Query 043909
Match_columns 74
No_of_seqs 106 out of 688
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00435 ACBP Acyl CoA binding 99.6 1.8E-16 3.9E-21 100.3 4.4 42 33-74 1-42 (85)
2 PTZ00458 acyl CoA binding prot 99.6 2E-16 4.3E-21 101.8 4.6 41 34-74 2-44 (90)
3 PF00887 ACBP: Acyl CoA bindin 99.6 1.1E-15 2.5E-20 95.5 3.7 42 33-74 1-44 (87)
4 KOG0817 Acyl-CoA-binding prote 99.6 1.6E-15 3.5E-20 104.5 4.6 44 31-74 3-46 (142)
5 COG4281 ACB Acyl-CoA-binding p 99.3 1.2E-12 2.5E-17 84.1 4.3 41 33-73 2-42 (87)
6 KOG3878 Protein involved in ma 86.4 1.6 3.4E-05 35.1 4.8 44 30-73 29-75 (469)
7 PF00373 FERM_M: FERM central 71.6 6.3 0.00014 24.3 3.2 41 32-72 10-50 (126)
8 smart00295 B41 Band 4.1 homolo 57.8 15 0.00032 24.3 3.2 40 34-73 100-139 (207)
9 KOG1888 Putative phosphoinosit 50.2 4.8 0.0001 35.1 -0.2 30 17-47 342-371 (868)
10 TIGR01280 xseB exodeoxyribonuc 47.1 37 0.0008 20.4 3.4 31 31-61 1-32 (67)
11 COG5009 MrcA Membrane carboxyp 40.9 22 0.00048 30.9 2.3 51 9-60 114-164 (797)
12 PF04049 APC8: Anaphase promot 40.3 44 0.00096 22.5 3.3 27 35-63 88-114 (142)
13 PRK00977 exodeoxyribonuclease 38.3 77 0.0017 19.6 3.9 33 29-61 8-41 (80)
14 PF05476 PET122: PET122; Inte 37.0 56 0.0012 25.1 3.7 28 33-60 22-49 (267)
15 PF10440 WIYLD: Ubiquitin-bind 36.8 26 0.00057 21.4 1.6 28 34-61 8-40 (65)
16 PRK14069 exodeoxyribonuclease 32.4 95 0.0021 20.2 3.8 33 29-61 6-39 (95)
17 TIGR02074 PBP_1a_fam penicilli 31.3 40 0.00088 27.1 2.3 51 9-60 49-99 (530)
18 PRK14067 exodeoxyribonuclease 30.4 1E+02 0.0022 19.2 3.6 32 30-61 6-38 (80)
19 TIGR02071 PBP_1b penicillin-bi 29.6 47 0.001 28.1 2.4 53 8-61 193-245 (730)
20 PRK14063 exodeoxyribonuclease 28.1 1.1E+02 0.0024 18.8 3.4 31 31-61 5-36 (76)
21 PRK14850 penicillin-binding pr 27.6 58 0.0013 27.8 2.7 58 7-65 202-262 (764)
22 PRK14068 exodeoxyribonuclease 27.1 1.1E+02 0.0025 18.8 3.3 32 30-61 5-37 (76)
23 PRK09506 mrcB bifunctional gly 26.8 61 0.0013 28.1 2.7 58 7-65 256-316 (830)
24 PRK13481 glycosyltransferase; 26.5 82 0.0018 23.4 3.0 50 11-61 93-142 (232)
25 COG4508 Dimeric dUTPase [Carbo 26.5 1.1E+02 0.0025 21.7 3.6 32 32-63 97-128 (161)
26 PRK15443 pduE propanediol dehy 26.4 70 0.0015 22.4 2.5 28 30-62 63-90 (138)
27 PRK14064 exodeoxyribonuclease 25.9 1.3E+02 0.0028 18.4 3.4 31 31-61 6-37 (75)
28 PF00912 Transgly: Transglycos 25.8 34 0.00074 24.1 0.9 54 7-61 59-112 (178)
29 TIGR02073 PBP_1c penicillin-bi 25.3 76 0.0017 26.7 3.0 52 9-61 80-131 (727)
30 PRK00056 mtgA monofunctional b 24.3 64 0.0014 23.9 2.1 52 9-61 107-158 (236)
31 KOG0972 Huntingtin interacting 24.2 26 0.00057 27.8 0.1 12 58-69 291-302 (384)
32 TIGR02070 mono_pep_trsgly mono 23.8 74 0.0016 23.5 2.4 52 9-61 102-153 (224)
33 PRK11636 mrcA penicillin-bindi 23.1 1.2E+02 0.0025 26.4 3.7 52 9-61 113-164 (850)
34 smart00684 DM15 Tandem repeat 21.8 1.5E+02 0.0034 16.1 3.3 28 35-63 8-36 (39)
35 PF15124 DUF4563: Domain of un 21.5 43 0.00093 24.2 0.7 14 55-68 159-172 (178)
36 KOG4100 Uncharacterized conser 21.0 2E+02 0.0044 19.8 3.9 48 9-67 59-109 (125)
No 1
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.64 E-value=1.8e-16 Score=100.32 Aligned_cols=42 Identities=64% Similarity=0.826 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
|++.|++|+++|++++..+++|++|+|||||||||+|||+.+
T Consensus 1 ~~~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~ 42 (85)
T cd00435 1 LQEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTE 42 (85)
T ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCC
Confidence 478999999999999999999999999999999999999864
No 2
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.64 E-value=2e-16 Score=101.77 Aligned_cols=41 Identities=41% Similarity=0.555 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCC--CCCHHHHHHHHhhhcccccCCCCCC
