Query 043910
Match_columns 353
No_of_seqs 225 out of 3472
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.5E-26 3.2E-31 238.4 24.5 209 1-216 530-741 (1153)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-25 3.1E-30 230.0 19.4 289 6-303 70-366 (968)
3 PLN00113 leucine-rich repeat r 99.9 8.3E-24 1.8E-28 217.1 18.8 228 21-256 156-390 (968)
4 KOG4194 Membrane glycoprotein 99.9 7.7E-25 1.7E-29 197.7 5.2 301 8-319 128-465 (873)
5 PLN03210 Resistant to P. syrin 99.9 6.5E-21 1.4E-25 196.8 21.0 266 28-310 610-947 (1153)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-24 3E-29 197.7 -5.8 275 18-307 93-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 5E-22 1.1E-26 179.7 5.8 283 8-303 81-402 (873)
8 KOG0444 Cytoskeletal regulator 99.8 1.8E-22 4E-27 184.0 -4.0 272 22-307 48-353 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 5E-22 1.1E-26 172.3 -3.4 280 8-306 117-541 (565)
10 PRK15387 E3 ubiquitin-protein 99.7 2.7E-17 5.8E-22 159.7 16.0 256 10-310 206-461 (788)
11 KOG0472 Leucine-rich repeat pr 99.7 2E-20 4.3E-25 162.5 -7.4 259 28-304 44-308 (565)
12 PRK15370 E3 ubiquitin-protein 99.7 3.7E-16 8.1E-21 152.5 12.2 246 29-304 178-426 (754)
13 PRK15370 E3 ubiquitin-protein 99.7 6.5E-16 1.4E-20 150.9 12.6 238 9-278 182-426 (754)
14 KOG0618 Serine/threonine phosp 99.7 5.5E-18 1.2E-22 161.0 -2.2 213 60-278 243-487 (1081)
15 KOG0618 Serine/threonine phosp 99.6 9.9E-18 2.1E-22 159.4 -1.3 266 26-307 196-490 (1081)
16 PRK15387 E3 ubiquitin-protein 99.6 2.2E-15 4.8E-20 146.5 14.8 232 29-303 201-432 (788)
17 KOG0617 Ras suppressor protein 99.6 5E-18 1.1E-22 131.5 -5.1 161 100-265 30-191 (264)
18 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.4E-22 129.6 -3.3 168 72-244 25-194 (264)
19 KOG4237 Extracellular matrix p 99.5 4E-16 8.6E-21 135.7 -5.1 285 7-322 69-375 (498)
20 cd00116 LRR_RI Leucine-rich re 99.5 1.4E-14 3E-19 130.3 1.5 48 22-71 16-64 (319)
21 cd00116 LRR_RI Leucine-rich re 99.4 4.9E-14 1.1E-18 126.8 4.2 34 60-93 25-64 (319)
22 KOG4237 Extracellular matrix p 99.3 1.6E-13 3.6E-18 119.6 -3.8 197 9-211 95-357 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.2 9.5E-12 2.1E-16 123.8 6.4 232 73-309 516-786 (889)
24 COG4886 Leucine-rich repeat (L 99.2 3.6E-11 7.8E-16 111.5 5.5 191 63-259 98-290 (394)
25 KOG0532 Leucine-rich repeat (L 99.1 1.6E-12 3.4E-17 118.5 -4.5 171 79-256 74-244 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 7.5E-11 1.6E-15 95.0 4.6 112 70-186 9-123 (175)
27 KOG1259 Nischarin, modulator o 99.1 3.3E-11 7.2E-16 102.0 2.6 192 60-257 216-410 (490)
28 KOG3207 Beta-tubulin folding c 99.1 5.5E-12 1.2E-16 111.5 -2.2 195 60-255 123-335 (505)
29 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.3E-15 107.3 6.0 176 60-241 118-295 (394)
30 KOG1259 Nischarin, modulator o 99.0 7.5E-11 1.6E-15 99.8 1.6 130 80-239 284-415 (490)
31 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6.1E-15 91.7 4.8 124 127-254 17-148 (175)
32 KOG3207 Beta-tubulin folding c 99.0 2.3E-10 4.9E-15 101.5 2.0 204 27-236 119-339 (505)
33 KOG0532 Leucine-rich repeat (L 98.9 4.6E-11 1E-15 109.1 -3.3 190 60-256 77-270 (722)
34 KOG4341 F-box protein containi 98.9 6.2E-11 1.3E-15 104.5 -4.0 238 78-316 188-449 (483)
35 KOG1909 Ran GTPase-activating 98.8 2.4E-10 5.2E-15 98.6 -3.5 233 23-257 24-309 (382)
36 KOG4658 Apoptotic ATPase [Sign 98.8 8.5E-09 1.8E-13 103.1 5.4 123 60-185 525-651 (889)
37 PLN03150 hypothetical protein; 98.7 2.8E-08 6.2E-13 96.9 8.0 87 178-264 420-508 (623)
38 KOG1909 Ran GTPase-activating 98.7 5.3E-09 1.1E-13 90.5 2.3 178 124-303 87-308 (382)
39 PRK15386 type III secretion pr 98.7 9.7E-08 2.1E-12 86.4 10.0 161 126-310 49-217 (426)
40 KOG4341 F-box protein containi 98.7 3.3E-10 7.2E-15 99.9 -7.0 214 101-314 188-422 (483)
41 PLN03150 hypothetical protein; 98.6 7E-08 1.5E-12 94.2 8.1 110 154-263 419-532 (623)
42 KOG2120 SCF ubiquitin ligase, 98.5 9.5E-10 2.1E-14 93.1 -6.8 173 82-256 187-373 (419)
43 KOG0531 Protein phosphatase 1, 98.5 1E-08 2.2E-13 95.6 -2.3 168 60-236 97-268 (414)
44 PF13855 LRR_8: Leucine rich r 98.5 1.8E-07 3.9E-12 61.9 4.3 31 155-185 3-34 (61)
45 KOG0531 Protein phosphatase 1, 98.4 3.1E-08 6.8E-13 92.3 -1.2 188 60-256 74-265 (414)
46 PF13855 LRR_8: Leucine rich r 98.4 4E-07 8.6E-12 60.2 4.0 58 176-234 1-60 (61)
47 PRK15386 type III secretion pr 98.4 3.7E-06 8.1E-11 76.2 10.8 132 79-233 51-187 (426)
48 KOG2120 SCF ubiquitin ligase, 98.3 8.9E-09 1.9E-13 87.4 -6.5 175 129-304 185-374 (419)
49 KOG1859 Leucine-rich repeat pr 98.2 3.5E-08 7.5E-13 93.1 -5.7 84 148-235 182-266 (1096)
50 KOG1859 Leucine-rich repeat pr 98.2 7.6E-08 1.7E-12 90.9 -3.8 101 153-256 164-264 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.1 4.2E-06 9E-11 50.9 4.0 39 201-239 2-40 (44)
52 KOG2982 Uncharacterized conser 98.1 2.9E-07 6.2E-12 78.4 -1.9 200 62-263 49-266 (418)
53 KOG4579 Leucine-rich repeat (L 97.9 7.6E-07 1.7E-11 67.2 -2.4 89 151-240 51-140 (177)
54 KOG3665 ZYG-1-like serine/thre 97.8 8.2E-06 1.8E-10 80.0 2.3 150 102-253 121-282 (699)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6.1E-10 47.3 3.5 31 155-185 3-33 (44)
56 KOG4579 Leucine-rich repeat (L 97.8 1.7E-06 3.6E-11 65.5 -2.3 102 154-256 28-133 (177)
57 KOG1947 Leucine rich repeat pr 97.7 6.6E-06 1.4E-10 78.3 -0.3 110 102-211 187-306 (482)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 4E-10 77.6 2.2 126 129-256 122-260 (699)
59 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 59.3 5.3 79 60-139 44-123 (233)
60 COG5238 RNA1 Ran GTPase-activa 97.6 6.2E-05 1.3E-09 63.7 3.8 132 124-256 87-252 (388)
61 KOG1644 U2-associated snRNP A' 97.4 0.00034 7.4E-09 56.7 5.8 80 152-232 63-149 (233)
62 KOG1947 Leucine rich repeat pr 97.3 3.5E-05 7.5E-10 73.3 -1.3 180 126-306 185-389 (482)
63 KOG2982 Uncharacterized conser 97.2 0.00014 3.1E-09 62.3 1.7 204 81-287 46-269 (418)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00069 1.5E-08 57.1 2.9 79 174-253 63-150 (260)
65 COG5238 RNA1 Ran GTPase-activa 96.8 0.00093 2E-08 56.8 2.9 49 23-73 86-135 (388)
66 KOG2123 Uncharacterized conser 96.6 0.00012 2.6E-09 62.2 -3.5 98 152-252 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3.1E-08 55.3 2.2 61 127-187 63-127 (260)
68 PF13306 LRR_5: Leucine rich r 96.5 0.016 3.4E-07 44.3 7.6 81 124-209 7-90 (129)
69 KOG2123 Uncharacterized conser 96.4 0.00022 4.7E-09 60.7 -3.7 81 104-190 20-102 (388)
70 PF13306 LRR_5: Leucine rich r 95.9 0.038 8.3E-07 42.1 7.2 19 20-38 3-21 (129)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0067 1.5E-07 30.6 1.1 17 155-171 2-18 (22)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.014 3E-07 29.4 1.2 14 203-216 3-16 (22)
73 KOG3864 Uncharacterized conser 94.6 0.011 2.5E-07 48.1 0.4 83 223-306 101-189 (221)
74 PF13504 LRR_7: Leucine rich r 94.0 0.039 8.5E-07 25.8 1.4 14 154-167 2-15 (17)
75 smart00367 LRR_CC Leucine-rich 92.9 0.1 2.3E-06 27.4 2.1 24 292-315 1-24 (26)
76 smart00370 LRR Leucine-rich re 89.1 0.36 7.8E-06 25.2 1.9 18 223-240 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 89.1 0.36 7.8E-06 25.2 1.9 18 223-240 2-19 (26)
78 KOG0473 Leucine-rich repeat pr 86.7 0.015 3.2E-07 48.6 -6.5 88 124-213 37-124 (326)
79 KOG4308 LRR-containing protein 84.8 0.0088 1.9E-07 56.5 -10.0 177 60-236 89-303 (478)
80 KOG3864 Uncharacterized conser 84.8 0.71 1.5E-05 37.9 2.2 52 266-317 124-175 (221)
81 PF13516 LRR_6: Leucine Rich r 80.1 0.93 2E-05 23.0 0.9 14 223-236 2-15 (24)
82 KOG4308 LRR-containing protein 78.8 0.025 5.5E-07 53.4 -9.3 174 82-257 89-301 (478)
83 KOG0473 Leucine-rich repeat pr 78.3 0.036 7.7E-07 46.3 -7.3 96 149-245 38-134 (326)
84 smart00365 LRR_SD22 Leucine-ri 75.6 2.5 5.5E-05 22.2 1.7 16 80-95 2-17 (26)
85 smart00364 LRR_BAC Leucine-ric 72.1 2.7 5.9E-05 22.0 1.3 18 80-97 2-19 (26)
86 PF07725 LRR_3: Leucine Rich R 70.8 4.2 9E-05 19.9 1.7 19 81-99 1-19 (20)
87 smart00368 LRR_RI Leucine rich 54.7 9.8 0.00021 20.2 1.5 14 80-93 2-15 (28)
88 KOG3763 mRNA export factor TAP 45.0 9.5 0.00021 36.4 0.8 35 79-113 217-254 (585)
89 KOG3763 mRNA export factor TAP 33.0 22 0.00048 34.0 1.2 77 174-252 216-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=1.5e-26 Score=238.44 Aligned_cols=209 Identities=31% Similarity=0.543 Sum_probs=170.0
Q ss_pred CCCceEEEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc--cceEeecccCCCCCCCCCC
Q 043910 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE--IRYLFWHGYPLKSLPSITH 78 (353)
Q Consensus 1 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~l~~~~~ 78 (353)
|+..+++|.+|++..+...+..++|.+|++|+.|.+..+............+..+..++ |+.|+|.+++++.+|..+.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~ 609 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR 609 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence 67889999999999999999999999999999999987653322222244566666655 9999999999999999889
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+++|+.|+++++.++.++.+...+++|+.+++++++.++.++ .++.+++|++|++++|.....+|..+..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 999999999999999999988999999999999998776554 47788999999999999999999999999999999
Q ss_pred EccCc-cCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccC
Q 043910 159 ILNGT-AIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 159 ~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
++++| .++.+|..+ .+++|++|++++|..+..+|.. ..+|+.|++++|.+..+|
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP 741 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence 99997 566888755 6889999999988776665532 234455555555444333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.4e-25 Score=230.01 Aligned_cols=289 Identities=19% Similarity=0.233 Sum_probs=207.3
Q ss_pred EEEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceE
Q 043910 6 EGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVL 84 (353)
Q Consensus 6 ~~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~ 84 (353)
+...+|++++......+..|..+++|+.|++++|.+.+..+... +..+. |++|++++|.+....+...+++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-----~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----FTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH-----hccCCCCCEEECcCCccccccCccccCCCCE
Confidence 34556666665555557788999999999999999876554221 21233 8999999988764333456788999
Q ss_pred EEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 85 LEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 85 L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
|++++|.+.. ++..+..+++|+.|++++|...... +..+..+++|++|++++|...+.+|..+..+++|++|++++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 9999888864 5666777888999999887543222 346778888888888888777778888888888888888888
Q ss_pred cCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccch
Q 043910 164 AIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPT 240 (353)
Q Consensus 164 ~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~ 240 (353)
.++ .+|..+..+++|++|++++|...+.+|..++++++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|.
