Query 043908
Match_columns 462
No_of_seqs 401 out of 2981
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 2.5E-18 8.7E-23 182.9 14.3 147 38-195 231-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.5 1.1E-14 3.8E-19 167.8 11.3 145 37-194 222-452 (1249)
3 1vt4_I APAF-1 related killer D 99.4 4.1E-13 1.4E-17 148.5 11.0 126 49-187 243-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.2 3.1E-11 1.1E-15 129.0 10.7 64 49-123 235-301 (591)
5 4fcg_A Uncharacterized protein 99.1 2.6E-10 8.8E-15 113.0 11.0 121 210-334 118-271 (328)
6 4fcg_A Uncharacterized protein 99.0 7.3E-10 2.5E-14 109.7 10.1 126 209-336 140-297 (328)
7 1ogq_A PGIP-2, polygalacturona 98.6 4.1E-08 1.4E-12 96.3 6.6 86 210-297 67-166 (313)
8 3rgz_A Protein brassinosteroid 98.6 8.1E-08 2.8E-12 105.8 8.7 125 210-335 481-699 (768)
9 3e6j_A Variable lymphocyte rec 98.5 1E-06 3.4E-11 82.3 12.7 85 209-297 32-128 (229)
10 4ezg_A Putative uncharacterize 98.5 1.8E-07 6.1E-12 85.2 6.8 116 214-333 39-175 (197)
11 4eco_A Uncharacterized protein 98.5 4.1E-07 1.4E-11 98.0 10.4 121 211-334 239-394 (636)
12 3zyi_A Leucine-rich repeat-con 98.4 1E-06 3.4E-11 90.7 12.6 34 219-252 75-108 (452)
13 2o6q_A Variable lymphocyte rec 98.4 1.4E-06 4.8E-11 83.2 12.6 120 210-334 51-198 (270)
14 3zyj_A Leucine-rich repeat-con 98.4 1.2E-06 4.1E-11 89.8 13.0 39 213-252 82-121 (440)
15 3m19_A Variable lymphocyte rec 98.4 1.6E-06 5.3E-11 82.0 12.6 17 316-333 155-171 (251)
16 1ozn_A Reticulon 4 receptor; N 98.4 1.1E-06 3.6E-11 84.5 11.6 81 212-292 73-166 (285)
17 1ogq_A PGIP-2, polygalacturona 98.4 1.8E-07 6.2E-12 91.6 6.0 116 210-327 92-232 (313)
18 3rgz_A Protein brassinosteroid 98.4 3.2E-07 1.1E-11 101.0 8.4 123 210-334 409-556 (768)
19 4ecn_A Leucine-rich repeat pro 98.4 1E-06 3.5E-11 98.2 11.0 120 211-334 481-636 (876)
20 3rfs_A Internalin B, repeat mo 98.4 3E-06 1E-10 81.1 12.8 114 214-333 58-197 (272)
21 1wwl_A Monocyte differentiatio 98.3 1.1E-06 3.6E-11 86.0 9.3 121 210-334 135-291 (312)
22 1h6t_A Internalin B; cell adhe 98.3 3.5E-06 1.2E-10 81.6 12.7 116 214-334 63-195 (291)
23 1ozn_A Reticulon 4 receptor; N 98.3 4.8E-06 1.7E-10 79.9 13.5 111 213-327 50-188 (285)
24 3g06_A SSPH2 (leucine-rich rep 98.3 6.4E-06 2.2E-10 88.4 15.7 47 284-334 226-278 (622)
25 2xwt_C Thyrotropin receptor; s 98.3 1.5E-06 5.3E-11 81.2 9.6 116 214-334 50-197 (239)
26 3m19_A Variable lymphocyte rec 98.3 4.2E-06 1.4E-10 78.9 12.7 111 212-326 52-189 (251)
27 1h6u_A Internalin H; cell adhe 98.3 2.6E-06 8.8E-11 83.2 11.3 37 214-252 58-94 (308)
28 3rfs_A Internalin B, repeat mo 98.3 3.5E-06 1.2E-10 80.5 11.9 111 213-327 79-216 (272)
29 2z66_A Variable lymphocyte rec 98.3 2.1E-06 7.3E-11 83.2 10.2 113 211-327 93-234 (306)
30 2v9t_B SLIT homolog 2 protein 98.3 6.2E-06 2.1E-10 76.4 12.8 82 209-293 24-118 (220)
31 2o6q_A Variable lymphocyte rec 98.3 6.1E-06 2.1E-10 78.7 13.1 114 210-327 75-216 (270)
32 2xwt_C Thyrotropin receptor; s 98.3 1.6E-06 5.6E-11 81.0 8.8 123 210-335 70-223 (239)
33 1m9s_A Internalin B; cell inva 98.3 3.2E-06 1.1E-10 90.5 12.0 76 214-292 60-144 (605)
34 2z81_A CD282 antigen, TOLL-lik 98.3 2.8E-06 9.4E-11 89.2 10.6 59 210-268 324-398 (549)
35 1jl5_A Outer protein YOPM; leu 98.3 3.9E-08 1.4E-12 101.7 -3.6 120 209-334 24-170 (454)
36 1p9a_G Platelet glycoprotein I 98.2 5.2E-06 1.8E-10 80.4 11.5 118 212-335 48-190 (290)
37 3v47_A TOLL-like receptor 5B a 98.2 4.6E-06 1.6E-10 85.4 11.5 82 212-293 72-168 (455)
38 2z7x_B TOLL-like receptor 1, v 98.2 3.6E-06 1.2E-10 87.8 10.8 117 216-335 321-462 (520)
39 2id5_A Lingo-1, leucine rich r 98.2 9.8E-06 3.4E-10 83.6 13.8 56 212-268 73-139 (477)
40 3zyj_A Leucine-rich repeat-con 98.2 4.5E-06 1.5E-10 85.5 10.9 111 212-326 105-241 (440)
41 3zyi_A Leucine-rich repeat-con 98.2 6.3E-06 2.2E-10 84.7 11.9 111 213-327 117-253 (452)
42 1m9s_A Internalin B; cell inva 98.2 4.5E-06 1.5E-10 89.4 11.0 113 210-327 79-208 (605)
43 3vq2_A TLR4, TOLL-like recepto 98.2 2.3E-06 7.7E-11 91.1 8.6 123 210-335 390-539 (606)
44 1h6t_A Internalin B; cell adhe 98.2 5.2E-06 1.8E-10 80.4 10.4 113 210-327 82-211 (291)
45 2id5_A Lingo-1, leucine rich r 98.2 4.7E-06 1.6E-10 86.0 10.7 84 210-293 94-190 (477)
46 2z81_A CD282 antigen, TOLL-lik 98.2 4.9E-06 1.7E-10 87.3 10.7 79 212-290 43-134 (549)
47 1p9a_G Platelet glycoprotein I 98.2 9.5E-06 3.2E-10 78.5 11.8 107 216-326 74-205 (290)
48 2o6s_A Variable lymphocyte rec 98.2 2E-05 7E-10 71.8 13.3 80 210-292 21-113 (208)
49 3g06_A SSPH2 (leucine-rich rep 98.2 9.4E-06 3.2E-10 87.2 12.5 99 217-326 79-191 (622)
50 4glp_A Monocyte differentiatio 98.2 3.1E-06 1.1E-10 82.5 8.0 116 216-334 142-289 (310)
51 1xeu_A Internalin C; cellular 98.2 4.6E-06 1.6E-10 79.6 9.0 53 214-268 36-96 (263)
52 4eco_A Uncharacterized protein 98.2 8E-07 2.7E-11 95.8 4.0 121 210-334 197-370 (636)
53 2z62_A TOLL-like receptor 4, v 98.2 7.3E-06 2.5E-10 78.2 10.3 115 214-334 71-217 (276)
54 1h6u_A Internalin H; cell adhe 98.2 7.4E-06 2.5E-10 79.9 10.5 117 210-333 77-211 (308)
55 2ell_A Acidic leucine-rich nuc 98.1 3.8E-06 1.3E-10 74.0 7.4 57 210-268 40-106 (168)
56 2je0_A Acidic leucine-rich nuc 98.1 2.3E-06 8E-11 73.8 5.9 33 220-252 18-51 (149)
57 3oja_B Anopheles plasmodium-re 98.1 9.6E-06 3.3E-10 86.5 11.8 53 215-268 119-182 (597)
58 2wfh_A SLIT homolog 2 protein 98.1 1.2E-05 4.2E-10 72.9 10.8 81 209-292 23-115 (193)
59 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.2E-05 4E-10 85.0 11.8 117 216-335 350-491 (562)
60 2v70_A SLIT-2, SLIT homolog 2 98.1 1.4E-05 4.9E-10 73.9 11.0 71 221-292 34-118 (220)
61 3vq2_A TLR4, TOLL-like recepto 98.1 3.8E-06 1.3E-10 89.3 8.0 121 212-334 369-515 (606)
62 4ezg_A Putative uncharacterize 98.1 8.7E-06 3E-10 73.8 9.2 111 210-326 58-191 (197)
63 1wwl_A Monocyte differentiatio 98.1 6.1E-06 2.1E-10 80.5 8.7 124 210-335 110-271 (312)
64 4b8c_D Glucose-repressible alc 98.1 1.6E-06 5.5E-11 94.9 4.9 111 210-326 238-369 (727)
65 4g8a_A TOLL-like receptor 4; l 98.1 1.1E-05 3.7E-10 85.6 10.9 32 220-252 53-85 (635)
66 3o6n_A APL1; leucine-rich repe 98.1 1.8E-05 6.2E-10 79.4 11.9 38 214-252 112-150 (390)
67 2ft3_A Biglycan; proteoglycan, 98.1 1.4E-05 5E-10 78.3 10.9 113 212-326 71-203 (332)
68 2z80_A TOLL-like receptor 2, v 98.1 1.8E-05 6.2E-10 78.4 11.7 38 214-252 71-109 (353)
69 4ay9_X Follicle-stimulating ho 98.1 1E-05 3.6E-10 80.2 10.0 122 210-334 44-219 (350)
70 2ell_A Acidic leucine-rich nuc 98.1 6.1E-06 2.1E-10 72.6 7.4 75 218-293 23-109 (168)
71 1xku_A Decorin; proteoglycan, 98.1 1.2E-05 4.2E-10 78.7 10.4 118 213-332 70-207 (330)
72 1dce_A Protein (RAB geranylger 98.1 6.3E-06 2.2E-10 87.6 8.3 82 209-293 454-547 (567)
73 1jl5_A Outer protein YOPM; leu 98.1 2E-05 6.7E-10 81.4 11.8 40 284-326 242-287 (454)
74 1w8a_A SLIT protein; signaling 98.1 1.3E-05 4.3E-10 72.6 9.2 82 209-293 21-116 (192)
75 3bz5_A Internalin-J, INLJ; leu 98.1 2.7E-05 9.3E-10 80.4 12.9 73 214-292 59-140 (457)
76 2v9t_B SLIT homolog 2 protein 98.1 1.7E-05 5.8E-10 73.4 10.2 100 213-326 50-162 (220)
77 2z7x_B TOLL-like receptor 1, v 98.0 9.3E-06 3.2E-10 84.7 9.1 113 210-327 339-479 (520)
78 4fmz_A Internalin; leucine ric 98.0 1.2E-05 4.2E-10 79.1 9.2 116 215-334 195-328 (347)
79 3j0a_A TOLL-like receptor 5; m 98.0 1.4E-05 4.6E-10 88.9 10.5 57 212-268 41-108 (844)
80 4glp_A Monocyte differentiatio 98.0 8.1E-06 2.8E-10 79.5 7.7 112 212-327 162-305 (310)
81 3bz5_A Internalin-J, INLJ; leu 98.0 1.6E-05 5.5E-10 82.1 10.1 113 215-333 166-303 (457)
82 3oja_B Anopheles plasmodium-re 98.0 1.7E-05 5.7E-10 84.6 10.5 80 213-293 93-185 (597)
83 2z62_A TOLL-like receptor 4, v 98.0 2.2E-05 7.6E-10 74.8 10.3 54 214-268 47-111 (276)
84 3t6q_A CD180 antigen; protein- 98.0 1.9E-05 6.4E-10 84.0 10.8 80 213-293 272-364 (606)
85 1xeu_A Internalin C; cellular 98.0 2.5E-05 8.5E-10 74.4 10.4 80 210-293 55-142 (263)
86 3o6n_A APL1; leucine-rich repe 98.0 2.5E-05 8.5E-10 78.4 10.9 78 214-292 88-178 (390)
87 3cvr_A Invasion plasmid antige 98.0 2.9E-05 9.9E-10 82.5 11.7 31 218-252 99-129 (571)
88 3oja_A Leucine-rich immune mol 98.0 1E-05 3.4E-10 84.3 7.9 77 212-293 51-134 (487)
89 4b8c_D Glucose-repressible alc 98.0 7.5E-06 2.6E-10 89.6 7.2 86 211-300 216-313 (727)
90 2je0_A Acidic leucine-rich nuc 98.0 9.3E-06 3.2E-10 69.9 6.3 81 210-292 33-126 (149)
91 2wfh_A SLIT homolog 2 protein 98.0 2E-05 6.9E-10 71.4 8.8 84 209-293 44-140 (193)
92 2o6s_A Variable lymphocyte rec 98.0 1.9E-05 6.6E-10 72.0 8.7 82 210-292 42-137 (208)
93 1w8a_A SLIT protein; signaling 98.0 2.2E-05 7.5E-10 71.0 8.9 83 210-293 43-140 (192)
94 3e6j_A Variable lymphocyte rec 98.0 3.3E-05 1.1E-09 71.8 10.3 99 212-326 57-169 (229)
95 2z80_A TOLL-like receptor 2, v 98.0 2.6E-05 9E-10 77.2 10.2 80 213-293 94-188 (353)
96 1a9n_A U2A', U2A'; complex (nu 98.0 1.1E-05 3.6E-10 71.9 6.6 105 214-333 14-129 (176)
97 3t6q_A CD180 antigen; protein- 98.0 2.4E-05 8.3E-10 83.1 10.6 42 212-253 50-91 (606)
98 1ziw_A TOLL-like receptor 3; i 98.0 2.6E-05 9E-10 84.1 11.0 119 212-334 447-601 (680)
99 3j0a_A TOLL-like receptor 5; m 98.0 2.5E-05 8.4E-10 86.9 11.0 114 212-326 66-214 (844)
100 2o6r_A Variable lymphocyte rec 97.9 7.5E-05 2.6E-09 66.2 11.9 101 210-327 21-135 (177)
101 2z66_A Variable lymphocyte rec 97.9 2.5E-05 8.7E-10 75.5 9.5 83 210-293 42-140 (306)
102 4ecn_A Leucine-rich repeat pro 97.9 1.1E-05 3.9E-10 89.7 7.9 37 214-252 568-604 (876)
103 2xot_A Amphoterin-induced prot 97.9 2.8E-05 9.6E-10 77.5 9.9 110 220-333 40-179 (361)
104 2r9u_A Variable lymphocyte rec 97.9 3.5E-05 1.2E-09 68.7 9.4 42 209-253 25-67 (174)
105 3v47_A TOLL-like receptor 5B a 97.9 3.2E-05 1.1E-09 79.0 10.2 75 219-293 275-361 (455)
106 3cvr_A Invasion plasmid antige 97.9 4.5E-05 1.6E-09 81.0 11.4 111 210-334 73-197 (571)
107 3g39_A Variable lymphocyte rec 97.9 4.4E-05 1.5E-09 67.6 9.6 57 209-268 22-89 (170)
108 4fmz_A Internalin; leucine ric 97.9 2.6E-05 8.8E-10 76.8 8.9 116 210-333 58-193 (347)
109 1o6v_A Internalin A; bacterial 97.9 2.7E-05 9.3E-10 80.2 9.2 74 215-292 64-147 (466)
110 2ast_B S-phase kinase-associat 97.9 3.7E-06 1.3E-10 82.4 2.5 117 211-327 110-258 (336)
111 3o53_A Protein LRIM1, AGAP0063 97.9 1.8E-05 6.2E-10 77.3 7.4 18 316-334 214-231 (317)
112 1o6v_A Internalin A; bacterial 97.9 7.3E-05 2.5E-09 77.0 12.0 52 215-268 217-276 (466)
113 1xku_A Decorin; proteoglycan, 97.9 6.5E-05 2.2E-09 73.5 11.1 115 212-333 93-232 (330)
114 2ifg_A High affinity nerve gro 97.8 4.3E-05 1.5E-09 75.4 9.4 83 209-293 22-117 (347)
115 3oja_A Leucine-rich immune mol 97.8 2.1E-05 7.3E-10 81.8 7.2 110 211-327 22-155 (487)
116 2z63_A TOLL-like receptor 4, v 97.8 5.8E-05 2E-09 79.3 10.1 39 214-253 47-86 (570)
117 4ay9_X Follicle-stimulating ho 97.8 7.4E-05 2.5E-09 74.0 10.2 124 212-340 97-247 (350)
118 4g8a_A TOLL-like receptor 4; l 97.8 6E-05 2E-09 79.9 10.1 41 212-252 413-454 (635)
119 2z63_A TOLL-like receptor 4, v 97.8 6.8E-05 2.3E-09 78.7 10.5 114 209-327 20-160 (570)
120 1ziw_A TOLL-like receptor 3; i 97.8 8.4E-05 2.9E-09 80.1 11.1 115 210-326 39-181 (680)
121 2o6r_A Variable lymphocyte rec 97.8 9.2E-05 3.2E-09 65.6 9.3 83 210-293 42-138 (177)
122 2v70_A SLIT-2, SLIT homolog 2 97.7 5.7E-05 2E-09 69.8 8.0 100 213-327 51-164 (220)
123 2ast_B S-phase kinase-associat 97.7 6.1E-06 2.1E-10 80.8 1.2 121 210-330 84-236 (336)
124 3o53_A Protein LRIM1, AGAP0063 97.7 4.1E-05 1.4E-09 74.7 6.8 116 212-335 51-187 (317)
125 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 0.00012 4.2E-09 77.1 10.6 78 210-293 45-135 (562)
126 1dce_A Protein (RAB geranylger 97.7 9.7E-05 3.3E-09 78.4 9.0 95 220-333 442-549 (567)
127 2ft3_A Biglycan; proteoglycan, 97.6 0.00017 5.8E-09 70.6 9.7 54 212-268 95-158 (332)
128 2xot_A Amphoterin-induced prot 97.6 0.00014 4.8E-09 72.3 8.8 81 214-297 58-152 (361)
129 2r9u_A Variable lymphocyte rec 97.6 0.00036 1.2E-08 62.0 10.3 89 221-326 14-115 (174)
130 1ds9_A Outer arm dynein; leuci 97.5 3.3E-06 1.1E-10 76.8 -3.7 103 209-327 38-151 (198)
131 1a9n_A U2A', U2A'; complex (nu 97.5 0.00013 4.4E-09 64.7 6.5 83 210-297 33-129 (176)
132 3g39_A Variable lymphocyte rec 97.5 0.00061 2.1E-08 60.1 10.5 89 221-326 11-112 (170)
133 2ifg_A High affinity nerve gro 97.4 0.00033 1.1E-08 68.9 9.0 72 223-297 12-96 (347)
134 3e4g_A ATP synthase subunit S, 97.4 0.00033 1.1E-08 62.6 7.8 59 209-268 51-125 (176)
135 2ca6_A RAN GTPase-activating p 97.2 0.0001 3.5E-09 73.8 1.8 54 215-268 56-133 (386)
136 2ca6_A RAN GTPase-activating p 97.2 0.00016 5.6E-09 72.3 3.2 39 216-254 91-133 (386)
137 3goz_A Leucine-rich repeat-con 96.7 0.00043 1.5E-08 68.7 1.3 114 213-327 44-207 (362)
138 1ds9_A Outer arm dynein; leuci 96.7 3.2E-05 1.1E-09 70.1 -6.5 83 209-293 61-154 (198)
139 3goz_A Leucine-rich repeat-con 96.6 0.0009 3.1E-08 66.4 3.1 118 212-332 68-240 (362)
140 1z7x_W Ribonuclease inhibitor; 96.1 0.0021 7.2E-08 65.4 2.7 41 212-253 220-266 (461)
141 2p1m_B Transport inhibitor res 96.0 0.00057 1.9E-08 72.0 -2.4 53 216-268 102-167 (594)
142 3e4g_A ATP synthase subunit S, 95.9 0.0039 1.4E-07 55.5 3.0 58 214-271 80-153 (176)
143 3ogk_B Coronatine-insensitive 95.7 0.0016 5.6E-08 68.5 -0.3 52 214-266 337-412 (592)
144 3ogk_B Coronatine-insensitive 95.5 0.0053 1.8E-07 64.5 2.6 36 215-251 216-251 (592)
145 1z7x_W Ribonuclease inhibitor; 95.2 0.0059 2E-07 62.0 1.8 50 218-268 198-267 (461)
146 1njg_A DNA polymerase III subu 94.9 0.024 8.2E-07 51.4 5.0 72 49-123 125-200 (250)
147 2p1m_B Transport inhibitor res 94.9 0.0048 1.6E-07 64.8 0.1 38 217-254 128-167 (594)
148 1w5s_A Origin recognition comp 94.6 0.15 5.2E-06 50.6 10.5 70 49-120 137-227 (412)
149 3sb4_A Hypothetical leucine ri 94.3 0.14 4.8E-06 49.6 9.1 33 218-252 100-133 (329)
150 3rw6_A Nuclear RNA export fact 93.9 0.032 1.1E-06 53.1 3.5 37 216-253 167-206 (267)
151 3sb4_A Hypothetical leucine ri 93.7 0.16 5.3E-06 49.2 8.1 35 217-252 224-259 (329)
152 4fdw_A Leucine rich hypothetic 93.3 0.37 1.3E-05 48.3 10.3 38 213-251 174-211 (401)
153 2ra8_A Uncharacterized protein 92.9 0.17 5.9E-06 50.1 7.0 54 210-266 163-228 (362)
154 2fna_A Conserved hypothetical 92.7 0.24 8.2E-06 47.9 7.7 82 38-120 124-221 (357)
155 3un9_A NLR family member X1; l 92.1 0.096 3.3E-06 52.1 4.1 13 106-118 44-56 (372)
156 2ra8_A Uncharacterized protein 91.6 0.3 1E-05 48.4 7.0 74 212-287 132-227 (362)
157 2qby_B CDC6 homolog 3, cell di 90.4 3.1 0.00011 40.5 13.1 66 50-121 133-210 (384)
158 2chg_A Replication factor C sm 90.1 0.22 7.4E-06 44.3 4.0 72 49-122 101-175 (226)
159 2qen_A Walker-type ATPase; unk 89.1 0.66 2.3E-05 44.6 6.9 70 50-120 128-215 (350)
160 2v1u_A Cell division control p 87.7 1.4 4.7E-05 43.0 8.3 70 49-121 129-214 (387)
161 2qby_A CDC6 homolog 1, cell di 87.3 0.81 2.8E-05 44.6 6.3 73 49-121 127-210 (386)
162 1io0_A Tropomodulin; LRR prote 86.1 0.51 1.7E-05 41.7 3.7 55 214-268 31-104 (185)
163 1sxj_B Activator 1 37 kDa subu 83.7 0.65 2.2E-05 44.2 3.5 72 49-122 106-180 (323)
164 3un9_A NLR family member X1; l 82.8 0.49 1.7E-05 46.9 2.2 74 218-293 154-253 (372)
165 4fdw_A Leucine rich hypothetic 81.3 4 0.00014 40.6 8.4 47 220-268 136-191 (401)
166 3rw6_A Nuclear RNA export fact 80.7 0.99 3.4E-05 42.6 3.4 42 209-252 186-229 (267)
167 1io0_A Tropomodulin; LRR prote 78.7 1.4 4.9E-05 38.6 3.6 36 217-253 63-103 (185)
168 3rfe_A Platelet glycoprotein I 78.5 1.8 6.1E-05 35.9 4.0 33 220-253 32-65 (130)
169 3h4m_A Proteasome-activating n 78.5 4.2 0.00014 37.8 7.1 87 49-137 109-218 (285)
170 1iqp_A RFCS; clamp loader, ext 78.0 2.9 0.0001 39.6 5.9 73 49-123 109-184 (327)
171 1fnn_A CDC6P, cell division co 76.9 5.9 0.0002 38.4 7.9 70 49-121 124-206 (389)
172 4fs7_A Uncharacterized protein 76.5 8.1 0.00028 37.9 8.9 31 301-332 338-371 (394)
173 4fs7_A Uncharacterized protein 76.1 6.6 0.00023 38.6 8.1 35 214-250 157-192 (394)
174 2z4s_A Chromosomal replication 66.7 12 0.0004 37.8 7.5 85 50-136 194-293 (440)
175 3rfe_A Platelet glycoprotein I 66.3 8.8 0.0003 31.5 5.4 29 222-253 11-41 (130)
176 2chq_A Replication factor C sm 65.9 17 0.00059 33.9 8.2 73 49-123 101-176 (319)
177 4h09_A Hypothetical leucine ri 64.2 26 0.00088 33.8 9.3 30 302-332 306-338 (379)
178 4gt6_A Cell surface protein; l 60.2 6.5 0.00022 38.6 4.0 10 302-311 330-339 (394)
179 1jr3_A DNA polymerase III subu 58.4 8.6 0.00029 37.1 4.6 71 49-121 118-191 (373)
180 4h09_A Hypothetical leucine ri 55.4 9.1 0.00031 37.1 4.2 36 215-252 259-295 (379)
181 3eie_A Vacuolar protein sortin 54.9 55 0.0019 30.9 9.7 70 49-123 109-199 (322)
182 1d2n_A N-ethylmaleimide-sensit 52.0 30 0.001 31.7 7.0 71 49-119 123-210 (272)
183 2qp9_X Vacuolar protein sortin 51.7 67 0.0023 30.9 9.8 80 38-123 132-232 (355)
184 3syl_A Protein CBBX; photosynt 51.3 13 0.00043 34.9 4.3 69 50-123 130-219 (309)
185 3cf0_A Transitional endoplasmi 49.4 1.6E+02 0.0056 27.2 12.5 87 30-121 89-199 (301)
186 3bos_A Putative DNA replicatio 47.1 5.3 0.00018 35.6 0.8 71 50-122 104-188 (242)
187 1l8q_A Chromosomal replication 45.7 29 0.001 32.7 6.0 71 50-123 98-181 (324)
188 1xwi_A SKD1 protein; VPS4B, AA 45.4 1.9E+02 0.0064 27.2 11.8 80 37-122 93-193 (322)
189 1sxj_E Activator 1 40 kDa subu 43.9 32 0.0011 32.8 6.0 72 50-122 134-207 (354)
190 1a5t_A Delta prime, HOLB; zinc 43.5 29 0.00099 33.2 5.6 72 49-121 107-180 (334)
191 2qz4_A Paraplegin; AAA+, SPG7, 42.5 73 0.0025 28.5 8.0 81 40-123 89-192 (262)
192 1jbk_A CLPB protein; beta barr 40.7 11 0.00037 31.9 1.8 75 41-117 106-194 (195)
193 3vfd_A Spastin; ATPase, microt 35.8 1.3E+02 0.0043 29.2 9.0 73 49-123 206-297 (389)
194 2zan_A Vacuolar protein sortin 35.7 1.5E+02 0.0052 29.4 9.7 82 38-122 216-315 (444)
195 1pgv_A TMD-1, tropomodulin TMD 35.6 24 0.00083 31.3 3.3 38 217-254 39-81 (197)
196 3d8b_A Fidgetin-like protein 1 35.2 90 0.0031 30.0 7.7 72 49-122 175-265 (357)
197 1jr3_D DNA polymerase III, del 31.0 2.1E+02 0.0071 26.9 9.5 71 49-121 75-155 (343)
198 1hqc_A RUVB; extended AAA-ATPa 26.6 60 0.002 30.2 4.6 73 49-123 89-183 (324)
199 1sxj_A Activator 1 95 kDa subu 26.5 1E+02 0.0034 31.4 6.6 72 49-123 147-224 (516)
200 2gno_A DNA polymerase III, gam 23.8 51 0.0017 31.2 3.5 69 49-121 81-152 (305)
201 3hu3_A Transitional endoplasmi 22.2 2.5E+02 0.0085 28.3 8.5 93 40-137 288-402 (489)
202 3u61_B DNA polymerase accessor 21.4 81 0.0028 29.5 4.4 63 50-117 105-174 (324)
203 3uk6_A RUVB-like 2; hexameric 21.0 5.1E+02 0.017 24.1 10.9 66 52-123 191-274 (368)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.76 E-value=2.5e-18 Score=182.90 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCC-CcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcC-CCCcceEecCCCCHHHHHH
Q 043908 38 LARIIEAAAAATG-PPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVAHE-VDEEHILDLDVLNNDEALQ 115 (462)
Q Consensus 38 l~~i~~~~~~~~K-r~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~-~~~~~~y~v~~L~~~es~~ 115 (462)
+...++..+. +| ||||||||||+.++ + .+.. .+|||||||||++.|+..++ ... +|+|++|+.+|||+
T Consensus 231 l~~~l~~~L~-~~kr~LlVLDdv~~~~~-~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~--~~~l~~L~~~ea~~ 300 (549)
T 2a5y_B 231 LKRMICNALI-DRPNTLFVFDDVVQEET-I-RWAQ-----ELRLRCLVTTRDVEISNAASQTCE--FIEVTSLEIDECYD 300 (549)
T ss_dssp HHHHHHHHHT-TSTTEEEEEEEECCHHH-H-HHHH-----HTTCEEEEEESBGGGGGGCCSCEE--EEECCCCCHHHHHH
T ss_pred HHHHHHHHHc-CCCcEEEEEECCCCchh-h-cccc-----cCCCEEEEEcCCHHHHHHcCCCCe--EEECCCCCHHHHHH
Confidence 4555555555 64 99999999999886 4 2221 27999999999999999886 334 89999999999999
Q ss_pred HHHHhhhCCCCCCccHHHHHHHHh--------------------------------------------------------
Q 043908 116 FFSVKAFKSHRPVGDYVELSERVL-------------------------------------------------------- 139 (462)
Q Consensus 116 LF~~~af~~~~~~~~~~~l~~~Iv-------------------------------------------------------- 139 (462)
||.++||+... .+++.+++++|+
T Consensus 301 Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk 379 (549)
T 2a5y_B 301 FLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQ 379 (549)
T ss_dssp HHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHH
T ss_pred HHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHH
Confidence 99999997532 356777777777
Q ss_pred -------------------cChhH--HHHHHHhC--CCCCccc-----------HHHHhccCceeEeCC---CeEeecHH
Q 043908 140 -------------------KDRDY--VAKILEGC--GFSPVIG-----------IEVLIEKSRLTVDGR---NKLQMHDL 182 (462)
Q Consensus 140 -------------------~~~~~--l~~il~~~--g~~~~~~-----------i~~L~~~sLi~~~~~---~~~~MHdL 182 (462)
+.+++ -+.+|.++ ||+...+ +++|+++||++.... ++++|||+
T Consensus 380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdl 459 (549)
T 2a5y_B 380 RCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHI 459 (549)
T ss_dssp HHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHH
T ss_pred HHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChH
Confidence 00000 04566666 6665332 889999999998643 46999999
Q ss_pred HHHHHHHHhccCC
Q 043908 183 LQELGQLIVTRQF 195 (462)
Q Consensus 183 l~~~~~~i~~~e~ 195 (462)
+|++|++++.+++
T Consensus 460 v~~~a~~~~~~~~ 472 (549)
T 2a5y_B 460 IHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.54 E-value=1.1e-14 Score=167.84 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=101.1
Q ss_pred HHHHHHHHHHh-cCCCcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHH-cCCCCcceEecCC-CCHHHH
Q 043908 37 NLARIIEAAAA-ATGPPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVA-HEVDEEHILDLDV-LNNDEA 113 (462)
Q Consensus 37 ~l~~i~~~~~~-~~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~-~~~~~~~~y~v~~-L~~~es 113 (462)
.+...++..+. ++|||||||||||+..+ |+.+ ++|||||||||++.|+.. ++... .|+++. |+.+||
T Consensus 222 ~~~~~l~~~l~~~~~~~LlvlDd~~~~~~-~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~--~~~~~~~l~~~~a 291 (1249)
T 3sfz_A 222 EAKDRLRVLMLRKHPRSLLILDDVWDPWV-LKAF-------DNQCQILLTTRDKSVTDSVMGPKH--VVPVESGLGREKG 291 (1249)
T ss_dssp HHHHHHHHHTSSSSCSCEEEEESCCCHHH-HTTT-------CSSCEEEEEESSTTTTTTCCSCBC--CEECCSSCCHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecCCCHHH-HHhh-------cCCCEEEEEcCCHHHHHhhcCCce--EEEecCCCCHHHH
Confidence 33444444443 13499999999999887 6654 679999999999999965 45545 899996 999999
Q ss_pred HHHHHHhhhCCCCCCccHHHHHHHHh--------------------------------------------cChh------
Q 043908 114 LQFFSVKAFKSHRPVGDYVELSERVL--------------------------------------------KDRD------ 143 (462)
Q Consensus 114 ~~LF~~~af~~~~~~~~~~~l~~~Iv--------------------------------------------~~~~------ 143 (462)
|+||...++... +++.+++++|+ ...+
T Consensus 292 ~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 368 (1249)
T 3sfz_A 292 LEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAM 368 (1249)
T ss_dssp HHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHH
T ss_pred HHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHH
Confidence 999999986432 22333344444 0001
Q ss_pred ---------HHHHHHHhCCCCCcc---------------------cHHHHhccCceeEeCCCe---EeecHHHHHHHHHH
Q 043908 144 ---------YVAKILEGCGFSPVI---------------------GIEVLIEKSRLTVDGRNK---LQMHDLLQELGQLI 190 (462)
Q Consensus 144 ---------~l~~il~~~g~~~~~---------------------~i~~L~~~sLi~~~~~~~---~~MHdLl~~~~~~i 190 (462)
...+++..++.+++. .+++|++++|++...++. ++|||++|+++++.
