Query 043910
Match_columns 353
No_of_seqs 225 out of 3472
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 2E-26 6.9E-31 217.4 25.6 296 9-314 36-341 (477)
2 3v47_A TOLL-like receptor 5B a 99.9 1.9E-26 6.5E-31 216.3 23.4 301 9-317 34-420 (455)
3 3rgz_A Protein brassinosteroid 99.9 2.4E-26 8.3E-31 228.8 22.3 291 11-305 324-716 (768)
4 4fmz_A Internalin; leucine ric 99.9 1.1E-25 3.7E-30 203.7 24.1 271 10-304 49-322 (347)
5 4fmz_A Internalin; leucine ric 99.9 9.6E-26 3.3E-30 204.0 23.5 260 25-309 40-302 (347)
6 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-26 1.2E-30 218.0 20.8 99 9-114 25-126 (520)
7 3o6n_A APL1; leucine-rich repe 99.9 3.1E-25 1.1E-29 203.9 25.9 277 10-307 50-353 (390)
8 3t6q_A CD180 antigen; protein- 99.9 6.8E-26 2.3E-30 220.1 21.5 306 6-321 255-575 (606)
9 4ecn_A Leucine-rich repeat pro 99.9 7E-26 2.4E-30 225.6 20.9 287 11-307 497-841 (876)
10 4eco_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 222.1 18.7 239 60-307 332-601 (636)
11 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-25 5.8E-30 215.3 22.2 99 9-114 56-157 (562)
12 3t6q_A CD180 antigen; protein- 99.9 4.5E-25 1.5E-29 214.3 25.3 260 9-277 37-360 (606)
13 4fcg_A Uncharacterized protein 99.9 1.4E-25 4.6E-30 201.4 18.8 220 28-255 80-310 (328)
14 3rgz_A Protein brassinosteroid 99.9 1.1E-25 3.9E-30 224.0 19.9 217 60-277 271-500 (768)
15 3oja_B Anopheles plasmodium-re 99.9 9.2E-25 3.1E-29 211.6 25.6 257 10-277 56-355 (597)
16 3bz5_A Internalin-J, INLJ; leu 99.9 1E-24 3.4E-29 204.2 23.4 203 9-239 46-249 (457)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-25 6.4E-30 216.9 18.3 280 25-318 281-570 (606)
18 4eco_A Uncharacterized protein 99.9 6.1E-26 2.1E-30 221.2 14.3 286 11-305 255-578 (636)
19 1xku_A Decorin; proteoglycan, 99.9 3.2E-24 1.1E-28 192.7 24.3 236 60-305 54-305 (330)
20 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-24 5.8E-29 194.7 22.1 235 60-303 80-330 (332)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.6E-29 207.8 21.8 291 9-314 49-489 (520)
22 1o6v_A Internalin A; bacterial 99.9 2.3E-24 8E-29 202.7 23.9 169 125-304 195-364 (466)
23 4ecn_A Leucine-rich repeat pro 99.9 3.4E-24 1.1E-28 213.5 26.2 286 10-307 553-873 (876)
24 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-25 9.8E-30 213.1 18.0 134 9-149 30-168 (549)
25 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-25 8.1E-30 198.6 15.8 247 29-284 50-308 (313)
26 4fcg_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 198.9 15.6 213 59-275 82-309 (328)
27 3v47_A TOLL-like receptor 5B a 99.9 1.8E-24 6.2E-29 202.8 21.0 266 10-284 59-412 (455)
28 1xku_A Decorin; proteoglycan, 99.9 3.9E-24 1.3E-28 192.1 21.6 262 28-303 51-329 (330)
29 2z63_A TOLL-like receptor 4, v 99.9 3.9E-24 1.3E-28 206.1 21.4 165 149-315 369-540 (570)
30 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-23 3.7E-28 207.2 24.3 184 124-310 400-626 (680)
31 1ogq_A PGIP-2, polygalacturona 99.9 5.2E-25 1.8E-29 196.4 13.4 244 9-263 54-308 (313)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.8E-24 2E-28 204.6 21.7 291 9-316 80-520 (562)
33 3vq2_A TLR4, TOLL-like recepto 99.9 4.2E-24 1.4E-28 207.4 20.7 239 60-307 287-534 (606)
34 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-24 1.2E-28 192.7 18.4 259 9-278 58-331 (332)
35 2z81_A CD282 antigen, TOLL-lik 99.9 2E-23 6.9E-28 200.2 24.6 157 151-311 332-515 (549)
36 1o6v_A Internalin A; bacterial 99.9 2.7E-23 9.3E-28 195.4 24.7 211 79-306 176-388 (466)
37 4g8a_A TOLL-like receptor 4; l 99.9 3.1E-23 1E-27 202.0 26.0 304 9-321 56-595 (635)
38 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-23 6.4E-28 195.6 23.1 263 10-303 69-349 (457)
39 2id5_A Lingo-1, leucine rich r 99.9 7.3E-23 2.5E-27 193.1 27.0 280 10-303 16-306 (477)
40 2z63_A TOLL-like receptor 4, v 99.9 1.1E-23 3.8E-28 202.9 21.6 238 10-257 33-336 (570)
41 3j0a_A TOLL-like receptor 5; m 99.9 3.7E-23 1.3E-27 208.0 24.3 151 10-166 29-187 (844)
42 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-23 9E-28 182.9 17.9 197 60-258 34-237 (285)
43 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-22 6.3E-27 198.5 25.0 285 9-303 29-363 (680)
44 2z66_A Variable lymphocyte rec 99.9 9.8E-24 3.3E-28 187.5 14.3 216 60-278 30-259 (306)
45 2z66_A Variable lymphocyte rec 99.9 4.7E-23 1.6E-27 183.1 18.3 255 60-319 9-274 (306)
46 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-24 1.8E-28 190.2 12.1 247 20-283 25-278 (317)
47 3zyi_A Leucine-rich repeat-con 99.9 1.9E-22 6.4E-27 189.0 22.2 254 60-319 56-316 (452)
48 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4.2E-28 190.7 13.5 261 11-283 37-317 (353)
49 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.1E-27 186.0 20.8 255 9-278 73-350 (390)
50 3j0a_A TOLL-like receptor 5; m 99.9 3E-22 1E-26 201.3 24.0 240 10-256 53-372 (844)
51 3zyj_A Leucine-rich repeat-con 99.9 4.6E-22 1.6E-26 185.7 22.6 254 60-319 45-305 (440)
52 1jl5_A Outer protein YOPM; leu 99.9 8.8E-23 3E-27 190.9 16.8 195 60-277 93-287 (454)
53 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-21 1E-25 186.3 27.1 258 9-311 44-301 (622)
54 3o53_A Protein LRIM1, AGAP0063 99.9 3.4E-24 1.2E-28 191.5 6.0 237 9-262 38-278 (317)
55 2z80_A TOLL-like receptor 2, v 99.9 1E-21 3.6E-26 178.0 22.1 242 63-310 36-318 (353)
56 3zyj_A Leucine-rich repeat-con 99.9 4.3E-22 1.5E-26 185.9 19.9 220 29-257 64-290 (440)
57 3oja_B Anopheles plasmodium-re 99.9 5.1E-22 1.7E-26 192.3 20.5 237 9-258 79-357 (597)
58 1jl5_A Outer protein YOPM; leu 99.9 4.1E-21 1.4E-25 179.6 25.9 220 60-305 133-369 (454)
59 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-22 3.3E-26 172.8 20.3 217 9-236 15-238 (285)
60 3zyi_A Leucine-rich repeat-con 99.9 1.4E-21 4.8E-26 183.0 20.7 220 29-257 75-301 (452)
61 3oja_A Leucine-rich immune mol 99.9 6.4E-23 2.2E-27 193.6 10.0 215 28-259 33-250 (487)
62 3oja_A Leucine-rich immune mol 99.9 7.4E-22 2.5E-26 186.3 14.4 232 9-257 38-273 (487)
63 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-20 1.2E-24 178.7 24.0 236 28-307 39-274 (622)
64 2xwt_C Thyrotropin receptor; s 99.9 4.6E-21 1.6E-25 164.0 15.4 205 70-279 23-238 (239)
65 1wwl_A Monocyte differentiatio 99.9 2.4E-22 8.3E-27 179.0 6.7 192 60-256 97-306 (312)
66 1h6u_A Internalin H; cell adhe 99.9 1.7E-20 5.7E-25 166.7 17.7 186 60-257 43-228 (308)
67 3rfs_A Internalin B, repeat mo 99.8 3.9E-20 1.3E-24 161.4 17.1 202 60-271 43-247 (272)
68 2o6q_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 157.8 20.5 173 60-235 39-217 (270)
69 1h6u_A Internalin H; cell adhe 99.8 2.9E-20 9.9E-25 165.2 16.5 197 25-240 37-234 (308)
70 1p9a_G Platelet glycoprotein I 99.8 7E-20 2.4E-24 161.3 18.0 199 25-236 6-208 (290)
71 2z62_A TOLL-like receptor 4, v 99.8 6.7E-20 2.3E-24 160.3 17.4 14 81-94 29-42 (276)
72 2z62_A TOLL-like receptor 4, v 99.8 3.4E-20 1.2E-24 162.1 15.1 195 60-256 30-234 (276)
73 2o6q_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 155.2 21.2 195 60-258 18-217 (270)
74 1wwl_A Monocyte differentiatio 99.8 1.4E-20 4.7E-25 167.7 12.2 203 27-237 93-310 (312)
75 3rfs_A Internalin B, repeat mo 99.8 2E-20 6.7E-25 163.3 12.6 216 60-285 21-240 (272)
76 1p9a_G Platelet glycoprotein I 99.8 2.4E-19 8.2E-24 157.8 17.8 193 59-258 11-207 (290)
77 2xwt_C Thyrotropin receptor; s 99.8 6.6E-20 2.3E-24 156.8 12.6 193 59-257 32-237 (239)
78 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-21 3.8E-26 184.1 1.3 246 8-257 6-295 (461)
79 1z7x_W Ribonuclease inhibitor; 99.8 2.7E-21 9.2E-26 181.4 3.4 210 22-235 49-296 (461)
80 2ast_B S-phase kinase-associat 99.8 2.4E-21 8.1E-26 174.3 1.5 32 81-112 71-102 (336)
81 4ay9_X Follicle-stimulating ho 99.8 8.4E-19 2.9E-23 158.6 18.0 233 63-301 14-254 (350)
82 4glp_A Monocyte differentiatio 99.8 3.6E-20 1.2E-24 164.8 7.3 196 79-277 90-304 (310)
83 2ca6_A RAN GTPase-activating p 99.8 1E-20 3.6E-25 173.5 2.6 234 22-258 25-315 (386)
84 2ast_B S-phase kinase-associat 99.8 6.4E-20 2.2E-24 164.9 5.1 219 30-256 48-282 (336)
85 3m19_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 145.5 17.1 173 60-236 16-192 (251)
86 3cvr_A Invasion plasmid antige 99.8 5.3E-18 1.8E-22 161.8 18.0 193 24-246 49-254 (571)
87 4glp_A Monocyte differentiatio 99.8 5.8E-19 2E-23 156.9 10.3 195 103-304 91-305 (310)
88 3m19_A Variable lymphocyte rec 99.8 2E-17 6.9E-22 142.4 19.0 170 82-256 16-189 (251)
89 1h6t_A Internalin B; cell adhe 99.8 8.1E-18 2.8E-22 148.1 16.1 166 60-236 48-213 (291)
90 1h6t_A Internalin B; cell adhe 99.8 3E-18 1E-22 150.9 13.0 187 60-258 26-212 (291)
91 3cvr_A Invasion plasmid antige 99.8 1.3E-17 4.5E-22 159.1 17.4 182 59-264 60-248 (571)
92 4ezg_A Putative uncharacterize 99.8 5.1E-18 1.7E-22 140.7 11.6 152 78-236 42-194 (197)
93 4ay9_X Follicle-stimulating ho 99.7 3E-17 1E-21 148.4 16.9 212 60-275 32-254 (350)
94 3ogk_B Coronatine-insensitive 99.7 6.9E-20 2.4E-24 177.2 -0.9 279 26-312 161-506 (592)
95 2ca6_A RAN GTPase-activating p 99.7 3.9E-19 1.3E-23 163.0 3.9 224 78-304 30-314 (386)
96 3ogk_B Coronatine-insensitive 99.7 7.8E-19 2.7E-23 169.8 4.8 282 22-311 129-480 (592)
97 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.5E-22 159.5 13.8 169 60-239 45-213 (605)
98 4g8a_A TOLL-like receptor 4; l 99.7 1.1E-16 3.8E-21 155.7 17.9 244 24-278 323-578 (635)
99 1m9s_A Internalin B; cell inva 99.7 5.9E-17 2E-21 156.1 15.6 170 27-214 41-211 (605)
100 2o6s_A Variable lymphocyte rec 99.7 1.9E-16 6.4E-21 132.3 15.8 146 125-278 48-196 (208)
101 3goz_A Leucine-rich repeat-con 99.7 2.9E-18 9.8E-23 155.8 2.7 243 10-257 3-295 (362)
102 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.8E-21 132.6 11.6 150 100-257 41-192 (197)
103 3goz_A Leucine-rich repeat-con 99.7 3E-18 1E-22 155.7 1.8 216 34-257 3-264 (362)
104 2o6s_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 130.1 14.0 177 61-247 10-190 (208)
105 2p1m_B Transport inhibitor res 99.7 1.4E-18 4.7E-23 168.1 -2.2 282 26-316 102-453 (594)
106 1xeu_A Internalin C; cellular 99.7 5.8E-17 2E-21 140.5 8.3 166 60-237 21-186 (263)
107 1xeu_A Internalin C; cellular 99.7 1.2E-16 4.2E-21 138.4 10.3 170 28-216 18-188 (263)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-15 3.8E-20 128.8 15.0 150 84-236 15-166 (220)
109 2p1m_B Transport inhibitor res 99.7 4.2E-18 1.5E-22 164.7 -0.7 87 23-114 123-222 (594)
110 2xot_A Amphoterin-induced prot 99.7 1.2E-15 4E-20 138.5 14.9 173 60-236 20-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 2.3E-15 7.9E-20 126.8 14.8 113 124-236 51-165 (220)
112 2xot_A Amphoterin-induced prot 99.6 1.8E-15 6.3E-20 137.2 13.4 170 83-256 21-199 (361)
113 3e6j_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 124.5 15.6 111 124-236 59-172 (229)
114 1dce_A Protein (RAB geranylger 99.6 6.6E-18 2.3E-22 161.7 -3.8 181 77-263 346-549 (567)
115 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 122.7 10.0 128 129-257 24-158 (168)
116 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 122.6 16.5 150 60-213 21-172 (229)
117 2v70_A SLIT-2, SLIT homolog 2 99.6 8.8E-15 3E-19 123.2 14.9 151 60-213 13-166 (220)
118 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.6E-20 119.6 8.6 126 128-254 16-148 (149)
119 2v9t_B SLIT homolog 2 protein 99.6 2.5E-14 8.7E-19 120.4 15.1 149 60-213 13-165 (220)
120 2ell_A Acidic leucine-rich nuc 99.6 9.3E-15 3.2E-19 117.6 11.5 133 79-216 23-163 (168)
121 4b8c_D Glucose-repressible alc 99.6 2.9E-15 9.9E-20 147.7 8.0 150 123-277 218-369 (727)
122 1dce_A Protein (RAB geranylger 99.5 1.6E-17 5.5E-22 159.0 -9.7 192 58-253 349-567 (567)
123 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 115.0 10.6 130 124-257 14-151 (176)
124 4b8c_D Glucose-repressible alc 99.5 5.1E-15 1.8E-19 145.9 3.2 114 78-195 222-335 (727)
125 1w8a_A SLIT protein; signaling 99.5 3.5E-13 1.2E-17 110.9 13.2 86 151-236 52-139 (192)
126 2je0_A Acidic leucine-rich nuc 99.5 7.4E-14 2.5E-18 110.0 8.7 123 80-207 17-147 (149)
127 1w8a_A SLIT protein; signaling 99.5 2.6E-13 8.7E-18 111.7 11.2 124 132-258 11-138 (192)
128 2wfh_A SLIT homolog 2 protein 99.5 4.2E-13 1.4E-17 110.5 11.9 124 106-236 13-139 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-14 2.4E-18 113.4 6.2 87 149-236 60-153 (176)
130 3sb4_A Hypothetical leucine ri 99.4 7.8E-13 2.7E-17 118.3 12.8 98 152-252 225-327 (329)
131 2wfh_A SLIT homolog 2 protein 99.4 5.6E-12 1.9E-16 103.7 13.3 123 62-212 14-138 (193)
132 1ds9_A Outer arm dynein; leuci 99.4 8.1E-15 2.8E-19 121.4 -4.6 107 125-235 44-152 (198)
133 2o6r_A Variable lymphocyte rec 99.3 2.9E-11 9.8E-16 97.9 13.9 107 129-236 28-137 (177)
134 4fdw_A Leucine rich hypothetic 99.3 9E-11 3.1E-15 107.5 18.5 215 22-255 129-354 (401)
135 2o6r_A Variable lymphocyte rec 99.3 3.4E-11 1.1E-15 97.5 13.9 88 125-213 48-137 (177)
136 1ds9_A Outer arm dynein; leuci 99.3 4.3E-14 1.5E-18 117.0 -3.5 115 143-260 38-154 (198)
137 3sb4_A Hypothetical leucine ri 99.3 9.8E-12 3.4E-16 111.1 10.5 258 28-300 24-328 (329)
138 2r9u_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 96.5 9.8 106 131-240 14-122 (174)
139 2r9u_A Variable lymphocyte rec 99.2 7.1E-11 2.4E-15 95.4 10.7 84 129-213 33-118 (174)
140 3g39_A Variable lymphocyte rec 99.2 6.3E-11 2.2E-15 95.3 9.8 103 130-236 10-115 (170)
141 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 93.9 11.0 84 129-213 30-115 (170)
142 4fdw_A Leucine rich hypothetic 99.2 8.9E-09 3E-13 94.2 22.7 183 81-277 158-355 (401)
143 2ifg_A High affinity nerve gro 99.0 2.3E-09 7.9E-14 96.3 12.6 101 134-236 13-116 (347)
144 3un9_A NLR family member X1; l 99.0 2.8E-11 9.5E-16 109.8 -2.0 155 80-236 72-252 (372)
145 3un9_A NLR family member X1; l 98.9 1.9E-10 6.6E-15 104.3 0.2 153 102-257 71-250 (372)
146 2ifg_A High affinity nerve gro 98.9 9.6E-09 3.3E-13 92.2 10.3 102 62-166 12-116 (347)
147 4fs7_A Uncharacterized protein 98.8 9.1E-07 3.1E-11 80.8 19.9 262 17-301 82-374 (394)
148 4fs7_A Uncharacterized protein 98.7 6.5E-07 2.2E-11 81.7 17.7 264 16-300 58-350 (394)
149 2ra8_A Uncharacterized protein 98.7 1.7E-08 5.9E-13 90.8 6.6 130 124-256 167-317 (362)
150 2ra8_A Uncharacterized protein 98.7 1.2E-08 4.1E-13 91.8 5.2 151 100-257 169-341 (362)
151 4gt6_A Cell surface protein; l 98.7 3.1E-06 1E-10 77.3 20.9 268 17-303 51-367 (394)
152 3e4g_A ATP synthase subunit S, 98.6 3.1E-08 1E-12 79.0 3.7 87 224-311 62-157 (176)
153 4h09_A Hypothetical leucine ri 98.5 8.5E-06 2.9E-10 73.8 19.9 240 18-275 58-341 (379)
154 1io0_A Tropomodulin; LRR prote 98.4 2.2E-07 7.4E-12 75.5 3.9 42 125-166 32-78 (185)
155 4gt6_A Cell surface protein; l 98.3 5.3E-05 1.8E-09 68.9 19.4 239 18-276 103-366 (394)
156 3e4g_A ATP synthase subunit S, 98.3 6.2E-07 2.1E-11 71.4 5.2 86 104-191 62-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.3 2.4E-07 8.3E-12 75.2 2.6 108 149-256 32-161 (185)
158 3rw6_A Nuclear RNA export fact 98.2 8.7E-07 3E-11 75.9 3.5 79 173-252 167-257 (267)
159 4h09_A Hypothetical leucine ri 98.1 0.00021 7.3E-09 64.5 19.1 127 124-255 212-342 (379)
160 3rw6_A Nuclear RNA export fact 97.8 2.4E-05 8.4E-10 66.8 5.7 77 151-229 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0019 6.5E-08 52.2 4.4 35 199-233 97-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0027 9.4E-08 51.3 3.7 108 128-235 40-169 (197)
163 3rfe_A Platelet glycoprotein I 95.8 0.011 3.7E-07 44.4 4.8 54 180-236 12-68 (130)
164 3rfe_A Platelet glycoprotein I 94.3 0.087 3E-06 39.4 5.9 35 177-212 32-67 (130)
165 2lz0_A Uncharacterized protein 41.8 34 0.0012 23.7 4.2 14 124-137 15-28 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=217.43 Aligned_cols=296 Identities=19% Similarity=0.135 Sum_probs=239.5
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.++.|.++++|++|++++|.+++. .+..+..+. |++|++++|.++.++. +..+++|+.|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV------EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEe------ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 457777777777788999999999999999988642 244555555 9999999999998884 4478999999
Q ss_pred EccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc
Q 043910 86 EVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA 164 (353)
Q Consensus 86 ~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 164 (353)
++++|.+..+. ..+..+++|+.|++++|.. +... ...+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCcc-ceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 99999998864 4567799999999998753 3332 3478899999999999976554444568889999999999999
Q ss_pred CcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCcccch-h
Q 043910 165 IEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKIPT-N 241 (353)
Q Consensus 165 i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~ 241 (353)
+..++. .+..+++|++|++++|...+.++.......+|+.|++++|.++.+|. .+..+++|+.|++++|.+..++. .
