173 (319)
112 PRK14959 DNA polymerase III su 34.6 2.2E+02 0.0048 31.4 9.3 73 49-123 118-193 (624)
113 PRK14949 DNA polymerase III su 33.8 1.2E+02 0.0025 35.0 7.2 71 49-121 118-191 (944)
114 PRK05707 DNA polymerase III su 32.8 1.7E+02 0.0036 29.5 7.6 71 49-120 105-177 (328)
115 COG5238 RNA1 Ran GTPase-activa 32.5 34 0.00073 33.6 2.4 40 215-254 88-131 (388)
116 TIGR00362 DnaA chromosomal rep 31.9 1.1E+02 0.0024 31.5 6.4 87 51-139 200-301 (405)
117 PF13516 LRR_6: Leucine Rich r 31.1 34 0.00074 19.6 1.4 11 219-229 2-12 (24)
118 PRK14962 DNA polymerase III su 30.8 2E+02 0.0044 30.4 8.2 88 49-138 116-208 (472)
119 PRK00080 ruvB Holliday junctio 30.1 72 0.0016 31.8 4.5 45 79-123 151-195 (328)
120 KOG2982 Uncharacterized conser 30.0 30 0.00065 34.3 1.6 27 242-268 70-108 (418)
121 PRK12422 chromosomal replicati 29.8 1.4E+02 0.003 31.5 6.7 72 50-123 202-286 (445)
122 PRK14951 DNA polymerase III su 29.7 2.4E+02 0.0051 31.1 8.6 73 49-122 123-197 (618)
123 PF13306 LRR_5: Leucine rich r 29.6 1.8E+02 0.0039 23.7 6.4 36 215-252 8-44 (129)
124 TIGR01241 FtsH_fam ATP-depende 29.4 5.4E+02 0.012 27.3 11.2 99 36-137 134-255 (495)
125 PRK07764 DNA polymerase III su 29.2 2.4E+02 0.0053 32.2 8.8 72 49-121 119-192 (824)
126 CHL00181 cbbX CbbX; Provisiona 28.9 3.4E+02 0.0073 26.6 8.9 69 52-123 124-211 (287)
127 PHA02544 44 clamp loader, smal 28.5 93 0.002 30.6 5.0 69 50-119 100-171 (316)
128 PRK14971 DNA polymerase III su 28.4 3.9E+02 0.0085 29.4 10.1 74 49-123 120-195 (614)
129 PRK06964 DNA polymerase III su 28.3 2.4E+02 0.0052 28.5 7.9 70 49-120 131-203 (342)
130 PRK14957 DNA polymerase III su 27.9 2.3E+02 0.005 30.7 8.0 72 49-121 118-191 (546)
131 PRK14960 DNA polymerase III su 27.9 1.1E+02 0.0025 33.8 5.7 72 49-122 117-191 (702)
132 PRK14970 DNA polymerase III su 27.4 2.1E+02 0.0046 28.9 7.5 74 49-123 107-182 (367)
133 PRK07994 DNA polymerase III su 27.2 1.6E+02 0.0034 32.6 6.7 71 49-121 118-191 (647)
134 PRK14964 DNA polymerase III su 27.0 2.5E+02 0.0054 30.0 8.0 74 49-123 115-190 (491)
135 TIGR00635 ruvB Holliday juncti 26.9 1.5E+02 0.0032 28.9 6.1 44 79-122 130-173 (305)
136 PF07693 KAP_NTPase: KAP famil 26.7 2.4E+02 0.0051 27.6 7.6 46 48-95 170-220 (325)
137 TIGR02881 spore_V_K stage V sp 26.4 3.4E+02 0.0074 25.9 8.4 66 52-122 107-192 (261)
138 PF13401 AAA_22: AAA domain; P 26.2 2.3E+02 0.005 23.2 6.4 68 19-88 50-125 (131)
139 PF13177 DNA_pol3_delta2: DNA 26.1 61 0.0013 28.8 2.9 60 49-109 101-162 (162)
140 PRK00149 dnaA chromosomal repl 26.1 1.3E+02 0.0029 31.5 5.8 71 51-123 212-295 (450)
141 cd00561 CobA_CobO_BtuR ATP:cor 26.0 1.4E+02 0.0029 26.7 5.0 41 49-90 94-139 (159)
142 PRK07133 DNA polymerase III su 25.5 6.3E+02 0.014 28.4 11.0 71 49-121 117-190 (725)
143 CHL00195 ycf46 Ycf46; Provisio 24.6 3.9E+02 0.0085 28.5 9.0 102 32-136 301-423 (489)
144 TIGR01243 CDC48 AAA family ATP 24.5 4E+02 0.0086 30.0 9.5 105 30-137 527-652 (733)
145 PTZ00361 26 proteosome regulat 23.6 2.1E+02 0.0046 30.0 6.7 57 78-136 321-383 (438)
146 KOG3864 Uncharacterized conser 23.0 38 0.00082 31.7 0.9 49 220-268 102-162 (221)
147 PRK14955 DNA polymerase III su 23.0 1.3E+02 0.0029 30.9 5.1 71 49-121 126-199 (397)
148 TIGR03689 pup_AAA proteasome A 22.1 2.6E+02 0.0057 30.0 7.1 71 49-121 288-378 (512)
149 COG2256 MGS1 ATPase related to 22.0 3.5E+02 0.0075 28.1 7.5 65 49-119 103-174 (436)
150 PRK07132 DNA polymerase III su 21.8 5.4E+02 0.012 25.4 8.8 71 49-120 89-161 (299)
151 CHL00176 ftsH cell division pr 21.6 6.1E+02 0.013 28.1 10.0 82 39-123 265-368 (638)
152 PRK14954 DNA polymerase III su 21.5 7.3E+02 0.016 27.4 10.5 72 49-121 126-199 (620)
153 PRK14088 dnaA chromosomal repl 21.5 1.9E+02 0.0041 30.3 5.9 68 50-122 194-277 (440)
154 PRK00440 rfc replication facto 21.2 1.6E+02 0.0036 28.6 5.2 72 51-123 103-176 (319)
155 KOG0741 AAA+-type ATPase [Post 20.4 2.4E+02 0.0053 30.5 6.1 83 37-120 586-685 (744)
156 KOG1947 Leucine rich repeat pr 20.0 55 0.0012 33.8 1.5 52 217-268 241-306 (482)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-44 Score=415.30 Aligned_cols=178 Identities=26% Similarity=0.400 Sum_probs=148.2
Q ss_pred HHHHHHHhCCC---hhHHHHHHHHHHhcCCCcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcCCCCc
Q 043908 24 PALLLVLFGTS---HRNLARIIEAAAAATGPPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVAHEVDEE 100 (462)
Q Consensus 24 ~~~l~~~~~~~---~~~l~~i~~~~~~~~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~~~~~ 100 (462)
++++.+.++.. ..++..+. +.+. +||+||||||||+..+ |+.+++...|+++|||||||||+++|+..++++.
T Consensus 269 ~~~l~~il~~~~~~~~~~~~~~-~~L~-~krvLLVLDdv~~~~~-l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~- 344 (1153)
T PLN03210 269 RAFLSEILDKKDIKIYHLGAME-ERLK-HRKVLIFIDDLDDQDV-LDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH- 344 (1153)
T ss_pred HHHHHHHhCCCCcccCCHHHHH-HHHh-CCeEEEEEeCCCCHHH-HHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe-
Confidence 44455554432 22333343 3444 7999999999999998 9999999999999999999999999999998887
Q ss_pred ceEecCCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHh-----------------------------------------
Q 043908 101 HILDLDVLNNDEALQFFSVKAFKSHRPVGDYVELSERVL----------------------------------------- 139 (462)
Q Consensus 101 ~~y~v~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~Iv----------------------------------------- 139 (462)
+|+|+.|+++|||+||+++||++..+++++++++++|+
T Consensus 345 -~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~ 423 (1153)
T PLN03210 345 -IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIE 423 (1153)
T ss_pred -EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHH
Confidence 99999999999999999999998878888999999988
Q ss_pred ----------------------------cChhHHHHHHHhCCCCCcccHHHHhccCceeEeCCCeEeecHHHHHHHHHHh
Q 043908 140 ----------------------------KDRDYVAKILEGCGFSPVIGIEVLIEKSRLTVDGRNKLQMHDLLQELGQLIV 191 (462)
Q Consensus 140 ----------------------------~~~~~l~~il~~~g~~~~~~i~~L~~~sLi~~~~~~~~~MHdLl~~~~~~i~ 191 (462)
.+.+++..++..+|+.+..+++.|+++||++++ .++++|||++|+||++++
T Consensus 424 ~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~ 502 (1153)
T PLN03210 424 KTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIV 502 (1153)
T ss_pred HHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHH
Confidence 334555566666777778889999999999998 689999999999999999
Q ss_pred ccCCCCCCCcccccccc
Q 043908 192 TRQFPEEPGKRSRIWRE 208 (462)
Q Consensus 192 ~~e~~~~~~~~~rL~~~ 208 (462)
++++ .+|++++|+|..
T Consensus 503 ~~~~-~~~~~r~~l~~~ 518 (1153)
T PLN03210 503 RAQS-NEPGEREFLVDA 518 (1153)
T ss_pred Hhhc-CCCCcceeEeCH
Confidence 8886 578888887764
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-31 Score=289.34 Aligned_cols=257 Identities=23% Similarity=0.270 Sum_probs=203.7
Q ss_pred CceEEEeccccHhHHHHHHHHHhCCC--------hhHHHHHHHHHHhcCCCcEEEEeCCCCcchhHHHhhcCCCCCCCCe
Q 043908 9 STSVIVIDEIDEKALPALLLVLFGTS--------HRNLARIIEAAAAATGPPFMVEDRSDRILTLFTTLKVAPIMAAAAA 80 (462)
Q Consensus 9 ~~~v~v~~~fd~~~l~~~l~~~~~~~--------~~~l~~i~~~~~~~~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GS 80 (462)
+.=|+||++|+.+.+++.+.+.++.. ..+++..+.+.+. +|||+|||||||++.+ |+.+..+++....||
T Consensus 213 ~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~d-w~~I~~~~p~~~~g~ 290 (889)
T KOG4658|consen 213 VIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVD-WDKIGVPFPSRENGS 290 (889)
T ss_pred EEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEeccccccc-HHhcCCCCCCccCCe
Confidence 34588999999887777777766541 1244555556665 8999999999999999 999999999998999
Q ss_pred EEEEEeCChhHHHH-cCCCCcceEecCCCCHHHHHHHHHHhhhCCCC-CCccHHHHHHHHh-------------------
Q 043908 81 GILITTRDRQLLVA-HEVDEEHILDLDVLNNDEALQFFSVKAFKSHR-PVGDYVELSERVL------------------- 139 (462)
Q Consensus 81 rIIvTTR~~~V~~~-~~~~~~~~y~v~~L~~~es~~LF~~~af~~~~-~~~~~~~l~~~Iv------------------- 139 (462)
||++|||++.||.. |++.. .++++.|+++|||.||+++||.... ..++++++|++|+
T Consensus 291 KvvlTTRs~~V~~~~m~~~~--~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~ 368 (889)
T KOG4658|consen 291 KVVLTTRSEEVCGRAMGVDY--PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLAC 368 (889)
T ss_pred EEEEEeccHhhhhccccCCc--cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcC
Confidence 99999999999999 88877 9999999999999999999998643 4456899999999
Q ss_pred -----------------------------------------------------------cChhHHHHHHHhCCCCCc---
Q 043908 140 -----------------------------------------------------------KDRDYVAKILEGCGFSPV--- 157 (462)
Q Consensus 140 -----------------------------------------------------------~~~~~l~~il~~~g~~~~--- 157 (462)
++++.++..|+|+||+..
T Consensus 369 K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 369 KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 788889999999998743
Q ss_pred ------cc---HHHHhccCceeEeCC----CeEeecHHHHHHHHHHhc-----cCC--------------CCCCCccccc
Q 043908 158 ------IG---IEVLIEKSRLTVDGR----NKLQMHDLLQELGQLIVT-----RQF--------------PEEPGKRSRI 205 (462)
Q Consensus 158 ------~~---i~~L~~~sLi~~~~~----~~~~MHdLl~~~~~~i~~-----~e~--------------~~~~~~~~rL 205 (462)
.| +.+|+.++|+....+ .+++|||++|+||..++. ++. .......+|+
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE
Confidence 12 889999999888742 569999999999999998 331 0011111222
Q ss_pred cccC----------------------------CCC-CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--
Q 043908 206 WREE----------------------------EVP-LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-- 254 (462)
Q Consensus 206 ~~~~----------------------------~iP-~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-- 254 (462)
.... .++ ..+..++.|++|||++|..++.||++|++|-+||+|+++++.
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 1110 001 126779999999999999999999999999999999998854
Q ss_pred -------CCCCccEEEeecCCC
Q 043908 255 -------KLKNLKALSFRGCNG 269 (462)
Q Consensus 255 -------~L~~L~~L~l~~~~~ 269 (462)
+|+.|.+|++..+..
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred ccchHHHHHHhhheeccccccc
Confidence 455888888887763
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.51 E-value=1.8e-14 Score=141.59 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=78.2
Q ss_pred EEEeccccHh-HHHHHHHHHhCCC---------hhHHHHHHHHHHhcCCCcEEEEeCCCCcchhHHHhhcCCCCCCCCeE
Q 043908 12 VIVIDEIDEK-ALPALLLVLFGTS---------HRNLARIIEAAAAATGPPFMVEDRSDRILTLFTTLKVAPIMAAAAAG 81 (462)
Q Consensus 12 v~v~~~fd~~-~l~~~l~~~~~~~---------~~~l~~i~~~~~~~~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSr 81 (462)
|.++...+.. .+++ +.+.++.. .......+.+.+. ++|+||||||||+..+ |+.+...++.+..|||
T Consensus 55 v~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~-~~~l~~~~~~~~~~~k 131 (287)
T PF00931_consen 55 VSLSKNPSLEQLLEQ-ILRQLGEPDSSISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEED-LEELREPLPSFSSGSK 131 (287)
T ss_dssp EEEES-SCCHHHHHH-HHHHHTCC-STSSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHH-H-------HCHHSS-E
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccchhhhc-cccceeeeeeeccccc-cccccccccccccccc
Confidence 3445555544 4455 44444433 2334445555554 7899999999999998 9999888777888999
Q ss_pred EEEEeCChhHHHHcCC-CCcceEecCCCCHHHHHHHHHHhhhCCC-CCCccHHHHHHHHh
Q 043908 82 ILITTRDRQLLVAHEV-DEEHILDLDVLNNDEALQFFSVKAFKSH-RPVGDYVELSERVL 139 (462)
Q Consensus 82 IIvTTR~~~V~~~~~~-~~~~~y~v~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~Iv 139 (462)
||||||+++|+..++. .. .|+|++|+.+||++||.+.|+... ...+...+++++|+
T Consensus 132 ilvTTR~~~v~~~~~~~~~--~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~ 189 (287)
T PF00931_consen 132 ILVTTRDRSVAGSLGGTDK--VIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIV 189 (287)
T ss_dssp EEEEESCGGGGTTHHSCEE--EEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHH
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987765 44 999999999999999999998755 23334445555555
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.58 E-value=1.4e-07 Score=109.83 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=44.6
Q ss_pred eEEEecCCCCCCCcccccCCcEEE-EEcCCCCCCCCceeEEEEEEEEecCC
Q 043908 379 LSIVVPGSEIPKWFTYQNEGSSIT-VTRPSYLYNMNKVVGYAVCYVFHVPK 428 (462)
Q Consensus 379 ~~~~~Pg~~iP~wf~~~~~g~sit-i~lp~~~~~~~~~~gfa~c~v~~~~~ 428 (462)
..+++||+++|+||.||+.|+++| |.+|+.|. ...|.||++|+|+.+..
T Consensus 956 ~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~ 1005 (1153)
T PLN03210 956 KQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSES 1005 (1153)
T ss_pred eEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCc
Confidence 457899999999999999999999 99999998 78899999999998743
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.30 E-value=7.4e-07 Score=102.27 Aligned_cols=122 Identities=25% Similarity=0.297 Sum_probs=69.3
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~~ 277 (462)
.+|.+++++++|++|+|++|...+.+|..++++++|++|+++++. ++++|++|++++|. +..|.. ..
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-Hh
Confidence 446666666666666666665555666666666666666666543 33466666666665 222222 23
Q ss_pred ccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCCC---CCCccEEEeeCCCCCeeec
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQL---PPNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~l---~~sL~~L~~~~C~sL~~lp 333 (462)
.++.+. |+|++|.+.+ .+| ++. ++++|.....+|.. .++|++|++.+|.-...+|
T Consensus 258 ~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred CCCCCCEEECcCCeeec-cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 334433 7777777665 555 443 45555544455532 2677778777765444443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.29 E-value=1.2e-06 Score=100.57 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~~ 277 (462)
.+|..++++++|++|++++|...+.+|..++++++|++|++++|. ++++|++|++++|. +..|.. ..