T Consensus 369 ~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhh
Confidence 122334445544421 278899999999886664 99999999999988
Q ss_pred hccC
Q 043908 191 VTRQ 194 (462)
Q Consensus 191 ~~~e 194 (462)
..++
T Consensus 449 ~~~~ 452 (1249)
T 3sfz_A 449 NRSQ 452 (1249)
T ss_dssp TGGG
T ss_pred hhHH
Confidence 6644
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.41 E-value=4.1e-13 Score=148.49 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=87.8
Q ss_pred CCCcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcCCCCcceEecC------CCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVAHEVDEEHILDLD------VLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~~~~~~~y~v~------~L~~~es~~LF~~~af 122 (462)
+||+||||||||+.++ |+.+ ++|||||||||++.++..++... +|+|+ +|+.+|||+||+++ |
T Consensus 243 ~KRvLLVLDDVwd~eq-Le~f-------~pGSRILVTTRd~~Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~-~ 311 (1221)
T 1vt4_I 243 YENCLLVLLNVQNAKA-WNAF-------NLSCKILLTTRFKQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKY-L 311 (1221)
T ss_dssp TSSCEEEEESCCCHHH-HHHH-------HSSCCEEEECSCSHHHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHH-H
T ss_pred CCCEEEEEeCcChHHH-HHhh-------CCCeEEEEeccChHHHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHH-c
Confidence 7999999999999888 8875 27999999999999997655444 67777 99999999999987 4
Q ss_pred CCCCCCccHH-------HHHHHHh--------------------------------cChhHHHHHHHhCCCCCc------
Q 043908 123 KSHRPVGDYV-------ELSERVL--------------------------------KDRDYVAKILEGCGFSPV------ 157 (462)
Q Consensus 123 ~~~~~~~~~~-------~l~~~Iv--------------------------------~~~~~l~~il~~~g~~~~------ 157 (462)
+.. ..+.. ++|-+++ .+.+.+.+++..++.+++
T Consensus 312 g~~--~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~ 389 (1221)
T 1vt4_I 312 DCR--PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389 (1221)
T ss_dssp CCC--TTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEH
T ss_pred CCC--HHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCH
Confidence 432 11111 1111111 111111444444444432
Q ss_pred ----------------ccHHHHhccCceeEeC-CCeEeecHHHHHHH
Q 043908 158 ----------------IGIEVLIEKSRLTVDG-RNKLQMHDLLQELG 187 (462)
Q Consensus 158 ----------------~~i~~L~~~sLi~~~~-~~~~~MHdLl~~~~ 187 (462)
..+++|+++||++.+. .++++||||+++++
T Consensus 390 elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 2377899999999863 46799999998865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.21 E-value=3.1e-11 Score=129.03 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCCcEEEEeCCCCcchhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcCCCCcceEec---CCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILTLFTTLKVAPIMAAAAAGILITTRDRQLLVAHEVDEEHILDL---DVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~~~~~~~y~v---~~L~~~es~~LF~~~af~ 123 (462)
.+++||||||||+..+ ++. +++|++||||||++.++..++. . .|++ ++|+.+||++||...++.
T Consensus 235 ~~~~LLVLDdv~~~~~-l~~-------l~~~~~ilvTsR~~~~~~~~~~-~--~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 235 HPRSLLILDDVWDSWV-LKA-------FDSQCQILLTTRDKSVTDSVMG-P--KYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp CTTCEEEEEEECCHHH-HHT-------TCSSCEEEEEESCGGGGTTCCS-C--EEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCHHH-HHH-------hcCCCeEEEECCCcHHHHhcCC-C--ceEeecCCCCCHHHHHHHHHHHhCC
Confidence 3799999999998776 553 3679999999999999877653 3 6666 489999999999999875
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=2.6e-10 Score=113.02 Aligned_cols=121 Identities=30% Similarity=0.503 Sum_probs=77.6
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCC-------------------CCCccEEEeecCC-C
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSK-------------------LKNLKALSFRGCN-G 269 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~-------------------L~~L~~L~l~~~~-~ 269 (462)
.+|..++++++|++|+|++| .+..+|..++++++|++|++++|.. +++|++|++++|. .
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 56777777777777777765 4557777777777777777776531 5567777777776 2
Q ss_pred CCCCCcccccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCCCC---CCccEEEeeCCCCCeeecc
Q 043908 270 PPSSASCYLLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQLP---PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 270 ~~~~~~~~~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~l~---~sL~~L~~~~C~sL~~lp~ 334 (462)
..|.. ...++.+. |+|++|.++ .+| .++ ++++|...+.+|... ++|++|++++|..++.+|.
T Consensus 197 ~lp~~-l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 197 SLPAS-IANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCCGG-GGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred cchHh-hcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 22222 33444444 777777777 344 333 666777777776422 6777777777777777764
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.02 E-value=7.3e-10 Score=109.71 Aligned_cols=126 Identities=29% Similarity=0.468 Sum_probs=103.8
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCC---------CCCcCEEeecCCC---------CCCCccEEEeecCC-C
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISS---------LKSLRTLELSGCS---------KLKNLKALSFRGCN-G 269 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~---------L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~ 269 (462)
..+|..++++++|++|++++|+.++.+|..++. +++|++|++++|. ++++|++|++++|. .
T Consensus 140 ~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence 367999999999999999999999999998875 9999999998864 45589999999998 2
Q ss_pred CCCCCcccccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCCC-C--CCccEEEeeCCCCCeeecccc
Q 043908 270 PPSSASCYLLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQL-P--PNVTEVRVNGCASLVTLLGAL 336 (462)
Q Consensus 270 ~~~~~~~~~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~l-~--~sL~~L~~~~C~sL~~lp~~~ 336 (462)
..|.. ...+|.+. |+|++|++.+ .+| .++ ++++|..++.+|.. . ++|++|++++|..++.+|...
T Consensus 220 ~l~~~-l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 220 ALGPA-IHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCGG-GGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred cCchh-hccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 23322 45566666 9999988887 677 544 78899999999943 2 899999999999999998743
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.60 E-value=4.1e-08 Score=96.30 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=54.1
Q ss_pred CCCCchhccCCCcEEEecC-CCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCcc
Q 043908 210 EVPLSIEHLSGLVQLTLKG-CKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASC 276 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~-c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~ 276 (462)
.+|+.++++++|++|++++ |...+.+|..++++++|++|+++++. ++++|++|++++|. +..|.. .
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-I 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-G
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-H
Confidence 4566777777777777774 44455677777777777777776543 34477777777776 233322 3
Q ss_pred cccCcee-eeccCCCCCcccCC
Q 043908 277 YLLFPIN-LMLRSSDLGALMLP 297 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~L~lP 297 (462)
..+|.+. |+|++|.+++ .+|
T Consensus 146 ~~l~~L~~L~L~~N~l~~-~~p 166 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISG-AIP 166 (313)
T ss_dssp GGCTTCCEEECCSSCCEE-ECC
T ss_pred hcCCCCCeEECcCCcccC-cCC
Confidence 4455555 7777777765 455
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.57 E-value=8.1e-08 Score=105.80 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=91.1
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCc--
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSAS-- 275 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~-- 275 (462)
.+|..++++++|++|++++|...+.+|..++++++|++|++++|. .+++|++|++++|. +.+|...
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 568889999999999999987777899999999999999998875 34589999998886 3343210
Q ss_pred -------------------------------------------------------------------ccccCcee-eecc
Q 043908 276 -------------------------------------------------------------------CYLLFPIN-LMLR 287 (462)
Q Consensus 276 -------------------------------------------------------------------~~~lp~~~-L~Ls 287 (462)
...++.+. |+|+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 00112222 8888
Q ss_pred CCCCCcccCC-Ccc--------ccccCcCCCccCC-CC--CCccEEEeeCCCCCeeeccc
Q 043908 288 SSDLGALMLP-SLS--------ELEDCKRLQSQPQ-LP--PNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 288 ~n~l~~L~lP-~l~--------~l~~c~~L~~lp~-l~--~sL~~L~~~~C~sL~~lp~~ 335 (462)
+|++++ .+| .++ +|+++.--+.+|. +. ++|+.|+++++.--..+|..
T Consensus 641 ~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 641 YNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp SSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred CCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 898888 777 665 6666666667773 22 78888888887655566653
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.49 E-value=1e-06 Score=82.30 Aligned_cols=85 Identities=25% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
..+|..+. ++|++|+|++|...+..|..++++++|++|+|+++. .+++|++|++++|. ...+.....
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 45676554 789999999865444447778889999999998753 45588888888887 222222234
Q ss_pred ccCcee-eeccCCCCCcccCC
Q 043908 278 LLFPIN-LMLRSSDLGALMLP 297 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP 297 (462)
.++.+. |+|++|+|+ .+|
T Consensus 110 ~l~~L~~L~Ls~N~l~--~lp 128 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLT--ELP 128 (229)
T ss_dssp TCTTCCEEECCSSCCC--SCC
T ss_pred cchhhCeEeccCCccc--ccC
Confidence 455555 888888888 566
No 10
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.48 E-value=1.8e-07 Score=85.20 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=76.5
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCC--CCCCcccccCcee
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGP--PSSASCYLLFPIN 283 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~--~~~~~~~~lp~~~ 283 (462)
+.+.+++|++|++++| .+..+| .+..+++|++|++++|. .+++|++|++++|.-. .+.. ...+|.+.
T Consensus 39 ~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~ 115 (197)
T 4ezg_A 39 TEAQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLT 115 (197)
T ss_dssp BHHHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCC
T ss_pred ChhhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCC
Confidence 4577888888888874 667788 67888888888888763 3447888888887721 1221 34556655
Q ss_pred -eeccCCCCCcc------cCCCcc--ccccCcCCCccCCCC--CCccEEEeeCCCCCeeec
Q 043908 284 -LMLRSSDLGAL------MLPSLS--ELEDCKRLQSQPQLP--PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 284 -L~Ls~n~l~~L------~lP~l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~sL~~lp 333 (462)
|+|++|.++.. .+|.+. ++++|..++.+|.+. ++|++|++++|. ++.++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH
Confidence 88888888751 223333 666666566666433 678888887763 44444
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.46 E-value=4.1e-07 Score=98.00 Aligned_cols=121 Identities=15% Similarity=0.201 Sum_probs=84.7
Q ss_pred CCCchh--ccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCC------------------CCCccEEEeecCC-C
Q 043908 211 VPLSIE--HLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSK------------------LKNLKALSFRGCN-G 269 (462)
Q Consensus 211 iP~si~--~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~------------------L~~L~~L~l~~~~-~ 269 (462)
+|++++ ++++|++|++++|...+.+|..++++++|++|++++|.. +++|++|++++|. .
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899999 999999999999988999999999999999999999861 1689999999998 3
Q ss_pred CCCC-CcccccCcee-eeccCCCCCcccCCCcc--------ccccCcCCCccCCCC---CC-ccEEEeeCCCCCeeecc
Q 043908 270 PPSS-ASCYLLFPIN-LMLRSSDLGALMLPSLS--------ELEDCKRLQSQPQLP---PN-VTEVRVNGCASLVTLLG 334 (462)
Q Consensus 270 ~~~~-~~~~~lp~~~-L~Ls~n~l~~L~lP~l~--------~l~~c~~L~~lp~l~---~s-L~~L~~~~C~sL~~lp~ 334 (462)
.+|. .....++.+. |+|++|.+++ .+|.++ +++++. +..+|.-. ++ |++|+++++. ++.+|.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPN 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEE-ECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCcc-chhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccccch
Confidence 2332 0133444444 8888888886 666333 444432 23455211 44 6677766654 334543
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.45 E-value=1e-06 Score=90.70 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=15.7
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCcCEEeecC
Q 043908 219 SGLVQLTLKGCKNLSSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 219 ~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~ 252 (462)
++|++|+|++|......|..++++++|++|+|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 108 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC
Confidence 3455555555322222234455555555555554
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.45 E-value=1.4e-06 Score=83.21 Aligned_cols=120 Identities=24% Similarity=0.342 Sum_probs=82.7
Q ss_pred CCC-CchhccCCCcEEEecCCCCCCccCccC-CCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 210 EVP-LSIEHLSGLVQLTLKGCKNLSSLPATI-SSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 210 ~iP-~si~~L~~L~~L~l~~c~~l~~LP~~i-~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
.+| ..++.+++|++|++++| .+..+|..+ .++++|++|+++++. .+++|++|++++|. ...+....
T Consensus 51 ~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 129 (270)
T 2o6q_A 51 SLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129 (270)
T ss_dssp CCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred eeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh
Confidence 344 46888999999999985 677887765 678999999998753 45589999999887 22232223
Q ss_pred cccCcee-eeccCCCCCcccCC-C-cc--------ccccCcCCCccCC--CC--CCccEEEeeCCCCCeeecc
Q 043908 277 YLLFPIN-LMLRSSDLGALMLP-S-LS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~L~lP-~-l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C~sL~~lp~ 334 (462)
..++.+. |+|++|.++ .+| . ++ +++++ .+..+|. +. ++|++|+++++ .++.+|.
T Consensus 130 ~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 198 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQ--SLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPE 198 (270)
T ss_dssp TTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CcCcCCCEEECCCCcCC--ccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCH
Confidence 4566665 999999888 444 2 22 44444 3455553 33 78999999887 5666665
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.44 E-value=1.2e-06 Score=89.78 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=17.0
Q ss_pred CchhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSG 252 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~ 252 (462)
..++++++|++|+|++| .+..++ ..+.++++|++|+|++
T Consensus 82 ~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred HHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 33444444555555443 233332 3344444455554444
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.44 E-value=1.6e-06 Score=81.95 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=10.2
Q ss_pred CCccEEEeeCCCCCeeec
Q 043908 316 PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 316 ~sL~~L~~~~C~sL~~lp 333 (462)
++|++|+++++ .++.++
T Consensus 155 ~~L~~L~L~~N-~l~~~~ 171 (251)
T 3m19_A 155 TNLQTLSLSTN-QLQSVP 171 (251)
T ss_dssp TTCCEEECCSS-CCSCCC
T ss_pred cCCCEEECCCC-cCCccC
Confidence 56777777765 344444
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.44 E-value=1.1e-06 Score=84.54 Aligned_cols=81 Identities=27% Similarity=0.331 Sum_probs=39.1
Q ss_pred CCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLL 279 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~l 279 (462)
|..++.+++|++|++++|..+..+ |..++.+++|++|+++++. ++++|++|++++|. ...+......+
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 444555555555555554434444 4445555555555555532 23355555555554 11111112233
Q ss_pred Ccee-eeccCCCCC
Q 043908 280 FPIN-LMLRSSDLG 292 (462)
Q Consensus 280 p~~~-L~Ls~n~l~ 292 (462)
+.+. |+|++|+++
T Consensus 153 ~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 153 GNLTHLFLHGNRIS 166 (285)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCccEEECCCCccc
Confidence 4433 566665555
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.43 E-value=1.8e-07 Score=91.63 Aligned_cols=116 Identities=20% Similarity=0.303 Sum_probs=81.9
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~~ 277 (462)
.+|..++++++|++|++++|...+.+|..++++++|++|+++++. ++++|++|++++|. +..|.. ..
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~ 170 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YG 170 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GG
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-Hh
Confidence 678899999999999999976556899999999999999998754 45689999999998 233433 34
Q ss_pred ccC-cee-eeccCCCCCcccCC-Ccc-------ccccCcCCCccCCC---CCCccEEEeeCCC
Q 043908 278 LLF-PIN-LMLRSSDLGALMLP-SLS-------ELEDCKRLQSQPQL---PPNVTEVRVNGCA 327 (462)
Q Consensus 278 ~lp-~~~-L~Ls~n~l~~L~lP-~l~-------~l~~c~~L~~lp~l---~~sL~~L~~~~C~ 327 (462)
.++ .+. |+|++|.+++ .+| .+. +++++..-...|.. .++|++|+++++.
T Consensus 171 ~l~~~L~~L~L~~N~l~~-~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTG-KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp CCCTTCCEEECCSSEEEE-ECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred hhhhcCcEEECcCCeeec-cCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 455 444 8999998887 666 443 34443322223321 2667777777764
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.42 E-value=3.2e-07 Score=101.01 Aligned_cols=123 Identities=21% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~~~ 277 (462)
.+|..++++++|++|++++|...+.+|..++++++|++|++++|. .+++|++|++++|. +..|.. ..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~ 487 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LS 487 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-Hh
Confidence 456677777777777777766556777777777777777777654 23477788887776 233322 34
Q ss_pred ccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCCC-C--CCccEEEeeCCCCCeeecc
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQL-P--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~l-~--~sL~~L~~~~C~sL~~lp~ 334 (462)
.++.+. |+|++|.+++ .+| .++ ++++|+..+.+|.. . ++|++|++++|.-...+|.
T Consensus 488 ~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cCCCCCEEEccCCccCC-cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 455555 8888888876 666 444 56666655566632 2 7788888888765556664
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1e-06 Score=98.17 Aligned_cols=120 Identities=16% Similarity=0.245 Sum_probs=85.1
Q ss_pred CCCchh--ccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCC-------------------CCccEEEeecCC-
Q 043908 211 VPLSIE--HLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKL-------------------KNLKALSFRGCN- 268 (462)
Q Consensus 211 iP~si~--~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L-------------------~~L~~L~l~~~~- 268 (462)
+|++++ ++++|++|+|++|...+.+|..+++|++|++|+++++..+ ++|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 899988 9999999999999889999999999999999999988622 279999999998
Q ss_pred CCCCC-CcccccCcee-eeccCCCCCcccCCCcc--------ccccCcCCCccCC-CC--CC-ccEEEeeCCCCCeeecc
Q 043908 269 GPPSS-ASCYLLFPIN-LMLRSSDLGALMLPSLS--------ELEDCKRLQSQPQ-LP--PN-VTEVRVNGCASLVTLLG 334 (462)
Q Consensus 269 ~~~~~-~~~~~lp~~~-L~Ls~n~l~~L~lP~l~--------~l~~c~~L~~lp~-l~--~s-L~~L~~~~C~sL~~lp~ 334 (462)
..+|. .....++++. |+|++|+++ .+|.++ ++++|. +..+|. +. ++ |+.|++++|. ++.+|.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~ 636 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPN 636 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCch
Confidence 32332 0133444444 888888887 566332 455443 335652 22 44 7777777764 445554
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.37 E-value=3e-06 Score=81.06 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=60.6
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCce
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPI 282 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~ 282 (462)
.++.+++|++|++++| .+..+| .++++++|++|++++|. ++++|++|++++|. ...+......++.+
T Consensus 58 ~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 4666667777777764 344443 56666677777766542 33466677776665 22222112344444
Q ss_pred e-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCC--CC--CCccEEEeeCCCCCeeec
Q 043908 283 N-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 283 ~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C~sL~~lp 333 (462)
. |+|++|++++ +| .++ ++++| .+..+|. +. ++|++|++++|. ++.++
T Consensus 136 ~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 197 (272)
T 3rfs_A 136 TYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP 197 (272)
T ss_dssp CEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred CEEECCCCccCc--cCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccC
Confidence 4 6666666663 33 121 44444 2334442 11 667777777653 44444
No 21
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.35 E-value=1.1e-06 Score=85.98 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=84.4
Q ss_pred CCCCchhcc-----CCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC--------------CCCCccEEEeecCCC
Q 043908 210 EVPLSIEHL-----SGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS--------------KLKNLKALSFRGCNG 269 (462)
Q Consensus 210 ~iP~si~~L-----~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~--------------~L~~L~~L~l~~~~~ 269 (462)
.+|..++.+ ++|++|++++|. +..+| ..++++++|++|+++++. ++++|++|++++|.-
T Consensus 135 ~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 135 TRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred chhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 457788887 899999999865 45554 788999999999998864 456899999999971
Q ss_pred CC-CC---CcccccCcee-eeccCCCCCcccCC--------Ccc--ccccCcCCCccC-CCCCCccEEEeeCCCCCeeec
Q 043908 270 PP-SS---ASCYLLFPIN-LMLRSSDLGALMLP--------SLS--ELEDCKRLQSQP-QLPPNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 270 ~~-~~---~~~~~lp~~~-L~Ls~n~l~~L~lP--------~l~--~l~~c~~L~~lp-~l~~sL~~L~~~~C~sL~~lp 333 (462)
.. +. .....++.+. |+|++|.+++ ..| .++ +++++. ++.+| .++++|++|+++++ .++.+|
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p 290 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNP 290 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCC
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCc-ccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCCh
Confidence 10 00 0011234544 9999999986 232 222 566653 55777 35589999999987 566666
Q ss_pred c
Q 043908 334 G 334 (462)
Q Consensus 334 ~ 334 (462)
.
T Consensus 291 ~ 291 (312)
T 1wwl_A 291 S 291 (312)
T ss_dssp C
T ss_pred h
Confidence 5
No 22
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.34 E-value=3.5e-06 Score=81.57 Aligned_cols=116 Identities=23% Similarity=0.307 Sum_probs=70.2
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccccCcee-e
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYLLFPIN-L 284 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~lp~~~-L 284 (462)
.++.+++|++|++++| .+..+|. ++++++|++|+++++. .+++|++|++++|.-... +....+|.+. |
T Consensus 63 ~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L 139 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL 139 (291)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEE
T ss_pred hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEE
Confidence 4777788888888875 5666666 7788888888887653 445788888887761111 1134455555 7
Q ss_pred eccCCCCCcc----cCCCcc--ccccCcCCCccCCCC--CCccEEEeeCCCCCeeecc
Q 043908 285 MLRSSDLGAL----MLPSLS--ELEDCKRLQSQPQLP--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 285 ~Ls~n~l~~L----~lP~l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~sL~~lp~ 334 (462)
+|++|.++++ .+|.+. ++++| .+..++.+. ++|++|++++| .++.++.
