Query 043909
Match_columns 74
No_of_seqs 106 out of 688
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3epy_A Acyl-COA-binding domain 99.8 3.1E-19 1.1E-23 113.2 4.0 44 31-74 2-45 (89)
2 1st7_A ACBP, acyl-COA-binding 99.7 4.4E-18 1.5E-22 106.8 4.1 42 33-74 1-42 (86)
3 1hbk_A ACBP, acyl-COA binding 99.7 1.1E-17 3.7E-22 105.6 4.4 42 33-74 2-45 (89)
4 3fp5_A Acyl-COA binding protei 99.7 1.3E-17 4.4E-22 108.9 4.5 44 31-74 2-49 (106)
5 2cb8_A Acyl-COA-binding protei 99.7 2.8E-17 9.7E-22 103.6 4.4 42 33-74 2-43 (87)
6 2cop_A Acyl-coenzyme A binding 99.7 3.4E-17 1.2E-21 107.1 4.4 43 32-74 7-49 (109)
7 2cqu_A Peroxisomal D3,D2-enoyl 99.7 7.5E-17 2.5E-21 106.8 5.3 43 32-74 15-57 (116)
8 2wh5_A Acyl-COA-binding domain 99.6 1.7E-16 5.8E-21 103.5 3.3 43 32-74 7-53 (106)
9 2lbb_A Acyl COA binding protei 99.6 1E-16 3.6E-21 103.2 1.3 41 34-74 11-52 (96)
10 3flv_A Acyl-COA-binding domain 99.6 1.8E-16 6.1E-21 105.6 2.2 43 32-74 23-69 (119)
11 1mix_A Talin; focal adhesion, 90.3 0.29 1E-05 32.2 3.6 42 32-73 17-58 (206)
12 1vp7_A Exodeoxyribonuclease VI 34.0 39 0.0013 21.2 3.1 33 29-61 28-61 (100)
13 2z5k_B Nuclear RNA export fact 31.6 12 0.0004 18.9 0.3 8 1-8 19-26 (30)
14 3hzs_A Monofunctional glycosyl 30.5 21 0.00071 24.9 1.5 50 11-61 69-118 (209)
15 2oqo_A Penicillin-binding prot 25.8 41 0.0014 23.1 2.3 52 8-60 66-117 (200)
16 3vmt_A Monofunctional glycosyl 23.3 30 0.001 25.1 1.3 50 11-61 122-171 (263)
17 4f7g_A Talin-1; alpha-helix bu 22.4 1.1E+02 0.0037 20.1 3.9 43 31-73 27-69 (222)
18 1eex_G Propanediol dehydratase 22.3 82 0.0028 21.8 3.3 27 31-62 99-125 (173)
19 2ynq_A ESSB; membrane protein, 21.1 34 0.0012 23.3 1.1 27 34-65 86-112 (161)
20 1ef1_A Moesin; membrane, FERM 20.9 1E+02 0.0036 20.9 3.6 38 36-73 99-136 (294)
21 1iwp_G Glycerol dehydratase ga 20.2 62 0.0021 21.7 2.2 28 30-62 66-93 (141)
No 1
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=99.76 E-value=3.1e-19 Score=113.20 Aligned_cols=44 Identities=41% Similarity=0.643 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
|+|+++|++|++.|+.++..|++|++|+|||||||||+|||++|
T Consensus 2 m~L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~ 45 (89)
T 3epy_A 2 MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIA 45 (89)
T ss_dssp CHHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred CcHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCC
Confidence 78999999999999999999999999999999999999999975
No 2
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.4e-18 Score=106.84 Aligned_cols=42 Identities=40% Similarity=0.619 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
|+++|++|+++|+.++..|++|++|+|||||||||+|||++|
T Consensus 1 l~~~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~ 42 (86)
T 1st7_A 1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKE 42 (86)
T ss_dssp CHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCC
T ss_pred CHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCC
Confidence 578999999999999999999999999999999999999975
No 3
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=99.70 E-value=1.1e-17 Score=105.62 Aligned_cols=42 Identities=40% Similarity=0.544 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCC--CCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 33 LQEEFEEYAEKAKTLP--ESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~--~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
|+++|++|+++|+.++ ..|++|++|+|||||||||+|||+++
T Consensus 2 l~~~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~ 45 (89)
T 1hbk_A 2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK 45 (89)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred hHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCC
Confidence 6899999999999999 89999999999999999999999974
No 4
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=99.69 E-value=1.3e-17 Score=108.93 Aligned_cols=44 Identities=36% Similarity=0.580 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhcCCC----CCCHHHHHHHHhhhcccccCCCCCC
Q 043909 31 MGLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~~----~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
|+++++|++|+++|+.++. .|++|++|+|||||||||+|||+++
T Consensus 2 ~~~~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~ 49 (106)
T 3fp5_A 2 HMSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNIS 49 (106)
T ss_dssp CCCHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred CchHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 7899999999999999985 7999999999999999999999975
No 5
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=99.68 E-value=2.8e-17 Score=103.56 Aligned_cols=42 Identities=48% Similarity=0.727 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
.+++|++|++.|+.++..|++|++|+|||||||||+|||+++