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~ 281 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IF 281 (968)
T ss_pred cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hh
Confidence 467888888888888888877777888888888888888888764 34578888888876 233322 33
Q ss_pred ccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCCC---CCCccEEEeeCCCCCeeecc
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQL---PPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~l---~~sL~~L~~~~C~sL~~lp~ 334 (462)
.++.+. |+|++|++.+ .+| .+. ++.+|.....+|.. .++|+.|++++|.-...+|.
T Consensus 282 ~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 282 SLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred hccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 444444 8888888876 566 333 45555544455532 26788888888765555554
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.07 E-value=5.8e-07 Score=79.91 Aligned_cols=116 Identities=29% Similarity=0.406 Sum_probs=83.9
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeec---------CCCCCCCccEEEeecCCCCCCCCcccccC
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELS---------GCSKLKNLKALSFRGCNGPPSSASCYLLF 280 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~---------~c~~L~~L~~L~l~~~~~~~~~~~~~~lp 280 (462)
.+|+.|..|.+|+.|++.+ +.+++||.+|+.|++|+.|+++ |...++.|+.|++..|+-. -..+|
T Consensus 47 ~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~-----e~~lp 120 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN-----ENSLP 120 (264)
T ss_pred ecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc-----cccCC
Confidence 5689999999999999997 5889999999999999999884 4556678899999887711 12344
Q ss_pred cee--------eeccCCCCCcccCC-CccccccC-------cCCCccC-CCC--CCccEEEeeCCCCCeeecc
Q 043908 281 PIN--------LMLRSSDLGALMLP-SLSELEDC-------KRLQSQP-QLP--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 281 ~~~--------L~Ls~n~l~~L~lP-~l~~l~~c-------~~L~~lp-~l~--~sL~~L~~~~C~sL~~lp~ 334 (462)
.-. |.|++|+|+ -+| .++.+.+. ..|-++| ++. ..|++|++.+. .|+.+|.
T Consensus 121 gnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred cchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 433 899999999 788 66622221 2344556 233 78888998874 4777765
No 8
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3e-05 Score=79.15 Aligned_cols=99 Identities=23% Similarity=0.486 Sum_probs=50.1
Q ss_pred CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCCC----CccEEEeecCCCCCCCCcccccCcee--eeccCCC---
Q 043908 220 GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLK----NLKALSFRGCNGPPSSASCYLLFPIN--LMLRSSD--- 290 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L~----~L~~L~l~~~~~~~~~~~~~~lp~~~--L~Ls~n~--- 290 (462)
+|+.|.+++|..+..+|..+ .++|++|++++|.+++ +|+.|++.++... .+..+|+.+ |.+.+++
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~----~L~~LPssLk~L~I~~~n~~~ 146 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIKGSATD----SIKNVPNGLTSLSINSYNPEN 146 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEEeCCCCCc----ccccCcchHhheecccccccc
Confidence 35566666666655555543 2356666666654443 4555555433210 023455444 4443211
Q ss_pred ---CCcccCC-Ccc--ccccCcCCCccC-CCCCCccEEEeeCC
Q 043908 291 ---LGALMLP-SLS--ELEDCKRLQSQP-QLPPNVTEVRVNGC 326 (462)
Q Consensus 291 ---l~~L~lP-~l~--~l~~c~~L~~lp-~l~~sL~~L~~~~C 326 (462)
+.. .+| +|+ .+.+|..+. +| .+|.+|+.|+++.+
T Consensus 147 ~~~lp~-~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 147 QARIDN-LISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred cccccc-ccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 111 355 555 566666553 34 47777777777653
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.87 E-value=4e-06 Score=87.55 Aligned_cols=118 Identities=27% Similarity=0.418 Sum_probs=84.1
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--CC-------CCccEEEeecCCCCCCCCccccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--KL-------KNLKALSFRGCNGPPSSASCYLL 279 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--~L-------~~L~~L~l~~~~~~~~~~~~~~l 279 (462)
..+|.++..|.+|+-++|+. +++..+|+.+.++.+|+.|+||+.. .| .+|+.|+++.|. +..+
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-------Lt~L 283 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-------LTVL 283 (1255)
T ss_pred hcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-------hccc
Confidence 57899999999999999995 6999999999999999999999954 11 188889998887 2333
Q ss_pred Ccee--------eeccC-------------------------CCCCcccCC-Ccc-------ccccCcCCCccCC---CC
Q 043908 280 FPIN--------LMLRS-------------------------SDLGALMLP-SLS-------ELEDCKRLQSQPQ---LP 315 (462)
Q Consensus 280 p~~~--------L~Ls~-------------------------n~l~~L~lP-~l~-------~l~~c~~L~~lp~---l~ 315 (462)
|... |.+.+ |.++ -+| +|. ---+|..|..+|+ +.
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLL 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhc
Confidence 3322 33333 4444 344 333 1113455667774 33
Q ss_pred CCccEEEeeCCCCCeeecccc
Q 043908 316 PNVTEVRVNGCASLVTLLGAL 336 (462)
Q Consensus 316 ~sL~~L~~~~C~sL~~lp~~~ 336 (462)
+-|+.||++..++|.-=|.+.
T Consensus 362 ~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred CCcceeeccCCcCccCCCCcc
Confidence 889999999999997665543
No 10
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=6e-05 Score=76.97 Aligned_cols=106 Identities=22% Similarity=0.434 Sum_probs=77.6
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCCC--------CccEEEeecCCCCCCCCcccccCcee--e
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLK--------NLKALSFRGCNGPPSSASCYLLFPIN--L 284 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L~--------~L~~L~l~~~~~~~~~~~~~~lp~~~--L 284 (462)
+..+.+++.|++++| .+..||. -..+|++|.+++|.+|+ +|++|++++|..+ ..+|+.+ |
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L------~sLP~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI------SGLPESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccc------cccccccceE
Confidence 455788999999998 8999992 23479999999999865 8999999999633 4566655 7
Q ss_pred eccCCCCCcc-cCC-Cccccc--cCc--CCCccC-CCCCCccEEEeeCCCCCe
Q 043908 285 MLRSSDLGAL-MLP-SLSELE--DCK--RLQSQP-QLPPNVTEVRVNGCASLV 330 (462)
Q Consensus 285 ~Ls~n~l~~L-~lP-~l~~l~--~c~--~L~~lp-~l~~sL~~L~~~~C~sL~ 330 (462)
+++++.+..+ .+| +|..|. ++. ....+| .+|++|++|++.+|..+.
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 8877654322 788 887333 222 223445 488999999999998653
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.70 E-value=8.8e-05 Score=82.13 Aligned_cols=103 Identities=25% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCCC--------CccEEEeecCC-CCCCCCcccccCcee--eeccC
Q 043908 220 GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLK--------NLKALSFRGCN-GPPSSASCYLLFPIN--LMLRS 288 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L~--------~L~~L~l~~~~-~~~~~~~~~~lp~~~--L~Ls~ 288 (462)
+|+.|+|++| .+..+|..+. ++|++|+++++ ++. +|+.|++++|. ...| ..+|+.. |+|++
T Consensus 242 ~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP----~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLP----AHLPSGITHLNVQS 313 (754)
T ss_pred cccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCc----ccchhhHHHHHhcC
Confidence 4555555543 3445554432 34555555532 111 45555555554 1111 0112111 55555
Q ss_pred CCCCcccCC-----Ccc--ccccCcCCCccC-CCCCCccEEEeeCCCCCeeecc
Q 043908 289 SDLGALMLP-----SLS--ELEDCKRLQSQP-QLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 289 n~l~~L~lP-----~l~--~l~~c~~L~~lp-~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
|+++ .+| +++ .+++| .+..+| .+|++|+.|++++| .|..+|.
T Consensus 314 N~Lt--~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~ 363 (754)
T PRK15370 314 NSLT--ALPETLPPGLKTLEAGEN-ALTSLPASLPPELQVLDVSKN-QITVLPE 363 (754)
T ss_pred Cccc--cCCccccccceeccccCC-ccccCChhhcCcccEEECCCC-CCCcCCh
Confidence 5555 233 222 34443 244555 34566666666665 3455543
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.65 E-value=0.00011 Score=81.25 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=65.7
Q ss_pred cCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--C----CCCccEEEeecCC-CCCCCCcccccCcee-eeccCC
Q 043908 218 LSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--K----LKNLKALSFRGCN-GPPSSASCYLLFPIN-LMLRSS 289 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--~----L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~n 289 (462)
+++|++|++++| .+..+|.. .++|+.|+++++. . .++|+.|++++|. ...|. .+|.+. |+|++|
T Consensus 241 p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N 312 (788)
T PRK15387 241 PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDN 312 (788)
T ss_pred CCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc----cccccceeECCCC
Confidence 467888888874 77778753 3577778777753 1 1267778887776 11111 112233 888888
Q ss_pred CCCcc-cCC-Ccc--ccccCcCCCccCCCCCCccEEEeeCCCCCeeecc
Q 043908 290 DLGAL-MLP-SLS--ELEDCKRLQSQPQLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 290 ~l~~L-~lP-~l~--~l~~c~~L~~lp~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
+|+++ .+| +++ .+.+| .+..+|.+|++|++|+++++ +|+.+|.
T Consensus 313 ~L~~Lp~lp~~L~~L~Ls~N-~L~~LP~lp~~Lq~LdLS~N-~Ls~LP~ 359 (788)
T PRK15387 313 QLASLPALPSELCKLWAYNN-QLTSLPTLPSGLQELSVSDN-QLASLPT 359 (788)
T ss_pred ccccCCCCcccccccccccC-ccccccccccccceEecCCC-ccCCCCC
Confidence 88843 233 343 44443 46677777778888888764 5666654
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.60 E-value=0.00017 Score=79.96 Aligned_cols=112 Identities=21% Similarity=0.370 Sum_probs=73.1
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCC--C-----CCccEEEeecCC-CCCCCCcccccCc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSK--L-----KNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~--L-----~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
.+|..+. .+|++|++++| .+..+|.++. .+|+.|+|++|.- + .+|+.|++++|. ..+|. .+|.
T Consensus 213 sLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~----~l~~ 283 (754)
T PRK15370 213 SLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPE----NLPE 283 (754)
T ss_pred cCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCCccCcccc----ccCC
Confidence 4455443 47888888875 5677887653 4788888887642 1 168888888776 22221 1232
Q ss_pred -ee-eeccCCCCCcccCC-C----cc--ccccCcCCCccC-CCCCCccEEEeeCCCCCeeecc
Q 043908 282 -IN-LMLRSSDLGALMLP-S----LS--ELEDCKRLQSQP-QLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 282 -~~-L~Ls~n~l~~L~lP-~----l~--~l~~c~~L~~lp-~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
+. |+|++|+|+ .+| . +. ++++| .+..+| .+|++|+.|++++| +|+.+|.
T Consensus 284 sL~~L~Ls~N~Lt--~LP~~lp~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~ 342 (754)
T PRK15370 284 ELRYLSVYDNSIR--TLPAHLPSGITHLNVQSN-SLTALPETLPPGLKTLEAGEN-ALTSLPA 342 (754)
T ss_pred CCcEEECCCCccc--cCcccchhhHHHHHhcCC-ccccCCccccccceeccccCC-ccccCCh
Confidence 22 899999888 455 3 33 55553 566777 46789999999887 4676764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.59 E-value=0.00015 Score=80.30 Aligned_cols=109 Identities=29% Similarity=0.355 Sum_probs=80.3
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--C----CCCccEEEeecCCCCCCCCcccccCc-
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--K----LKNLKALSFRGCNGPPSSASCYLLFP- 281 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--~----L~~L~~L~l~~~~~~~~~~~~~~lp~- 281 (462)
..+|+.+. .+|+.|++.+ +.+..||.. +++|++|+++++. . ..+|+.|++.+|. +..+|.
T Consensus 214 tsLP~~l~--~~L~~L~L~~-N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~-------L~~Lp~l 280 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPD-NNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP-------LTHLPAL 280 (788)
T ss_pred CcCCcchh--cCCCEEEccC-CcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCc-------hhhhhhc
Confidence 35677765 4899999998 478889963 5889999999862 1 2378999999887 233332
Q ss_pred --ee--eeccCCCCCcccCC----Ccc--ccccCcCCCccCCCCCCccEEEeeCCCCCeeecc
Q 043908 282 --IN--LMLRSSDLGALMLP----SLS--ELEDCKRLQSQPQLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 282 --~~--L~Ls~n~l~~L~lP----~l~--~l~~c~~L~~lp~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
.+ |+|++|+++ .+| +++ +++++ ++..+|.+|++|+.|++++| .|+.+|.
T Consensus 281 p~~L~~L~Ls~N~Lt--~LP~~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N-~L~~LP~ 339 (788)
T PRK15387 281 PSGLCKLWIFGNQLT--SLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNN-QLTSLPT 339 (788)
T ss_pred hhhcCEEECcCCccc--cccccccccceeECCCC-ccccCCCCcccccccccccC-ccccccc
Confidence 22 899999999 555 444 67765 67889988999999999886 4666664
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.52 E-value=2.8e-05 Score=69.42 Aligned_cols=120 Identities=28% Similarity=0.397 Sum_probs=84.1
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCC----C-------CCccEEEeecCC-CCCCCCcc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSK----L-------KNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~----L-------~~L~~L~l~~~~-~~~~~~~~ 276 (462)
+++|.+|+.|++|+.|++.- +.+..+|.++|.++-|+.|++.+..- | +.|+-|++.+|. ...|.. .
T Consensus 69 e~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-v 146 (264)
T KOG0617|consen 69 EELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-V 146 (264)
T ss_pred hhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-h
Confidence 68899999999999999997 58899999999999999999987431 1 267888888887 333333 4
Q ss_pred cccCcee-eeccCCCCCcccCC-CccccccCcCCC----ccCCCCCCccEEEeeCCCCCeee
Q 043908 277 YLLFPIN-LMLRSSDLGALMLP-SLSELEDCKRLQ----SQPQLPPNVTEVRVNGCASLVTL 332 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~L~lP-~l~~l~~c~~L~----~lp~l~~sL~~L~~~~C~sL~~l 332 (462)
+.+..+. |.+++|++- ++| .++.+...+.|- .+.-+||-|-.|++-+-.+...+
T Consensus 147 g~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~ 206 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRM 206 (264)
T ss_pred hhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhh
Confidence 4555555 888889888 889 777333322221 12235566666666665444333
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.41 E-value=1.4e-05 Score=83.57 Aligned_cols=110 Identities=26% Similarity=0.329 Sum_probs=62.4
Q ss_pred chhccCCCcEEEecCCCCC--CccCccCCCCCCcCEEeecCCC------CC---CCccEEEeecCC-CCCCCCcccccCc
Q 043908 214 SIEHLSGLVQLTLKGCKNL--SSLPATISSLKSLRTLELSGCS------KL---KNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l--~~LP~~i~~L~~L~~L~l~~c~------~L---~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
.+..|+.||.+.+..| ++ .-+|..|.+|..|.+|+||... +| +++-+|+|++|+ ..+|.+....+..
T Consensus 73 ELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 3445556666666653 22 2467777778888888877632 11 267778888777 3333332222222
Q ss_pred ee-eeccCCCCCcccCC-Ccc--------ccccCcC-CCccCCCC--CCccEEEeeCC
Q 043908 282 IN-LMLRSSDLGALMLP-SLS--------ELEDCKR-LQSQPQLP--PNVTEVRVNGC 326 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~-L~~lp~l~--~sL~~L~~~~C 326 (462)
+. ||||+|.++ .+| .++ .|++.+- .-.+.++| ++|+.|++++-
T Consensus 152 LLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred Hhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 22 888888888 677 655 3333321 11122344 67788877763
No 17
>PLN03150 hypothetical protein; Provisional
Probab=97.41 E-value=0.00022 Score=77.90 Aligned_cols=77 Identities=26% Similarity=0.360 Sum_probs=53.8
Q ss_pred CcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCcccccCcee-eecc
Q 043908 221 LVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASCYLLFPIN-LMLR 287 (462)
Q Consensus 221 L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~~~lp~~~-L~Ls 287 (462)
++.|+|++|...+.+|..+++|++|+.|+|+++. .+++|+.|+|++|. +.+|.. +..++++. |+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 6677888776667788888888888888887643 34477788887776 344433 44555555 8888
Q ss_pred CCCCCcccCC-Cc
Q 043908 288 SSDLGALMLP-SL 299 (462)
Q Consensus 288 ~n~l~~L~lP-~l 299 (462)
+|++++ .+| .+
T Consensus 499 ~N~l~g-~iP~~l 510 (623)
T PLN03150 499 GNSLSG-RVPAAL 510 (623)
T ss_pred CCcccc-cCChHH
Confidence 888887 777 54
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.27 E-value=0.00042 Score=51.38 Aligned_cols=49 Identities=35% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 219 SGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 219 ~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
++|++|++++| .+..+|. .+..+++|++|+++++. .+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35677777765 6666764 44567777777776542 33355555555543
No 19
>PLN03150 hypothetical protein; Provisional
Probab=97.26 E-value=0.00041 Score=75.83 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=53.1
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
.+|..+++|++|+.|+|++|...+.+|..++.+++|+.|+|+++. ++++|++|+|++|.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 568899999999999999987778999999999999999999864 45599999999997
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.14 E-value=7.2e-05 Score=74.80 Aligned_cols=83 Identities=27% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecC----------CCCCCCccEEEeecCCCCCCCCcccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSG----------CSKLKNLKALSFRGCNGPPSSASCYL 278 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~----------c~~L~~L~~L~l~~~~~~~~~~~~~~ 278 (462)
+.+|+.+|.|.+|..|+|.. +.+..+| +|+..+.|..|.++. |+.|.+|..|++++|. +..