T Consensus 140 ~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 140 YLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred EccCCcCCcchhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCChh
Confidence 8888777742 112222 44444 233443332 67888888776 4555544
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.33 E-value=4.8e-06 Score=79.88 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=75.6
Q ss_pred CchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC-----------CCCCccEEEeecCC-CCCCCCccccc
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS-----------KLKNLKALSFRGCN-GPPSSASCYLL 279 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~-~~~~~~~~~~l 279 (462)
..++.+++|++|++++| .+..+ |..++.+++|++|+++++. .+++|++|++++|. ...+......+
T Consensus 50 ~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred HHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 56888999999999986 45555 7788889999999998874 23488999999887 22222223456
Q ss_pred Ccee-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCC--CC--CCccEEEeeCCC
Q 043908 280 FPIN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGCA 327 (462)
Q Consensus 280 p~~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C~ 327 (462)
+.+. |+|++|.++. +| .++ +++++ .++.+|. +. ++|++|+++++.
T Consensus 129 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 129 AALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcccc--cCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc
Confidence 6665 8999988884 44 232 44444 3455553 22 678888887764
No 24
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.33 E-value=6.4e-06 Score=88.44 Aligned_cols=47 Identities=30% Similarity=0.423 Sum_probs=30.3
Q ss_pred eeccCCCCCcccCC----Ccc--ccccCcCCCccCCCCCCccEEEeeCCCCCeeecc
Q 043908 284 LMLRSSDLGALMLP----SLS--ELEDCKRLQSQPQLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 284 L~Ls~n~l~~L~lP----~l~--~l~~c~~L~~lp~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
|+|++|+|+ .+| +++ ++++| .+..+|..+++|+.|++++| .|+.+|.
T Consensus 226 L~Ls~N~L~--~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 226 LIVSGNRLT--SLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp EECCSSCCS--CCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCG
T ss_pred EEccCCccC--cCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCH
Confidence 777777777 344 233 55555 56677776677888888776 5666664
No 25
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.33 E-value=1.5e-06 Score=81.20 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=61.7
Q ss_pred chhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCCC-----------CCCccEEEeecCC-CCCCCCcccccC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCSK-----------LKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~~-----------L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
.++.+++|++|++++|..+..+|. .++++++|++|++++|.+ +++|++|++++|. ...|. ...++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--ccccc
Confidence 566777777777777544666665 456677777777765332 3367777777765 11221 12222
Q ss_pred ce----eeeccCC-CCCcccCC--Ccc---------ccccCcCCCccCCC---CCCccEEEeeCCCCCeeecc
Q 043908 281 PI----NLMLRSS-DLGALMLP--SLS---------ELEDCKRLQSQPQL---PPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 281 ~~----~L~Ls~n-~l~~L~lP--~l~---------~l~~c~~L~~lp~l---~~sL~~L~~~~C~sL~~lp~ 334 (462)
++ .|++++| +++ .+| .+. +++++ .++.+|.. .++|++|++++|+.++.+|.
T Consensus 128 ~L~~L~~L~l~~N~~l~--~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 128 STDIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp BCCSEEEEEEESCTTCC--EECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred ccccccEEECCCCcchh--hcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence 22 1666666 666 333 122 11111 23344421 14666667766666666653
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.33 E-value=4.2e-06 Score=78.91 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=74.7
Q ss_pred CCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLL 279 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~l 279 (462)
|..++.+++|++|+|++| .+..+ |..+.++++|++|+++++. .+++|++|++++|. ...+......+
T Consensus 52 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 52 DATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence 456888999999999986 44545 4457889999999998753 45689999999987 22332223445
Q ss_pred Ccee-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCC--CC--CCccEEEeeCC
Q 043908 280 FPIN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGC 326 (462)
Q Consensus 280 p~~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C 326 (462)
+.+. |+|++|++++ +| .++ +|+++ .+..+|. +. ++|++|+++++
T Consensus 131 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 131 TKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 6655 9999999884 44 232 44444 3444542 21 67777777765
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.32 E-value=2.6e-06 Score=83.20 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=18.2
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~ 252 (462)
.++.+++|++|++++| .+..+|. ++.+++|++|++++
T Consensus 58 ~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSG 94 (308)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCS
T ss_pred hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccC
Confidence 3445555555555543 3444444 44555555555544
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.31 E-value=3.5e-06 Score=80.53 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=77.9
Q ss_pred CchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
+.++.+++|++|++++| .+..+|.. ++++++|++|++++|. .+++|++|++++|. ...+......++
T Consensus 79 ~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 79 SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence 47889999999999986 56666654 6899999999998864 45589999999997 222322234566
Q ss_pred cee-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCC--CC--CCccEEEeeCCC
Q 043908 281 PIN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGCA 327 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C~ 327 (462)
.+. |+|++|++++ +| .++ ++++|. +..+|. +. ++|++|++++++
T Consensus 158 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 158 NLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 666 9999999984 44 222 555553 444442 22 788889888864
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.30 E-value=2.1e-06 Score=83.22 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=60.0
Q ss_pred CCCchhccCCCcEEEecCCCCCCccCc--cCCCCCCcCEEeecCCC----------CCCCccEEEeecCCC---CCCCCc
Q 043908 211 VPLSIEHLSGLVQLTLKGCKNLSSLPA--TISSLKSLRTLELSGCS----------KLKNLKALSFRGCNG---PPSSAS 275 (462)
Q Consensus 211 iP~si~~L~~L~~L~l~~c~~l~~LP~--~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~---~~~~~~ 275 (462)
+|..+..+++|++|++++| .+..+|. .+.++++|++|+++++. .+++|++|++++|.- ..|..
T Consensus 93 l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 170 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 170 (306)
T ss_dssp EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-
Confidence 4555666667777777664 4455543 55666677777766543 334666676666651 11211
Q ss_pred ccccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCCC----CCCccEEEeeCCC
Q 043908 276 CYLLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQL----PPNVTEVRVNGCA 327 (462)
Q Consensus 276 ~~~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~l----~~sL~~L~~~~C~ 327 (462)
...++.+. |+|++|.+++ ..| .+. +++++. +..+|.. .++|++|++++|.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred HhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 23344444 6666666664 112 222 344332 3333321 1678888888774
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.30 E-value=6.2e-06 Score=76.41 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=49.2
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
..+|..+. ++|+.|++++| .+..+|. .+..+++|++|+|+++. .+++|++|++++|. ..+|....
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred CcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 34555443 56777777774 5555554 56677777777777643 34477777777776 22232222
Q ss_pred cccCcee-eeccCCCCCc
Q 043908 277 YLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~ 293 (462)
..++.+. |+|++|.+++
T Consensus 101 ~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINC 118 (220)
T ss_dssp TTCTTCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCCCCE
Confidence 3445544 7777777763
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.30 E-value=6.1e-06 Score=78.71 Aligned_cols=114 Identities=20% Similarity=0.310 Sum_probs=79.7
Q ss_pred CCCCc-hhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 210 EVPLS-IEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 210 ~iP~s-i~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
.+|.. ++.+++|++|++++| .+..+|.. +..+++|++|+++++. .+++|++|++++|. ...+....
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 55655 488999999999986 56777754 5789999999998753 56699999999997 33333223
Q ss_pred cccCcee-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCC--CC--CCccEEEeeCCC
Q 043908 277 YLLFPIN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGCA 327 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C~ 327 (462)
..+|++. |+|++|.++. +| .+. +++++ .++.+|. +. ++|+.|++++++
T Consensus 154 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 4566666 9999999884 44 232 55555 4556663 22 678888887753
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.29 E-value=1.6e-06 Score=81.01 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=88.3
Q ss_pred CCCC-chhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCC--------CCCCCcc---EEEeecC-C-CCCCCC
Q 043908 210 EVPL-SIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGC--------SKLKNLK---ALSFRGC-N-GPPSSA 274 (462)
Q Consensus 210 ~iP~-si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c--------~~L~~L~---~L~l~~~-~-~~~~~~ 274 (462)
.+|+ .++.+++|++|++++|+.+..+|. .++++++|++|+++++ ..+.+|+ +|++++| . ..++..
T Consensus 70 ~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcc
Confidence 3444 678999999999998668888875 5678999999999875 2444666 9999999 4 222222
Q ss_pred cccccCcee--eeccCCCCCcccCC-C------cc--ccccCcCCCccCC--C--C-CCccEEEeeCCCCCeeeccc
Q 043908 275 SCYLLFPIN--LMLRSSDLGALMLP-S------LS--ELEDCKRLQSQPQ--L--P-PNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 275 ~~~~lp~~~--L~Ls~n~l~~L~lP-~------l~--~l~~c~~L~~lp~--l--~-~sL~~L~~~~C~sL~~lp~~ 335 (462)
....++.+. |++++|+++ .+| . ++ ++++++.++.+|. + . ++|++|+++++ .++.+|..
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred cccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence 234455543 889999998 566 2 22 7788877888873 2 2 68999999984 57777754
No 33
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.28 E-value=3.2e-06 Score=90.50 Aligned_cols=76 Identities=26% Similarity=0.325 Sum_probs=38.6
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccccCcee-e
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYLLFPIN-L 284 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~lp~~~-L 284 (462)
.++.|++|+.|+|++| .+..+|. ++.|++|+.|+|++|. .+++|++|+|++|.-... +....+|.+. |
T Consensus 60 ~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL 136 (605)
T ss_dssp TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEE
T ss_pred HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC-ccccCCCccCEE
Confidence 4556666666666654 4444544 5566666666665542 333566666665551111 1123344443 5
Q ss_pred eccCCCCC
Q 043908 285 MLRSSDLG 292 (462)
Q Consensus 285 ~Ls~n~l~ 292 (462)
+|++|.++
T Consensus 137 ~Ls~N~l~ 144 (605)
T 1m9s_A 137 YLGNNKIT 144 (605)
T ss_dssp ECCSSCCC
T ss_pred ECCCCccC
Confidence 55555555
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.26 E-value=2.8e-06 Score=89.20 Aligned_cols=59 Identities=34% Similarity=0.326 Sum_probs=34.3
Q ss_pred CCCCch-hccCCCcEEEecCCCCCCccC---ccCCCCCCcCEEeecCCC------------CCCCccEEEeecCC
Q 043908 210 EVPLSI-EHLSGLVQLTLKGCKNLSSLP---ATISSLKSLRTLELSGCS------------KLKNLKALSFRGCN 268 (462)
Q Consensus 210 ~iP~si-~~L~~L~~L~l~~c~~l~~LP---~~i~~L~~L~~L~l~~c~------------~L~~L~~L~l~~~~ 268 (462)
.+|..+ +.+++|++|++++|...+.+| ..++.+++|++|++++|. .+++|++|++++|.
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 345555 456677777777665444443 235566667777766643 23366666666665
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.25 E-value=3.9e-08 Score=101.73 Aligned_cols=120 Identities=20% Similarity=0.250 Sum_probs=76.5
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCc-------------CEEeecCCC------CCCCccEEEeecCC-
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSL-------------RTLELSGCS------KLKNLKALSFRGCN- 268 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L-------------~~L~l~~c~------~L~~L~~L~l~~~~- 268 (462)
..+|+++++|++|++|++++|...+.+|.+++++.+| ++|++++|. ..++|++|++++|.
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL 103 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcC
Confidence 4689999999999999999987777999999999876 888888764 11378888888887
Q ss_pred CCCCCCcccccCcee-eeccCCCCCcc-cCC-Ccc--ccccCcCCCccCCCC--CCccEEEeeCCCCCeeecc
Q 043908 269 GPPSSASCYLLFPIN-LMLRSSDLGAL-MLP-SLS--ELEDCKRLQSQPQLP--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 269 ~~~~~~~~~~lp~~~-L~Ls~n~l~~L-~lP-~l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~sL~~lp~ 334 (462)
...|. .++.+. |++++|+++++ .+| .++ ++++| .++.+|.+. ++|++|++++| .++.+|.
T Consensus 104 ~~lp~----~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~ 170 (454)
T 1jl5_A 104 TELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNN-SLKKLPD 170 (454)
T ss_dssp SSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSCCCC
T ss_pred Ccccc----ccCCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCCCcccCCCCCCCEEECCCC-cCcccCC
Confidence 11221 112233 88888888843 233 444 66665 455677654 78999999887 4666664
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.24 E-value=5.2e-06 Score=80.38 Aligned_cols=118 Identities=25% Similarity=0.284 Sum_probs=74.9
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCcccccCc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
|..+..+++|++|+|++| .+..+|.. +.+++|++|+++++. .+++|++|++++|. ...+......++.
T Consensus 48 ~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125 (290)
T ss_dssp GGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred HHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence 456777788888888874 56667654 677888888887643 34578888888876 2222222344555
Q ss_pred ee-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCC--C--CCCccEEEeeCCCCCeeeccc
Q 043908 282 IN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQ--L--PPNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~--l--~~sL~~L~~~~C~sL~~lp~~ 335 (462)
+. |+|++|+++ .+| .+. +++++ .++.+|. + .++|++|+++++ .++++|..
T Consensus 126 L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~ 190 (290)
T 1p9a_G 126 LQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG 190 (290)
T ss_dssp CCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCC--ccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChh
Confidence 55 888888887 344 122 44443 4566663 1 278888888876 46677653
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.24 E-value=4.6e-06 Score=85.36 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=50.7
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC------------CCCCccEEEeecCC--CCCCCCccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS------------KLKNLKALSFRGCN--GPPSSASCY 277 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~------------~L~~L~~L~l~~~~--~~~~~~~~~ 277 (462)
|..++.+++|++|+|++|......|..++++++|++|++++|. ++++|++|++++|. +..|.....
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 3456777777777777764444446677777777777776653 23467777777776 222222233
Q ss_pred ccCcee-eeccCCCCCc
Q 043908 278 LLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~ 293 (462)
.++.+. |+|++|.+++
T Consensus 152 ~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp GCTTCCEEECTTCCBSC
T ss_pred CCCcccEEeCCCCcccc
Confidence 455555 7777777775
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.23 E-value=3.6e-06 Score=87.84 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=86.0
Q ss_pred hccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC------------CCCCccEEEeecCCCC--CCCCcccccCc
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS------------KLKNLKALSFRGCNGP--PSSASCYLLFP 281 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~------------~L~~L~~L~l~~~~~~--~~~~~~~~lp~ 281 (462)
+.+++|++|++++|...+.+|..++++++|++|++++|. .+++|++|++++|.-. .|......++.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 678899999999986666688899999999999998764 4558999999998821 33322334455
Q ss_pred ee-eeccCCCCCcccCC-C----cc--ccccCcCCCccCC-C--CCCccEEEeeCCCCCeeeccc
Q 043908 282 IN-LMLRSSDLGALMLP-S----LS--ELEDCKRLQSQPQ-L--PPNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP-~----l~--~l~~c~~L~~lp~-l--~~sL~~L~~~~C~sL~~lp~~ 335 (462)
+. |+|++|.+++ .+| . +. ++++| .+..+|. + .++|++|++++| .++.+|..
T Consensus 401 L~~L~Ls~N~l~~-~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 401 LLSLNMSSNILTD-TIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CCEEECCSSCCCG-GGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred CCEEECcCCCCCc-chhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 55 9999999876 444 3 33 67776 4567774 2 288999999997 57778764
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.23 E-value=9.8e-06 Score=83.60 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=28.3
Q ss_pred CCchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
|..++++++|++|+|++| .+..+|.. ++++++|++|+++++. ++++|++|++++|.
T Consensus 73 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred hhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 445555555555555553 34445443 3455555555555432 23355555555554
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.22 E-value=4.5e-06 Score=85.49 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=75.1
Q ss_pred CCchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCCCC--CCCCcccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGP--PSSASCYL 278 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~--~~~~~~~~ 278 (462)
|..++.+++|++|+|++| .+..+|. .+..+++|++|+++++. ++++|++|++++|... ++......
T Consensus 105 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183 (440)
T ss_dssp GGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc
Confidence 356788889999999885 6677776 57788899999988753 4568889999886632 22222345
Q ss_pred cCcee-eeccCCCCCcccCCCcc--------ccccCcCCCccC-C-CC--CCccEEEeeCC
Q 043908 279 LFPIN-LMLRSSDLGALMLPSLS--------ELEDCKRLQSQP-Q-LP--PNVTEVRVNGC 326 (462)
Q Consensus 279 lp~~~-L~Ls~n~l~~L~lP~l~--------~l~~c~~L~~lp-~-l~--~sL~~L~~~~C 326 (462)
++++. |+|++|+++ .+|.+. +|+++ .+..++ . +. ++|+.|+++++
T Consensus 184 l~~L~~L~L~~n~l~--~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CSSCCEEECTTSCCS--SCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCeecCCCCcCc--cccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC
Confidence 56655 888888888 566332 55555 344443 2 22 78888888775
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.21 E-value=6.3e-06 Score=84.69 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=61.0
Q ss_pred CchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCCCC--CCCCccccc
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGP--PSSASCYLL 279 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~--~~~~~~~~l 279 (462)
..++.+++|++|+|++| .+..+|.. ++.+++|++|+++++. ++++|++|++++|..+ ++......+
T Consensus 117 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp TTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 45566666666666664 45555543 5556666666666532 3446666666665422 121123344
Q ss_pred Ccee-eeccCCCCCcccCCCcc--------ccccCcCCCcc-CC-C--CCCccEEEeeCCC
Q 043908 280 FPIN-LMLRSSDLGALMLPSLS--------ELEDCKRLQSQ-PQ-L--PPNVTEVRVNGCA 327 (462)
Q Consensus 280 p~~~-L~Ls~n~l~~L~lP~l~--------~l~~c~~L~~l-p~-l--~~sL~~L~~~~C~ 327 (462)
+.+. |+|++|+++ .+|.+. +|+++. +..+ |. + .++|++|+++++.
T Consensus 196 ~~L~~L~L~~n~l~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 196 FNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp TTCCEEECTTSCCS--SCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCccc--ccccccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCc
Confidence 5544 788888877 455222 444443 2233 21 1 1678888887763
No 42
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.20 E-value=4.5e-06 Score=89.38 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccccCc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYLLFP 281 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~lp~ 281 (462)
++|+ ++.+++|++|+|++| .+..+| .++.+++|++|+|++|. .+++|+.|+|++|.-... +.+..+|.
T Consensus 79 ~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~ 154 (605)
T 1m9s_A 79 DIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTK 154 (605)
T ss_dssp CCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTT
T ss_pred CChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCC
Confidence 3444 889999999999986 667776 68899999999998864 455899999999871111 22455666
Q ss_pred ee-eeccCCCCCcc----cCCCcc--ccccCcCCCccCCCC--CCccEEEeeCCC
Q 043908 282 IN-LMLRSSDLGAL----MLPSLS--ELEDCKRLQSQPQLP--PNVTEVRVNGCA 327 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L----~lP~l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~ 327 (462)
+. |+|++|.|+++ .+|.|. +|++| .+..+|.+. ++|+.|++++|+
T Consensus 155 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred CCEEECcCCcCCCchhhccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 66 99999988852 122233 55554 345555443 788888888763
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.20 E-value=2.3e-06 Score=91.09 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=86.7
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--C-CCCCCc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--G-PPSSAS 275 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~-~~~~~~ 275 (462)
.+|..++.+++|++|++++|...+..| ..++++++|++|++++|. .+++|++|++++|. + ..|..
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 468 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV- 468 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-
Confidence 347888899999999999875555555 578899999999998864 45589999999987 1 12221
Q ss_pred ccccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCC-CC--CCccEEEeeCCCCCeeeccc
Q 043908 276 CYLLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQ-LP--PNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 276 ~~~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~-l~--~sL~~L~~~~C~sL~~lp~~ 335 (462)
...++.+. |+|++|++++ ..| .++ ++++|.-....|. +. ++|++|++++|. ++++|..
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp CTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred hccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 34555555 9999998885 333 333 6666644444353 22 789999999985 7788764
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.20 E-value=5.2e-06 Score=80.40 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=79.9
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccccCc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYLLFP 281 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~lp~ 281 (462)
++|+ ++.+++|++|++++| .+..+|. ++.+++|++|++++|. .+++|++|++++|.-... +....++.
T Consensus 82 ~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~ 157 (291)
T 1h6t_A 82 DIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTK 157 (291)
T ss_dssp CCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTT
T ss_pred CCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCC
Confidence 4454 889999999999986 6777765 8899999999998864 455899999999971111 22445566
Q ss_pred ee-eeccCCCCCcc----cCCCcc--ccccCcCCCccCCCC--CCccEEEeeCCC
Q 043908 282 IN-LMLRSSDLGAL----MLPSLS--ELEDCKRLQSQPQLP--PNVTEVRVNGCA 327 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L----~lP~l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~ 327 (462)
+. |+|++|.++++ .+|.++ ++++| .+..+|.+. ++|+.|++++++
T Consensus 158 L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCEEEccCCccccchhhcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 55 99999998852 122222 55554 455566444 789999998863
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.20 E-value=4.7e-06 Score=86.03 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=51.5
Q ss_pred CCCC-chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 210 EVPL-SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 210 ~iP~-si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
.+|. .++++++|++|+|++|......|..++++++|++|+++++. .+++|++|++++|. ...+.....
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 4454 35778888888888765544456677778888888887643 34577788887776 222211123
Q ss_pred ccCcee-eeccCCCCCc
Q 043908 278 LLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~ 293 (462)
.++.+. |+|++|++.+
T Consensus 174 ~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TCTTCCEEEEESCCCCE
T ss_pred ccCCCcEEeCCCCcCcE
Confidence 344444 6777666663
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.19 E-value=4.9e-06 Score=87.27 Aligned_cols=79 Identities=23% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCCC-CC-CCccccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGP-PS-SASCYLL 279 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~-~~-~~~~~~l 279 (462)
|..++++++|++|++++|......|..++++++|++|+++++. ++++|++|++++|.-. .+ ......+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 4556667777777777653333333556677777777776643 3446777777766511 01 1112334
Q ss_pred Ccee-eeccCCC
Q 043908 280 FPIN-LMLRSSD 290 (462)
Q Consensus 280 p~~~-L~Ls~n~ 290 (462)
+.+. |+|++|.
T Consensus 123 ~~L~~L~L~~n~ 134 (549)
T 2z81_A 123 TNLQTLRIGNVE 134 (549)
T ss_dssp TTCCEEEEEESS
T ss_pred CCccEEECCCCc
Confidence 4444 6666665
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.18 E-value=9.5e-06 Score=78.52 Aligned_cols=107 Identities=24% Similarity=0.228 Sum_probs=73.2
Q ss_pred hccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCcee-
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN- 283 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~- 283 (462)
+.+++|++|++++| .+..+|..++.+++|++|+++++. .+++|++|++++|. ...+......++.+.
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 67888999999985 778889888889999999998753 45588999999887 323322233455555
Q ss_pred eeccCCCCCcccCC-C-cc--------ccccCcCCCccCCCC---CCccEEEeeCC
Q 043908 284 LMLRSSDLGALMLP-S-LS--------ELEDCKRLQSQPQLP---PNVTEVRVNGC 326 (462)
Q Consensus 284 L~Ls~n~l~~L~lP-~-l~--------~l~~c~~L~~lp~l~---~sL~~L~~~~C 326 (462)
|+|++|+|+ .+| . +. +++++ .++.+|.-. ++|+.|++++.
T Consensus 153 L~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 153 LSLANNNLT--ELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCS--CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred EECCCCcCC--ccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 899999888 555 2 22 34433 355666322 56777777764
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.17 E-value=2e-05 Score=71.79 Aligned_cols=80 Identities=29% Similarity=0.339 Sum_probs=46.7
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
.+|..+ .++|++|++++| .+..+|.. ++++++|++|+++++. .+++|++|++++|. ...+.....
T Consensus 21 ~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp SCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 444433 346777777775 45555543 4677777777777642 34477777777776 222222223
Q ss_pred ccCcee-eeccCCCCC
Q 043908 278 LLFPIN-LMLRSSDLG 292 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~ 292 (462)
.++.+. |+|++|+++
T Consensus 98 ~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQ 113 (208)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CccCCCEEEcCCCcCc
Confidence 445544 777777776
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.17 E-value=9.4e-06 Score=87.16 Aligned_cols=99 Identities=25% Similarity=0.264 Sum_probs=54.0
Q ss_pred ccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC------CCCCccEEEeecCC-CCCCCCcccccCcee-eeccC
Q 043908 217 HLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LMLRS 288 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~ 288 (462)
.+++|++|+|++| .+..+|. .+++|++|+++++. .+.+|+.|++++|. ..+|. .+|++. |+|++
T Consensus 79 ~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~ 150 (622)
T 3g06_A 79 LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSD 150 (622)
T ss_dssp CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC----CCCCCCEEECcC
Confidence 4566677777664 4566665 45666677766643 23366667766665 11111 123333 77777
Q ss_pred CCCCcccCC----Ccc--ccccCcCCCccCCCCCCccEEEeeCC
Q 043908 289 SDLGALMLP----SLS--ELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 289 n~l~~L~lP----~l~--~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
|+++ .+| +++ .+.++ .+..+|..+++|+.|++++|
T Consensus 151 N~l~--~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 151 NQLA--SLPALPSELCKLWAYNN-QLTSLPMLPSGLQELSVSDN 191 (622)
T ss_dssp SCCS--CCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CcCC--CcCCccCCCCEEECCCC-CCCCCcccCCCCcEEECCCC
Confidence 7777 344 222 33332 34555555566666666654
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.16 E-value=3.1e-06 Score=82.50 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=70.7
Q ss_pred hccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------------CCCCccEEEeecCCCCC-CCC---ccc
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------------KLKNLKALSFRGCNGPP-SSA---SCY 277 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------------~L~~L~~L~l~~~~~~~-~~~---~~~ 277 (462)
..+++|++|++++|......|..++.+++|++|+++++. .+++|++|++++|.-.. +.. ...
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 457788888888865544445677788888888888764 34578888888887110 100 011
Q ss_pred ccCcee-eeccCCCCCcccCC-Ccc-----------ccccCcCCCccC-CCCCCccEEEeeCCCCCeeecc
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLS-----------ELEDCKRLQSQP-QLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~-----------~l~~c~~L~~lp-~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
.++.+. |+|++|.+++ ..| .+. +++++ .++.+| .++++|++|+++++ .++.+|.
T Consensus 222 ~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp HTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSC-CCCSCCC
T ss_pred cCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCC-cCCCCch
Confidence 234444 8888888885 334 332 44433 344566 35577888888776 3555543
No 51
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.16 E-value=4.6e-06 Score=79.58 Aligned_cols=53 Identities=28% Similarity=0.371 Sum_probs=27.8
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN 268 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~ 268 (462)
.+..+++|++|++++| .+..+| .++.+++|++|+++++. .+++|++|++++|.
T Consensus 36 ~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96 (263)
T ss_dssp CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence 3455555555555553 445555 45555555555555532 33355555555554
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.16 E-value=8e-07 Score=95.76 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=89.2
Q ss_pred CCCCchhccCCCcEEEecCCCCCCc-----------------cCccCC--CCCCcCEEeecCCC----------CCCCcc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSS-----------------LPATIS--SLKSLRTLELSGCS----------KLKNLK 260 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~-----------------LP~~i~--~L~~L~~L~l~~c~----------~L~~L~ 260 (462)
.+|+.++++++|++|+|++|...+. +|.+++ ++++|++|++++|. ++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 3799999999999999999764443 999999 99999999999875 456999
Q ss_pred EEEeecCCCC----CCCCccccc------Ccee-eeccCCCCCcccCCC---cc--------ccccCcCCCccCCCC--C
Q 043908 261 ALSFRGCNGP----PSSASCYLL------FPIN-LMLRSSDLGALMLPS---LS--------ELEDCKRLQSQPQLP--P 316 (462)
Q Consensus 261 ~L~l~~~~~~----~~~~~~~~l------p~~~-L~Ls~n~l~~L~lP~---l~--------~l~~c~~L~~lp~l~--~ 316 (462)
+|++++|... +|.. ...+ +++. |+|++|+++ .+|. ++ ++++|..-+.+|.+. +
T Consensus 277 ~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred EEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence 9999999722 2221 2222 5555 999999999 6774 33 555554433777443 7
Q ss_pred CccEEEeeCCCCCeeecc
Q 043908 317 NVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 317 sL~~L~~~~C~sL~~lp~ 334 (462)
+|++|++++|. ++.+|.