T Consensus 2 ~~~~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~ 43 (87)
T 2cb8_A 2 SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTE 43 (87)
T ss_dssp CHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred cHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCC
Confidence 378999999999999999999999999999999999999974
No 6
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-17 Score=107.06 Aligned_cols=43 Identities=42% Similarity=0.565 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
+|+++|++|+++|+.++..+++|++|+|||||||||+|||+++
T Consensus 7 ~l~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~ 49 (109)
T 2cop_A 7 GLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTP 49 (109)
T ss_dssp CSHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCC
Confidence 4799999999999999999999999999999999999999974
No 7
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-17 Score=106.79 Aligned_cols=43 Identities=47% Similarity=0.648 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
.++++|++|++.|+.++..|++|++|+|||||||||+|||++|
T Consensus 15 ~~~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~ 57 (116)
T 2cqu_A 15 ASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMP 57 (116)
T ss_dssp CCHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCSC
T ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 4799999999999999999999999999999999999999964
No 8
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=103.54 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHhcCCC----CCCHHHHHHHHhhhcccccCCCCCC
Q 043909 32 GLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~----~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
.|+++|++|+++|+.++. .|++|++|+|||||||||+|||+++
T Consensus 7 ~l~~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~ 53 (106)
T 2wh5_A 7 DCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVP 53 (106)
T ss_dssp --CHHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSC
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCC
Confidence 367999999999999987 7999999999999999999999864
No 9
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=99.60 E-value=1e-16 Score=103.16 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCC-CCCCHHHHHHHHhhhcccccCCCCCC
Q 043909 34 QEEFEEYAEKAKTLP-ESTTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 34 ~e~F~~A~~~vk~l~-~~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
.++|++|++.|++++ ..|++|++|+|||||||||+|||+++
T Consensus 11 ~~~F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~ 52 (96)
T 2lbb_A 11 ADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKP 52 (96)
T ss_dssp SSTHHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 578999999999999 99999999999999999999999974
No 10
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=105.64 Aligned_cols=43 Identities=40% Similarity=0.566 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHhcCCC----CCCHHHHHHHHhhhcccccCCCCCC
Q 043909 32 GLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS 74 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~----~~s~e~kL~LYglYKQAT~Gdcn~p 74 (74)
.|+++|++|+++|+.++. .|++|++|+|||||||||+|||++|
T Consensus 23 dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~ 69 (119)
T 3flv_A 23 MHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLS 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred HHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 378999999999999875 6899999999999999999999975
No 11
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=90.25 E-value=0.29 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73 (74)
Q Consensus 32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~ 73 (74)
.+.--|..+...|-...-..+.|+.+.|.||..||..||++.
T Consensus 17 ~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~ 58 (206)
T 1mix_A 17 QLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNE 58 (206)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred HHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCc
Confidence 345567888888887777889999999999999999999863
No 12
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=34.02 E-value=39 Score=21.21 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHh
Q 043909 29 GKMGLQEEFEEYAEKAKTLP-ESTTNENKLILYG 61 (74)
Q Consensus 29 ~~m~l~e~F~~A~~~vk~l~-~~~s~e~kL~LYg 61 (74)
.+++.++.+.+.-++|..+- +.++-|+-|.+|-
T Consensus 28 ~~~sFEeal~eLEeIV~~LE~gel~LEesl~lye 61 (100)
T 1vp7_A 28 LPQDFETALAELESLVSAMENGTLPLEQSLSAYR 61 (100)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45788999999999999884 5799999999884
No 13
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=31.56 E-value=12 Score=18.92 Aligned_cols=8 Identities=38% Similarity=0.941 Sum_probs=5.9
Q ss_pred CCCcchhh
Q 043909 1 RHTPYQSK 8 (74)
Q Consensus 1 ~~~~~~~~ 8 (74)
|||||-..