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-------lke 266 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-------LKE 266 (565)
T ss_pred hcCChhhcchhhhHHHHhhh-cccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-------ccc
Confidence 46788888888888888887 4778888 677888888887764 5577789999999998 445
Q ss_pred cCcee--------eeccCCCCCcccCC-Ccccc
Q 043908 279 LFPIN--------LMLRSSDLGALMLP-SLSEL 302 (462)
Q Consensus 279 lp~~~--------L~Ls~n~l~~L~lP-~l~~l 302 (462)
+|... ||+|+|.++ .+| +++++
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is--~Lp~sLgnl 297 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDIS--SLPYSLGNL 297 (565)
T ss_pred CchHHHHhhhhhhhcccCCccc--cCCcccccc
Confidence 55432 999999999 788 88744
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.14 E-value=7.1e-05 Score=81.72 Aligned_cols=72 Identities=24% Similarity=0.388 Sum_probs=41.0
Q ss_pred CccEEEeecCC-CCCCCCcccccCcee-eeccCCCCCcccCC-Ccc------cc-ccCcCCCccCCCC--CCccEEEeeC
Q 043908 258 NLKALSFRGCN-GPPSSASCYLLFPIN-LMLRSSDLGALMLP-SLS------EL-EDCKRLQSQPQLP--PNVTEVRVNG 325 (462)
Q Consensus 258 ~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~n~l~~L~lP-~l~------~l-~~c~~L~~lp~l~--~sL~~L~~~~ 325 (462)
+|+.|+|++|. +..|.+....++.+. |+||||.++ .|| ++. .| .+-..+..+|++. +.|+.+|++
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS- 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS- 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-
Confidence 78888888887 333333333333333 888888888 667 433 22 2223455666544 666666664
Q ss_pred CCCCeee
Q 043908 326 CASLVTL 332 (462)
Q Consensus 326 C~sL~~l 332 (462)
|..|..+
T Consensus 461 ~N~L~~~ 467 (1081)
T KOG0618|consen 461 CNNLSEV 467 (1081)
T ss_pred cchhhhh
Confidence 4444433
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.11 E-value=0.00018 Score=72.07 Aligned_cols=45 Identities=38% Similarity=0.530 Sum_probs=39.5
Q ss_pred cCCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC
Q 043908 208 EEEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS 254 (462)
Q Consensus 208 ~~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~ 254 (462)
.+++|+.+..|++|.+||+++ +.+..+|.++|+| +|+.|.+.|.+
T Consensus 264 lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 357899999999999999997 5889999999999 99999998844
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.00 E-value=0.00054 Score=62.37 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=18.3
Q ss_pred ccCCCcEEEecCCCCCCccCccCC-CCCCcCEEeecCCC--------CCCCccEEEeecCC-CCCCCCcccccCcee-ee
Q 043908 217 HLSGLVQLTLKGCKNLSSLPATIS-SLKSLRTLELSGCS--------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LM 285 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~LP~~i~-~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~ 285 (462)
+..+++.|+|.+| .+..+. .++ .+.+|+.|+++++. .+++|+.|++++|. ..+.......+|.+. |+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3345667777763 555553 454 46667777776543 34477777777777 221111012366666 88
Q ss_pred ccCCCCC
Q 043908 286 LRSSDLG 292 (462)
Q Consensus 286 Ls~n~l~ 292 (462)
|++|+|.
T Consensus 95 L~~N~I~ 101 (175)
T PF14580_consen 95 LSNNKIS 101 (175)
T ss_dssp -TTS---
T ss_pred CcCCcCC
Confidence 8888887
No 24
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.92 E-value=0.0011 Score=45.97 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=28.7
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCcCEEeecCC
Q 043908 219 SGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGC 253 (462)
Q Consensus 219 ~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c 253 (462)
++|++|++++| .+..+|..+++|++|++|+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 47999999985 88899998999999999999886
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00018 Score=78.72 Aligned_cols=97 Identities=27% Similarity=0.365 Sum_probs=68.2
Q ss_pred CchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCcccccCc
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
+-+-++++|+.|+|++ +.+.++|.+ +.++..|+.|+|||.. ++..|++|..++|. ...| ....+|.
T Consensus 377 p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~q 453 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQ 453 (1081)
T ss_pred hhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCc
Confidence 4567888999999998 588999975 4588999999999943 22377788887777 1112 1233444
Q ss_pred ee-eeccCCCCCcccCCCccccccCcCCCccC-CCC-CCccEEEeeCCC
Q 043908 282 IN-LMLRSSDLGALMLPSLSELEDCKRLQSQP-QLP-PNVTEVRVNGCA 327 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP~l~~l~~c~~L~~lp-~l~-~sL~~L~~~~C~ 327 (462)
+. +|+|.|+++. ..+| .+| ++|++||+++.+
T Consensus 454 L~~lDlS~N~L~~---------------~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSE---------------VTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhh---------------hhhhhhCCCcccceeeccCCc
Confidence 44 8888887773 2334 355 889999988865
No 26
>PF05729 NACHT: NACHT domain
Probab=96.85 E-value=0.0074 Score=53.43 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCcEEEEeCCCCcchh--------HHH-hhcCCC-CCCCCeEEEEEeCChhH-
Q 043908 23 LPALLLVLFGTSHRNLARIIEAAAAATGPPFMVEDRSDRILTL--------FTT-LKVAPI-MAAAAAGILITTRDRQL- 91 (462)
Q Consensus 23 l~~~l~~~~~~~~~~l~~i~~~~~~~~Kr~LLVLDDVw~~~~~--------~e~-L~~~~~-~~~~GSrIIvTTR~~~V- 91 (462)
+.+.|......................+++++|||++++.... +.. +..-.. ...++.+||||+|....
T Consensus 54 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 54 LADLLFDQLPESIAPIEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 3444444444343444443444444589999999999765420 111 211111 13568999999998876
Q ss_pred --HHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 92 --LVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 92 --~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
........ .+++++|++++..+++.++
T Consensus 134 ~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 134 DLRRRLKQAQ--ILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred HHHHhcCCCc--EEEECCCCHHHHHHHHHHH
Confidence 33344444 8999999999999998754
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.46 E-value=0.0034 Score=57.19 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=30.9
Q ss_pred Cchh-ccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCccccc
Q 043908 213 LSIE-HLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASCYLL 279 (462)
Q Consensus 213 ~si~-~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~~~l 279 (462)
+.++ .+.+|+.|+|++| .+..++ ++..|+.|++|++++.. .+++|+.|++++|. .......+..+
T Consensus 35 e~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL 112 (175)
T ss_dssp -S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred cchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence 3555 5789999999985 888886 58889999999998743 35699999999988 11111123344
Q ss_pred Ccee-eeccCCCCC
Q 043908 280 FPIN-LMLRSSDLG 292 (462)
Q Consensus 280 p~~~-L~Ls~n~l~ 292 (462)
|.+. |+|.+|-++
T Consensus 113 ~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 113 PKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TT-GGG
T ss_pred CCcceeeccCCccc
Confidence 5444 666655544
No 28
>PRK06893 DNA replication initiation factor; Validated
Probab=96.11 E-value=0.01 Score=56.56 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred CCcEEEEeCCCCc---chhHHH-hhcCCCC-CCCCeEEEEEeCC----------hhHHHHcCCCCcceEecCCCCHHHHH
Q 043908 50 GPPFMVEDRSDRI---LTLFTT-LKVAPIM-AAAAAGILITTRD----------RQLLVAHEVDEEHILDLDVLNNDEAL 114 (462)
Q Consensus 50 Kr~LLVLDDVw~~---~~~~e~-L~~~~~~-~~~GSrIIvTTR~----------~~V~~~~~~~~~~~y~v~~L~~~es~ 114 (462)
+.-+|||||+|.. .+ |+. +...+.. ...|+.|||||.+ +++...++... +++++++++++.+
T Consensus 91 ~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~--~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE--IYQLNDLTDEQKI 167 (229)
T ss_pred cCCEEEEeChhhhcCChH-HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC--eeeCCCCCHHHHH
Confidence 3459999999973 23 542 2111111 1346666555544 47788777666 9999999999999
Q ss_pred HHHHHhhhCC
Q 043908 115 QFFSVKAFKS 124 (462)
Q Consensus 115 ~LF~~~af~~ 124 (462)
+++.++++..
T Consensus 168 ~iL~~~a~~~ 177 (229)
T PRK06893 168 IVLQRNAYQR 177 (229)
T ss_pred HHHHHHHHHc
Confidence 9999999854
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.75 E-value=0.012 Score=43.34 Aligned_cols=44 Identities=41% Similarity=0.598 Sum_probs=36.6
Q ss_pred CCC-CchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC
Q 043908 210 EVP-LSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS 254 (462)
Q Consensus 210 ~iP-~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~ 254 (462)
.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 15 ~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 15 EIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred ccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 445 57799999999999975 6777775 66899999999999874
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.71 E-value=0.0033 Score=60.98 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=45.4
Q ss_pred CCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCCCCCCCCcccccCc
Q 043908 211 VPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCNGPPSSASCYLLFP 281 (462)
Q Consensus 211 iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~~~~~~~~~~~lp~ 281 (462)
+.+|+.-+++++.|++++| .+..+-+ +..|++|+.|||++.. +|-|.+.|.+.+|.-..-+. +..+-+
T Consensus 299 iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG-L~KLYS 375 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG-LRKLYS 375 (490)
T ss_pred hhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh-hHhhhh
Confidence 3466667777777777774 5555543 6677777777777632 33367777777765100000 111112
Q ss_pred ee-eeccCCCCC
Q 043908 282 IN-LMLRSSDLG 292 (462)
Q Consensus 282 ~~-L~Ls~n~l~ 292 (462)
+. ||+++|+|+
T Consensus 376 LvnLDl~~N~Ie 387 (490)
T KOG1259|consen 376 LVNLDLSSNQIE 387 (490)
T ss_pred heeccccccchh
Confidence 22 777777777
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.56 E-value=0.0045 Score=69.94 Aligned_cols=59 Identities=31% Similarity=0.441 Sum_probs=52.2
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCC----------CCCccEEEeecCC
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSK----------LKNLKALSFRGCN 268 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~----------L~~L~~L~l~~~~ 268 (462)
..+|.+|+.|-+|+||++++ +.+..||.++++|.+|.+|++..+.. |.+|++|.+..-.
T Consensus 585 ~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred CcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 46899999999999999998 68999999999999999999987664 5689999987654
No 32
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.51 E-value=0.022 Score=60.11 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=32.7
Q ss_pred hccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
--|.+++.|+|..| .+..+-+ ++..|++|+.|++++.. -.++|+.|+|+.|.
T Consensus 266 y~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 266 YGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred eeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 34557777777764 5555543 45677777777777632 12267777777776
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.48 E-value=0.0026 Score=66.49 Aligned_cols=111 Identities=24% Similarity=0.345 Sum_probs=59.9
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCcccccCc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
|..+..|+ |+.|-+++ ++++.+|+.|+-+..|..|+.+.|. .|.+|+.|.++.|. .-.|.. ...+|-
T Consensus 137 p~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~LpL 213 (722)
T KOG0532|consen 137 PDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLPL 213 (722)
T ss_pred ChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCce
Confidence 44444333 55555554 4556666666655666666666543 22366677777666 111211 223443
Q ss_pred eeeeccCCCCCcccCC-CccccccC-------cCCCccCC-CC-----CCccEEEeeCCC
Q 043908 282 INLMLRSSDLGALMLP-SLSELEDC-------KRLQSQPQ-LP-----PNVTEVRVNGCA 327 (462)
Q Consensus 282 ~~L~Ls~n~l~~L~lP-~l~~l~~c-------~~L~~lp~-l~-----~sL~~L~~~~C~ 327 (462)
..||+|+|++. .|| ++..+.+. .-|++=|. +- -=.++|+..-|.
T Consensus 214 i~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 33899999998 788 77633332 22333331 10 235788888884
No 34
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.60 E-value=0.016 Score=33.62 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=17.9
Q ss_pred CCcEEEecCCCCCCccCccCCCC
Q 043908 220 GLVQLTLKGCKNLSSLPATISSL 242 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L 242 (462)
+|++|++++| .+..+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999998 777999987654
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.59 E-value=0.015 Score=57.39 Aligned_cols=11 Identities=0% Similarity=0.084 Sum_probs=6.1
Q ss_pred CCccEEEeeCC
Q 043908 316 PNVTEVRVNGC 326 (462)
Q Consensus 316 ~sL~~L~~~~C 326 (462)
++|++|++++|
T Consensus 221 ~~L~~L~ls~n 231 (319)
T cd00116 221 KSLEVLNLGDN 231 (319)
T ss_pred CCCCEEecCCC
Confidence 45555555554
No 36
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.57 E-value=0.045 Score=57.78 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=24.4
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~ 252 (462)
..+.+|++|+.+++.+ +.+..+|...+-..+|+.|+|..
T Consensus 96 ~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred HHHhcCCcceeeeecc-chhhhcccccccccceeEEeeec
Confidence 3455666777777766 36666776555555666666654
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.56 E-value=0.023 Score=58.36 Aligned_cols=59 Identities=32% Similarity=0.526 Sum_probs=47.2
Q ss_pred CCCCCchhccC-CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC
Q 043908 209 EEVPLSIEHLS-GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN 268 (462)
Q Consensus 209 ~~iP~si~~L~-~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~ 268 (462)
.++|+.++.+. +|+.|++++ +.+..+|..++.+++|+.|+++++. .+.+|+.|++++|.
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred ccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence 46677778885 899999997 5788888888889999999988754 34478888888887
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.42 E-value=0.024 Score=62.49 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=57.5
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC-----------CCCCccEEEeecCCCCCCCC-------cc
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-----------KLKNLKALSFRGCNGPPSSA-------SC 276 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~~~~~~~-------~~ 276 (462)
..++++|..||+++ +++..+ .++++|++|++|.+.+.. +|++|+.||++......... -.
T Consensus 169 c~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 169 CASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred hhccCccceeecCC-CCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 35788999999998 688888 789999999999987643 56799999998765221110 12
Q ss_pred cccCcee-eeccCCCCCc
Q 043908 277 YLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~ 293 (462)
..+|++. ||.|++.+..
T Consensus 247 ~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCccccEEecCCcchhH
Confidence 4577766 8888877664
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.24 E-value=0.0075 Score=63.21 Aligned_cols=104 Identities=26% Similarity=0.368 Sum_probs=65.4
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCCC----------CccEEEeecCCCCCCCCccccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLK----------NLKALSFRGCNGPPSSASCYLL 279 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L~----------~L~~L~l~~~~~~~~~~~~~~l 279 (462)
-+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|.+++. +++ .|..|+.+.|. +..+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-------i~sl 181 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-------IQSL 181 (722)
T ss_pred ecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-------hhhc
Confidence 4677888888888888887 46777888887776 677777653 222 56667777666 3334
Q ss_pred Ccee--------eeccCCCCCcccCC-Ccc-------ccccCcCCCccCCC---CCCccEEEeeCC
Q 043908 280 FPIN--------LMLRSSDLGALMLP-SLS-------ELEDCKRLQSQPQL---PPNVTEVRVNGC 326 (462)
Q Consensus 280 p~~~--------L~Ls~n~l~~L~lP-~l~-------~l~~c~~L~~lp~l---~~sL~~L~~~~C 326 (462)
|+-+ |+++.|++. .+| .+. ++ .|.++..||-- ...|++|.+.+.