T Consensus 354 ~L~~L~L~~N~-l~~lp~ 370 (636)
T 4eco_A 354 KLASLNLAYNQ-ITEIPA 370 (636)
T ss_dssp EESEEECCSSE-EEECCT
T ss_pred CCCEEECCCCc-cccccH
Confidence 89999998873 445554
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.16 E-value=7.3e-06 Score=78.21 Aligned_cols=115 Identities=23% Similarity=0.202 Sum_probs=63.5
Q ss_pred chhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCC-C--CCCCccccc
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNG-P--PSSASCYLL 279 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~-~--~~~~~~~~l 279 (462)
.++.+++|++|++++|. +..+| ..++++++|++|+++++. .+++|++|++++|.- . .|.. ...+
T Consensus 71 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l 148 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNL 148 (276)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGC
T ss_pred HccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccC
Confidence 56666667777776643 33333 456666777777666532 334677777777661 1 1211 3334
Q ss_pred Ccee-eeccCCCCCcccCC--Ccc------------ccccCcCCCccCC-CC--CCccEEEeeCCCCCeeecc
Q 043908 280 FPIN-LMLRSSDLGALMLP--SLS------------ELEDCKRLQSQPQ-LP--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 280 p~~~-L~Ls~n~l~~L~lP--~l~------------~l~~c~~L~~lp~-l~--~sL~~L~~~~C~sL~~lp~ 334 (462)
+.+. |+|++|.+++ +| .+. +++++ .+..+|. .. .+|++|+++++. ++.+|.
T Consensus 149 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 149 TNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPD 217 (276)
T ss_dssp TTCCEEECCSSCCCE--ECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCT
T ss_pred CCCCEEECCCCCCCc--CCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCH
Confidence 4444 7777777773 33 232 12222 2334442 11 478999998875 666664
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.15 E-value=7.4e-06 Score=79.90 Aligned_cols=117 Identities=23% Similarity=0.371 Sum_probs=78.2
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCC-CCCCCcccccC
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNG-PPSSASCYLLF 280 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~-~~~~~~~~~lp 280 (462)
++|+ ++.+++|++|++++| .+..+| .++.+++|++|++++|. .+++|++|++++|.- ..+ ....++
T Consensus 77 ~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~ 151 (308)
T 1h6u_A 77 DLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLT 151 (308)
T ss_dssp CCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCT
T ss_pred CChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCc--cccCCC
Confidence 4455 888999999999986 577776 58889999999998864 455899999998871 111 134555
Q ss_pred cee-eeccCCCCCcc----cCCCcc--ccccCcCCCccCCCC--CCccEEEeeCCCCCeeec
Q 043908 281 PIN-LMLRSSDLGAL----MLPSLS--ELEDCKRLQSQPQLP--PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~L----~lP~l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~sL~~lp 333 (462)
.+. |+|++|.++++ .+|.+. ++++| .+..+|.+. ++|++|++++| .++.++
T Consensus 152 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~ 211 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDVS 211 (308)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCG
T ss_pred CccEEEccCCcCCCChhhcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCC-ccCccc
Confidence 555 88998888842 112222 44444 334444333 78888888887 355554
No 55
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.14 E-value=3.8e-06 Score=74.03 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
.+|..++.+++|++|++++|. +..+ ..++.+++|++|++++|. .+++|++|++++|.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 106 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS
T ss_pred hHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc
Confidence 455555566666666666542 4444 455555666666665543 13355555555554
No 56
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.14 E-value=2.3e-06 Score=73.78 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=14.9
Q ss_pred CCcEEEecCCCCC-CccCccCCCCCCcCEEeecC
Q 043908 220 GLVQLTLKGCKNL-SSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 220 ~L~~L~l~~c~~l-~~LP~~i~~L~~L~~L~l~~ 252 (462)
+|+.|++++|... +.+|..++.+++|++|++++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 51 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN 51 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC
Confidence 4445555543221 14444444455555555444
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.14 E-value=9.6e-06 Score=86.51 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=26.2
Q ss_pred hhccCCCcEEEecCCCCCCccCccC-CCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATI-SSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i-~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
++.+++|++|+|++| .+..+|..+ +++++|++|++++|. .+++|++|++++|.
T Consensus 119 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 119 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred HcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 455555555555553 344454442 455555555555432 23355555555554
No 58
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=1.2e-05 Score=72.91 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=56.7
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
..+|..+. ++|++|++++| .+..+|..+.++++|++|+++++. .+++|++|++++|. ..++.....
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 45666543 58999999985 778999889999999999998743 44578888888877 222222233
Q ss_pred ccCcee-eeccCCCCC
Q 043908 278 LLFPIN-LMLRSSDLG 292 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~ 292 (462)
.+|.+. |+|++|.|+
T Consensus 100 ~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDIS 115 (193)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCCCC
Confidence 455555 777777777
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.12 E-value=1.2e-05 Score=85.02 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=86.8
Q ss_pred hccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC------------CCCCccEEEeecCC--CCCCCCcccccCc
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS------------KLKNLKALSFRGCN--GPPSSASCYLLFP 281 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~------------~L~~L~~L~l~~~~--~~~~~~~~~~lp~ 281 (462)
+.+++|++|++++|...+.+|..++++++|++|+++++. ++++|++|++++|. +..|......++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 678899999999986666688889999999999998753 44589999999988 2244333344555
Q ss_pred ee-eeccCCCCCcccCC-C----cc--ccccCcCCCccCC-CC--CCccEEEeeCCCCCeeeccc
Q 043908 282 IN-LMLRSSDLGALMLP-S----LS--ELEDCKRLQSQPQ-LP--PNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP-~----l~--~l~~c~~L~~lp~-l~--~sL~~L~~~~C~sL~~lp~~ 335 (462)
+. |+|++|.+++ .+| . +. ++++| .++.+|. +. ++|++|+++++ .++.+|..
T Consensus 430 L~~L~l~~n~l~~-~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTG-SVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCEEECCSSCCCG-GGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCCc-chhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 55 9999999976 444 3 33 77776 6778874 22 78999999987 57778764
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.11 E-value=1.4e-05 Score=73.93 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=31.1
Q ss_pred CcEEEecCCCCCCccC-c-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCcee-eec
Q 043908 221 LVQLTLKGCKNLSSLP-A-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LML 286 (462)
Q Consensus 221 L~~L~l~~c~~l~~LP-~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~L 286 (462)
+++|+|++| .+..+| . .++++++|++|+++++. .+++|++|++++|. ...+......++.+. |+|
T Consensus 34 ~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 345555553 334442 1 23455555555555432 23355555555554 111111122333333 555
Q ss_pred cCCCCC
Q 043908 287 RSSDLG 292 (462)
Q Consensus 287 s~n~l~ 292 (462)
++|+++
T Consensus 113 s~N~l~ 118 (220)
T 2v70_A 113 RSNRIT 118 (220)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 555555
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.11 E-value=3.8e-06 Score=89.29 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=87.7
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC-----------CCCCccEEEeecCC--CCCCCCcccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-----------KLKNLKALSFRGCN--GPPSSASCYL 278 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~--~~~~~~~~~~ 278 (462)
|..++.+++|++|++++| .+..+|..++.+++|++|++++|. .+++|++|++++|. +..|.. ...
T Consensus 369 ~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~ 446 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLG 446 (606)
T ss_dssp CHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-TTT
T ss_pred hhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-hcC
Confidence 778899999999999996 578899999999999999998753 45699999999998 222222 445
Q ss_pred cCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCC-CC--CCccEEEeeCCCCCeeecc
Q 043908 279 LFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQ-LP--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 279 lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~-l~--~sL~~L~~~~C~sL~~lp~ 334 (462)
++++. |+|++|.+++-.+| .++ ++++|.--...|. +. ++|++|++++|.-....|.
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 66666 99999988851134 333 6677644333343 22 8999999999854444354
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.10 E-value=8.7e-06 Score=73.83 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=62.8
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCCCC-CCCcccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGPP-SSASCYL 278 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~~-~~~~~~~ 278 (462)
++| .++.+++|++|++++| .+..+| .+..+++|++|+++++. .+++|++|++++|.-.. .......
T Consensus 58 ~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 58 DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 445 5777777777777776 444444 56677777777777643 34477777777776111 0011234
Q ss_pred cCcee-eeccCCC-CCcccCCC------cc--ccccCcCCCccCCCC--CCccEEEeeCC
Q 043908 279 LFPIN-LMLRSSD-LGALMLPS------LS--ELEDCKRLQSQPQLP--PNVTEVRVNGC 326 (462)
Q Consensus 279 lp~~~-L~Ls~n~-l~~L~lP~------l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C 326 (462)
+|.+. |+|++|. ++ .+|. ++ ++++|. +..+|.+. ++|++|++++.
T Consensus 135 l~~L~~L~L~~n~~i~--~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEECCSCTBCC--CCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred CCCCCEEEccCCCCcc--ccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCc
Confidence 44444 7777776 55 3442 22 344332 33343222 67788887764
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.10 E-value=6.1e-06 Score=80.51 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCCCch--hccCCCcEEEecCCCCCCccCccCCCC-----CCcCEEeecCCC----------CCCCccEEEeecCCCCC-
Q 043908 210 EVPLSI--EHLSGLVQLTLKGCKNLSSLPATISSL-----KSLRTLELSGCS----------KLKNLKALSFRGCNGPP- 271 (462)
Q Consensus 210 ~iP~si--~~L~~L~~L~l~~c~~l~~LP~~i~~L-----~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~~- 271 (462)
.+|..+ +.+++|++|++++| .+..+|..++.+ ++|++|+++++. .+++|++|++++|.-..
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 567766 88999999999986 566668777766 899999998753 45589999999887210
Q ss_pred ---CCC-cccccCcee-eeccCCCCCcc---------cCCCcc--ccccCcCCCccC--CC--CCCccEEEeeCCCCCee
Q 043908 272 ---SSA-SCYLLFPIN-LMLRSSDLGAL---------MLPSLS--ELEDCKRLQSQP--QL--PPNVTEVRVNGCASLVT 331 (462)
Q Consensus 272 ---~~~-~~~~lp~~~-L~Ls~n~l~~L---------~lP~l~--~l~~c~~L~~lp--~l--~~sL~~L~~~~C~sL~~ 331 (462)
+.. ....++.+. |+|++|+++++ .+|.++ +++++.--...| .. .++|++|++++|. ++.
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 267 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ 267 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSS
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cCh
Confidence 101 013455555 89999988832 123333 566654333232 22 3789999998874 567
Q ss_pred eccc
Q 043908 332 LLGA 335 (462)
Q Consensus 332 lp~~ 335 (462)
+|..
T Consensus 268 ip~~ 271 (312)
T 1wwl_A 268 VPKG 271 (312)
T ss_dssp CCSS
T ss_pred hhhh
Confidence 7653
No 64
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.10 E-value=1.6e-06 Score=94.88 Aligned_cols=111 Identities=25% Similarity=0.242 Sum_probs=66.5
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCccccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLL 279 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~l 279 (462)
.+|..+..+++|++|+|++| .+..+|.++++|++|++|+|+++. +|.+|++|+|++|. ..+|.. +..+
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l 315 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNL 315 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSC
T ss_pred CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcC
Confidence 56777778888888888875 566888888888888888887754 34478888888876 333433 4455
Q ss_pred Ccee-eeccCCCCCcccCC-Ccc---------ccccCcCCCccCCCCCCccEEEeeCC
Q 043908 280 FPIN-LMLRSSDLGALMLP-SLS---------ELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 280 p~~~-L~Ls~n~l~~L~lP-~l~---------~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
+.+. |+|++|.|++ .+| .+. .|.++..-. .+|..|+.|+++++
T Consensus 316 ~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~---~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEI---PLPHERRFIEINTD 369 (727)
T ss_dssp TTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC---------
T ss_pred CCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccC---cCccccceeEeecc
Confidence 5555 8888888886 455 332 233332222 34456666766654
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.08 E-value=1.1e-05 Score=85.60 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=14.7
Q ss_pred CCcEEEecCCCCCCccCc-cCCCCCCcCEEeecC
Q 043908 220 GLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSG 252 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~ 252 (462)
++++|+|++| .+..+|. ++.++++|++|+|++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~ 85 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSR 85 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCC
Confidence 3445555542 3444432 344455555555544
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.08 E-value=1.8e-05 Score=79.43 Aligned_cols=38 Identities=34% Similarity=0.430 Sum_probs=19.0
Q ss_pred chhccCCCcEEEecCCCCCCccCccC-CCCCCcCEEeecC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATI-SSLKSLRTLELSG 252 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i-~~L~~L~~L~l~~ 252 (462)
.++.+++|++|++++| .+..+|..+ +++++|++|++++
T Consensus 112 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred HhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCC
Confidence 3455555555555543 444555443 4555555555554
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.08 E-value=1.4e-05 Score=78.35 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCCC--C-----CCccEEEeecCC-CCCCCCcccccCce
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCSK--L-----KNLKALSFRGCN-GPPSSASCYLLFPI 282 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~~--L-----~~L~~L~l~~~~-~~~~~~~~~~lp~~ 282 (462)
|..++++++|++|++++|. +..+ |..++++++|++|+++++.- + ++|++|++++|. ...+......++.+
T Consensus 71 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccC
Confidence 4578888889999998864 4444 77888889999999887641 1 378888888887 32332223455555
Q ss_pred e-eeccCCCCCcc-cCC-Ccc-------ccccCcCCCccC-CCCCCccEEEeeCC
Q 043908 283 N-LMLRSSDLGAL-MLP-SLS-------ELEDCKRLQSQP-QLPPNVTEVRVNGC 326 (462)
Q Consensus 283 ~-L~Ls~n~l~~L-~lP-~l~-------~l~~c~~L~~lp-~l~~sL~~L~~~~C 326 (462)
. |++++|.++.. ..| .++ +++++ .+..+| .++++|++|+++++
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSS
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCC-CCCccCccccCCCCEEECCCC
Confidence 5 88888887621 122 222 34443 245566 35578888888876
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.08 E-value=1.8e-05 Score=78.36 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=17.8
Q ss_pred chhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSG 252 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~ 252 (462)
.++++++|++|++++| .+..+ |..++++++|++|++++
T Consensus 71 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 71 DLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred HhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC
Confidence 4445555555555543 23333 23344555555555544
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.08 E-value=1e-05 Score=80.21 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCC-chhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCC-----------CCCCCccEEEeecCC-CCCCCC-
Q 043908 210 EVPL-SIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGC-----------SKLKNLKALSFRGCN-GPPSSA- 274 (462)
Q Consensus 210 ~iP~-si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c-----------~~L~~L~~L~l~~~~-~~~~~~- 274 (462)
.+|+ .+++|++|++|+|++|..++.+|.. +.++++|+.+.+.++ ..+++|++|++++|. ...+..
T Consensus 44 ~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh
Confidence 4454 4678888888888887656666653 456666665444332 234477888887776 111110
Q ss_pred ----------------cccccCc---------ee-eeccCCCCCcccCC-Cc-c-------ccccCcCCCccCC-C-C--
Q 043908 275 ----------------SCYLLFP---------IN-LMLRSSDLGALMLP-SL-S-------ELEDCKRLQSQPQ-L-P-- 315 (462)
Q Consensus 275 ----------------~~~~lp~---------~~-L~Ls~n~l~~L~lP-~l-~-------~l~~c~~L~~lp~-l-~-- 315 (462)
.+..+|. +. |+|++|+|+ .+| .+ . .+.++..++.+|. . .
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 0111111 11 778888887 555 22 1 5556667777773 1 1
Q ss_pred CCccEEEeeCCCCCeeecc
Q 043908 316 PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 316 ~sL~~L~~~~C~sL~~lp~ 334 (462)
++|++|+++++ .|+++|.
T Consensus 202 ~~L~~LdLs~N-~l~~lp~ 219 (350)
T 4ay9_X 202 SGPVILDISRT-RIHSLPS 219 (350)
T ss_dssp ECCSEEECTTS-CCCCCCS
T ss_pred cccchhhcCCC-CcCccCh
Confidence 56666666664 4555554
No 70
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.08 E-value=6.1e-06 Score=72.64 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=57.5
Q ss_pred cCCCcEEEecCCCCCC--ccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCC-CCCcccccCcee-ee
Q 043908 218 LSGLVQLTLKGCKNLS--SLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPP-SSASCYLLFPIN-LM 285 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~--~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~-~~~~~~~lp~~~-L~ 285 (462)
.++|+.|++++|. +. .+|..++.+++|++|++++|. .+++|++|++++|.-.. .......+|.+. |+
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3689999999975 55 999999999999999999864 45589999999998221 111122366665 99
Q ss_pred ccCCCCCc
Q 043908 286 LRSSDLGA 293 (462)
Q Consensus 286 Ls~n~l~~ 293 (462)
|++|.+++
T Consensus 102 Ls~N~l~~ 109 (168)
T 2ell_A 102 LSGNKLKD 109 (168)
T ss_dssp CBSSSCCS
T ss_pred ccCCccCc
Confidence 99999983
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.08 E-value=1.2e-05 Score=78.72 Aligned_cols=118 Identities=23% Similarity=0.283 Sum_probs=70.7
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--C-----CCCccEEEeecCC-CCCCCCcccccCcee-
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--K-----LKNLKALSFRGCN-GPPSSASCYLLFPIN- 283 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--~-----L~~L~~L~l~~~~-~~~~~~~~~~lp~~~- 283 (462)
..++++++|++|++++|......|..++++++|++|+++++. . .++|++|++++|. ...+......++.+.
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccE
Confidence 367888888888888864433347788888888888888753 1 1378888888876 111111123344444
Q ss_pred eeccCCCCCcc--------cCCCcc--ccccCcCCCccC-CCCCCccEEEeeCCCCCeee
Q 043908 284 LMLRSSDLGAL--------MLPSLS--ELEDCKRLQSQP-QLPPNVTEVRVNGCASLVTL 332 (462)
Q Consensus 284 L~Ls~n~l~~L--------~lP~l~--~l~~c~~L~~lp-~l~~sL~~L~~~~C~sL~~l 332 (462)
|+|++|.++.. .+|.++ +++++ .+..+| .++++|++|++++|. ++.+
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~-l~~~ 207 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNK-ITKV 207 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSC-CCEE
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCc-CCcc
Confidence 77877777521 112222 33333 244455 344778888887764 4444
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=6.3e-06 Score=87.58 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=60.3
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC--CCC-CCCccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN--GPP-SSASCY 277 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~--~~~-~~~~~~ 277 (462)
..+|. ++.+++|++|+|++| .+..+|..+++|++|++|+|+++. ++++|++|++++|. +.. |.. +.
T Consensus 454 ~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~ 530 (567)
T 1dce_A 454 TVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQP-LV 530 (567)
T ss_dssp SSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGG-GG
T ss_pred CCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHH-Hh
Confidence 35676 999999999999985 677999999999999999998753 45578888888776 221 222 44
Q ss_pred ccCcee-eeccCCCCCc
Q 043908 278 LLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~ 293 (462)
.+|.+. |+|++|.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GCTTCCEEECTTSGGGG
T ss_pred cCCCCCEEEecCCcCCC
Confidence 555555 7777777773
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.06 E-value=2e-05 Score=81.36 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=23.2
Q ss_pred eeccCCCCCcccCC----Ccc--ccccCcCCCccCCCCCCccEEEeeCC
Q 043908 284 LMLRSSDLGALMLP----SLS--ELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 284 L~Ls~n~l~~L~lP----~l~--~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
|++++|.++ .+| +++ ++++|. +..+|..+++|++|++++|
T Consensus 242 L~l~~N~l~--~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 242 IYADNNLLK--TLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp EECCSSCCS--SCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred EECCCCcCC--cccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 666666666 333 233 455443 4556666667777777665
No 74
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.06 E-value=1.3e-05 Score=72.59 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCcc--CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPAT--ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSAS 275 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~--i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~ 275 (462)
..+|..+.. +|++|++++| .+..+|.. ++++++|++|+++++. .+++|++|++++|. ...+...
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 455665543 7888888875 66777653 6788888888887753 34477777777776 1111111
Q ss_pred ccccCcee-eeccCCCCCc
Q 043908 276 CYLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 276 ~~~lp~~~-L~Ls~n~l~~ 293 (462)
...++++. |+|++|+|++
T Consensus 98 ~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp STTCTTCCEEECCSSCCCE
T ss_pred hcCCCCCCEEECCCCcCCe
Confidence 23445544 7777777774
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.06 E-value=2.7e-05 Score=80.36 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=38.9
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC-------CCCCccEEEeecCC-CCCCCCcccccCcee-e
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-L 284 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L 284 (462)
.++.+++|++|++++| .+..+| ++.+++|++|+++++. ++++|++|++++|. ...+ ...++.+. |
T Consensus 59 ~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYL 132 (457)
T ss_dssp TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---CCCCCcCCEE
Confidence 4566666666666654 445554 5566666666666542 34456666666655 1111 23334433 5
Q ss_pred eccCCCCC
Q 043908 285 MLRSSDLG 292 (462)
Q Consensus 285 ~Ls~n~l~ 292 (462)
++++|+++
T Consensus 133 ~l~~N~l~ 140 (457)
T 3bz5_A 133 NCARNTLT 140 (457)
T ss_dssp ECTTSCCS
T ss_pred ECCCCccc
Confidence 55555555
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.05 E-value=1.7e-05 Score=73.44 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=71.7
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCc
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
..++.+++|++|+|++|......|..+..+++|++|+|+++. .+++|++|++++|. ...+......+|.
T Consensus 50 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 478999999999999974444448889999999999998853 46699999999998 2222222445666
Q ss_pred ee-eeccCCCCCcccCC-CccccccCcCCCccCCCCCCccEEEeeCC
Q 043908 282 IN-LMLRSSDLGALMLP-SLSELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 282 ~~-L~Ls~n~l~~L~lP-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
+. |+|++|.|+ .+| .. +.. .++|++|++++.
T Consensus 130 L~~L~L~~N~l~--~~~~~~--~~~----------l~~L~~L~L~~N 162 (220)
T 2v9t_B 130 LNLLSLYDNKLQ--TIAKGT--FSP----------LRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSSCCS--CCCTTT--TTT----------CTTCCEEECCSS
T ss_pred CCEEECCCCcCC--EECHHH--HhC----------CCCCCEEEeCCC
Confidence 66 999999888 344 10 111 156777888764
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.04 E-value=9.3e-06 Score=84.69 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=81.6
Q ss_pred CCCCchhccCCCcEEEecCCCCCC--ccCccCCCCCCcCEEeecCCC-----------CCCCccEEEeecCCCCCCCCcc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLS--SLPATISSLKSLRTLELSGCS-----------KLKNLKALSFRGCNGPPSSASC 276 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~--~LP~~i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~~~~~~~~~ 276 (462)
.+|..++.+++|++|++++|...+ .+|..++++++|++|+++++. .+++|++|++++|.-... ..
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~--~~ 416 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT--IF 416 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG--GG
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc--hh
Confidence 368889999999999999975433 567789999999999998754 345899999999972110 01
Q ss_pred ccc-Ccee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCC--CC--CCccEEEeeCCC
Q 043908 277 YLL-FPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQ--LP--PNVTEVRVNGCA 327 (462)
Q Consensus 277 ~~l-p~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~--l~--~sL~~L~~~~C~ 327 (462)
..+ +.+. |+|++|+++ .+| .+. ++++| .++.+|. +. ++|++|++++++
T Consensus 417 ~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 417 RCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 223 2344 999999999 677 443 66665 4667774 32 678888887763
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.02 E-value=1.2e-05 Score=79.08 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=71.7
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccccCcee-ee
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYLLFPIN-LM 285 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~lp~~~-L~ 285 (462)
+..+++|++|++++| .+..++. ++.+++|++|++++|. .+++|++|++++|.-... +....+|++. |+
T Consensus 195 ~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 195 LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLN 271 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEE
Confidence 777888888888875 5555554 6778888888887754 445788888888761111 1134455555 88
Q ss_pred ccCCCCCcc----cCCCcc--ccccCcCCCccCC---CCCCccEEEeeCCCCCeeecc
Q 043908 286 LRSSDLGAL----MLPSLS--ELEDCKRLQSQPQ---LPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 286 Ls~n~l~~L----~lP~l~--~l~~c~~L~~lp~---l~~sL~~L~~~~C~sL~~lp~ 334 (462)
+++|.++.+ .+|.++ ++++|.--...|. -.++|++|++++|. ++.++.
T Consensus 272 l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 272 VGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred ccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 888877732 112222 5555543222221 12788999999886 555544
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.02 E-value=1.4e-05 Score=88.95 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=29.2
Q ss_pred CCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
|.+++++++|++|+|++|.....+ |..++++++|++|+|+++. ++++|++|++++|.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 444555555555555555444444 4445555555555555432 23355555555554
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.02 E-value=8.1e-06 Score=79.50 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCchhccCCCcEEEecCCCCCCc--cCc--cCCCCCCcCEEeecCCC-------------CCCCccEEEeecCC--CCCC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSS--LPA--TISSLKSLRTLELSGCS-------------KLKNLKALSFRGCN--GPPS 272 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~--LP~--~i~~L~~L~~L~l~~c~-------------~L~~L~~L~l~~~~--~~~~ 272 (462)
|..++.+++|++|+|++|...+. +|. .++++++|++|++++|. .+++|++|++++|. +..|
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 56889999999999999754432 433 34689999999999875 22589999999998 3323
Q ss_pred CCccccc---Ccee-eeccCCCCCcccCC-Ccc------ccccCcCCCccCC--CCCCccEEEeeCCC
Q 043908 273 SASCYLL---FPIN-LMLRSSDLGALMLP-SLS------ELEDCKRLQSQPQ--LPPNVTEVRVNGCA 327 (462)
Q Consensus 273 ~~~~~~l---p~~~-L~Ls~n~l~~L~lP-~l~------~l~~c~~L~~lp~--l~~sL~~L~~~~C~ 327 (462)
.. ...+ |.+. |+|++|+|+ .+| .+. +++++ .+..+|. -.++|+.|++++.+
T Consensus 242 ~~-~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PS-APRCMWSSALNSLNLSFAGLE--QVPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC-CSSCCCCTTCCCEECCSSCCC--SCCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred hh-HHhccCcCcCCEEECCCCCCC--chhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 32 2222 4555 999999999 667 443 56655 3455553 22788888887753
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.01 E-value=1.6e-05 Score=82.09 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=58.6
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC-------CCCCccEEEeecCC-CCCCCCcccccCcee-ee
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LM 285 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~ 285 (462)
++.+++|++|++++| .+..+| ++.+++|+.|+++++. .+++|++|++++|. ..+| ...+|.+. |+
T Consensus 166 ~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~ 239 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFD 239 (457)
T ss_dssp CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEE
T ss_pred cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC---ccccCCCCEEE
Confidence 556666666666664 455565 5566666666666543 34466667776665 1122 23344444 66
Q ss_pred ccCCCCCcc---cCCCcc------------ccccCcCCCccCCC-CCCccEEEeeCCCCCeeec
Q 043908 286 LRSSDLGAL---MLPSLS------------ELEDCKRLQSQPQL-PPNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 286 Ls~n~l~~L---~lP~l~------------~l~~c~~L~~lp~l-~~sL~~L~~~~C~sL~~lp 333 (462)
+++|.++++ .+|.+. ++++|..++.+|.- .++|+.|++++|..++.+|
T Consensus 240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 666666632 111111 34444444444421 1555666666655555554
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=1.7e-05 Score=84.65 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=44.8
Q ss_pred CchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
..++.+++|++|+|++|. +..+|. .++++++|++|+|++|. ++++|++|++++|. ...+......++
T Consensus 93 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 366666777777777653 344433 34666777777776642 34466777777665 111111133444
Q ss_pred cee-eeccCCCCCc
Q 043908 281 PIN-LMLRSSDLGA 293 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~ 293 (462)
++. |+|++|.+++
T Consensus 172 ~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 172 SLQNLQLSSNRLTH 185 (597)
T ss_dssp TCCEEECTTSCCSB
T ss_pred cCcEEECcCCCCCC
Confidence 444 7777776663
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.01 E-value=2.2e-05 Score=74.82 Aligned_cols=54 Identities=30% Similarity=0.386 Sum_probs=27.8
Q ss_pred chhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
.++++++|++|++++| .+..+|. .++++++|++|+++++. ++++|++|++++|.