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 877 67777888888888888887666667777788888888888888776 56666777778888888888776 6666
Q ss_pred hHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 241 NVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 241 ~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
.+.++++|+.|++++|...+.+|. .+++|+.|++++|.--..++.... ..++|+.+++++|
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~Ls~n 366 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--KHNNLTVLDLSTN 366 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--CCCCCcEEECCCC
Confidence 777777888888877665555554 245677777777654434443221 2345556666555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=8.3e-24 Score=217.05 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=111.1
Q ss_pred CHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC-CCC-CCCCCCCceEEEccCCCccc-cC
Q 043910 21 YSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK-SLP-SITHPAKLVLLEVPHSNIQQ-LG 96 (353)
Q Consensus 21 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~-~l~-~~~~~~~L~~L~L~~~~i~~-l~ 96 (353)
.+..+..+++|++|++++|.+.+..+ ..+..+. |++|++++|.+. .+| .+..+++|+.|++++|.+.+ ++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIP------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCC------hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34445556666666666655544322 1222222 555555555543 233 23345555555555555542 34
Q ss_pred CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc-ccCccccCC
Q 043910 97 DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIECL 175 (353)
Q Consensus 97 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l 175 (353)
..+..+++|+.|++++|...... +..++.+++|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred hhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 44445555555555555321111 224455555555555555444445555555555555555555554 344444555
Q ss_pred CCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecc
Q 043910 176 SRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCL 253 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l 253 (353)
++|++|++++|.....+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 55555555554444444444455555555555555544 34444444555555555555443 33333333333444444
Q ss_pred ccc
Q 043910 254 SYC 256 (353)
Q Consensus 254 ~~~ 256 (353)
++|
T Consensus 388 ~~n 390 (968)
T PLN00113 388 FSN 390 (968)
T ss_pred cCC
Confidence 333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=7.7e-25 Score=197.71 Aligned_cols=301 Identities=19% Similarity=0.141 Sum_probs=178.2
Q ss_pred EEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC--CCCCCCCceEE
Q 043910 8 ICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP--SITHPAKLVLL 85 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L 85 (353)
-.+++..+.+.++..++++.++.|+.||++.|.++... .+..-...++++|+|++|.++.+. .+..+.+|..|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-----~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-----KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-----CCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 45567777788888999999999999999999886522 122212244999999999998776 34467799999
Q ss_pred EccCCCccccCCCCcC-CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc
Q 043910 86 EVPHSNIQQLGDGGQH-HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA 164 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 164 (353)
.|+.|+++.++...+. +++|+.|++..|. +.... .-.|..+++|+.|.+..|+...--...|..+.++++|+++.|+
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccc-eeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 9999999998876555 8999999988763 22111 2245566666666666644433333345555666666666665
Q ss_pred CcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-cc-----------------------
Q 043910 165 IEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NL----------------------- 219 (353)
Q Consensus 165 i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~----------------------- 219 (353)
+..+.. ++.++++|+.|++++|...+.-+++|..+++|+.|++++|+++.+++ .+
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 554322 34455555555555533322233455555555555555555554443 23
Q ss_pred -CCCCCCcEEEeeCCCCc-ccc---hhHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCcccccc
Q 043910 220 -GQLFSLEEFCLRKTKFE-KIP---TNVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSIS 290 (353)
Q Consensus 220 -~~l~~L~~L~l~~~~l~-~l~---~~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~ 290 (353)
..+++|++||+++|.+. .+. ..+.++++|++|++.| +.++.++. .+.+|++|++.++ .+.++-...+-+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~ 438 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEP 438 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeeccccccc
Confidence 33445555555555543 121 1233455555555555 33445442 3456666666664 244443333332
Q ss_pred ccccccEEEecCCccCchHHHHhHHHHHH
Q 043910 291 YDYYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 291 ~~~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
. .|+.|.+....-|++.....+..|..
T Consensus 439 m--~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 439 M--ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred c--hhhhhhhcccceEEeccHHHHHHHHH
Confidence 2 46666666666666666666666654
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.5e-21 Score=196.85 Aligned_cols=266 Identities=29% Similarity=0.392 Sum_probs=156.2
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccC-CCCCCCCCCCCCceEEEccCCC-ccccCCCCcCCCC
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYP-LKSLPSITHPAKLVLLEVPHSN-IQQLGDGGQHHCK 104 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~l~~~~~~~~L~~L~L~~~~-i~~l~~~~~~~~~ 104 (353)
.++|++|++.+|.+.. .+..+..+. |++++++++. ++.+|....+++|+.|++++|. +..++..+..+++
T Consensus 610 ~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred ccCCcEEECcCccccc-------cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCC
Confidence 3556666666655421 223333333 7777777654 5666766677777777777653 5556666677777
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc------------------
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE------------------ 166 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~------------------ 166 (353)
|+.|++++|+.++.++. ...+++|++|++++|..+..+|.. ..+|++|++++|.++
T Consensus 683 L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 683 LEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccc
Confidence 88888887776665532 125667777777776555444421 223444444444333
Q ss_pred ------------------------------------ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCc
Q 043910 167 ------------------------------------ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC 210 (353)
Q Consensus 167 ------------------------------------~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 210 (353)
.+|..++.+++|+.|++++|..++.+|..+ .+++|+.|++++|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 344444455555555555555455454432 4455555555554
Q ss_pred c-CCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCcc
Q 043910 211 G-ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDL 286 (353)
Q Consensus 211 ~-i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~ 286 (353)
. +..+|.. ..+|+.|++++|.+..+|..+..+++|+.|++++|+.++.+|.. ++.|+.+++++|..++.++..
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 2 2233321 24667777777777777877888888888888888888877753 356777788888888766542
Q ss_pred ccc-----------cccccccEEEecCCccCchHH
Q 043910 287 FSI-----------SYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 287 ~~~-----------~~~~~l~~l~~~~c~~l~~~~ 310 (353)
... ...+....+.+.+|.++...+
T Consensus 913 ~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 913 GSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred CCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 110 001122345677887776544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.4e-24 Score=197.70 Aligned_cols=275 Identities=18% Similarity=0.293 Sum_probs=162.2
Q ss_pred cccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEEccCCCccc
Q 043910 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQ 94 (353)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~ 94 (353)
..++++.| .++.|+.||++.|++. ..|..+.+-. +-.|+|++|+++.+|. +.++..|-.|||++|++..
T Consensus 93 sGiP~diF-~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 93 SGIPTDIF-RLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred CCCCchhc-ccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence 33444433 5677777777777763 2344444444 6677777777777772 3367777777777777777
Q ss_pred cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC-CcccchhhhcCCCccEEEccCccCcccCcccc
Q 043910 95 LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ-LKRLPAEILSAGNMEEMILNGTAIEELPSSIE 173 (353)
Q Consensus 95 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~ 173 (353)
+|+.+..+.+|+.|+++++.... .. ...+-.+.+|++|.+++.+. ...+|.++..+.+|+.++++.|.+..+|..+.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~h-fQ-LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly 242 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNH-FQ-LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY 242 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhH-HH-HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh
Confidence 77777777777777777764211 10 11222345555666665432 23456666666666666666666666666666
Q ss_pred CCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc--ccchhHhhccCCcee
Q 043910 174 CLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE--KIPTNVIHLSRLHSF 251 (353)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L 251 (353)
++++|+.|++++ +.++.+....+...+|++|++++|+++.+|..+..++.|+.|.+.+|+++ .+|+.++.+.+|..+
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 666666666666 34555554455556666666666666666666666666666666666544 556666666666655
Q ss_pred ccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 252 CLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 252 ~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
..++ +.++-+|+. |..|+.|.++.+ .+-.+|..... ++.++.|++.+.+.|-
T Consensus 322 ~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHl--L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 322 HAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHL--LPDLKVLDLRENPNLV 376 (1255)
T ss_pred Hhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhh--cCCcceeeccCCcCcc
Confidence 5544 445555553 345666666543 34445554443 4556666666666653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=5e-22 Score=179.66 Aligned_cols=283 Identities=19% Similarity=0.184 Sum_probs=186.1
Q ss_pred EEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceE
Q 043910 8 ICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVL 84 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~ 84 (353)
-.+|+++++.-++....|.++++|+++.+..|.++. .|....... ++.|+|.+|.+..+. +...++.|+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------cccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 357889998888999999999999999999988742 222222223 888888888887776 3446778888
Q ss_pred EEccCCCccccCCCCcC-CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 85 LEVPHSNIQQLGDGGQH-HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 85 L~L~~~~i~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
|||+.|.|+.++...+. -.++++|+++.|. +|.+. ...|..+.+|..|.|+.|....--+..|..+++|+.|++..|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccc-ccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 88888888887754443 4788888888764 33333 346667777777777775433333344555777777777776
Q ss_pred cCccc-Ccc------------------------ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCcc-C
Q 043910 164 AIEEL-PSS------------------------IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQL-P 216 (353)
Q Consensus 164 ~i~~l-~~~------------------------~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~-~ 216 (353)
.|.-+ ... |..+.++++|++..|+ +..+. .++..+++|+.|++++|.|..+ +
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeec
Confidence 55522 112 3445555556665533 33332 3455667777777777766643 4
Q ss_pred cccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCCc---CccccCcccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCA---ALESLSDLFS 288 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~---~l~~~~~~~~ 288 (353)
..+..+++|++|++++|+++.++. .+..+++|+.|.+++| .++.+.+ .+.+|++||+.++. -+++....+.
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 456677778888888888776655 5667777888888774 3444433 45788888887642 2444333332
Q ss_pred ccccccccEEEecCC
Q 043910 289 ISYDYYIRCFELSTN 303 (353)
Q Consensus 289 ~~~~~~l~~l~~~~c 303 (353)
+++.|++|.+.+.
T Consensus 390 --gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 390 --GLPSLRKLRLTGN 402 (873)
T ss_pred --cchhhhheeecCc
Confidence 3788999999887
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.8e-22 Score=183.98 Aligned_cols=272 Identities=21% Similarity=0.324 Sum_probs=190.6
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC--CCC-CCCCCCCceEEEccCCCccccCC
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK--SLP-SITHPAKLVLLEVPHSNIQQLGD 97 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~--~l~-~~~~~~~L~~L~L~~~~i~~l~~ 97 (353)
++.++.+.+|++|.+.+|++.. .-..+..++ ||.+.++.|+++ .+| +++.++.|..|||++|++.+.|.
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~~-------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLIS-------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhHh-------hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence 6677788888888888887632 223333344 888888888765 455 67788888888888888888888
Q ss_pred CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc-------------
Q 043910 98 GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA------------- 164 (353)
Q Consensus 98 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 164 (353)
.....+++-.|++++++ +..++ -+.+.++..|-.|++++ +.+..+|+.+..+.+|++|.+++|.
T Consensus 121 ~LE~AKn~iVLNLS~N~-IetIP-n~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNN-IETIP-NSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhcCcEEEEcccCc-cccCC-chHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 88888888888888764 33343 23455666666777776 3455555555545455555554443
Q ss_pred -----------Cc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEee
Q 043910 165 -----------IE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLR 231 (353)
Q Consensus 165 -----------i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 231 (353)
-+ .+|.++..+.+|..+|++. +.+..+|+.+.++++|+.|++++|.|+.+....+...+|++|+++
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccc
Confidence 22 5677777788888888886 567778888888888888999988888776666777788899999
Q ss_pred CCCCcccchhHhhccCCceeccccccc-cccCCCCCCC---cceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 232 KTKFEKIPTNVIHLSRLHSFCLSYCER-LQSLPKLPCN---LKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 232 ~~~l~~l~~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~---L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
.|+++.+|..+..+++|+.|.+.+|.. ...+|....+ |+.+...+ ..++-+|.+.-. |..|+.|.+.....++
T Consensus 277 rNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcR--C~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 277 RNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCR--CVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhh--hHHHHHhcccccceee
Confidence 999989999888999999988877543 3677877654 44444444 357777766554 6666666665554333
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=5e-22 Score=172.33 Aligned_cols=280 Identities=26% Similarity=0.293 Sum_probs=198.4
Q ss_pred EEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC-CCCCCCceEE
Q 043910 8 ICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS-ITHPAKLVLL 85 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~-~~~~~~L~~L 85 (353)
..++++.+....+.. .+..+..|..++..+|+++ ..++++.+.. +..+++.++.++.+|+ ...++.|+.+
T Consensus 117 ~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i~-------slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSNELKELPD-SIGRLLDLEDLDATNNQIS-------SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhccccceeecCc-hHHHHhhhhhhhccccccc-------cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 344555554444443 3455666777777777763 3445554444 7777788888777763 3357788888
Q ss_pred EccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh-cCCCccEEEccCcc
Q 043910 86 EVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTA 164 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 164 (353)
|...|-++.+|+..+.+.+|..|++.++. +...+.|..|..|.+|++.. ++++.+|.+.+ .+.++..|++++|+
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nk----i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNK----IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcc----cccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc
Confidence 88888888888888888888888887763 33455677777777777776 46666676655 67778888888888
Q ss_pred CcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCcc---------------------------------
Q 043910 165 IEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG--------------------------------- 211 (353)
Q Consensus 165 i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~--------------------------------- 211 (353)
++++|..+..+.+|.+||+++ +.++.+|.+++++ +|+.|.+.+|.
T Consensus 264 lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 888888887788888888886 5677788778887 78888888776
Q ss_pred --------------------------------------------------------------------------------
Q 043910 212 -------------------------------------------------------------------------------- 211 (353)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (353)
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence
Q ss_pred --CCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC-----------------------C--
Q 043910 212 --ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-----------------------K-- 264 (353)
Q Consensus 212 --i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~-----------------------~-- 264 (353)
+..+|..+..+++|..|++++|.+..+|..++.+..|+.++++.| ....+| .