T Consensus 182 psql~~l~slr~l~vrRn~l~--~lp~El~~LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLE--DLPEELCSLPLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhh--hCCHHHhCCceeeeec-ccCceeecchhhhhhhhheeeeeccC
Confidence 4322 566667776 455 333 33 36677777722 266777777553
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.016 Score=56.44 Aligned_cols=77 Identities=26% Similarity=0.273 Sum_probs=46.3
Q ss_pred CchhccCCCcEEEecCCCCCCccCc--cCCCCCCcCEEeecCCCCCC------------CccEEEeecCCCCCCCC----
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPA--TISSLKSLRTLELSGCSKLK------------NLKALSFRGCNGPPSSA---- 274 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~--~i~~L~~L~~L~l~~c~~L~------------~L~~L~l~~~~~~~~~~---- 274 (462)
..|.+-.+|+.||++.|+.+.+--- -+.+++.|..|+++.|.-.. +|..|+++||......+
T Consensus 228 ~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 228 NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 3455556788888888877664322 23467778888888776333 77788888876322111
Q ss_pred cccccCcee-eeccCC
Q 043908 275 SCYLLFPIN-LMLRSS 289 (462)
Q Consensus 275 ~~~~lp~~~-L~Ls~n 289 (462)
.....|.+. ||||++
T Consensus 308 L~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHhCCceeeeccccc
Confidence 112345544 777763
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.31 E-value=0.057 Score=53.29 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=9.0
Q ss_pred CCccEEEeeCCC
Q 043908 316 PNVTEVRVNGCA 327 (462)
Q Consensus 316 ~sL~~L~~~~C~ 327 (462)
+.|++|++.+|.
T Consensus 250 ~~L~~L~l~~n~ 261 (319)
T cd00116 250 ISLLTLSLSCND 261 (319)
T ss_pred CCceEEEccCCC
Confidence 678888888773
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.068 Score=54.58 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=50.0
Q ss_pred CCCchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC-----------CCCCccEEEeecCCCCCCCCcccc
Q 043908 211 VPLSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS-----------KLKNLKALSFRGCNGPPSSASCYL 278 (462)
Q Consensus 211 iP~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~~~~~~~~~~~ 278 (462)
+-.-...|++|+.|+|+.|....-.-+. -..+++|+.|.|++|. ..++|+.|++.+|.+.........
T Consensus 164 v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~ 243 (505)
T KOG3207|consen 164 VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK 243 (505)
T ss_pred HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence 3345567889999999985432211111 1257889999999987 234888888888852211111112
Q ss_pred cCcee--eeccCCCCCc
Q 043908 279 LFPIN--LMLRSSDLGA 293 (462)
Q Consensus 279 lp~~~--L~Ls~n~l~~ 293 (462)
++.-. |||++|++-.
T Consensus 244 i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLID 260 (505)
T ss_pred hhhHHhhccccCCcccc
Confidence 22222 8888887763
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.40 E-value=0.03 Score=54.50 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=52.0
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccccCcee-ee
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYLLFPIN-LM 285 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~lp~~~-L~ 285 (462)
+.-...|+.|||++ +.+..+-+++--++.++.|+++..+ .|.+|+.|++++|.-..-...-..+-+.. |.
T Consensus 280 ~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 34455799999999 5889999998778999999999865 23388899999887100000001122222 77
Q ss_pred ccCCCCC
Q 043908 286 LRSSDLG 292 (462)
Q Consensus 286 Ls~n~l~ 292 (462)
|++|.++
T Consensus 359 La~N~iE 365 (490)
T KOG1259|consen 359 LAQNKIE 365 (490)
T ss_pred hhhhhHh
Confidence 8887777
No 44
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.13 E-value=0.14 Score=27.70 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=10.8
Q ss_pred CCccEEEeeCCCCCeeec
Q 043908 316 PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 316 ~sL~~L~~~~C~sL~~lp 333 (462)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 578899999987 87775
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.82 E-value=0.11 Score=57.29 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.8
Q ss_pred CCccEEEeeC
Q 043908 316 PNVTEVRVNG 325 (462)
Q Consensus 316 ~sL~~L~~~~ 325 (462)
|.|+.||.++
T Consensus 250 peLrfLDcSg 259 (699)
T KOG3665|consen 250 PELRFLDCSG 259 (699)
T ss_pred ccccEEecCC
Confidence 4566666654
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=90.62 E-value=0.39 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=14.5
Q ss_pred CccEEEeecCC-CCCCCCcccccCcee-eeccCCCCC
Q 043908 258 NLKALSFRGCN-GPPSSASCYLLFPIN-LMLRSSDLG 292 (462)
Q Consensus 258 ~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~n~l~ 292 (462)
+|++|++++|. ..+|. .+..+|.+. |++++|.|+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 35555555554 11111 023333333 666666665
No 47
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.86 E-value=0.24 Score=26.73 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=9.1
Q ss_pred CCCcEEEecCCCCCCccC
Q 043908 219 SGLVQLTLKGCKNLSSLP 236 (462)
Q Consensus 219 ~~L~~L~l~~c~~l~~LP 236 (462)
++|+.|++++|. +.+||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 367777777764 66665
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.61 E-value=0.23 Score=50.26 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=43.4
Q ss_pred chhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
.++.|++|+.|+|++| .+..+ +..+..+.+|+.|.|.+.. .+..|+.|+|++|.
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 3678999999999986 55555 5567789999999997743 55589999999998
No 49
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.83 E-value=2.6 Score=43.00 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=53.4
Q ss_pred CCCcEEEEeCCCCcc------------h---hHHHhhcCCCCC--CCCeEEEEEeCChh-----HHHHcCCCCcceEecC
Q 043908 49 TGPPFMVEDRSDRIL------------T---LFTTLKVAPIMA--AAAAGILITTRDRQ-----LLVAHEVDEEHILDLD 106 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~------------~---~~e~L~~~~~~~--~~GSrIIvTTR~~~-----V~~~~~~~~~~~y~v~ 106 (462)
....+|+|||++... + .+..+......+ ..+.+||.||...+ +......+. .+++.
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~--~i~v~ 291 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDR--IIEVP 291 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCce--EEEeC
Confidence 456799999997531 0 011222222211 34678888888543 322223344 89999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCC-ccHHHHHHH
Q 043908 107 VLNNDEALQFFSVKAFKSHRPV-GDYVELSER 137 (462)
Q Consensus 107 ~L~~~es~~LF~~~af~~~~~~-~~~~~l~~~ 137 (462)
..+.++..++|..++.+...+. -++.++++.
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~ 323 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAEDVDLEAIAKM 323 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCccCCHHHHHHH
Confidence 9999999999998886644332 356666653
No 50
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.50 E-value=13 Score=35.62 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=57.7
Q ss_pred cCCCcEEEEeCCCCcch-hHHHhhcCCCC---CCCCeEEEEEeCChhHHHHcC--------CCCcceEecCCCCHHHHHH
Q 043908 48 ATGPPFMVEDRSDRILT-LFTTLKVAPIM---AAAAAGILITTRDRQLLVAHE--------VDEEHILDLDVLNNDEALQ 115 (462)
Q Consensus 48 ~~Kr~LLVLDDVw~~~~-~~e~L~~~~~~---~~~GSrIIvTTR~~~V~~~~~--------~~~~~~y~v~~L~~~es~~ 115 (462)
.++++++|+||++.... .++.+...... .+..-.|++|...+ +..... ......+++++|+.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 47889999999987652 14544322111 12222445555432 222211 0001268999999999999
Q ss_pred HHHHhhhCCCC-CCccHHHHHHHHhcChhHHHHHHHhCCCCCcccHHHHhccC
Q 043908 116 FFSVKAFKSHR-PVGDYVELSERVLKDRDYVAKILEGCGFSPVIGIEVLIEKS 167 (462)
Q Consensus 116 LF~~~af~~~~-~~~~~~~l~~~Iv~~~~~l~~il~~~g~~~~~~i~~L~~~s 167 (462)
++...+-.... .... +..+.+..++..+|-.|.. ++.+.+..
T Consensus 200 ~l~~~l~~~g~~~~~~---------~~~~~~~~i~~~s~G~p~~-i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPV---------FSEGAFDAIHRFSRGIPRL-INILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCC---------cCHHHHHHHHHHcCCcccH-HHHHHHHH
Confidence 98876532211 1111 3344455666666655533 44444433
No 51
>PF13173 AAA_14: AAA domain
Probab=88.42 E-value=0.78 Score=39.15 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCCcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcC----CCCcceEecCCCCHHHH
Q 043908 49 TGPPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVAHE----VDEEHILDLDVLNNDEA 113 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~----~~~~~~y~v~~L~~~es 113 (462)
.++.+++||+|-...+ |.......-..++..+||+|+.+...+..-. ..+...++|.+|+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~-~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPD-WEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhcc-HHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3678899999988888 6655544444456789999999888874421 11112789999998874
No 52
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.06 E-value=2.4 Score=39.37 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCCCCcc-------hh---HHHhhcCCCCCCCCeEEEEEeCChhHHHH--------cCC
Q 043908 36 RNLARIIEAAAAATGPPFMVEDRSDRIL-------TL---FTTLKVAPIMAAAAAGILITTRDRQLLVA--------HEV 97 (462)
Q Consensus 36 ~~l~~i~~~~~~~~Kr~LLVLDDVw~~~-------~~---~e~L~~~~~~~~~GSrIIvTTR~~~V~~~--------~~~ 97 (462)
..+..+.+.....+++++||+||+.... .. +..+........ .-.+|+++-...+... .+.
T Consensus 104 ~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 104 SALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-NVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp --HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-TEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-CceEEEECCchHHHHHhhcccCccccc
Confidence 3455666666665677999999986544 11 111222211123 3345555555655544 122
Q ss_pred CCcceEecCCCCHHHHHHHHHHhh
Q 043908 98 DEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 98 ~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
.. .+.+++|+.+++++++...+
T Consensus 183 ~~--~~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 183 FS--HIELKPLSKEEAREFLKELF 204 (234)
T ss_dssp ----EEEE----HHHHHHHHHHHH
T ss_pred cc--eEEEeeCCHHHHHHHHHHHH
Confidence 22 69999999999999999754
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.69 E-value=0.41 Score=49.68 Aligned_cols=52 Identities=33% Similarity=0.401 Sum_probs=26.9
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN 268 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~ 268 (462)
+..+.+|++|++++ +.+..+. ++..++.|+.|+++++. .+.+|+.|++.+|.
T Consensus 114 l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhhhcchheeccc-ccccccc-chhhccchhhheeccCcchhccCCccchhhhcccCCcch
Confidence 44555666666665 3455553 34455555555555432 23355555555555
No 54
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.37 E-value=12 Score=42.67 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=42.5
Q ss_pred CCCcEEEEeCCCCcch--hHHHhhcCCCCCCCCeEEEEEeCChhHH--HHcCCCCcceEecC----CCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRILT--LFTTLKVAPIMAAAAAGILITTRDRQLL--VAHEVDEEHILDLD----VLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~--~~e~L~~~~~~~~~GSrIIvTTR~~~V~--~~~~~~~~~~y~v~----~L~~~es~~LF~~~ 120 (462)
+.+++|||||+-..++ ..+.+.........+-++|||||..--+ ....... ...++. +|+.+|+-+||...
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~-~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRD-QLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcC-cceecCHHhCCCCHHHHHHHHHhc
Confidence 6789999999965431 1122222222335567898999984211 1111111 155666 99999999999753
No 55
>PRK09087 hypothetical protein; Validated
Probab=85.18 E-value=4.2 Score=38.57 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=45.0
Q ss_pred cEEEEeCCCCc----chhHHHhhcCCCCCCCCeEEEEEeC---------ChhHHHHcCCCCcceEecCCCCHHHHHHHHH
Q 043908 52 PFMVEDRSDRI----LTLFTTLKVAPIMAAAAAGILITTR---------DRQLLVAHEVDEEHILDLDVLNNDEALQFFS 118 (462)
Q Consensus 52 ~LLVLDDVw~~----~~~~e~L~~~~~~~~~GSrIIvTTR---------~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~ 118 (462)
-+|++||+... +++++.+-.. ...|..||+|++ .+++...+.... ++++++++.++-.+++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~---~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl--~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSV---RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT--VVEIGEPDDALLSQVIF 163 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHH---HhCCCeEEEECCCChHHhccccccHHHHHhCCc--eeecCCCCHHHHHHHHH
Confidence 47889999532 2222222111 133667888886 355666665555 99999999999999999
Q ss_pred HhhhC
Q 043908 119 VKAFK 123 (462)
Q Consensus 119 ~~af~ 123 (462)
+++-.
T Consensus 164 ~~~~~ 168 (226)
T PRK09087 164 KLFAD 168 (226)
T ss_pred HHHHH
Confidence 87743
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=84.13 E-value=0.25 Score=53.68 Aligned_cols=19 Identities=42% Similarity=0.763 Sum_probs=12.9
Q ss_pred CCchhccCCCcEEEecCCC
Q 043908 212 PLSIEHLSGLVQLTLKGCK 230 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~ 230 (462)
|-+|-.++.|+.|.|.+|.
T Consensus 102 pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred CceeccccceeeEEecCcc
Confidence 5566667777777777763
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=83.95 E-value=0.72 Score=47.30 Aligned_cols=81 Identities=30% Similarity=0.399 Sum_probs=58.0
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCC-CcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCcccccCc
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLK-SLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~-~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
..+..++.+..|++.+ +.+..+|..++.+. +|+.|++++.. .+++|+.|++.+|. ...+.. ....+.
T Consensus 110 ~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhh
Confidence 4455667899999997 68899999998885 99999998743 45589999999998 111110 002333
Q ss_pred ee-eeccCCCCCcccCC
Q 043908 282 IN-LMLRSSDLGALMLP 297 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP 297 (462)
+. |++++|++. .+|
T Consensus 188 L~~L~ls~N~i~--~l~ 202 (394)
T COG4886 188 LNNLDLSGNKIS--DLP 202 (394)
T ss_pred hhheeccCCccc--cCc
Confidence 33 888888888 566
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=83.07 E-value=0.52 Score=47.00 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=26.3
Q ss_pred ccCCCcEEEecCCCCCCccCcc----CCCCCCcCEEeecCCC
Q 043908 217 HLSGLVQLTLKGCKNLSSLPAT----ISSLKSLRTLELSGCS 254 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~LP~~----i~~L~~L~~L~l~~c~ 254 (462)
..++|++|+||+|..-..-+.. |.+.+.|+.|.|.+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 3458999999997554333332 3457788888888876
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.87 E-value=0.68 Score=44.38 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=12.4
Q ss_pred CCCCccEEEeeCCCCCeee
Q 043908 314 LPPNVTEVRVNGCASLVTL 332 (462)
Q Consensus 314 l~~sL~~L~~~~C~sL~~l 332 (462)
+.++|++|+-.++..=+.-
T Consensus 141 ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred HhhhhccccccccCCcccc
Confidence 4478888887776554433
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=80.84 E-value=0.3 Score=48.65 Aligned_cols=56 Identities=29% Similarity=0.393 Sum_probs=37.7
Q ss_pred CchhccCCCcEEEecCCCCCC----ccCccCCCCCCcCEEeecCCC---------------CCCCccEEEeecCC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLS----SLPATISSLKSLRTLELSGCS---------------KLKNLKALSFRGCN 268 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~----~LP~~i~~L~~L~~L~l~~c~---------------~L~~L~~L~l~~~~ 268 (462)
..+.++++|+.|||++|.... .|-..+..+++|+.|++++|. ..++|++|.+.+|.
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 356778889999999876543 233445567788888888874 12267777776665
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.35 E-value=0.51 Score=43.68 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=36.7
Q ss_pred chhccCCCcEEEecCCCCCCccC-ccCC-CCCCcCEEeecCCCCCC-----------CccEEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLP-ATIS-SLKSLRTLELSGCSKLK-----------NLKALSFRGCN 268 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP-~~i~-~L~~L~~L~l~~c~~L~-----------~L~~L~l~~~~ 268 (462)
.+.+++.++.|.+.+|..+...- +.++ -.++|+.|+++||+..+ +|+.|.+.+-.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 45567788888888887765321 1222 34788999999988555 77777776543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.29 E-value=1.8 Score=41.48 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=36.8
Q ss_pred CCCCCCccEEEeecCC-----CCCCCCcccccCcee-eeccCCCCCcccCCCccccccCcCCCccCCCC--CCccEEEee
Q 043908 253 CSKLKNLKALSFRGCN-----GPPSSASCYLLFPIN-LMLRSSDLGALMLPSLSELEDCKRLQSQPQLP--PNVTEVRVN 324 (462)
Q Consensus 253 c~~L~~L~~L~l~~~~-----~~~~~~~~~~lp~~~-L~Ls~n~l~~L~lP~l~~l~~c~~L~~lp~l~--~sL~~L~~~ 324 (462)
.+.|++|+.|.++.|. ++... ....|++. |+|++|.+. . +.+++.++ .+|..|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~Nki~--------~------lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGNKIK--------D------LSTLRPLKELENLKSLDLF 124 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCCccc--------c------ccccchhhhhcchhhhhcc
Confidence 4455677777777773 11111 23346666 888888777 2 23333332 568888888
Q ss_pred CCCCCe
Q 043908 325 GCASLV 330 (462)
Q Consensus 325 ~C~sL~ 330 (462)
+|+...