T Consensus 47 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 47 SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp TTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred HhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 4555555666666554 3334332 45555555555555432 23355555555554
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.01 E-value=1.9e-05 Score=83.96 Aligned_cols=80 Identities=28% Similarity=0.377 Sum_probs=53.0
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCC--CCCCCcccccC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNG--PPSSASCYLLF 280 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~--~~~~~~~~~lp 280 (462)
..++.+++|++|++++| .+..+|..++++++|++|++++|. ++++|++|++++|.. ..+......+|
T Consensus 272 ~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 34778888888888875 667888888888888888887754 344778888877752 22322233445
Q ss_pred cee-eeccCCCCCc
Q 043908 281 PIN-LMLRSSDLGA 293 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~ 293 (462)
.+. |++++|.+++
T Consensus 351 ~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 351 NLRELDLSHDDIET 364 (606)
T ss_dssp TCCEEECCSSCCCE
T ss_pred cCCEEECCCCcccc
Confidence 444 6666666553
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.99 E-value=2.5e-05 Score=74.41 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=60.4
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCC--C-----CCccEEEeecCCCCCCCCcccccCce
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSK--L-----KNLKALSFRGCNGPPSSASCYLLFPI 282 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~--L-----~~L~~L~l~~~~~~~~~~~~~~lp~~ 282 (462)
++| .++.+++|++|++++| .+..+|. ++++++|++|+++++.- + .+|++|++++|.-... +....++.+
T Consensus 55 ~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~-~~l~~l~~L 130 (263)
T 1xeu_A 55 SLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNL 130 (263)
T ss_dssp CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBS-GGGTTCTTC
T ss_pred cch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCC-hhhcCcccc
Confidence 455 7889999999999985 7788887 89999999999998641 1 3799999999971111 113455555
Q ss_pred e-eeccCCCCCc
Q 043908 283 N-LMLRSSDLGA 293 (462)
Q Consensus 283 ~-L~Ls~n~l~~ 293 (462)
. |+|++|++++
T Consensus 131 ~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 131 EILSIRNNKLKS 142 (263)
T ss_dssp CEEECTTSCCCB
T ss_pred cEEECCCCcCCC
Confidence 5 9999998883
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.99 E-value=2.5e-05 Score=78.40 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=40.2
Q ss_pred chhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCc
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFP 281 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~ 281 (462)
.++.+++|++|++++|. +..+ |..++++++|++|+++++. ++++|++|++++|. ...+......+++
T Consensus 88 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 55666666666666643 3333 3345566666666665532 33456666666665 1111111233444
Q ss_pred ee-eeccCCCCC
Q 043908 282 IN-LMLRSSDLG 292 (462)
Q Consensus 282 ~~-L~Ls~n~l~ 292 (462)
+. |+|++|.++
T Consensus 167 L~~L~l~~n~l~ 178 (390)
T 3o6n_A 167 LQNLQLSSNRLT 178 (390)
T ss_dssp CCEEECCSSCCS
T ss_pred CCEEECCCCcCC
Confidence 44 666666666
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.98 E-value=2.9e-05 Score=82.46 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=13.8
Q ss_pred cCCCcEEEecCCCCCCccCccCCCCCCcCEEeecC
Q 043908 218 LSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~ 252 (462)
+++|++|++++| .+..+|. +++ +|++|++++
T Consensus 99 l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 99 PASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred cCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 444445555443 3333444 333 444444444
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.98 E-value=1e-05 Score=84.31 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC-----CCCCccEEEeecCC-CCCCCCcccccCcee-e
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-----KLKNLKALSFRGCN-GPPSSASCYLLFPIN-L 284 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-----~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L 284 (462)
|..++.+++|++|+|++| .+..+++ ++.+++|++|++++|. ..++|++|++++|. ...+ ...+|.+. |
T Consensus 51 ~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~---~~~l~~L~~L 125 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS---CSRGQGKKNI 125 (487)
T ss_dssp GGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEE---ECCCSSCEEE
T ss_pred HHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCC---ccccCCCCEE
Confidence 467899999999999986 4555554 8899999999998864 23467777777776 1111 11234433 6
Q ss_pred eccCCCCCc
Q 043908 285 MLRSSDLGA 293 (462)
Q Consensus 285 ~Ls~n~l~~ 293 (462)
+|++|.+++
T Consensus 126 ~L~~N~l~~ 134 (487)
T 3oja_A 126 YLANNKITM 134 (487)
T ss_dssp ECCSSCCCS
T ss_pred ECCCCCCCC
Confidence 666666664
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.97 E-value=7.5e-06 Score=89.57 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCcccccC
Q 043908 211 VPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 211 iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
.|..+..+.+|+.|+|++| .+..+|..++++++|++|+|+++. +|++|++|+|++|. ..+|.. +..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS-GGGGT
T ss_pred ChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh-hcCCC
Confidence 3678899999999999986 577999999999999999999864 44589999999988 333332 34555
Q ss_pred cee-eeccCCCCCcccCC-Ccc
Q 043908 281 PIN-LMLRSSDLGALMLP-SLS 300 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~L~lP-~l~ 300 (462)
.+. |+|++|.|+ .+| .++
T Consensus 294 ~L~~L~L~~N~l~--~lp~~~~ 313 (727)
T 4b8c_D 294 QLKYFYFFDNMVT--TLPWEFG 313 (727)
T ss_dssp TCSEEECCSSCCC--CCCSSTT
T ss_pred CCCEEECCCCCCC--ccChhhh
Confidence 555 888888888 677 543
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.97 E-value=9.3e-06 Score=69.94 Aligned_cols=81 Identities=25% Similarity=0.268 Sum_probs=58.4
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCCCC-CC-Cccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGPP-SS-ASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~~-~~-~~~~ 277 (462)
.+|..++.+++|++|++++| .+..+ ..++++++|++|++++|. .+++|++|++++|.-.. +. ....
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 67888899999999999996 66777 678899999999998865 24478888888877111 10 1233
Q ss_pred ccCcee-eeccCCCCC
Q 043908 278 LLFPIN-LMLRSSDLG 292 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~ 292 (462)
.+|.+. |++++|.++
T Consensus 111 ~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 111 KLENLKSLDLFNCEVT 126 (149)
T ss_dssp GCTTCCEEECTTCGGG
T ss_pred hCCCCCEEeCcCCccc
Confidence 444444 777777666
No 91
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.97 E-value=2e-05 Score=71.42 Aligned_cols=84 Identities=25% Similarity=0.302 Sum_probs=63.3
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
..+|..++.+++|++|+|++| .+..+| ..+..+++|++|+|+++. .+++|++|++++|. ...+....
T Consensus 44 ~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 44 TLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp CSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred chhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 467889999999999999996 566665 568899999999998853 45699999999998 22332223
Q ss_pred cccCcee-eeccCCCCCc
Q 043908 277 YLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~ 293 (462)
..++.+. |+|++|.+.+
T Consensus 123 ~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 123 NDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred hcCccccEEEeCCCCeec
Confidence 3455544 7888877764
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.96 E-value=1.9e-05 Score=71.96 Aligned_cols=82 Identities=32% Similarity=0.387 Sum_probs=60.5
Q ss_pred CCCC-chhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 210 EVPL-SIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 210 ~iP~-si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
.+|+ .++.+++|++|++++| .+..+|.. +..+++|++|+++++. .+++|++|++++|. ...+....
T Consensus 42 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 120 (208)
T 2o6s_A 42 SLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120 (208)
T ss_dssp CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh
Confidence 4444 4688999999999985 66777765 5789999999998753 45589999999987 22232223
Q ss_pred cccCcee-eeccCCCCC
Q 043908 277 YLLFPIN-LMLRSSDLG 292 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~ 292 (462)
..+|.+. |+|++|.++
T Consensus 121 ~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred ccCCcCCEEECCCCccc
Confidence 4556655 899998888
No 93
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.96 E-value=2.2e-05 Score=70.99 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCCC--chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC--CCCCCCc
Q 043908 210 EVPL--SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN--GPPSSAS 275 (462)
Q Consensus 210 ~iP~--si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~--~~~~~~~ 275 (462)
.+|+ .++.+++|++|+|++|...+..|..++.+++|++|+|+++. .+++|++|++++|. +..|. .
T Consensus 43 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~ 121 (192)
T 1w8a_A 43 RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-S 121 (192)
T ss_dssp SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-S
T ss_pred ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-H
Confidence 4454 38999999999999975444448889999999999998853 56699999999998 22222 2
Q ss_pred ccccCcee-eeccCCCCCc
Q 043908 276 CYLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 276 ~~~lp~~~-L~Ls~n~l~~ 293 (462)
...+|.+. |+|++|.+.+
T Consensus 122 ~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp STTCTTCCEEECTTCCBCC
T ss_pred hhcCCCCCEEEeCCCCccC
Confidence 44566665 9999999887
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.96 E-value=3.3e-05 Score=71.84 Aligned_cols=99 Identities=24% Similarity=0.300 Sum_probs=71.9
Q ss_pred CCchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLL 279 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~l 279 (462)
|..++.+++|++|+|++| .+..+|.. +..+++|++|+|+++. .+.+|++|++++|. ..+|.. ...+
T Consensus 57 ~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l 134 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERL 134 (229)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGC
T ss_pred HHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccC
Confidence 677899999999999996 67888865 5799999999999853 45599999999998 333322 3445
Q ss_pred Ccee-eeccCCCCCcccCC-CccccccCcCCCccCCCCCCccEEEeeCC
Q 043908 280 FPIN-LMLRSSDLGALMLP-SLSELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 280 p~~~-L~Ls~n~l~~L~lP-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
+.+. |+|++|+|+ .+| .. +.. .++|+.|++.++
T Consensus 135 ~~L~~L~L~~N~l~--~~~~~~--~~~----------l~~L~~L~l~~N 169 (229)
T 3e6j_A 135 THLTHLALDQNQLK--SIPHGA--FDR----------LSSLTHAYLFGN 169 (229)
T ss_dssp TTCSEEECCSSCCC--CCCTTT--TTT----------CTTCCEEECTTS
T ss_pred CCCCEEECCCCcCC--ccCHHH--HhC----------CCCCCEEEeeCC
Confidence 5555 888888888 444 11 111 156777888765
No 95
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.96 E-value=2.6e-05 Score=77.16 Aligned_cols=80 Identities=28% Similarity=0.273 Sum_probs=38.3
Q ss_pred CchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC-----------CCCCccEEEeecCC--CCCCCCcccc
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS-----------KLKNLKALSFRGCN--GPPSSASCYL 278 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~--~~~~~~~~~~ 278 (462)
..++.+++|++|++++| .+..+|.. ++++++|++|+++++. ++++|++|++++|. ...+......
T Consensus 94 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 34555556666666553 44455544 4555566666655431 23355556665553 1111111223
Q ss_pred cCcee-eeccCCCCCc
Q 043908 279 LFPIN-LMLRSSDLGA 293 (462)
Q Consensus 279 lp~~~-L~Ls~n~l~~ 293 (462)
++.+. |++++|.+++
T Consensus 173 l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 173 LTFLEELEIDASDLQS 188 (353)
T ss_dssp CCEEEEEEEEETTCCE
T ss_pred CCCCCEEECCCCCcCc
Confidence 33333 5555555553
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.96 E-value=1.1e-05 Score=71.86 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=59.8
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCC-CcCEEeecCCC--------CCCCccEEEeecCC-CCCCCCcccccCcee
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLK-SLRTLELSGCS--------KLKNLKALSFRGCN-GPPSSASCYLLFPIN 283 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~-~L~~L~l~~c~--------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~ 283 (462)
.+.++.+|+.|++++| .+..+|. ++.+. +|++|+++++. .+++|++|++++|. ...|......+|.+.
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3455667888888875 5666754 44444 78888887753 34477777777776 111211113445544
Q ss_pred -eeccCCCCCcccCCCccccccCcCCCccCCCCCCccEEEeeCCCCCeeec
Q 043908 284 -LMLRSSDLGALMLPSLSELEDCKRLQSQPQLPPNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 284 -L~Ls~n~l~~L~lP~l~~l~~c~~L~~lp~l~~sL~~L~~~~C~sL~~lp 333 (462)
|+|++|.++ .+|.+..+.++ ++|+.|++++++ +..+|
T Consensus 92 ~L~L~~N~i~--~~~~~~~l~~l----------~~L~~L~l~~N~-i~~~~ 129 (176)
T 1a9n_A 92 ELILTNNSLV--ELGDLDPLASL----------KSLTYLCILRNP-VTNKK 129 (176)
T ss_dssp EEECCSCCCC--CGGGGGGGGGC----------TTCCEEECCSSG-GGGST
T ss_pred EEECCCCcCC--cchhhHhhhcC----------CCCCEEEecCCC-CCCcH
Confidence 777777776 44422122222 556677777653 33444
No 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.96 E-value=2.4e-05 Score=83.05 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGC 253 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c 253 (462)
|..++++++|++|+|++|......|..++++++|++|+++++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 344555555555555554333333444555555555555543
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.96 E-value=2.6e-05 Score=84.05 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=77.2
Q ss_pred CCchhccCCCcEEEecCCCC--CCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCC-CC-----C-
Q 043908 212 PLSIEHLSGLVQLTLKGCKN--LSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNG-PP-----S- 272 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~--l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~-~~-----~- 272 (462)
|..++.+++|++|++++|.. ++.+|..++++++|++|+++++. .+++|++|++++|.- .. |
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 56777888888888887642 35678888888888888887753 445788888888861 10 1
Q ss_pred --CCcccccCcee-eeccCCCCCcccCC--Ccc--------ccccCcCCCccCCC--C--CCccEEEeeCCCCCeeecc
Q 043908 273 --SASCYLLFPIN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQSQPQL--P--PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 273 --~~~~~~lp~~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~~lp~l--~--~sL~~L~~~~C~sL~~lp~ 334 (462)
......++.+. |+|++|+++ .+| .++ ++++ .+++.+|.- . ++|+.|+++++ .|+.++.
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred CcchhhcCCCCCCEEECCCCCCC--CCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence 00123344544 888888888 555 232 4433 245566632 1 78899999887 5666654
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.95 E-value=2.5e-05 Score=86.87 Aligned_cols=114 Identities=19% Similarity=0.130 Sum_probs=79.5
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC------------CCCCccEEEeecCC--CCCCCCccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS------------KLKNLKALSFRGCN--GPPSSASCY 277 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~------------~L~~L~~L~l~~~~--~~~~~~~~~ 277 (462)
|..++++++|++|+|++|......|..++++++|++|+|++|. ++++|++|++++|. +..+.....
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 6789999999999999975555558899999999999998753 45589999999998 332322345
Q ss_pred ccCcee-eeccCCCCCcccCC-Ccc----------ccccCcCCCccCC-C---C-----CCccEEEeeCC
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLS----------ELEDCKRLQSQPQ-L---P-----PNVTEVRVNGC 326 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~----------~l~~c~~L~~lp~-l---~-----~sL~~L~~~~C 326 (462)
.++++. |+|++|.+++ ..| .+. +++++..-...|. + + .+|+.|++++|
T Consensus 146 ~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp TCSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred hCCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 667666 9999998886 333 332 3444433333331 1 0 24888998887
No 100
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.94 E-value=7.5e-05 Score=66.18 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=61.1
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
.+|..+ .++|++|++++| .+..+|.. ++++++|++|+++++. .+++|++|++++|. ...+.....
T Consensus 21 ~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 21 SVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp SCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence 455443 368899999985 56667654 5788899999888753 34477777777776 222222123
Q ss_pred ccCcee-eeccCCCCCcccCC-CccccccCcCCCccCCCCCCccEEEeeCCC
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLSELEDCKRLQSQPQLPPNVTEVRVNGCA 327 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C~ 327 (462)
.++.+. |+|++|+++ .+| .+ +.+ .++|++|++++++
T Consensus 98 ~l~~L~~L~l~~N~l~--~~~~~~--~~~----------l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 KLTQLKELALDTNQLK--SVPDGI--FDR----------LTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSCCS--CCCTTT--TTT----------CTTCCEEECCSSC
T ss_pred CCcccCEEECcCCcce--EeCHHH--hcC----------CcccCEEEecCCC
Confidence 344444 666666666 333 11 011 1567778887763
No 101
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.94 E-value=2.5e-05 Score=75.52 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=45.4
Q ss_pred CCCCc-hhccCCCcEEEecCCCCCCcc---CccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC--CCCCCC
Q 043908 210 EVPLS-IEHLSGLVQLTLKGCKNLSSL---PATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN--GPPSSA 274 (462)
Q Consensus 210 ~iP~s-i~~L~~L~~L~l~~c~~l~~L---P~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~--~~~~~~ 274 (462)
.+|.. ++++++|++|++++| .+..+ |..+..+++|++|+++++. .+++|++|++++|. +..+..
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~ 120 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTT
T ss_pred ccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccch
Confidence 44543 466677777777764 33333 4555566667777766643 34467777776665 111111
Q ss_pred cccccCcee-eeccCCCCCc
Q 043908 275 SCYLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 275 ~~~~lp~~~-L~Ls~n~l~~ 293 (462)
....++.+. |+|++|.+++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEE
T ss_pred hhhhccCCCEEECCCCcCCc
Confidence 233444444 6777666654
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=1.1e-05 Score=89.71 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=16.5
Q ss_pred chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSG 252 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~ 252 (462)
.++++++|++|+|++| .+..+| .++++++|++|++++
T Consensus 568 ~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp HHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCS
T ss_pred hhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcC
Confidence 4444444444444443 223444 444444444444444
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.93 E-value=2.8e-05 Score=77.49 Aligned_cols=110 Identities=21% Similarity=0.190 Sum_probs=52.8
Q ss_pred CCcEEEecCCCCCCccCccC-C-CCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCcee-ee
Q 043908 220 GLVQLTLKGCKNLSSLPATI-S-SLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LM 285 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i-~-~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~ 285 (462)
.+++|+|++| .+..+|... . ++++|++|+|+++. ++++|++|+|++|. ...+......++.+. |+
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3556666653 444444432 2 55666666665432 33356666666555 111111122333333 56
Q ss_pred ccCCCCCcccCC-Ccc--------ccccCcCCCccCC-------CCCCccEEEeeCCCCCeeec
Q 043908 286 LRSSDLGALMLP-SLS--------ELEDCKRLQSQPQ-------LPPNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 286 Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~-------l~~sL~~L~~~~C~sL~~lp 333 (462)
|++|+|+.+ .| .+. +|+++ .+..+|. -.++|+.|+++++ .++.+|
T Consensus 119 L~~N~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 119 LYNNHIVVV-DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp CCSSCCCEE-CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred CCCCcccEE-CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 666655531 11 221 33332 2334441 1378888999875 566665
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.93 E-value=3.5e-05 Score=68.69 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCC
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGC 253 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c 253 (462)
..+|..+. ++|++|+|++| .+..+ |..++++++|++|+|+++
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC
Confidence 45666554 67888888875 44555 556777777777777764
No 105
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.92 E-value=3.2e-05 Score=79.04 Aligned_cols=75 Identities=24% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCcee-eec
Q 043908 219 SGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LML 286 (462)
Q Consensus 219 ~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~L 286 (462)
++|++|++++|...+..|..++++++|++|+++++. .+++|++|++++|. ...+......++.+. |+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 567777777765555566677777777777777653 34477777777776 111111123344444 777
Q ss_pred cCCCCCc
Q 043908 287 RSSDLGA 293 (462)
Q Consensus 287 s~n~l~~ 293 (462)
++|++++
T Consensus 355 s~N~l~~ 361 (455)
T 3v47_A 355 SYNHIRA 361 (455)
T ss_dssp CSSCCCE
T ss_pred CCCcccc
Confidence 7777764
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.90 E-value=4.5e-05 Score=80.96 Aligned_cols=111 Identities=24% Similarity=0.312 Sum_probs=72.2
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--CCC----CccEEEeecCC-CCCCCCcccccCce
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--KLK----NLKALSFRGCN-GPPSSASCYLLFPI 282 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--~L~----~L~~L~l~~~~-~~~~~~~~~~lp~~ 282 (462)
.+|..+. ++|++|+|++| .+..+| +.+++|++|+++++. .++ +|++|++++|. ..+|. .++++
T Consensus 73 ~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~----~l~~L 142 (571)
T 3cvr_A 73 SLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE----LPALL 142 (571)
T ss_dssp CCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred ccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC----cCccc
Confidence 4666653 78999999985 677888 457889999998753 111 78888888887 22221 23334
Q ss_pred e-eeccCCCCCcccCC----Ccc--ccccCcCCCccCCCCCCccEEEeeCCCCCeeecc
Q 043908 283 N-LMLRSSDLGALMLP----SLS--ELEDCKRLQSQPQLPPNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 283 ~-L~Ls~n~l~~L~lP----~l~--~l~~c~~L~~lp~l~~sL~~L~~~~C~sL~~lp~ 334 (462)
. |+|++|.|+ .+| ++. ++++| .+..+|.++++|++|++++| .|+.+|.
T Consensus 143 ~~L~Ls~N~l~--~lp~~l~~L~~L~Ls~N-~L~~lp~l~~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 143 EYINADNNQLT--MLPELPTSLEVLSVRNN-QLTFLPELPESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp CEEECCSSCCS--CCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred cEEeCCCCccC--cCCCcCCCcCEEECCCC-CCCCcchhhCCCCEEECcCC-CCCchhh
Confidence 4 788888877 455 232 55555 35556665577777777765 4555554
No 107
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.90 E-value=4.4e-05 Score=67.63 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=36.5
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
..+|..+. ++|++|+|++| .+..+ |..++++++|++|+|+++. .+++|++|++++|.
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 35666553 77888888875 55555 5667788888888887642 23355555555554
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.90 E-value=2.6e-05 Score=76.75 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=74.4
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC-CCCCCCcccccC
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
++| .++.+++|++|++++| .+..+|. +..+++|++|++++|. ++++|++|++++|. ...+. ...+|
T Consensus 58 ~~~-~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~ 132 (347)
T 4fmz_A 58 SIQ-GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLT 132 (347)
T ss_dssp CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCT
T ss_pred cch-hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCC
Confidence 344 4888999999999986 6777877 8889999999998864 45588999998887 11111 34455
Q ss_pred cee-eeccCCCCCcccCCC------cc--ccccCcCCCccCCCC--CCccEEEeeCCCCCeeec
Q 043908 281 PIN-LMLRSSDLGALMLPS------LS--ELEDCKRLQSQPQLP--PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~L~lP~------l~--~l~~c~~L~~lp~l~--~sL~~L~~~~C~sL~~lp 333 (462)
.+. |++++|.... .+|. ++ ++++|. +..++.+. ++|++|++++|. ++.++
T Consensus 133 ~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 193 (347)
T 4fmz_A 133 KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQ-IEDIS 193 (347)
T ss_dssp TCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSC-CCCCG
T ss_pred ceeEEECCCCCCcc-cccchhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCc-ccccc
Confidence 555 8888874332 3332 22 444443 23333222 788888888763 44444
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.89 E-value=2.7e-05 Score=80.22 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=41.6
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC-CCCCCCcccccCcee-e
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-L 284 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L 284 (462)
++.+++|++|++++| .+..+|. ++++++|++|++++|. ++++|++|++++|. ...+ ....+|.+. |
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEE
Confidence 566666777777664 4555555 6666667777666543 34466666666665 1111 123344444 6
Q ss_pred eccCCCCC
Q 043908 285 MLRSSDLG 292 (462)
Q Consensus 285 ~Ls~n~l~ 292 (462)
+|++|.++
T Consensus 140 ~l~~n~l~ 147 (466)
T 1o6v_A 140 ELSSNTIS 147 (466)
T ss_dssp EEEEEEEC
T ss_pred ECCCCccC
Confidence 66665555
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.88 E-value=3.7e-06 Score=82.37 Aligned_cols=117 Identities=23% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCCCCC------------CccEEEeecCCCCCCC---Cc
Q 043908 211 VPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCSKLK------------NLKALSFRGCNGPPSS---AS 275 (462)
Q Consensus 211 iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~~L~------------~L~~L~l~~~~~~~~~---~~ 275 (462)
+|..++.+++|++|++++|......|..++++++|++|++++|..+. +|++|++++|...... ..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 34456667777777777765444566666777777777777764332 6777777777322110 01
Q ss_pred ccccC-cee-eeccCC--CCCc--c-----cCCCcc--ccccCcCCCc--cCCCC--CCccEEEeeCCC
Q 043908 276 CYLLF-PIN-LMLRSS--DLGA--L-----MLPSLS--ELEDCKRLQS--QPQLP--PNVTEVRVNGCA 327 (462)
Q Consensus 276 ~~~lp-~~~-L~Ls~n--~l~~--L-----~lP~l~--~l~~c~~L~~--lp~l~--~sL~~L~~~~C~ 327 (462)
...+| ++. |+|++| .++. + .+|.++ ++++|..+.. ++.+. ++|++|++++|.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 23455 444 777776 3331 0 233333 5556554331 12222 677777777775
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.88 E-value=1.8e-05 Score=77.29 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=11.3
Q ss_pred CCccEEEeeCCCCCeeecc
Q 043908 316 PNVTEVRVNGCASLVTLLG 334 (462)
Q Consensus 316 ~sL~~L~~~~C~sL~~lp~ 334 (462)
++|++|++++| .++.+|.
T Consensus 214 ~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 214 AGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp TTCSEEECTTS-CCCEECT
T ss_pred CcccEEECcCC-cccchhh
Confidence 56677777665 4555654
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.87 E-value=7.3e-05 Score=77.00 Aligned_cols=52 Identities=29% Similarity=0.453 Sum_probs=30.2
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCC
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCN 268 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~ 268 (462)
++.+++|++|++++| .+..+| .++.+++|++|++++|. .+++|++|++++|.
T Consensus 217 ~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 217 LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc
Confidence 556666666666664 344443 35566666666666543 33456666666655
No 113
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.87 E-value=6.5e-05 Score=73.49 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=78.1
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCCC---CCCCcccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGP---PSSASCYL 278 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~---~~~~~~~~ 278 (462)
|..++.+++|++|++++| .+..+|..+. ++|++|+++++. ++++|++|++++|.-. ........
T Consensus 93 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred HHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 778999999999999985 6788998775 789999998863 4568999999988721 11112344
Q ss_pred cCcee-eeccCCCCCcccCC-C----cc--ccccCcCCCccC-C-CC--CCccEEEeeCCCCCeeec
Q 043908 279 LFPIN-LMLRSSDLGALMLP-S----LS--ELEDCKRLQSQP-Q-LP--PNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 279 lp~~~-L~Ls~n~l~~L~lP-~----l~--~l~~c~~L~~lp-~-l~--~sL~~L~~~~C~sL~~lp 333 (462)
++.+. |++++|.++ .+| . ++ +++++. +..++ . +. ++|++|++++|. ++.++
T Consensus 170 l~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 232 (330)
T 1xku_A 170 MKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVD 232 (330)
T ss_dssp CTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEEC
T ss_pred CCCcCEEECCCCccc--cCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeC
Confidence 55555 888888888 455 3 22 555553 33332 1 21 678888887764 44443
No 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.84 E-value=4.3e-05 Score=75.36 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=63.0
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
..+|. ++.+++|++|+|++++.+..+| ..+++|++|++|+|+++. +|++|++|+|++|. ...|....