Q 043909 34 QEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 34 ~e~F~~A~~~vk~l~~--~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
.+.|++|+++|+.++. .+++|++|+|||||||||+|||++|
T Consensus 2 ~~~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~ 44 (90)
T PTZ00458 2 ADLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIK 44 (90)
T ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCC
Confidence 5789999999998877 7999999999999999999999864
No 3
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.58 E-value=1.1e-15 Score=95.53 Aligned_cols=42 Identities=50% Similarity=0.736 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhcCCC--CCCHHHHHHHHhhhcccccCCCCCC
Q 043909 33 LQEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~~--~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
|+++|+.|+++|+.++. .+++|++|+|||||||||+|||+++
T Consensus 1 Le~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~ 44 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTP 44 (87)
T ss_dssp HHHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-
T ss_pred CHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCC
Confidence 68999999999999999 9999999999999999999999853
No 4
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]
Probab=99.58 E-value=1.6e-15 Score=104.51 Aligned_cols=44 Identities=52% Similarity=0.715 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
+.+...|+.|++.|++++..+++|++|.|||||||||+|||++|
T Consensus 3 ~~~~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~ 46 (142)
T KOG0817|consen 3 ATLEAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTP 46 (142)
T ss_pred chHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCC
Confidence 45789999999999999999999999999999999999999985
No 5
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.34 E-value=1.2e-12 Score=84.06 Aligned_cols=41 Identities=37% Similarity=0.589 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~ 73 (74)
+...|+.|...|+.++.+|+++++|+||+||||+|+||+++
T Consensus 2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ 42 (87)
T COG4281 2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDG 42 (87)
T ss_pred hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCC
Confidence 56789999999999999999999999999999999999986
No 6
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=1.6 Score=35.11 Aligned_cols=44 Identities=30% Similarity=0.301 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHhcCCC---CCCHHHHHHHHhhhcccccCCCCC
Q 043909 30 KMGLQEEFEEYAEKAKTLPE---STTNENKLILYGLYKQATVGPVNT 73 (74)
Q Consensus 30 ~m~l~e~F~~A~~~vk~l~~---~~s~e~kL~LYglYKQAT~Gdcn~ 73 (74)
-..|++-+..|+.+-|.... .++-|++|+|-+|-||+-.|+.|+
T Consensus 29 Gf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial~kQv~~Gp~n~ 75 (469)
T KOG3878|consen 29 GFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIALKKQVALGPFNT 75 (469)
T ss_pred CCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhhHhhhhcCCCCc
Confidence 35689999999999986655 589999999999999999999985
No 7
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=71.59 E-value=6.3 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCC
Q 043909 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVN 72 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn 72 (74)
.+.--|..+...|-...-..+.++-++|=||.=|+..||++
T Consensus 10 ~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~ 50 (126)
T PF00373_consen 10 TRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYN 50 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 35566788888887777789999999999999999999987
No 8
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=57.85 E-value=15 Score=24.33 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73 (74)
Q Consensus 34 ~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~ 73 (74)
.--|..+...+....-+.+.|+.+.|=||.-|+..||++.