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 112344456678888999999888899998888888999999886 222322 2
Q ss_pred --CCCCcceeecCCCcCccccCccccccccccccEEEecCCccC
Q 043910 265 --LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKL 306 (353)
Q Consensus 265 --~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l 306 (353)
.+.+|..||+.++ .++.+|... +.+++++.|++++.+--
T Consensus 501 l~nm~nL~tLDL~nN-dlq~IPp~L--gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNN-DLQQIPPIL--GNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCC-chhhCChhh--ccccceeEEEecCCccC
Confidence 2356777888774 577777654 34888999999988654
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.7e-17 Score=159.74 Aligned_cols=256 Identities=23% Similarity=0.251 Sum_probs=175.6
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccC
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPH 89 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~ 89 (353)
+|++.....+++.. +. ++|+.|++.+|.++. .+.. .+.|++|++++|+++.+|.. .++|+.|++++
T Consensus 206 LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-------LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~ 271 (788)
T PRK15387 206 LNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-------LPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFS 271 (788)
T ss_pred EEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-------CCCC--CCCCcEEEecCCccCcccCc--ccccceeeccC
Confidence 45555544444432 22 478889998888753 2221 13388999999988888754 47888889988
Q ss_pred CCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC
Q 043910 90 SNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP 169 (353)
Q Consensus 90 ~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~ 169 (353)
|.++.++. ...+|+.|++++|. ++.++. ..++|++|++++|. +..+|.. ..+|+.|++++|.++.+|
T Consensus 272 N~L~~Lp~---lp~~L~~L~Ls~N~-Lt~LP~-----~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 272 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-----LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred Cchhhhhh---chhhcCEEECcCCc-cccccc-----cccccceeECCCCc-cccCCCC---cccccccccccCcccccc
Confidence 88887764 23567888888763 444432 24678999998864 4445542 346778888888888777
Q ss_pred ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCc
Q 043910 170 SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLH 249 (353)
Q Consensus 170 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~ 249 (353)
.. ..+|++|++++| .++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.. .++|+
T Consensus 339 ~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~ 405 (788)
T PRK15387 339 TL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELK 405 (788)
T ss_pred cc---ccccceEecCCC-ccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCC
Confidence 42 257888888874 56667753 35677788888888877753 35688888888888877753 35788
Q ss_pred eeccccccccccCCCCCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 250 SFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 250 ~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
.|++++|. ++.+|..+.+|+.|+++++ .++.+|.... .+..++.+++++++ ++...
T Consensus 406 ~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~--~L~~L~~LdLs~N~-Ls~~~ 461 (788)
T PRK15387 406 ELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLI--HLSSETTVNLEGNP-LSERT 461 (788)
T ss_pred EEEccCCc-CCCCCcchhhhhhhhhccC-cccccChHHh--hccCCCeEECCCCC-CCchH
Confidence 88888854 6678877778888888875 4777776533 35678888888884 44433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2e-20 Score=162.48 Aligned_cols=259 Identities=24% Similarity=0.320 Sum_probs=157.4
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC-CCCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
-..|+.+++++|.+.. ..+.+..+. +..+.+.++++..+| +++.+..++.++.++|++++++........+
T Consensus 44 qv~l~~lils~N~l~~-------l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV-------LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hcchhhhhhccCchhh-------ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence 3456677777776633 223333333 777777777766666 4446677777777777777777777777777
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
++++++++...+ . .+.++.+-.|+.++..+ +.+..+|.++.++.++..+++.+|+++.+|+..-.++.|+++|...
T Consensus 117 ~~l~~s~n~~~e-l--~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELKE-L--PDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhccccceee-c--CchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 777777665432 2 23455666666666665 3445556666666666667777777666666555566666666665
Q ss_pred CCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHh-hccCCceeccccccccccCCC
Q 043910 186 CKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFCLSYCERLQSLPK 264 (353)
Q Consensus 186 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~-~l~~L~~L~l~~~~~l~~l~~ 264 (353)
+.++.+|+.++.+.+|+.|++.+|.+..+|+ |..|+.|.++.++.|++..+|.... +++++..||++. +.++++|.
T Consensus 193 -N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pd 269 (565)
T KOG0472|consen 193 -NLLETLPPELGGLESLELLYLRRNKIRFLPE-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPD 269 (565)
T ss_pred -hhhhcCChhhcchhhhHHHHhhhcccccCCC-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCch
Confidence 4566666666666666666666666666663 6666666666666666666665544 566666666666 35566665
Q ss_pred CC---CCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 265 LP---CNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 265 ~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
.. .+|.+||++++ .++.+|....- . .|+.+.+.|.|
T Consensus 270 e~clLrsL~rLDlSNN-~is~Lp~sLgn--l-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN-DISSLPYSLGN--L-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCC-ccccCCccccc--c-eeeehhhcCCc
Confidence 32 34556666653 45555443222 2 34555555554
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=3.7e-16 Score=152.54 Aligned_cols=246 Identities=18% Similarity=0.213 Sum_probs=153.1
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEE
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI 108 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L 108 (353)
.+.+.|+++++.++. .|..+. ..++.|++++|.++.+|... .++|+.|++++|.++.++..+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~~Lts-------LP~~Ip-~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLTT-------IPACIP-EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL--PDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcCc-------CCcccc-cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh--hccccEE
Confidence 356777777766642 122111 13777888888877777543 357888888888877776533 3467788
Q ss_pred ecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCC
Q 043910 109 ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188 (353)
Q Consensus 109 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~ 188 (353)
++++|. ++.++ ..+ ..+|+.|++++| .+..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++| .
T Consensus 247 ~Ls~N~-L~~LP--~~l--~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~ 315 (754)
T PRK15370 247 ELSINR-ITELP--ERL--PSALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-S 315 (754)
T ss_pred ECcCCc-cCcCC--hhH--hCCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-c
Confidence 887764 33332 122 246788888764 3445665442 478888888887777765442 46777777774 3
Q ss_pred CcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCC-C
Q 043910 189 LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLP-C 267 (353)
Q Consensus 189 ~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~ 267 (353)
+..+|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|++..+|..+ .++|+.|++++| .++.+|..+ .
T Consensus 316 Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~~ 388 (754)
T PRK15370 316 LTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENLPA 388 (754)
T ss_pred cccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhHHH
Confidence 55565433 3567777888877777765443 57788888888777776644 357778888775 355666433 4
Q ss_pred CcceeecCCCcCccccCcccc--ccccccccEEEecCCc
Q 043910 268 NLKELDADHCAALESLSDLFS--ISYDYYIRCFELSTNY 304 (353)
Q Consensus 268 ~L~~L~l~~c~~l~~~~~~~~--~~~~~~l~~l~~~~c~ 304 (353)
.|+.|++++| .++.+|.... ....+.+..+++.+++
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6777777775 4566654321 1123445667777664
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.5e-16 Score=150.87 Aligned_cols=238 Identities=18% Similarity=0.254 Sum_probs=169.7
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
.+++++.+..+++.. + .++|+.|++++|.++. . +..+ ...|++|++++|.++.+|... .++|+.|+++
T Consensus 182 ~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N~Lts-L------P~~l-~~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls 249 (754)
T PRK15370 182 ELRLKILGLTTIPAC-I--PEQITTLILDNNELKS-L------PENL-QGNIKTLYANSNQLTSIPATL-PDTIQEMELS 249 (754)
T ss_pred EEEeCCCCcCcCCcc-c--ccCCcEEEecCCCCCc-C------Chhh-ccCCCEEECCCCccccCChhh-hccccEEECc
Confidence 345555544444432 2 3579999999998863 2 2222 124999999999999888533 4589999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.+..++..+ ..+|+.|++++| .++.++. .+ .++|+.|++++|+ +..+|..+ ..+|+.|++++|.++.+
T Consensus 250 ~N~L~~LP~~l--~s~L~~L~Ls~N-~L~~LP~--~l--~~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 250 INRITELPERL--PSALQSLDLFHN-KISCLPE--NL--PEELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CCccCcCChhH--hCCCCEEECcCC-ccCcccc--cc--CCCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCccccC
Confidence 99998887654 357999999865 4554432 22 2589999999964 44566543 24788999999999888
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCC
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 248 (353)
|..+. ++|++|++++|. ++.+|..+ +++|+.|++++|+++.+|..+. ++|+.|++++|.+..+|..+. ..|
T Consensus 320 P~~l~--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL 390 (754)
T PRK15370 320 PETLP--PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AAL 390 (754)
T ss_pred Ccccc--ccceeccccCCc-cccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHH
Confidence 76543 689999998864 66677654 3689999999999888876553 689999999999988887654 368
Q ss_pred ceeccccccccccCCCCC-------CCcceeecCCCc
Q 043910 249 HSFCLSYCERLQSLPKLP-------CNLKELDADHCA 278 (353)
Q Consensus 249 ~~L~l~~~~~l~~l~~~~-------~~L~~L~l~~c~ 278 (353)
+.|++++| .+..+|..+ +.+..+++.+++
T Consensus 391 ~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 391 QIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 88999885 455666532 456778887764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=5.5e-18 Score=161.05 Aligned_cols=213 Identities=27% Similarity=0.361 Sum_probs=118.0
Q ss_pred cceEeecccCCCCCCCCC-CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSIT-HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
+++++++.+.+..+|++. .+.+|+.++..+|++..++.......+|+.+.+..|. +..+ ++....++.|++|++..
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yi--p~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYI--PPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhC--CCcccccceeeeeeehh
Confidence 666666666666666433 5666666666666666666666666666666666553 2222 23445577888888887
Q ss_pred CCCCcccchhhh--------------------------cCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcc
Q 043910 139 CSQLKRLPAEIL--------------------------SAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKS 191 (353)
Q Consensus 139 ~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~ 191 (353)
| .+..+|+.+. ....|+.|++.+|.++ ..-+.+.++++|+.|++++ +.+..
T Consensus 320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~ 397 (1081)
T KOG0618|consen 320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNS 397 (1081)
T ss_pred c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-ccccc
Confidence 4 4555554331 1123444555555555 2333445555666666665 34555
Q ss_pred cCc-cccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccc-cCCC-CC-C
Q 043910 192 LPK-GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQ-SLPK-LP-C 267 (353)
Q Consensus 192 l~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~-~l~~-~~-~ 267 (353)
+|+ .+.++..|+.|++++|.++.+|..+..+..|++|...+|++..+| .+.++++|+.+|++.|+.-. .++. .+ +
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 553 345555566666666666666555555566666666556555555 45556666666665533211 1121 22 4
Q ss_pred CcceeecCCCc
Q 043910 268 NLKELDADHCA 278 (353)
Q Consensus 268 ~L~~L~l~~c~ 278 (353)
+|++||++|++
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 56666666554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=9.9e-18 Score=159.37 Aligned_cols=266 Identities=23% Similarity=0.301 Sum_probs=201.2
Q ss_pred hcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 26 TKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
..+++|+.|....|.+.. . .+..++++.|+...|.++.+...+...+|+++++++++++.++.-+..+.+|
T Consensus 196 s~~~~l~~l~c~rn~ls~-----l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSE-----L----EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred hhccchhhhhhhhcccce-----E----EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccc
Confidence 356666666666655522 0 1123448888888888876666667889999999999999999777889999
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccc-------------
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI------------- 172 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~------------- 172 (353)
+.++..++.. +.. +..+....+|+.|....| .++.+|......++|++|++..|.+..+|..+
T Consensus 267 e~l~~n~N~l-~~l--p~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 267 EALNANHNRL-VAL--PLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred eEecccchhH-Hhh--HHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 9999998754 333 235667788999998884 56677777777999999999999988776422
Q ss_pred -------------cCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCccc
Q 043910 173 -------------ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 173 -------------~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l 238 (353)
..++.|+.|.+.+|..-+..-+.+.+..+|+.|++++|++..+|. .+.++..|++|+++||.++.+
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 112345556666644333333347788999999999999998886 467888999999999999999
Q ss_pred chhHhhccCCceeccccccccccCCCC--CCCcceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 239 PTNVIHLSRLHSFCLSYCERLQSLPKL--PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
|..+..+++|+.|...+ +.+..+|+. .+.|+.+|++. ..|+.+......+. ++|+.|++++..++.
T Consensus 423 p~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred hHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 99999999999998766 567777763 47899999985 57888776666532 789999999998654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=2.2e-15 Score=146.52 Aligned_cols=232 Identities=25% Similarity=0.260 Sum_probs=177.3
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEE
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI 108 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L 108 (353)
.+-..|+++++.++. . |..+. ..++.|++.+|+++.+|.. +++|++|++++|+++.++. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lts-L------P~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~---lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTT-L------PDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV---LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCc-C------Ccchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC---ccccccee
Confidence 457789999998853 2 22221 2489999999999999864 6899999999999998864 25789999
Q ss_pred ecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCC
Q 043910 109 ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188 (353)
Q Consensus 109 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~ 188 (353)
++++|. ++.++. ...+|+.|++++|. +..+|. .+++|+.|++++|.++.+|... .+|+.|++++| .
T Consensus 268 ~Ls~N~-L~~Lp~-----lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~ 333 (788)
T PRK15387 268 SIFSNP-LTHLPA-----LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-Q 333 (788)
T ss_pred eccCCc-hhhhhh-----chhhcCEEECcCCc-cccccc---cccccceeECCCCccccCCCCc---ccccccccccC-c
Confidence 999874 444432 23678899999964 556664 2478999999999999887633 46788889885 4
Q ss_pred CcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCC
Q 043910 189 LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCN 268 (353)
Q Consensus 189 ~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 268 (353)
++.+|.. ..+|+.|++++|+++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++| .++.+|..+++
T Consensus 334 L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l~s~ 403 (788)
T PRK15387 334 LTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPSE 403 (788)
T ss_pred ccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCcccC
Confidence 6667742 35799999999999988863 35788999999999888863 357999999986 57788888889
Q ss_pred cceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 269 LKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 269 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
|+.|+++++. ++.+|.. +.+|+.|+++++
T Consensus 404 L~~LdLS~N~-LssIP~l-----~~~L~~L~Ls~N 432 (788)
T PRK15387 404 LKELMVSGNR-LTSLPML-----PSGLLSLSVYRN 432 (788)
T ss_pred CCEEEccCCc-CCCCCcc-----hhhhhhhhhccC
Confidence 9999999974 7777743 235667777765
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=5e-18 Score=131.50 Aligned_cols=161 Identities=25% Similarity=0.386 Sum_probs=117.4
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLL 179 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 179 (353)
+.+.+++.|.++++. ++.+ ++.++.+.+|+.|++++ +.++++|.++.++++|+.|++.-|++..+|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNK-l~~v--ppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVV--PPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCc-eeec--CCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 344455555555543 2222 34566677777777776 4667777778888888888888888778888888888888
Q ss_pred EEeccCCCCCc-ccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 180 HLGLRDCKRLK-SLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 180 ~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
.||+++|+... .+|..|..+..|+.|.++.|.+.-+|..++.+++|+.|.++.|.+.++|..++.+++|+.|.+.+| .