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 996654 68889999999999999888888776677799999999999998884 67889999999999999986654 5
Q ss_pred HhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhH
Q 043910 242 VIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 242 l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
+..+++|+.|++++|......+. .+++|+.|+++++ .++.++...+ ..+++|+.+++.+++.-++.....+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVF-HSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGB-SCGGGCCEEECCSSCEECSGGGHHH
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHc-CCCcccCEEEccCCCccCccchHhH
Confidence 78899999999999754443343 3578999999998 6777776544 3467899999999988777655433
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.9e-26 Score=216.26 Aligned_cols=301 Identities=18% Similarity=0.130 Sum_probs=223.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC-C-CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL-P-SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l-~-~~~~~~~L~~L 85 (353)
.+|++++...++.+..|.++++|++|++++|.+.+.. .+..+..++ |++|++++|.++.+ | .+..+++|++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-----RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE-----CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceE-----CcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 4567777777777888999999999999999875432 233455455 99999999998866 3 35578999999
Q ss_pred EccCCCccc-cCC--CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhc-----------
Q 043910 86 EVPHSNIQQ-LGD--GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS----------- 151 (353)
Q Consensus 86 ~L~~~~i~~-l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------- 151 (353)
++++|.+++ .+. .+..+++|++|++++|.. +.......+..+++|++|++++|...+..+..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999976 222 266789999999998753 33332234788999999999998765554444433
Q ss_pred -----------------------CCCccEEEccCccCcc-cCcccc----------------------------------
Q 043910 152 -----------------------AGNMEEMILNGTAIEE-LPSSIE---------------------------------- 173 (353)
Q Consensus 152 -----------------------~~~L~~L~l~~~~i~~-l~~~~~---------------------------------- 173 (353)
+++|++|++++|.++. .|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 2567888888877652 222111
Q ss_pred -----CCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCccc-chhHhhcc
Q 043910 174 -----CLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKI-PTNVIHLS 246 (353)
Q Consensus 174 -----~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~ 246 (353)
..++|++|++++|...+..|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+..+ +..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 125788888888766556677889999999999999999966 55788999999999999999865 56788999
Q ss_pred CCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH-HHhHHHH
Q 043910 247 RLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE-LRSILED 317 (353)
Q Consensus 247 ~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~-~~~~~~~ 317 (353)
+|+.|++++|......|. .+++|++|+++++ .++.++...+ ..+++|+.+++++++.-.... ...+..+
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 999999999765444343 3578999999997 5777776543 357889999999998776665 3333334
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.4e-26 Score=228.85 Aligned_cols=291 Identities=19% Similarity=0.199 Sum_probs=201.9
Q ss_pred eCCCcccc-ccCHHHHhcCCCCcEEEeeeCCCCCCccceeec-------------------CCCCC---CCccceEeecc
Q 043910 11 DMSKVEEI-HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSN-------------------IQDPV---FPEIRYLFWHG 67 (353)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------~~~~~---~~~L~~L~l~~ 67 (353)
+++++... .+....|.++++|++|++++|.+++..+..... +..+. ...|++|++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 34444433 444555677777777777777665433322110 11111 11256666666
Q ss_pred cCCC-CCCC-CCCCCCceEEEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc
Q 043910 68 YPLK-SLPS-ITHPAKLVLLEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR 144 (353)
Q Consensus 68 ~~~~-~l~~-~~~~~~L~~L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 144 (353)
|.++ .+|. +..+++|+.|++++|.+++ ++..+..+++|+.|++++|...... +..+..+++|++|++++|...+.
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCc
Confidence 6554 3332 3356777777777777763 4455566777777777776532222 34677788888888888777777
Q ss_pred cchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcc----
Q 043910 145 LPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPEN---- 218 (353)
Q Consensus 145 ~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~---- 218 (353)
+|..+..+++|++|++++|.++ .+|.+++.+++|++|++++|...+.+|..++.+++|+.|++++|.++ .+|..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 7888888888888888888888 67778888888888888887766678888888888888888888765 34432
Q ss_pred ------------------------------------------------------------------cCCCCCCcEEEeeC
Q 043910 219 ------------------------------------------------------------------LGQLFSLEEFCLRK 232 (353)
Q Consensus 219 ------------------------------------------------------------------~~~l~~L~~L~l~~ 232 (353)
+..+++|+.|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 33456788899999
Q ss_pred CCCc-ccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCcc
Q 043910 233 TKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYK 305 (353)
Q Consensus 233 ~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~ 305 (353)
|.+. .+|..++++++|+.|++++|...+.+|.. +++|+.|+++++.--..+|.... .++.|+.+++++|.-
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSNNNL 716 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCSSEE
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcCCcc
Confidence 9988 78888999999999999998777788864 46788999999865556665443 367789999999843
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.1e-25 Score=203.69 Aligned_cols=271 Identities=14% Similarity=0.159 Sum_probs=194.5
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
+++++....++. .+..+++|++|++++|.+++..+ +.... |++|++++|.++.++.+..+++|++|+++
T Consensus 49 L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--------LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118 (347)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred EEEeCCccccch--hhhhcCCccEEEccCCccccchh--------hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence 345555444443 37889999999999998865321 33334 99999999999998888899999999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.+..++. +..+++|+.|++++|..++. .+.+..+++|++|++++|... .++. +..+++|+.|++++|.++.+
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCC
T ss_pred CCcccCchh-hccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccc
Confidence 999988765 77889999999999876543 345788889999999886543 3333 77788888888888888877
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCC
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 248 (353)
+. +..+++|+++++++|. +..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|
T Consensus 193 ~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L 267 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKL 267 (347)
T ss_dssp GG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred cc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCc
Confidence 65 6777888888887753 444433 6677778888888887776665 677777888888777777653 46677777
Q ss_pred ceeccccccccccCCC--CCCCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 249 HSFCLSYCERLQSLPK--LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 249 ~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
+.|++++| .++.++. .+++|+.|++++|. ++..+.... ..+++|+.+++++|+
T Consensus 268 ~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 268 KMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNH 322 (347)
T ss_dssp CEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSS
T ss_pred CEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCc
Confidence 77777776 3444432 34677777777774 443332222 235667777777775
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=9.6e-26 Score=204.01 Aligned_cols=260 Identities=17% Similarity=0.261 Sum_probs=202.4
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC 103 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~ 103 (353)
+..+++|++|++++|.+... +.+...+ |++|++++|.++.++.+..+++|+.|++++|.++.++ .+..++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--------QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--------TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred chhcccccEEEEeCCccccc--------hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 45688899999999887431 2233344 9999999999888888778899999999999888764 477789
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
+|++|++++|. ++ ..+.+..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|++|++
T Consensus 111 ~L~~L~l~~n~-i~---~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDN-IS---DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSC-CC---CCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEEC
T ss_pred cCCEEECcCCc-cc---CchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEc
Confidence 99999998874 22 234478889999999999876666554 7888999999999998887765 778899999999
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
++|. +..++. +..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++| .++.++
T Consensus 185 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 259 (347)
T 4fmz_A 185 NYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDIN 259 (347)
T ss_dssp TTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred cCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCCh
Confidence 9864 555554 7788999999999998887665 7788899999999999887766 788899999999986 344444
Q ss_pred C--CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchH
Q 043910 264 K--LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRN 309 (353)
Q Consensus 264 ~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 309 (353)
. .+++|+.|++++| .+++++. ...+++|+.|++++|. +...
T Consensus 260 ~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~ 302 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNNQ-LGNE 302 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSSC-CCGG
T ss_pred hHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCCc-CCCc
Confidence 2 4578999999988 5666643 3456788999999984 4443
No 6
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=217.99 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=78.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++....+.+++|.++++|++|++++|.+++.. +..+..+. |++|++++|.++.+|.. .+++|++|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD------ISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE------GGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcC------hHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 4567777777788889999999999999999886532 23344444 99999999999888877 7899999999
Q ss_pred cCCCcccc--CCCCcCCCCccEEecCCCc
Q 043910 88 PHSNIQQL--GDGGQHHCKLSQIITAARN 114 (353)
Q Consensus 88 ~~~~i~~l--~~~~~~~~~L~~L~l~~~~ 114 (353)
++|.++.+ +..+..+++|++|++++|.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cCCccccccchhhhccCCcceEEEecCcc
Confidence 99998863 4567778888888888764
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-25 Score=203.94 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=209.7
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~ 86 (353)
+++++.....+....|..+++|++|++++|.+.+. .+..+..+. |++|++++|.++.++. +..+++|+.|+
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCccccc------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34455555667788889999999999999988542 223455555 9999999999888763 44789999999
Q ss_pred ccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCC-----------
Q 043910 87 VPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGN----------- 154 (353)
Q Consensus 87 L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------- 154 (353)
+++|.++.++... ..+++|++|++++|.. +... ...+..+++|++|++++|.... ++ +..+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCC-TTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccC-hhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 9999999888764 6789999999998753 3332 3467888999999999975443 22 233444
Q ss_pred --------ccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCC
Q 043910 155 --------MEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSL 225 (353)
Q Consensus 155 --------L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L 225 (353)
|+.|++++|.++.+|.. ..++|++|++++|. ++.. ..+..+++|+.|++++|.++.+ |..+..+++|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 55555555555544432 24689999999865 4444 3578999999999999999865 7778999999
Q ss_pred cEEEeeCCCCcccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecC
Q 043910 226 EEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELST 302 (353)
Q Consensus 226 ~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~ 302 (353)
+.|++++|.+..++..+..+++|+.|++++| .++.+|.. +++|+.|++++|. ++.++ ...+++|+.+++++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSH 348 (390)
T ss_dssp CEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCS
T ss_pred CEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCC
Confidence 9999999999988887788999999999997 45666653 4789999999985 66665 34467899999999
Q ss_pred CccCc
Q 043910 303 NYKLD 307 (353)
Q Consensus 303 c~~l~ 307 (353)
++.-+
T Consensus 349 N~~~~ 353 (390)
T 3o6n_A 349 NDWDC 353 (390)
T ss_dssp SCEEH
T ss_pred CCccc
Confidence 96544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=6.8e-26 Score=220.06 Aligned_cols=306 Identities=18% Similarity=0.093 Sum_probs=223.3
Q ss_pred EEEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCc
Q 043910 6 EGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKL 82 (353)
Q Consensus 6 ~~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L 82 (353)
..-.++++++...++.+..|..+++|++|++++|.++. .+..+...+ |++|++++|.++.++ .+..+++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 34456667777777777778888888888888887752 233344444 888888888877664 34477888
Q ss_pred eEEEccCCCcc-ccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEc
Q 043910 83 VLLEVPHSNIQ-QLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMIL 160 (353)
Q Consensus 83 ~~L~L~~~~i~-~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 160 (353)
+.|++++|.+. .++.. +..+++|++|++++|...........+..+++|++|++++|...+..+..+..+++|+.|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 88888888776 34433 56788888888888753221111235778888999999887666666777888889999999
Q ss_pred cCccCccc-C-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCc--c--CcccCCCCCCcEEEeeCCC
Q 043910 161 NGTAIEEL-P-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ--L--PENLGQLFSLEEFCLRKTK 234 (353)
Q Consensus 161 ~~~~i~~l-~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~--~--~~~~~~l~~L~~L~l~~~~ 234 (353)
++|.++.. + ..+..+++|++|++++|......|..+..+++|++|++++|.++. + +..+..+++|+.|++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 99888744 3 347788899999999876555566678889999999999998874 2 2457788899999999999
Q ss_pred Cccc-chhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 235 FEKI-PTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 235 l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
+..+ |..+..+++|+.|++++|......|.. ++.| .|++++| .++.++.... ..+++|+.+++++|+..++..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLL-PILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGH-HHHHTSSEEECTTCCEECSGG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhc-ccCCCCCEEeCCCCCccccCC
Confidence 8855 567888999999999987655544443 3566 8888887 4555554332 246789999999999988888
Q ss_pred HHhHHHHHHHh
Q 043910 311 LRSILEDALQK 321 (353)
Q Consensus 311 ~~~~~~~~~~~ 321 (353)
......+....
T Consensus 565 ~~~~~~w~~~~ 575 (606)
T 3t6q_A 565 NIYFLEWYKEN 575 (606)
T ss_dssp GHHHHHHHHHC
T ss_pred cHHHHHHHHhC
Confidence 77777776544
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=7e-26 Score=225.55 Aligned_cols=287 Identities=16% Similarity=0.202 Sum_probs=182.1
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCC-CCC-CccceeecCC-CCCCC-ccceEeecccCCCCCCC---CCCCCCce
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSS-ING-ENKCKVSNIQ-DPVFP-EIRYLFWHGYPLKSLPS---ITHPAKLV 83 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~l~~---~~~~~~L~ 83 (353)
+++++......+..|.++++|++|++++|. +++ ..|....... .+... .|++|++++|.++.+|. +..+++|+
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCC
Confidence 334443333445666777777777777776 655 3332221110 11112 25555555555555554 33455555
Q ss_pred EEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCcc--------------------------CcEEeec
Q 043910 84 LLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNK--------------------------LTILNLS 137 (353)
Q Consensus 84 ~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~--------------------------L~~L~l~ 137 (353)
.|++++|.++.++ .+..+++|+.|++++|.. +.+ +..+..+++ |++|+++
T Consensus 577 ~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l-~~l--p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 577 LLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQI-EEI--PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EEECTTSCCCBCC-CCCTTSEESEEECCSSCC-SCC--CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred EEECCCCCcccch-hhcCCCcceEEECcCCcc-ccc--hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECc
Confidence 5555555555444 444445555555554432 111 123344444 4555555
Q ss_pred CCCCCcccch---hhh--cCCCccEEEccCccCcccCcccc-CCCCCCEEeccCCCCCcccCccccC--------CCCCC
Q 043910 138 GCSQLKRLPA---EIL--SAGNMEEMILNGTAIEELPSSIE-CLSRLLHLGLRDCKRLKSLPKGLCK--------LKSLK 203 (353)
Q Consensus 138 ~~~~~~~~~~---~~~--~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~ 203 (353)
+|...+.+|. .+. .+++|+.|++++|.++.+|..+. .+++|++|++++|. ++.+|..+.. +++|+
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCcc
Confidence 5443332221 111 23467888888888887777654 78899999999864 5577764433 33899
Q ss_pred EEEeeCccCCccCcccC--CCCCCcEEEeeCCCCcccchhHhhccCCceecccc------ccccccCCCC---CCCccee
Q 043910 204 FLILNGCGITQLPENLG--QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY------CERLQSLPKL---PCNLKEL 272 (353)
Q Consensus 204 ~L~l~~~~i~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~------~~~l~~l~~~---~~~L~~L 272 (353)
.|++++|.++.+|..+. .+++|+.|++++|.+..+|..+..+++|+.|++++ |...+.+|.. +++|+.|
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 99999999999998887 89999999999999998998899999999999977 4445666753 5789999
Q ss_pred ecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 273 DADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 273 ~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
++++|. ++.+|.... ++|+.|++++|+...
T Consensus 812 ~Ls~N~-L~~Ip~~l~----~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 812 QIGSND-IRKVDEKLT----PQLYILDIADNPNIS 841 (876)
T ss_dssp ECCSSC-CCBCCSCCC----SSSCEEECCSCTTCE
T ss_pred ECCCCC-CCccCHhhc----CCCCEEECCCCCCCc
Confidence 999985 588887632 589999999996543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=4.6e-26 Score=222.11 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=171.3
Q ss_pred cceEeecccCCC-CCCCCCCCCCceEEEccCCCccccCCCCcCCCC-ccEEecCCCcCcCCCCCCccccC--CccCcEEe
Q 043910 60 IRYLFWHGYPLK-SLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCK-LSQIITAARNFVTKTPNPSFIRS--LNKLTILN 135 (353)
Q Consensus 60 L~~L~l~~~~~~-~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~--l~~L~~L~ 135 (353)
|++|++++|.++ .+|.+..+++|+.|++++|.++.++..+..+++ |+.|++++|. ++.++ ..+.. +++|++|+
T Consensus 332 L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp--~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIP--NIFDAKSVSVMSAID 408 (636)
T ss_dssp CCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCC--SCCCTTCSSCEEEEE
T ss_pred CCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccc--hhhhhcccCccCEEE
Confidence 555555555554 455333455555555555555555555556666 7777776654 23332 23333 33677777
Q ss_pred ecCCCCCcccchhhh-------cCCCccEEEccCccCcccCccc-cCCCCCCEEeccCCCCCcccCccccC--------C
Q 043910 136 LSGCSQLKRLPAEIL-------SAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKGLCK--------L 199 (353)
Q Consensus 136 l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~--------l 199 (353)
+++|...+..|..+. .+++|+.|++++|.++.+|..+ ..+++|++|++++|. ++.+|..+.. +
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccccccccc
Confidence 777766666666665 6678899999999888887754 458999999999865 5577754322 2
Q ss_pred CCCCEEEeeCccCCccCcccC--CCCCCcEEEeeCCCCcccchhHhhccCCceecccc------ccccccCCCC---CCC
Q 043910 200 KSLKFLILNGCGITQLPENLG--QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY------CERLQSLPKL---PCN 268 (353)
Q Consensus 200 ~~L~~L~l~~~~i~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~------~~~l~~l~~~---~~~ 268 (353)
++|+.|++++|.++.+|..+. .+++|+.|++++|.+..+|..+.++++|+.|++++ |...+.+|.. +++
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 389999999999999998887 89999999999999999998899999999999954 4445667754 478
Q ss_pred cceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 269 LKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 269 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
|+.|++++|. ++.+|.... ++|+.|++++|+..+
T Consensus 568 L~~L~Ls~N~-l~~ip~~~~----~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 568 LTQLQIGSND-IRKVNEKIT----PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCEEECCSSC-CCBCCSCCC----TTCCEEECCSCTTCE
T ss_pred CCEEECCCCc-CCccCHhHh----CcCCEEECcCCCCcc
Confidence 9999999985 588876533 689999999996554
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.7e-25 Score=215.35 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=77.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++....+.+++|.++++|++|++++|.+++. .+..+..+. |++|++++|.++.+|.. .+++|+.|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL------DFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDL 128 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE------CTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEEC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcC------CHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEEC
Confidence 456777777777788889999999999999988642 234455555 99999999998888876 7889999999
Q ss_pred cCCCccccC--CCCcCCCCccEEecCCCc
Q 043910 88 PHSNIQQLG--DGGQHHCKLSQIITAARN 114 (353)
Q Consensus 88 ~~~~i~~l~--~~~~~~~~L~~L~l~~~~ 114 (353)
++|.++.++ ..+..+++|++|+++++.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc
Confidence 999988765 467778888888888764
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=4.5e-25 Score=214.29 Aligned_cols=260 Identities=18% Similarity=0.197 Sum_probs=181.6
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L 85 (353)
.+|++++....+.+.+|.++++|++|++++|.+.+ ..+..+..+. |++|++++|.+..++ .+..+++|++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 56777777777888899999999999999998854 2344555555 999999999987664 35588999999
Q ss_pred EccCCCcccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCcc--EEEccC
Q 043910 86 EVPHSNIQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME--EMILNG 162 (353)
Q Consensus 86 ~L~~~~i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~ 162 (353)
++++|.++.+ +..+..+++|++|++++|.. +... .+.+..+++|++|++++|...+..+..+..+++|+ .|++++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSIK-LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCC-CCCC-CCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcc-cccC-cccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 9999999886 45677889999999998753 3333 23445589999999999766655566788888888 788888
Q ss_pred ccCcccCccccCCC----------------------------------------------------CCCEEeccCCCCCc
Q 043910 163 TAIEELPSSIECLS----------------------------------------------------RLLHLGLRDCKRLK 190 (353)
Q Consensus 163 ~~i~~l~~~~~~l~----------------------------------------------------~L~~L~l~~~~~~~ 190 (353)
|.++.+++...... +|+++++++|. ++
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~ 267 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FF 267 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cC
Confidence 87775544322222 34455555533 23
Q ss_pred ccC-ccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC----
Q 043910 191 SLP-KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK---- 264 (353)
Q Consensus 191 ~l~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~---- 264 (353)
.++ ..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ +..+..+++|++|++++|.....++.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 333 346667777777777777777777777777777777777777644 34566677777777776654434432
Q ss_pred CCCCcceeecCCC
Q 043910 265 LPCNLKELDADHC 277 (353)
Q Consensus 265 ~~~~L~~L~l~~c 277 (353)
.+++|++|++++|
T Consensus 348 ~l~~L~~L~l~~n 360 (606)
T 3t6q_A 348 NLENLRELDLSHD 360 (606)
T ss_dssp TCTTCCEEECCSS
T ss_pred ccCcCCEEECCCC
Confidence 2355666666554
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-25 Score=201.39 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=157.1
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC-CCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
.++++.|++++|.+.. .+..+..+. |++|++++|.++.+|. +..+++|++|++++|.++.++..+..+++|
T Consensus 80 ~~~l~~L~L~~n~l~~-------lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSS-------CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchh-------cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 4678888888887742 223333333 8888888888777774 446788888888888887777777777888
Q ss_pred cEEecCCCcCcCCCCCC-------ccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCC
Q 043910 106 SQIITAARNFVTKTPNP-------SFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL 178 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L 178 (353)
+.|++++|+.+...+.. ..+..+++|++|++++|.. ..+|..+..+++|++|++++|.++.+|..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 88888877665544321 0133477788888877544 367777777778888888888777777777777788
Q ss_pred CEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccc
Q 043910 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 179 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~ 255 (353)
++|++++|+..+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++++++|+.+++..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88888877777777777777777888888777554 56666777777788888777655 6777777777777777765
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.1e-25 Score=223.98 Aligned_cols=217 Identities=18% Similarity=0.224 Sum_probs=88.3
Q ss_pred cceEeecccCCC-CCCCCC-C-CCCceEEEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEe
Q 043910 60 IRYLFWHGYPLK-SLPSIT-H-PAKLVLLEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135 (353)
Q Consensus 60 L~~L~l~~~~~~-~l~~~~-~-~~~L~~L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 135 (353)
|++|++++|.++ .+|... . +++|+.|++++|.+.+ ++..+..+++|+.|++++|.....++ ...+..+++|++|+
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLD 349 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEE
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEe
Confidence 444444444443 333221 2 2455555555555442 23334444555555555443211111 11244445555555
Q ss_pred ecCCCCCcccchhhhcCC-CccEEEccCccCc-ccCccccC--CCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCcc
Q 043910 136 LSGCSQLKRLPAEILSAG-NMEEMILNGTAIE-ELPSSIEC--LSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 136 l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~-~l~~~~~~--l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 211 (353)
+++|...+.+|..+..++ +|+.|++++|.++ .+|..+.. +++|++|++++|...+.+|..+..+++|+.|++++|.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 555443334444333333 3333333333333 22222222 3334444444333222334344444444444444444
Q ss_pred CC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCC
Q 043910 212 IT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHC 277 (353)
Q Consensus 212 i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c 277 (353)
++ .+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|.. +++|+.|++++|
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 43 33334444444444444444444 33444444444444444444333333321 234444444444
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.2e-25 Score=211.59 Aligned_cols=257 Identities=15% Similarity=0.181 Sum_probs=156.5
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~ 86 (353)
+++++.....+++..|..+++|++|++++|.+.+. .+..+..+. |++|++++|.++.++. +..+++|+.|+
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34455555667788888999999999999988642 223444555 9999999999888774 34789999999
Q ss_pred ccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCC-----------
Q 043910 87 VPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGN----------- 154 (353)
Q Consensus 87 L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------- 154 (353)
+++|.++.++... ..+++|+.|++++|. ++... ...+..+++|++|++++|...+ ++ +..+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCC-hhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCcc
Confidence 9999998887764 678999999999875 33333 3467888899999998875433 22 222233
Q ss_pred --------ccEEEccCccCcccC--------------------ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEE
Q 043910 155 --------MEEMILNGTAIEELP--------------------SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLI 206 (353)
Q Consensus 155 --------L~~L~l~~~~i~~l~--------------------~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 206 (353)
|+.|++++|.++.++ ..+..+++|++|++++|...+..|..++.+++|+.|+
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 333333333333222 2344455555555555443333344455555555555
Q ss_pred eeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCC
Q 043910 207 LNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 207 l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
+++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.....-...+++|+.|+++++
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 55555555554444555555555555555555555555555555555554322211223445555555554
No 16
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1e-24 Score=204.23 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=150.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++...++. .|..+++|++|++++|.+++. + +..+. |++|++++|.++.++ +..+++|+.|++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~--------~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL--------D-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC--------C-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE--------c-cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 3455655544543 578889999999999988652 1 33334 899999999888875 667889999999
Q ss_pred cCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcc
Q 043910 88 PHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE 167 (353)
Q Consensus 88 ~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 167 (353)
++|.++.++ +..+++|++|++++|. ++.+ .++.+++|++|++++|..++.+ .+..+++|+.|++++|.++.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEI----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCC----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-ccee----ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 999888864 6778889999998874 3333 2667888888888887666665 36677888888888888887
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccc
Q 043910 168 LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIP 239 (353)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~ 239 (353)
+| +..+++|++|++++|. ++.+ .++.+++|+.|++++|+++.+| +..+++|+.|++++|.+..++
T Consensus 185 l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 76 6777888888888754 4444 2677788888888888887776 667778888888888776544
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.9e-25 Score=216.95 Aligned_cols=280 Identities=17% Similarity=0.097 Sum_probs=226.8
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC 103 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~ 103 (353)
|..+++|++|++++|.+.. .+ .+.... |++|++++|.++.+|.+ .+++|+.|++++|...... ....++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~-------l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY-------LE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC-------CC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCT
T ss_pred cccCCCCCEEEecCccchh-------hh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch-hhccCC
Confidence 7889999999999998743 12 333344 99999999999999977 8999999999999544322 556889
Q ss_pred CccEEecCCCcCcCCCC-CCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc--cccCCCCCCE
Q 043910 104 KLSQIITAARNFVTKTP-NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLH 180 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~ 180 (353)
+|+.|++++|.. +... ....+..+++|++|++++|. +..+|..+..+++|+.|++++|.++..++ .+..+++|++
T Consensus 351 ~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 999999998853 2221 13467889999999999975 55577778899999999999999986644 7889999999
Q ss_pred EeccCCCCCcccCccccCCCCCCEEEeeCccCCc--cCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceecccccc
Q 043910 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ--LPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 181 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~ 257 (353)
|++++|......|..+..+++|++|++++|.++. +|..++.+++|+.|++++|.+..+ |..+.++++|+.|++++|.