T Consensus 100 ~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~ 139 (207)
T smart00295 100 NLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDE 139 (207)
T ss_pred HHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 3446777777776666788999999999999999999864
No 9
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=50.20 E-value=4.8 Score=35.06 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=26.5
Q ss_pred hhhhhhhccCCCCCCChHHHHHHHHHHHhcC
Q 043909 17 LNSQISEKNKRKGKMGLQEEFEEYAEKAKTL 47 (74)
Q Consensus 17 ~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l 47 (74)
+| +||.+++|+-++-|-++|+.|+.+++..
T Consensus 342 lN-LIKt~ekr~~E~IL~~eF~~ai~yLNqf 371 (868)
T KOG1888|consen 342 LN-LIKTNEKRPRESILREEFENAIDYLNQF 371 (868)
T ss_pred EE-eeccccCCchhHHHHHHHHHHHHHHhcc
Confidence 44 8899999999999999999999999844
No 10
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=47.10 E-value=37 Score=20.37 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHhcCC-CCCCHHHHHHHHh
Q 043909 31 MGLQEEFEEYAEKAKTLP-ESTTNENKLILYG 61 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~-~~~s~e~kL~LYg 61 (74)
|+.++.|.+.-++|+.+- +.++-|+.|.+|.
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~~~l~Leesl~lye 32 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLESGDLALEEALNLFE 32 (67)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 455666666666666664 3567777776663
No 11
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=40.93 E-value=22 Score=30.91 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=35.3
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILY 60 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LY 60 (74)
+.+.-|++||+|+--.==-+++-+++.++.+|.-.++- -..++.++-|+||
T Consensus 114 ~~~~GaSTITQQvAkNf~Ltsertl~RKikEa~LA~~I-E~~lsKdeILELY 164 (797)
T COG5009 114 GRSQGASTITQQVAKNFFLSSERTLERKIKEALLAIRI-EQSLSKDEILELY 164 (797)
T ss_pred CccCCccHHHHHHHHHhccCchhHHHHHHHHHHHHHHH-HHhhcHHHHHHHH
Confidence 35667899999983322223455678888877665542 3458999999999
No 12
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=40.33 E-value=44 Score=22.49 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Q 043909 35 EEFEEYAEKAKTLPESTTNENKLILYGLY 63 (74)
Q Consensus 35 e~F~~A~~~vk~l~~~~s~e~kL~LYglY 63 (74)
.+|++|+.+++.-. -+....|.+|+.|
T Consensus 88 kEy~RaA~~L~~~~--s~~~~FL~lYs~Y 114 (142)
T PF04049_consen 88 KEYDRAAHVLKDCK--SPKALFLRLYSRY 114 (142)
T ss_pred hHHHHHHHHHccCC--CchHHHHHHHHHH
Confidence 57888888887655 3556689999987
No 13
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.31 E-value=77 Score=19.59 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHh
Q 043909 29 GKMGLQEEFEEYAEKAKTLPE-STTNENKLILYG 61 (74)
Q Consensus 29 ~~m~l~e~F~~A~~~vk~l~~-~~s~e~kL~LYg 61 (74)
..++.++.|...-++|+.+-. .++-|+.+.+|.