T Consensus 125 n~~~~~ 130 (260)
T KOG2739|consen 125 NCSVTN 130 (260)
T ss_pred cCCccc
Confidence 887655
No 63
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=0.82 Score=46.98 Aligned_cols=78 Identities=26% Similarity=0.233 Sum_probs=45.8
Q ss_pred ccCCCcEEEecCCCCCC-ccCccCCCCCCcCEEeecCCCC----------CCCccEEEeecCCCCCCC--CcccccCcee
Q 043908 217 HLSGLVQLTLKGCKNLS-SLPATISSLKSLRTLELSGCSK----------LKNLKALSFRGCNGPPSS--ASCYLLFPIN 283 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~-~LP~~i~~L~~L~~L~l~~c~~----------L~~L~~L~l~~~~~~~~~--~~~~~lp~~~ 283 (462)
.+++|+.|.|+.|...- .+-.-+-..++|+.|+|.+... ++.|+.|+|++|.-..-. .....||.+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 67788888888884321 1222223567888888887632 227888888888722111 1234455544
Q ss_pred -eeccCCCCCcc
Q 043908 284 -LMLRSSDLGAL 294 (462)
Q Consensus 284 -L~Ls~n~l~~L 294 (462)
|+++.+.++.+
T Consensus 275 ~Lnls~tgi~si 286 (505)
T KOG3207|consen 275 QLNLSSTGIASI 286 (505)
T ss_pred hhhccccCcchh
Confidence 66666666544
No 64
>PRK08727 hypothetical protein; Validated
Probab=77.76 E-value=6.8 Score=37.22 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCcc---hhHHH-hhcCCCC-CCCCeEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHH
Q 043908 50 GPPFMVEDRSDRIL---TLFTT-LKVAPIM-AAAAAGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQ 115 (462)
Q Consensus 50 Kr~LLVLDDVw~~~---~~~e~-L~~~~~~-~~~GSrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~ 115 (462)
+--+|||||+.... + |+. +...... ..+|..||+|++. +++...++... ++++++++.++-.+
T Consensus 93 ~~dlLiIDDi~~l~~~~~-~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~--~~~l~~~~~e~~~~ 169 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI--RIGLPVLDDVARAA 169 (233)
T ss_pred cCCEEEEeCcccccCChH-HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc--eEEecCCCHHHHHH
Confidence 45699999996432 2 321 1111110 1346679999973 34445544444 89999999999999
Q ss_pred HHHHhhhC
Q 043908 116 FFSVKAFK 123 (462)
Q Consensus 116 LF~~~af~ 123 (462)
++.++|..
T Consensus 170 iL~~~a~~ 177 (233)
T PRK08727 170 VLRERAQR 177 (233)
T ss_pred HHHHHHHH
Confidence 99988764
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=74.31 E-value=27 Score=37.39 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEE-EEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGIL-ITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrII-vTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++-++|+|+++.-. + ++.|...+....+.+++| +||+...+........ ..+++++++.+|..+.+.+.+-.
T Consensus 127 ~~~KVvIIDEa~~Ls~~a-~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGA-FNALLKTLEEPPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred CCcEEEEEEChhhcCHHH-HHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 567789999998743 4 666665555445566754 5666666665543322 27999999999999999877654
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=74.17 E-value=2.5 Score=25.13 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=17.5
Q ss_pred cCCCcEEEecCCCCCCccCccCC
Q 043908 218 LSGLVQLTLKGCKNLSSLPATIS 240 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~LP~~i~ 240 (462)
|++|++|+|++| .+..+|...+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 568899999985 8888987654
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=74.17 E-value=2.5 Score=25.13 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=17.5
Q ss_pred cCCCcEEEecCCCCCCccCccCC
Q 043908 218 LSGLVQLTLKGCKNLSSLPATIS 240 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~LP~~i~ 240 (462)
|++|++|+|++| .+..+|...+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 568899999985 8888987654
No 68
>PRK05642 DNA replication initiation factor; Validated
Probab=73.49 E-value=7.8 Score=36.85 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=42.4
Q ss_pred EEEEeCCCCc---chhHHH-hhcCCCC-CCCCeEEEEEeCChh---------HHHHcCCCCcceEecCCCCHHHHHHHHH
Q 043908 53 FMVEDRSDRI---LTLFTT-LKVAPIM-AAAAAGILITTRDRQ---------LLVAHEVDEEHILDLDVLNNDEALQFFS 118 (462)
Q Consensus 53 LLVLDDVw~~---~~~~e~-L~~~~~~-~~~GSrIIvTTR~~~---------V~~~~~~~~~~~y~v~~L~~~es~~LF~ 118 (462)
+||+|||... .+ |+. +...+.. ...|.+||+|++..- +...++... +++++++++++-.+...
T Consensus 100 ~LiiDDi~~~~~~~~-~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl--~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 100 LVCLDDLDVIAGKAD-WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLAL--VFQMRGLSDEDKLRALQ 176 (234)
T ss_pred EEEEechhhhcCChH-HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCe--eeecCCCCHHHHHHHHH
Confidence 7899999632 23 432 2211111 134668888886432 223333333 89999999999999999
Q ss_pred HhhhC
Q 043908 119 VKAFK 123 (462)
Q Consensus 119 ~~af~ 123 (462)
.+|..
T Consensus 177 ~ka~~ 181 (234)
T PRK05642 177 LRASR 181 (234)
T ss_pred HHHHH
Confidence 77754
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=72.55 E-value=1.2 Score=48.81 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=37.1
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN 268 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~ 268 (462)
.+..|++|+.|||++ +.+..+|.---.--.|+.|+++++. +|++|+.||++.|-
T Consensus 204 ~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHHhccccccccccc-chhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhh
Confidence 567788888999988 4777777421111248888887632 66688888888775
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=1.7 Score=42.67 Aligned_cols=54 Identities=30% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCcEEEecCCCCCC---ccCccCCCCCCcCEEeecCCCCCC-----------CccEEEeecCCCCCCC
Q 043908 220 GLVQLTLKGCKNLS---SLPATISSLKSLRTLELSGCSKLK-----------NLKALSFRGCNGPPSS 273 (462)
Q Consensus 220 ~L~~L~l~~c~~l~---~LP~~i~~L~~L~~L~l~~c~~L~-----------~L~~L~l~~~~~~~~~ 273 (462)
+|+.|+|++|..-- .+..-..+.++|..|||+.|..++ .|++|+++.|.+.+|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~ 354 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE 354 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH
Confidence 46667777654311 111112356677777777766554 6777777777765553
No 71
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=71.67 E-value=5.4 Score=37.21 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCcc---hhHH-HhhcCCCC-CCCCeEEEEEeCCh---------hHHHHcCCCCcceEecCCCCHHHHHH
Q 043908 50 GPPFMVEDRSDRIL---TLFT-TLKVAPIM-AAAAAGILITTRDR---------QLLVAHEVDEEHILDLDVLNNDEALQ 115 (462)
Q Consensus 50 Kr~LLVLDDVw~~~---~~~e-~L~~~~~~-~~~GSrIIvTTR~~---------~V~~~~~~~~~~~y~v~~L~~~es~~ 115 (462)
+.-+|||||+.... . |. .+...... ...+.+||+||+.. ++...+.... .+++.+++.+|-..
T Consensus 90 ~~~lLvIDdi~~l~~~~~-~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~--~i~l~~l~~~e~~~ 166 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPE-WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL--VFQLPPLSDEEKIA 166 (226)
T ss_pred cCCEEEEeChhhhcCChH-HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe--eEecCCCCHHHHHH
Confidence 34489999997543 2 22 22221111 12344888888742 3333443333 79999999999999
Q ss_pred HHHHhh
Q 043908 116 FFSVKA 121 (462)
Q Consensus 116 LF~~~a 121 (462)
++...+
T Consensus 167 ~l~~~~ 172 (226)
T TIGR03420 167 ALQSRA 172 (226)
T ss_pred HHHHHH
Confidence 987654
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=68.92 E-value=12 Score=35.51 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=44.0
Q ss_pred cEEEEeCCCCc--chhHHHhh-cCCCC-CCCC-eEEEEEeCCh---------hHHHHcCCCCcceEecCCCCHHHHHHHH
Q 043908 52 PFMVEDRSDRI--LTLFTTLK-VAPIM-AAAA-AGILITTRDR---------QLLVAHEVDEEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 52 ~LLVLDDVw~~--~~~~e~L~-~~~~~-~~~G-SrIIvTTR~~---------~V~~~~~~~~~~~y~v~~L~~~es~~LF 117 (462)
-+|++|||... .+.|+... ..+.. ...| .++|+||+.. ++...+.... +++++++++++-.+++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~--~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ--IYKLQPLSDEEKLQAL 176 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc--eeeecCCCHHHHHHHH
Confidence 38999999543 11143211 11100 1123 3788998643 5556665555 9999999999999999
Q ss_pred HHhhhC
Q 043908 118 SVKAFK 123 (462)
Q Consensus 118 ~~~af~ 123 (462)
.++|-.
T Consensus 177 ~~~a~~ 182 (235)
T PRK08084 177 QLRARL 182 (235)
T ss_pred HHHHHH
Confidence 877654
No 73
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=67.29 E-value=58 Score=33.18 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCcEEEEeCCCCcc-----hhHHHhhcCCCCCCCCeE--EEEEeCChhHHHHcCC-----CCcceEecCCC
Q 043908 41 IIEAAAAATGPPFMVEDRSDRIL-----TLFTTLKVAPIMAAAAAG--ILITTRDRQLLVAHEV-----DEEHILDLDVL 108 (462)
Q Consensus 41 i~~~~~~~~Kr~LLVLDDVw~~~-----~~~e~L~~~~~~~~~GSr--IIvTTR~~~V~~~~~~-----~~~~~y~v~~L 108 (462)
+.+.....++..+||||+++... +.+..+...... ..+++ ||.++.+..+...... -....+.+.++
T Consensus 129 ~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py 207 (394)
T PRK00411 129 IAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPY 207 (394)
T ss_pred HHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCC
Confidence 33333333556899999998632 123344332221 23444 6777776654433211 00116789999
Q ss_pred CHHHHHHHHHHhh
Q 043908 109 NNDEALQFFSVKA 121 (462)
Q Consensus 109 ~~~es~~LF~~~a 121 (462)
+.++..+++..++
T Consensus 208 ~~~e~~~il~~r~ 220 (394)
T PRK00411 208 TADEIFDILKDRV 220 (394)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 74
>PRK06620 hypothetical protein; Validated
Probab=67.28 E-value=21 Score=33.40 Aligned_cols=68 Identities=7% Similarity=-0.052 Sum_probs=42.5
Q ss_pred CcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-------hHHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 51 PPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-------QLLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 51 r~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-------~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
.-++++|||....+ .+-.+.-... ..|..||+|++.. ++...+...- +++++++++++-.++..+.+-
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl--~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVL--SILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCc--eEeeCCCCHHHHHHHHHHHHH
Confidence 45889999964322 0111111111 3466899998733 3444555444 899999999998888887664
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=66.61 E-value=9.4 Score=35.60 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=17.7
Q ss_pred CCcEEEecCCCCCCccCccCCCCCCcCEEeecC
Q 043908 220 GLVQLTLKGCKNLSSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~ 252 (462)
+...++|++| .+..++. +-.++.|.+|.+..
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~n 73 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNN 73 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecC
Confidence 5677788874 5555542 33455555555543
No 76
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=63.90 E-value=24 Score=35.06 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=45.4
Q ss_pred CCcEEEEeCC--CCcchhHHHhhcCCCCCCCCeEEEEEeCChhHH-HHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 50 GPPFMVEDRS--DRILTLFTTLKVAPIMAAAAAGILITTRDRQLL-VAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 50 Kr~LLVLDDV--w~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~-~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
++=++|+||+ .+... ++.|...+..-.+++.+|++|.+.+.+ ....... .++++.++++++..+...+.
T Consensus 93 ~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred CceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 4445555655 45556 778877777667789988888766433 2222211 28999999999987766543
No 77
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=63.84 E-value=30 Score=32.54 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCcch--hHHH-hhcCCCC-CCCCeEEEEEeCCh---------hHHHHcCCCCcceEecCCCCHHHHHHH
Q 043908 50 GPPFMVEDRSDRILT--LFTT-LKVAPIM-AAAAAGILITTRDR---------QLLVAHEVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 50 Kr~LLVLDDVw~~~~--~~e~-L~~~~~~-~~~GSrIIvTTR~~---------~V~~~~~~~~~~~y~v~~L~~~es~~L 116 (462)
.-=+|++|||..... .|+. +...+.. ...|-+||+|++.. ++...+...- +++++++++++-.++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl--~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL--VVELQPPDDEDRRRI 174 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE--EEEE----HHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc--hhhcCCCCHHHHHHH
Confidence 455899999975431 1221 1111110 13466899999433 3444444444 899999999999999
Q ss_pred HHHhhhC
Q 043908 117 FSVKAFK 123 (462)
Q Consensus 117 F~~~af~ 123 (462)
+.++|-.
T Consensus 175 l~~~a~~ 181 (219)
T PF00308_consen 175 LQKKAKE 181 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988854
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.58 E-value=1.4 Score=42.86 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=14.5
Q ss_pred cCCCcEEEecCCCCCCccCccCC-CCCCcCEEeec
Q 043908 218 LSGLVQLTLKGCKNLSSLPATIS-SLKSLRTLELS 251 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~LP~~i~-~L~~L~~L~l~ 251 (462)
|.+.+.||+.+| .+..+ +|+ +|+.|++|.|+
T Consensus 18 l~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLS 49 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLS 49 (388)
T ss_pred HHHhhhhcccCC-CccHH--HHHHhcccceeEEee
Confidence 345556666665 33333 222 44445544444
No 79
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=61.80 E-value=82 Score=32.42 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCCcEEEEeCCCCc------------chhHHH---hhcCCCCC--CCCeEEEEEeCChhHHHHc-----CCCCcceEecC
Q 043908 49 TGPPFMVEDRSDRI------------LTLFTT---LKVAPIMA--AAAAGILITTRDRQLLVAH-----EVDEEHILDLD 106 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~------------~~~~e~---L~~~~~~~--~~GSrIIvTTR~~~V~~~~-----~~~~~~~y~v~ 106 (462)
....+|+|||++.. .+.... +......+ ..+-+||.||...+.+... ..+. .+++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~--~I~v~ 300 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDR--IIEVP 300 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCce--EEEEC
Confidence 45689999999753 110111 21111211 2356788888765433221 2344 89999
Q ss_pred CCCHHHHHHHHHHhhhCCCCC-CccHHHHHH
Q 043908 107 VLNNDEALQFFSVKAFKSHRP-VGDYVELSE 136 (462)
Q Consensus 107 ~L~~~es~~LF~~~af~~~~~-~~~~~~l~~ 136 (462)
..+.++-.++|..++.+...+ .-++..++.
T Consensus 301 ~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~ 331 (389)
T PRK03992 301 LPDEEGRLEILKIHTRKMNLADDVDLEELAE 331 (389)
T ss_pred CCCHHHHHHHHHHHhccCCCCCcCCHHHHHH
Confidence 999999999999877543332 245666655
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=60.78 E-value=29 Score=35.41 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCChh-HHHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDRQ-LLVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
+++-++|+||+...+. -.+.|......-..++.+|++|.+.+ +....... ...+.+.+|+.++..+++...
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SR-c~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSR-CRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhcc-ceEEECCCCCHHHHHHHHHHh
Confidence 5677899999976542 13444444333345667777777654 44333222 238999999999999999875
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=60.58 E-value=3.9 Score=42.45 Aligned_cols=78 Identities=27% Similarity=0.244 Sum_probs=52.5
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCC--------CCCCCccEEEeecCCCCCCCCcccccCcee-
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGC--------SKLKNLKALSFRGCNGPPSSASCYLLFPIN- 283 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c--------~~L~~L~~L~l~~~~~~~~~~~~~~lp~~~- 283 (462)
..++.+++|..|++.+ +.+..+...+..+++|++|++++. ..+..|+.|++.+|.-..... ...++.+.
T Consensus 89 ~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 3467888999999998 577877766788999999999873 345578899999988211110 11122222
Q ss_pred eeccCCCCC
Q 043908 284 LMLRSSDLG 292 (462)
Q Consensus 284 L~Ls~n~l~ 292 (462)
+++++|.+.
T Consensus 167 l~l~~n~i~ 175 (414)
T KOG0531|consen 167 LDLSYNRIV 175 (414)
T ss_pred ccCCcchhh
Confidence 677776655
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.57 E-value=0.99 Score=39.47 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=42.8
Q ss_pred CCCCCchh-ccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC
Q 043908 209 EEVPLSIE-HLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN 268 (462)
Q Consensus 209 ~~iP~si~-~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~ 268 (462)
+++|+.+. ..+-++.|+|.+ +.+..+|..+..++.|+.|+++..+ .|.+|-+|+..++.