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 9999987666677789999999999999999985 688899999999999999999855 5678899999999999986
Q ss_pred ccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHHHH
Q 043910 258 RLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDA 318 (353)
Q Consensus 258 ~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~ 318 (353)
..+..|. .+++|+.|++++|. ++.+|.. .....++|+.+++++++..++.....+..+.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSC-CCCEESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred CCCcCHHHccCCCcCCEEECCCCc-CcccCHh-HhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 5544454 35789999999985 8888876 3333346999999999998887776665553
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=6.1e-26 Score=221.24 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=201.6
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCC-CCC-CccceeecCCCCCC-CccceEeecccCCCCCCC---CCCCCCceE
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSS-ING-ENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLPS---ITHPAKLVL 84 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~---~~~~~~L~~ 84 (353)
+++++......+..|.++++|++|++++|. +++ ..|........+.. ..|++|++++|.++.+|. +..+++|+.
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCE
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCE
Confidence 344444334445667777777777777776 655 34332211101111 238888888888888876 557888888
Q ss_pred EEccCCCcc-ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCcc-CcEEeecCCCCCcccchhhhcCC--CccEEEc
Q 043910 85 LEVPHSNIQ-QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNK-LTILNLSGCSQLKRLPAEILSAG--NMEEMIL 160 (353)
Q Consensus 85 L~L~~~~i~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l 160 (353)
|++++|.++ .++ .+..+++|+.|++++|.. +.+ +..+..+++ |++|++++|... .+|..+..+. +|+.|++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l-~~l--p~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEI--PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEE-EEC--CTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCcc-ccc--cHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence 888888888 566 667778888888887753 333 235777788 888888886544 7777665544 7888888
Q ss_pred cCccCc-ccCcccc-------CCCCCCEEeccCCCCCcccCcc-ccCCCCCCEEEeeCccCCccCcccCC--------CC
Q 043910 161 NGTAIE-ELPSSIE-------CLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQ--------LF 223 (353)
Q Consensus 161 ~~~~i~-~l~~~~~-------~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~--------l~ 223 (353)
++|.++ .+|..+. .+++|++|++++|. ++.+|.. +..+++|+.|++++|.++.+|..... ++
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred cCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 888887 4555666 67788999998854 5567754 45688999999999998877765433 23
Q ss_pred CCcEEEeeCCCCcccchhHh--hccCCceeccccccccccCCCC---CCCcceeecCC------CcCccccCcccccccc
Q 043910 224 SLEEFCLRKTKFEKIPTNVI--HLSRLHSFCLSYCERLQSLPKL---PCNLKELDADH------CAALESLSDLFSISYD 292 (353)
Q Consensus 224 ~L~~L~l~~~~l~~l~~~l~--~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~------c~~l~~~~~~~~~~~~ 292 (353)
+|+.|++++|.+..+|..+. .+++|+.|++++|.. +.+|.. +++|+.|++++ +.-.+.+|.... .+
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l 565 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT--LC 565 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG--GC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CCcChhhhcCCCCCEEECCCCcccccCcccccChHHHh--cC
Confidence 89999999999998888876 899999999999654 447753 57899999954 433445554333 37
Q ss_pred ccccEEEecCCcc
Q 043910 293 YYIRCFELSTNYK 305 (353)
Q Consensus 293 ~~l~~l~~~~c~~ 305 (353)
++|+.|++++|.-
T Consensus 566 ~~L~~L~Ls~N~l 578 (636)
T 4eco_A 566 PSLTQLQIGSNDI 578 (636)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCCCEEECCCCcC
Confidence 8899999999954
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.2e-24 Score=192.75 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=122.9
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCcccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|++++|.++.++. +..+++|++|++++|.++.+ +..+..+++|++|++++|. ++.++. .+ .++|++|++
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~--~~--~~~L~~L~l 128 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPE--KM--PKTLQELRV 128 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCS--SC--CTTCCEEEC
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccCh--hh--cccccEEEC
Confidence 6666666666665553 33556666666666666554 3445556666666666553 222221 11 145666666
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCc---ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIE---ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 213 (353)
++|...+..+..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++.+|..+. ++|+.|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCC
Confidence 665443333334555666666666666554 22334555666666666653 2444444322 55666666666655
Q ss_pred cc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCcccc
Q 043910 214 QL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFS 288 (353)
Q Consensus 214 ~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~ 288 (353)
.+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++| .++.+|.. +++|+.|++++| .++.++...+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 43 3445555666666666666554332 4555566666666654 33344432 245566666654 3555544333
Q ss_pred cc-----ccccccEEEecCCcc
Q 043910 289 IS-----YDYYIRCFELSTNYK 305 (353)
Q Consensus 289 ~~-----~~~~l~~l~~~~c~~ 305 (353)
.. ....++.+++.+++.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSS
T ss_pred CCcccccccccccceEeecCcc
Confidence 21 123455556655543
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.7e-24 Score=194.72 Aligned_cols=235 Identities=13% Similarity=0.144 Sum_probs=122.4
Q ss_pred cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
|++|++++|.++.++ .+..+++|+.|++++|.+..++.... ++|++|++++|. ++..+ ...+..+++|++|+++
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECC
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccC-HhHhCCCccCCEEECC
Confidence 555555555555442 23345555555555555555444333 555555555543 22221 1235555666666666
Q ss_pred CCCCCc--ccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc
Q 043910 138 GCSQLK--RLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL 215 (353)
Q Consensus 138 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~ 215 (353)
+|.... ..+..+..+ +|+.|++++|.++.+|..+. ++|++|++++|......+..+..+++|+.|++++|.++.+
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 544321 233334444 56666666666655554432 5666666666443333334566666677777777666654
Q ss_pred Cc-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCC----------CCCcceeecCCCcCcc-cc
Q 043910 216 PE-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKL----------PCNLKELDADHCAALE-SL 283 (353)
Q Consensus 216 ~~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~----------~~~L~~L~l~~c~~l~-~~ 283 (353)
+. .+..+++|+.|++++|.+..+|..+..+++|+.|++++|. ++.++.. ...|+.|++.+++-.. .+
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccccc
Confidence 43 4566666777777777666666666666677777776643 3333310 2346666666664321 22
Q ss_pred CccccccccccccEEEecCC
Q 043910 284 SDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 284 ~~~~~~~~~~~l~~l~~~~c 303 (353)
+... ...++.++.+++++|
T Consensus 312 ~~~~-~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 312 QPAT-FRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGG-GTTBCCSTTEEC---
T ss_pred Cccc-ccccchhhhhhcccc
Confidence 2221 123555666666655
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=207.84 Aligned_cols=291 Identities=13% Similarity=0.080 Sum_probs=176.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCC--C-CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSL--P-SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~-~~~~~~~L~~L 85 (353)
.++++++....+.+++|.++++|++|++++|.++. . +.. ....|++|++++|.++.+ | .+..+++|+.|
T Consensus 49 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l------p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 49 ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I------SCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp EEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-E------ECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred EEecCCCccCCcChHHhhcccCCCEEecCCCceee-c------Ccc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 45677777777778899999999999999999863 2 222 334499999999998864 4 45578999999
Q ss_pred EccCCCccccCCCCcCCCCc--cEEecCCCcC--cCCC----CC--------------------CccccCC---------
Q 043910 86 EVPHSNIQQLGDGGQHHCKL--SQIITAARNF--VTKT----PN--------------------PSFIRSL--------- 128 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~~L--~~L~l~~~~~--l~~~----~~--------------------~~~~~~l--------- 128 (353)
++++|.+... .+..+++| +.|++++|.. .... .. ...+..+
T Consensus 121 ~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 121 GLSTTHLEKS--SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EEEESSCCGG--GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred EecCcccchh--hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 9999988652 33445555 6666665533 0000 00 0000111
Q ss_pred ------------------------------------------------ccCcEEeecCCCCCcccchhh-----------
Q 043910 129 ------------------------------------------------NKLTILNLSGCSQLKRLPAEI----------- 149 (353)
Q Consensus 129 ------------------------------------------------~~L~~L~l~~~~~~~~~~~~~----------- 149 (353)
++|++|++++|...+.+|..+
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 134444444433322333322
Q ss_pred ------------------------------------------hcCCCccEEEccCccCcc-cCccccCCCCCCEEeccCC
Q 043910 150 ------------------------------------------LSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDC 186 (353)
Q Consensus 150 ------------------------------------------~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~ 186 (353)
..+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 344555666666665553 4555555666666666654
Q ss_pred CCCc--ccCccccCCCCCCEEEeeCccCCc-cCcc-cCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc
Q 043910 187 KRLK--SLPKGLCKLKSLKFLILNGCGITQ-LPEN-LGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 187 ~~~~--~l~~~~~~l~~L~~L~l~~~~i~~-~~~~-~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
...+ .+|..+..+++|++|++++|.++. +|.. +..+++|++|++++|.+. .++..+. ++|+.|++++| .++.
T Consensus 359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ 435 (520)
T 2z7x_B 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKS 435 (520)
T ss_dssp CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCC
T ss_pred ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccc
Confidence 3322 233445566666666666666654 5543 455566666666666654 3333221 56777777765 3456
Q ss_pred CCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhH
Q 043910 262 LPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 262 l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
+|. .+++|+.|++++| .++.++.. ....+++|+.+++++++.-++......
T Consensus 436 ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred cchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCCCcccCCchHH
Confidence 665 3467888888887 57777765 223467899999999988887776665
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.3e-24 Score=202.69 Aligned_cols=169 Identities=21% Similarity=0.279 Sum_probs=86.4
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
+..+++|++|++++|...+..+ +..+++|+.|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSE
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCE
Confidence 3344444444444433222211 334455555555555554442 34455556666665543 222332 555666666
Q ss_pred EEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC-CCCCCcceeecCCCcCcccc
Q 043910 205 LILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-KLPCNLKELDADHCAALESL 283 (353)
Q Consensus 205 L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~c~~l~~~ 283 (353)
|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++++|...+..+ ..+++|+.|++++| .++.+
T Consensus 270 L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 270 LKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred EECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCc
Confidence 6666666655544 5556666666666666665444 4566666666666653222111 13456666666665 34444
Q ss_pred CccccccccccccEEEecCCc
Q 043910 284 SDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 284 ~~~~~~~~~~~l~~l~~~~c~ 304 (353)
+. ...+++|+.+++++|.
T Consensus 347 ~~---l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 347 SS---LANLTNINWLSAGHNQ 364 (466)
T ss_dssp GG---GTTCTTCCEEECCSSC
T ss_pred hh---hccCCCCCEEeCCCCc
Confidence 21 2334566666666663
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.4e-24 Score=213.51 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=208.8
Q ss_pred EeCCCccccccCH-HHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC-CCCCCC-ceEE
Q 043910 10 LDMSKVEEIHLYS-DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS-ITHPAK-LVLL 85 (353)
Q Consensus 10 l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~-~~~~~~-L~~L 85 (353)
++++++....++. ..|.++++|++|++++|.++ .. + .+..++ |+.|++++|.+..+|. +..+++ |+.|
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l------p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL------E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BC------C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cc------h-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 3444444444443 46777888888888887774 22 2 344444 8888888888887774 446777 8888
Q ss_pred EccCCCccccCCCCcCCC--CccEEecCCCcCcCCCCCCc-ccc--CCccCcEEeecCCCCCcccchhhh-cCCCccEEE
Q 043910 86 EVPHSNIQQLGDGGQHHC--KLSQIITAARNFVTKTPNPS-FIR--SLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMI 159 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~~~-~~~--~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 159 (353)
++++|.++.++..+.... +|+.|++++|......+..+ .+. .+++|++|++++|... .+|..+. .+++|+.|+
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTII 703 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEE
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEE
Confidence 888888887776555543 48888888875432222111 222 3458999999997655 7776654 789999999
Q ss_pred ccCccCcccCccccCC--------CCCCEEeccCCCCCcccCcccc--CCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 160 LNGTAIEELPSSIECL--------SRLLHLGLRDCKRLKSLPKGLC--KLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 160 l~~~~i~~l~~~~~~l--------~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
+++|.++.+|..+... ++|++|++++| .++.+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus 704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred CCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence 9999999888765443 38999999996 4668898776 99999999999999999999999999999999
Q ss_pred eeC------CCCc-ccchhHhhccCCceeccccccccccCCC-CCCCcceeecCCCcCccccCcccccc-------cccc
Q 043910 230 LRK------TKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAALESLSDLFSIS-------YDYY 294 (353)
Q Consensus 230 l~~------~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~~-------~~~~ 294 (353)
+++ |.+. .+|..+.++++|+.|++++|.. +.+|. ..++|+.|++++|+ +..+....+.. .+..
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~ 860 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLY 860 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEEC
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC-CCccChHHccccccchheeecC
Confidence 987 5555 7888999999999999999865 88887 45789999999986 54444333221 1111
Q ss_pred ccEEEecCCccCc
Q 043910 295 IRCFELSTNYKLD 307 (353)
Q Consensus 295 l~~l~~~~c~~l~ 307 (353)
....++.+|+.+.
T Consensus 861 n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 861 DKTQDIRGCDALG 873 (876)
T ss_dssp CTTSEEESCGGGC
T ss_pred CCccccCCCCCcc
Confidence 2234677888765
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.9e-25 Score=213.10 Aligned_cols=134 Identities=16% Similarity=0.052 Sum_probs=93.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.+.+|.++++|++|++++|.+++. .+..+..+. |++|++++|.++.++. +..+++|++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI------EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCcc------ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 456666666667677888899999999999888642 223444455 8999999998887774 5578889999
Q ss_pred EccCCCcccc--CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh
Q 043910 86 EVPHSNIQQL--GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI 149 (353)
Q Consensus 86 ~L~~~~i~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 149 (353)
++++|.++.+ +..+..+++|++|++++|..++.++ ...+..+++|++|++++|...+..|..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhh
Confidence 9998888754 4566778888888888876444432 2345666677777776665544444333
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.4e-25 Score=198.58 Aligned_cols=247 Identities=16% Similarity=0.167 Sum_probs=201.1
Q ss_pred CCCcEEEeeeCCCCC--CccceeecCCCCCCCc-cceEeecc-cCCC-CCC-CCCCCCCceEEEccCCCcc-ccCCCCcC
Q 043910 29 RKLRFLKFYNSSING--ENKCKVSNIQDPVFPE-IRYLFWHG-YPLK-SLP-SITHPAKLVLLEVPHSNIQ-QLGDGGQH 101 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~-L~~L~l~~-~~~~-~l~-~~~~~~~L~~L~L~~~~i~-~l~~~~~~ 101 (353)
.++++|++++|.+.+ ..+ ..+..++ |++|++++ +.+. .+| .+..+++|++|++++|.+. .++..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~------~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP------SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC------GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccC------hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 578999999998876 333 3344444 99999995 7655 556 3558899999999999998 56677888
Q ss_pred CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCC-CccEEEccCccCc-ccCccccCCCCCC
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAG-NMEEMILNGTAIE-ELPSSIECLSRLL 179 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~-~l~~~~~~l~~L~ 179 (353)
+++|++|++++|...... +..+..+++|++|++++|...+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+
T Consensus 124 l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp CTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CCCCCEEeCCCCccCCcC--ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 999999999988542222 35788899999999999877778888898888 9999999999998 7788888887 99
Q ss_pred EEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceeccccccc
Q 043910 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 180 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
+|++++|......|..+..+++|+.|++++|.++..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|..
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 999999765556777888999999999999999865555888899999999999998 7888899999999999999877
Q ss_pred cccCCCC--CCCcceeecCCCcCccccC
Q 043910 259 LQSLPKL--PCNLKELDADHCAALESLS 284 (353)
Q Consensus 259 l~~l~~~--~~~L~~L~l~~c~~l~~~~ 284 (353)
.+.+|.. +++|+.+++.+++.+...|
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred cccCCCCccccccChHHhcCCCCccCCC
Confidence 7677764 4678888898887666543
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.2e-25 Score=198.91 Aligned_cols=213 Identities=26% Similarity=0.362 Sum_probs=169.4
Q ss_pred ccceEeecccCCCCCCC-CCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 59 EIRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
.++.|+++++.++.+|. +..+++|++|++++|.++.++..+..+++|++|++++|. ++.+ +..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~l--p~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRAL--PASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCC--CGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccC--cHHHhcCcCCCEEECC
Confidence 38889999998888884 557889999999999888888878888899999998874 3333 3468888899999999
Q ss_pred CCCCCcccchhhhc---------CCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEee
Q 043910 138 GCSQLKRLPAEILS---------AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILN 208 (353)
Q Consensus 138 ~~~~~~~~~~~~~~---------~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 208 (353)
+|+..+.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|. ++.+|..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECc
Confidence 88888888776654 888888888888888888888888888888888854 55677778888888888888
Q ss_pred CccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceeccccccccccCCCCC---CCcceeecC
Q 043910 209 GCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPKLP---CNLKELDAD 275 (353)
Q Consensus 209 ~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~ 275 (353)
+|.+. .+|..++.+++|+.|++++|.+. .+|..+.++++|+.|++++|+.++.+|..+ ++|+.+++.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 88665 67777888888888888888765 777778888888888888888888888754 344444444
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.8e-24 Score=202.79 Aligned_cols=266 Identities=16% Similarity=0.111 Sum_probs=199.7
Q ss_pred EeCCCcccc-ccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCC--CCC--CCCCCCce
Q 043910 10 LDMSKVEEI-HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKS--LPS--ITHPAKLV 83 (353)
Q Consensus 10 l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~--l~~--~~~~~~L~ 83 (353)
++++++... .+.+++|.++++|++|++++|.+++. .+..+..+. |++|++++|.++. ++. +..+++|+
T Consensus 59 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred EECcCCcccceECcccccccccCCEEeCCCCccCcc------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 455555433 55677888999999999999988542 234455455 9999999998775 222 55788999
Q ss_pred EEEccCCCccccCCC--CcCCCCccEEecCCCcCcCCCCCCcc----------------------------------ccC
Q 043910 84 LLEVPHSNIQQLGDG--GQHHCKLSQIITAARNFVTKTPNPSF----------------------------------IRS 127 (353)
Q Consensus 84 ~L~L~~~~i~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~----------------------------------~~~ 127 (353)
.|++++|.+..+.+. +..+++|++|++++|.. +... ... +..