T Consensus 8 ~~~sfEea~~~LEeIv~~LE~~~l~Lees~~lye 41 (80)
T PRK00977 8 KPLSFEEALAELEEIVTRLESGDLPLEESLAAFE 41 (80)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 457788888888888888864 789999988884
No 14
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=36.98 E-value=56 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 043909 33 LQEEFEEYAEKAKTLPESTTNENKLILY 60 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~~~~s~e~kL~LY 60 (74)
|..+|+.|...++..+..-.+...|.+|
T Consensus 22 LNr~Fd~vL~~~R~~p~~emd~~fLq~y 49 (267)
T PF05476_consen 22 LNREFDDVLAELRQIPVDEMDYSFLQLY 49 (267)
T ss_pred hhhhHHHHHHHHHcCcHhHhhHHHHHHH
Confidence 6889999999999998877888888887
No 15
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=36.82 E-value=26 Score=21.40 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCC-----CCCHHHHHHHHh
Q 043909 34 QEEFEEYAEKAKTLPE-----STTNENKLILYG 61 (74)
Q Consensus 34 ~e~F~~A~~~vk~l~~-----~~s~e~kL~LYg 61 (74)
++++++|+..++.+.- .+.-..+|++|+
T Consensus 8 ~~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~ 40 (65)
T PF10440_consen 8 NERIDAALDAMRQLGFSKKQVRPVLKNLLKLYD 40 (65)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4899999999997763 366778888886
No 16
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.41 E-value=95 Score=20.18 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHh
Q 043909 29 GKMGLQEEFEEYAEKAKTLP-ESTTNENKLILYG 61 (74)
Q Consensus 29 ~~m~l~e~F~~A~~~vk~l~-~~~s~e~kL~LYg 61 (74)
.+++.++.+...=++|+.+- +.++-|+-|.+|-
T Consensus 6 ~~~sFEeal~~LEeIV~~LEsgdl~LEesl~lye 39 (95)
T PRK14069 6 SKISFEDALRELEQIAEKLERQDFSLEESLKAYE 39 (95)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46778888888888888774 4688888888874
No 17
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.
Probab=31.33 E-value=40 Score=27.05 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=34.6
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILY 60 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LY 60 (74)
+-++-+++||+|+-..--...+.++..++.+++-.+ .+...+|.++-|++|
T Consensus 49 ~~~~G~STitqQ~~k~~~~~~~~t~~rK~~E~~~a~-~le~~~sK~~Il~~Y 99 (530)
T TIGR02074 49 GVLEGGSTITQQLAKNLYLTNERTITRKIQEALLAL-KLEQKLSKDEILELY 99 (530)
T ss_pred CCCCCcCcHHHHHHHHhccCCCCCHHHHHHHHHHHH-HHHHhcCHHHHHHHH
Confidence 445678999988854433334556777776665433 344568999999999
No 18
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.38 E-value=1e+02 Score=19.22 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHh
Q 043909 30 KMGLQEEFEEYAEKAKTLP-ESTTNENKLILYG 61 (74)
Q Consensus 30 ~m~l~e~F~~A~~~vk~l~-~~~s~e~kL~LYg 61 (74)
+++.++.|++.=++|+.+- ..++-|+.+.+|.
T Consensus 6 ~~sfEeal~~LEeIV~~LE~~~l~Lees~~lye 38 (80)
T PRK14067 6 TADFEQQLARLQEIVDALEGGDLPLEESVALYK 38 (80)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4667777777777777774 3677787777773
No 19
>TIGR02071 PBP_1b penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B.
Probab=29.58 E-value=47 Score=28.06 Aligned_cols=53 Identities=21% Similarity=0.132 Sum_probs=36.3
Q ss_pred hhHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 8 KRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
.+.++-+++||+|+------+.+-++..+|.+|.-.++ +-...|.|+-|++|=
T Consensus 193 g~~~qGgSTiTQQlvKn~~l~~ert~~RK~~E~~lA~~-lE~~~sKdeILe~YL 245 (730)
T TIGR02071 193 GRTVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALI-LDARYSKDRILELYL 245 (730)
T ss_pred CCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHh
Confidence 45567889999888433222334568888877765553 345689999999993
No 20
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.07 E-value=1.1e+02 Score=18.76 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHHhcCC-CCCCHHHHHHHHh
Q 043909 31 MGLQEEFEEYAEKAKTLP-ESTTNENKLILYG 61 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~-~~~s~e~kL~LYg 61 (74)
++.++.|...-.+|+.+- +.+|-|+-+.+|.