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 46898 9999999999999756788887 568899999999999853 46689999999998 22332212
Q ss_pred cccCcee-eeccCCCCCc
Q 043908 277 YLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~ 293 (462)
..++ +. |+|.+|.|.+
T Consensus 101 ~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCC-CCEEECCSSCCCC
T ss_pred ccCC-ceEEEeeCCCccC
Confidence 2222 33 8999998885
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.83 E-value=2.1e-05 Score=81.82 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCCchhccC----CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCCCCCCcccc
Q 043908 211 VPLSIEHLS----GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGPPSSASCYL 278 (462)
Q Consensus 211 iP~si~~L~----~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~~~~~~~~~ 278 (462)
+|..+..+. +|++|+|++|......|..++.+++|++|+|++|. .+++|++|++++|. +..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-------l~~ 94 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-------VQE 94 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-------EEE
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-------CCC
Confidence 344444444 89999999974444445789999999999999865 56699999999997 233
Q ss_pred c---Ccee-eeccCCCCCcc---cCCCcc--ccccCcCCCccCC-C--CCCccEEEeeCCC
Q 043908 279 L---FPIN-LMLRSSDLGAL---MLPSLS--ELEDCKRLQSQPQ-L--PPNVTEVRVNGCA 327 (462)
Q Consensus 279 l---p~~~-L~Ls~n~l~~L---~lP~l~--~l~~c~~L~~lp~-l--~~sL~~L~~~~C~ 327 (462)
+ |.+. |+|++|.++++ .+|.+. ++++|.--...|. + .++|++|+++++.
T Consensus 95 l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 3 3333 99999999953 222333 5555543322232 1 2677888887763
No 116
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.80 E-value=5.8e-05 Score=79.28 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=18.2
Q ss_pred chhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGC 253 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c 253 (462)
.+..+++|++|++++| .+..+| ..++++++|++|+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 47 SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred HhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCC
Confidence 4445555555555554 233332 33445555555555443
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.80 E-value=7.4e-05 Score=74.03 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=80.5
Q ss_pred CCchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCCCCC------------CccEEEeecCC-CCCCCCccc
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCSKLK------------NLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~~L~------------~L~~L~l~~~~-~~~~~~~~~ 277 (462)
|..++.+++|++|++++| .+..+|. ......++..|++.++.++. .|+.|++++|. ..++.. .+
T Consensus 97 ~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f 174 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AF 174 (350)
T ss_dssp TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SS
T ss_pred chhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hc
Confidence 456788888888888875 5666654 33455667777776655433 57788888887 222221 12
Q ss_pred ccCcee-eeccC-CCCCcccCC-C-cc--------ccccCcCCCccCC-CCCCccEEEeeCCCCCeeeccccccCC
Q 043908 278 LLFPIN-LMLRS-SDLGALMLP-S-LS--------ELEDCKRLQSQPQ-LPPNVTEVRVNGCASLVTLLGALKLRK 340 (462)
Q Consensus 278 ~lp~~~-L~Ls~-n~l~~L~lP-~-l~--------~l~~c~~L~~lp~-l~~sL~~L~~~~C~sL~~lp~~~~~~~ 340 (462)
..+++. |++++ |.++ .+| . ++ +++++ .++.+|. ...+|+.|.+.+|.+|+++|....+..
T Consensus 175 ~~~~L~~l~l~~~n~l~--~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~ 247 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVA 247 (350)
T ss_dssp TTEEEEEEECTTCTTCC--CCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCS
T ss_pred cccchhHHhhccCCccc--CCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcC
Confidence 223333 77775 6677 666 2 33 56655 5778874 458899999999999999987544433
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.79 E-value=6e-05 Score=79.87 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=19.4
Q ss_pred CCchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSG 252 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~ 252 (462)
+..+..+++|+.+++.++......|. .+..+.+|+.+++++
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred cccccccccccchhhhhccccccccccccccccccccccccc
Confidence 34445555555555555443333322 233455555555544
No 119
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.79 E-value=6.8e-05 Score=78.71 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=76.2
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCcc-CccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSL-PATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~L-P~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
..+|..+. +++++|++++| .+..+ |..++++++|++|++++|. ++++|++|++++|. ...+....
T Consensus 20 ~~ip~~l~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 20 YKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp SSCCSSSC--SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCcc--ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 46676553 57999999996 55666 4578999999999999874 45599999999997 22222224
Q ss_pred cccCcee-eeccCCCCCcccCC--Ccc--------ccccCcCCC-ccCC-CC--CCccEEEeeCCC
Q 043908 277 YLLFPIN-LMLRSSDLGALMLP--SLS--------ELEDCKRLQ-SQPQ-LP--PNVTEVRVNGCA 327 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~L~lP--~l~--------~l~~c~~L~-~lp~-l~--~sL~~L~~~~C~ 327 (462)
..++++. |+|++|+++ .+| .++ ++++|.--. .+|. +. ++|++|++++|.
T Consensus 97 ~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTCTTCCEEECTTSCCC--CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCccccccccccccccc--cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 4556655 999998888 444 222 444433211 2442 22 788888888763
No 120
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.77 E-value=8.4e-05 Score=80.07 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=75.3
Q ss_pred CCCC-chhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 210 EVPL-SIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 210 ~iP~-si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
.+|+ .++++++|++|++++|...+..|..++++++|++|+++++. ++++|++|++++|. ...+.....
T Consensus 39 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 118 (680)
T 1ziw_A 39 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118 (680)
T ss_dssp CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTT
T ss_pred CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcc
Confidence 3443 58889999999999875544456777889999999998753 45589999999887 222222244
Q ss_pred ccCcee-eeccCCCCCcccCC-Ccc--------ccccCcCCCccCC----C--CCCccEEEeeCC
Q 043908 278 LLFPIN-LMLRSSDLGALMLP-SLS--------ELEDCKRLQSQPQ----L--PPNVTEVRVNGC 326 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~L~lP-~l~--------~l~~c~~L~~lp~----l--~~sL~~L~~~~C 326 (462)
.++++. |+|++|.+++ ..| .++ +++++. +..++. . .++|++|++++|
T Consensus 119 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 119 KQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp TCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence 566665 8999988885 333 332 333332 233331 1 167899999887
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.76 E-value=9.2e-05 Score=65.58 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=63.1
Q ss_pred CCCC-chhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcc
Q 043908 210 EVPL-SIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASC 276 (462)
Q Consensus 210 ~iP~-si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~ 276 (462)
.+|+ .++.+++|++|++++| .+..+|.. ++.+++|++|+++++. .+++|++|++++|. ...|....
T Consensus 42 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 120 (177)
T 2o6r_A 42 SLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120 (177)
T ss_dssp CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred EeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence 4454 4689999999999986 67778765 5899999999998853 45699999999998 33333323
Q ss_pred cccCcee-eeccCCCCCc
Q 043908 277 YLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~ 293 (462)
..++.+. |+|++|.+.+
T Consensus 121 ~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred cCCcccCEEEecCCCeec
Confidence 4466655 9999999886
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.75 E-value=5.7e-05 Score=69.81 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=72.0
Q ss_pred CchhccCCCcEEEecCCCCCCccCc-cCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccC
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPA-TISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~-~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
..++.+++|++|+|++| .+..+|. .++.+++|++|+|+++. .+++|++|++++|. ...+......++
T Consensus 51 ~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 51 GIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp CCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred hhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence 34799999999999986 5666765 78999999999999854 56699999999998 222222244556
Q ss_pred cee-eeccCCCCCcccCC-CccccccCcCCCccCCCCCCccEEEeeCCC
Q 043908 281 PIN-LMLRSSDLGALMLP-SLSELEDCKRLQSQPQLPPNVTEVRVNGCA 327 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~L~lP-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C~ 327 (462)
.+. |+|++|+|++ ..| .+ ..+ ++|++|++++++
T Consensus 130 ~L~~L~L~~N~l~~-~~~~~~---~~l----------~~L~~L~L~~N~ 164 (220)
T 2v70_A 130 SVRLLSLYDNQITT-VAPGAF---DTL----------HSLSTLNLLANP 164 (220)
T ss_dssp TCSEEECTTSCCCC-BCTTTT---TTC----------TTCCEEECCSCC
T ss_pred cCCEEECCCCcCCE-ECHHHh---cCC----------CCCCEEEecCcC
Confidence 655 9999999984 223 32 111 567788888753
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.73 E-value=6.1e-06 Score=80.83 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=85.2
Q ss_pred CCCCchhccCCCcEEEecCCCCCCc-cCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCCCCCCC---Cc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSS-LPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCNGPPSS---AS 275 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~-LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~~~~~~---~~ 275 (462)
..++.+..+++|++|++++|..... +|..+..+++|++|++++|. .+++|++|++++|...... ..
T Consensus 84 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 84 QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 3455577899999999999864434 88888999999999999975 3559999999999533210 01
Q ss_pred ccccCcee-eeccCC-CCCcc-------cCC-Ccc--ccccCc-CC--CccCCC---CCCccEEEeeCCCCCe
Q 043908 276 CYLLFPIN-LMLRSS-DLGAL-------MLP-SLS--ELEDCK-RL--QSQPQL---PPNVTEVRVNGCASLV 330 (462)
Q Consensus 276 ~~~lp~~~-L~Ls~n-~l~~L-------~lP-~l~--~l~~c~-~L--~~lp~l---~~sL~~L~~~~C~sL~ 330 (462)
...+|.+. |+|++| ++++. .+| .++ ++++|. .+ ..+|.. .++|++|++++|..+.
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 23455555 999998 88742 455 565 667765 33 234422 2789999999987554
No 124
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.71 E-value=4.1e-05 Score=74.74 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=78.7
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC-----CCCCccEEEeecCCC-CCCCCcccccCcee-e
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS-----KLKNLKALSFRGCNG-PPSSASCYLLFPIN-L 284 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-----~L~~L~~L~l~~~~~-~~~~~~~~~lp~~~-L 284 (462)
|..++.+++|++|++++| .+..++. ++.+++|++|++++|. ..++|++|++++|.- ..+ ...++.+. |
T Consensus 51 ~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L 125 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS---CSRGQGKKNI 125 (317)
T ss_dssp HHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE---ECCCSSCEEE
T ss_pred HHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC---ccccCCCCEE
Confidence 357889999999999986 5555554 8899999999998864 345899999999871 111 12345555 9
Q ss_pred eccCCCCCcccCC-Cc------c--ccccCcCCCcc-C-CC---CCCccEEEeeCCCCCeeeccc
Q 043908 285 MLRSSDLGALMLP-SL------S--ELEDCKRLQSQ-P-QL---PPNVTEVRVNGCASLVTLLGA 335 (462)
Q Consensus 285 ~Ls~n~l~~L~lP-~l------~--~l~~c~~L~~l-p-~l---~~sL~~L~~~~C~sL~~lp~~ 335 (462)
+|++|.++++ .| .+ + +++++. +..+ | .+ .++|++|++++|. ++.++..
T Consensus 126 ~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 187 (317)
T 3o53_A 126 YLANNKITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ 187 (317)
T ss_dssp ECCSSCCCSG-GGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC
T ss_pred ECCCCCCCCc-cchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccccc
Confidence 9999999852 12 22 2 555553 3333 2 22 2789999998874 6666543
No 125
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.70 E-value=0.00012 Score=77.10 Aligned_cols=78 Identities=26% Similarity=0.258 Sum_probs=43.5
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCccc
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCY 277 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~ 277 (462)
.+|..+. ++|++|++++| .+..+| ..++++++|++|+++++. .+++|++|++++|. ..+|..
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--- 118 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--- 118 (562)
T ss_dssp SCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---
T ss_pred cCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---
Confidence 4555443 56677777764 344444 466667777777776642 34466777777666 111211
Q ss_pred ccCcee-eeccCCCCCc
Q 043908 278 LLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 278 ~lp~~~-L~Ls~n~l~~ 293 (462)
.++++. |+|++|.++.
T Consensus 119 ~l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDV 135 (562)
T ss_dssp CCTTCSEEECCSSCCSB
T ss_pred ccccCCEEECCCCCccc
Confidence 333333 6777776663
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.65 E-value=9.7e-05 Score=78.39 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC---------CCCCccEEEeecCC-CCCCCCcccccCcee-eeccC
Q 043908 220 GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS---------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LMLRS 288 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~---------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~ 288 (462)
.|++|+|++| .+..+|. ++++++|++|+|+++. ++++|++|++++|. ..+| .+..+|++. |+|++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence 5899999985 7888997 9999999999999864 44589999999988 2233 245556655 89999
Q ss_pred CCCCcccC-C-CccccccCcCCCccCCCCCCccEEEeeCCCCCeeec
Q 043908 289 SDLGALML-P-SLSELEDCKRLQSQPQLPPNVTEVRVNGCASLVTLL 333 (462)
Q Consensus 289 n~l~~L~l-P-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C~sL~~lp 333 (462)
|+|++ .. | .++ ++ ++|+.|+++++. ++.+|
T Consensus 518 N~l~~-~~~p~~l~---~l----------~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 518 NRLQQ-SAAIQPLV---SC----------PRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp SCCCS-SSTTGGGG---GC----------TTCCEEECTTSG-GGGSS
T ss_pred CCCCC-CCCcHHHh---cC----------CCCCEEEecCCc-CCCCc
Confidence 88884 11 5 332 11 456677776653 44443
No 127
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.62 E-value=0.00017 Score=70.62 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=42.1
Q ss_pred CCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN 268 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~ 268 (462)
|..++.+++|++|++++| .+..+|..+. ++|++|+++++. .+++|++|++++|.
T Consensus 95 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp GGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred HhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 567888888999999875 6778888775 788888887753 45588888888876
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.60 E-value=0.00014 Score=72.34 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=52.0
Q ss_pred chh-ccCCCcEEEecCCCCCCccC-ccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccC
Q 043908 214 SIE-HLSGLVQLTLKGCKNLSSLP-ATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLF 280 (462)
Q Consensus 214 si~-~L~~L~~L~l~~c~~l~~LP-~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp 280 (462)
.+. .+++|++|+|++| .+..+| ..+.++++|++|+|+++. .+.+|++|+|++|. ...+......++
T Consensus 58 ~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 58 WTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp SSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 344 7788888888875 556665 457778888888887643 34578888888777 111111233455
Q ss_pred cee-eeccCCCCCcccCC
Q 043908 281 PIN-LMLRSSDLGALMLP 297 (462)
Q Consensus 281 ~~~-L~Ls~n~l~~L~lP 297 (462)
.+. |+|++|+|+ .+|
T Consensus 137 ~L~~L~L~~N~l~--~l~ 152 (361)
T 2xot_A 137 QLQKLYLSQNQIS--RFP 152 (361)
T ss_dssp TCCEEECCSSCCC--SCC
T ss_pred cCCEEECCCCcCC--eeC
Confidence 555 788888877 455
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.58 E-value=0.00036 Score=61.97 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=59.9
Q ss_pred CcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCcee-eeccC
Q 043908 221 LVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LMLRS 288 (462)
Q Consensus 221 L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~ 288 (462)
-+.+++++ +.++.+|..+. ++|++|+|+++. ++++|++|+|++|. ..+|......++.+. |+|++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 37899998 57899999875 889999998753 45588888888887 223322223455555 78888
Q ss_pred CCCCcccCC-CccccccCcCCCccCCCCCCccEEEeeCC
Q 043908 289 SDLGALMLP-SLSELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 289 n~l~~L~lP-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
|+|+ .+| .. +.+ .++|++|+++++
T Consensus 91 N~l~--~l~~~~--~~~----------l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NHLK--SIPRGA--FDN----------LKSLTHIYLYNN 115 (174)
T ss_dssp SCCC--CCCTTT--TTT----------CTTCSEEECCSS
T ss_pred Cccc--eeCHHH--hcc----------ccCCCEEEeCCC
Confidence 8777 444 21 111 156778888775
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.55 E-value=3.3e-06 Score=76.75 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--C-------CCCccEEEeecCCC-CCCCCcccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--K-------LKNLKALSFRGCNG-PPSSASCYL 278 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--~-------L~~L~~L~l~~~~~-~~~~~~~~~ 278 (462)
+.+|..++.+++|++|++++| .+..+| .++++++|++|++++|. . +++|++|++++|.- ..| ....
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEK 113 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHH
T ss_pred hhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--cccc
Confidence 344558999999999999986 677798 88899999999998863 1 23788888888861 111 1122
Q ss_pred cCcee-eeccCCCCCcccCCCccccccCcCCCccCCCCCCccEEEeeCCC
Q 043908 279 LFPIN-LMLRSSDLGALMLPSLSELEDCKRLQSQPQLPPNVTEVRVNGCA 327 (462)
Q Consensus 279 lp~~~-L~Ls~n~l~~L~lP~l~~l~~c~~L~~lp~l~~sL~~L~~~~C~ 327 (462)
+|.+. |+|++|.++ .+|.+..+.. .++|++|++++|+
T Consensus 114 l~~L~~L~l~~N~i~--~~~~~~~l~~----------l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 114 LVNLRVLYMSNNKIT--NWGEIDKLAA----------LDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEEECC--CHHHHHHHTT----------TTTCSEEEECSCH
T ss_pred CCCCCEEECCCCcCC--chhHHHHHhc----------CCCCCEEEecCCc
Confidence 23333 777777776 2221111111 1567888888764
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.52 E-value=0.00013 Score=64.70 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=59.3
Q ss_pred CCCCchhccC-CCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCC-Ccc
Q 043908 210 EVPLSIEHLS-GLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSS-ASC 276 (462)
Q Consensus 210 ~iP~si~~L~-~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~-~~~ 276 (462)
.+|. +..+. +|++|++++| .+..+ ..++.+++|++|+++++. .+++|++|++++|. ...|. ...
T Consensus 33 ~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l 109 (176)
T 1a9n_A 33 VIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 109 (176)
T ss_dssp SCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGG
T ss_pred hhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhh
Confidence 4543 55555 9999999996 67777 678999999999999864 34599999999998 22221 123
Q ss_pred cccCcee-eeccCCCCCcccCC
Q 043908 277 YLLFPIN-LMLRSSDLGALMLP 297 (462)
Q Consensus 277 ~~lp~~~-L~Ls~n~l~~L~lP 297 (462)
..+|.+. |+|++|.++ .+|
T Consensus 110 ~~l~~L~~L~l~~N~i~--~~~ 129 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVT--NKK 129 (176)
T ss_dssp GGCTTCCEEECCSSGGG--GST
T ss_pred hcCCCCCEEEecCCCCC--CcH
Confidence 3455544 888888777 444
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.48 E-value=0.00061 Score=60.13 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=59.7
Q ss_pred CcEEEecCCCCCCccCccCCCCCCcCEEeecCCC----------CCCCccEEEeecCC-CCCCCCcccccCcee-eeccC
Q 043908 221 LVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LMLRS 288 (462)
Q Consensus 221 L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~ 288 (462)
.+.|++++ +.+..+|..+. ++|++|+|+++. .+++|++|++++|. ..++......+|.+. |+|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCC-CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 57899998 58899998874 889999998753 44588888888887 222322233555555 78888
Q ss_pred CCCCcccCC-CccccccCcCCCccCCCCCCccEEEeeCC
Q 043908 289 SDLGALMLP-SLSELEDCKRLQSQPQLPPNVTEVRVNGC 326 (462)
Q Consensus 289 n~l~~L~lP-~l~~l~~c~~L~~lp~l~~sL~~L~~~~C 326 (462)
|+|+ .+| .. +.+ .++|++|++++.
T Consensus 88 N~l~--~~~~~~--~~~----------l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLK--SIPRGA--FDN----------LKSLTHIWLLNN 112 (170)
T ss_dssp SCCC--CCCTTT--TTT----------CTTCCEEECCSS
T ss_pred CccC--EeCHHH--hcC----------CCCCCEEEeCCC
Confidence 8777 344 11 111 156778888764
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.44 E-value=0.00033 Score=68.89 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=54.1
Q ss_pred EEEecCCCCCCccCccCCCCCCcCEEeecCCC-----------CCCCccEEEeecCC-CCCCCCcccccCcee-eeccCC
Q 043908 223 QLTLKGCKNLSSLPATISSLKSLRTLELSGCS-----------KLKNLKALSFRGCN-GPPSSASCYLLFPIN-LMLRSS 289 (462)
Q Consensus 223 ~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~-----------~L~~L~~L~l~~~~-~~~~~~~~~~lp~~~-L~Ls~n 289 (462)
.+++++++.+..+|. ++.+++|++|+|+++. .|.+|++|+|++|. ..++......++.+. |+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 468887548999999 9999999999998632 45589999999997 222222245566666 999999
Q ss_pred CCCcccCC
Q 043908 290 DLGALMLP 297 (462)
Q Consensus 290 ~l~~L~lP 297 (462)
+|+ .+|
T Consensus 91 ~l~--~~~ 96 (347)
T 2ifg_A 91 ALE--SLS 96 (347)
T ss_dssp CCS--CCC
T ss_pred ccc--eeC
Confidence 988 555
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.42 E-value=0.00033 Score=62.58 Aligned_cols=59 Identities=10% Similarity=0.220 Sum_probs=41.5
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCc-cCccCCCCCCcCEEeecCCCCCC---------------CccEEEeecCC
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSS-LPATISSLKSLRTLELSGCSKLK---------------NLKALSFRGCN 268 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~-LP~~i~~L~~L~~L~l~~c~~L~---------------~L~~L~l~~~~ 268 (462)
..+|.....-.+|+.||+++|. +.. =-..+..+++|++|+|++|..++ +|++|+|++|.
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ccCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 3556543233479999999986 432 12346788999999999998665 37788888876
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.17 E-value=0.0001 Score=73.77 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=27.8
Q ss_pred hhccCCCcEEEecCCC--CC-CccCccC-------CCCCCcCEEeecCCC--------------CCCCccEEEeecCC
Q 043908 215 IEHLSGLVQLTLKGCK--NL-SSLPATI-------SSLKSLRTLELSGCS--------------KLKNLKALSFRGCN 268 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~--~l-~~LP~~i-------~~L~~L~~L~l~~c~--------------~L~~L~~L~l~~~~ 268 (462)
+..+++|++|+|++|. .+ +.+|.++ .++++|++|+|+++. ++++|++|++++|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 4456666666666541 11 1233333 456666666666543 12356666666665
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.16 E-value=0.00016 Score=72.27 Aligned_cols=39 Identities=18% Similarity=0.048 Sum_probs=22.1
Q ss_pred hccCCCcEEEecCCCCCC----ccCccCCCCCCcCEEeecCCC
Q 043908 216 EHLSGLVQLTLKGCKNLS----SLPATISSLKSLRTLELSGCS 254 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~----~LP~~i~~L~~L~~L~l~~c~ 254 (462)
..+++|++|+|++|.... .+|..+.++++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 455666666666643222 255555666666666666653
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.66 E-value=0.00043 Score=68.71 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=60.3
Q ss_pred CchhccC-CCcEEEecCCCCCCccCccCCCC-----CCcCEEeecCCC--------------CC-CCccEEEeecCC-CC
Q 043908 213 LSIEHLS-GLVQLTLKGCKNLSSLPATISSL-----KSLRTLELSGCS--------------KL-KNLKALSFRGCN-GP 270 (462)
Q Consensus 213 ~si~~L~-~L~~L~l~~c~~l~~LP~~i~~L-----~~L~~L~l~~c~--------------~L-~~L~~L~l~~~~-~~ 270 (462)
..+..++ +|++|+|++|......+..++.+ ++|++|++++|. .+ ++|++|++++|. ..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 4455666 67777777763333334444443 777777777764 11 467777777776 11
Q ss_pred CCCCc----ccccC-cee-eeccCCCCCcc----------cCC-Ccc--ccccCcCCCccC---------CCCCCccEEE
Q 043908 271 PSSAS----CYLLF-PIN-LMLRSSDLGAL----------MLP-SLS--ELEDCKRLQSQP---------QLPPNVTEVR 322 (462)
Q Consensus 271 ~~~~~----~~~lp-~~~-L~Ls~n~l~~L----------~lP-~l~--~l~~c~~L~~lp---------~l~~sL~~L~ 322 (462)
.+... ...+| .+. |+|++|.++.. ..| .++ ++++|. +...+ ..|++|++|+
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEE
Confidence 11000 01112 222 77777777731 233 444 555553 22221 2235788888
Q ss_pred eeCCC
Q 043908 323 VNGCA 327 (462)
Q Consensus 323 ~~~C~ 327 (462)
+++|.
T Consensus 203 Ls~N~ 207 (362)
T 3goz_A 203 LSANL 207 (362)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 87764
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.65 E-value=3.2e-05 Score=70.12 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC--------CCCCccEEEeecCCCC-CCC-Ccccc
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS--------KLKNLKALSFRGCNGP-PSS-ASCYL 278 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~--------~L~~L~~L~l~~~~~~-~~~-~~~~~ 278 (462)
..+| .++.+++|++|++++| .+..+|..++.+++|++|++++|. .+++|++|++++|.-. .+. .....
T Consensus 61 ~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 61 EKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138 (198)
T ss_dssp SCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTT
T ss_pred cccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhc
Confidence 3567 8999999999999986 677999888888999999999864 3348999999998711 111 11334
Q ss_pred cCcee-eeccCCCCCc
Q 043908 279 LFPIN-LMLRSSDLGA 293 (462)
Q Consensus 279 lp~~~-L~Ls~n~l~~ 293 (462)
+|.+. |++++|.+++
T Consensus 139 l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYN 154 (198)
T ss_dssp TTTCSEEEECSCHHHH
T ss_pred CCCCCEEEecCCcccc
Confidence 55555 8888888775
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.59 E-value=0.0009 Score=66.36 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=72.6
Q ss_pred CCchhcc-----CCCcEEEecCCCCCCcc-Ccc----CCCC-CCcCEEeecCCC--------------C-CCCccEEEee
Q 043908 212 PLSIEHL-----SGLVQLTLKGCKNLSSL-PAT----ISSL-KSLRTLELSGCS--------------K-LKNLKALSFR 265 (462)
Q Consensus 212 P~si~~L-----~~L~~L~l~~c~~l~~L-P~~----i~~L-~~L~~L~l~~c~--------------~-L~~L~~L~l~ 265 (462)
+..+..+ ++|++|+|++|. +... +.. +..+ ++|++|++++|. . .++|++|+++
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred HHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 4455555 899999999975 4433 333 3344 899999999875 1 2489999999
Q ss_pred cCC-CCCCC-C---cccccC-cee-eeccCCCCCcc----------cCC-Ccc--ccccCcCCCc-----cC----CCCC
Q 043908 266 GCN-GPPSS-A---SCYLLF-PIN-LMLRSSDLGAL----------MLP-SLS--ELEDCKRLQS-----QP----QLPP 316 (462)
Q Consensus 266 ~~~-~~~~~-~---~~~~lp-~~~-L~Ls~n~l~~L----------~lP-~l~--~l~~c~~L~~-----lp----~l~~ 316 (462)
+|. +.... . ....+| .+. |+|++|+++.. ..| +++ +|++|. +.. ++ ..++
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCT
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCC
Confidence 997 11000 0 011233 444 99999998852 122 333 555543 333 33 2346
Q ss_pred CccEEEeeCCCCCeee
Q 043908 317 NVTEVRVNGCASLVTL 332 (462)
Q Consensus 317 sL~~L~~~~C~sL~~l 332 (462)
+|++|++++|. +...