T Consensus 66 k~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 46677664 445788999997 5889999999999999999988754 12255566655554
No 83
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=58.67 E-value=21 Score=32.37 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=45.0
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
+.+-++|+||+..... ..+.|........+.+.+|++|++. .+....... ..++++.+++.++..+...+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr-~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR-CQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh-cEEeeCCCCCHHHHHHHHHHc
Confidence 4566899999875431 1455555544445566777777654 443333221 238999999999988877765
No 84
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=57.92 E-value=15 Score=34.34 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=38.7
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCC-CCCcCEEeecCCC-----------CCCCccEEEeecCC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISS-LKSLRTLELSGCS-----------KLKNLKALSFRGCN 268 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~-L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~ 268 (462)
+.+..+..|.+|.|.+ +.+..+-+.++. +++|.+|.+.+.+ .++.|++|.+-+|.
T Consensus 58 ~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3456788899999997 588888777774 5678888888743 22255666665554
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=56.47 E-value=26 Score=38.52 Aligned_cols=73 Identities=18% Similarity=-0.022 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEE--EeCChhHHH-HcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILI--TTRDRQLLV-AHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIv--TTR~~~V~~-~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
.++++++.|+.|...+ .|+.+...+....+...|+| ||++...+. ..... ...+.+.+++.+|.++++.+.+-
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR-~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR-CAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhc-eeEEEeCCCCHHHHHHHHHHHHH
Confidence 5788888777775431 27777665555555555555 677554221 11111 11678999999999999998653
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.03 E-value=9.3 Score=22.71 Aligned_cols=15 Identities=47% Similarity=1.001 Sum_probs=7.8
Q ss_pred CCcCEEeecCCCCCC
Q 043908 243 KSLRTLELSGCSKLK 257 (462)
Q Consensus 243 ~~L~~L~l~~c~~L~ 257 (462)
++|+.|+|++|.+++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 345555555555443
No 87
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=54.72 E-value=0.88 Score=46.25 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=19.1
Q ss_pred chhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSG 252 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~ 252 (462)
.++.+++||.|||++| .+..+ |..+..|.+|-.|-+.|
T Consensus 86 aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred hccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhc
Confidence 4455666666666653 33333 44444555555554444
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.97 E-value=56 Score=33.23 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++-++|+|++..... -++.+...........++|++|.+. .+....... ...+++++++.++..+.....+-.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR-c~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR-CLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh-ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 3455899999986652 1566665555545567777766544 444333211 128999999999988888765543
No 89
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=51.86 E-value=8.8 Score=35.75 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCCCcch--hHHHhhcCCCCCCCCeEEEEEeCChhHHHHcC
Q 043908 49 TGPPFMVEDRSDRILT--LFTTLKVAPIMAAAAAGILITTRDRQLLVAHE 96 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~--~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~ 96 (462)
+.--++|||||...-+ -...+...+......+.+||||.++.++....
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566999999986542 01222222223355689999999999887653
No 90
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.89 E-value=39 Score=34.92 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=48.2
Q ss_pred CCcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHHc------CCCCcceEecCCCCHHHHHHH
Q 043908 50 GPPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVAH------EVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 50 Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~------~~~~~~~y~v~~L~~~es~~L 116 (462)
++..|+||.|-.... |+.....+-+.++. +|++|+-+..+...- |-.. .+++-||+..|-..+
T Consensus 94 ~~~yifLDEIq~v~~-W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~--~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPD-WERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGK--DLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchh-HHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCce--eEEECCCCHHHHHhh
Confidence 678999999999998 87766666666666 899998877765332 3333 899999999998764
No 91
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=49.20 E-value=46 Score=32.99 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCC-hhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 50 GPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRD-RQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 50 Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~-~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
.+-+||+||+..... ..+.|..........+++|+||.+ ..+....... ...+++.+++.++..+.+...+-
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr-~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR-CLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC-ceEEEecCCCHHHHHHHHHHHHH
Confidence 345899999975431 123343333333445677777754 3333333222 12789999999999888887654
No 92
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.55 E-value=36 Score=36.40 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeC-ChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTR-DRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR-~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++-++|+|+++.... .++.|............+|++|. .+.+...+.... ..|++.+++.++..+.+.+.+-.
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 4666899999986541 15666555544445566555554 445443333221 28999999999999999887654
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.82 E-value=29 Score=36.03 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEE--EeCChh--HHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILI--TTRDRQ--LLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIv--TTR~~~--V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++.+|++||++.-. + .+.|..... .|..++| ||.+.. +....... ..++++++|+.++.++++.+.+
T Consensus 91 g~~~vL~IDEi~~l~~~~-q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR-~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQ-QDALLPHVE---DGTITLIGATTENPSFEVNPALLSR-AQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc-ceeeEeCCCCHHHHHHHHHHHH
Confidence 578899999998654 3 455544432 3555554 344432 21111111 1289999999999999998754
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=47.53 E-value=57 Score=36.68 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=48.2
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCChh-HHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDRQ-LLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
++.=++|||++..... -++.|...+.......++|+||++.+ |...+-.. ...|+++.++.++..+.+.+.+-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR-Cq~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR-CLQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh-eEEEecCCcCHHHHHHHHHHHHH
Confidence 3445788999986552 26666665554455778777777654 33222211 12899999999999988887653
No 95
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=47.06 E-value=1.6e+02 Score=29.53 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCcEEEEeCCCCcc----hhHHHhhcCCCC-CC--CCeEEEEEeCChhHHHHcC----CCC-cceEecCCC
Q 043908 41 IIEAAAAATGPPFMVEDRSDRIL----TLFTTLKVAPIM-AA--AAAGILITTRDRQLLVAHE----VDE-EHILDLDVL 108 (462)
Q Consensus 41 i~~~~~~~~Kr~LLVLDDVw~~~----~~~e~L~~~~~~-~~--~GSrIIvTTR~~~V~~~~~----~~~-~~~y~v~~L 108 (462)
+.+.....+++++||||+++... +.+..+...... .. ..-.+|.+|...+....+. ..- ...+++++.
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~ 199 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPY 199 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCC
Confidence 33433333678899999998662 112233222101 11 2234566665554322221 000 126889999
Q ss_pred CHHHHHHHHHHhh
Q 043908 109 NNDEALQFFSVKA 121 (462)
Q Consensus 109 ~~~es~~LF~~~a 121 (462)
+.+|-.+++..++
T Consensus 200 ~~~e~~~il~~r~ 212 (365)
T TIGR02928 200 DAEELRDILENRA 212 (365)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998775
No 96
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=47.01 E-value=1.7e+02 Score=30.24 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCcc------------h---hHHHhhcCCCCC--CCCeEEEEEeCChhHHHH-----
Q 043908 37 NLARIIEAAAAATGPPFMVEDRSDRIL------------T---LFTTLKVAPIMA--AAAAGILITTRDRQLLVA----- 94 (462)
Q Consensus 37 ~l~~i~~~~~~~~Kr~LLVLDDVw~~~------------~---~~e~L~~~~~~~--~~GSrIIvTTR~~~V~~~----- 94 (462)
.+..+...... ....+|++|+++... + .+..+....+.+ ..+-+||.||...+.+..
T Consensus 226 ~lr~lf~~A~~-~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~ 304 (398)
T PTZ00454 226 MVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRP 304 (398)
T ss_pred HHHHHHHHHHh-cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCC
Confidence 34444444443 578899999986320 1 011122222211 235678888886654422
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHhhhCCCC-CCccHHHHHH
Q 043908 95 HEVDEEHILDLDVLNNDEALQFFSVKAFKSHR-PVGDYVELSE 136 (462)
Q Consensus 95 ~~~~~~~~y~v~~L~~~es~~LF~~~af~~~~-~~~~~~~l~~ 136 (462)
-..+. .+++...+.++..++|..+.-+... +.-++.+++.
T Consensus 305 GRfd~--~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 305 GRLDR--KIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVS 345 (398)
T ss_pred CcccE--EEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHH
Confidence 12344 7999999999999999866533222 3334555554
No 97
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.78 E-value=15 Score=36.37 Aligned_cols=55 Identities=33% Similarity=0.461 Sum_probs=35.9
Q ss_pred CCCCchhccCCCcEEEecCCCC---CCccCccCCCCCCcCEEeecCCC-----------CCCCccEEEeecC
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKN---LSSLPATISSLKSLRTLELSGCS-----------KLKNLKALSFRGC 267 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~---l~~LP~~i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~ 267 (462)
+|-.-+.+|++|++|+++.|.- ++++| -.+.+|++|-|.|.. .++.++.|.++.|
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4455568899999999996432 33444 256788999887732 3435556666655
No 98
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=44.78 E-value=91 Score=30.54 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=41.9
Q ss_pred CcEEEEeCCCCc----------chhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcCCC------CcceEecCCCCHHHHH
Q 043908 51 PPFMVEDRSDRI----------LTLFTTLKVAPIMAAAAAGILITTRDRQLLVAHEVD------EEHILDLDVLNNDEAL 114 (462)
Q Consensus 51 r~LLVLDDVw~~----------~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~~~------~~~~y~v~~L~~~es~ 114 (462)
.-+|+||++... .+.++.|.........+-+||.+|.....-.....+ -...+++.+++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 458899999622 111344444444444556777776543322111111 0127999999999999
Q ss_pred HHHHHhh
Q 043908 115 QFFSVKA 121 (462)
Q Consensus 115 ~LF~~~a 121 (462)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9998765
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=44.65 E-value=1e+02 Score=33.89 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=42.9
Q ss_pred cEEEEeCCCCcc--hhHHH----hhcCCCCCCCCeEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHHH
Q 043908 52 PFMVEDRSDRIL--TLFTT----LKVAPIMAAAAAGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 52 ~LLVLDDVw~~~--~~~e~----L~~~~~~~~~GSrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~L 116 (462)
=+|||||+.... +.|+. +.... ...|..|||||+. +.+...+...- +++++..+.+.-.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l--~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GL--vv~I~~PD~EtR~aI 454 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTL--HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGL--ITDVQPPELETRIAI 454 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHH--HhcCCCEEEecCCChHhhhhccHHHHhhhhcCc--eEEcCCCCHHHHHHH
Confidence 389999996431 10211 11111 1335568888875 23444444444 899999999999999
Q ss_pred HHHhhhC
Q 043908 117 FSVKAFK 123 (462)
Q Consensus 117 F~~~af~ 123 (462)
+.+++-.
T Consensus 455 L~kka~~ 461 (617)
T PRK14086 455 LRKKAVQ 461 (617)
T ss_pred HHHHHHh
Confidence 9988754
No 100
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=42.85 E-value=43 Score=27.66 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=25.4
Q ss_pred CCCcEEEEeCCCCc-----chhHHHhhcCCCCC---CCCeEEEEEeCChh
Q 043908 49 TGPPFMVEDRSDRI-----LTLFTTLKVAPIMA---AAAAGILITTRDRQ 90 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~-----~~~~e~L~~~~~~~---~~GSrIIvTTR~~~ 90 (462)
.+.-++|+||++.. .. +..+....... ..+.+||+||....
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNA-LLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHH-HHHHHHhcCceeccCCCeEEEEecCccc
Confidence 57789999999853 12 22222222221 46788999988664
No 101
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=42.20 E-value=8.2 Score=33.92 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=33.8
Q ss_pred hccCCCcEEEecCCCCCCccCccCC-CCCCcCEEeecCCC---------CCCCccEEEeecCC
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPATIS-SLKSLRTLELSGCS---------KLKNLKALSFRGCN 268 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~~i~-~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~ 268 (462)
....+|+..+|++ +.++.+|..+. +.+-+.+|++.... .++.|+.|+++.|.
T Consensus 50 ~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 50 SKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred hCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc
Confidence 3445678889998 47788888775 34467777776532 22366666666665
No 102
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.47 E-value=70 Score=35.40 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=47.2
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeE-EEEEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAG-ILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSr-IIvTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+|++.... . ++.|...+..-..+.+ |++||....+...+-... ..|.++.++.++..+.+.+.+
T Consensus 123 gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred CCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHH
Confidence 566689999998654 4 5666666554445566 555555556554432221 279999999999988887654
No 103
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=40.02 E-value=89 Score=32.44 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=49.8
Q ss_pred EEEEeCCCCcch--hHHH----hhcCCCCCCCCeEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHHHH
Q 043908 53 FMVEDRSDRILT--LFTT----LKVAPIMAAAAAGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 53 LLVLDDVw~~~~--~~e~----L~~~~~~~~~GSrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~LF 117 (462)
++++||++.... -|+. +.-.+. ..|-.||+|++. ..+....+..- ++++++++.+...+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl--~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGL--VVEIEPPDDETRLAIL 253 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhcee--EEeeCCCCHHHHHHHH
Confidence 899999964210 0111 111111 234489999843 34555555555 9999999999999999
Q ss_pred HHhhhCCCC--CCccHHHHHHHHh
Q 043908 118 SVKAFKSHR--PVGDYVELSERVL 139 (462)
Q Consensus 118 ~~~af~~~~--~~~~~~~l~~~Iv 139 (462)
.++|-.... +++...-+++.+.
T Consensus 254 ~kka~~~~~~i~~ev~~~la~~~~ 277 (408)
T COG0593 254 RKKAEDRGIEIPDEVLEFLAKRLD 277 (408)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhh
Confidence 987754332 4443444455444
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=39.31 E-value=85 Score=31.88 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeE-EEEEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAG-ILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSr-IIvTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
+++-++|+|++..... -.+.|...+..-..+.. |++|++-..++....... ..+++.+++.++..+.+.+.
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 6777999999986542 03344433332233445 555555545554443222 38999999999999999874
No 105
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=38.85 E-value=9.4 Score=39.63 Aligned_cols=35 Identities=34% Similarity=0.533 Sum_probs=17.4
Q ss_pred cCCCcEEEecCCCCCCc--cCccCCCCCCcCEEeecC
Q 043908 218 LSGLVQLTLKGCKNLSS--LPATISSLKSLRTLELSG 252 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~--LP~~i~~L~~L~~L~l~~ 252 (462)
.+.|+.|.+.+|..+.. +-......++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44555555555555444 212233455555555555
No 106
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.79 E-value=1.1e+02 Score=34.45 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCc--chhHHHhhcCCCCCCCCeEEEEE--eCChh--HHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRI--LTLFTTLKVAPIMAAAAAGILIT--TRDRQ--LLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~--~~~~e~L~~~~~~~~~GSrIIvT--TR~~~--V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++.+|+||||+.- .+ .+.|.... ..|+.++|+ |++.. +....-.. ..++.+++|+.++...++.+.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~q-QdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR-~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQ-QDALLPWV---ENGTITLIGATTENPYFEVNKALVSR-SRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHh---cCceEEEEEecCCChHhhhhhHhhcc-ccceecCCCCHHHHHHHHHHHH
Confidence 46779999999753 34 55665432 346666663 44432 22222111 1289999999999999998654
No 107
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=38.51 E-value=21 Score=21.67 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCCCccCc
Q 043908 220 GLVQLTLKGCKNLSSLPA 237 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~ 237 (462)
+|++|++++ +.+.+||+
T Consensus 3 ~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN-NQLTSLPE 19 (26)
T ss_pred ccceeecCC-CccccCcc
Confidence 688999998 47899986
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=36.79 E-value=1e+02 Score=32.53 Aligned_cols=71 Identities=7% Similarity=0.058 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCcc--hhH-HHhhcCCCC-CCCCeEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHHH
Q 043908 50 GPPFMVEDRSDRIL--TLF-TTLKVAPIM-AAAAAGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 50 Kr~LLVLDDVw~~~--~~~-e~L~~~~~~-~~~GSrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~L 116 (462)
+.-+|||||+.... +.+ +.+...+.. ...|..||+|+.. +.+...+...- +.++++++.++-.++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl--~~~L~~pd~e~r~~i 283 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGL--SIAIQKLDNKTATAI 283 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCc--eeccCCcCHHHHHHH
Confidence 45699999995432 101 222111111 1345578888652 23344444433 889999999999999
Q ss_pred HHHhhh
Q 043908 117 FSVKAF 122 (462)
Q Consensus 117 F~~~af 122 (462)
+.+++-
T Consensus 284 L~~~~~ 289 (450)
T PRK14087 284 IKKEIK 289 (450)
T ss_pred HHHHHH
Confidence 998874
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=36.42 E-value=1.6e+02 Score=29.27 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCc--chhHHHhhcCCCCCCCCeEEEEEeCChh-HHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRI--LTLFTTLKVAPIMAAAAAGILITTRDRQ-LLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~--~~~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
+++-++|+|++... .. .+.+..........+.+|++|.+.+ +....... ...++..+++.++..+.....+-
T Consensus 116 ~~~~vviidea~~l~~~~-~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSA-FNALLKTLEEPPEHVVFILATTEPHKIPATILSR-CQRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred CCceEEEEeChhhcCHHH-HHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHH
Confidence 45558899998654 23 4445444444445677777765544 33333211 12789999999998888887654
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=36.34 E-value=1.4e+02 Score=30.78 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHH
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSV 119 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~ 119 (462)
+++-++++||+..... -.+.|........++..+|++|.+. .+...+.... ..+.+.+++.++..+.+..