T Consensus 5 ~sfEeal~~LE~Iv~~LE~~~l~Leesl~lye 36 (76)
T PRK14063 5 LSFEEAISQLEHLVSKLEQGDVPLEEAISYFK 36 (76)
T ss_pred cCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 556666666666666664 3567777666663
No 21
>PRK14850 penicillin-binding protein 1b; Provisional
Probab=27.61 E-value=58 Score=27.83 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=38.7
Q ss_pred hhhHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh---hhcc
Q 043909 7 SKRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG---LYKQ 65 (74)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg---lYKQ 65 (74)
+.+.++-+++||+|+------+.+-++..++.+|.-.++ +....|.|+-|++|= +|.|
T Consensus 202 ~g~~~qGgSTITQQlvKn~~l~~erT~~RK~~E~~lAl~-LE~~ysKdeILe~YLN~vy~G~ 262 (764)
T PRK14850 202 SGHTIQGGSTLTQQLVKNLFLTNTRSLWRKINEIYMALI-LDRFYSKDRILELYLNEVYLGQ 262 (764)
T ss_pred cCCccCCccHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHhhhcccCC
Confidence 345677899999888433222334568888877766553 345689999999993 4554
No 22
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.15 E-value=1.1e+02 Score=18.83 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHh
Q 043909 30 KMGLQEEFEEYAEKAKTLPE-STTNENKLILYG 61 (74)
Q Consensus 30 ~m~l~e~F~~A~~~vk~l~~-~~s~e~kL~LYg 61 (74)
.++.++.|...-++|..+-. .++-|+-|.+|-
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~Leesl~lye 37 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSLEESLDLYQ 37 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35677788777788877754 678888877773
No 23
>PRK09506 mrcB bifunctional glycosyl transferase/transpeptidase; Reviewed
Probab=26.76 E-value=61 Score=28.07 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=39.3
Q ss_pred hhhHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh---hhcc
Q 043909 7 SKRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG---LYKQ 65 (74)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg---lYKQ 65 (74)
+.+.++-+++||+|+------+.+-++..+|.+|.-.+. +-...|.|+-|++|= ||.|
T Consensus 256 ~g~~~qGGSTITQQLvKn~~l~~erTl~RK~~E~~lAl~-LE~~ysKdeILe~YLN~vy~G~ 316 (830)
T PRK09506 256 AGRTVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALI-MDARYSKDRILELYLNEVYLGQ 316 (830)
T ss_pred cCCcccccchHHHHHHHHhccCCCCcHHHHHHHHHHHHH-HHHhcCHHHHHHHHhhhcccCC
Confidence 445678899999887432222345678888887765543 345689999999993 4554
No 24
>PRK13481 glycosyltransferase; Provisional
Probab=26.53 E-value=82 Score=23.41 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=32.8
Q ss_pred HhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 11 VRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
++-+++||+|+-----...+-++..++.+++-.+ .+-...|.++-|++|-
T Consensus 93 ~~GgSTITQQlaKn~~l~~~rt~~RK~~E~~~A~-~lE~~~SK~eILe~YL 142 (232)
T PRK13481 93 VQGGSTITQQVVKNYFYDNERSFTRKVKELFVAH-RVEKQYSKNEILSFYL 142 (232)
T ss_pred CCCcCcHHHHHHHhhccCCCCCHHHHHHHHHHHH-HHHHHCCHHHHHHHHH
Confidence 3788999988843222233456777776665433 3344689999999984
No 25
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=26.51 E-value=1.1e+02 Score=21.69 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Q 043909 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLY 63 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglY 63 (74)
++.|+|-.....+..+-..+|.|.-+.||.+|
T Consensus 97 ni~EQFl~vFi~I~ef~~~~sk~~~~tlfs~y 128 (161)
T COG4508 97 NINEQFLAVFISIAEFMKKPSKESILTLFSLY 128 (161)
T ss_pred cHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 47899998888888888889999999999988
No 26
>PRK15443 pduE propanediol dehydratase small subunit; Provisional
Probab=26.37 E-value=70 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Q 043909 30 KMGLQEEFEEYAEKAKTLPESTTNENKLILYGL 62 (74)
Q Consensus 30 ~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYgl 62 (74)
.-.+...|..|++.+ ..++|..|++|-.
