BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043910
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP----- 193
+ L LP +E + L + LP+SI L+RL L +R C L LP
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 194 -------KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLS 246
+GL L+SL+ L GI LP ++ L +L+ +R + + + HL
Sbjct: 173 TDASGEHQGLVNLQSLR---LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 247 RLHSFCLSYCERLQSLPKL 265
+L L C L++ P +
Sbjct: 230 KLEELDLRGCTALRNYPPI 248
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 37/190 (19%)
Query: 90 SNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI 149
+ + +L D Q L + +T ARN + P + I SLN+L L++ C +L LP +
Sbjct: 114 AGLXELPDTXQQFAGL-ETLTLARNPLRALP--ASIASLNRLRELSIRACPELTELPEPL 170
Query: 150 LSAG---------NMEEMILNGTAIEELPSSIECLS-----------------------R 177
S N++ + L T I LP+SI L +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG-ITQLPENLGQLFSLEEFCLRK-TKF 235
L L LR C L++ P LK LIL C + LP ++ +L LE+ LR
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 236 EKIPTNVIHL 245
++P+ + L
Sbjct: 291 SRLPSLIAQL 300
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 134 LNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP 193
L+LS Q+ + A I + + LNG ++ ELP+ I+ LS L L L RL SLP
Sbjct: 229 LDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Query: 194 KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237
L LK+ +T LP G L +L+ + EK
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 131 LTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLK 190
LT L L+G S L LPAEI + N+ + L+ + LP+ + +L + D +
Sbjct: 249 LTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVT 306
Query: 191 SLPKGLCKLKSLKFLILNG 209
+LP L +L+FL + G
Sbjct: 307 TLPWEFGNLCNLQFLGVEG 325
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 24/205 (11%)
Query: 141 QLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCK- 198
+L +P+ I + +++ L + LPS + L++L L L D K L++LP G+ K
Sbjct: 27 KLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKE 83
Query: 199 LKSLKFLILNGCGITQLPENL-GQLFSLEEFCLRKTKFEKIPTNVIH-LSRLHSFCLSYC 256
LK+L+ L + + LP + QL +L E L + + + +P V L++L L Y
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 257 ERLQSLPKLPCNLKELDADHCAALESL----SDLFSISYDYYIRCFELSTNYKLDRNELR 312
E LQSLPK D +L+ L + L + + + EL T KLD N+L+
Sbjct: 144 E-LQSLPKGV-------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT-LKLDNNQLK 194
Query: 313 SILEDALQKIQDMASTTRWKQLYEN 337
+ E A ++ + + QL EN
Sbjct: 195 RVPEGAFDSLEKL----KMLQLQEN 215
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 127 SLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSIECLSRLLHLGLRD 185
SL +LT+L+L G +QL LP+ + +++E+ + + ELP IE L+ L HL L D
Sbjct: 86 SLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-D 143
Query: 186 CKRLKSLPKG-LCKLKSLKFLILNG 209
+LKS+P G +L SL L G
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTA 164
+QI+ N +TK P SL L L L G +QL LP + S + + L
Sbjct: 42 AQILYLHDNQITKL-EPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 165 IEELPSSIECLSRLLHLG--LRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218
+ LPS++ RL+HL C +L LP+G+ +L L L L+ + +P
Sbjct: 100 LTVLPSAV--FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 140 SQLKRL-PAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKGLC 197
+Q+ +L P S N++E+ L + LP + + L++L L L +L LP +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVF 108
Query: 198 -KLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY 255
+L LK L + +T+LP + +L L L + + + IP RL S +Y
Sbjct: 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAY 165
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 155 MEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ 214
++++I N + I+ + I+ L + +L L K L + L +L +L +LIL G +
Sbjct: 43 IDQIIANNSDIKSV-QGIQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGNQLQS 99
Query: 215 LPENL-GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLP----CNL 269