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-r 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-R 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-e
Confidence 88888766543 467777778888888888888888888888888888888888888888888888888888888874 4
Q ss_pred cccCCCC
Q 043910 259 LQSLPKL 265 (353)
Q Consensus 259 l~~l~~~ 265 (353)
++-+|..
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 5555543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-17 Score=129.63 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=93.9
Q ss_pred CCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhc
Q 043910 72 SLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151 (353)
Q Consensus 72 ~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 151 (353)
.++..+.+.++..|.+++|+++.+++.+..+.+|+.|+++++ ++++. +..++.+++|+.|++.- +.+...|..|+.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~l--p~~issl~klr~lnvgm-nrl~~lprgfgs 100 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEEL--PTSISSLPKLRILNVGM-NRLNILPRGFGS 100 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhc--Chhhhhchhhhheecch-hhhhcCccccCC
Confidence 444555555566666666666666655555666666665543 23333 23455556666666554 233445555666
Q ss_pred CCCccEEEccCccCc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 152 AGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
++.|+.|++.+|++. .+|..|..+..|+.|.++. +...-+|..++++++|+.|.+..|.+..+|..++.+..|++|.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 666666666665554 4555555555555555555 3344455555666666666666665555665566666666666
Q ss_pred eeCCCCcccchhHhh
Q 043910 230 LRKTKFEKIPTNVIH 244 (353)
Q Consensus 230 l~~~~l~~l~~~l~~ 244 (353)
+.+|+++.+|+.+++
T Consensus 180 iqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 180 IQGNRLTVLPPELAN 194 (264)
T ss_pred cccceeeecChhhhh
Confidence 666666555555443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=4e-16 Score=135.67 Aligned_cols=285 Identities=16% Similarity=0.106 Sum_probs=165.2
Q ss_pred EEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cce-EeecccCCCCCCC--CCCCCCc
Q 043910 7 GICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRY-LFWHGYPLKSLPS--ITHPAKL 82 (353)
Q Consensus 7 ~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~-L~l~~~~~~~l~~--~~~~~~L 82 (353)
.+.+++..+.+..+.+.+|+.+++||+||++.|+++.. .+.+|.-+. +.. +..++|+++.+|. +..+..|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI------APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhc------ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 34455666666778888888888888888888887542 234444444 333 3344477777773 3366777
Q ss_pred eEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc------------cchhh
Q 043910 83 VLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR------------LPAEI 149 (353)
Q Consensus 83 ~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~ 149 (353)
+.|.+.-|++.-+. +.+..++++..|.+.++.. ..+. ...+..+..++.+.+..|.++.+ .|..+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhc-cccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 77777777665543 2344566666666666532 1121 23566666777776666543211 12222
Q ss_pred hcCCCccEEEccCccCcccCcc-ccC-CCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC-cccCCCCCC
Q 043910 150 LSAGNMEEMILNGTAIEELPSS-IEC-LSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP-ENLGQLFSL 225 (353)
Q Consensus 150 ~~~~~L~~L~l~~~~i~~l~~~-~~~-l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L 225 (353)
+.........+.+.++..+... +.. +..+..--.+.|......|. .|..+++|+.|++++|.++.+. .++.....+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 2233333333333344333221 111 11111111223333444442 4677888888888888877653 456777778
Q ss_pred cEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCCCCCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 226 EEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 226 ~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
++|.+..|++..+.. .+.++.+|+.|++.+| .++.+.+..+. ....|.++.+-..|
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N----------------------~it~~~~~aF~-~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN----------------------QITTVAPGAFQ-TLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCC----------------------eeEEEeccccc-ccceeeeeehccCc
Confidence 888888887765544 4456666666666654 34555444442 34567888888888
Q ss_pred cCchHHHHhHHHHHHHhh
Q 043910 305 KLDRNELRSILEDALQKI 322 (353)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~ 322 (353)
..++.....+.+|.+.+-
T Consensus 358 ~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 358 FNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ccCccchHHHHHHHhhCC
Confidence 888989999988877654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=1.4e-14 Score=130.35 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=24.9
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK 71 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 71 (353)
...|..+++|++|++++|.++..... .....+...+ +++++++++.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~--~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAK--ALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHH--HHHHHHhhCCCceEEeccccccC
Confidence 34556677788888888776432111 1111222222 666666665543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=4.9e-14 Score=126.78 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=17.0
Q ss_pred cceEeecccCCCC-----CC-CCCCCCCceEEEccCCCcc
Q 043910 60 IRYLFWHGYPLKS-----LP-SITHPAKLVLLEVPHSNIQ 93 (353)
Q Consensus 60 L~~L~l~~~~~~~-----l~-~~~~~~~L~~L~L~~~~i~ 93 (353)
++.++++++.++. ++ .....++++.++++++.+.
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 6666666666532 12 1223445666666555443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=1.6e-13 Score=119.57 Aligned_cols=197 Identities=22% Similarity=0.221 Sum_probs=137.1
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeee-CCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYN-SSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVL 84 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~ 84 (353)
.+|++++.+..+.+++|+++++|.+|.+.+ |.++... ...|..+. ++-|.+.-+++..++ .+..++++..
T Consensus 95 rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~------k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 95 RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP------KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh------hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 468888888889999999999999988888 6664321 22344455 888888888888877 3447889999
Q ss_pred EEccCCCccccCC-CCcCCCCccEEecCCCcCcC----------------------------------------------
Q 043910 85 LEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVT---------------------------------------------- 117 (353)
Q Consensus 85 L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~---------------------------------------------- 117 (353)
|.+.+|.++.+.. .+.....++.+.+..+.++-
T Consensus 169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 9999998887765 33334555555433332110
Q ss_pred ----------CCCC----CccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEe
Q 043910 118 ----------KTPN----PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLG 182 (353)
Q Consensus 118 ----------~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~ 182 (353)
+.++ ...|..+++|+.|++++|.....-+..|....++++|++.+|++..+.. .|..+..|++|+
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 0000 0147788899999999876655555667778888888888888775543 466778888888
Q ss_pred ccCCCCCcccCccccCCCCCCEEEeeCcc
Q 043910 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 183 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 211 (353)
+++|+.....|..|..+.+|.+|++-.|.
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCc
Confidence 88865444456667777888888877664
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=9.5e-12 Score=123.82 Aligned_cols=232 Identities=24% Similarity=0.334 Sum_probs=144.9
Q ss_pred CCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcC-cCCCCCCccccCCccCcEEeecCCCCCcccchhhhc
Q 043910 73 LPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNF-VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151 (353)
Q Consensus 73 l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 151 (353)
.|........+...+-++.+..++.. ..+++|+.|.+..+.. +..++ ...|..++.|++||+++|...+.+|..++.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccchhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44444445566666666666655432 3344676666666542 22222 234677888888888887777888888888
Q ss_pred CCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC---ccCcccCCCCCCcEE
Q 043910 152 AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT---QLPENLGQLFSLEEF 228 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~---~~~~~~~~l~~L~~L 228 (353)
+-+|++|+++++.+..+|..+..+++|.+|++..+.....+|.....+++|++|.+...... ..-..+..+.+|+.+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 88888888888888888888888888888888876666666655556888888877665421 111223344444444
Q ss_pred EeeCCCC--------------------------cccchhHhhccCCceeccccccccccCCC--------C-CCCcceee
Q 043910 229 CLRKTKF--------------------------EKIPTNVIHLSRLHSFCLSYCERLQSLPK--------L-PCNLKELD 273 (353)
Q Consensus 229 ~l~~~~l--------------------------~~l~~~l~~l~~L~~L~l~~~~~l~~l~~--------~-~~~L~~L~ 273 (353)
.+..... ...+..+..+.+|+.|.+.+|........ . ++++..+.
T Consensus 674 s~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 674 SITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred eeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 4433321 22333445566677777776654322111 1 44566667
Q ss_pred cCCCcCccccCccccccccccccEEEecCCccCchH
Q 043910 274 ADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRN 309 (353)
Q Consensus 274 l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 309 (353)
+.+|..+.+..+..+. ++|+.+.+..|..+.+.
T Consensus 754 ~~~~~~~r~l~~~~f~---~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFA---PHLTSLSLVSCRLLEDI 786 (889)
T ss_pred hhccccccccchhhcc---CcccEEEEecccccccC
Confidence 7777777777766554 67888899999777653
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=3.6e-11 Score=111.48 Aligned_cols=191 Identities=27% Similarity=0.325 Sum_probs=129.4
Q ss_pred EeecccCC-CCCCCCCCCCCceEEEccCCCccccCCCCcCCC-CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCC
Q 043910 63 LFWHGYPL-KSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC-KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCS 140 (353)
Q Consensus 63 L~l~~~~~-~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 140 (353)
+....+.+ .........+.++.+++.++.+..++....... +|+.|+++++.. ...+ ..+..+++|+.|++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~--~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLP--SPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhh--hhhhccccccccccCCc-
Confidence 55555554 333344455677888888888877777666664 788888877632 1111 35677788888888874
Q ss_pred CCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccC
Q 043910 141 QLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLG 220 (353)
Q Consensus 141 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 220 (353)
.+.++|...+..++|+.|++++|.+..+|..+.....|+++.+++|. ....+..+..+.++..+.+.++++..++..++
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhc
Confidence 45566655556778888888888888887766566668888887754 33344446677777777777777776666677
Q ss_pred CCCCCcEEEeeCCCCcccchhHhhccCCceecccccccc
Q 043910 221 QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERL 259 (353)
Q Consensus 221 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 259 (353)
.+++++.|++++|.+..++. ++...+++.|+++++...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 77778888888887776666 667777888888775444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.6e-12 Score=118.47 Aligned_cols=171 Identities=24% Similarity=0.354 Sum_probs=95.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+..-...|++.|++..++.....+..|..+.+.++..- .+ ...+..+..|++|+++.| .+..+|..++.+ -|+.|
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~i--p~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TI--PEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVL 148 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ec--chhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeE
Confidence 44445556666666666655555555555555544321 11 234555666666666663 344445444433 35666
Q ss_pred EccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc
Q 043910 159 ILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 159 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l 238 (353)
.+++|+++.+|..++....|..||.+.|. +..+|..++.+.+|+.|++.+|++..+|+.+. .-.|..||++.|++..+
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYL 226 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeec
Confidence 66666666666666655666666666533 44455555566666666666666666665555 33455666666666666
Q ss_pred chhHhhccCCceeccccc
Q 043910 239 PTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~ 256 (353)
|-.+.+++.|+.|-+.+|
T Consensus 227 Pv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENN 244 (722)
T ss_pred chhhhhhhhheeeeeccC
Confidence 666666666666665554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7.5e-11 Score=94.95 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh
Q 043910 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI 149 (353)
Q Consensus 70 ~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 149 (353)
++..+...++..+++|+|.+|.|+.+......+.+|+.|++++|. ++ ....+..+++|++|++++| .++.++..+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~---~l~~l~~L~~L~~L~L~~N-~I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-IT---KLEGLPGLPRLKTLDLSNN-RISSISEGL 83 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S-----TT----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccccccccccccccchhhhhcCCCEEECCCCC-Cc---cccCccChhhhhhcccCCC-CCCccccch
Confidence 333333334444555555555554443221234445555555442 11 1223334455555555553 222232222
Q ss_pred -hcCCCccEEEccCccCcccC--ccccCCCCCCEEeccCC
Q 043910 150 -LSAGNMEEMILNGTAIEELP--SSIECLSRLLHLGLRDC 186 (353)
Q Consensus 150 -~~~~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~ 186 (353)
..+++|++|++++|+|..+. ..+..+++|++|++.+|
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 23455555555555444321 12334455555555543
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=3.3e-11 Score=101.97 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=126.6
Q ss_pred cceEeecccCCCCCCCCC-CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSIT-HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
|..+.++.+..+.+..+. .-+.|+.+.+.+..++..+. ......+....-..-.-.+ .+....+..+..|+++++++
T Consensus 216 l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~-G~~~~~~dTWq~LtelDLS~ 293 (490)
T KOG1259|consen 216 LKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSN-GSALVSADTWQELTELDLSG 293 (490)
T ss_pred hheeeeeccchhheeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccC-CceEEecchHhhhhhccccc
Confidence 566666666655444333 33566666666655554322 1111222222111111111 11122455667888999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~ 218 (353)
+.++.+..+..-.++++.|++++|.|..+.. +..+++|+.||+++ +.+..+...-.++.+++.|.+++|.+..+. +
T Consensus 294 -N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-G 369 (490)
T KOG1259|consen 294 -NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQNKIETLS-G 369 (490)
T ss_pred -cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhhhhHhhhh-h
Confidence 5667777777788899999999999887754 77889999999998 446655544457888899999998877654 3
Q ss_pred cCCCCCCcEEEeeCCCCccc--chhHhhccCCceecccccc
Q 043910 219 LGQLFSLEEFCLRKTKFEKI--PTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~ 257 (353)
+..+-+|..||+++|++..+ ...++++|.|+.+.+.+|+
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 66777899999999988744 3468889999999888864
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.5e-12 Score=111.53 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred cceEeecccCCCCCCC---CCCCCCceEEEccCCCccccC---CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcE
Q 043910 60 IRYLFWHGYPLKSLPS---ITHPAKLVLLEVPHSNIQQLG---DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~---~~~~~~L~~L~L~~~~i~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 133 (353)
|+.+.|.++.+...+. .-.+++++.|||+.|-+..+. .....+|+|+.|+++.|........ ..-..++.|+.