T Consensus 63 r~~la~NfrRAAELt-----~vpD~rvLeiYna 90 (138)
T PRK15443 63 RPQLAMNFRRAAELT-----AVPDDRILEIYNA 90 (138)
T ss_pred CHHHHHHHHHHHhcc-----CCCHHHHHHHHHh
Confidence 444788899998876 4688888888864
No 27
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.90 E-value=1.3e+02 Score=18.44 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHhcCC-CCCCHHHHHHHHh
Q 043909 31 MGLQEEFEEYAEKAKTLP-ESTTNENKLILYG 61 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~-~~~s~e~kL~LYg 61 (74)
++.++.|...-++|+.+- +.++-|+-|.+|-
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye 37 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSASLEDSLDMYQ 37 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 466777777777777774 3677777777763
No 28
>PF00912 Transgly: Transglycosylase; InterPro: IPR001264 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 51 GT51 from CAZY comprises enzymes with only one known activity; murein polymerases (2.4 from EC). These enzymes utilise MurNAc-GlcNAc-P-P-lipid II as the sugar donor. The family includes the bifunctional penicillin-binding proteins that have a transglycosylase (N terminus) and transpeptidase (C terminus) domain [] and the monofunctional biosynthetic peptidoglycan transglycosylases [].; GO: 0003824 catalytic activity, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall; PDB: 3VMT_A 3VMS_B 3VMQ_A 3VMR_A 3D3H_A 3NB7_A 3NB6_A 2OQO_A 2V2F_A 3HZS_A ....
Probab=25.78 E-value=34 Score=24.08 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=34.8
Q ss_pred hhhHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 7 SKRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
+.+.++-+++||+|+-.---...+-++..++.+++-.+ .+....+.++-|++|-
T Consensus 59 ~~~~~~GgSTItqQlak~~~~~~~~t~~rK~~E~~~A~-~le~~~sK~~ILe~YL 112 (178)
T PF00912_consen 59 SGGRVQGGSTITQQLAKNLFLSNERTLRRKLREAILAL-RLERRYSKDEILELYL 112 (178)
T ss_dssp SSTTTTTSSHHHHHHHHHHTTSSSSSHHHHHHHHHHHH-HHHHHSHHHHHHHHHH
T ss_pred cCcCCccceeHHHHHHHHHHccccchhhHHHHHHHHHH-HHHHhcCHHHHHHHHH
Confidence 34566778999988754433333456777776655433 2234578999999973
No 29
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=25.26 E-value=76 Score=26.71 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=33.8
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
+-++-+++||+|+-----...+-++..++.++.-.++ +-..+|.|+-|++|=
T Consensus 80 ~~~qGgSTITqQlak~~~~~~~rt~~rK~~E~~~A~~-lE~~~sK~eILe~YL 131 (727)
T TIGR02073 80 RRVSGGSTLTMQLARLLDPELSRTLTGKLRQMWRAIQ-LEARYSKREILEAYL 131 (727)
T ss_pred CccCccchHHHHHHhhccCCCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHH
Confidence 3456789999888433222334457777766554332 345689999999983
No 30
>PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
Probab=24.30 E-value=64 Score=23.88 Aligned_cols=52 Identities=15% Similarity=-0.011 Sum_probs=32.6
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
+.++-+++||+|+------..+-++..++.++.-.+ .+....|.|+-|++|-
T Consensus 107 ~~~~GgSTITQQlaKnl~l~~~rs~~RK~~E~~lA~-~lE~~~sK~~ILe~YL 158 (236)
T PRK00056 107 KRVRGASTISQQTAKNLFLWPGRSWVRKGLEAPLTL-MIELVWSKRRILEVYL 158 (236)
T ss_pred CCCCCcCcHHHHHHHHHcccCCCcHhHHHHHHHHHH-HHHHhCCHHHHHHHHH
Confidence 346789999988843222223445666665554332 2344689999999983
No 31
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.23 E-value=26 Score=27.81 Aligned_cols=12 Identities=58% Similarity=0.672 Sum_probs=7.1
Q ss_pred HHHhhhcccccC
Q 043909 58 ILYGLYKQATVG 69 (74)
Q Consensus 58 ~LYglYKQAT~G 69 (74)
++---|||+.+|
T Consensus 291 e~~e~y~q~~~g 302 (384)
T KOG0972|consen 291 ELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHhccc
Confidence 444456777666
No 32
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase. This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam model pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan).