T Consensus 226 ~L~~L~Ls~N~-l~~~ 240 (362)
T 3goz_A 226 HVVSLNLCLNC-LHGP 240 (362)
T ss_dssp TCCEEECCSSC-CCCC
T ss_pred CceEEECcCCC-CCcH
Confidence 99999999873 4443
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.12 E-value=0.0021 Score=65.39 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=20.4
Q ss_pred CCchhccCCCcEEEecCCCCCCcc------CccCCCCCCcCEEeecCC
Q 043908 212 PLSIEHLSGLVQLTLKGCKNLSSL------PATISSLKSLRTLELSGC 253 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~l~~L------P~~i~~L~~L~~L~l~~c 253 (462)
|..+..+++|++|++++| .+... +.....+++|++|++++|
T Consensus 220 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 220 CGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 444555566666666654 33321 111224556666666654
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.97 E-value=0.00057 Score=72.01 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=32.5
Q ss_pred hccCCCcEEEecCCCCCCccCccCC-CCCCcCEEeecCCC------------CCCCccEEEeecCC
Q 043908 216 EHLSGLVQLTLKGCKNLSSLPATIS-SLKSLRTLELSGCS------------KLKNLKALSFRGCN 268 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~LP~~i~-~L~~L~~L~l~~c~------------~L~~L~~L~l~~~~ 268 (462)
..+++|++|+|++|......+..+. .+++|++|++++|. ++++|++|++++|.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 4566777777777653333344443 46677777777663 34467777777665
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.87 E-value=0.0039 Score=55.52 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=44.7
Q ss_pred chhccCCCcEEEecCCCCCCcc-CccCCCC----CCcCEEeecCCCCCC-----------CccEEEeecCCCCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSL-PATISSL----KSLRTLELSGCSKLK-----------NLKALSFRGCNGPP 271 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~L-P~~i~~L----~~L~~L~l~~c~~L~-----------~L~~L~l~~~~~~~ 271 (462)
.+..+++|+.|+|++|..+..- -..++.+ ++|++|+|++|.+++ +|++|++++|.+..
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 4678899999999999877531 1123443 379999999998766 89999999998543
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.69 E-value=0.0016 Score=68.50 Aligned_cols=52 Identities=21% Similarity=0.140 Sum_probs=29.4
Q ss_pred chhccCCCcEEEecC----------CCCCCc--cCccCCCCCCcCEEeecCCCC------------CCCccEEEeec
Q 043908 214 SIEHLSGLVQLTLKG----------CKNLSS--LPATISSLKSLRTLELSGCSK------------LKNLKALSFRG 266 (462)
Q Consensus 214 si~~L~~L~~L~l~~----------c~~l~~--LP~~i~~L~~L~~L~l~~c~~------------L~~L~~L~l~~ 266 (462)
....+++|++|++++ |+.+.. ++.-...+++|++|+++ |.+ +++|+.|++++
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEee
Confidence 345677788888874 555542 22222346677777773 332 33577777763
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.46 E-value=0.0053 Score=64.52 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=19.5
Q ss_pred hhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeec
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELS 251 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~ 251 (462)
+.++++|++|++++| .+..+|..++++++|+.|+++
T Consensus 216 ~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEEC
T ss_pred HhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccc
Confidence 345556666666654 334455555555555555554
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.17 E-value=0.0059 Score=61.99 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=28.5
Q ss_pred cCCCcEEEecCCCCCCc-----cCccCCCCCCcCEEeecCCC---------------CCCCccEEEeecCC
Q 043908 218 LSGLVQLTLKGCKNLSS-----LPATISSLKSLRTLELSGCS---------------KLKNLKALSFRGCN 268 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~-----LP~~i~~L~~L~~L~l~~c~---------------~L~~L~~L~l~~~~ 268 (462)
+++|++|++++| .+.. +|..+..+++|++|++++|. .+++|++|++++|.
T Consensus 198 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 198 PCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp CCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 346666666665 3332 45555566666666666653 23466666666664
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.90 E-value=0.024 Score=51.42 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCChhHH-HHc-CCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRDRQLL-VAH-EVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~~~V~-~~~-~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++.+||+||++... . ++.+.........+.++|+||+...-+ ... .... .+++++++.+|..+++...+..
T Consensus 125 ~~~~vlviDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~--~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL--QFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SSSEEEEEETGGGSCHHH-HHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEECcccccHHH-HHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhh--hccCCCCCHHHHHHHHHHHHHh
Confidence 467899999997633 3 555554444445678899998765422 111 1123 8999999999999999987754
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.88 E-value=0.0048 Score=64.85 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=20.7
Q ss_pred ccCCCcEEEecCCCCCCc--cCccCCCCCCcCEEeecCCC
Q 043908 217 HLSGLVQLTLKGCKNLSS--LPATISSLKSLRTLELSGCS 254 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~--LP~~i~~L~~L~~L~l~~c~ 254 (462)
.+++|++|++++|..++. ++..+.++++|++|++++|.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 455666666666544433 33333355666666666554
No 148
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.61 E-value=0.15 Score=50.63 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCCcEEEEeCCCCcc-------hhHHHhhcCCCCC---C--CCeEEEEEeCChhHHHHcC---------CCCcceEecCC
Q 043908 49 TGPPFMVEDRSDRIL-------TLFTTLKVAPIMA---A--AAAGILITTRDRQLLVAHE---------VDEEHILDLDV 107 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~-------~~~e~L~~~~~~~---~--~GSrIIvTTR~~~V~~~~~---------~~~~~~y~v~~ 107 (462)
+++++|||||++... +.+..+....... + ..-.||+|||+.++...+. ... .+++.+
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~--~i~l~~ 214 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF--KLHLPA 214 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE--EEECCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC--eeeeCC
Confidence 679999999997632 2133332221111 2 3445888998776542221 122 499999
Q ss_pred CCHHHHHHHHHHh
Q 043908 108 LNNDEALQFFSVK 120 (462)
Q Consensus 108 L~~~es~~LF~~~ 120 (462)
|+.++++++|...
T Consensus 215 l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 215 YKSRELYTILEQR 227 (412)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.29 E-value=0.14 Score=49.58 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=16.2
Q ss_pred cCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecC
Q 043908 218 LSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSG 252 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~ 252 (462)
+++|+.|+|.+ .+..++.. +..+++|+.|++++
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~ 133 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK 133 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCC
Confidence 55555555554 44445432 33455555555543
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.94 E-value=0.032 Score=53.07 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=26.5
Q ss_pred hccCCCcEEEecCCCCCCc---cCccCCCCCCcCEEeecCC
Q 043908 216 EHLSGLVQLTLKGCKNLSS---LPATISSLKSLRTLELSGC 253 (462)
Q Consensus 216 ~~L~~L~~L~l~~c~~l~~---LP~~i~~L~~L~~L~l~~c 253 (462)
.++++|+.|+|++| .+.. +|..++.+++|++|+|+++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 46778999999986 4444 4455567888888888764
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.68 E-value=0.16 Score=49.21 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.3
Q ss_pred ccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecC
Q 043908 217 HLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSG 252 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~ 252 (462)
.+++|+.|+|++| .+..+|.. +.++++|+.|++..
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc
Confidence 3789999999974 68888875 55788999999876
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.30 E-value=0.37 Score=48.34 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=27.8
Q ss_pred CchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeec
Q 043908 213 LSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELS 251 (462)
Q Consensus 213 ~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~ 251 (462)
..+..+++|+.+++.+ +.+..+|.......+|+.+.+.
T Consensus 174 ~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp STTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECC
T ss_pred HHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeC
Confidence 4566778888888886 4677777766666777777775
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.86 E-value=0.17 Score=50.14 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=35.9
Q ss_pred CCCCchhccCCCcEEEecCCCCCCccCccCCCCCCcCEEeecCCC------------CCCCccEEEeec
Q 043908 210 EVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLKSLRTLELSGCS------------KLKNLKALSFRG 266 (462)
Q Consensus 210 ~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~c~------------~L~~L~~L~l~~ 266 (462)
+++..+..+++|+.|+|++|..+ .+|. + .+++|++|++..|. ++++|++|+|+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 45555667778888888876433 4444 3 37788888887653 456788888753
No 154
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.69 E-value=0.24 Score=47.88 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcC-CCcEEEEeCCCCc-----chhHHHhhcCCCCCCCCeEEEEEeCChhHHHHc----C----C--CCcc
Q 043908 38 LARIIEAAAAAT-GPPFMVEDRSDRI-----LTLFTTLKVAPIMAAAAAGILITTRDRQLLVAH----E----V--DEEH 101 (462)
Q Consensus 38 l~~i~~~~~~~~-Kr~LLVLDDVw~~-----~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~----~----~--~~~~ 101 (462)
+..+.+...... ++++|||||+... .+++..+...... ..+.++|+|+|...++... . . ....
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~ 202 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFS 202 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCE
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccc
Confidence 444554444322 4899999999652 2223333221111 2468999999987654321 0 0 1012
Q ss_pred eEecCCCCHHHHHHHHHHh
Q 043908 102 ILDLDVLNNDEALQFFSVK 120 (462)
Q Consensus 102 ~y~v~~L~~~es~~LF~~~ 120 (462)
.+++.+|+.+|+.+++...
T Consensus 203 ~i~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRG 221 (357)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHH
Confidence 7999999999999999864
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.13 E-value=0.096 Score=52.09 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHH
Q 043908 106 DVLNNDEALQFFS 118 (462)
Q Consensus 106 ~~L~~~es~~LF~ 118 (462)
+.++.+.+..+|.
T Consensus 44 ~~~~~~~~lnl~~ 56 (372)
T 3un9_A 44 QVLPPSELLDHLF 56 (372)
T ss_dssp CCSCHHHHHHHHH
T ss_pred cCCChhhhHHHHH
Confidence 4566667777765
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=91.64 E-value=0.3 Score=48.36 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCchhccCCCcEEEecCCCC---------CCccCccCCCCCCcCEEeecCCC-------CCCCccEEEeecCCCCCCCC-
Q 043908 212 PLSIEHLSGLVQLTLKGCKN---------LSSLPATISSLKSLRTLELSGCS-------KLKNLKALSFRGCNGPPSSA- 274 (462)
Q Consensus 212 P~si~~L~~L~~L~l~~c~~---------l~~LP~~i~~L~~L~~L~l~~c~-------~L~~L~~L~l~~~~~~~~~~- 274 (462)
..++.++++|+.|.+.+... ...++.-+..+++|+.|.|+|+. .+.+|++|++..|. ++..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~--l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGG--LPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSB--CCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCC--CChHH
Confidence 45678899999999975321 12344445678999999999874 24589999998776 1111
Q ss_pred --c--ccccCcee-eecc
Q 043908 275 --S--CYLLFPIN-LMLR 287 (462)
Q Consensus 275 --~--~~~lp~~~-L~Ls 287 (462)
. ...+|++. |+|+
T Consensus 210 l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHccCCCCcEEEEe
Confidence 0 12577766 6664
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.39 E-value=3.1 Score=40.52 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCcc-----hh-HHHhhcCCCCCCCCeEEEEEeCChhHH----HHc--CCCCcceEecCCCCHHHHHHHH
Q 043908 50 GPPFMVEDRSDRIL-----TL-FTTLKVAPIMAAAAAGILITTRDRQLL----VAH--EVDEEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 50 Kr~LLVLDDVw~~~-----~~-~e~L~~~~~~~~~GSrIIvTTR~~~V~----~~~--~~~~~~~y~v~~L~~~es~~LF 117 (462)
++.+|||||++... +. +..+... . .+.+||+||+..... ... .... .+++++++.++..++|
T Consensus 133 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 133 IRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISNDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFIL 206 (384)
T ss_dssp SCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHH
T ss_pred CCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHH
Confidence 44499999997643 11 2233322 2 678999999876321 111 1123 8999999999999999
Q ss_pred HHhh
Q 043908 118 SVKA 121 (462)
Q Consensus 118 ~~~a 121 (462)
...+
T Consensus 207 ~~~~ 210 (384)
T 2qby_B 207 SKYA 210 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 158
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.10 E-value=0.22 Score=44.32 Aligned_cols=72 Identities=6% Similarity=0.011 Sum_probs=48.6
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCChhHH-HHc-CCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDRQLL-VAH-EVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~~V~-~~~-~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
+++.+||+||++.... ..+.+.........+.++|+||+...-. ... ..-. .+++.+++.++..+++...+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA--VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHH
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc--eeecCCCCHHHHHHHHHHHHH
Confidence 5788999999986531 1344443333345678999998875421 111 1122 799999999999999998764
No 159
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.14 E-value=0.66 Score=44.59 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCcc--------hhHHHhhcCCCCCCCCeEEEEEeCChhHHHHc----C----C--CCcceEecCCCCHH
Q 043908 50 GPPFMVEDRSDRIL--------TLFTTLKVAPIMAAAAAGILITTRDRQLLVAH----E----V--DEEHILDLDVLNND 111 (462)
Q Consensus 50 Kr~LLVLDDVw~~~--------~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~----~----~--~~~~~y~v~~L~~~ 111 (462)
++++|||||++... +.+..|...... .++.++|+|++...++... . . .....+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 48999999997632 223333322111 2478999999987653321 1 0 11127999999999
Q ss_pred HHHHHHHHh
Q 043908 112 EALQFFSVK 120 (462)
Q Consensus 112 es~~LF~~~ 120 (462)
|+.+++...
T Consensus 207 e~~~~l~~~ 215 (350)
T 2qen_A 207 TSVEFLKRG 215 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999764
No 160
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.72 E-value=1.4 Score=42.96 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=42.7
Q ss_pred CCCcEEEEeCCCCcch------hHHHhhcCCCCC--CCCeEEEEEeCChh--------HHHHcCCCCcceEecCCCCHHH
Q 043908 49 TGPPFMVEDRSDRILT------LFTTLKVAPIMA--AAAAGILITTRDRQ--------LLVAHEVDEEHILDLDVLNNDE 112 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~------~~e~L~~~~~~~--~~GSrIIvTTR~~~--------V~~~~~~~~~~~y~v~~L~~~e 112 (462)
+++.+|||||++.... .+..+....... ..+..+|.||+... +...++. . .+.+.+++.++
T Consensus 129 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~-~--~i~l~~l~~~~ 205 (387)
T 2v1u_A 129 RGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE-V--ELVFPPYTAPQ 205 (387)
T ss_dssp CSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS-E--ECCBCCCCHHH
T ss_pred CCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC-e--EEeeCCCCHHH
Confidence 5688999999976431 122222211111 34567888887663 2222222 2 79999999999
Q ss_pred HHHHHHHhh
Q 043908 113 ALQFFSVKA 121 (462)
Q Consensus 113 s~~LF~~~a 121 (462)
..+++...+
T Consensus 206 ~~~il~~~~ 214 (387)
T 2v1u_A 206 LRDILETRA 214 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998774
No 161
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.33 E-value=0.81 Score=44.57 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCcc-----hhHHHhhcCCCC-CCCCeEEEEEeCChhHHHHcCCC-----CcceEecCCCCHHHHHHHH
Q 043908 49 TGPPFMVEDRSDRIL-----TLFTTLKVAPIM-AAAAAGILITTRDRQLLVAHEVD-----EEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~-----~~~e~L~~~~~~-~~~GSrIIvTTR~~~V~~~~~~~-----~~~~y~v~~L~~~es~~LF 117 (462)
+++.+|||||++... +.+..+...... ...+..+|+||++......+... ....+++++++.++..+++
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHH
Confidence 568999999997532 113333222211 23456788888876543332110 0027999999999999999
Q ss_pred HHhh
Q 043908 118 SVKA 121 (462)
Q Consensus 118 ~~~a 121 (462)
...+
T Consensus 207 ~~~~ 210 (386)
T 2qby_A 207 TKRA 210 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=86.14 E-value=0.51 Score=41.65 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=39.8
Q ss_pred chhccCCCcEEEecCCCCCC-----ccCccCCCCCCcCEEeecCCCC--------------CCCccEEEeecCC
Q 043908 214 SIEHLSGLVQLTLKGCKNLS-----SLPATISSLKSLRTLELSGCSK--------------LKNLKALSFRGCN 268 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~-----~LP~~i~~L~~L~~L~l~~c~~--------------L~~L~~L~l~~~~ 268 (462)
.+...+.|+.|+|++|..++ .+...+...++|++|+|++|.- .++|++|+|++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 34567789999999874554 3555666778899999988751 1278888888876
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.72 E-value=0.65 Score=44.16 Aligned_cols=72 Identities=10% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCChh-HHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRDRQ-LLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
+++.++|+||++... . ++.|.........++++|+||+... +....... ...+++.+++.++..+++...+.
T Consensus 106 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 106 GKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ-CAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp TCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeCChhhchhHHHhh-ceEEeecCCCHHHHHHHHHHHHH
Confidence 468899999998643 2 3444333333356788888887643 22222111 12899999999999999988764
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=82.79 E-value=0.49 Score=46.88 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=50.5
Q ss_pred cCCCcEEEecCCCCCC-----ccCccCCCCCCcCEEeecCCC--------------CCCCccEEEeecCCCCCCCC----
Q 043908 218 LSGLVQLTLKGCKNLS-----SLPATISSLKSLRTLELSGCS--------------KLKNLKALSFRGCNGPPSSA---- 274 (462)
Q Consensus 218 L~~L~~L~l~~c~~l~-----~LP~~i~~L~~L~~L~l~~c~--------------~L~~L~~L~l~~~~~~~~~~---- 274 (462)
.++|++|+|++| .++ .++..+..+++|++|+|++|. ..++|+.|+|++|.-. ...
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~-~~g~~~l 231 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG-DTAALAL 231 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC-HHHHHHH
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC-HHHHHHH
Confidence 468999999987 454 355666778899999999865 2348999999998711 000
Q ss_pred --cccccCcee-eeccCCCCCc
Q 043908 275 --SCYLLFPIN-LMLRSSDLGA 293 (462)
Q Consensus 275 --~~~~lp~~~-L~Ls~n~l~~ 293 (462)
.+...|++. |+|++|.|+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 011234444 9999998873
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=81.29 E-value=4 Score=40.61 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCcEEEecCCCCCCccCccCCCCCCcCEEeecC---------CCCCCCccEEEeecCC
Q 043908 220 GLVQLTLKGCKNLSSLPATISSLKSLRTLELSG---------CSKLKNLKALSFRGCN 268 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i~~L~~L~~L~l~~---------c~~L~~L~~L~l~~~~ 268 (462)
+|+.+.+.. ++..++.....-.+|+.+.+.. ...+.+|+.+++.++.
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSC
T ss_pred CccEEEeCC--CccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCc
Confidence 566666654 3555554433224566666543 1233356666665543
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=80.71 E-value=0.99 Score=42.64 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCCCchhccCCCcEEEecCCCCCCccCccCCCCC--CcCEEeecC
Q 043908 209 EEVPLSIEHLSGLVQLTLKGCKNLSSLPATISSLK--SLRTLELSG 252 (462)
Q Consensus 209 ~~iP~si~~L~~L~~L~l~~c~~l~~LP~~i~~L~--~L~~L~l~~ 252 (462)
..+|..++.+++|++|+|++| .+..+ ..+..+. +|++|+|++
T Consensus 186 ~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 186 DDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDG 229 (267)
T ss_dssp GGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTT
T ss_pred ccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccC
Confidence 456778889999999999985 56655 2344443 444444433
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=78.66 E-value=1.4 Score=38.65 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=17.5
Q ss_pred ccCCCcEEEecCCCCCCc-----cCccCCCCCCcCEEeecCC
Q 043908 217 HLSGLVQLTLKGCKNLSS-----LPATISSLKSLRTLELSGC 253 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~-----LP~~i~~L~~L~~L~l~~c 253 (462)
..++|++|+|++|. ++. +...+...++|++|+|++|
T Consensus 63 ~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 63 TNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred hCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34456666666542 321 2233333455666666554
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.54 E-value=1.8 Score=35.90 Aligned_cols=33 Identities=36% Similarity=0.603 Sum_probs=23.6
Q ss_pred CCcEEEecCCCCCCccCccC-CCCCCcCEEeecCC
Q 043908 220 GLVQLTLKGCKNLSSLPATI-SSLKSLRTLELSGC 253 (462)
Q Consensus 220 ~L~~L~l~~c~~l~~LP~~i-~~L~~L~~L~l~~c 253 (462)
+|++|+|++ +.+..||... ..+++|++|+|+++
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 588889987 4788888765 35677777766653
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.50 E-value=4.2 Score=37.84 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=51.3
Q ss_pred CCCcEEEEeCCCCc-----------c-h---hHHHhhcCCC--CCCCCeEEEEEeCChhHHH-----HcCCCCcceEecC
Q 043908 49 TGPPFMVEDRSDRI-----------L-T---LFTTLKVAPI--MAAAAAGILITTRDRQLLV-----AHEVDEEHILDLD 106 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~-----------~-~---~~e~L~~~~~--~~~~GSrIIvTTR~~~V~~-----~~~~~~~~~y~v~ 106 (462)
.+..+|+|||+... . + .+..+..... ....+.+||.||...+.+. ....+. .+.+.
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~--~i~~~ 186 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR--IIEVP 186 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEE--EEECC
T ss_pred cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCe--EEEEC
Confidence 56679999999653 1 1 0111211111 1234677888887554332 112223 79999
Q ss_pred CCCHHHHHHHHHHhhhCCCC-CCccHHHHHHH
Q 043908 107 VLNNDEALQFFSVKAFKSHR-PVGDYVELSER 137 (462)
Q Consensus 107 ~L~~~es~~LF~~~af~~~~-~~~~~~~l~~~ 137 (462)
.++.++-.+++...+..... ...++.+++..
T Consensus 187 ~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKMNLAEDVNLEEIAKM 218 (285)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHH
Confidence 99999999999987654332 33456666553
No 170
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=77.98 E-value=2.9 Score=39.55 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=48.4
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCChhH-HHHcCCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRDRQL-LVAHEVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~~~V-~~~~~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++.++|+||++... . ++.|.........+.++|+||....- ....... ...+++.+++.++..+++...+..
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr-~~~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR-CAIFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT-EEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh-CcEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999998653 3 44454443444567899998876532 1111111 117899999999999999877654
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=76.90 E-value=5.9 Score=38.41 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCC-C---CCeEEEEEeCChhHHHHc--------CCCCcceEecCCCCHHHHHH
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMA-A---AAAGILITTRDRQLLVAH--------EVDEEHILDLDVLNNDEALQ 115 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~-~---~GSrIIvTTR~~~V~~~~--------~~~~~~~y~v~~L~~~es~~ 115 (462)
+++.+|||||++.... ....|....... . .+..||+||++..+.... .. . .+++.+++.++..+
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~-~--~i~~~pl~~~~~~~ 200 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGK-Y--VIRFSPYTKDQIFD 200 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTT-C--EEECCCCBHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCC-c--eEEeCCCCHHHHHH
Confidence 6788999999977531 134443333221 1 467888888877544322 22 2 69999999999999
Q ss_pred HHHHhh
Q 043908 116 FFSVKA 121 (462)
Q Consensus 116 LF~~~a 121 (462)
++...+
T Consensus 201 ~l~~~~ 206 (389)
T 1fnn_A 201 ILLDRA 206 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=76.54 E-value=8.1 Score=37.90 Aligned_cols=31 Identities=19% Similarity=0.584 Sum_probs=16.8
Q ss_pred ccccCcCCCccCCCCCCccEEE---eeCCCCCeee
Q 043908 301 ELEDCKRLQSQPQLPPNVTEVR---VNGCASLVTL 332 (462)
Q Consensus 301 ~l~~c~~L~~lp~l~~sL~~L~---~~~C~sL~~l 332 (462)
-..+|.+|+++ .+|.+++.+. ..+|.+|+++
T Consensus 338 aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 338 SFRGCTSLSNI-NFPLSLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TTTTCTTCCEE-CCCTTCCEECTTTBTTCTTCCEE
T ss_pred hccCCCCCCEE-EECccccEehHHHhhCCCCCCEE
Confidence 34566666655 3445555553 2456666665
No 173
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=76.08 E-value=6.6 Score=38.55 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=16.2
Q ss_pred chhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEee
Q 043908 214 SIEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLEL 250 (462)
Q Consensus 214 si~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l 250 (462)
.+.++++|+.+.+.+ .+..++.. +.++.+|+.+.+
T Consensus 157 aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 157 AFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCC
T ss_pred hhcccCCCcEEecCC--ccceeccccccCCCCceEEEc
Confidence 344555666666643 23334332 223444444444
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=66.66 E-value=12 Score=37.75 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=50.6
Q ss_pred CCcEEEEeCCCCcc---hhHHHhhcCCCC-CCCCeEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHHH
Q 043908 50 GPPFMVEDRSDRIL---TLFTTLKVAPIM-AAAAAGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 50 Kr~LLVLDDVw~~~---~~~e~L~~~~~~-~~~GSrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~L 116 (462)
+.-+|+|||+.... ..-+.+...+.. ...|..||+||.+ ..+...+.... ++.+++++.++-.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~--~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGL--VAKLEPPDEETRKSI 271 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSB--CCBCCCCCHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCe--EEEeCCCCHHHHHHH
Confidence 67899999996432 101122111110 1457789998876 34444454333 789999999999999
Q ss_pred HHHhhhCC--CCCCccHHHHHH
Q 043908 117 FSVKAFKS--HRPVGDYVELSE 136 (462)
Q Consensus 117 F~~~af~~--~~~~~~~~~l~~ 136 (462)
+...+-.. ..+++....++.
T Consensus 272 L~~~~~~~~~~i~~e~l~~la~ 293 (440)
T 2z4s_A 272 ARKMLEIEHGELPEEVLNFVAE 293 (440)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHH
Confidence 98876421 223333444444
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.28 E-value=8.8 Score=31.54 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=18.7
Q ss_pred cEEEecCCCCCC--ccCccCCCCCCcCEEeecCC
Q 043908 222 VQLTLKGCKNLS--SLPATISSLKSLRTLELSGC 253 (462)
Q Consensus 222 ~~L~l~~c~~l~--~LP~~i~~L~~L~~L~l~~c 253 (462)
..++.++ ..+. .+|..+ -.+|++|+|+++
T Consensus 11 ~~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N 41 (130)
T 3rfe_A 11 TLVDCGR-RGLTWASLPTAF--PVDTTELVLTGN 41 (130)
T ss_dssp TEEECCS-SCCCTTTSCSCC--CTTCSEEECTTS
T ss_pred CEEEeCC-CCCccccCCCCC--CcCCCEEECCCC
Confidence 3677776 5777 888754 235677777653
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=65.91 E-value=17 Score=33.88 Aligned_cols=73 Identities=7% Similarity=0.048 Sum_probs=49.6
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCChh-HHHHc-CCCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDRQ-LLVAH-EVDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~-~~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
+++-++|+||+..... ..+.|.........+.++|+||.... +.... ..-. .+++.+++.++..+++...+-.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA--VFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE--EEECCCCCHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe--EEEecCCCHHHHHHHHHHHHHH
Confidence 4678999999976431 14556655555566788888887654 22222 1122 8999999999999998877643
No 177
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=64.21 E-value=26 Score=33.79 Aligned_cols=30 Identities=33% Similarity=0.722 Sum_probs=14.3
Q ss_pred cccCcCCCccCCCCCCccEEEe---eCCCCCeee
Q 043908 302 LEDCKRLQSQPQLPPNVTEVRV---NGCASLVTL 332 (462)
Q Consensus 302 l~~c~~L~~lp~l~~sL~~L~~---~~C~sL~~l 332 (462)
..+|.+|+++ .+|.+++.+.- .+|.+|+++
T Consensus 306 F~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 306 FMDCVKLSSV-TLPTALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCCC
T ss_pred hcCCCCCCEE-EcCccccEEHHHHhhCCCCCCEE
Confidence 4455555544 23444554432 245555554
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=60.17 E-value=6.5 Score=38.63 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=4.6
Q ss_pred cccCcCCCcc
Q 043908 302 LEDCKRLQSQ 311 (462)
Q Consensus 302 l~~c~~L~~l 311 (462)
..+|.+|+++
T Consensus 330 F~~C~~L~~i 339 (394)
T 4gt6_A 330 FAGCEQLERI 339 (394)
T ss_dssp TTTCTTCCEE
T ss_pred hhCCCCCCEE
Confidence 3445555443
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=58.39 E-value=8.6 Score=37.06 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCChh-HHHHc-CCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDRQ-LLVAH-EVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~~-V~~~~-~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++.++|+||+..... .++.|.........+.++|+||.+.. +.... .... .+++.+++.++..+++...+
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~--~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL--QFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhee--EeeCCCCCHHHHHHHHHHHH
Confidence 5678999999975431 13444433333345677777776443 22222 1113 89999999999999998665
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=55.44 E-value=9.1 Score=37.12 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=24.4
Q ss_pred hhccCCCcEEEecCCCCCCccCcc-CCCCCCcCEEeecC
Q 043908 215 IEHLSGLVQLTLKGCKNLSSLPAT-ISSLKSLRTLELSG 252 (462)
Q Consensus 215 i~~L~~L~~L~l~~c~~l~~LP~~-i~~L~~L~~L~l~~ 252 (462)
+.++.+|+.+.+.. .+..++.. +..+++|+.+.+.+
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC
T ss_pred cceeehhccccccc--cceeccccccccccccccccccc
Confidence 44567888888864 56677654 34667787777754
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=54.92 E-value=55 Score=30.90 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=44.1
Q ss_pred CCCcEEEEeCCCCcc----------------hhHHHhhcCCCCCCCCeEEEEEeCChhH-----HHHcCCCCcceEecCC
Q 043908 49 TGPPFMVEDRSDRIL----------------TLFTTLKVAPIMAAAAAGILITTRDRQL-----LVAHEVDEEHILDLDV 107 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~----------------~~~e~L~~~~~~~~~GSrIIvTTR~~~V-----~~~~~~~~~~~y~v~~ 107 (462)
.+..+|+|||+.... +++..+.+ ......+..||.||...+. .. ..+. .+.+..