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccC-hhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 999999998877443 56788999999988753 2221 111 224
Q ss_pred CccCcEEeecCCCCCcccchhhhc---------------------------------------CCCccEEEccCccCcc-
Q 043910 128 LNKLTILNLSGCSQLKRLPAEILS---------------------------------------AGNMEEMILNGTAIEE- 167 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------------~~~L~~L~l~~~~i~~- 167 (353)
+++|++|++++|...+..|..+.. .++|+.|++++|.++.
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 468999999998765544433321 2579999999999985
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCccc-chhHhhc
Q 043910 168 LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKI-PTNVIHL 245 (353)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l 245 (353)
.|..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+..+ |..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 466788999999999999765555566889999999999999999866 56788999999999999999965 6688899
Q ss_pred cCCceeccccccccccCCC----CCCCcceeecCCCcCccccC
Q 043910 246 SRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLS 284 (353)
Q Consensus 246 ~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~ 284 (353)
++|++|++++|. ++.+|. .+++|+.|++++++--.+.+
T Consensus 371 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999964 555554 35789999999886544444
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.9e-24 Score=192.14 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=203.0
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC-C-CCCCCCCceEEEccCCCccccCCCCcCCCC
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL-P-SITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l-~-~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~ 104 (353)
.+++++|++++|.+++.. ...+.... |++|++++|.++.+ | .+..+++|+.|++++|.++.++.... ++
T Consensus 51 ~~~l~~L~L~~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIK------DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CTTCCEEECCSSCCCCBC------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCeEEECCCCcCCEeC------hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 368999999999986532 22344444 99999999999887 4 35588999999999999998876554 89
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCc--ccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEe
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLK--RLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLG 182 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 182 (353)
|+.|++++|. ++... ...+..+++|++|++++|.... ..+..+..+++|++|++++|.++.+|..+. ++|++|+
T Consensus 123 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp CCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEE
T ss_pred ccEEECCCCc-ccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEE
Confidence 9999999874 33332 2357889999999999976643 456678889999999999999999887654 8999999
Q ss_pred ccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccccccc
Q 043910 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 183 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
+++|......+..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+..+|..+..+++|++|++++|. ++.
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~ 277 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISA 277 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCc
Confidence 99976444446788999999999999999997654 6888999999999999999999989999999999999964 555
Q ss_pred CCC-C---------CCCcceeecCCCcCcc-ccCccccccccccccEEEecCC
Q 043910 262 LPK-L---------PCNLKELDADHCAALE-SLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 262 l~~-~---------~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~l~~l~~~~c 303 (353)
++. . ...++.+++.+++--. .++... ...+..++.++++++
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~-f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST-FRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG-GTTCCCGGGEEC---
T ss_pred cChhhcCCcccccccccccceEeecCcccccccCccc-cccccceeEEEeccc
Confidence 542 1 2578899999886322 122222 233567788888765
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.9e-24 Score=206.10 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=104.8
Q ss_pred hhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc-cCcccCCCCCCc
Q 043910 149 ILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ-LPENLGQLFSLE 226 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~ 226 (353)
+..+++|++|++++|.++.++..+..+++|++|++++|......+ ..+..+++|++|++++|.+.. .|..+..+++|+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 334444555555555554444445556666666666544332223 245667777777777777663 455667777888
Q ss_pred EEEeeCCCCc--ccchhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEec
Q 043910 227 EFCLRKTKFE--KIPTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELS 301 (353)
Q Consensus 227 ~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~ 301 (353)
.|++++|.+. .+|..+..+++|+.|++++|......|. .+++|+.|++++| .++.++...+ ..+++|+.++++
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~ 526 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLH 526 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECC
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEec
Confidence 8888888775 4666777788888888888754444343 3467888888887 4666654433 346788999999
Q ss_pred CCccCchHHHHhHH
Q 043910 302 TNYKLDRNELRSIL 315 (353)
Q Consensus 302 ~c~~l~~~~~~~~~ 315 (353)
+++.-+........
T Consensus 527 ~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 527 TNPWDCSCPRIDYL 540 (570)
T ss_dssp SSCBCCCTTTTHHH
T ss_pred CCcccCCCcchHHH
Confidence 98777665544433
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.1e-23 Score=207.24 Aligned_cols=184 Identities=22% Similarity=0.181 Sum_probs=98.4
Q ss_pred cccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcc---------------------------cCccccCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEE---------------------------LPSSIECL 175 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~---------------------------l~~~~~~l 175 (353)
.+..+++|++|++++|...+.++ ..+..+++|++|++++|.++. +|..+..+
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 45556666666666655444443 344555555555555555442 23344455
Q ss_pred CCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc---------ccCCCCCCcEEEeeCCCCcccch-hHhh
Q 043910 176 SRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE---------NLGQLFSLEEFCLRKTKFEKIPT-NVIH 244 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~---------~~~~l~~L~~L~l~~~~l~~l~~-~l~~ 244 (353)
++|++|++++|. ++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+|. .+.+
T Consensus 480 ~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 480 RNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 555555555533 23333 335555566666666665553311 14555666666666666665554 3556
Q ss_pred ccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 245 LSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 245 l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
+++|+.|++++| .++.+|. .+++|+.|+++++ .++.++...+....++++.+++++++..++..
T Consensus 559 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 559 LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 666666666653 3444443 2356666666665 45555543332234566777777766665543
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.2e-25 Score=196.36 Aligned_cols=244 Identities=18% Similarity=0.178 Sum_probs=198.9
Q ss_pred EEeCCCccccc--cCHHHHhcCCCCcEEEeee-CCCCCCccceeecCCCCCCCc-cceEeecccCCC-CCCC-CCCCCCc
Q 043910 9 CLDMSKVEEIH--LYSDTFTKMRKLRFLKFYN-SSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK-SLPS-ITHPAKL 82 (353)
Q Consensus 9 ~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~-~l~~-~~~~~~L 82 (353)
.++++++.... ..+..|.++++|++|++++ |.+.+..+. .+..++ |++|++++|.++ .+|. +..+++|
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP------AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG------GGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh------hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 34455554443 4567899999999999995 887665442 333344 999999999987 6664 5589999
Q ss_pred eEEEccCCCcc-ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCc-cCcEEeecCCCCCcccchhhhcCCCccEEEc
Q 043910 83 VLLEVPHSNIQ-QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN-KLTILNLSGCSQLKRLPAEILSAGNMEEMIL 160 (353)
Q Consensus 83 ~~L~L~~~~i~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 160 (353)
++|++++|.+. .++..+..+++|++|++++|...... +..+..++ +|++|++++|...+..|..+..+. |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 99999999998 46677888999999999998542122 34677887 999999999887778888888887 999999
Q ss_pred cCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-c
Q 043910 161 NGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-K 237 (353)
Q Consensus 161 ~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~ 237 (353)
++|.++ ..|..+..+++|++|++++|......|. +..+++|++|++++|.++ .+|..+..+++|+.|++++|++. .
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 999998 5667788999999999999765444444 788999999999999998 78888999999999999999998 6
Q ss_pred cchhHhhccCCceeccccccccccCC
Q 043910 238 IPTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 238 l~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
+|.. ..+++|+.+++++|+.+...|
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCC-ccccccChHHhcCCCCccCCC
Confidence 7765 889999999999998776544
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=5.8e-24 Score=204.64 Aligned_cols=291 Identities=17% Similarity=0.118 Sum_probs=200.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC---CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP---SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~---~~~~~~~L~~L 85 (353)
.++++++....+.+++|.++++|++|++++|.++. .+.. ....|++|++++|.++.++ .+..+++|+.|
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-------ISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-------ECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-------cCcc-ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 45677777778888999999999999999999852 2222 3344999999999998765 35588999999
Q ss_pred EccCCCccccCCCCcCCCCc--cEEecCCCcCc-CCCCCCccc--------------------------cCCc-------
Q 043910 86 EVPHSNIQQLGDGGQHHCKL--SQIITAARNFV-TKTPNPSFI--------------------------RSLN------- 129 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~~L--~~L~l~~~~~l-~~~~~~~~~--------------------------~~l~------- 129 (353)
++++|.++.. .+..+++| +.|++++|... +... ...+ ..++
T Consensus 152 ~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 152 GLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp EEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS-CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred ecCCCccccC--chhhhhhceeeEEEeecccccccccC-cccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence 9999998753 34445555 88887776430 1110 0111 1122
Q ss_pred ------------------------------------------------cCcEEeecCCCCCcccchhh------------
Q 043910 130 ------------------------------------------------KLTILNLSGCSQLKRLPAEI------------ 149 (353)
Q Consensus 130 ------------------------------------------------~L~~L~l~~~~~~~~~~~~~------------ 149 (353)
+|++|++++|...+.+|..+
T Consensus 229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 45555555544333333322
Q ss_pred -----------------------------------------hcCCCccEEEccCccCcc-cCccccCCCCCCEEeccCCC
Q 043910 150 -----------------------------------------LSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDCK 187 (353)
Q Consensus 150 -----------------------------------------~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~ 187 (353)
..+++|++|++++|.++. +|..+..+++|++|++++|.
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 456678888888887774 66677778888888888754
Q ss_pred CCccc---CccccCCCCCCEEEeeCccCCc-cCcc-cCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc
Q 043910 188 RLKSL---PKGLCKLKSLKFLILNGCGITQ-LPEN-LGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 188 ~~~~l---~~~~~~l~~L~~L~l~~~~i~~-~~~~-~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
++.+ |..+..+++|+.|++++|.++. +|.. +..+++|++|++++|.+. .++..+. ++|+.|++++| .++.
T Consensus 389 -l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 389 -LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS 464 (562)
T ss_dssp -CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC
T ss_pred -cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc
Confidence 4433 3456778888888888888775 6653 667788888888888876 3343322 68889999886 5667
Q ss_pred CCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHH
Q 043910 262 LPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILE 316 (353)
Q Consensus 262 l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~ 316 (353)
+|.. +++|+.|+++++ .++.++.. ....+++|+.+++++++.-++........
T Consensus 465 ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp CCTTTTSSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred cChhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 7763 478999999987 57788766 23456789999999999888877666544
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=4.2e-24 Score=207.41 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=197.5
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|+.++++++.++.+|.+..+++|+.|++++|.+..++ .+ .+++|+.|++++|..+... .+..+++|++|++++|
T Consensus 287 L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN 360 (606)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS
T ss_pred CCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch----hhccCCCCCEEECcCC
Confidence 8899999999998887778899999999999998777 44 8999999999998654432 4668899999999997
Q ss_pred CCCcc--cchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc-c
Q 043910 140 SQLKR--LPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ-L 215 (353)
Q Consensus 140 ~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~-~ 215 (353)
...+. .+..+..+++|++|++++|.++.+|..+..+++|++|++++|...+..| ..+..+++|+.|++++|.+.. .
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 65443 3777889999999999999999999889999999999999976555555 478899999999999999884 6
Q ss_pred CcccCCCCCCcEEEeeCCCCcc--cchhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCcccccc
Q 043910 216 PENLGQLFSLEEFCLRKTKFEK--IPTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSIS 290 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~ 290 (353)
|..+..+++|++|++++|.+.. +|..+..+++|+.|++++|...+..|. .+++|++|++++|. ++.+....+ .
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~ 518 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHY-N 518 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGT-T
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHc-c
Confidence 6778999999999999999884 677889999999999999865544444 35789999999984 555533222 3
Q ss_pred ccccccEEEecCCccCc
Q 043910 291 YDYYIRCFELSTNYKLD 307 (353)
Q Consensus 291 ~~~~l~~l~~~~c~~l~ 307 (353)
.+++|+.|++++|. ++
T Consensus 519 ~l~~L~~L~l~~N~-l~ 534 (606)
T 3vq2_A 519 QLYSLSTLDCSFNR-IE 534 (606)
T ss_dssp TCTTCCEEECTTSC-CC
T ss_pred CCCcCCEEECCCCc-Cc
Confidence 46789999999994 44
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.5e-24 Score=192.65 Aligned_cols=259 Identities=18% Similarity=0.214 Sum_probs=199.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.++++++....+.+++|.++++|++|++++|.+++.. +..+..+. |++|++++|.++.+|.... ++|+.|++
T Consensus 58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l 130 (332)
T 2ft3_A 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH------EKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRI 130 (332)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------GGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEEC
T ss_pred EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC------HhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEEC
Confidence 3567777767777888999999999999999986432 33344444 9999999999999886554 89999999
Q ss_pred cCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc
Q 043910 88 PHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE 166 (353)
Q Consensus 88 ~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 166 (353)
++|.++.++.. +..+++|+.|++++|..-........+..+ +|++|++++|. +..+|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCC
Confidence 99999988764 567999999999988542111223456666 99999999965 445665443 79999999999999
Q ss_pred ccC-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchh-Hhh
Q 043910 167 ELP-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTN-VIH 244 (353)
Q Consensus 167 ~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~ 244 (353)
.++ ..+..+++|++|++++|......+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++.. +..
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 765 578899999999999965444444578899999999999999999999899999999999999999877642 222
Q ss_pred ------ccCCceeccccccccc-cCC-C---CCCCcceeecCCCc
Q 043910 245 ------LSRLHSFCLSYCERLQ-SLP-K---LPCNLKELDADHCA 278 (353)
Q Consensus 245 ------l~~L~~L~l~~~~~l~-~l~-~---~~~~L~~L~l~~c~ 278 (353)
.+.|+.+++++|+... .++ . .+++|+.+++++++
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4678999999986431 222 2 34678888888764
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2e-23 Score=200.23 Aligned_cols=157 Identities=20% Similarity=0.153 Sum_probs=92.2
Q ss_pred cCCCccEEEccCccCcc-cC---ccccCCCCCCEEeccCCCCCcccC---ccccCCCCCCEEEeeCccCCccCcccCCCC
Q 043910 151 SAGNMEEMILNGTAIEE-LP---SSIECLSRLLHLGLRDCKRLKSLP---KGLCKLKSLKFLILNGCGITQLPENLGQLF 223 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~-l~---~~~~~l~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~ 223 (353)
.+++|++|++++|.++. +| ..+..+++|++|++++|. ++.++ ..+..+++|++|++++|.++.+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 45566666666665552 22 124455556666665533 33322 234455555555555555555555555555
Q ss_pred CCcEEEeeCCCCcccchhH------------------hhccCCceeccccccccccCCC--CCCCcceeecCCCcCcccc
Q 043910 224 SLEEFCLRKTKFEKIPTNV------------------IHLSRLHSFCLSYCERLQSLPK--LPCNLKELDADHCAALESL 283 (353)
Q Consensus 224 ~L~~L~l~~~~l~~l~~~l------------------~~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~ 283 (353)
+|++|++++|.+..++..+ ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~ 488 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSV 488 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCC
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCc
Confidence 5555555555544333221 35677888888876 4556665 3577888888887 46666
Q ss_pred CccccccccccccEEEecCCccCchHHH
Q 043910 284 SDLFSISYDYYIRCFELSTNYKLDRNEL 311 (353)
Q Consensus 284 ~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 311 (353)
+.... ..+++|+.+++++|+..++...
T Consensus 489 ~~~~~-~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 489 PDGIF-DRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTGG-GGCTTCCEEECCSSCBCCCHHH
T ss_pred CHHHH-hcCcccCEEEecCCCccCCCcc
Confidence 55432 3467899999999988777663
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.7e-23 Score=195.41 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=158.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+++|+.|++++|.+..++ .+..+++|+.|++++|. ++ ....++.+++|++|++++|.. ..++ .+..+++|+.|
T Consensus 176 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~---~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L 248 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ-IS---DITPLGILTNLDELSLNGNQL-KDIG-TLASLTNLTDL 248 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CC---CCGGGGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEE
T ss_pred CCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc-cc---ccccccccCCCCEEECCCCCc-ccch-hhhcCCCCCEE
Confidence 444555555555554442 24455666666666653 22 223477889999999999754 3444 47889999999
Q ss_pred EccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc
Q 043910 159 ILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 159 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l 238 (353)
++++|.++.+++ +..+++|++|++++|. +..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..+
T Consensus 249 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 249 DLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred ECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 999999997765 7889999999999864 555555 7889999999999999998776 78899999999999999876
Q ss_pred chhHhhccCCceeccccccccccCCC--CCCCcceeecCCCcCccccCccccccccccccEEEecCCccC
Q 043910 239 PTNVIHLSRLHSFCLSYCERLQSLPK--LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKL 306 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l 306 (353)
+. +..+++|+.|++++|. ++.++. .+++|+.|++++|. +++.+. ...+++|+.+++.+|+..
T Consensus 325 ~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 325 SP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEEEE
T ss_pred hh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCccc
Confidence 65 6789999999999974 444443 45789999999985 555544 345688999999998543
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=3.1e-23 Score=202.03 Aligned_cols=304 Identities=20% Similarity=0.185 Sum_probs=210.5
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.+.+|.++++|++|++++|.+++. .+..+..+. |++|+|++|+++.+|. +..+++|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc------ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 567788877788888999999999999999988542 233455555 9999999999988874 4578999999
Q ss_pred EccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh---------------
Q 043910 86 EVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI--------------- 149 (353)
Q Consensus 86 ~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------- 149 (353)
++++|.++.++.. +..+++|++|++++|. ++.......++.+++|++|++++|...+..+..+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999999888754 5678999999999874 3334434567788888888888864322111110
Q ss_pred --------------------------------------------------------------------------------
Q 043910 150 -------------------------------------------------------------------------------- 149 (353)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (353)
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence
Q ss_pred -------------------------------------------------------------------------------h
Q 043910 150 -------------------------------------------------------------------------------L 150 (353)
Q Consensus 150 -------------------------------------------------------------------------------~ 150 (353)
.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 0
Q ss_pred cCCCccEEEccCccCcc---c-----------------------CccccCCCCCCEEecc--------------------
Q 043910 151 SAGNMEEMILNGTAIEE---L-----------------------PSSIECLSRLLHLGLR-------------------- 184 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~---l-----------------------~~~~~~l~~L~~L~l~-------------------- 184 (353)
.+++|+.+++++|.+.. . +..+..+++|+.+++.
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 11223333333332210 0 0111122333333332
Q ss_pred -----CCCCCcccCccccCCCCCCEEEeeCccCC--ccCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccc
Q 043910 185 -----DCKRLKSLPKGLCKLKSLKFLILNGCGIT--QLPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 185 -----~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~ 256 (353)
.|......+..+..+++|+.|++++|.+. ..|..+..+++|+.|++++|++..+ |..+.++++|+.|++++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 22211122334556778888888888643 3567788999999999999999966 557889999999999996
Q ss_pred cccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHHHHHHh
Q 043910 257 ERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQK 321 (353)
Q Consensus 257 ~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~ 321 (353)
.++.++. .+++|+.|+++++ .++.++...+...+++|+.|++++++.-++.....+..+.+..
T Consensus 529 -~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 529 -NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595 (635)
T ss_dssp -CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHT
T ss_pred -cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhC
Confidence 4555543 3578999999997 5777766655544578999999999999999888887776543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.9e-23 Score=195.62 Aligned_cols=263 Identities=15% Similarity=0.153 Sum_probs=203.7
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
++++++....+. +..+++|++|++++|.+++. + +..++ |++|++++|.++.++ +..+++|+.|+++
T Consensus 69 L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~--------~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 69 LICTSNNITTLD---LSQNTNLTYLACDSNKLTNL--------D-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCA 135 (457)
T ss_dssp EECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC--------C-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECT
T ss_pred EEccCCcCCeEc---cccCCCCCEEECcCCCCcee--------e-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECC
Confidence 455555544442 78899999999999998762 1 33344 999999999999886 6789999999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.+++++ +..+++|++|++++|..+... .+..+++|++|++++|.. +.+| +..+++|+.|++++|.++.+
T Consensus 136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 136 RNTLTEID--VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TSCCSCCC--CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCccceec--cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCee
Confidence 99999873 778999999999999765544 467889999999999754 4455 77899999999999999987
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-----------c
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-----------K 237 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-----------~ 237 (353)
+ +..+++|++|++++|. ++.+| +..+++|+.|++++|.++.+| ++.+++|+.|++++|.+. .