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~~lK~ 201 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLSHLKQ 201 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhhhhhe
Confidence 5555555555544441 124555566666555444322 2233455555555555533221111 11123445555
Q ss_pred EeecCCCCCcc-cchhhhcCCCccEEEccCcc-CcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCc
Q 043910 134 LNLSGCSQLKR-LPAEILSAGNMEEMILNGTA-IEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGC 210 (353)
Q Consensus 134 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 210 (353)
|.++.|..... +......+++|+.|++.+|. +..-.....-+..|+.|++++|+.++.-- ...+.++.|+.|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 55555544321 22223345555555555552 21111112223445555555544433210 12345555555555555
Q ss_pred cCCc--cCcc-----cCCCCCCcEEEeeCCCCcccch--hHhhccCCceecccc
Q 043910 211 GITQ--LPEN-----LGQLFSLEEFCLRKTKFEKIPT--NVIHLSRLHSFCLSY 255 (353)
Q Consensus 211 ~i~~--~~~~-----~~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~ 255 (353)
++.+ +|.. ....++|+.|++..|++..++. .+..+++|+.|.+.+
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 5542 2221 1234455555555555543332 233444445544443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=1.5e-10 Score=107.31 Aligned_cols=176 Identities=25% Similarity=0.367 Sum_probs=145.2
Q ss_pred cceEeecccCCCCCCCCCCCC--CceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPA--KLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~--~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
+..+++.++.+..++...... +|+.|++++|++..++.....+++|+.|+++.|. +++++ ...+..+.|+.|+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~--~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLP--KLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhh--hhhhhhhhhhheecc
Confidence 889999999999999766543 8999999999999987778899999999999984 23232 123378899999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
+ +.+..+|.....+..|+++.+++|.+...+..+..+.++..+.+.. +.+..++..++.+++++.|++++|.++.++.
T Consensus 195 ~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 195 G-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred C-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceecccccccccccc
Confidence 9 4667778766667789999999998777777888889999998776 5566556778899999999999999998887
Q ss_pred ccCCCCCCcEEEeeCCCCcccchh
Q 043910 218 NLGQLFSLEEFCLRKTKFEKIPTN 241 (353)
Q Consensus 218 ~~~~l~~L~~L~l~~~~l~~l~~~ 241 (353)
++...+++.|+++++.+...+..
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 88889999999999988755443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=7.5e-11 Score=99.85 Aligned_cols=130 Identities=26% Similarity=0.310 Sum_probs=62.5
Q ss_pred CCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEE
Q 043910 80 AKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMI 159 (353)
Q Consensus 80 ~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 159 (353)
+.|+.+||++|.|+.+.......|+++.|++++|...+ ...++.+++|+.|++++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~----v~nLa~L~~L~~LDLS~--------------------- 338 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT----VQNLAELPQLQLLDLSG--------------------- 338 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee----ehhhhhcccceEeeccc---------------------
Confidence 34555555555555555555555555555555542211 12244445555555555
Q ss_pred ccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc--CcccCCCCCCcEEEeeCCCCcc
Q 043910 160 LNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL--PENLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 160 l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~l~~ 237 (353)
|.++.+.-+-..+-++++|.+++ +.+..+. .+.++-+|..|++.+|+|..+ ...++.++.|+++.+.+|++..
T Consensus 339 ---N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 339 ---NLLAECVGWHLKLGNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ---chhHhhhhhHhhhcCEeeeehhh-hhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 44443333333444445555554 2233332 244455555555555555422 1235556666666666666554
Q ss_pred cc
Q 043910 238 IP 239 (353)
Q Consensus 238 l~ 239 (353)
++
T Consensus 414 ~v 415 (490)
T KOG1259|consen 414 SV 415 (490)
T ss_pred cc
Confidence 43
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.8e-10 Score=91.65 Aligned_cols=124 Identities=26% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCccCcEEeecCCCCCcccchhhh-cCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccc-cCCCCCCE
Q 043910 127 SLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGL-CKLKSLKF 204 (353)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~ 204 (353)
+..++++|++.+|. +..+. .++ .+.+|+.|++++|.|+.+. .+..+++|++|++++ +.++.+.+.+ ..+++|+.
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred cccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 33455566666532 22222 132 3455666666666666553 355566666666665 3344444323 24566666
Q ss_pred EEeeCccCCccC--cccCCCCCCcEEEeeCCCCcccc----hhHhhccCCceeccc
Q 043910 205 LILNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIP----TNVIHLSRLHSFCLS 254 (353)
Q Consensus 205 L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~----~~l~~l~~L~~L~l~ 254 (353)
|++++|+|..+- ..+..+++|+.|++.+|++..-+ ..+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 666666665332 23455666777777777665322 235567777777643
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.3e-10 Score=101.49 Aligned_cols=204 Identities=14% Similarity=0.164 Sum_probs=124.8
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCC-CCCccceEeecccCCCCCCC---CC-CCCCceEEEccCCCccccCC--CC
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSLPS---IT-HPAKLVLLEVPHSNIQQLGD--GG 99 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~---~~-~~~~L~~L~L~~~~i~~l~~--~~ 99 (353)
++++|+++.+.++....... -+.. .++.++.|+|+.|-+..+.. +. ++++|+.|+++.|++..... ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~-----~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGI-----EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hHHhhhheeecCccccccch-----hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 57778888888776532110 0111 23338888888877665442 22 67888888888887765432 22
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC--ccccCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP--SSIECLSR 177 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~l~~ 177 (353)
..+..++.|.++.|..- ..........+|+|+.|.+..|............+..|++|+|++|.+.+.+ ...++++.
T Consensus 194 ~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 35677888888887532 1111123456788888888886543333333444667888888888777555 45677788
Q ss_pred CCEEeccCCCCCc-ccCcc-----ccCCCCCCEEEeeCccCCccCc--ccCCCCCCcEEEeeCCCCc
Q 043910 178 LLHLGLRDCKRLK-SLPKG-----LCKLKSLKFLILNGCGITQLPE--NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 178 L~~L~l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l~ 236 (353)
|..|+++.|..-+ ..|+. ....++|++|++..|+|...+. .+..+++|+.|.+..|++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888887754322 12221 2457788888888887764432 3445567777777777764
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=4.6e-11 Score=109.07 Aligned_cols=190 Identities=21% Similarity=0.295 Sum_probs=141.1
Q ss_pred cceEeecccCCCCCCCCC-CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSIT-HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
-...+++.|++..+|.-+ .+..|+.+.++.|.+..++..+..+..|++++++.+.. ... +..++.++ |+.|-+++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~l--p~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHL--PDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcC--ChhhhcCc-ceeEEEec
Confidence 556777888888887433 56778888888888888888888888888888887642 112 12444444 78888887
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~ 218 (353)
+.++.+|..++....|..|+.+.|.+..+|+-++.+.+|+.|.+..| .+..+|+.+.. -.|..||++.|.+..+|..
T Consensus 153 -Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~-LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 153 -NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCS-LPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred -CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhC-CceeeeecccCceeecchh
Confidence 46677787788788888888888888888888888888888888874 45567766663 3478888888888888888
Q ss_pred cCCCCCCcEEEeeCCCCcccchhHh---hccCCceeccccc
Q 043910 219 LGQLFSLEEFCLRKTKFEKIPTNVI---HLSRLHSFCLSYC 256 (353)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~l~~~l~---~l~~L~~L~l~~~ 256 (353)
+.+|..|++|.|.+|.+.+-|..+. ..+-.++|+...|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888888888888888887666543 3344567777776
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=6.2e-11 Score=104.45 Aligned_cols=238 Identities=17% Similarity=0.138 Sum_probs=141.8
Q ss_pred CCCCceEEEccCC-Ccccc--CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc--cchhhhcC
Q 043910 78 HPAKLVLLEVPHS-NIQQL--GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR--LPAEILSA 152 (353)
Q Consensus 78 ~~~~L~~L~L~~~-~i~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~ 152 (353)
.+++|+.|++-.| .|+.. ......|++|++++++.|..+++-.......+++.++.+..++|...+. +-..-+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 3455555555542 23321 1123346666666666666555433223445555566665555543322 11111233
Q ss_pred CCccEEEccCcc-Ccc--cCccccCCCCCCEEeccCCCCCcccC--ccccCCCCCCEEEeeCcc-CC--ccCcccCCCCC
Q 043910 153 GNMEEMILNGTA-IEE--LPSSIECLSRLLHLGLRDCKRLKSLP--KGLCKLKSLKFLILNGCG-IT--QLPENLGQLFS 224 (353)
Q Consensus 153 ~~L~~L~l~~~~-i~~--l~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~-i~--~~~~~~~~l~~ 224 (353)
..+..+++..|. +++ +...-..+..|++++.++|..+++.+ .-..++++|+.+.+.+|+ ++ .+...-.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 445556655652 332 22223456788888888887766543 123567889999998884 44 22232346678
Q ss_pred CcEEEeeCCCCc---ccchhHhhccCCceeccccccccccC-----C---CCCCCcceeecCCCcCccccCccccccccc
Q 043910 225 LEEFCLRKTKFE---KIPTNVIHLSRLHSFCLSYCERLQSL-----P---KLPCNLKELDADHCAALESLSDLFSISYDY 293 (353)
Q Consensus 225 L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~~l~~l-----~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 293 (353)
|+.+++.++... ++.....+|+.|+.+.+++|..++.- . .....|..+.+++|+.+++...... ..|+
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~ 426 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICR 426 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCc
Confidence 888888887643 34444567888999999988766543 1 2335688888899988888765444 5788
Q ss_pred cccEEEecCCccCchHHHHhHHH
Q 043910 294 YIRCFELSTNYKLDRNELRSILE 316 (353)
Q Consensus 294 ~l~~l~~~~c~~l~~~~~~~~~~ 316 (353)
+|+.+++-+|.............
T Consensus 427 ~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred ccceeeeechhhhhhhhhHHHHh
Confidence 88999998987776665544433
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.79 E-value=2.4e-10 Score=98.64 Aligned_cols=233 Identities=18% Similarity=0.153 Sum_probs=137.6
Q ss_pred HHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC----CCCC--------CCCCCCceEEEccC
Q 043910 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK----SLPS--------ITHPAKLVLLEVPH 89 (353)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~----~l~~--------~~~~~~L~~L~L~~ 89 (353)
..+..+..+++|++++|.+...... ...+.+...+ |+..+|++.-.. .+|+ ...+++|++|+||+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~--~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAAR--AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHH--HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4455788899999999988543321 1222333333 778888765422 2331 22456899999998
Q ss_pred CCccc-----cCCCCcCCCCccEEecCCCcCcCCCC-----------CCccccCCccCcEEeecCCCCCc----ccchhh
Q 043910 90 SNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTP-----------NPSFIRSLNKLTILNLSGCSQLK----RLPAEI 149 (353)
Q Consensus 90 ~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~-----------~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~ 149 (353)
|.+.. +..-+.++..|++|.+.+|..-.... ...-...-++|+++...+|..-. .+...+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 87642 22334567888888888875321110 00123455677887777743221 122334
Q ss_pred hcCCCccEEEccCccCc--c---cCccccCCCCCCEEeccCCCCCc----ccCccccCCCCCCEEEeeCccCC-----cc
Q 043910 150 LSAGNMEEMILNGTAIE--E---LPSSIECLSRLLHLGLRDCKRLK----SLPKGLCKLKSLKFLILNGCGIT-----QL 215 (353)
Q Consensus 150 ~~~~~L~~L~l~~~~i~--~---l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~i~-----~~ 215 (353)
...+.|+.+.++.|.|. . +...+.++++|+.||+..|..-. .+...+..+++|+.+++++|.+. .+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 55677888888877665 1 23456677888888887754322 13345566777888888888765 12
Q ss_pred Cccc-CCCCCCcEEEeeCCCCc-----ccchhHhhccCCceecccccc
Q 043910 216 PENL-GQLFSLEEFCLRKTKFE-----KIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 216 ~~~~-~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~ 257 (353)
...+ ...++|+.|.+.+|.++ .+...+...+.|..|++++|+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1111 23567888888888765 122234556677777777764
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=8.5e-09 Score=103.08 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=59.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCC--ccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSN--IQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~--i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
.+.+.+.++.+..++.....++|+.|-+..|. +..++.. +..++.|+.||+++|..+...| ..++.+-+|++|++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGELVHLRYLDL 602 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hHHhhhhhhhcccc
Confidence 45555555555544444444455555555443 3333222 2335555555555554443332 34555555555555
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccC
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~ 185 (353)
++ ..+..+|..+.++..|.+|++..+... .+|.....+.+|++|.+..
T Consensus 603 ~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 603 SD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 55 334455555555555555555554332 2222333355555555543
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=2.8e-08 Score=96.91 Aligned_cols=87 Identities=28% Similarity=0.401 Sum_probs=45.6
Q ss_pred CCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccc
Q 043910 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 178 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~ 255 (353)
++.|++++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555554444445555555555555555555554 44544555555555555555554 4555555555555555555
Q ss_pred ccccccCCC
Q 043910 256 CERLQSLPK 264 (353)
Q Consensus 256 ~~~l~~l~~ 264 (353)
|.....+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 544444443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.72 E-value=5.3e-09 Score=90.48 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=105.2
Q ss_pred cccCCccCcEEeecCCCCCcccch----hhhcCCCccEEEccCccCccc--------------CccccCCCCCCEEeccC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPA----EILSAGNMEEMILNGTAIEEL--------------PSSIECLSRLLHLGLRD 185 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~i~~l--------------~~~~~~l~~L~~L~l~~ 185 (353)
++..+++|++|+||+|.+-...+. -+.++..|++|++.+|.+... ......-++|+++..+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 445566777777777655433322 234567777777777765411 11233446777777776
Q ss_pred CCCCcccC-----ccccCCCCCCEEEeeCccCC-----ccCcccCCCCCCcEEEeeCCCCc-----ccchhHhhccCCce
Q 043910 186 CKRLKSLP-----KGLCKLKSLKFLILNGCGIT-----QLPENLGQLFSLEEFCLRKTKFE-----KIPTNVIHLSRLHS 250 (353)
Q Consensus 186 ~~~~~~l~-----~~~~~l~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~ 250 (353)
| .+..-+ ..++..+.|+.+.+..|.|. .+...+.++++|+.||++.|.++ .+...+..+++|+.