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~--~i~~~~ 183 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRR--RFER--RIYIPL 183 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG-GGTSCCCEEEEEEESCGGGSCHHHHH--HCCE--EEECCC
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc-ccccCCceEEEEecCChhhCCHHHHc--ccCe--EEEeCC
Confidence 567899999997431 11222221 1122446677778876432 33 2333 789999
Q ss_pred CCHHHHHHHHHHhhhC
Q 043908 108 LNNDEALQFFSVKAFK 123 (462)
Q Consensus 108 L~~~es~~LF~~~af~ 123 (462)
.+.++-.+++..++-+
T Consensus 184 p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 184 PDLAARTTMFEINVGD 199 (322)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999987654
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=52.01 E-value=30 Score=31.75 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=41.3
Q ss_pred CCCcEEEEeCCCCc-----------chhHHHhhcCCC---CCCCCeEEEEEeCChhHHHHcCCCC--cceEecCCCCH-H
Q 043908 49 TGPPFMVEDRSDRI-----------LTLFTTLKVAPI---MAAAAAGILITTRDRQLLVAHEVDE--EHILDLDVLNN-D 111 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~-----------~~~~e~L~~~~~---~~~~GSrIIvTTR~~~V~~~~~~~~--~~~y~v~~L~~-~ 111 (462)
.+.-+|+|||+... ..+++.|..... ..+....||.||...+.+....... ...+++.+++. +
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~ 202 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGE 202 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHH
Confidence 46789999998652 111233332222 2334456888888887665522111 22789999988 5
Q ss_pred HHHHHHHH
Q 043908 112 EALQFFSV 119 (462)
Q Consensus 112 es~~LF~~ 119 (462)
+-.+++..
T Consensus 203 ~i~~i~~~ 210 (272)
T 1d2n_A 203 QLLEALEL 210 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=51.67 E-value=67 Score=30.90 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCCCcc----------------hhHHHhhcCCCCCCCCeEEEEEeCCh-----hHHHHcC
Q 043908 38 LARIIEAAAAATGPPFMVEDRSDRIL----------------TLFTTLKVAPIMAAAAAGILITTRDR-----QLLVAHE 96 (462)
Q Consensus 38 l~~i~~~~~~~~Kr~LLVLDDVw~~~----------------~~~e~L~~~~~~~~~GSrIIvTTR~~-----~V~~~~~ 96 (462)
+..+...... .+..+|+||++.... +++..+.+. .....+-.||.||... .+.. .
T Consensus 132 ~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-~~~~~~v~vI~atn~~~~ld~al~r--R 207 (355)
T 2qp9_X 132 VKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRR--R 207 (355)
T ss_dssp HHHHHHHHHH-TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHC-C---CCEEEEEEESCGGGSCHHHHH--T
T ss_pred HHHHHHHHHH-cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcc-cccCCCeEEEeecCCcccCCHHHHc--c
Confidence 3334443333 578899999997532 111222211 1123456677777644 3333 3
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 97 VDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 97 ~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
.+. .+.+...+.++-.+++..++-.
T Consensus 208 f~~--~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 208 FER--RIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp CCE--EEECCCCCHHHHHHHHHHHHTT
T ss_pred cCE--EEEeCCcCHHHHHHHHHHHHhh
Confidence 444 7899999999999999877643
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=51.30 E-value=13 Score=34.92 Aligned_cols=69 Identities=4% Similarity=-0.052 Sum_probs=44.9
Q ss_pred CCcEEEEeCCCCc-----------chhHHHhhcCCCCCCCCeEEEEEeCCh----------hHHHHcCCCCcceEecCCC
Q 043908 50 GPPFMVEDRSDRI-----------LTLFTTLKVAPIMAAAAAGILITTRDR----------QLLVAHEVDEEHILDLDVL 108 (462)
Q Consensus 50 Kr~LLVLDDVw~~-----------~~~~e~L~~~~~~~~~GSrIIvTTR~~----------~V~~~~~~~~~~~y~v~~L 108 (462)
+.-+|+|||+... .. .+.|.........+.+||.||... .+...++ . .+++.++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~-~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~--~i~~~~~ 204 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEA-IEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA--H--HIEFPDY 204 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHH-HHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE--E--EEEECCC
T ss_pred CCCEEEEEChhhhccCCCcccccHHH-HHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC--e--EEEcCCc
Confidence 4569999999833 22 233333333334566888888643 2333332 3 8999999
Q ss_pred CHHHHHHHHHHhhhC
Q 043908 109 NNDEALQFFSVKAFK 123 (462)
Q Consensus 109 ~~~es~~LF~~~af~ 123 (462)
+.++-.+++...+-.
T Consensus 205 ~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 205 SDEELFEIAGHMLDD 219 (309)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877643
No 185
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=49.44 E-value=1.6e+02 Score=27.20 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=52.0
Q ss_pred HhCCChhHHHHHHHHHHhcCCCcEEEEeCCCCc-------------------chhHHHhhcCCCCCCCCeEEEEEeCChh
Q 043908 30 LFGTSHRNLARIIEAAAAATGPPFMVEDRSDRI-------------------LTLFTTLKVAPIMAAAAAGILITTRDRQ 90 (462)
Q Consensus 30 ~~~~~~~~l~~i~~~~~~~~Kr~LLVLDDVw~~-------------------~~~~e~L~~~~~~~~~GSrIIvTTR~~~ 90 (462)
..|.....+..+...... .+..+|+||++... .+++..+.+.. ...+-+||.||...+
T Consensus 89 ~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQ-AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--TKKNVFIIGATNRPD 165 (301)
T ss_dssp HHTTCTTHHHHHHHHHHH-TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--TTSSEEEEEEESCGG
T ss_pred hcCchHHHHHHHHHHHHh-cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--CCCCEEEEEecCCcc
Confidence 344444455555555544 56789999999741 11222232211 133567888887654
Q ss_pred HHHH--c---CCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 91 LLVA--H---EVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 91 V~~~--~---~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
.+.. . ..+. .+.+...+.++-.+++..+.
T Consensus 166 ~ld~al~r~gRf~~--~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 166 IIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp GSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHH
T ss_pred ccChHHhcCCccce--EEecCCcCHHHHHHHHHHHH
Confidence 3321 1 2334 89999999999999987665
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=47.11 E-value=5.3 Score=35.62 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCcch--h-HHHhhcCCCC-CCCC-eEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHH
Q 043908 50 GPPFMVEDRSDRILT--L-FTTLKVAPIM-AAAA-AGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQ 115 (462)
Q Consensus 50 Kr~LLVLDDVw~~~~--~-~e~L~~~~~~-~~~G-SrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~ 115 (462)
+.-+||+||++.... . .+.+...... ...| .+||+||+. +.+...+.... ++++.+++.++..+
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~--~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGL--TYQLQPMMDDEKLA 181 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSE--EEECCCCCGGGHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCc--eEEeCCCCHHHHHH
Confidence 467999999975421 0 1112111000 0112 257777763 22333332223 89999999999999
Q ss_pred HHHHhhh
Q 043908 116 FFSVKAF 122 (462)
Q Consensus 116 LF~~~af 122 (462)
++...+-
T Consensus 182 ~l~~~~~ 188 (242)
T 3bos_A 182 ALQRRAA 188 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=45.69 E-value=29 Score=32.74 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=43.0
Q ss_pred CCcEEEEeCCCCcc---hhHHHhhcCCC-CCCCCeEEEEEeCC---------hhHHHHcCCCCcceEecCCCCHHHHHHH
Q 043908 50 GPPFMVEDRSDRIL---TLFTTLKVAPI-MAAAAAGILITTRD---------RQLLVAHEVDEEHILDLDVLNNDEALQF 116 (462)
Q Consensus 50 Kr~LLVLDDVw~~~---~~~e~L~~~~~-~~~~GSrIIvTTR~---------~~V~~~~~~~~~~~y~v~~L~~~es~~L 116 (462)
+.-+|+|||+.... ...+.+...+. ....|.+||+||.+ +.+...+.... ++++++ +.++-.++
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~--~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI--LVEIEL-DNKTRFKI 174 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE--EEECCC-CHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce--EEEeCC-CHHHHHHH
Confidence 46799999996532 10112211111 11346678888753 23444443333 899999 99999999
Q ss_pred HHHhhhC
Q 043908 117 FSVKAFK 123 (462)
Q Consensus 117 F~~~af~ 123 (462)
+...+..
T Consensus 175 l~~~~~~ 181 (324)
T 1l8q_A 175 IKEKLKE 181 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987753
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=45.41 E-value=1.9e+02 Score=27.20 Aligned_cols=80 Identities=9% Similarity=0.088 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCcc----------------hhHHHhhcCCCCCCCCeEEEEEeCChh-----HHHHc
Q 043908 37 NLARIIEAAAAATGPPFMVEDRSDRIL----------------TLFTTLKVAPIMAAAAAGILITTRDRQ-----LLVAH 95 (462)
Q Consensus 37 ~l~~i~~~~~~~~Kr~LLVLDDVw~~~----------------~~~e~L~~~~~~~~~GSrIIvTTR~~~-----V~~~~ 95 (462)
.+..+...... .+..+|++||+.... +++..+.+ ......+-.||.||...+ +.+
T Consensus 93 ~~~~lf~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~-~~~~~~~v~vI~atn~~~~ld~al~r-- 168 (322)
T 1xwi_A 93 LVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG-VGVDNDGILVLGATNIPWVLDSAIRR-- 168 (322)
T ss_dssp HHHHHHHHHHH-TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC-SSSCCTTEEEEEEESCTTTSCHHHHH--
T ss_pred HHHHHHHHHHh-cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc-ccccCCCEEEEEecCCcccCCHHHHh--
Confidence 34444444443 578899999997541 11111211 111234556776775432 333
Q ss_pred CCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 96 EVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 96 ~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
..+. .+.+...+.++-.+++..+.-
T Consensus 169 Rf~~--~i~i~~P~~~~r~~il~~~l~ 193 (322)
T 1xwi_A 169 RFEK--RIYIPLPEPHARAAMFKLHLG 193 (322)
T ss_dssp TCCE--EEECCCCCHHHHHHHHHHHHT
T ss_pred hcCe--EEEeCCcCHHHHHHHHHHHHh
Confidence 3444 789999999999999987653
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.89 E-value=32 Score=32.76 Aligned_cols=72 Identities=4% Similarity=0.030 Sum_probs=43.7
Q ss_pred CCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 50 GPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 50 Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
++-++|||++..-.. ..+.+...+.....+.++|+||.+. .+........ ..+++++++.++..+.+...+-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHH
Confidence 566999999976431 0122222222223467877777653 3322221111 2899999999999999987764
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=43.53 E-value=29 Score=33.18 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+|++..-.. -.+.|.........+..+|++|.+. .+........ ..+++.+++.++..+.+...+
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc
Confidence 5677999999986441 1334443333334567877777655 3444432222 289999999999998887664
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.52 E-value=73 Score=28.50 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCc--------------c--hhHHHhhcCCCC--CCCCeEEEEEeCChhHHHH-c----C
Q 043908 40 RIIEAAAAATGPPFMVEDRSDRI--------------L--TLFTTLKVAPIM--AAAAAGILITTRDRQLLVA-H----E 96 (462)
Q Consensus 40 ~i~~~~~~~~Kr~LLVLDDVw~~--------------~--~~~e~L~~~~~~--~~~GSrIIvTTR~~~V~~~-~----~ 96 (462)
.+.+.... ....+|+|||+... . ..+..+...... ...+-.||.||.....+.. . .
T Consensus 89 ~~~~~a~~-~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R 167 (262)
T 2qz4_A 89 SLFKEARA-RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGR 167 (262)
T ss_dssp HHHHHHHH-TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTS
T ss_pred HHHHHHHh-cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCc
Confidence 34444333 45789999999754 1 001122211111 1235677778866543211 1 2
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhhC
Q 043908 97 VDEEHILDLDVLNNDEALQFFSVKAFK 123 (462)
Q Consensus 97 ~~~~~~y~v~~L~~~es~~LF~~~af~ 123 (462)
.+. .+.++.++.++-.+++...+-.
T Consensus 168 ~~~--~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 168 LDR--HVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp CCE--EEECCSCCHHHHHHHHHHHHHH
T ss_pred CCe--EEEeCCcCHHHHHHHHHHHHHh
Confidence 233 7889999999999999877643
No 192
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=40.75 E-value=11 Score=31.90 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCcEEEEeCCCCcc---------hhHHHhhcCCCCCCCCeEEEEEeCChhHHHHcCCC-----CcceEecC
Q 043908 41 IIEAAAAATGPPFMVEDRSDRIL---------TLFTTLKVAPIMAAAAAGILITTRDRQLLVAHEVD-----EEHILDLD 106 (462)
Q Consensus 41 i~~~~~~~~Kr~LLVLDDVw~~~---------~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~~~~~-----~~~~y~v~ 106 (462)
+.+.....+++.+|||||+.... +..+.+..... ..+-.+|.||...........+ ....+.+.
T Consensus 106 ~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~ 183 (195)
T 1jbk_A 106 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVA 183 (195)
T ss_dssp HHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECC
T ss_pred HHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecC
Confidence 33333333667899999997642 11122211111 2234677777766533222111 11168899
Q ss_pred CCCHHHHHHHH
Q 043908 107 VLNNDEALQFF 117 (462)
Q Consensus 107 ~L~~~es~~LF 117 (462)
.++.++..+++
T Consensus 184 ~p~~~~~~~il 194 (195)
T 1jbk_A 184 EPSVEDTIAIL 194 (195)
T ss_dssp CCCHHHHHTTC
T ss_pred CCCHHHHHHHh
Confidence 99988876653
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=35.82 E-value=1.3e+02 Score=29.19 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=40.3
Q ss_pred CCCcEEEEeCCCCc-----------c-----hhHHHhhcCCCCCCCCeEEEEEeCChhHHHH-c--CCCCcceEecCCCC
Q 043908 49 TGPPFMVEDRSDRI-----------L-----TLFTTLKVAPIMAAAAAGILITTRDRQLLVA-H--EVDEEHILDLDVLN 109 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~-----------~-----~~~e~L~~~~~~~~~GSrIIvTTR~~~V~~~-~--~~~~~~~y~v~~L~ 109 (462)
.+.-+|+||||... . +++..+.+........-+||.||...+-+.. . .... .+.+...+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~--~i~i~~p~ 283 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIK--RVYVSLPN 283 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCE--EEECCCCC
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcce--EEEcCCcC
Confidence 45679999999643 0 1111222211111234466767765332211 1 2233 78899999
Q ss_pred HHHHHHHHHHhhhC
Q 043908 110 NDEALQFFSVKAFK 123 (462)
Q Consensus 110 ~~es~~LF~~~af~ 123 (462)
.++-.+++...+-.
T Consensus 284 ~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 284 EETRLLLLKNLLCK 297 (389)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877643
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=35.70 E-value=1.5e+02 Score=29.37 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCCCcc------------hhHHHhhcCCCC---CCCCeEEEEEeCChhHHHH-c--CCCC
Q 043908 38 LARIIEAAAAATGPPFMVEDRSDRIL------------TLFTTLKVAPIM---AAAAAGILITTRDRQLLVA-H--EVDE 99 (462)
Q Consensus 38 l~~i~~~~~~~~Kr~LLVLDDVw~~~------------~~~e~L~~~~~~---~~~GSrIIvTTR~~~V~~~-~--~~~~ 99 (462)
+..+...... .+..+|+||++.... .....+...... ...+-.||.||.....+.. . ..+.
T Consensus 216 ~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~ 294 (444)
T 2zan_A 216 VKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEK 294 (444)
T ss_dssp HHHHHHHHHH-SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCE
T ss_pred HHHHHHHHHH-cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcce
Confidence 3444444443 577899999997541 112223333322 2345667777765432211 0 3333
Q ss_pred cceEecCCCCHHHHHHHHHHhhh
Q 043908 100 EHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 100 ~~~y~v~~L~~~es~~LF~~~af 122 (462)
.+.+...+.++-.++|..++-
T Consensus 295 --~i~i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 295 --RIYIPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp --EEECCCCCHHHHHHHHHHHHT
T ss_pred --EEEeCCcCHHHHHHHHHHHHh
Confidence 788999999999999987753
No 195
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=35.58 E-value=24 Score=31.35 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=24.6
Q ss_pred ccCCCcEEEecCCCCCCc-----cCccCCCCCCcCEEeecCCC
Q 043908 217 HLSGLVQLTLKGCKNLSS-----LPATISSLKSLRTLELSGCS 254 (462)
Q Consensus 217 ~L~~L~~L~l~~c~~l~~-----LP~~i~~L~~L~~L~l~~c~ 254 (462)
+-+.|+.|+|++++.++. |-+.+..=+.|+.|+|++|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 345799999987545542 33444445678888887754
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=35.17 E-value=90 Score=29.95 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=41.1
Q ss_pred CCCcEEEEeCCCCc----------------chhHHHhhcCCCCCCCCeEEEEEeCChhHH-HHc--CCCCcceEecCCCC
Q 043908 49 TGPPFMVEDRSDRI----------------LTLFTTLKVAPIMAAAAAGILITTRDRQLL-VAH--EVDEEHILDLDVLN 109 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~----------------~~~~e~L~~~~~~~~~GSrIIvTTR~~~V~-~~~--~~~~~~~y~v~~L~ 109 (462)
.+..+|+|||+... .+++..+.+.......+-.||.||...+.+ ... .... .+.+...+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~--~i~i~~p~ 252 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK--RLYIPLPE 252 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCE--EEECCCCC
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCce--EEEeCCcC
Confidence 56789999999532 012222322222223355677677654321 111 2333 78899999
Q ss_pred HHHHHHHHHHhhh
Q 043908 110 NDEALQFFSVKAF 122 (462)
Q Consensus 110 ~~es~~LF~~~af 122 (462)
.++-.+++...+-
T Consensus 253 ~~~r~~il~~~~~ 265 (357)
T 3d8b_A 253 ASARKQIVINLMS 265 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987664
No 197
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=30.95 E-value=2.1e+02 Score=26.89 Aligned_cols=71 Identities=4% Similarity=-0.022 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCC---cchhHHHhhcCCCCCCCCeEEEEEeCC-------hhHHHHcCCCCcceEecCCCCHHHHHHHHH
Q 043908 49 TGPPFMVEDRSDR---ILTLFTTLKVAPIMAAAAAGILITTRD-------RQLLVAHEVDEEHILDLDVLNNDEALQFFS 118 (462)
Q Consensus 49 ~Kr~LLVLDDVw~---~~~~~e~L~~~~~~~~~GSrIIvTTR~-------~~V~~~~~~~~~~~y~v~~L~~~es~~LF~ 118 (462)
+++=++|+|++.. ... ++.|........+++.+|++|.. ..+........ .+++..+++.++-.+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~-~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAI-NEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CSCEEEEEECCSSCCCTTH-HHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHH-HHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 6677889999865 234 56665444444567887776643 35666544332 289999999888887776
Q ss_pred Hhh
Q 043908 119 VKA 121 (462)
Q Consensus 119 ~~a 121 (462)
..+
T Consensus 153 ~~~ 155 (343)
T 1jr3_D 153 ARA 155 (343)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 198
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=26.56 E-value=60 Score=30.25 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCCCcch-hHHHhhcCCCC------------------CCCCeEEEEEeCChhHH-HHc--CCCCcceEecC
Q 043908 49 TGPPFMVEDRSDRILT-LFTTLKVAPIM------------------AAAAAGILITTRDRQLL-VAH--EVDEEHILDLD 106 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~-~~e~L~~~~~~------------------~~~GSrIIvTTR~~~V~-~~~--~~~~~~~y~v~ 106 (462)
.+.-+|+|||+..... ..+.+...... ..++.++|.||...... ... .... ++.+.
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~--~i~l~ 166 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI--VEHLE 166 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC--EEECC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE--EEecC
Confidence 4678999999976541 02222211100 01245677776644321 111 1122 89999
Q ss_pred CCCHHHHHHHHHHhhhC
Q 043908 107 VLNNDEALQFFSVKAFK 123 (462)
Q Consensus 107 ~L~~~es~~LF~~~af~ 123 (462)
+++.+|..+++...+..
T Consensus 167 ~~~~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARL 183 (324)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999877643
No 199
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.52 E-value=1e+02 Score=31.40 Aligned_cols=72 Identities=7% Similarity=0.006 Sum_probs=41.0
Q ss_pred CCCcEEEEeCCCCcch----hHHHhhcCCCCCCCCeEEEEEeCChh--HHHHcCCCCcceEecCCCCHHHHHHHHHHhhh
Q 043908 49 TGPPFMVEDRSDRILT----LFTTLKVAPIMAAAAAGILITTRDRQ--LLVAHEVDEEHILDLDVLNNDEALQFFSVKAF 122 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~~----~~e~L~~~~~~~~~GSrIIvTTR~~~--V~~~~~~~~~~~y~v~~L~~~es~~LF~~~af 122 (462)
+++.+|++|||..... .++.+..... ..+.+||++|.+.. .+...... ...+++++++.++..+.+...+.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r-~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRV-CLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTT-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhc-eEEEEeCCCCHHHHHHHHHHHHH
Confidence 4678999999975321 0122221111 12345666665432 11222211 12799999999999999987765
Q ss_pred C
Q 043908 123 K 123 (462)
Q Consensus 123 ~ 123 (462)
.
T Consensus 224 ~ 224 (516)
T 1sxj_A 224 R 224 (516)
T ss_dssp H
T ss_pred H
Confidence 4
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=23.80 E-value=51 Score=31.20 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCCcEEEEeCCCCcc--hhHHHhhcCCCCCCCCeEEEEEeCCh-hHHHHcCCCCcceEecCCCCHHHHHHHHHHhh
Q 043908 49 TGPPFMVEDRSDRIL--TLFTTLKVAPIMAAAAAGILITTRDR-QLLVAHEVDEEHILDLDVLNNDEALQFFSVKA 121 (462)
Q Consensus 49 ~Kr~LLVLDDVw~~~--~~~e~L~~~~~~~~~GSrIIvTTR~~-~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 121 (462)
+++-++|+|++..-. . .+.|........+.+++|++|.+. .+....... +++++++++++..+.+.+.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 456689999997644 3 344444333334577877766544 455554433 79999999999999888765
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=22.16 E-value=2.5e+02 Score=28.34 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCc--------c--------hhHHHhhcCCCCCCCCeEEEEEeCChhH-----HHHcCCC
Q 043908 40 RIIEAAAAATGPPFMVEDRSDRI--------L--------TLFTTLKVAPIMAAAAAGILITTRDRQL-----LVAHEVD 98 (462)
Q Consensus 40 ~i~~~~~~~~Kr~LLVLDDVw~~--------~--------~~~e~L~~~~~~~~~GSrIIvTTR~~~V-----~~~~~~~ 98 (462)
...+.... ++..+|+||++... . +++..+-+.. ...+-+||.||...+- .......
T Consensus 288 ~~f~~A~~-~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~--~~~~v~vIaaTn~~~~Ld~al~r~gRf~ 364 (489)
T 3hu3_A 288 KAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFD 364 (489)
T ss_dssp HHHHHHHH-TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--TTSCEEEEEEESCGGGBCGGGGSTTSSC
T ss_pred HHHHHHHh-cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--cCCceEEEEecCCccccCHHHhCCCcCc
Confidence 34444443 56789999999311 1 1222222211 1234567777765532 2212333
Q ss_pred CcceEecCCCCHHHHHHHHHHhhhCCCC-CCccHHHHHHH
Q 043908 99 EEHILDLDVLNNDEALQFFSVKAFKSHR-PVGDYVELSER 137 (462)
Q Consensus 99 ~~~~y~v~~L~~~es~~LF~~~af~~~~-~~~~~~~l~~~ 137 (462)
. .+.+...+.++-.+++..++-.... ...++.+++..
T Consensus 365 ~--~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~ 402 (489)
T 3hu3_A 365 R--EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (489)
T ss_dssp E--EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHT
T ss_pred e--EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Confidence 3 7999999999999999987643222 33346666653
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=21.43 E-value=81 Score=29.48 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCcc-h-hHHHhhcCCCCCCCCeEEEEEeCChh-----HHHHcCCCCcceEecCCCCHHHHHHHH
Q 043908 50 GPPFMVEDRSDRIL-T-LFTTLKVAPIMAAAAAGILITTRDRQ-----LLVAHEVDEEHILDLDVLNNDEALQFF 117 (462)
Q Consensus 50 Kr~LLVLDDVw~~~-~-~~e~L~~~~~~~~~GSrIIvTTR~~~-----V~~~~~~~~~~~y~v~~L~~~es~~LF 117 (462)
++-++++||+.... . ..+.|.........+.++|+||.... +...+ . ++++++++.+|-.+++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~--~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---R--VITFGQPTDEDKIEMM 174 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---E--EEECCCCCHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---c--EEEeCCCCHHHHHHHH
Confidence 67799999998654 1 13333332222234568888887654 22322 2 7999999988854443
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=20.98 E-value=5.1e+02 Score=24.10 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=39.5
Q ss_pred cEEEEeCCCCcch-hHHHhhcCCCCCCCCeEEEEEeCC-----------------hhHHHHcCCCCcceEecCCCCHHHH
Q 043908 52 PFMVEDRSDRILT-LFTTLKVAPIMAAAAAGILITTRD-----------------RQLLVAHEVDEEHILDLDVLNNDEA 113 (462)
Q Consensus 52 ~LLVLDDVw~~~~-~~e~L~~~~~~~~~GSrIIvTTR~-----------------~~V~~~~~~~~~~~y~v~~L~~~es 113 (462)
-+|+||++..... ..+.|.......... .++++|.. +.+...+ . .+++.+++.++.
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~--~i~~~~~~~~e~ 264 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---L--IVSTTPYSEKDT 264 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---E--EEEECCCCHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---c--EEEecCCCHHHH
Confidence 4999999976531 134444433333323 44444431 2333322 2 689999999999
Q ss_pred HHHHHHhhhC
Q 043908 114 LQFFSVKAFK 123 (462)
Q Consensus 114 ~~LF~~~af~ 123 (462)
.+++...+-.
T Consensus 265 ~~il~~~~~~ 274 (368)
T 3uk6_A 265 KQILRIRCEE 274 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877643
Done!