LP + +L +L+E L + + + +P V ++ Y +LQSLPK NL
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 270 KELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQKIQDMA 326
LD D+ L L +D + +LS L+ N+L+S+ + ++ +
Sbjct: 160 TRLDLDN----NQLQSLPEGVFDKLTQLKQLS----LNDNQLKSVPDGVFDRLTSLT 208
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 62/322 (19%)
Query: 58 PEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVT 117
P + YL L+ LP + + + L +++V ++++++L D + I A N +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL----EFIAAGNNQLE 186
Query: 118 KTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSR 177
+ P +++L LT + + + LK+LP LS +E ++ +EELP ++ L
Sbjct: 187 ELPE---LQNLPFLTAI-YADNNSLKKLPDLPLS---LESIVAGNNILEELP-ELQNLPF 238
Query: 178 LLHLGLRD--CKRLKSLPKGLCKL--------------KSLKFLILNG---CGITQLPEN 218
L + + K L LP L L +SL FL ++ G+++LP N
Sbjct: 239 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298
Query: 219 LGQLF--------------SLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK 264
L L SLEE + K ++P L RL ++ L +P+
Sbjct: 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL----IASFNHLAEVPE 354
Query: 265 LPCNLKELDADHCA------ALESLSDLFSISYDYYIRCFELSTNYK---LDRNELRSIL 315
LP NLK+L ++ ES+ DL S + EL N K ++ N LR
Sbjct: 355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNS--HLAEVPELPQNLKQLHVETNPLREF- 411
Query: 316 EDALQKIQDM-ASTTRWKQLYE 336
D + ++D+ ++ R YE
Sbjct: 412 PDIPESVEDLRMNSERVVDPYE 433
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 163 TAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQL 222
T++ LP ++ LS + L +LP LCKL + + + LP L
Sbjct: 134 TSLPVLPPGLQELS----VSDNQLASLPALPSELCKLWAYNNQL---TSLPMLPSGL--- 183
Query: 223 FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL 272
+E + + +PT L +L + Y RL SLP LP LKEL
Sbjct: 184 ---QELSVSDNQLASLPTLPSELYKLWA----YNNRLTSLPALPSGLKEL 226
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 170 SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEF 228
S+ C +R+ L L L LP G+ + SLK L+LN QL + N SL +
Sbjct: 271 STFRCFTRVQELDLT-AAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDL 329
Query: 229 CLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALE 281
+ K K+ L + CL E+L++L KL + +++A C L+
Sbjct: 330 YI-KGNMRKL--------DLGTRCL---EKLENLQKLDLSHSDIEASDCCNLQ 370
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 7/218 (3%)
Query: 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKL 82
DT KMR L+ L + +GE ++N+ + L + + LP++ K
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL--TLDLSSNNFSGPILPNLCQNPKN 394
Query: 83 VLLEVPHSNIQQLGDGGQHHCKLSQIITA--ARNFVTKTPNPSFIRSLNKLTILNLSGCS 140
L E+ N G S++++ + N+++ T PS + SL+KL L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNM 453
Query: 141 QLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKL 199
+P E++ +E +IL+ + E+PS + + L + L + + +PK + +L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 200 KSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE 236
++L L L+ + +P LG SL L F
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 7/218 (3%)
Query: 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKL 82
DT KMR L+ L + +GE ++N+ + L + + LP++ K
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL--TLDLSSNNFSGPILPNLCQNPKN 391
Query: 83 VLLEVPHSNIQQLGDGGQHHCKLSQIITA--ARNFVTKTPNPSFIRSLNKLTILNLSGCS 140
L E+ N G S++++ + N+++ T PS + SL+KL L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNM 450
Query: 141 QLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKL 199
+P E++ +E +IL+ + E+PS + + L + L + + +PK + +L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 200 KSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE 236
++L L L+ + +P LG SL L F
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 197 CKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRK-TKFEKIPTNVIHLSRLHSFCLSY 255
C + L LN ++ LP+NL ++ E ++P ++ +L