Probab=23.84 E-value=74 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=32.4
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
+.++-+++||+|+------..+-++..++.++.-.+ .+....|.|+-|++|-
T Consensus 102 ~~~~GgSTITQQlaKnl~l~~~rs~~RK~~E~~lA~-~lE~~~sK~~ILe~YL 153 (224)
T TIGR02070 102 KVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATW-MLETWWSKQRILEVYL 153 (224)
T ss_pred CCCCCcchHHHHHHHHHccCCCCcHhHHHHHHHHHH-HHHHhcCHHHHHHHHh
Confidence 457889999988843222223345666665544333 2344689999999983
No 33
>PRK11636 mrcA penicillin-binding protein 1a; Provisional
Probab=23.10 E-value=1.2e+02 Score=26.36 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=34.5
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
+.++-+++||+|+--.--.+.+-++..++.++.-.++ +-..+|.|+-|++|=
T Consensus 113 ~~~qGgSTITQQlaKn~~l~~ert~~RKikE~~lA~~-lE~~~SKdeILe~YL 164 (850)
T PRK11636 113 HASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIR-IEQLLTKDEILELYL 164 (850)
T ss_pred CCCCCcCcHHHHHHHHhccCCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHH
Confidence 3457789999888332222234567888877655443 345689999999993
No 34
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=21.75 E-value=1.5e+02 Score=16.14 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=18.1
Q ss_pred HHH-HHHHHHHhcCCCCCCHHHHHHHHhhh
Q 043909 35 EEF-EEYAEKAKTLPESTTNENKLILYGLY 63 (74)
Q Consensus 35 e~F-~~A~~~vk~l~~~~s~e~kL~LYglY 63 (74)
.+| ..|.+..++.. ...-+.+.++|+++
T Consensus 8 ~eFr~laled~~~~~-~~gm~~LfRFwsy~ 36 (39)
T smart00684 8 EEFRQLCLEDRKSLG-RYELNCLYRFWSYG 36 (39)
T ss_pred HHHHHHHHHHHHHcC-ChhHHHHHHHHHhh
Confidence 456 56777776655 44566677777665
No 35
>PF15124 DUF4563: Domain of unknown function (DUF4563)
Probab=21.49 E-value=43 Score=24.24 Aligned_cols=14 Identities=43% Similarity=0.766 Sum_probs=11.4
Q ss_pred HHHHHHhhhccccc
Q 043909 55 NKLILYGLYKQATV 68 (74)
Q Consensus 55 ~kL~LYglYKQAT~ 68 (74)
..|.|||.||-.|.
T Consensus 159 sILLLYA~YKKCtf 172 (178)
T PF15124_consen 159 SILLLYATYKKCTF 172 (178)
T ss_pred HHHHHHHHHhhhhe
Confidence 46889999998765
No 36
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=2e+02 Score=19.76 Aligned_cols=48 Identities=35% Similarity=0.526 Sum_probs=32.5
Q ss_pred hHHhhhhhhhhhhhhccCCCCCCC--hH-HHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccc
Q 043909 9 RYVRSASHLNSQISEKNKRKGKMG--LQ-EEFEEYAEKAKTLPESTTNENKLILYGLYKQAT 67 (74)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~m~--l~-e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT 67 (74)
.+.++|..|.+|+++.+++.+... |+ +..+ .+++|+--.||-|-|-|+
T Consensus 59 eW~~Ya~~l~qql~~~g~~K~~~g~~ld~d~le-----------~l~deqi~QLyELm~ea~ 109 (125)
T KOG4100|consen 59 EWERYAVALSQQLSSAGKWKGEIGSDLDSDKLE-----------QLSDEQIGQLYELMKEAQ 109 (125)
T ss_pred HHHHHHHHHHHHhhhcCcccccccccCCHHHHH-----------HcCHHHHHHHHHHHHHHH
Confidence 456788899999999888887742 22 2211 356777777777766554
Done!