T Consensus 167 N-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 N-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred c-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 4 344332 34566677888888877764 12345677888888888888775 23445566777888
Q ss_pred ecccccccc--------ccCCCCCCCcceeecCCCcCccccCccccc---cccccccEEEecCC
Q 043910 251 FCLSYCERL--------QSLPKLPCNLKELDADHCAALESLSDLFSI---SYDYYIRCFELSTN 303 (353)
Q Consensus 251 L~l~~~~~l--------~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~l~~l~~~~c 303 (353)
++++.|..- ..+....++|+.|.+.+|. ++.-...... ...+.|..|++.+|
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 888777421 2233345677777777763 3322221111 12455677777777
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.70 E-value=9.7e-08 Score=86.35 Aligned_cols=161 Identities=19% Similarity=0.305 Sum_probs=89.2
Q ss_pred cCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc-cCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 126 RSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT-AIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
..+.++++|++++| .+..+|. -..+|+.|.+++| .++.+|..+ .++|++|++++|..+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 34577788888876 5555552 2346888888775 455555443 25778888887766665554 3566
Q ss_pred EEeeCccCC---ccCcccCCCCCCcEEEeeCCC-Cc--ccchhHhhccCCceeccccccccccCCCCCCCcceeecCCCc
Q 043910 205 LILNGCGIT---QLPENLGQLFSLEEFCLRKTK-FE--KIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCA 278 (353)
Q Consensus 205 L~l~~~~i~---~~~~~~~~l~~L~~L~l~~~~-l~--~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~ 278 (353)
|++..+... .+|. +|+.|.+.+++ .. .++.. -.++|+.|++++|..+...+..+.+|+.|+++.+.
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 666554432 3333 45666664322 11 11110 12468888888877554222355678888876532
Q ss_pred Cc-cccCccccccccccccEEEecCCccCchHH
Q 043910 279 AL-ESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 279 ~l-~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
.. ..++... .+.++ .+.+.+|.++....
T Consensus 189 ~~sLeI~~~s---LP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 189 KTTWNISFEG---FPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred cccccCcccc---ccccc-EechhhhcccCHHH
Confidence 11 1111111 12445 67788887665543
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=3.3e-10 Score=99.95 Aligned_cols=214 Identities=20% Similarity=0.209 Sum_probs=121.4
Q ss_pred CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc--cchhhhcCCCccEEEccCccCc---ccCccccCC
Q 043910 101 HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR--LPAEILSAGNMEEMILNGTAIE---ELPSSIECL 175 (353)
Q Consensus 101 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~---~l~~~~~~l 175 (353)
.|++++.+++..|..+|+..-......|++|++|+++.|..+.. +..-..++.+++.+..+||.-. .+...-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 34555555555544444322111223445555555555544332 1111223344444444444111 111111233
Q ss_pred CCCCEEeccCCCCCcccC--ccccCCCCCCEEEeeCcc-CC--ccCcccCCCCCCcEEEeeCCC-Cc--ccchhHhhccC
Q 043910 176 SRLLHLGLRDCKRLKSLP--KGLCKLKSLKFLILNGCG-IT--QLPENLGQLFSLEEFCLRKTK-FE--KIPTNVIHLSR 247 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~-l~--~l~~~l~~l~~ 247 (353)
.-+..+++..|..+++.. ..-..+..|+.++.++|. ++ .+..-..++.+|+.+-+.+|+ ++ .+...-.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 445555665665555432 122357778888888773 33 222334677899999999986 33 22223347889
Q ss_pred Cceecccccccc-----ccCCCCCCCcceeecCCCcCccccCccccc---cccccccEEEecCCccCchHHHHhH
Q 043910 248 LHSFCLSYCERL-----QSLPKLPCNLKELDADHCAALESLSDLFSI---SYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 248 L~~L~l~~~~~l-----~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
|+.+++.+|... .++...++.|+.+.+++|..+++.+..... -....+..+++.+||.+.+...+..
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 999999887543 234456789999999999999988433222 2346678899999999999877654
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=7e-08 Score=94.22 Aligned_cols=110 Identities=24% Similarity=0.338 Sum_probs=92.6
Q ss_pred CccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEee
Q 043910 154 NMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLR 231 (353)
Q Consensus 154 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~ 231 (353)
.++.|+|++|.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778999999888 78888999999999999997766788888899999999999999988 688889999999999999
Q ss_pred CCCCc-ccchhHhhc-cCCceeccccccccccCC
Q 043910 232 KTKFE-KIPTNVIHL-SRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 232 ~~~l~-~l~~~l~~l-~~L~~L~l~~~~~l~~l~ 263 (353)
+|.+. .+|..+... .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99988 888877653 467788888887665544
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.5e-10 Score=93.13 Aligned_cols=173 Identities=18% Similarity=0.144 Sum_probs=68.8
Q ss_pred ceEEEccCCCccc--cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch--hhhcCCCccE
Q 043910 82 LVLLEVPHSNIQQ--LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA--EILSAGNMEE 157 (353)
Q Consensus 82 L~~L~L~~~~i~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~ 157 (353)
||.+||++..|+. +......|.+|+.|.+.+... . .+....++.-.+|+.|+++.|+..++... -+.+++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-d-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-D-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-C-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5555555554432 222233444555554444321 1 01111344444555555555544443221 1234455555
Q ss_pred EEccCccCc--ccCccccC-CCCCCEEeccCCCCCc---ccCccccCCCCCCEEEeeCcc-CC-ccCcccCCCCCCcEEE
Q 043910 158 MILNGTAIE--ELPSSIEC-LSRLLHLGLRDCKRLK---SLPKGLCKLKSLKFLILNGCG-IT-QLPENLGQLFSLEEFC 229 (353)
Q Consensus 158 L~l~~~~i~--~l~~~~~~-l~~L~~L~l~~~~~~~---~l~~~~~~l~~L~~L~l~~~~-i~-~~~~~~~~l~~L~~L~ 229 (353)
|+++.|... .+...+.+ -++|+.|+++||...- .+..-..++++|..||++.|. ++ .....+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 555555333 11111111 1344445555443211 111112345555555555442 22 2223344444555555
Q ss_pred eeCCCCc--ccchhHhhccCCceeccccc
Q 043910 230 LRKTKFE--KIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 230 l~~~~l~--~l~~~l~~l~~L~~L~l~~~ 256 (353)
++.|+.- ...-.+...|+|.+|++.+|
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5555421 11112334455555555554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=1e-08 Score=95.56 Aligned_cols=168 Identities=23% Similarity=0.311 Sum_probs=74.3
Q ss_pred cceEeecccCCCCCCC-CCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
++.+++.+|.++.+.. ...+++|+.|++++|.|..+.. ...++.|+.|++++|. +.....+..++.|+.+++++
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~----i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL----ISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc----chhccCCccchhhhcccCCc
Confidence 5555555555555554 4445555555555555554432 2333445555555542 11222333355555555555
Q ss_pred CCCCcccchh-hhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCC--CCCEEEeeCccCCcc
Q 043910 139 CSQLKRLPAE-ILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLK--SLKFLILNGCGITQL 215 (353)
Q Consensus 139 ~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~i~~~ 215 (353)
|.. ..+... ...+.+++.+.+.+|.+..+. .+..+..+..+++..+ .+..+.. +..+. +|+.+++.++++...
T Consensus 172 n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n-~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRI-VDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDN-KISKLEG-LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chh-hhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccc-cceeccC-cccchhHHHHHHhcccCccccc
Confidence 322 222211 234445555555555444332 1222222222233331 1221111 11222 255566666655555
Q ss_pred CcccCCCCCCcEEEeeCCCCc
Q 043910 216 PENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~l~ 236 (353)
+..+..+..+..|++.++.+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccccccccccccchhhcccc
Confidence 444555555566665555543
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=1.8e-07 Score=61.89 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=12.8
Q ss_pred ccEEEccCccCcccCc-cccCCCCCCEEeccC
Q 043910 155 MEEMILNGTAIEELPS-SIECLSRLLHLGLRD 185 (353)
Q Consensus 155 L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~ 185 (353)
|++|++++|.++.+|+ .+..+++|++|++++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSN 34 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccC
Confidence 4444444444444432 333344444444443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=3.1e-08 Score=92.29 Aligned_cols=188 Identities=21% Similarity=0.252 Sum_probs=127.2
Q ss_pred cceEeecccCCCCCC-CCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
++.+.++.+.++.+. ....+++|+.+++.+|.|..+......+++|++|+++++. ++ ....+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~---~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-IT---KLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cc---cccchhhccchhhheecc
Confidence 666667777766633 3556788888999988888876656778888888888863 33 334566677788888888
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
| .+..+.. +..+..|+.+++++|.++.+... ...+.+++.+.+.+|. +..+. .+..+..+..+++..|.++.+-.
T Consensus 150 N-~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~-~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 150 N-LISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIE-GLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred C-cchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhccc-chHHHHHHHHhhcccccceeccC
Confidence 5 4444432 44578888888888888876543 4677788888888743 33332 23334444555677776664422
Q ss_pred ccCCCCC--CcEEEeeCCCCcccchhHhhccCCceeccccc
Q 043910 218 NLGQLFS--LEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 218 ~~~~l~~--L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
+..... |+.+.+++|++..++..+..+..+..+++..+
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred -cccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 222333 88999999998876556677788888888774
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=4e-07 Score=60.21 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCC
Q 043910 176 SRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTK 234 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~ 234 (353)
++|++|++++| .++.+| ..|..+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666664 455555 355666666666666666665543 45666666666666664
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=3.7e-06 Score=76.24 Aligned_cols=132 Identities=25% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+.++..|++++|.++.+|. ...+|+.|.+.+|..++..+. .+ .++|++|++++|..+..+|. .|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccccccc------ccceE
Confidence 4567777777776666652 234577777777766654432 11 24677777777755555553 46666
Q ss_pred EccCccCc---ccCccccCCCCCCEEeccCCCCCc--ccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCC
Q 043910 159 ILNGTAIE---ELPSSIECLSRLLHLGLRDCKRLK--SLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKT 233 (353)
Q Consensus 159 ~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~ 233 (353)
.+.++... .+|+ +|+.|.+.+++... .+|. .-.++|++|++++|....+|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 66655433 3333 34555554322111 1111 112467777777776554444332 46777777655
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.9e-09 Score=87.36 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=126.0
Q ss_pred ccCcEEeecCCCCCc-ccchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcccC--ccccCCCCCCE
Q 043910 129 NKLTILNLSGCSQLK-RLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLP--KGLCKLKSLKF 204 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~ 204 (353)
..|++|+++...... .+-.-+..|.+|+.|.+.|+.+. .+-..+..-.+|+.++++.|+.++... -.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 369999999843322 22333567899999999999888 565667778899999999999888654 24678999999
Q ss_pred EEeeCccCC--ccCcccCCC-CCCcEEEeeCCC--Cc--ccchhHhhccCCceeccccccccccC--C--CCCCCcceee
Q 043910 205 LILNGCGIT--QLPENLGQL-FSLEEFCLRKTK--FE--KIPTNVIHLSRLHSFCLSYCERLQSL--P--KLPCNLKELD 273 (353)
Q Consensus 205 L~l~~~~i~--~~~~~~~~l-~~L~~L~l~~~~--l~--~l~~~l~~l~~L~~L~l~~~~~l~~l--~--~~~~~L~~L~ 273 (353)
|+++.|... .+...+.+. ++|..|+++|+. +. .+......|++|.+||++.|..++.- . --++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999765 222233333 478999999985 22 34445678999999999998777551 1 1357899999
Q ss_pred cCCCcCccccCccccccccccccEEEecCCc
Q 043910 274 ADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 274 l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
++.|-.+..-....+ ...+.+.+|++-+|-
T Consensus 345 lsRCY~i~p~~~~~l-~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLEL-NSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeee-ccCcceEEEEecccc
Confidence 999976654433222 345678899998883
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.5e-08 Score=93.12 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=35.5
Q ss_pred hhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCcc-ccCCCCCCEEEeeCccCCccCcccCCCCCCc
Q 043910 148 EILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQLFSLE 226 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~ 226 (353)
++.-++.++.|+|++|+++.+. .+..+++|++||+++ +.+..+|.. ...+. |..|.+.+|.++.+- ++.++.+|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhh
Confidence 3334444444455544444432 344444445555544 233433321 11222 444444444444332 234444444
Q ss_pred EEEeeCCCC
Q 043910 227 EFCLRKTKF 235 (353)
Q Consensus 227 ~L~l~~~~l 235 (353)
.||+++|-+
T Consensus 258 ~LDlsyNll 266 (1096)
T KOG1859|consen 258 GLDLSYNLL 266 (1096)
T ss_pred ccchhHhhh
Confidence 444444443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=7.6e-08 Score=90.89 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeC
Q 043910 153 GNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRK 232 (353)
Q Consensus 153 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~ 232 (353)
.+|...+.++|.++.+..++.-++.++.|+++.|+ ..... .+..|++|++||+++|.+..+|..-..-..|..|.+++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 45667777777777666677777788888888754 33333 46677888888888888777776333223488888888
Q ss_pred CCCcccchhHhhccCCceeccccc
Q 043910 233 TKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 233 ~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
|.++++-. +.++.+|..||++.|
T Consensus 242 N~l~tL~g-ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 242 NALTTLRG-IENLKSLYGLDLSYN 264 (1096)
T ss_pred cHHHhhhh-HHhhhhhhccchhHh
Confidence 88776644 667778888888774
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=4.2e-06 Score=50.94 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccc
Q 043910 201 SLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIP 239 (353)
Q Consensus 201 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~ 239 (353)
+|++|++++|+|+.+|..++.+++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666555566666666666666655443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=2.9e-07 Score=78.37 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred eEeecccCCCCCCCCC----CCCCceEEEccCCCccccCC---CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEE
Q 043910 62 YLFWHGYPLKSLPSIT----HPAKLVLLEVPHSNIQQLGD---GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134 (353)
Q Consensus 62 ~L~l~~~~~~~l~~~~----~~~~L~~L~L~~~~i~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 134 (353)
-+.+.++.+....... ..+.++.+||.+|.|+.+.+ ...++|.|+.|++++|..-..+...+ .-..+|++|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~l 126 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVL 126 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEE
Confidence 4444455444333211 34666777777777665432 34466777777777654322222221 234566676
Q ss_pred eecCCCCCc-ccchhhhcCCCccEEEccCccCcccC---ccccCC-CCCCEEeccCCCCCccc--CccccCCCCCCEEEe
Q 043910 135 NLSGCSQLK-RLPAEILSAGNMEEMILNGTAIEELP---SSIECL-SRLLHLGLRDCKRLKSL--PKGLCKLKSLKFLIL 207 (353)
Q Consensus 135 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~---~~~~~l-~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l 207 (353)
-+.+..... .....+..++.+++|+++.|....+- ..+... +.++++++..|....-. -.--..++++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 666533221 12223345566666666666433210 011111 23444555444321100 000123456677777
Q ss_pred eCccCCccC--cccCCCCCCcEEEeeCCCCcccc--hhHhhccCCceeccccccccccCC
Q 043910 208 NGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIP--TNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 208 ~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
..|.+.... ......+.+--|+++.+++.++. +.+.++++|+.|.+.+++....+.