Sbjct: 56 CLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLD--------A 107
Query: 256 CE-RLQSLPKLPCNLKELDADH 276
C+ RL +LP+LP +LK LD D+
Sbjct: 108 CDNRLSTLPELPASLKHLDVDN 129
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAI 165
P R LN L +LN+SG +QL L + S GN+E +IL+ +
Sbjct: 289 PYAFRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPL 332
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 24/146 (16%)
Query: 120 PNPSFIRSLN----KLTILNLSGCSQLKRLPAEILSAGNMEE------MILNGTAIEELP 169
P+PS LN T GCS LKRL IL ++ M N +++E L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409
Query: 170 SSIECLSRLLHLGLRDCKRLKSL------------PKGLCKLKSLKFLILNGCGITQLPE 217
S+ L+ H R C +S+ C +K L L+ I +P+
Sbjct: 410 VSLNSLNS--HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK 467
Query: 218 NLGQLFSLEEFCLRKTKFEKIPTNVI 243
++ L +L+E + + + +P V
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVF 493
>pdb|2P22|A Chain A, Structure Of The Yeast Escrt-i Heterotetramer Core
Length = 174
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 108 IITAARNFVTKTPNPSFI--RSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAI 165
++TA R V + + S + +N + + G +QL L A+ +
Sbjct: 81 VLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYA-------------- 126
Query: 166 EELPSSIECLSRLLHLG 182
L +IECLSR+LH G
Sbjct: 127 --LTDTIECLSRMLHRG 141
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 154 NMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT 213
NM IL T LP I+ L LH ++KS+PK + KL++L+ L + +
Sbjct: 405 NMSSNILTDTIFRCLPPRIKVLD--LH-----SNKIKSIPKQVVKLEALQELNVASNQLK 457
Query: 214 QLPENL-GQLFSLEEFCLRKTKFEKIPTNVIHLSR 247
+P+ + +L SL++ L ++ + +LSR
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 492
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 4 EIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENK---CK----------VS 50
E+E + L M++++E+ ++ T+M+ L+ L +S++ + K C S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 51 NI-QDPVF----PEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDG 98
NI D +F P I+ L H +KS+P + L L V + ++ + DG
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 241 NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAAL--ESLSDLFSISYDYYIRC- 297
N +S LHSFCL ++ L L + D + E L +LF Y +
Sbjct: 102 NRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAF 161
Query: 298 FELSTNYKLDRNEL------RSILEDALQKIQDMASTTRWKQLYENLEKISYPERRGYVY 351
FEL Y DR++L + + E + A + LY+ EK + E Y Y
Sbjct: 162 FELVDRYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPFYQY 221
Query: 352 V 352
V
Sbjct: 222 V 222
>pdb|2B5D|X Chain X, Crystal Structure Of The Novel Alpha-Amylase Amyc From
Thermotoga Maritima
Length = 528
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 21 YSDTFTKMRKLRFLKFYNSSING---ENKCKVSNIQDPVFPEIRY 62
Y++ TK+ RFL Y+ ++G E + D +FPEI +
Sbjct: 476 YAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAIFPEINF 520
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLS-QIITAARNFVTKTPNPSFIRS 127
+ HPA ++E+ + +++GDG L+ ++++ A +F+ + +P+ + S
Sbjct: 60 VQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVIS 112
>pdb|2F6D|A Chain A, Structure Of The Complex Of A Glucoamylase From
Saccharomycopsis Fibuligera With Acarbose
pdb|2FBA|A Chain A, Glucoamylase From Saccharomycopsis Fibuligera At Atomic
Resolution
pdb|1AYX|A Chain A, Crystal Structure Of Glucoamylase From Saccharomycopsis
Fibuligera At 1.7 Angstroms
Length = 492
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 11/51 (21%)
Query: 297 CFELSTNYKLDRNELRSILEDALQKIQDMASTTRWKQLYENLEKISYPERR 347
FE +NYK+DR +L + L+ K ++++ LY L+ I+YPE +
Sbjct: 4 SFEAYSNYKVDRTDLETFLD----KQKEVS-------LYYLLQNIAYPEGQ 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,200,606
Number of Sequences: 62578
Number of extensions: 402488
Number of successful extensions: 891
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 44
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)