T Consensus 207 ~--l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 207 D--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred c--cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 4 7889999999999965 55576 789999999999999999776 445666666665555543 3
Q ss_pred cchhHhhccCCceeccccccccccCCCCCCCcceeecCCCcCccccCccc------cccccccccEEEecCC
Q 043910 238 IPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLF------SISYDYYIRCFELSTN 303 (353)
Q Consensus 238 l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~------~~~~~~~l~~l~~~~c 303 (353)
+| .+.+++|+.|++++|..++.+|.....|+.|++++|+.++.+.... ....+++|+.|+++++
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence 33 3578999999999998888877665666666666666555443211 1345778888888887
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.3e-23 Score=193.06 Aligned_cols=280 Identities=15% Similarity=0.139 Sum_probs=219.1
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~ 86 (353)
+++++.....++.. -.+++++|++++|.+++. .+..+...+ |++|++++|.++.++ .+..+++|+.|+
T Consensus 16 v~c~~~~l~~ip~~---~~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 16 VLCHRKRFVAVPEG---IPTETRLLDLGKNRIKTL------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp EECCSCCCSSCCSC---CCTTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEeCCCCcCcCCCC---CCCCCcEEECCCCccceE------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 34444443344432 246899999999998642 233455455 999999999988774 355899999999
Q ss_pred ccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccC
Q 043910 87 VPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAI 165 (353)
Q Consensus 87 L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 165 (353)
+++|.++.++.. +..+++|++|++++|.. +... ...+..+++|++|++++|......+..+..+++|+.|++++|.+
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCcc-ccCC-hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 999999998765 46799999999999854 3332 34688999999999999877666677788999999999999999
Q ss_pred cccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCcccch-hH
Q 043910 166 EELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFEKIPT-NV 242 (353)
Q Consensus 166 ~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l 242 (353)
+.++. .+..+++|+.|++++|......+..+..+++|+.|++++|... .++.......+|+.|++++|.+..++. .+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 98775 5788999999999997654444457889999999999998654 677666667799999999999998875 67
Q ss_pred hhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 243 IHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 243 ~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
..+++|+.|++++|. ++.++. .+++|+.|+++++ .++.+....+ ..+++|+.|++++|
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N 306 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF-RGLNYLRVLNVSGN 306 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTB-TTCTTCCEEECCSS
T ss_pred cCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHh-cCcccCCEEECCCC
Confidence 899999999999975 444432 3578999999997 4666544333 35788999999998
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=202.89 Aligned_cols=238 Identities=19% Similarity=0.190 Sum_probs=152.8
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~ 86 (353)
+|++++....+.+.+|.++++|++|++++|.+++. .+..+.... |++|++++|.++.++ .+..+++|+.|+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCcc------CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46666666666677788888888888888876531 223344444 888888888877665 344778888888
Q ss_pred ccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCc----cEEEcc
Q 043910 87 VPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNM----EEMILN 161 (353)
Q Consensus 87 L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~ 161 (353)
+++|.++.++. .+..+++|++|++++|. ++.+..+..++.+++|++|++++|...+..+..+..+++| +.++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 88888877664 46677888888888764 3332224567778888888888876555555556666666 677777
Q ss_pred CccCcccCccccCCCCCCEEeccCCCC-----------------------------------------------------
Q 043910 162 GTAIEELPSSIECLSRLLHLGLRDCKR----------------------------------------------------- 188 (353)
Q Consensus 162 ~~~i~~l~~~~~~l~~L~~L~l~~~~~----------------------------------------------------- 188 (353)
+|.++.+++......+|++|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 777765544322223455555554310
Q ss_pred -----CcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 189 -----LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 189 -----~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
....+..+..+++|+.|++++|.+..+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence 1112334555677777777777777777766666 77777777777665554 244555555555543
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=3.7e-23 Score=207.98 Aligned_cols=151 Identities=12% Similarity=0.038 Sum_probs=97.2
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC-C-CCCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL-P-SITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l-~-~~~~~~~L~~L~ 86 (353)
+|++++....+.+..|.++++|++|++++|...+.+ .+..+..++ |++|++++|.+..+ | .+..+++|+.|+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 455555555666677778888888888887554321 244455555 88888888887765 3 344778888888
Q ss_pred ccCCCccc-cCCC--CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcC--CCccEEEcc
Q 043910 87 VPHSNIQQ-LGDG--GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA--GNMEEMILN 161 (353)
Q Consensus 87 L~~~~i~~-l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~ 161 (353)
+++|.+.+ .+.. +..+++|++|++++|.. +.......++.+++|++|++++|...+..+..+..+ ++|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 88888775 3332 56678888888887643 333323467788888888888876655555555444 455555555
Q ss_pred CccCc
Q 043910 162 GTAIE 166 (353)
Q Consensus 162 ~~~i~ 166 (353)
+|.+.
T Consensus 183 ~n~l~ 187 (844)
T 3j0a_A 183 ANSLY 187 (844)
T ss_dssp CSBSC
T ss_pred CCccc
Confidence 55444
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.6e-23 Score=182.86 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=146.4
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCcccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|+++++.++.++. +..+++|+.|++++|.++.+ +..+..+++|++|++++|..++... ...+..+++|++|++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHL 112 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEEC
Confidence 7888888888776663 44678888888888888776 4456667888888888876555443 346777888888888
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~ 214 (353)
++|...+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++|.++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccc
Confidence 8876655556667778888888888888886665 36778888888888754 555553 57778888888888888875
Q ss_pred c-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccc
Q 043910 215 L-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 215 ~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~ 258 (353)
+ |..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 5 6677778888888888888886654 477788888888888654
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.8e-22 Score=198.51 Aligned_cols=285 Identities=16% Similarity=0.163 Sum_probs=191.0
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.+..|.++++|++|++++|.+++..+ ..+..+. |++|++++|.++.+|. +..+++|++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT------THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH------HHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 45667776677778889999999999999998866433 2222333 9999999999998885 5588999999
Q ss_pred EccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh--cCCCccEEEccC
Q 043910 86 EVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL--SAGNMEEMILNG 162 (353)
Q Consensus 86 ~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~ 162 (353)
++++|.++.++. .+..+++|++|++++|.. +... ...+..+++|++|++++|...+..+..+. .+++|+.|++++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcc-cccC-chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999988764 567789999999998853 3332 34677899999999999765554444443 457899999998
Q ss_pred ccCcccCc-cccCC---------------------------CCCCEEeccCCCCCcccCccccCCCC--CCEEEeeCccC
Q 043910 163 TAIEELPS-SIECL---------------------------SRLLHLGLRDCKRLKSLPKGLCKLKS--LKFLILNGCGI 212 (353)
Q Consensus 163 ~~i~~l~~-~~~~l---------------------------~~L~~L~l~~~~~~~~l~~~~~~l~~--L~~L~l~~~~i 212 (353)
|.++.+++ .+..+ ++|++|++++|...+..|..+..++. |+.|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 88875433 33322 45666666665544444555555543 88888888877
Q ss_pred CccC-cccCCCCCCcEEEeeCCCCcc-cchhHhhccCCceeccccccccc-----cCC-------CCCCCcceeecCCCc
Q 043910 213 TQLP-ENLGQLFSLEEFCLRKTKFEK-IPTNVIHLSRLHSFCLSYCERLQ-----SLP-------KLPCNLKELDADHCA 278 (353)
Q Consensus 213 ~~~~-~~~~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l~~~~~l~-----~l~-------~~~~~L~~L~l~~c~ 278 (353)
+.++ ..++.+++|+.|++++|.+.. .+..+.++++|+.|++++|..-. .+| ..+++|++|+++++.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 7543 457777888888888887763 34466677777777776543211 222 124566666666652
Q ss_pred CccccCccccccccccccEEEecCC
Q 043910 279 ALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 279 ~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
++.++...+ ..+++|+.+++++|
T Consensus 341 -l~~~~~~~~-~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 341 -IPGIKSNMF-TGLINLKYLSLSNS 363 (680)
T ss_dssp -BCCCCTTTT-TTCTTCCEEECTTC
T ss_pred -cCCCChhHh-ccccCCcEEECCCC
Confidence 333332221 23445555555554
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=9.8e-24 Score=187.51 Aligned_cols=216 Identities=20% Similarity=0.206 Sum_probs=119.8
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCcccc---CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEE
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQL---GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 134 (353)
+++|++++|.++.+|. +..+++|+.|++++|.++.. +.....+++|++|++++|.. +.. ...+..+++|++|
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l--~~~~~~l~~L~~L 106 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITM--SSNFLGLEQLEHL 106 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEE--EEEEETCTTCCEE
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccC--hhhcCCCCCCCEE
Confidence 6666666666666553 23566666666666666543 23334456666666666532 222 1235556666666
Q ss_pred eecCCCCCcccc-hhhhcCCCccEEEccCccCcc-cCccccCCCCCCEEeccCCCCCc-ccCccccCCCCCCEEEeeCcc
Q 043910 135 NLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDCKRLK-SLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 135 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~ 211 (353)
++++|...+..+ ..+..+++|++|++++|.++. .+..+..+++|++|++++|...+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666643322211 245556666666666666653 33345566666666666644332 245556666666666666666
Q ss_pred CCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCC----CCCcceeecCCCc
Q 043910 212 ITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKL----PCNLKELDADHCA 278 (353)
Q Consensus 212 i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~ 278 (353)
++.+ |..+..+++|++|++++|.+..++. .+..+++|+.|++++|...+..+.. +++|+.|++++++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6644 4455666666666666666664433 4555666666666665443333321 2356666666653
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.7e-23 Score=183.07 Aligned_cols=255 Identities=18% Similarity=0.187 Sum_probs=203.2
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCC-CccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPN-PSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~ 137 (353)
-+.++.+++.++.+|... .++|+.|++++|.++.++.. +..+++|+.|++++|.. +.... ...+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECC
Confidence 346777788888888643 47999999999999998875 46799999999998743 22210 1355678999999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCcccCc--cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCc-
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ- 214 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~- 214 (353)
+|. +..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.++.
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 964 45677778899999999999999997764 68899999999999976555566678899999999999999875
Q ss_pred -cCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCcccc
Q 043910 215 -LPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFS 288 (353)
Q Consensus 215 -~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~ 288 (353)
+|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|. ++.++. .+++|+.|++++|. ++.......
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 243 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL 243 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHHHH
Confidence 788899999999999999999966 5678899999999999975 444443 35799999999984 555544444
Q ss_pred ccccccccEEEecCCccCchHHHHhHHHHHH
Q 043910 289 ISYDYYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 289 ~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
...+++|+.+++++++.-.+.....+..+..
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 4344689999999998777776666666644
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-24 Score=190.21 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=162.1
Q ss_pred cCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC
Q 043910 20 LYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG 98 (353)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~ 98 (353)
.....+..+++|++|++++|.+++..+. .+.... |++|++++|.++.++++..+++|+.|++++|.+++++.
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~- 97 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAA------DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV- 97 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHH------HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHH------HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-
Confidence 3345556677888888888877653321 122233 88888888887766666677888888888888776542
Q ss_pred CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC-ccc-cCCC
Q 043910 99 GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP-SSI-ECLS 176 (353)
Q Consensus 99 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~-~~l~ 176 (353)
.++|+.|++++|.. +... ...+++|++|++++|......+..+..+++|++|++++|.++.++ ..+ ..++
T Consensus 98 ---~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 ---GPSIETLHAANNNI-SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp ---CTTCCEEECCSSCC-SEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ---CCCcCEEECCCCcc-CCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 37778888877642 2221 223567788888776555544556667777888888888777543 333 3567
Q ss_pred CCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccc
Q 043910 177 RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 177 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
+|++|++++|. ++.++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 170 ~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cCCEEECCCCc-Cccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 78888887754 444443 3347778888888887777776677777788888888877777777777777888888776
Q ss_pred ccc-ccCCC---CCCCcceeecCCCcCcccc
Q 043910 257 ERL-QSLPK---LPCNLKELDADHCAALESL 283 (353)
Q Consensus 257 ~~l-~~l~~---~~~~L~~L~l~~c~~l~~~ 283 (353)
+.. ..++. .++.|+.+++.++..++..
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CccCcCHHHHHhccccceEEECCCchhccCC
Confidence 544 22322 2355666666655555544
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.9e-22 Score=189.00 Aligned_cols=254 Identities=21% Similarity=0.231 Sum_probs=203.6
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++.++..++.+|... .++++.|++++|.++.+. ..+..+++|+.|++++|. ++.+. ...+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIE-VGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcC-hhhccCcccCCEEECCC
Confidence 456677777788888543 478999999999998874 456779999999999874 44343 35788899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.++. .+..+++|++|++++|+.++.++. .+..+++|+.|++++|.++.+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 76554444457889999999999999998776 678899999999999888888875 5889999999999999999887
Q ss_pred cccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCcccccccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYD 292 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 292 (353)
. +..+++|+.|++++|.+..+ +..+.++++|+.|++++|......+. .+++|+.|+++++ .++.++...+ ..+
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l 289 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLF-TPL 289 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSS-TTC
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHh-ccc
Confidence 5 78899999999999999855 66788999999999999754333333 3578999999998 6777776544 346
Q ss_pred ccccEEEecCCccCchHHHHhHHHHHH
Q 043910 293 YYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 293 ~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
++|+.+++.+++.-++.....+..+.+
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp TTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred cCCCEEEccCCCcCCCCCchHHHHHHH
Confidence 789999999999888887776665544
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=190.68 Aligned_cols=261 Identities=15% Similarity=0.131 Sum_probs=198.6
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEEc
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLEV 87 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~L 87 (353)
|.++.....++... .++|++|++++|.+++. ....+...+ |++|++++|.++.++. +..+++|++|++
T Consensus 37 ~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 37 KGSSGSLNSIPSGL---TEAVKSLDLSNNRITYI------SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECCSTTCSSCCTTC---CTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred eCCCCCcccccccc---cccCcEEECCCCcCccc------CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 44544444444322 35899999999988542 122444444 9999999999887753 558899999999
Q ss_pred cCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCccc-chhhhcCCCccEEEccCccC
Q 043910 88 PHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRL-PAEILSAGNMEEMILNGTAI 165 (353)
Q Consensus 88 ~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i 165 (353)
++|.++.++.. +..+++|++|++++|. ++.++....+..+++|++|++++|+..+.+ +..+..+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999988765 5678999999999874 444443246888999999999998655555 45688899999999999999
Q ss_pred ccc-CccccCCCCCCEEeccCCCCCcccCcc-ccCCCCCCEEEeeCccCCccCc----ccCCCCCCcEEEeeCCCCc---
Q 043910 166 EEL-PSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPE----NLGQLFSLEEFCLRKTKFE--- 236 (353)
Q Consensus 166 ~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~~~~----~~~~l~~L~~L~l~~~~l~--- 236 (353)
+.+ |..+..+++|++|++++|. ++.+|.. +..+++|+.|++++|.++.++. .......++.++++++.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred CccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 965 7788999999999999865 5666653 4568999999999999885432 1234567889999998875
Q ss_pred --ccchhHhhccCCceeccccccccccCCCC----CCCcceeecCCCcCcccc
Q 043910 237 --KIPTNVIHLSRLHSFCLSYCERLQSLPKL----PCNLKELDADHCAALESL 283 (353)
Q Consensus 237 --~l~~~l~~l~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~l~~~ 283 (353)
.+|..+..+++|+.|++++| .++.+|.. +++|++|++++++-..+.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 36777889999999999996 45677753 478999999998654443
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=186.01 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=202.1
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.++++++...++.+.+|..+++|++|++++|.+.+.. +..+..++ |++|++++|.++.+|. +..+++|+.|
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 3566777777777888999999999999999986532 23344445 9999999999999885 3479999999
Q ss_pred EccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC------------------Ccccc
Q 043910 86 EVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ------------------LKRLP 146 (353)
Q Consensus 86 ~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~------------------~~~~~ 146 (353)
++++|.++.++. .+..+++|+.|++++|. ++.. .+..+++|++|++++|.. +..+|
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBC----CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCc-CCcc----ccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 999999988765 46778999999999875 3322 233445555555444322 22222
Q ss_pred hhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCc
Q 043910 147 AEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLE 226 (353)
Q Consensus 147 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~ 226 (353)
. ...++|+.|++++|.++.. +.+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+|..+..+++|+
T Consensus 222 ~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 222 G--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298 (390)
T ss_dssp C--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCC
T ss_pred c--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCC
Confidence 2 2346899999999999976 478899999999999976555567789999999999999999999888788899999
Q ss_pred EEEeeCCCCcccchhHhhccCCceeccccccccccCC-CCCCCcceeecCCCc
Q 043910 227 EFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-KLPCNLKELDADHCA 278 (353)
Q Consensus 227 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~c~ 278 (353)
+|++++|.+..+|..+..+++|+.|++++|. ++.++ ..+++|+.|++++++
T Consensus 299 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 9999999999999889999999999999976 44444 456899999999874
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=3e-22 Score=201.32 Aligned_cols=240 Identities=18% Similarity=0.105 Sum_probs=148.9
Q ss_pred EeCCCc-cccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCC-CCC---CCCCCCce
Q 043910 10 LDMSKV-EEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKS-LPS---ITHPAKLV 83 (353)
Q Consensus 10 l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~-l~~---~~~~~~L~ 83 (353)
+|++++ ....+.+++|.++++|++|++++|.+.+. .+..+..+. |++|++++|.+.. ++. +..+++|+
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 344444 33455577788888888888888887542 234444444 8888888887764 332 44677888
Q ss_pred EEEccCCCccccC--CCCcCCCCccEEecCCCcCcCCCC-------------------------CCccccCCcc------
Q 043910 84 LLEVPHSNIQQLG--DGGQHHCKLSQIITAARNFVTKTP-------------------------NPSFIRSLNK------ 130 (353)
Q Consensus 84 ~L~L~~~~i~~l~--~~~~~~~~L~~L~l~~~~~l~~~~-------------------------~~~~~~~l~~------ 130 (353)
.|++++|.+..+. ..+..+++|+.|++++|.. +... ....+..+.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i-~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcC-CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 8888888777653 2456677777777776532 1110 0011222222
Q ss_pred CcEEeecCCCCCcccchhhh------------------------------------c--CCCccEEEccCccCccc-Ccc
Q 043910 131 LTILNLSGCSQLKRLPAEIL------------------------------------S--AGNMEEMILNGTAIEEL-PSS 171 (353)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~------------------------------------~--~~~L~~L~l~~~~i~~l-~~~ 171 (353)
|++|++++|......+..+. . .++|+.|++++|.+..+ +..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 77777777643332222111 1 25677777777777744 445
Q ss_pred ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCc
Q 043910 172 IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLH 249 (353)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~ 249 (353)
+..+++|++|++++|......|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..++. .+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 66777777777777554444455667777777777777777654 4566777777777777777765543 456677777
Q ss_pred eeccccc
Q 043910 250 SFCLSYC 256 (353)
Q Consensus 250 ~L~l~~~ 256 (353)
.|++++|
T Consensus 366 ~L~Ls~N 372 (844)
T 3j0a_A 366 TLDLRDN 372 (844)
T ss_dssp EEEEETC
T ss_pred EEECCCC
Confidence 7777765
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=4.6e-22 Score=185.68 Aligned_cols=254 Identities=18% Similarity=0.203 Sum_probs=203.3
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++..+..++.+|... .++++.|++++|.++.++ ..+..+++|+.|++++|. ++.+. ...+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCC
Confidence 456677777788888643 478999999999998876 456778999999999875 33332 35788899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.++. .+..+++|++|++++|+.++.++. .+..+++|+.|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 75544434468889999999999999998765 678899999999999888888775 6888999999999999999888
Q ss_pred cccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCcccccccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYD 292 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 292 (353)
. +..+++|+.|++++|.+..+ +..+.++++|+.|++++|......+. .+++|+.|+++++ .++.++...+ ..+
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l 278 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLF-TPL 278 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTT-SSC
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHh-ccc
Confidence 5 78899999999999999865 56788999999999998654332232 3578999999997 6777776544 346
Q ss_pred ccccEEEecCCccCchHHHHhHHHHHH
Q 043910 293 YYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 293 ~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
++|+.+++.+++.-++.....+..+..
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp TTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred cCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 789999999999988887777665544
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=8.8e-23 Score=190.90 Aligned_cols=195 Identities=24% Similarity=0.300 Sum_probs=97.2
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|++++|.++.+|.. +++|+.|++++|.+++++.. .++|++|++++|. ++.+ +.++.+++|++|++++|
T Consensus 93 L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~l---p~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 93 LESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKL---PELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSC---CCCTTCTTCCEEECCSS
T ss_pred CCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCC---cccCCCCCCCEEECCCC
Confidence 44444444444444322 24444444444444433221 1455555555542 2222 13555555555555554
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
... .+|.. ..+|++|++++|.++.+| .+..+++|++|++++|. ++.+|.. .++|++|++++|.++.+|. +
T Consensus 164 ~l~-~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l~~lp~-~ 233 (454)
T 1jl5_A 164 SLK-KLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNILEELPE-L 233 (454)
T ss_dssp CCS-CCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSSCCC-C
T ss_pred cCc-ccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcCCcccc-c
Confidence 322 23322 235555555555555554 35555556666655533 3334332 1355666666665555553 5
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCC
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
+.+++|++|++++|.+..+|.. +++|+.|++++|. ++.+|..+++|+.|++++|
T Consensus 234 ~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 5566666666666666555432 3556666666543 4445555566666666665
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.9e-21 Score=186.34 Aligned_cols=258 Identities=24% Similarity=0.249 Sum_probs=196.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
.++++++....++... .++|++|++++|.++. . +. ....|++|++++|.++.+|. .+++|++|+++
T Consensus 44 ~L~ls~n~L~~lp~~l---~~~L~~L~L~~N~l~~-l------p~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 44 VLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS-L------PA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp EEECCSSCCSCCCSCC---CTTCSEEEECSCCCSC-C------CC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred EEEecCCCcCccChhh---CCCCcEEEecCCCCCC-C------CC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence 3455555544444432 2688999999888753 1 22 12348899999998888887 67889999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.++.++. .+++|+.|++++|. ++.++. .+++|++|++++|.. ..+|. .+.+|+.|++++|.++.+
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-----LPPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSCC
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCC-----CCCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCCCCCCC
Confidence 998888765 56888899998774 444432 248899999998644 44553 356899999999999988
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCC
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 248 (353)
| ..+++|++|++++|. ++.+|.. +++|+.|++++|.++.+|.. +++|+.|++++|.+..+| ..+++|
T Consensus 177 ~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp C---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred c---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcC
Confidence 7 456899999999854 6667653 47899999999999988763 478999999999999888 457899
Q ss_pred ceeccccccccccCCCCCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHH
Q 043910 249 HSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNEL 311 (353)
Q Consensus 249 ~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 311 (353)
+.|++++| .++.+|..+++|+.|++++| .++.+|... ..+++|+.|++++|+ +.....