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence 4555788899986542 1344444433334566666666654 5554433221 2899999999999888874
No 111
>PLN03025 replication factor C subunit; Provisional
Probab=34.98 E-value=85 Score=31.19 Aligned_cols=74 Identities=9% Similarity=0.106 Sum_probs=45.1
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
++.-+++|||+..... .-+.|..........+++|+||... .+....... ..+++++++++++-.+.+...+-.
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR-c~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR-CAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh-hhcccCCCCCHHHHHHHHHHHHHH
Confidence 3456899999986541 0234443334445667877776543 332222111 127999999999999888876643
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.63 E-value=2.2e+02 Score=31.37 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCC-hhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRD-RQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~-~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++-++|+|++.... . .+.|...+..-.....+|++|.+ ..+...+.... ..+++++++.++..+.+...+..
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHH
Confidence 566789999997653 3 45555444333345566665544 55553332111 17899999999999888876654
No 113
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.84 E-value=1.2e+02 Score=34.95 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeC-ChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTR-DRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR-~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|||++.... . .+.|...+.......++|++|. ...+...+-... ..|++++|+.++..+.+.+.+
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHH
Confidence 677799999997654 4 5666655554455667555554 455553332211 289999999999998887654
No 114
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=32.78 E-value=1.7e+02 Score=29.46 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
+++=++|+|++..-.. -.+.|...+..-..++.+|+||.+. .++....... ..+.+.+++.+++.+.+...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 3444557799986542 1344443333323467777777665 4554443222 27999999999999888754
No 115
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=32.49 E-value=34 Score=33.56 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=26.0
Q ss_pred hhccCCCcEEEecCCCCCCccCccCC----CCCCcCEEeecCCC
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATIS----SLKSLRTLELSGCS 254 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~----~L~~L~~L~l~~c~ 254 (462)
+-.+++|+..+|++|..-...|+.++ +-+.|.+|.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 44567899999998877666666543 44555566655543
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=31.92 E-value=1.1e+02 Score=31.45 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=47.0
Q ss_pred CcEEEEeCCCCcc--hhH-HHhhcCCCC-CCCCeEEEEEeCC-hh--------HHHHcCCCCcceEecCCCCHHHHHHHH
Q 043908 51 PPFMVEDRSDRIL--TLF-TTLKVAPIM-AAAAAGILITTRD-RQ--------LLVAHEVDEEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 51 r~LLVLDDVw~~~--~~~-e~L~~~~~~-~~~GSrIIvTTR~-~~--------V~~~~~~~~~~~y~v~~L~~~es~~LF 117 (462)
.=+|||||+.... +.+ +.+...+.. ...|..||+|+.. .. +...++... +.++++.+.++-.+++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~--~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGL--VVDIEPPDLETRLAIL 277 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCe--EEEeCCCCHHHHHHHH
Confidence 3489999996421 101 112111111 1234567777753 22 222233223 7999999999999999
Q ss_pred HHhhhCCC--CCCccHHHHHHHHh
Q 043908 118 SVKAFKSH--RPVGDYVELSERVL 139 (462)
Q Consensus 118 ~~~af~~~--~~~~~~~~l~~~Iv 139 (462)
...+-... .+++.+.-+++.+-
T Consensus 278 ~~~~~~~~~~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 278 QKKAEEEGLELPDEVLEFIAKNIR 301 (405)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcC
Confidence 98875322 23334455555444
No 117
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=31.07 E-value=34 Score=19.61 Aligned_cols=11 Identities=27% Similarity=0.293 Sum_probs=4.5
Q ss_pred CCCcEEEecCC
Q 043908 219 SGLVQLTLKGC 229 (462)
Q Consensus 219 ~~L~~L~l~~c 229 (462)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34555555554
No 118
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.81 E-value=2e+02 Score=30.44 Aligned_cols=88 Identities=7% Similarity=0.041 Sum_probs=50.8
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCC-hhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhCCC
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRD-RQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFKSH 125 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~-~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~~~ 125 (462)
+++-++|+|++..-. + .+.|............+|++|.+ ..+........ ..+++++++.++-.+.+...+-...
T Consensus 116 ~~~kVvIIDE~h~Lt~~a-~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEA-FNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred CCeEEEEEEChHHhHHHH-HHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC
Confidence 456699999997543 3 34554444433334555544433 45544443222 3899999999998888887664322
Q ss_pred --CCCccHHHHHHHH
Q 043908 126 --RPVGDYVELSERV 138 (462)
Q Consensus 126 --~~~~~~~~l~~~I 138 (462)
..++.+..+++..
T Consensus 194 i~i~~eal~~Ia~~s 208 (472)
T PRK14962 194 IEIDREALSFIAKRA 208 (472)
T ss_pred CCCCHHHHHHHHHHh
Confidence 2333344455433
No 119
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=30.11 E-value=72 Score=31.82 Aligned_cols=45 Identities=18% Similarity=-0.024 Sum_probs=30.1
Q ss_pred CeEEEEEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 79 AAGILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 79 GSrIIvTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
.+-|..|||...+.......-+..+++++++.++..+++...+-.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 455777888655443321111127899999999999999987654
No 120
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.04 E-value=30 Score=34.32 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=16.5
Q ss_pred CCCcCEEeecC------------CCCCCCccEEEeecCC
Q 043908 242 LKSLRTLELSG------------CSKLKNLKALSFRGCN 268 (462)
Q Consensus 242 L~~L~~L~l~~------------c~~L~~L~~L~l~~~~ 268 (462)
.+.++.|+|.+ |.+|+.|+.|+++.|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 45666666655 3355567777776665
No 121
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=29.81 E-value=1.4e+02 Score=31.46 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCcc--hhH-HHhhcCCCC-CCCCeEEEEEeCC-h--------hHHHHcCCCCcceEecCCCCHHHHHHH
Q 043908 50 GPPFMVEDRSDRIL--TLF-TTLKVAPIM-AAAAAGILITTRD-R--------QLLVAHEVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 50 Kr~LLVLDDVw~~~--~~~-e~L~~~~~~-~~~GSrIIvTTR~-~--------~V~~~~~~~~~~~y~v~~L~~~es~~L 116 (462)
+.-+|++||+.... +.+ +.+...+.. ...|..||+||.. . .+...+...- ++++++++.++-.++
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl--~~~l~~pd~e~r~~i 279 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGI--AIPLHPLTKEGLRSF 279 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCe--EEecCCCCHHHHHHH
Confidence 34589999985431 101 111111110 1235578888754 2 2233333333 899999999999999
Q ss_pred HHHhhhC
Q 043908 117 FSVKAFK 123 (462)
Q Consensus 117 F~~~af~ 123 (462)
+.+++-.
T Consensus 280 L~~k~~~ 286 (445)
T PRK12422 280 LERKAEA 286 (445)
T ss_pred HHHHHHH
Confidence 9987743
No 122
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.75 E-value=2.4e+02 Score=31.12 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=46.2
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEe-CChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITT-RDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTT-R~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
++.=++|||+|..... -++.|...+..-....++|++| ....+....-.. ...++++.|+.++-.+.+.+.+-
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR-c~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR-CLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh-ceeeecCCCCHHHHHHHHHHHHH
Confidence 4455889999986541 1566666555444566766555 444444332211 12899999999998888876653
No 123
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=29.63 E-value=1.8e+02 Score=23.74 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=16.5
Q ss_pred hhccCCCcEEEecCCCCCCccCccC-CCCCCcCEEeecC
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATI-SSLKSLRTLELSG 252 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i-~~L~~L~~L~l~~ 252 (462)
+...++|+.+.+.. .+..++... ..+++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 44556777777763 455665543 3455677777654
No 124
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=29.45 E-value=5.4e+02 Score=27.31 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCCCCcc------------h---hHHHhhcCCCCC--CCCeEEEEEeCChhHH-----H
Q 043908 36 RNLARIIEAAAAATGPPFMVEDRSDRIL------------T---LFTTLKVAPIMA--AAAAGILITTRDRQLL-----V 93 (462)
Q Consensus 36 ~~l~~i~~~~~~~~Kr~LLVLDDVw~~~------------~---~~e~L~~~~~~~--~~GSrIIvTTR~~~V~-----~ 93 (462)
..+..+.+.... ....+|++||++... . ....+....+.+ ..|-.||.||...+.+ +
T Consensus 134 ~~l~~~f~~a~~-~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r 212 (495)
T TIGR01241 134 SRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLR 212 (495)
T ss_pred HHHHHHHHHHHh-cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhc
Confidence 344444444443 567899999995421 0 011222222211 2344577777665432 2
Q ss_pred HcCCCCcceEecCCCCHHHHHHHHHHhhhCCCC-CCccHHHHHHH
Q 043908 94 AHEVDEEHILDLDVLNNDEALQFFSVKAFKSHR-PVGDYVELSER 137 (462)
Q Consensus 94 ~~~~~~~~~y~v~~L~~~es~~LF~~~af~~~~-~~~~~~~l~~~ 137 (462)
....+. .+++...+.++-.++|..+.-.... +..++.+++..
T Consensus 213 ~gRfd~--~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~ 255 (495)
T TIGR01241 213 PGRFDR--QVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARR 255 (495)
T ss_pred CCcceE--EEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHh
Confidence 223444 8999999999999999876533222 23345555554
No 125
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.19 E-value=2.4e+02 Score=32.22 Aligned_cols=72 Identities=7% Similarity=0.074 Sum_probs=45.3
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEe-CChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITT-RDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTT-R~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++=++|||++..... -.+.|...+..-...+.+|++| ....|...+.... +.|++..++.++-.+.+.+..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHH
Confidence 4455788999986542 1455555555445566755544 4455665543222 389999999998887776543
No 126
>CHL00181 cbbX CbbX; Provisional
Probab=28.94 E-value=3.4e+02 Score=26.59 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=42.9
Q ss_pred cEEEEeCCCCc-----------chhHHHhhcCCCCCCCCeEEEEEeCChhHHHHc--------CCCCcceEecCCCCHHH
Q 043908 52 PFMVEDRSDRI-----------LTLFTTLKVAPIMAAAAAGILITTRDRQLLVAH--------EVDEEHILDLDVLNNDE 112 (462)
Q Consensus 52 ~LLVLDDVw~~-----------~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~--------~~~~~~~y~v~~L~~~e 112 (462)
-+|+||++... +. -+.|.........+-+||.+|..+.+.... .... .++.++++.+|
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~-~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~--~i~F~~~t~~e 200 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEA-IEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIAN--HVDFPDYTPEE 200 (287)
T ss_pred CEEEEEccchhccCCCccchHHHH-HHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCc--eEEcCCcCHHH
Confidence 48999999642 12 234444333444556777777644432111 1223 89999999999
Q ss_pred HHHHHHHhhhC
Q 043908 113 ALQFFSVKAFK 123 (462)
Q Consensus 113 s~~LF~~~af~ 123 (462)
-.+++...+-+
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998877643
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=28.51 E-value=93 Score=30.59 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=39.8
Q ss_pred CCcEEEEeCCCCc-c-hhHHHhhcCCCCCCCCeEEEEEeCChhHH-HHcCCCCcceEecCCCCHHHHHHHHHH
Q 043908 50 GPPFMVEDRSDRI-L-TLFTTLKVAPIMAAAAAGILITTRDRQLL-VAHEVDEEHILDLDVLNNDEALQFFSV 119 (462)
Q Consensus 50 Kr~LLVLDDVw~~-~-~~~e~L~~~~~~~~~GSrIIvTTR~~~V~-~~~~~~~~~~y~v~~L~~~es~~LF~~ 119 (462)
.+-++|+||+... . +..+.+.........+.++|+||...+-+ ...... ...+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR-~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR-CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh-ceEEEeCCCCHHHHHHHHHH
Confidence 4557899999765 1 21233333233345677899988754322 211111 11678888888888776653
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.45 E-value=3.9e+02 Score=29.42 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEE-EeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILI-TTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIv-TTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++=++|+|++..-.. -++.|...+..-..++.+|+ ||+.+.+........ .++++++++.++..+.+.+.+-.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH
Confidence 4555889999876442 14555554444445677554 556666665543221 28999999999988888765543
No 129
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=28.27 E-value=2.4e+02 Score=28.52 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCC-hhHHHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRD-RQLLVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~-~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
+++=++|+||+.... . .+.|.+.+.--.+++.+|.+|.+ ..++...-... ..+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 455588899998655 3 45555554444567775555554 66665543322 28999999999999888764
No 130
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.94 E-value=2.3e+02 Score=30.71 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=44.6
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEE-EEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGIL-ITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrII-vTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+||+..... .++.|...+.......++| +||....+....... ..++++++++.++-.+.+.+.+
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR-c~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR-CIQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh-eeeEEeCCCCHHHHHHHHHHHH
Confidence 5677999999975442 1555655555444566655 455444454332211 1289999999999877776543
No 131
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.88 E-value=1.1e+02 Score=33.82 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=46.0
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCChh-HHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRDRQ-LLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
+++=++|+|+|.... . .+.|.........+.++|+||.+.. +....- .+...+++++|+.++..+.+.+.+-
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl-SRCq~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFATTDPQKLPITVI-SRCLQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEECChHhhhHHHH-HhhheeeccCCCHHHHHHHHHHHHH
Confidence 566689999998654 3 4555544444345667777776643 322211 1112899999999998888876653
No 132
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.41 E-value=2.1e+02 Score=28.88 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEe-CChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITT-RDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTT-R~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++-++++|++..... .++.+..........+.+|++| +.+.+....... ..+++.++++.++....+...+-.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr-~~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR-CQIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc-ceeEecCCccHHHHHHHHHHHHHH
Confidence 4555899999865331 1455543333223345655554 444444333211 128999999999998888876654
No 133
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=27.17 E-value=1.6e+02 Score=32.62 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=45.2
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEE-EeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILI-TTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIv-TTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+|++.... . .+.|...+..-....++|. ||....+...+-... ..|++++|+.++..+.+.+.+
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHH
Confidence 567799999997654 3 4555554444344566554 554455543332221 289999999999988887654
No 134
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.01 E-value=2.5e+02 Score=29.97 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEe-CChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITT-RDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTT-R~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++=++|+|++..-.. -.+.|...+..-.+..++|++| ..+.+........ ..+++++++.++-.+.+.+.+-.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHH
Confidence 4555899999965432 1455554444444567755544 5556655442221 28999999999988888876644
No 135
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=26.88 E-value=1.5e+02 Score=28.94 Aligned_cols=44 Identities=23% Similarity=0.052 Sum_probs=29.7
Q ss_pred CeEEEEEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 79 AAGILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 79 GSrIIvTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
.+-|.+|||...+....-..-...+++++++.+|..+++...+-
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 45677778875544332111011789999999999999998764
No 136
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=26.67 E-value=2.4e+02 Score=27.64 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=29.9
Q ss_pred cCCCcEEEEeCCCCcc-----hhHHHhhcCCCCCCCCeEEEEEeCChhHHHHc
Q 043908 48 ATGPPFMVEDRSDRIL-----TLFTTLKVAPIMAAAAAGILITTRDRQLLVAH 95 (462)
Q Consensus 48 ~~Kr~LLVLDDVw~~~-----~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~ 95 (462)
.++|.++|+||+++-. ++|+.+...+. .++..+|+..-.+.|....
T Consensus 170 ~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai 220 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAI 220 (325)
T ss_pred CCceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHH
Confidence 3789999999999743 24555544333 2677777777666665544
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=26.41 E-value=3.4e+02 Score=25.90 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=39.9
Q ss_pred cEEEEeCCCC----------cchhHHHhhcCCCCCCCCeEEEEEeCChhH----------HHHcCCCCcceEecCCCCHH
Q 043908 52 PFMVEDRSDR----------ILTLFTTLKVAPIMAAAAAGILITTRDRQL----------LVAHEVDEEHILDLDVLNND 111 (462)
Q Consensus 52 ~LLVLDDVw~----------~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V----------~~~~~~~~~~~y~v~~L~~~ 111 (462)
-+|++|++.. .++ .+.+..........-++|+++..... ...+ .. .++++.++.+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~-i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~--~i~f~~~~~~ 181 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEA-IDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PI--SIDFPDYTVE 181 (261)
T ss_pred CEEEEechhhhccCCccchHHHH-HHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ce--EEEECCCCHH
Confidence 4889999974 122 34454444333333456666543322 2222 22 6899999999
Q ss_pred HHHHHHHHhhh
Q 043908 112 EALQFFSVKAF 122 (462)
Q Consensus 112 es~~LF~~~af 122 (462)
|-.+++.+.+-
T Consensus 182 el~~Il~~~~~ 192 (261)
T TIGR02881 182 ELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999987664
No 138
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=26.17 E-value=2.3e+02 Score=23.22 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=37.6
Q ss_pred cHhHHHHHHHHHhCCC------hhHHHHHHHHHHhcCCCcEEEEeCCCCc-c-hhHHHhhcCCCCCCCCeEEEEEeCC
Q 043908 19 DEKALPALLLVLFGTS------HRNLARIIEAAAAATGPPFMVEDRSDRI-L-TLFTTLKVAPIMAAAAAGILITTRD 88 (462)
Q Consensus 19 d~~~l~~~l~~~~~~~------~~~l~~i~~~~~~~~Kr~LLVLDDVw~~-~-~~~e~L~~~~~~~~~GSrIIvTTR~ 88 (462)
+...+.+.+.+.++.. ..++.+.+.+...+.+..+||+||+..- . +.++.|..... ..+-+||+.-+.