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 777766332 23445566777888888887554 367788888888888877665554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=7.6e-07 Score=67.24 Aligned_cols=89 Identities=15% Similarity=0.259 Sum_probs=45.7
Q ss_pred cCCCccEEEccCccCcccCcccc-CCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 151 SAGNMEEMILNGTAIEELPSSIE-CLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
...+|+..++++|.+..+|+.+. ..+.++++++++ +.++++|..+..++.|+.+++..|.+...|+.+..+.++..|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 33445555555555555554433 223455555554 3455555545555555555555555555555444455555555
Q ss_pred eeCCCCcccch
Q 043910 230 LRKTKFEKIPT 240 (353)
Q Consensus 230 l~~~~l~~l~~ 240 (353)
..+|....++.
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 55555444443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=8.2e-06 Score=79.96 Aligned_cols=150 Identities=20% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCC-cccchhhhcCCCccEEEccCccCcccCccccCCCCCCE
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQL-KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 180 (353)
-.+|+.|++++...+...-...--..+|.|+.|.+.+-... .++.....++++|+.|++++++++.+ ..++.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35777788877543321100112345788888888773332 22333345678888888888888877 56777888888
Q ss_pred EeccCCCCCcccC--ccccCCCCCCEEEeeCccCCccC-------cccCCCCCCcEEEeeCCCCc-ccch-hHhhccCCc
Q 043910 181 LGLRDCKRLKSLP--KGLCKLKSLKFLILNGCGITQLP-------ENLGQLFSLEEFCLRKTKFE-KIPT-NVIHLSRLH 249 (353)
Q Consensus 181 L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~-------~~~~~l~~L~~L~l~~~~l~-~l~~-~l~~l~~L~ 249 (353)
|.+.+-. ...-. ..+.++++|+.||++.......+ +....++.|+.||.+++.+. .+.. .+..-++|+
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 8776522 22211 13567888888888876433222 11234678888888887765 3322 233344455
Q ss_pred eecc
Q 043910 250 SFCL 253 (353)
Q Consensus 250 ~L~l 253 (353)
.+.+
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 4443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.8e-05 Score=47.27 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=12.5
Q ss_pred ccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 155 MEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 155 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
|++|++++|.|+.+|+.+..+++|++|++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 4444444444444443344444444444444
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.7e-06 Score=65.46 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=81.9
Q ss_pred CccEEEccCccCcccCcc---ccCCCCCCEEeccCCCCCcccCcccc-CCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 154 NMEEMILNGTAIEELPSS---IECLSRLLHLGLRDCKRLKSLPKGLC-KLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 154 ~L~~L~l~~~~i~~l~~~---~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
.+..++++.|.+-.++.. +.....|+..++++ +.+..+|+.|. ..+.++.+++++|.++.+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 456677888876655544 34456677789998 56777887554 56789999999999999999999999999999
Q ss_pred eeCCCCcccchhHhhccCCceeccccc
Q 043910 230 LRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 230 l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
++.|.+...|.-+..+.++-.|+..++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC
Confidence 999999988887777888888887764
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.72 E-value=6.6e-06 Score=78.29 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=51.2
Q ss_pred CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC-CCCcccc----hhhhcCCCccEEEccCcc-Ccc--cCcccc
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC-SQLKRLP----AEILSAGNMEEMILNGTA-IEE--LPSSIE 173 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~-i~~--l~~~~~ 173 (353)
++.|+.+.+..|..++.....+....++.|+.|++++| ......+ .....+.+|+.++++++. +++ +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666666555443221234455566666666552 2222111 112234556666666654 442 211122
Q ss_pred CCCCCCEEeccCCCCCcc--cCccccCCCCCCEEEeeCcc
Q 043910 174 CLSRLLHLGLRDCKRLKS--LPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~ 211 (353)
.+++|++|.+.+|..++. +-.....+++|+.|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 355666666555554332 11223445556666666553
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.8e-05 Score=77.58 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=79.3
Q ss_pred ccCcEEeecCCCC-Ccccchhhh-cCCCccEEEccCccCc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 129 NKLTILNLSGCSQ-LKRLPAEIL-SAGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 129 ~~L~~L~l~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
.+|++|++++... ....+..++ -+|.|+.|.+.+-.+. ++.....++++|..||+++++ ++.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 4788888877432 233444444 3688888888876554 344455677888888888744 4444 35677888888
Q ss_pred EEeeCccCCccC--cccCCCCCCcEEEeeCCCCcccchh-------HhhccCCceeccccc
Q 043910 205 LILNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPTN-------VIHLSRLHSFCLSYC 256 (353)
Q Consensus 205 L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~~-------l~~l~~L~~L~l~~~ 256 (353)
|.+.+-.+.... ..+..+++|+.||+|.......+.. -..+|.|+.||.++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 877665555322 2356678888888887654422211 124777888887763
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00012 Score=59.33 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=46.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcC-CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQH-HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
...+++++|.+..++.+..++.|..|.+.+|+|..+.+.+.. +++|..|.+.+|+ +....+...+..|++|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecC
Confidence 555666666666666666666777777777777666544433 4556666666543 33344444455555666665555
Q ss_pred C
Q 043910 139 C 139 (353)
Q Consensus 139 ~ 139 (353)
|
T Consensus 123 N 123 (233)
T KOG1644|consen 123 N 123 (233)
T ss_pred C
Confidence 4
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.60 E-value=6.2e-05 Score=63.66 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=77.2
Q ss_pred cccCCccCcEEeecCCCCCcccchh----hhcCCCccEEEccCccCcccC-----c---------cccCCCCCCEEeccC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAE----ILSAGNMEEMILNGTAIEELP-----S---------SIECLSRLLHLGLRD 185 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~i~~l~-----~---------~~~~l~~L~~L~l~~ 185 (353)
++.+|++|+..++|+|.+....|.. +...+.|.+|.+++|.+..+. . -...-|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 5567777888888877665555433 345677788888777654221 1 123346677777766
Q ss_pred CCCCcccCc-----cccCCCCCCEEEeeCccCC--ccC----cccCCCCCCcEEEeeCCCCcc-----cchhHhhccCCc
Q 043910 186 CKRLKSLPK-----GLCKLKSLKFLILNGCGIT--QLP----ENLGQLFSLEEFCLRKTKFEK-----IPTNVIHLSRLH 249 (353)
Q Consensus 186 ~~~~~~l~~-----~~~~l~~L~~L~l~~~~i~--~~~----~~~~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~ 249 (353)
| .+...+. .+..-..|+.+.+..|.|. ++. ..+..+.+|+.||++.|.++. +...+...+.|+
T Consensus 167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 N-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred c-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 3 3333331 2333356777777777765 111 134566778888888777651 222334455567
Q ss_pred eeccccc
Q 043910 250 SFCLSYC 256 (353)
Q Consensus 250 ~L~l~~~ 256 (353)
.|.+..|
T Consensus 246 EL~lnDC 252 (388)
T COG5238 246 ELRLNDC 252 (388)
T ss_pred hccccch
Confidence 7776665
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00034 Score=56.70 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCccEEEccCccCcccCccccC-CCCCCEEeccCCCCCcccCc--cccCCCCCCEEEeeCccCCccCc----ccCCCCC
Q 043910 152 AGNMEEMILNGTAIEELPSSIEC-LSRLLHLGLRDCKRLKSLPK--GLCKLKSLKFLILNGCGITQLPE----NLGQLFS 224 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~~~~~----~~~~l~~ 224 (353)
++.|.+|.+..|+|+.+.+.+.. +++|+.|.+.+|. +..+.+ -+..+++|++|.+-+|++..-+. .+-.+++
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 34444444444444443333322 2344444444422 222211 13344444444444444432211 1233445
Q ss_pred CcEEEeeC
Q 043910 225 LEEFCLRK 232 (353)
Q Consensus 225 L~~L~l~~ 232 (353)
|+.||+++
T Consensus 142 l~~LDF~k 149 (233)
T KOG1644|consen 142 LRTLDFQK 149 (233)
T ss_pred ceEeehhh
Confidence 55555443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.31 E-value=3.5e-05 Score=73.34 Aligned_cols=180 Identities=25% Similarity=0.236 Sum_probs=105.9
Q ss_pred cCCccCcEEeecCCCCCcc--cchhhhcCCCccEEEccCc--cCccc----CccccCCCCCCEEeccCCCCCcccC--cc
Q 043910 126 RSLNKLTILNLSGCSQLKR--LPAEILSAGNMEEMILNGT--AIEEL----PSSIECLSRLLHLGLRDCKRLKSLP--KG 195 (353)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~i~~l----~~~~~~l~~L~~L~l~~~~~~~~l~--~~ 195 (353)
..++.|+.|.+.+|..+.. +......+++|+.|+++++ .++.. ......+++|+.+++++|..+++.. ..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888888877665 3344567889999999873 22221 1234456889999999877555432 22
Q ss_pred ccCCCCCCEEEeeCcc-CC--ccCcccCCCCCCcEEEeeCCCCc---ccchhHhhccCCceeccccc---cccccCC---
Q 043910 196 LCKLKSLKFLILNGCG-IT--QLPENLGQLFSLEEFCLRKTKFE---KIPTNVIHLSRLHSFCLSYC---ERLQSLP--- 263 (353)
Q Consensus 196 ~~~l~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~---~~l~~l~--- 263 (353)
...+++|+.|.+.+|. ++ .+-.....++.|++|++++|... .+.....++++|+.+.+..+ ..++...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 2348899999988886 55 44445567788999999988753 24444556776666554433 2232211
Q ss_pred --CCC-CCcceeecCCCcCccccCccccccccccccEEEecCCccC
Q 043910 264 --KLP-CNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKL 306 (353)
Q Consensus 264 --~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l 306 (353)
... ..+..+.+.+|+.++++...... .......+.+.+|+.+
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 111 14555555555555555444333 1111113445555555
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00014 Score=62.35 Aligned_cols=204 Identities=18% Similarity=0.162 Sum_probs=125.9
Q ss_pred CceEEEccCCCccccCC---CCcCCCCccEEecCCCcCcCCCCC-CccccCCccCcEEeecCCCCCcccchhhhcCCCcc
Q 043910 81 KLVLLEVPHSNIQQLGD---GGQHHCKLSQIITAARNFVTKTPN-PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME 156 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 156 (353)
.++.+.+.++.|....+ ....+..++.+++.+|.. .++.. .....++|.|+.|+++.|.....+........+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i-SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI-SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh-ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 45566666766654322 123467889999998742 22221 22567899999999998755444332224567899
Q ss_pred EEEccCccCc--ccCccccCCCCCCEEeccCCCCCccc---CccccCC-CCCCEEEeeCccCC---ccCcccCCCCCCcE
Q 043910 157 EMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSL---PKGLCKL-KSLKFLILNGCGIT---QLPENLGQLFSLEE 227 (353)
Q Consensus 157 ~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~l-~~L~~L~l~~~~i~---~~~~~~~~l~~L~~ 227 (353)
.|.+.|+.+. ........+|.++.|+++.|+ .+.+ .+..... +.++++....|... .+-......+++..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 9999998665 555567788889999888853 2211 1112222 24566666666432 11122234567888
Q ss_pred EEeeCCCCcccch--hHhhccCCceeccccccccccCC-----CCCCCcceeecCCCcCccccCccc
Q 043910 228 FCLRKTKFEKIPT--NVIHLSRLHSFCLSYCERLQSLP-----KLPCNLKELDADHCAALESLSDLF 287 (353)
Q Consensus 228 L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~l~~l~-----~~~~~L~~L~l~~c~~l~~~~~~~ 287 (353)
+-+..|++.+... ....++.+..|+++.+ .+.++. ..++.|..|.+.+.|-...+....