T Consensus 19 RytPY~~~ 26 (30)
T 2z5k_B 19 RYNPYTTR 26 (30)
T ss_pred cccCcccc
Confidence 78999653
No 14
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=30.48 E-value=21 Score=24.94 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=33.1
Q ss_pred HhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 11 VRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
++-+++||+|+------..+-++..++.++.-.++ +-...|.++-|++|=
T Consensus 69 ~~GgSTITQQlaKn~~l~~~rt~~RK~~E~~lA~~-lE~~~sK~eILe~YL 118 (209)
T 3hzs_A 69 VQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHR-VEKQYNKNEILSFYL 118 (209)
T ss_dssp CCCSCCHHHHHHHHHBCCCCCCHHHHHHHHHHHHH-HHHHSCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHhccCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHH
Confidence 56789999887433222334567788766655443 344589999999983
No 15
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A
Probab=25.79 E-value=41 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=32.9
Q ss_pred hhHHhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 043909 8 KRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILY 60 (74)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LY 60 (74)
.+-++-+++||+|+------..+-++..++.+++-.++ +-...|.|+-|++|
T Consensus 66 g~~~~GgSTITqQlaKn~~l~~~rt~~RK~~E~~~A~~-lE~~~sK~eILe~Y 117 (200)
T 2oqo_A 66 GRIVQGGSTITQQLAKNLFLTRERTLERKIKEALLAIK-IERTFDKKKIMELY 117 (200)
T ss_dssp ---CCCCCCHHHHHHHTTSSSCCCCHHHHHHHHHHHHH-HHHHSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHhccCccccHhHHHHHHHHHHH-HHHHcCHHHHHHHH
Confidence 34567789999888433222334567888766655443 23358999999999
No 16
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=23.32 E-value=30 Score=25.09 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=31.0
Q ss_pred HhhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Q 043909 11 VRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYG 61 (74)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYg 61 (74)
++-+++||+|+------..+-++..++.++.-.++ +-...|.|+-|++|-
T Consensus 122 ~~GgSTITQQlaKn~~l~~~rt~~RK~~E~~lA~~-lE~~~sK~eILe~YL 171 (263)
T 3vmt_A 122 VQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHR-VEKQYNKNEILSFYL 171 (263)
T ss_dssp --CCCCHHHHHHHHHHCSSCCCSHHHHHHHHHHHH-HHHHSCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HHHHcCHHHHHHHHH
Confidence 67789999887432212234467777766654443 334589999999993
No 17
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=22.39 E-value=1.1e+02 Score=20.13 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~ 73 (74)
..+.--|..+...+-...-..+.|+-+.|=||-=||..||.+.
T Consensus 27 ~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~ 69 (222)
T 4f7g_A 27 VQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNE 69 (222)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred HHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCCc
Confidence 4455667777777776666788999999999999999999753
No 18
>1eex_G Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: a.23.2.1 PDB: 1dio_G* 1egm_G* 1egv_G* 1iwb_G* 1uc4_G* 1uc5_G* 3auj_G*
Probab=22.34 E-value=82 Score=21.78 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Q 043909 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGL 62 (74)
Q Consensus 31 m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYgl 62 (74)
-.+...|..|++.+ ..++|..|++|-.
T Consensus 99 ~~~a~NfrRAAELt-----~VPD~riLeiYna 125 (173)
T 1eex_G 99 DRLAMNFERAAELT-----AVPDDRILEIYNA 125 (173)
T ss_dssp HHHHHHHHHHHHHT-----TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----cCCHHHHHHHHHh
Confidence 34678899999977 3688899999864
No 19
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=21.10 E-value=34 Score=23.30 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcc
Q 043909 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQ 65 (74)
Q Consensus 34 ~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQ 65 (74)
.-.|++|..+.+.+.+ ..|.||||.|+
T Consensus 86 Rg~~~eAlDiA~~L~D-----~qLilyAl~K~ 112 (161)
T 2ynq_A 86 RSQSEEALELARTIED-----RDLIVYALLKY 112 (161)
T ss_dssp HTCHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCc-----HHHHHHHHHHH
Confidence 3578889988887654 47889999775
No 20
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=20.94 E-value=1e+02 Score=20.87 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909 36 EFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73 (74)
Q Consensus 36 ~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~ 73 (74)
-|..+...|-...-..+.|+.+.|=||--||..||.+.
T Consensus 99 ~y~Q~~~dil~g~~~~~~e~a~~Laal~~q~~~Gd~~~ 136 (294)
T 1ef1_A 99 FFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNK 136 (294)
T ss_dssp HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCCCc
Confidence 45666666666555778899999999999999999763
No 21
>1iwp_G Glycerol dehydratase gamma subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: a.23.2.1 PDB: 1mmf_G*
Probab=20.20 E-value=62 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Q 043909 30 KMGLQEEFEEYAEKAKTLPESTTNENKLILYGL 62 (74)
Q Consensus 30 ~m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYgl 62 (74)
.-.+...|..|++.+ ..++|..|++|-.
T Consensus 66 r~~~a~NfrRAAELt-----~VPD~riLeiYna 93 (141)
T 1iwp_G 66 RHAVARNFRRAAELI-----AIPDERILAIYNA 93 (141)
T ss_dssp CHHHHHHHHHHHTTT-----TSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-----cCCHHHHHHHHHh
Confidence 334678888888866 4688899999864
Done!