T Consensus 244 ~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l--~~l~~L~~L~L~~N~-l~~~~~ 301 (622)
T 3g06_A 244 KELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESL--IHLSSETTVNLEGNP-LSERTL 301 (622)
T ss_dssp CEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGG--GGSCTTCEEECCSCC-CCHHHH
T ss_pred cEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHH--hhccccCEEEecCCC-CCCcCH
Confidence 99999996 67789888899999999998 677887653 357889999999995 444433
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=3.4e-24 Score=191.47 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=193.0
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++....+.+..|.++++|++|++++|.+++.. . +..++ |++|++++|.++.++. .++|+.|++
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~-~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l 106 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------D-LESLSTLRTLDLNNNYVQELLV---GPSIETLHA 106 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------E-ETTCTTCCEEECCSSEEEEEEE---CTTCCEEEC
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------h-hhhcCCCCEEECcCCccccccC---CCCcCEEEC
Confidence 4677888777888899999999999999999885422 1 33344 9999999999887663 389999999
Q ss_pred cCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh-hcCCCccEEEccCccCc
Q 043910 88 PHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI-LSAGNMEEMILNGTAIE 166 (353)
Q Consensus 88 ~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~ 166 (353)
++|.++.++.. .+++|+.|++++|.. +... ...+..+++|++|++++|...+..+..+ ..+++|++|++++|.++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCC-CSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCC-CCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 99999887643 378899999998753 3332 2367788999999999987666555555 36899999999999999
Q ss_pred ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc--ccchhHhh
Q 043910 167 ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE--KIPTNVIH 244 (353)
Q Consensus 167 ~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~ 244 (353)
.++.. ..+++|++|++++| .++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++. .++..+..
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 183 DVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ccccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 88543 45899999999985 5667777788999999999999999999988999999999999999998 66778889
Q ss_pred ccCCceeccccccccccC
Q 043910 245 LSRLHSFCLSYCERLQSL 262 (353)
Q Consensus 245 l~~L~~L~l~~~~~l~~l 262 (353)
+++|+.+++++++.++..
T Consensus 261 ~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred cccceEEECCCchhccCC
Confidence 999999999987776554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1e-21 Score=177.97 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=126.9
Q ss_pred EeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC
Q 043910 63 LFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ 141 (353)
Q Consensus 63 L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 141 (353)
.+.+++.++.+|... .++|+.|++++|.++.++. .+..+++|+.|++++|. ++... ...+..+++|++|++++|..
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIE-EDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccC-HhhcCCCCCCCEEECCCCcC
Confidence 344444455554322 2355555555555555443 34445555555555442 22221 12344555555555555433
Q ss_pred Ccccchh-hhcCCCccEEEccCccCcccCc--cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCcc-C
Q 043910 142 LKRLPAE-ILSAGNMEEMILNGTAIEELPS--SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQL-P 216 (353)
Q Consensus 142 ~~~~~~~-~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~-~ 216 (353)
. .++.. +..+++|++|++++|.++.+|. .+..+++|++|++++|+.++.++ ..+..+++|+.|++++|.++.+ |
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 2 23322 4455555555555555555444 34455555555555543333332 3445555555555555555433 4
Q ss_pred cccCCCCCCcEEEeeCCCCcccchh-HhhccCCceeccccccccc-------------------------------cCCC
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKIPTN-VIHLSRLHSFCLSYCERLQ-------------------------------SLPK 264 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~l~-------------------------------~l~~ 264 (353)
..+..+++|++|++++|.+..++.. +..+++|+.|++++|..-. .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 4455555555555555555544442 2234555555555542211 1221
Q ss_pred ---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 265 ---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 265 ---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
.+++|+.|++++| .++.++...+ ..+++|+.+++++++...+..
T Consensus 272 ~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCC-CCCccCHHHH-hcCCCCCEEEeeCCCccCcCC
Confidence 3578999999998 5778876543 346889999999998777664
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.3e-22 Score=185.86 Aligned_cols=220 Identities=17% Similarity=0.188 Sum_probs=136.5
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCC-CCcCCCC
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGD-GGQHHCK 104 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~ 104 (353)
++++.|++++|.+.+. .+..+..+. |++|++++|.++.++ .+..+++|+.|++++|.++.++. .+..+++
T Consensus 64 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCCEE------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCCee------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 4567777777766431 123333334 777777777766555 23356777777777777766654 3455677
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch-hhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA-EILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
|+.|++++|. ++.++ ...+..+++|++|++++|+.++.++. .+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 138 L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 138 LKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDL 214 (440)
T ss_dssp CCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEEC
T ss_pred CceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEEC
Confidence 7777777654 23222 23566667777777777666555554 4566777777777777777665 3566677777777
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccccc
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 257 (353)
++|......|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.++. .+..+++|+.|++++|+
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 76543333355666777777777777776644 3446666777777777777765554 34566777777776654
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.1e-22 Score=192.33 Aligned_cols=237 Identities=20% Similarity=0.182 Sum_probs=185.1
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.++++++....+.+..|..+++|++|++++|.+++.. +..+..++ |++|++++|.++.+|. +..+++|+.|
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC------HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 4567777777777888999999999999999987633 23344444 9999999999998885 3478999999
Q ss_pred EccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccc----------------cC---------------------
Q 043910 86 EVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFI----------------RS--------------------- 127 (353)
Q Consensus 86 ~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~----------------~~--------------------- 127 (353)
++++|.+..+++ .+..+++|+.|++++|.. +..+ ...+ ..
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 999999988765 466789999999998743 2221 1111 11
Q ss_pred CccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEE
Q 043910 128 LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLI 206 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 206 (353)
.++|++|++++|...+ +..+..+++|+.|++++|.++.+ |..+..+++|++|++++| .++.+|..+..+++|+.|+
T Consensus 231 ~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEE
T ss_pred CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEE
Confidence 1235555555543332 24577889999999999999954 678899999999999995 5666787778899999999
Q ss_pred eeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 207 LNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 207 l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
+++|.++.+|..+..+++|+.|++++|.+..++ +..+++|+.|++++|+.
T Consensus 308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCC
Confidence 999999999988888999999999999998775 56789999999999753
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=4.1e-21 Score=179.61 Aligned_cols=220 Identities=24% Similarity=0.302 Sum_probs=123.6
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|++++|.++.+|.+..+++|++|++++|.+++++.. ..+|++|++++|. ++.. +.++.+++|++|++++|
T Consensus 133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~-l~~l---~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEEL---PELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSC---CCCTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc-CCcC---ccccCCCCCCEEECCCC
Confidence 677777777766666655667777777777776665432 2466677776653 3322 24566677777777665
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
... .+|.. .++|++|++++|.++.+| .+..+++|++|++++|. ++.+|.. +++|+.|++++|.++.+|..
T Consensus 206 ~l~-~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~l~~l~~~- 275 (454)
T 1jl5_A 206 SLK-KLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLTDLPEL- 275 (454)
T ss_dssp CCS-SCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCSCCCCC-
T ss_pred cCC-cCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCcccccCcc-
Confidence 433 23321 235666666666666655 35566666666666643 3334431 24455555555555444432
Q ss_pred CCCCCCcEEEeeCCCCcccch---hH-------------hhc-cCCceeccccccccccCCCCCCCcceeecCCCcCccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPT---NV-------------IHL-SRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALES 282 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~---~l-------------~~l-~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~ 282 (353)
.++|+.|++++|.+..++. .+ ..+ ++|+.|++++| .++.+|..+++|+.|++++| .++.
T Consensus 276 --~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~ 351 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAE 351 (454)
T ss_dssp --CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSC
T ss_pred --cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccccCCcCCEEECCCC-cccc
Confidence 1344444444444432211 00 012 36777777764 34456666677777777776 4566
Q ss_pred cCccccccccccccEEEecCCcc
Q 043910 283 LSDLFSISYDYYIRCFELSTNYK 305 (353)
Q Consensus 283 ~~~~~~~~~~~~l~~l~~~~c~~ 305 (353)
++. .+++|+.+++++|.-
T Consensus 352 lp~-----~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 352 VPE-----LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCC-----CCTTCCEEECCSSCC
T ss_pred ccc-----hhhhccEEECCCCCC
Confidence 654 246677777777643
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=9.6e-22 Score=172.82 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=172.9
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L 85 (353)
.+++++.....++.. ..++|++|++++|.+++. .+..+...+ |++|++++|.++.++ .+..+++|+.|
T Consensus 15 ~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHV------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp EEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred EEEcCcCCcccCCcC---CCCCceEEEeeCCcCCcc------CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 345555544444432 357899999999998642 223344444 999999999988774 35578999999
Q ss_pred EccCCC-cccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 86 EVPHSN-IQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 86 ~L~~~~-i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
++++|. +..+ +..+..+++|+.|++++|.. +... ...+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcC-CEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 999997 8877 45667799999999999853 3332 346888999999999997665444455888999999999999
Q ss_pred cCcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 164 AIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 164 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
.++.++. .+..+++|++|++++|...+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9998876 48889999999999976555557788999999999999999998774 4889999999999999986
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.4e-21 Score=183.04 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=153.3
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCC-CcCCCC
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDG-GQHHCK 104 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~ 104 (353)
+++++|++++|.+++. .+..+..+. |++|++++|.++.++ .+..+++|+.|++++|.++.++.. +..+++
T Consensus 75 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCcCceE------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 5678888888777542 223344444 888888888777665 334677888888888888776654 455778
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch-hhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA-EILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
|++|++++|. ++.++ ...+..+++|++|++++|+.++.++. .+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 149 L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 149 LRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEM 225 (452)
T ss_dssp CCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEEC
Confidence 8888887764 33332 23567778888888887766666654 4667778888888888877775 4667778888888
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccccc
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 257 (353)
++|...+..|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 87654444456677788888888888877754 4456777788888888888776654 35667778888887764
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.4e-23 Score=193.61 Aligned_cols=215 Identities=13% Similarity=0.058 Sum_probs=165.8
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCcc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLS 106 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~ 106 (353)
+++|++|++++|.+++..+ ..+..++ |++|++++|.++.++++..+++|+.|++++|.++.++. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA------ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG------GGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCCCCH------HHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 3489999999998876432 2233344 99999999988766667788999999999998887653 38889
Q ss_pred EEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcc-cCcccc-CCCCCCEEecc
Q 043910 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE-LPSSIE-CLSRLLHLGLR 184 (353)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~-~l~~L~~L~l~ 184 (353)
.|++++|.. +..+ ...+++|++|++++|...+..|..+..+++|+.|++++|.++. .|..+. .+++|++|+++
T Consensus 103 ~L~L~~N~l-~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 103 TLHAANNNI-SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EEECCSSCC-CCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EEECcCCcC-CCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 999988743 2221 2346788999999877766667678888899999999998885 445554 68899999998
Q ss_pred CCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccccc
Q 043910 185 DCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERL 259 (353)
Q Consensus 185 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 259 (353)
+|. ++.++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|+..
T Consensus 178 ~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 178 YNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSC-CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCc-cccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 865 555543 4468889999999999888887788888999999999998888888888888999999887654
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.4e-22 Score=186.32 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=187.5
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.++++++....+.+..|.++++|++|++++|.+++.. + +..++ |++|++++|.++.++.. ++|+.|++
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~-l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L 106 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------D-LESLSTLRTLDLNNNYVQELLVG---PSIETLHA 106 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-------E-CTTCTTCCEEECCSSEEEEEEEC---TTCCEEEC
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-------c-cccCCCCCEEEecCCcCCCCCCC---CCcCEEEC
Confidence 4677777777788889999999999999999886422 1 33344 99999999998876633 78999999
Q ss_pred cCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh-cCCCccEEEccCccCc
Q 043910 88 PHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIE 166 (353)
Q Consensus 88 ~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~ 166 (353)
++|.+..++.. .+++|+.|++++|.. +... ...++.+++|++|++++|...+..|..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCC-CSGG-GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCC-CCCC-chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999887643 468899999998753 3332 23677889999999999877776776665 7899999999999999
Q ss_pred ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc--ccchhHhh
Q 043910 167 ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE--KIPTNVIH 244 (353)
Q Consensus 167 ~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~ 244 (353)
.++. ...+++|++|++++| .++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 8754 446899999999985 4666777788999999999999999999988889999999999999987 66777888
Q ss_pred ccCCceecccccc
Q 043910 245 LSRLHSFCLSYCE 257 (353)
Q Consensus 245 l~~L~~L~l~~~~ 257 (353)
++.|+.+++..+.
T Consensus 261 l~~L~~l~~~~~~ 273 (487)
T 3oja_A 261 NQRVQTVAKQTVK 273 (487)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCCcEEeccccc
Confidence 8888888886443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.6e-20 Score=178.74 Aligned_cols=236 Identities=25% Similarity=0.249 Sum_probs=193.4
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccE
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQ 107 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~ 107 (353)
..+++.|++++|.++. . +..+. ..|++|++++|.++.+|. .+++|+.|++++|.++.++. .+++|++
T Consensus 39 ~~~l~~L~ls~n~L~~-l------p~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 39 NNGNAVLNVGESGLTT-L------PDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp HHCCCEEECCSSCCSC-C------CSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCCCcEEEecCCCcCc-c------ChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 3469999999999852 2 22222 459999999999999988 57999999999999998876 6799999
Q ss_pred EecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCC
Q 043910 108 IITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCK 187 (353)
Q Consensus 108 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~ 187 (353)
|++++|. ++.++. .+++|++|++++|. +..+|.. +++|++|++++|.++.+|.. +++|+.|++++|
T Consensus 106 L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N- 171 (622)
T 3g06_A 106 LSIFSNP-LTHLPA-----LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN- 171 (622)
T ss_dssp EEECSCC-CCCCCC-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-
T ss_pred EECcCCc-CCCCCC-----CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCC-
Confidence 9999874 444432 56899999999965 4556653 58999999999999988753 578999999985
Q ss_pred CCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCC
Q 043910 188 RLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPC 267 (353)
Q Consensus 188 ~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 267 (353)
.++.+| ..+++|+.|++++|.++.+|.. .++|+.|++++|.+..+|.. +++|+.|++++| .++.+|..++
T Consensus 172 ~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp~~l~ 241 (622)
T 3g06_A 172 QLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPS 241 (622)
T ss_dssp CCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCCCCT
T ss_pred CCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCC-ccCcCCCCCC
Confidence 566677 4578999999999999988763 47899999999999988763 578999999986 6777888889
Q ss_pred CcceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 268 NLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 268 ~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
+|+.|++++| .++.++. .+++|+.|++++| ++.
T Consensus 242 ~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 242 ELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCC
T ss_pred cCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCC
Confidence 9999999998 6888876 3578999999998 444
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.6e-21 Score=164.05 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-h
Q 043910 70 LKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-A 147 (353)
Q Consensus 70 ~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~ 147 (353)
++.+|. ..++|+.|++++|+++.++. .+..+++|+.|++++|..++.++ ...+..+++|++|++++|+.+..++ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 667776 35688999999999888776 45678889999998886555554 3467888899999998833444444 4
Q ss_pred hhhcCCCccEEEccCccCcccCccccCCCCCC---EEeccCCCCCcccCc-cccCCCCCC-EEEeeCccCCccCcccCCC
Q 043910 148 EILSAGNMEEMILNGTAIEELPSSIECLSRLL---HLGLRDCKRLKSLPK-GLCKLKSLK-FLILNGCGITQLPENLGQL 222 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~i~~~~~~~~~l 222 (353)
.+..+++|++|++++|.++.+|. +..+++|+ +|++++|..++.++. .+..+++|+ .|++++|.++.+|......
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 67788899999999998888876 77788887 999998746666664 578888999 9999999888887655555
Q ss_pred CCCcEEEeeCCC-Ccccch-hHhhc-cCCceeccccccccccCCC-CCCCcceeecCCCcC
Q 043910 223 FSLEEFCLRKTK-FEKIPT-NVIHL-SRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAA 279 (353)
Q Consensus 223 ~~L~~L~l~~~~-l~~l~~-~l~~l-~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~ 279 (353)
++|+.|++++|+ +..++. .+..+ ++|+.|++++| .++.+|. .+++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 789999999995 887754 56677 88999998885 4556654 467777887777654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=2.4e-22 Score=179.01 Aligned_cols=192 Identities=17% Similarity=0.158 Sum_probs=87.3
Q ss_pred cceEeecccCCC-CCCC-C--CCCCCceEEEccCCCccccCCCCcCC-----CCccEEecCCCcCcCCCCCCccccCCcc
Q 043910 60 IRYLFWHGYPLK-SLPS-I--THPAKLVLLEVPHSNIQQLGDGGQHH-----CKLSQIITAARNFVTKTPNPSFIRSLNK 130 (353)
Q Consensus 60 L~~L~l~~~~~~-~l~~-~--~~~~~L~~L~L~~~~i~~l~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 130 (353)
|++|++++|.++ .+|. . ..+++|+.|++++|.+++.+..+..+ ++|++|++++|.. +..+ ...++.+++
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~-~~~~~~l~~ 174 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFS-CEQVRVFPA 174 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCC-TTTCCCCSS
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccch-HHHhccCCC
Confidence 555555555544 2332 1 34455555555555555443222222 4555555554432 2221 124445555
Q ss_pred CcEEeecCCCCCcc--cchhh--hcCCCccEEEccCccCcccC---c-cccCCCCCCEEeccCCCCCcccC-ccccCCCC
Q 043910 131 LTILNLSGCSQLKR--LPAEI--LSAGNMEEMILNGTAIEELP---S-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKS 201 (353)
Q Consensus 131 L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~i~~l~---~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~ 201 (353)
|++|++++|...+. ++..+ ..+++|++|++++|.++.++ . .+..+++|++|++++|...+..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 55555555443332 12222 44555555555555554221 1 12344555555555543222222 22334455
Q ss_pred CCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccc
Q 043910 202 LKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 202 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|+.|++++|
T Consensus 255 L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 5555555555555544433 455555555555554443 444555555555543
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.7e-20 Score=166.74 Aligned_cols=186 Identities=18% Similarity=0.276 Sum_probs=116.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|+++++.++.++.+..+++|+.|++++|.+..++. +..+++|+.|++++|. ++. .+.+..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~---~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKN---VSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSC---CGGGTTCTTCCEEECTTS
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCC---chhhcCCCCCCEEECCCC
Confidence 56666666666655555556666666666666666554 5556666666666653 222 235666666777777665
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++. +..+++|++|++++|.++.++. +..+++|++|++++| .++.++. +..+++|+.|++++|.++.++. +
T Consensus 118 ~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 118 QI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp CC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCccCcChh-h
Confidence 43 33333 5666677777777776666554 566677777777764 3444444 6666777777777776666554 5
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
..+++|++|++++|.+..++. +..+++|+.|++++|+
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 666677777777777665553 5666777777776653
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=3.9e-20 Score=161.43 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=146.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
++.+++.++.++.++.+..+++|+.|++++|.+..++ .+..+++|++|++++|. ++..+ ...+..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLP-NGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTS
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccC-hhHhcCCcCCCEEECCCC
Confidence 7777777777777777777788888888888877653 56677888888888764 33332 234677888888888887
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
...+..+..+..+++|++|++++|.++.+++. +..+++|++|++++|. ++.++ ..+..+++|+.|++++|.++.++.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 65544444567788888888888888876654 5778888888888865 44444 456788888888888888886654
Q ss_pred -ccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcce
Q 043910 218 -NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKE 271 (353)
Q Consensus 218 -~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~ 271 (353)
.+..+++|+.|++++|++. +.+++|+.+++..|...+.+|....++..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 3677888888888888764 33567788888877766777766555443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.3e-19 Score=157.83 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=84.4
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|+++++.++.++. +..+++|++|++++|.++.++... ..+++|++|++++|. ++..+ ...+..+++|++|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEEC
Confidence 5555555555555542 334555555555555555554433 335555555555543 22221 123445555555555
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~ 214 (353)
++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.++ ..+..+++|+.|++++|.++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCc
Confidence 55433333333344555555555555555544432 4445555555555532 33333 234455555555555555554
Q ss_pred cCc-ccCCCCCCcEEEeeCCCC
Q 043910 215 LPE-NLGQLFSLEEFCLRKTKF 235 (353)
Q Consensus 215 ~~~-~~~~l~~L~~L~l~~~~l 235 (353)
+|. .+..+++|+.|++++|++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhccccCCCEEEecCCCe
Confidence 443 244455555555555544
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.9e-20 Score=165.20 Aligned_cols=197 Identities=14% Similarity=0.211 Sum_probs=165.1
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC 103 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~ 103 (353)
+..+++|++|++++|.+.. . +.+..+. |++|++++|.++.++.+..+++|+.|++++|.++.++ .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------l-~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-------I-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-------C-TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC-------c-hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCC
Confidence 3457899999999998754 1 2344444 9999999999999888778999999999999999875 577899
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
+|+.|++++|. ++. .+.+..+++|++|++++|.. ..++. +..+++|+.|++++|.++.++. +..+++|++|++
T Consensus 108 ~L~~L~l~~n~-l~~---~~~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITD---VTPLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp TCCEEECTTSC-CCC---CGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCCEEECCCCC-CCC---chhhcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEEC
Confidence 99999999985 333 34588999999999999754 44444 8889999999999999998876 889999999999
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccch
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 240 (353)
++|. ++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|++...|.
T Consensus 181 ~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 181 DDNK-ISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CSSC-CCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCc-cCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 9964 566665 7899999999999999998875 8899999999999999876554
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=7e-20 Score=161.25 Aligned_cols=199 Identities=17% Similarity=0.204 Sum_probs=145.7
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCCCcCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDGGQHH 102 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~~~~~ 102 (353)
+.++++++++++.++.++. .+..+. ..++.|++++|.++.++ .+..+++|+.|++++|.++.++.. ..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-------ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-------LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-------CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred ccccCCccEEECCCCCCCc-------CCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 4567888888888887743 222221 23888888888887665 355788888888888888877654 677
Q ss_pred CCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEE
Q 043910 103 CKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHL 181 (353)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L 181 (353)
++|+.|++++|. ++.++ ..+..+++|++|++++|...+..+..+..+++|++|++++|.++.+|.. +..+++|++|
T Consensus 77 ~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp TTCCEEECCSSC-CSSCC--CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCc-CCcCc--hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 888888888764 33332 3567788888888888655544445677888888888888888876653 5678888888
Q ss_pred eccCCCCCcccCc-cccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 182 GLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 182 ~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
++++| .++.+|. .+..+++|+.|++++|.++.+|..+....+|+.+++++|++.