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCc
Confidence 8888898874433 3345677777777774 333322 246888999999888777776643
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00069 Score=57.14 Aligned_cols=79 Identities=25% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCCCEEeccCC--CCCcccCccccCCCCCCEEEeeCccCCc---cCcccCCCCCCcEEEeeCCCCcccc----hhHhh
Q 043910 174 CLSRLLHLGLRDC--KRLKSLPKGLCKLKSLKFLILNGCGITQ---LPENLGQLFSLEEFCLRKTKFEKIP----TNVIH 244 (353)
Q Consensus 174 ~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~L~l~~~~l~~l~----~~l~~ 244 (353)
.+++|++|.++.| .....++.....+++|+++++++|++.. ++ .+..+.+|..|++.+|..+.+- ..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3445555555544 1122222222334555555555554431 11 1333445555555555543221 12334
Q ss_pred ccCCceecc
Q 043910 245 LSRLHSFCL 253 (353)
Q Consensus 245 l~~L~~L~l 253 (353)
+++|++||-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 555555543
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.81 E-value=0.00093 Score=56.75 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=25.9
Q ss_pred HHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC
Q 043910 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL 73 (353)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l 73 (353)
.++.+|++|+.+++++|.|....+... ...+.... |.+|.+++|.+..+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L--~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEEL--GDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHH--HHHHhcCCCceeEEeecCCCCcc
Confidence 455577777777777777654332111 11111122 77777777765533
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00012 Score=62.23 Aligned_cols=98 Identities=23% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc--ccCCCCCCcEEE
Q 043910 152 AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE--NLGQLFSLEEFC 229 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~ 229 (353)
+.+.+.|+.-||.+.++. ....|+.|++|.|+-| .++.+.. +..|++|++|.+-.|.|..+.+ .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 345666777777777662 3456777777777763 3444432 5667777777777776665543 345666777777
Q ss_pred eeCCCCc-cc-c----hhHhhccCCceec
Q 043910 230 LRKTKFE-KI-P----TNVIHLSRLHSFC 252 (353)
Q Consensus 230 l~~~~l~-~l-~----~~l~~l~~L~~L~ 252 (353)
|..|+-. .- + ..+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7766543 11 1 1244566666665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0014 Score=55.30 Aligned_cols=61 Identities=30% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCccCcEEeecCC--CCCcccchhhhcCCCccEEEccCccCcccC--ccccCCCCCCEEeccCCC
Q 043910 127 SLNKLTILNLSGC--SQLKRLPAEILSAGNMEEMILNGTAIEELP--SSIECLSRLLHLGLRDCK 187 (353)
Q Consensus 127 ~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~ 187 (353)
.+++|++|.++.| .....++.....+++|+++++++|+|..+. .....+.+|..|++..|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4556666666665 233333333334466666666666555321 123344555566666554
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.47 E-value=0.016 Score=44.29 Aligned_cols=81 Identities=10% Similarity=0.212 Sum_probs=28.9
Q ss_pred cccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLK 200 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~ 200 (353)
.+..+.+|+.+.+.. ....++ ..+..+++|+.+.+.++ +..++. .+..+++++.+.+.. ....++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 344445555555543 122222 22444445555555443 333322 334444555555543 2222222 334455
Q ss_pred CCCEEEeeC
Q 043910 201 SLKFLILNG 209 (353)
Q Consensus 201 ~L~~L~l~~ 209 (353)
+|+.+.+..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 555555543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00022 Score=60.67 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=39.3
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc--cccCCCCCCEE
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLHL 181 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L 181 (353)
+.++|+..+| ++.+......|+.|++|.|+-|++.+ +.. +..|++|++|+|..|.|..+.. .+.++++|+.|
T Consensus 20 ~vkKLNcwg~----~L~DIsic~kMp~lEVLsLSvNkIss-L~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGC----GLDDISICEKMPLLEVLSLSVNKISS-LAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCC----CccHHHHHHhcccceeEEeecccccc-chh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3444555554 22223334455556666665543322 211 4455566666666665554322 34455666666
Q ss_pred eccCCCCCc
Q 043910 182 GLRDCKRLK 190 (353)
Q Consensus 182 ~l~~~~~~~ 190 (353)
-|..|.-..
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 665544433
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.91 E-value=0.038 Score=42.10 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=10.1
Q ss_pred cCHHHHhcCCCCcEEEeee
Q 043910 20 LYSDTFTKMRKLRFLKFYN 38 (353)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~ 38 (353)
+...+|.++++|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~ 21 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN 21 (129)
T ss_dssp E-TTTTTT-TT--EEEETS
T ss_pred ECHHHHhCCCCCCEEEECC
Confidence 3456677777777777764
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0067 Score=30.60 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=8.4
Q ss_pred ccEEEccCccCcccCcc
Q 043910 155 MEEMILNGTAIEELPSS 171 (353)
Q Consensus 155 L~~L~l~~~~i~~l~~~ 171 (353)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555555544444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.014 Score=29.42 Aligned_cols=14 Identities=36% Similarity=0.774 Sum_probs=5.4
Q ss_pred CEEEeeCccCCccC
Q 043910 203 KFLILNGCGITQLP 216 (353)
Q Consensus 203 ~~L~l~~~~i~~~~ 216 (353)
++|++++|+++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33344433333333
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.011 Score=48.08 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=57.0
Q ss_pred CCCcEEEeeCCCCc-ccchhHhhccCCceeccccccccc-----cCCCCCCCcceeecCCCcCccccCcccccccccccc
Q 043910 223 FSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQ-----SLPKLPCNLKELDADHCAALESLSDLFSISYDYYIR 296 (353)
Q Consensus 223 ~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~-----~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~ 296 (353)
..++.+|.+++.+. .--..+.++++++.|.+.+|..+. .+....++|+.|+|++|+.+++-..... ...++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhH
Confidence 35788888888776 444557778888888888887653 3444568899999999998888765433 2345666
Q ss_pred EEEecCCccC
Q 043910 297 CFELSTNYKL 306 (353)
Q Consensus 297 ~l~~~~c~~l 306 (353)
.|.+.+=+-.
T Consensus 180 ~L~l~~l~~v 189 (221)
T KOG3864|consen 180 RLHLYDLPYV 189 (221)
T ss_pred HHHhcCchhh
Confidence 6666554433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.00 E-value=0.039 Score=25.79 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=4.9
Q ss_pred CccEEEccCccCcc
Q 043910 154 NMEEMILNGTAIEE 167 (353)
Q Consensus 154 ~L~~L~l~~~~i~~ 167 (353)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.86 E-value=0.1 Score=27.37 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=15.6
Q ss_pred cccccEEEecCCccCchHHHHhHH
Q 043910 292 DYYIRCFELSTNYKLDRNELRSIL 315 (353)
Q Consensus 292 ~~~l~~l~~~~c~~l~~~~~~~~~ 315 (353)
|++|+.|++++|+.+++.....+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345667777777777776665543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.08 E-value=0.36 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=9.6
Q ss_pred CCCcEEEeeCCCCcccch
Q 043910 223 FSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 223 ~~L~~L~l~~~~l~~l~~ 240 (353)
++|+.|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.08 E-value=0.36 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=9.6
Q ss_pred CCCcEEEeeCCCCcccch
Q 043910 223 FSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 223 ~~L~~L~l~~~~l~~l~~ 240 (353)
++|+.|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.74 E-value=0.015 Score=48.55 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=56.7
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK 203 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 203 (353)
.+..+...+.|+++.| ........+..++.+..|+++.|.+..+|..++....++.+++.. +..+..|.++++.++++
T Consensus 37 ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence 4555666777777763 333344445556667777777777777777666666666666655 44666776777777777
Q ss_pred EEEeeCccCC
Q 043910 204 FLILNGCGIT 213 (353)
Q Consensus 204 ~L~l~~~~i~ 213 (353)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777766543
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.82 E-value=0.0088 Score=56.48 Aligned_cols=177 Identities=20% Similarity=0.206 Sum_probs=101.0
Q ss_pred cceEeecccCCCCCC------CCCCCCCceEEEccCCCcccc-----CCCCcCC-CCccEEecCCCcCcCCCC--CCccc
Q 043910 60 IRYLFWHGYPLKSLP------SITHPAKLVLLEVPHSNIQQL-----GDGGQHH-CKLSQIITAARNFVTKTP--NPSFI 125 (353)
Q Consensus 60 L~~L~l~~~~~~~l~------~~~~~~~L~~L~L~~~~i~~l-----~~~~~~~-~~L~~L~l~~~~~l~~~~--~~~~~ 125 (353)
+..+.+.+|.+..-. .......|+.|++++|.+... ....... +.++.|++..|....... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666777655322 122467788888888877521 1233333 556667777764322111 01134
Q ss_pred cCCccCcEEeecCCCCCcc----cchhhh----cCCCccEEEccCccCcc-----cCccccCCCC-CCEEeccCCCCCcc
Q 043910 126 RSLNKLTILNLSGCSQLKR----LPAEIL----SAGNMEEMILNGTAIEE-----LPSSIECLSR-LLHLGLRDCKRLKS 191 (353)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~i~~-----l~~~~~~l~~-L~~L~l~~~~~~~~ 191 (353)
.....++.++++.|..... ++..+. ...++++|.+++|.++. +...+...+. +..+++..|..-+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4466777777777654321 122222 35678888888887662 1123334444 55677776543322
Q ss_pred ----cCccccCC-CCCCEEEeeCccCC-----ccCcccCCCCCCcEEEeeCCCCc
Q 043910 192 ----LPKGLCKL-KSLKFLILNGCGIT-----QLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 192 ----l~~~~~~l-~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
+.+.+..+ ..++.++++.|.++ .+.+.+..++.++.+.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22334455 66788888888776 33445566778888888888764
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=0.71 Score=37.94 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHHH
Q 043910 266 PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILED 317 (353)
Q Consensus 266 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~ 317 (353)
++.++.|.+.+|..+.+-......+.-++|+.|++++|+.+++..+..+.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 4678889999999999888777777788999999999999999988776554
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.13 E-value=0.93 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.0
Q ss_pred CCCcEEEeeCCCCc
Q 043910 223 FSLEEFCLRKTKFE 236 (353)
Q Consensus 223 ~~L~~L~l~~~~l~ 236 (353)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666554
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.80 E-value=0.025 Score=53.43 Aligned_cols=174 Identities=22% Similarity=0.221 Sum_probs=100.1
Q ss_pred ceEEEccCCCcccc-----CCCCcCCCCccEEecCCCcCcCCCCCCc----cccCC-ccCcEEeecCCCCCcc----cch
Q 043910 82 LVLLEVPHSNIQQL-----GDGGQHHCKLSQIITAARNFVTKTPNPS----FIRSL-NKLTILNLSGCSQLKR----LPA 147 (353)
Q Consensus 82 L~~L~L~~~~i~~l-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~ 147 (353)
+..+.|.+|.+..- .......+.|..|++++++... .... .+... ..+++|.+..|..... +..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~--~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD--EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc--HhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 67777777776532 2344556778888888775421 1011 12222 4566677766654332 333
Q ss_pred hhhcCCCccEEEccCccCc-----ccCcccc----CCCCCCEEeccCCCCCcc----cCccccCCCC-CCEEEeeCccCC
Q 043910 148 EILSAGNMEEMILNGTAIE-----ELPSSIE----CLSRLLHLGLRDCKRLKS----LPKGLCKLKS-LKFLILNGCGIT 213 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~-----~l~~~~~----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~-L~~L~l~~~~i~ 213 (353)
.+.....++.++++.|.+. .++..+. ...++++|++++|..... +...+...++ +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 4445677888888887663 1223333 356777888877654321 1123344444 566777777665
Q ss_pred c-----cCcccCCC-CCCcEEEeeCCCCc-----ccchhHhhccCCceecccccc
Q 043910 214 Q-----LPENLGQL-FSLEEFCLRKTKFE-----KIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 214 ~-----~~~~~~~l-~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~ 257 (353)
. +.+.+..+ ..++++++..|.+. .+...+..+++++.+.+.+|.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 2 23334445 56788888888775 234455667778888777754
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.34 E-value=0.036 Score=46.35 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=71.2
Q ss_pred hhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEE
Q 043910 149 ILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEF 228 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 228 (353)
+......+.|+++.|++..+-..+..++.+..++++. +.+..+|..+++...++.+++..|..+..|...+..+.++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4456677788888887776666677777788888887 557778877888888888888888888888878888888888
Q ss_pred EeeCCCCc-ccchhHhhc
Q 043910 229 CLRKTKFE-KIPTNVIHL 245 (353)
Q Consensus 229 ~l~~~~l~-~l~~~l~~l 245 (353)
+.-+|.+. .+...++.|
T Consensus 117 e~k~~~~~~~~~~~v~~c 134 (326)
T KOG0473|consen 117 EQKKTEFFRKLFGFVWSC 134 (326)
T ss_pred hhccCcchHHHHhHhhhh
Confidence 88888765 333333333
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.57 E-value=2.5 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=11.7
Q ss_pred CCceEEEccCCCcccc
Q 043910 80 AKLVLLEVPHSNIQQL 95 (353)
Q Consensus 80 ~~L~~L~L~~~~i~~l 95 (353)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677888888877655
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.12 E-value=2.7 Score=22.02 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=12.2
Q ss_pred CCceEEEccCCCccccCC
Q 043910 80 AKLVLLEVPHSNIQQLGD 97 (353)
Q Consensus 80 ~~L~~L~L~~~~i~~l~~ 97 (353)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777776654
No 86
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=70.77 E-value=4.2 Score=19.86 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=14.8
Q ss_pred CceEEEccCCCccccCCCC
Q 043910 81 KLVLLEVPHSNIQQLGDGG 99 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~~~ 99 (353)
+|..|++.+++++.++.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4778899998888887653
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.70 E-value=9.8 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=9.4
Q ss_pred CCceEEEccCCCcc
Q 043910 80 AKLVLLEVPHSNIQ 93 (353)
Q Consensus 80 ~~L~~L~L~~~~i~ 93 (353)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.98 E-value=9.5 Score=36.41 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=17.6
Q ss_pred CCCceEEEccCCCccccC---CCCcCCCCccEEecCCC
Q 043910 79 PAKLVLLEVPHSNIQQLG---DGGQHHCKLSQIITAAR 113 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~---~~~~~~~~L~~L~l~~~ 113 (353)
.+.+..++|++|++..+. .-....|+|+.|+|+++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 445555555555554332 22233456666666655
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.03 E-value=22 Score=34.03 Aligned_cols=77 Identities=22% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCCCCCEEeccCCCCCccc---CccccCCCCCCEEEeeCc--cCCccCcccC--CCCCCcEEEeeCCCCc-ccch-----
Q 043910 174 CLSRLLHLGLRDCKRLKSL---PKGLCKLKSLKFLILNGC--GITQLPENLG--QLFSLEEFCLRKTKFE-KIPT----- 240 (353)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~~--~i~~~~~~~~--~l~~L~~L~l~~~~l~-~l~~----- 240 (353)
+.+.+..+++++|+ +..+ ...-+.-++|+.|+|++| .+..-++ +. ....|++|.+.||++. ....
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 45666777777643 3332 222345677888888887 3332211 11 2246778888888765 2211
Q ss_pred --hHhhccCCceec
Q 043910 241 --NVIHLSRLHSFC 252 (353)
Q Consensus 241 --~l~~l~~L~~L~ 252 (353)
....+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 112466666665
Done!