T Consensus 50 ~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 50 TPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3445555566666544 2233333333333355579999999765 3 22555644433 566777777655
No 139
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=26.09 E-value=61 Score=28.75 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCChh-HHHHcCCCCcceEecCCCC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDRQ-LLVAHEVDEEHILDLDVLN 109 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~~~~~~~~y~v~~L~ 109 (462)
+++=++|+||+..... -.++|...+..-..++++|++|++.+ |+....... ..+.+.+|+
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTS-EEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhc-eEEecCCCC
Confidence 4556889999987541 14556555455567899888888765 454443322 156666653
No 140
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=26.06 E-value=1.3e+02 Score=31.46 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred CcEEEEeCCCCcc--hhH-HHhhcCCCC-CCCCeEEEEEeCCh---------hHHHHcCCCCcceEecCCCCHHHHHHHH
Q 043908 51 PPFMVEDRSDRIL--TLF-TTLKVAPIM-AAAAAGILITTRDR---------QLLVAHEVDEEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 51 r~LLVLDDVw~~~--~~~-e~L~~~~~~-~~~GSrIIvTTR~~---------~V~~~~~~~~~~~y~v~~L~~~es~~LF 117 (462)
--+||||||.... +.+ +.+...+.. ...|..||+||... .+...+.... ++++++++.++-.+++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl--~v~i~~pd~~~r~~il 289 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGL--TVDIEPPDLETRIAIL 289 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCe--eEEecCCCHHHHHHHH
Confidence 4489999995321 101 111111100 12345677777542 2233444333 8999999999999999
Q ss_pred HHhhhC
Q 043908 118 SVKAFK 123 (462)
Q Consensus 118 ~~~af~ 123 (462)
.+++-.
T Consensus 290 ~~~~~~ 295 (450)
T PRK00149 290 KKKAEE 295 (450)
T ss_pred HHHHHH
Confidence 988753
No 141
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=26.04 E-value=1.4e+02 Score=26.73 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCcEEEEeCCCCc-----chhHHHhhcCCCCCCCCeEEEEEeCChh
Q 043908 49 TGPPFMVEDRSDRI-----LTLFTTLKVAPIMAAAAAGILITTRDRQ 90 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~-----~~~~e~L~~~~~~~~~GSrIIvTTR~~~ 90 (462)
++-=|+|||++--. -+ .+.+.........+.-||+|.|+..
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~-~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLD-VEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred CCCCEEEEechHhHhhCCCCC-HHHHHHHHHcCCCCCEEEEECCCCC
Confidence 45559999998432 11 2233333333344568999999864
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=25.45 E-value=6.3e+02 Score=28.44 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=45.3
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeE-EEEEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAG-ILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSr-IIvTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+|++.... . +++|...+..-..... |++||+...+........ ..+++.+++.++-.+.+...+
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHH
Confidence 566688999987543 3 5666554444344555 455555556654432211 289999999999888887654
No 143
>CHL00195 ycf46 Ycf46; Provisional
Probab=24.61 E-value=3.9e+02 Score=28.51 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHHHHhcCCCcEEEEeCCCCcch-------------hHHHhhcCCCCCCCCeEEEEEeCChhH-----HH
Q 043908 32 GTSHRNLARIIEAAAAATGPPFMVEDRSDRILT-------------LFTTLKVAPIMAAAAAGILITTRDRQL-----LV 93 (462)
Q Consensus 32 ~~~~~~l~~i~~~~~~~~Kr~LLVLDDVw~~~~-------------~~e~L~~~~~~~~~GSrIIvTTR~~~V-----~~ 93 (462)
|.....+.++.+.... ....+|.+|+++.... ....+.........+--||.||.+.+- .+
T Consensus 301 Gese~~l~~~f~~A~~-~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 301 GESESRMRQMIRIAEA-LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred ChHHHHHHHHHHHHHh-cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhC
Confidence 3334445555544433 5789999999963210 011111111111223346667766543 22
Q ss_pred HcCCCCcceEecCCCCHHHHHHHHHHhhhCCCC---CCccHHHHHH
Q 043908 94 AHEVDEEHILDLDVLNNDEALQFFSVKAFKSHR---PVGDYVELSE 136 (462)
Q Consensus 94 ~~~~~~~~~y~v~~L~~~es~~LF~~~af~~~~---~~~~~~~l~~ 136 (462)
.-..+. .+.+...+.++-.++|..+.-+... ...++..+++
T Consensus 380 ~GRFD~--~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~ 423 (489)
T CHL00195 380 KGRFDE--IFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSK 423 (489)
T ss_pred CCcCCe--EEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHh
Confidence 224455 8999999999999999977644221 2334555554
No 144
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=24.47 E-value=4e+02 Score=29.96 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=59.4
Q ss_pred HhCCChhHHHHHHHHHHhcCCCcEEEEeCCCCcc-------------hhHHHhhcCCCCC--CCCeEEEEEeCChhHHHH
Q 043908 30 LFGTSHRNLARIIEAAAAATGPPFMVEDRSDRIL-------------TLFTTLKVAPIMA--AAAAGILITTRDRQLLVA 94 (462)
Q Consensus 30 ~~~~~~~~l~~i~~~~~~~~Kr~LLVLDDVw~~~-------------~~~e~L~~~~~~~--~~GSrIIvTTR~~~V~~~ 94 (462)
..|.....+..+...... ....+|++|+++... .....+....+.. ..+-.||.||...+.+..
T Consensus 527 ~vGese~~i~~~f~~A~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQ-AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred ccCcHHHHHHHHHHHHHh-cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 344444455555555444 567899999985320 0112232222221 234457778876665432
Q ss_pred c-----CCCCcceEecCCCCHHHHHHHHHHhhhCCCC-CCccHHHHHHH
Q 043908 95 H-----EVDEEHILDLDVLNNDEALQFFSVKAFKSHR-PVGDYVELSER 137 (462)
Q Consensus 95 ~-----~~~~~~~y~v~~L~~~es~~LF~~~af~~~~-~~~~~~~l~~~ 137 (462)
. ..+. .+.+...+.++-.++|..+.-+... +..++..+++.
T Consensus 606 allRpgRfd~--~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~ 652 (733)
T TIGR01243 606 ALLRPGRFDR--LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEM 652 (733)
T ss_pred hhcCCCccce--EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 2 2344 8999999999999999866433222 33356666653
No 145
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=23.57 E-value=2.1e+02 Score=30.02 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCeEEEEEeCChhHHHHc-----CCCCcceEecCCCCHHHHHHHHHHhhhCCCC-CCccHHHHHH
Q 043908 78 AAAGILITTRDRQLLVAH-----EVDEEHILDLDVLNNDEALQFFSVKAFKSHR-PVGDYVELSE 136 (462)
Q Consensus 78 ~GSrIIvTTR~~~V~~~~-----~~~~~~~y~v~~L~~~es~~LF~~~af~~~~-~~~~~~~l~~ 136 (462)
.+-+||.||...+.+... ..+. .+++...+.++..++|..++-+-.. ..-++.+++.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~--~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~ 383 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDR--KIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIM 383 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEE--EEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHH
Confidence 356788888866655432 2333 8999999999999999987644322 2234555544
No 146
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=38 Score=31.65 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCCC------------CccEEEeecCC
Q 043908 220 GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLK------------NLKALSFRGCN 268 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L~------------~L~~L~l~~~~ 268 (462)
.++.++-+++.-..+=-+.+.++++++.|.+..|..+. +|+.|+|++|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 35666666543222112345567778888888877655 78888888877
No 147
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.95 E-value=1.3e+02 Score=30.88 Aligned_cols=71 Identities=8% Similarity=0.007 Sum_probs=44.8
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEe-CChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITT-RDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTT-R~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+|++.... + ++.+........+.+.+|++| +-..+........ .++++++++.++..+.+...+
T Consensus 126 ~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred CCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH
Confidence 456688999997543 4 566655555445567766554 5455554332111 178999999988887776554
No 148
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=22.09 E-value=2.6e+02 Score=29.98 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCCcc---------h----hHHHhhcCCCCC--CCCeEEEEEeCChhHHHH-----cCCCCcceEecCCC
Q 043908 49 TGPPFMVEDRSDRIL---------T----LFTTLKVAPIMA--AAAAGILITTRDRQLLVA-----HEVDEEHILDLDVL 108 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~---------~----~~e~L~~~~~~~--~~GSrIIvTTR~~~V~~~-----~~~~~~~~y~v~~L 108 (462)
+++.+|++|+++... + ....+....+.. ..+-.||.||...+.+.. -..+. .+++...
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~--~I~~~~P 365 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDV--KIRIERP 365 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccce--EEEeCCC
Confidence 578999999997421 1 111222222222 234456777766554322 13344 7999999
Q ss_pred CHHHHHHHHHHhh
Q 043908 109 NNDEALQFFSVKA 121 (462)
Q Consensus 109 ~~~es~~LF~~~a 121 (462)
+.++..++|..+.
T Consensus 366 d~e~r~~Il~~~l 378 (512)
T TIGR03689 366 DAEAAADIFSKYL 378 (512)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999874
No 149
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.98 E-value=3.5e+02 Score=28.14 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCC--cchhHHHhhcCCCCCCCCeEEEE--EeCChhHH--HHc-CCCCcceEecCCCCHHHHHHHHHH
Q 043908 49 TGPPFMVEDRSDR--ILTLFTTLKVAPIMAAAAAGILI--TTRDRQLL--VAH-EVDEEHILDLDVLNNDEALQFFSV 119 (462)
Q Consensus 49 ~Kr~LLVLDDVw~--~~~~~e~L~~~~~~~~~GSrIIv--TTR~~~V~--~~~-~~~~~~~y~v~~L~~~es~~LF~~ 119 (462)
++|.+|.+|.|-+ +.| =+.+. +....|.-|+| ||-|..-. ... .-.. +|++++|+.+|-.++..+
T Consensus 103 gr~tiLflDEIHRfnK~Q-QD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~--vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQ-QDALL---PHVENGTIILIGATTENPSFELNPALLSRAR--VFELKPLSSEDIKKLLKR 174 (436)
T ss_pred CCceEEEEehhhhcChhh-hhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhh--eeeeecCCHHHHHHHHHH
Confidence 7899999999964 334 24443 33467877776 66666421 111 1123 999999999999999987
No 150
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=21.81 E-value=5.4e+02 Score=25.44 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=45.0
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEe-CChhHHHHcCCCCcceEecCCCCHHHHHHHHHHh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITT-RDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTT-R~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~ 120 (462)
+++=++|+||+....+ -.++|...+..-.+++.+|++| .-+.++....... .++++.++++++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHHHHHHc
Confidence 4677888899865542 1344444444445667766555 5566665543222 28999999999988777653
No 151
>CHL00176 ftsH cell division protein; Validated
Probab=21.60 E-value=6.1e+02 Score=28.09 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCcc---------------hhHHHhhcCCCCC--CCCeEEEEEeCChhHHHH-----cC
Q 043908 39 ARIIEAAAAATGPPFMVEDRSDRIL---------------TLFTTLKVAPIMA--AAAAGILITTRDRQLLVA-----HE 96 (462)
Q Consensus 39 ~~i~~~~~~~~Kr~LLVLDDVw~~~---------------~~~e~L~~~~~~~--~~GSrIIvTTR~~~V~~~-----~~ 96 (462)
..+.++... +...+|+|||++... +.+..+....+.+ ..|-.||.||...+.+.. -.
T Consensus 265 r~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGR 343 (638)
T CHL00176 265 RDLFKKAKE-NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGR 343 (638)
T ss_pred HHHHHHHhc-CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcccc
Confidence 334444443 678899999996321 1122333222222 335567778877554432 12
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 97 VDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 97 ~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
.+. .+.+...+.++-.++++.++-.
T Consensus 344 Fd~--~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 344 FDR--QITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred Cce--EEEECCCCHHHHHHHHHHHHhh
Confidence 334 8899999999999999887643
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.48 E-value=7.3e+02 Score=27.39 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=43.7
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEE-EEeCChhHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGIL-ITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrII-vTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++=++|+|++..... -.+.|...+..-...+.+| +||+.+.+....... ..++++++++.++....+.+.+
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR-c~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR-CQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh-ceEEecCCCCHHHHHHHHHHHH
Confidence 4555789999876542 1444544444334456655 555555665443221 1289999999998877776554
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=21.46 E-value=1.9e+02 Score=30.33 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCcc-------hhHHHhhcCCCCCCCCeEEEEEeC-ChhHH--------HHcCCCCcceEecCCCCHHHH
Q 043908 50 GPPFMVEDRSDRIL-------TLFTTLKVAPIMAAAAAGILITTR-DRQLL--------VAHEVDEEHILDLDVLNNDEA 113 (462)
Q Consensus 50 Kr~LLVLDDVw~~~-------~~~e~L~~~~~~~~~GSrIIvTTR-~~~V~--------~~~~~~~~~~y~v~~L~~~es 113 (462)
+.-+||+||+.... +++..+.... ..|..||+||. ...-+ ..+...- +.++++.+.+.-
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~---~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl--~v~i~~pd~e~r 268 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQKLSEFQDRLVSRFQMGL--VAKLEPPDEETR 268 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH---HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCc--eEeeCCCCHHHH
Confidence 34589999997421 2222221111 23457888874 33322 2233333 889999999999
Q ss_pred HHHHHHhhh
Q 043908 114 LQFFSVKAF 122 (462)
Q Consensus 114 ~~LF~~~af 122 (462)
.+++.+++-
T Consensus 269 ~~IL~~~~~ 277 (440)
T PRK14088 269 KKIARKMLE 277 (440)
T ss_pred HHHHHHHHH
Confidence 999998874
No 154
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=21.22 E-value=1.6e+02 Score=28.63 Aligned_cols=72 Identities=8% Similarity=0.108 Sum_probs=42.2
Q ss_pred CcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCC-hhHHHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 51 PPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRD-RQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 51 r~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~-~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+-++++|++..... ..+.|..........+++|+|+.. +.+....... ...+++++++.++........+-.
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR-CAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH-hheeeeCCCCHHHHHHHHHHHHHH
Confidence 45899999865431 133444433444455677777643 2232221111 127899999999988888876643
No 155
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=2.4e+02 Score=30.46 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCcch-----------hHHHhhcCCCCC-CCCeE--EEEEeCChhHHHHcCCCC--c
Q 043908 37 NLARIIEAAAAATGPPFMVEDRSDRILT-----------LFTTLKVAPIMA-AAAAG--ILITTRDRQLLVAHEVDE--E 100 (462)
Q Consensus 37 ~l~~i~~~~~~~~Kr~LLVLDDVw~~~~-----------~~e~L~~~~~~~-~~GSr--IIvTTR~~~V~~~~~~~~--~ 100 (462)
++.++.+...+ ..--.||+||+-..-+ .+++|.-.++.. ..|-| |+-||-...|++.|+... .
T Consensus 586 ~i~k~F~DAYk-S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~ 664 (744)
T KOG0741|consen 586 HIKKIFEDAYK-SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFS 664 (744)
T ss_pred HHHHHHHHhhc-CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhh
Confidence 34445555444 5667899999965544 122322111111 22434 777888899999997642 2
Q ss_pred ceEecCCCCH-HHHHHHHHHh
Q 043908 101 HILDLDVLNN-DEALQFFSVK 120 (462)
Q Consensus 101 ~~y~v~~L~~-~es~~LF~~~ 120 (462)
..|.|..|+. ++..+..+..
T Consensus 665 ~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 665 STIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred heeecCccCchHHHHHHHHHc
Confidence 2789999987 7777777754
No 156
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=20.03 E-value=55 Score=33.83 Aligned_cols=52 Identities=33% Similarity=0.630 Sum_probs=25.4
Q ss_pred ccCCCcEEEecCCCCCCccC-ccCC-CCCCcCEEeecCCCCCC------------CccEEEeecCC
Q 043908 217 HLSGLVQLTLKGCKNLSSLP-ATIS-SLKSLRTLELSGCSKLK------------NLKALSFRGCN 268 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~LP-~~i~-~L~~L~~L~l~~c~~L~------------~L~~L~l~~~~ 268 (462)
.+.+|+.|++++|..+...- ..+. .+++|++|.+.+|..++ +|+.|++++|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 33455556665554322110 1111 24566666665565443 56666666665
Done!