T Consensus 154 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 88875 4556664 456788888888888888888887777788888888888764
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=6.7e-20 Score=160.27 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=6.0
Q ss_pred CceEEEccCCCccc
Q 043910 81 KLVLLEVPHSNIQQ 94 (353)
Q Consensus 81 ~L~~L~L~~~~i~~ 94 (353)
+|+.|++++|.++.
T Consensus 29 ~l~~L~ls~n~l~~ 42 (276)
T 2z62_A 29 STKNLDLSFNPLRH 42 (276)
T ss_dssp TCCEEECTTCCCCE
T ss_pred CccEEECCCCcccc
Confidence 34444444444443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.4e-20 Score=162.12 Aligned_cols=195 Identities=20% Similarity=0.187 Sum_probs=96.2
Q ss_pred cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|++++|.++.++ .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.. +... ...+..+++|++|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLA-LGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEEC-TTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccC-hhhhcCCccccEEEC
Confidence 555555555554444 22345555555555555555443 334455555555555432 2121 224455555555555
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcc--cCccccCCCCCCEEeccCCCCCcccCccccCCCCCC----EEEeeCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEE--LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK----FLILNGC 210 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~----~L~l~~~ 210 (353)
++|...+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|...+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 5544333222234555555555555555553 445555555566666655432222222333333333 5556666
Q ss_pred cCCccCcccCCCCCCcEEEeeCCCCcccchh-HhhccCCceeccccc
Q 043910 211 GITQLPENLGQLFSLEEFCLRKTKFEKIPTN-VIHLSRLHSFCLSYC 256 (353)
Q Consensus 211 ~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~ 256 (353)
.++.++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 5555544444444566666666665554442 345556666666554
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-19 Score=155.17 Aligned_cols=195 Identities=22% Similarity=0.285 Sum_probs=162.0
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++++++.++.+|... .++++.|++++|.++.++. .+..+++|++|+++++. ++.++ ...+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCC
Confidence 678899999999888643 4789999999999998875 56779999999999874 44443 34578899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.+++ .+..+++|++|++++|. ++.+|. .+..+++|+.|++++|.++.++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeC
Confidence 76554444557889999999999999997765 46889999999999964 556664 5789999999999999999876
Q ss_pred c-ccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccc
Q 043910 217 E-NLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 217 ~-~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~ 258 (353)
. .+..+++|++|++++|.+..++. .+..+++|+.|++++|+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 5 47889999999999999997776 477899999999999753
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.4e-20 Score=167.67 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=159.4
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCC-CC-----CCceEEEccCCCccccC-CC
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSIT-HP-----AKLVLLEVPHSNIQQLG-DG 98 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~-~~-----~~L~~L~L~~~~i~~l~-~~ 98 (353)
++++|++|++++|.+++..+.... +...+ |++|++++|.++.+|..+ .+ ++|++|++++|.+..++ ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL----EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS----SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHH----HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 699999999999999765543210 13334 999999999998876432 33 89999999999999877 56
Q ss_pred CcCCCCccEEecCCCcCcCCCCCCcc--ccCCccCcEEeecCCCCCc--ccch-hhhcCCCccEEEccCccCcccC--cc
Q 043910 99 GQHHCKLSQIITAARNFVTKTPNPSF--IRSLNKLTILNLSGCSQLK--RLPA-EILSAGNMEEMILNGTAIEELP--SS 171 (353)
Q Consensus 99 ~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~i~~l~--~~ 171 (353)
+..+++|++|++++|......+.... +..+++|++|++++|...+ .++. .+..+++|++|++++|.++..+ ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 77899999999999864321111122 3788999999999976542 3332 3457899999999999999654 35
Q ss_pred ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcc
Q 043910 172 IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~ 237 (353)
+..+++|++|++++|. ++.+|..+. ++|+.|++++|+++.+|. +..+++|++|++++|+++.
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 6678999999999965 668887665 899999999999998887 8899999999999998863
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2e-20 Score=163.32 Aligned_cols=216 Identities=19% Similarity=0.184 Sum_probs=170.9
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+..+.+.++.+..+.....+++|+.|+++++.+..++ .+..+++|++|++++|. ++. .+.+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~---~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHD---ISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCC---CGGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCC---chhhcCCCCCCEEECCCC
Confidence 4455556666555555557889999999999998764 47789999999999985 332 457889999999999998
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
...+..+..+..+++|++|++++|.++.+++. +..+++|++|++++|. ++.++ ..+..+++|+.|++++|.++.++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 66555555578899999999999999977664 6889999999999975 55555 457899999999999999997765
Q ss_pred c-cCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCCCCCcceeecCCCcCccccCc
Q 043910 218 N-LGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSD 285 (353)
Q Consensus 218 ~-~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 285 (353)
. +..+++|+.|++++|.+..++. .+..+++|+.|++++|+.... ++.|+.++++++.--..+|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccC
Confidence 4 5889999999999999997665 468899999999999854433 45677777776654445544
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.4e-19 Score=157.82 Aligned_cols=193 Identities=22% Similarity=0.217 Sum_probs=163.8
Q ss_pred ccceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
.++.++++++.++.+|... .++++.|++++|.+..+. ..+..+++|+.|++++|. ++..+ ..+.+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ---VDGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEE---CCSCCTTCCEEECC
T ss_pred CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCccc---CCCCCCcCCEEECC
Confidence 3889999999999998654 479999999999998865 456779999999999875 33332 34788999999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCcc
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQL 215 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~ 215 (353)
+| .+..+|..+..+++|++|++++|.++.+++ .+..+++|++|++++|. ++.+| ..+..+++|+.|++++|+++.+
T Consensus 86 ~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 96 455788888899999999999999998874 68899999999999965 55555 4578899999999999999988
Q ss_pred Ccc-cCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 216 PEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 216 ~~~-~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
|.. +..+++|+.|++++|.+..+|..+...++|+.+++++|+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 864 5779999999999999999999888899999999998753
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6.6e-20 Score=156.85 Aligned_cols=193 Identities=16% Similarity=0.187 Sum_probs=151.9
Q ss_pred ccceEeecccCCCCCCC--CCCCCCceEEEccCCC-ccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEE
Q 043910 59 EIRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSN-IQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~-i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 134 (353)
.+++|++++|.++.++. +..+++|+.|++++|. ++.++. .+..+++|++|++++|+.++.++ ...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEE
Confidence 38888888888887774 4478899999999996 888775 45678899999999866666554 3467788999999
Q ss_pred eecCCCCCcccchhhhcCCCcc---EEEccCc-cCcccCc-cccCCCCCC-EEeccCCCCCcccCccccCCCCCCEEEee
Q 043910 135 NLSGCSQLKRLPAEILSAGNME---EMILNGT-AIEELPS-SIECLSRLL-HLGLRDCKRLKSLPKGLCKLKSLKFLILN 208 (353)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~l~~-~~~~l~~L~-~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 208 (353)
++++|.. ..+|. +..+++|+ .|++++| .++.++. .+..+++|+ +|++++|. ++.+|......++|+.|+++
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECT
T ss_pred eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcC
Confidence 9998654 44675 77777887 9999999 8888776 478889999 99998854 55777644444889999999
Q ss_pred Ccc-CCccC-cccCCC-CCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 209 GCG-ITQLP-ENLGQL-FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 209 ~~~-i~~~~-~~~~~l-~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
+|. ++.++ ..+..+ ++|+.|++++|++..+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 994 88775 456778 8999999999999888775 67889999888764
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.1e-21 Score=184.08 Aligned_cols=246 Identities=14% Similarity=0.124 Sum_probs=139.9
Q ss_pred EEEeCCCccccccCHH-HHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccCCCCCC--CCC-CCC--
Q 043910 8 ICLDMSKVEEIHLYSD-TFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLP--SIT-HPA-- 80 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~--~~~-~~~-- 80 (353)
..+|++.....+.... .+..+++|++|++++|.++..... ..+..+.. ..|++|++++|.++... .+. .++
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK--DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH--HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH--HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3455555544343333 367788888888888887532110 11122222 33888888888765311 111 122
Q ss_pred --CceEEEccCCCccc-----cCCCCcCCCCccEEecCCCcCcCCCCCCcc-----ccCCccCcEEeecCCCCCcc----
Q 043910 81 --KLVLLEVPHSNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTPNPSF-----IRSLNKLTILNLSGCSQLKR---- 144 (353)
Q Consensus 81 --~L~~L~L~~~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~---- 144 (353)
+|++|++++|.+.. ++..+..+++|++|++++|. ++... ... ....++|++|++++|.....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH-HHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888888763 34455677888888888775 22110 011 12245677777777655442
Q ss_pred cchhhhcCCCccEEEccCccCccc-Ccccc-----CCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCCc
Q 043910 145 LPAEILSAGNMEEMILNGTAIEEL-PSSIE-----CLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 145 ~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~-----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~~ 214 (353)
++..+..+++|++|++++|.++.. +..+. ..++|++|++++|..... ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 344455567777777777776531 11111 245777777777543321 34445566777777777776652
Q ss_pred c------CcccCCCCCCcEEEeeCCCCcc-----cchhHhhccCCceecccccc
Q 043910 215 L------PENLGQLFSLEEFCLRKTKFEK-----IPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 215 ~------~~~~~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~ 257 (353)
. +.....+++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 1 1122345667777777776663 45556666777777776653
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=2.7e-21 Score=181.44 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=111.2
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-C-ccceEeecccCCCC-----CC-CCCCCCCceEEEccCCCcc
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-P-EIRYLFWHGYPLKS-----LP-SITHPAKLVLLEVPHSNIQ 93 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~-~L~~L~l~~~~~~~-----l~-~~~~~~~L~~L~L~~~~i~ 93 (353)
+..+..+++|++|++++|.+.+.... .....+.. . .|++|++++|.++. ++ .+..+++|+.|++++|.+.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVH--CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHH--HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHH--HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 45677889999999999887542221 11122221 1 38899999888763 23 3446788888888888876
Q ss_pred ccC-----CC-CcCCCCccEEecCCCcCcCCCC---CCccccCCccCcEEeecCCCCCcccchhhh-----cCCCccEEE
Q 043910 94 QLG-----DG-GQHHCKLSQIITAARNFVTKTP---NPSFIRSLNKLTILNLSGCSQLKRLPAEIL-----SAGNMEEMI 159 (353)
Q Consensus 94 ~l~-----~~-~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~ 159 (353)
... .. ....++|++|++++|.. +... ....+..+++|++|++++|......+..+. ..++|++|+
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCC-BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCC-CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 421 11 11245688888877742 2111 011344556677777766543222122221 234566666
Q ss_pred ccCccCcc-----cCccccCCCCCCEEeccCCCCCccc------CccccCCCCCCEEEeeCccCCc-----cCcccCCCC
Q 043910 160 LNGTAIEE-----LPSSIECLSRLLHLGLRDCKRLKSL------PKGLCKLKSLKFLILNGCGITQ-----LPENLGQLF 223 (353)
Q Consensus 160 l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~l------~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~ 223 (353)
+++|.++. ++..+..+++|++|++++|. ++.. +..+..+++|++|++++|.++. ++..+..++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 66665553 34444555556666665543 2211 1111234555555555555542 343344444
Q ss_pred CCcEEEeeCCCC
Q 043910 224 SLEEFCLRKTKF 235 (353)
Q Consensus 224 ~L~~L~l~~~~l 235 (353)
+|++|++++|.+
T Consensus 285 ~L~~L~Ls~n~i 296 (461)
T 1z7x_W 285 SLKELSLAGNEL 296 (461)
T ss_dssp TCCEEECTTCCC
T ss_pred CcceEECCCCCC
Confidence 555555555544
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=2.4e-21 Score=174.30 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=12.0
Q ss_pred CceEEEccCCCccccCCCCcCCCCccEEecCC
Q 043910 81 KLVLLEVPHSNIQQLGDGGQHHCKLSQIITAA 112 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~ 112 (353)
+++.+++++|.+.+.......+++|++|++++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccC
Confidence 33344444333333333333333333333333
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=8.4e-19 Score=158.61 Aligned_cols=233 Identities=19% Similarity=0.244 Sum_probs=111.5
Q ss_pred EeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC
Q 043910 63 LFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ 141 (353)
Q Consensus 63 L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 141 (353)
++-++++++.+|... .+++++|+|++|+|+.++.. +..+++|++|++++|...+.++ ..+|.++++++++...+++.
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCc
Confidence 333444455555322 34555555555555555542 3445555555555554332222 23444555554433322223
Q ss_pred Cccc-chhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCC-CCCCEEEeeCccCCccCc
Q 043910 142 LKRL-PAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKL-KSLKFLILNGCGITQLPE 217 (353)
Q Consensus 142 ~~~~-~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l-~~L~~L~l~~~~i~~~~~ 217 (353)
+..+ |..+..+++|++|++++|.++.++. .+....++..+++.++..+..++. .+..+ ..++.|++++|.++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 3333 3344555555555555555554443 222334455555555444554443 23333 235555555555555555
Q ss_pred ccCCCCCCcEEEeeC-CCCcccch-hHhhccCCceeccccccccccCCC-CCCCcceeecCCCcCccccCcccccccccc
Q 043910 218 NLGQLFSLEEFCLRK-TKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAALESLSDLFSISYDYY 294 (353)
Q Consensus 218 ~~~~l~~L~~L~l~~-~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 294 (353)
......+|+++++.+ |.++.+|. .+.++++|+.|++++| .++.+|. .+.+|+.|.+.++..++.+|.. ...++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l---~~l~~ 247 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTL---EKLVA 247 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCT---TTCCS
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCc---hhCcC
Confidence 444445555555543 34445544 3345555666665553 3445543 3455555555555555555532 22344
Q ss_pred ccEEEec
Q 043910 295 IRCFELS 301 (353)
Q Consensus 295 l~~l~~~ 301 (353)
|+.+++.
T Consensus 248 L~~l~l~ 254 (350)
T 4ay9_X 248 LMEASLT 254 (350)
T ss_dssp CCEEECS
T ss_pred hhhCcCC
Confidence 4555543
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=3.6e-20 Score=164.75 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=108.4
Q ss_pred CCCceEEEccCCCccccC-CCC--cCCCCccEEecCCCcCcCCCCCC--ccccCCccCcEEeecCCCCCcccchhhhcCC
Q 043910 79 PAKLVLLEVPHSNIQQLG-DGG--QHHCKLSQIITAARNFVTKTPNP--SFIRSLNKLTILNLSGCSQLKRLPAEILSAG 153 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~-~~~--~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 153 (353)
.++|++|++++|.+.+.. ..+ ..+++|+.|++++|..-...+.. ..+..+++|++|++++|...+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 345666666666665433 222 45666666666665422111100 1233566666777766655444445566666
Q ss_pred CccEEEccCccCcc---cCc--cccCCCCCCEEeccCCCCCcccCc----cccCCCCCCEEEeeCccCCcc-CcccCCC-
Q 043910 154 NMEEMILNGTAIEE---LPS--SIECLSRLLHLGLRDCKRLKSLPK----GLCKLKSLKFLILNGCGITQL-PENLGQL- 222 (353)
Q Consensus 154 ~L~~L~l~~~~i~~---l~~--~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~i~~~-~~~~~~l- 222 (353)
+|++|++++|.+.. ++. .+..+++|++|++++|. ++.++. .+..+++|++|++++|.++.. |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 67777776666542 221 23456666667766643 333332 134566667777777666644 5444444
Q ss_pred --CCCcEEEeeCCCCcccchhHhhccCCceeccccccccc-cCCCCCCCcceeecCCC
Q 043910 223 --FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQ-SLPKLPCNLKELDADHC 277 (353)
Q Consensus 223 --~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~-~l~~~~~~L~~L~l~~c 277 (353)
++|++|++++|.+..+|..+. ++|+.|++++|...+ ..+..+++|+.|+++++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 466777777776666665442 566677776653322 22334566666666665
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1e-20 Score=173.46 Aligned_cols=234 Identities=13% Similarity=0.088 Sum_probs=167.2
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC------------CCCCCCceEEEcc
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS------------ITHPAKLVLLEVP 88 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~------------~~~~~~L~~L~L~ 88 (353)
..++..+++|++|++++|.++...+.. ....+...+ |++|++++|.+..+.. +..+++|+.|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~--l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARW--LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHH--HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHH--HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 467788999999999999876532211 122233333 9999999987654421 1467899999999
Q ss_pred CCCccc-----cCCCCcCCCCccEEecCCCcCcCCCCC---CccccCC---------ccCcEEeecCCCCC-cccc---h
Q 043910 89 HSNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTPN---PSFIRSL---------NKLTILNLSGCSQL-KRLP---A 147 (353)
Q Consensus 89 ~~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~ 147 (353)
+|.+.. ++..+..+++|+.|++++|.. +.... ...+..+ ++|++|++++|... ..++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 998876 444556788999999998853 21100 0123333 78999999987654 3344 4
Q ss_pred hhhcCCCccEEEccCccCc--c----cCccccCCCCCCEEeccCCCCC----cccCccccCCCCCCEEEeeCccCCc---
Q 043910 148 EILSAGNMEEMILNGTAIE--E----LPSSIECLSRLLHLGLRDCKRL----KSLPKGLCKLKSLKFLILNGCGITQ--- 214 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~--~----l~~~~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~i~~--- 214 (353)
.+..+++|+.|++++|.++ . ++..+..+++|++|++++|... ..+|..+..+++|+.|++++|.++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 5667889999999999887 2 3336778899999999986642 4566677888999999999998873
Q ss_pred --cCccc--CCCCCCcEEEeeCCCCcc-----cchhH-hhccCCceeccccccc
Q 043910 215 --LPENL--GQLFSLEEFCLRKTKFEK-----IPTNV-IHLSRLHSFCLSYCER 258 (353)
Q Consensus 215 --~~~~~--~~l~~L~~L~l~~~~l~~-----l~~~l-~~l~~L~~L~l~~~~~ 258 (353)
++..+ +.+++|+.|++++|.+.. ++..+ .++++|++|++++|..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 35555 348889999999999885 77766 5688999999988754
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=6.4e-20 Score=164.90 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=136.0
Q ss_pred CCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC-CCCCCCCceEEEccCCCccc--cCCCCcCCCCcc
Q 043910 30 KLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQ--LGDGGQHHCKLS 106 (353)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~--l~~~~~~~~~L~ 106 (353)
.++.++++++.+.... ...+....++.++++++.+...+ ..+.+++|+.|++++|.+.. ++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~~~~------~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDV------TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCHHH------HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCCHHH------HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3667777766553110 00000122667777777655433 45567777777777777653 444456677777
Q ss_pred EEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCc--ccchhhhcCCCccEEEccCc-cCcc--cCccccCCC-CCCE
Q 043910 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLK--RLPAEILSAGNMEEMILNGT-AIEE--LPSSIECLS-RLLH 180 (353)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~l~-~L~~ 180 (353)
+|++++|. +++. ....++.+++|++|++++|..++ .++..+..+++|++|++++| .++. ++..+..++ +|++
T Consensus 122 ~L~L~~~~-l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLR-LSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp EEECTTCB-CCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred EEeCcCcc-cCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 88777774 2211 12355667778888887774333 25555667777888888777 7763 556667777 7888
Q ss_pred EeccCCC-CC--cccCccccCCCCCCEEEeeCcc-CC-ccCcccCCCCCCcEEEeeCCC-Cc-ccchhHhhccCCceecc
Q 043910 181 LGLRDCK-RL--KSLPKGLCKLKSLKFLILNGCG-IT-QLPENLGQLFSLEEFCLRKTK-FE-KIPTNVIHLSRLHSFCL 253 (353)
Q Consensus 181 L~l~~~~-~~--~~l~~~~~~l~~L~~L~l~~~~-i~-~~~~~~~~l~~L~~L~l~~~~-l~-~l~~~l~~l~~L~~L~l 253 (353)
|++++|. .+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+.++++|+.|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 8887763 23 2345555667778888887777 44 445556777778888887774 32 22224567777888888
Q ss_pred ccc
Q 043910 254 SYC 256 (353)
Q Consensus 254 ~~~ 256 (353)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 776
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=6.5e-18 Score=145.50 Aligned_cols=173 Identities=22% Similarity=0.310 Sum_probs=137.7
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++++++.++.+|... .++++.|++++|.+..+.. .+..+++|++|++++|. ++... ...+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLS-AGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccC-HhHhccCCcCCEEECCC
Confidence 678889999998888654 3789999999999988765 46678999999999874 44333 34578889999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.++.. +..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 766554445677889999999999999977764 578899999999985 4555654 6788899999999999988776
Q ss_pred c-ccCCCCCCcEEEeeCCCCc
Q 043910 217 E-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 217 ~-~~~~l~~L~~L~l~~~~l~ 236 (353)
. .+..+++|+.|++++|++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 4 5778889999999999876
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=5.3e-18 Score=161.78 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=150.1
Q ss_pred HHhcCC-----CCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC
Q 043910 24 TFTKMR-----KLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG 98 (353)
Q Consensus 24 ~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~ 98 (353)
.+.+++ +|+.|++++|.+++ .+ ..+ ...|++|++++|.++.+| ..+++|+.|++++|.++.++.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp------~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-LP------DNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE- 117 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-CC------SCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-
T ss_pred hhhhccccccCCccEEEeCCCCCCc-cC------HhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-
Confidence 455554 89999999998865 22 222 134999999999999888 557899999999999998876
Q ss_pred CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCC
Q 043910 99 GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL 178 (353)
Q Consensus 99 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L 178 (353)
+.. +|+.|++++|. ++.++ . .+++|++|++++|... .+|. .+++|+.|++++|.++.+|. +. ++|
T Consensus 118 l~~--~L~~L~Ls~N~-l~~lp---~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L 182 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQ-LTMLP---E--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESL 182 (571)
T ss_dssp CCT--TCCEEECCSSC-CSCCC---C--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTC
T ss_pred hhc--CCCEEECCCCc-CCCCC---C--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCC
Confidence 333 99999999874 44443 2 6789999999996544 4665 57899999999999998887 55 899
Q ss_pred CEEeccCCCCCcccCccccCCCCC-------CEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhcc
Q 043910 179 LHLGLRDCKRLKSLPKGLCKLKSL-------KFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLS 246 (353)
Q Consensus 179 ~~L~l~~~~~~~~l~~~~~~l~~L-------~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~ 246 (353)
++|++++| .++.+|. +.. +| +.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 183 ~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 183 EALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99999985 5667877 544 67 9999999999999988888999999999999987 6676666654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=156.95 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=105.2
Q ss_pred CCccEEecCCCcCcCCCCCCccc--cCCccCcEEeecCCCCCcccc----hhhhcCCCccEEEccCccCcccC-ccccCC
Q 043910 103 CKLSQIITAARNFVTKTPNPSFI--RSLNKLTILNLSGCSQLKRLP----AEILSAGNMEEMILNGTAIEELP-SSIECL 175 (353)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l 175 (353)
++|++|++++|.... .. ...+ ..+++|++|++++|...+..+ ..+..+++|++|++++|.++.++ ..+..+
T Consensus 91 ~~L~~L~l~~n~l~~-~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITG-TM-PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBS-CC-CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEecc-ch-hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456666666654321 21 1222 556666666666655444322 22334666666666666666443 355566
Q ss_pred CCCCEEeccCCCCCcc--cC--ccccCCCCCCEEEeeCccCCccCcc----cCCCCCCcEEEeeCCCCccc-chhHhhc-
Q 043910 176 SRLLHLGLRDCKRLKS--LP--KGLCKLKSLKFLILNGCGITQLPEN----LGQLFSLEEFCLRKTKFEKI-PTNVIHL- 245 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~--l~--~~~~~l~~L~~L~l~~~~i~~~~~~----~~~l~~L~~L~l~~~~l~~l-~~~l~~l- 245 (353)
++|++|++++|...+. ++ ..+..+++|++|++++|.++.++.. ++.+++|++|++++|.+... |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 6666666666543321 21 1234566666666666666544331 34556666666666666643 4444444
Q ss_pred --cCCceeccccccccccCCCC-CCCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 246 --SRLHSFCLSYCERLQSLPKL-PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 246 --~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
++|++|++++|. ++.+|.. +++|+.|+++++ .++.++.. ..+++|+.|++++++
T Consensus 249 ~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQP---DELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCCT---TSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCchh---hhCCCccEEECcCCC
Confidence 466666666643 3355542 356666666665 34444331 234556666666653
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=2e-17 Score=142.44 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=73.6
Q ss_pred ceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEcc
Q 043910 82 LVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILN 161 (353)
Q Consensus 82 L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 161 (353)
.+.++++++.++.++..+. ++++.|+++++. ++... ...+..+++|++|++++|...+..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3444444444444443322 344445554432 11111 1234444455555555443333333334444455555555
Q ss_pred CccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCccc
Q 043910 162 GTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 162 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l 238 (353)
+|.++.++. .+..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+..+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 554444332 2344445555555443 2333332 23444455555555554444433 244444555555555544433
Q ss_pred ch-hHhhccCCceeccccc
Q 043910 239 PT-NVIHLSRLHSFCLSYC 256 (353)
Q Consensus 239 ~~-~l~~l~~L~~L~l~~~ 256 (353)
+. .+..+++|+.|++++|
T Consensus 171 ~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHHhCCCCCCEEEeeCC
Confidence 32 3344444555555443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=8.1e-18 Score=148.13 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=80.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|+++++.++.++.+..+++|+.|++++|.++.++. +..+++|+.|++++|. ++ ..+.+..+++|++|++++|
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~---~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VK---DLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC---CGGGGTTCTTCCEEECTTS
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CC---CChhhccCCCCCEEECCCC
Confidence 55555555555555444445555555555555554443 4445555555555442 11 1223445555555555554
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|. ++.++. +..+++|+.|++++|.++.++. +
T Consensus 123 ~i-~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 123 GI-SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp CC-CCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred cC-CCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCChh-h
Confidence 32 2222 244455555555555555544 344455555555555432 333332 4455555555555555554433 4
Q ss_pred CCCCCCcEEEeeCCCCc
Q 043910 220 GQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~ 236 (353)
..+++|+.|++++|++.
