BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043909
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human
L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human
L-Acbp
Length = 87
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
Q EFE+ AE+ + L ++E L +YG YKQATVG +NT
Sbjct: 3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded
Human Acbp
Length = 86
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
Q EFE+ AE+ + L ++E L +YG YKQATVG +NT
Sbjct: 2 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 41
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVN 72
Q++FE + K L + NE KL LY LYKQAT GP N
Sbjct: 17 QKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCN 55
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme
A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A
Binding Protein From Bovine Liver. Structural
Refinement Using Heteronuclear Multidimensional Nmr
Spectroscopy
Length = 86
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
Q EF++ AE+ K L +E L +Y YKQATVG +NT
Sbjct: 2 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINT 41
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
Q EF++ AE+ K L ++ L +Y YKQATVG +NT
Sbjct: 2 QAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINT 41
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
M LQ +F+ AE + L + LYGLYKQA VG +N +
Sbjct: 2 MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIA 45
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein
From Yeast
Length = 86
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 37 FEEYAEKAKTLPESTTNENKLILYGLYKQATVG 69
FEE A+ LP + + L LY LYKQATVG
Sbjct: 5 FEEKAKAVNELPTKPSTDELLELYALYKQATVG 37
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 29 GKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
G GL E FE+ A + L + + E L LY YKQ VG NT
Sbjct: 4 GSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNT 48
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 37 FEEYAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTS 74
F++ E ++LP+ T + +L Y +KQATVG VN S
Sbjct: 8 FDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNIS 49
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 38 EEYAEKAKTLPESTT----NENKLILYGLYKQATVGPVN 72
+++ K + +TT N++KL Y YKQATVG N
Sbjct: 12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCN 50
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 33 LQEEFEEYAEKAKTLPESTT--NENKLILYGLYKQATVGPVNT 73
+ + FEE LP + NE KL LY YKQ+T+G N
Sbjct: 2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNI 44
>pdb|3PL5|A Chain A, Fatty Acid Binding Protein
Length = 320
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 11 VRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQA---- 66
V SH+ S + +G M F+ + LPES T EN + + GL Q
Sbjct: 15 VPRGSHMASMTGGQQMGRGSM----TFKILTDSTADLPESWTQENDVQVLGLTVQLDGIT 70
Query: 67 --TVGP 70
TVGP
Sbjct: 71 YETVGP 76
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 37 FEEYAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTS 74
FE + ++LP++ TNE L Y YKQAT GP S
Sbjct: 28 FEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLS 69
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 33 LQEEFEEYAEKAKTLPES----TTNENKLILYGLYKQATVGPV 71
Q++F+ + LP++ + E L Y YKQAT+GP
Sbjct: 8 CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPC 50
>pdb|1WYT|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 438
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 8 KRYVRS-ASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQA 66
K +VR L S+ + R+G + + E+Y +AK TTN L G A
Sbjct: 276 KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLA 335
Query: 67 TVGP 70
+GP
Sbjct: 336 ALGP 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.122 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,009,744
Number of Sequences: 62578
Number of extensions: 60933
Number of successful extensions: 126
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 20
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 45 (21.9 bits)