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 44555555555555443
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3e-18 Score=150.88 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=153.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+..+.+....++.+.....+++|+.|++++|.+..++ .+..+++|+.|++++|. ++.. +.+..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDI---KPLANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCC---cccccCCCCCEEECCCC
Confidence 3334455555555555556889999999999998885 47789999999999884 3333 34889999999999997
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++. +..+++|++|++++|.++.+ +.+..+++|++|++++|. ++.+ ..+..+++|+.|++++|.++.++. +
T Consensus 101 ~l-~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l 174 (291)
T 1h6t_A 101 KV-KDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-L 174 (291)
T ss_dssp CC-CCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred cC-CCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-h
Confidence 54 44554 88999999999999999987 468889999999999864 5555 468899999999999999998876 8
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
..+++|+.|++++|.+..++. +..+++|+.|++++|+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 899999999999999998865 78899999999999753
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.3e-17 Score=159.06 Aligned_cols=182 Identities=20% Similarity=0.285 Sum_probs=151.3
Q ss_pred ccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.++.|+++++.++.+|... +++|+.|++++|.++.++ ..+++|+.|++++|. ++.++. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~---l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE---LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch---hhc--CCCEEECCC
Confidence 4889999999999998644 489999999999999887 457999999999984 444432 433 999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~ 218 (353)
|... .+|. .+++|+.|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 7554 4776 68999999999999999886 57899999999964 666887 65 899999999999999888
Q ss_pred cCCCCCC-------cEEEeeCCCCcccchhHhhccCCceeccccccccccCCC
Q 043910 219 LGQLFSL-------EEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK 264 (353)
Q Consensus 219 ~~~l~~L-------~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~ 264 (353)
+.. +| +.|++++|.++.+|..+..+++|+.|++++|+..+.+|.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 554 77 999999999999999898999999999999876555443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.1e-18 Score=140.68 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=105.6
Q ss_pred CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 78 HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
.+++|+.|++++|.++.++ .+..+++|+.|++++| .++ ..+.+..+++|++|++++|......+..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 4567777777777777665 5666777777777776 222 2346677778888888886665555666777778888
Q ss_pred EEccCccCcc-cCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 158 MILNGTAIEE-LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 158 L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
|++++|.++. .+..+..+++|++|++++|..++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 8888887773 55667777788888887765466665 4677777777777777777666 4667777777777777654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=3e-17 Score=148.43 Aligned_cols=212 Identities=15% Similarity=0.130 Sum_probs=125.3
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCccc-cCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEe
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQ-LGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~-l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 135 (353)
+++|++++|+++.+|. +..+++|+.|+|++|.+.+ ++.. +..+++++++....++.++.++ ...+..+++|++|+
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLL 110 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccccccc
Confidence 6777777777776663 3366777777777776643 4432 3446666665555555555443 34566677777777
Q ss_pred ecCCCCCcccchhhhcCCCccEEEccC-ccCcccCc-cccCC-CCCCEEeccCCCCCcccCccccCCCCCCEEEeeC-cc
Q 043910 136 LSGCSQLKRLPAEILSAGNMEEMILNG-TAIEELPS-SIECL-SRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG-CG 211 (353)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~-~~~~l-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~-~~ 211 (353)
+++|......+..+....++..+++.+ +.+..++. .+..+ ..+++|++++ +.++.++.......+|+.+++.+ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCc
Confidence 777544333333344455666666654 35555544 23333 3566677776 34555665554556677777754 45
Q ss_pred CCccCc-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCC--CCCCcceeecC
Q 043910 212 ITQLPE-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK--LPCNLKELDAD 275 (353)
Q Consensus 212 i~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~ 275 (353)
++.+|. .+..+++|+.|++++|+++.+|.. .+.+|+.|.+.++..++.+|. .+++|+.+++.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 666664 356677777777777777766652 345566666666666666664 34566666664
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=6.9e-20 Score=177.21 Aligned_cols=279 Identities=14% Similarity=0.071 Sum_probs=149.5
Q ss_pred hcCCCCcEEEeeeCCCCCCccceeecCCCC-CCCccceEeecccCCCCCC-----C-CCCCCCceEEEccCCCccccCCC
Q 043910 26 TKMRKLRFLKFYNSSINGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSLP-----S-ITHPAKLVLLEVPHSNIQQLGDG 98 (353)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~-----~-~~~~~~L~~L~L~~~~i~~l~~~ 98 (353)
..+++|++|++++|.+++..... ..... ....|++|+++++.++.+. . ...+++|+.|++++|.+..++..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~--l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKW--LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHH--HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred hhCCCCCEEECccccccCcchhH--HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 46888888888888664321100 00001 1233777777777765332 1 11467777777777766543322
Q ss_pred C---------------------------cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhh
Q 043910 99 G---------------------------QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEIL 150 (353)
Q Consensus 99 ~---------------------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 150 (353)
+ ..+++|+.+++.++. .......+..+++|++|++++|....... ..+.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 2 333444444444431 11112345677888888888876332222 3346
Q ss_pred cCCCccEEEccCccCc--ccCccccCCCCCCEEeccC----------CCCCcc--cCccccCCCCCCEEEeeCccCCc-c
Q 043910 151 SAGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRD----------CKRLKS--LPKGLCKLKSLKFLILNGCGITQ-L 215 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~----------~~~~~~--l~~~~~~l~~L~~L~l~~~~i~~-~ 215 (353)
.+++|+.|+++ +.+. .++.....+++|++|++++ |+.++. ++.....+++|++|+++.+.++. .
T Consensus 316 ~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 316 KCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred hCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 67888888887 3333 3444445677788888874 555543 22223456777777776666652 2
Q ss_pred CcccC-CCCCCcEEEee----CCCCcc------cchhHhhccCCceeccccccc-c-----ccCCCCCCCcceeecCCCc
Q 043910 216 PENLG-QLFSLEEFCLR----KTKFEK------IPTNVIHLSRLHSFCLSYCER-L-----QSLPKLPCNLKELDADHCA 278 (353)
Q Consensus 216 ~~~~~-~l~~L~~L~l~----~~~l~~------l~~~l~~l~~L~~L~l~~~~~-l-----~~l~~~~~~L~~L~l~~c~ 278 (353)
+..+. .+++|+.|+++ .+.++. ++..+.++++|++|+++.|.. + ..+...+++|+.|++++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 22232 25677777775 334443 233355567777777755432 1 1122234566666666553
Q ss_pred CccccCccccccccccccEEEecCCccCchHHHH
Q 043910 279 ALESLSDLFSISYDYYIRCFELSTNYKLDRNELR 312 (353)
Q Consensus 279 ~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~ 312 (353)
+++.........+++|+.|++++|. +++....
T Consensus 475 -l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 475 -ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp -SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred -CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence 4433322233445566666666665 4444333
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=3.9e-19 Score=162.98 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=110.1
Q ss_pred CCCCceEEEccCCCcccc-----CCCCcCCCCccEEecCCCc--CcCCCCCCc-------cccCCccCcEEeecCCCCCc
Q 043910 78 HPAKLVLLEVPHSNIQQL-----GDGGQHHCKLSQIITAARN--FVTKTPNPS-------FIRSLNKLTILNLSGCSQLK 143 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l-----~~~~~~~~~L~~L~l~~~~--~l~~~~~~~-------~~~~l~~L~~L~l~~~~~~~ 143 (353)
.+++|+.|++++|.+... ...+..+++|+.|++++|. .++... +. .+..+++|++|++++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI-PEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS-HHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccch-hHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345566666666555431 1223445566666665541 111100 00 12455666666666654433
Q ss_pred ----ccchhhhcCCCccEEEccCccCcc-----cCccccCC---------CCCCEEeccCCCCC-cccC---ccccCCCC
Q 043910 144 ----RLPAEILSAGNMEEMILNGTAIEE-----LPSSIECL---------SRLLHLGLRDCKRL-KSLP---KGLCKLKS 201 (353)
Q Consensus 144 ----~~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~l~---~~~~~l~~ 201 (353)
.++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|... ..++ ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 244455556666666666665542 22222223 56666666664432 1222 23445556
Q ss_pred CCEEEeeCccCC--c----cCcccCCCCCCcEEEeeCCCC-----cccchhHhhccCCceecccccccccc----CCC--
Q 043910 202 LKFLILNGCGIT--Q----LPENLGQLFSLEEFCLRKTKF-----EKIPTNVIHLSRLHSFCLSYCERLQS----LPK-- 264 (353)
Q Consensus 202 L~~L~l~~~~i~--~----~~~~~~~l~~L~~L~l~~~~l-----~~l~~~l~~l~~L~~L~l~~~~~l~~----l~~-- 264 (353)
|+.|++++|.++ . .+..+..+++|+.|++++|.+ ..++..+..+++|++|++++|..-.. ++.
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 666666666655 1 222455556666666666665 23455555666666666666542111 121
Q ss_pred ---CCCCcceeecCCCcCccc-----cCccccccccccccEEEecCCc
Q 043910 265 ---LPCNLKELDADHCAALES-----LSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 265 ---~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
.+++|+.|++++|. ++. ++.... ..+++|+.|++++|+
T Consensus 269 ~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNE-IELDAVRTLKTVID-EKMPDLLFLELNGNR 314 (386)
T ss_dssp HTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-HHCTTCCEEECTTSB
T ss_pred hhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-hcCCCceEEEccCCc
Confidence 14556666666653 333 322211 123556666666664
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=7.8e-19 Score=169.80 Aligned_cols=282 Identities=16% Similarity=0.083 Sum_probs=160.7
Q ss_pred HHHHhc-CCC-CcEEEeeeCCCCCCccceeecCCCC-CCCccceEeecccCCCCCCC------CCCCCCceEEEccCCCc
Q 043910 22 SDTFTK-MRK-LRFLKFYNSSINGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSLPS------ITHPAKLVLLEVPHSNI 92 (353)
Q Consensus 22 ~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~------~~~~~~L~~L~L~~~~i 92 (353)
...+.. +++ |++|++++|... .. ....... ..+.|++|++++|.+..... ...+++|+.|++++|.+
T Consensus 129 ~~~l~~~~~~~L~~L~L~~~~~~--~~--~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 129 LDRLAKARADDLETLKLDKCSGF--TT--DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp HHHHHHHHGGGCCEEEEESCEEE--EH--HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred HHHHHHhccccCcEEECcCCCCc--CH--HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence 344444 444 999999998621 10 0111111 22449999999998654331 12578999999999988
Q ss_pred cc-----cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC--------------------------CC
Q 043910 93 QQ-----LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC--------------------------SQ 141 (353)
Q Consensus 93 ~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~--------------------------~~ 141 (353)
+. ++.....+++|+.|++++|.. ... ...+..+++|++|+++.+ ..
T Consensus 205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 205 AKISPKDLETIARNCRSLVSVKVGDFEI-LEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp SSCCHHHHHHHHHHCTTCCEEECSSCBG-GGG--HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC
T ss_pred CccCHHHHHHHHhhCCCCcEEeccCccH-HHH--HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc
Confidence 63 333345689999999999753 111 123444455555554431 12
Q ss_pred CcccchhhhcCCCccEEEccCccCc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeC----------
Q 043910 142 LKRLPAEILSAGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG---------- 209 (353)
Q Consensus 142 ~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~---------- 209 (353)
...+|..+..+++|++|++++|.++ .++..+..+++|++|+++.+.....++.....+++|++|++++
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 2334444455666666666666654 2223345666666666663211112233334566777777773
Q ss_pred -ccCC--ccCcccCCCCCCcEEEeeCCCCc-ccchhHhh-ccCCceecccc---ccccccCCC---------CCCCccee
Q 043910 210 -CGIT--QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIH-LSRLHSFCLSY---CERLQSLPK---------LPCNLKEL 272 (353)
Q Consensus 210 -~~i~--~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~-l~~L~~L~l~~---~~~l~~l~~---------~~~~L~~L 272 (353)
+.++ .++.....+++|++|+++.+.++ ..+..+.. +++|+.|++++ |+.++..|. .+++|+.|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 3444 22332344677777777767666 33344443 77788887763 445554321 25678888
Q ss_pred ecCCCcC-ccccCccccccccccccEEEecCCccCchHHH
Q 043910 273 DADHCAA-LESLSDLFSISYDYYIRCFELSTNYKLDRNEL 311 (353)
Q Consensus 273 ~l~~c~~-l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 311 (353)
++++|.+ +++.........+++|+.|++++|. +++...
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence 8876654 4444333333446778888888774 555443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.9e-17 Score=159.51 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=131.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|+.|+++++.+..++.+..+++|+.|+|++|.+..++. +..+++|+.|++++|. ++. .+.+..+++|++|++++|
T Consensus 45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~---l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKD---LSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCC---CTTSTTCTTCCEEECTTS
T ss_pred CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCC---ChhhccCCCCCEEEecCC
Confidence 88888888888888877788889999998888887765 6778888888888874 332 346778888888888886
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
... .++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. +..+++ +..+++|+.|++++|.++.++. +
T Consensus 120 ~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l 193 (605)
T 1m9s_A 120 GIS-DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-L 193 (605)
T ss_dssp CCC-CCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CCC-CCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCCChH-H
Confidence 543 343 477888888888888888877 567788888888888864 444444 7788888888888888887754 7
Q ss_pred CCCCCCcEEEeeCCCCcccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIP 239 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~ 239 (353)
..+++|+.|++++|.+...|
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCTTCSEEECCSEEEECCC
T ss_pred ccCCCCCEEEccCCcCcCCc
Confidence 78888888888888776443
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=1.1e-16 Score=155.69 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=177.3
Q ss_pred HHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCcccc---CCCCc
Q 043910 24 TFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQL---GDGGQ 100 (353)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l---~~~~~ 100 (353)
.+..+.+|+.|++.+|.+.... ......++.+.+.++.....+....+++|+.+++++|.+... +....
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~--------~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFP--------TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCC--------CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccchhhhhhhcccccccCcC--------cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 3566788999999998764321 112233888888888877777777889999999999887643 22344
Q ss_pred CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCccc-CccccCCCCC
Q 043910 101 HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEEL-PSSIECLSRL 178 (353)
Q Consensus 101 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L 178 (353)
...+++.+++..+..... ...+..+++|+.+++..++.....+ ..+..+.+++.++++.|.+..+ +..+..++++
T Consensus 395 ~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp SCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhccccccccc---cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 577888888887754321 2356678888888888766544433 3466788888899988888844 4456778888
Q ss_pred CEEeccCCCCCcc-cCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccc
Q 043910 179 LHLGLRDCKRLKS-LPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSY 255 (353)
Q Consensus 179 ~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~ 255 (353)
++|++++|..... .|..+..+++|++|++++|+++.+ |..+..+++|++|++++|++..++. .+.++++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 9999988765543 556788888899999999888865 4567888889999999998886644 577888899999988
Q ss_pred ccccccCCCC----CCCcceeecCCCc
Q 043910 256 CERLQSLPKL----PCNLKELDADHCA 278 (353)
Q Consensus 256 ~~~l~~l~~~----~~~L~~L~l~~c~ 278 (353)
|...+..|.. +++|+.|++++++
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 6544433432 3578888888754
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.9e-17 Score=156.09 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=87.7
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
.+++|+.|++++|.+... +.+..++ |+.|+|++|.+..++.+..+++|+.|+|++|.+..++ .+..+++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l--------~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--------QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--------TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred cCCCCCEEECcCCCCCCC--------hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 455555555555554321 1222233 5566666655555555445556666666665555543 34455556
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
+.|++++|. ++ ..+.+..+++|+.|++++|... .+ ..+..+++|+.|++++|.++.+++ +..+++|+.|++++
T Consensus 112 ~~L~Ls~N~-l~---~l~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 112 KSLSLEHNG-IS---DINGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp CEEECTTSC-CC---CCGGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CEEEecCCC-CC---CCccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcC
Confidence 666665553 11 1234555556666666554332 22 235555556666666665555443 55555666666655
Q ss_pred CCCCcccCccccCCCCCCEEEeeCccCCc
Q 043910 186 CKRLKSLPKGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 186 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~ 214 (353)
| .++.++ .+..+++|+.|++++|.+..
T Consensus 185 N-~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 185 N-HISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp S-CCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred C-CCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 3 233343 35555556666666555543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.9e-16 Score=132.33 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=88.3
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCC
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSL 202 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L 202 (353)
+..+++|++|++++|...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcC
Confidence 44555566666665433322222345566666666666666655543 4566777777777643 444443 45667777
Q ss_pred CEEEeeCccCCccCcc-cCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCCc
Q 043910 203 KFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCA 278 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~ 278 (353)
+.|++++|.++.++.. +..+++|+.|++++|.+. +.+++|+.|++..|...+.+|.....+.. ++..|.
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~-~~~~C~ 196 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP-DSAKCS 196 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT-TCSBBT
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC-Cccccc
Confidence 7777777777766543 566777778887777653 24556777777777666677765554433 344443
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=2.9e-18 Score=155.85 Aligned_cols=243 Identities=12% Similarity=0.061 Sum_probs=133.9
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCC-CC-ccceEeecccCCCCCC--CCCC-----CC
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPV-FP-EIRYLFWHGYPLKSLP--SITH-----PA 80 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~-~L~~L~l~~~~~~~l~--~~~~-----~~ 80 (353)
++++........++.+...++|++|++++|.+++...... ...+. .+ .|++|++++|.++... .+.. .+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL--IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH--HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH--HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4555555445555666666668888888888755332100 01111 22 3777777777766543 1222 26
Q ss_pred CceEEEccCCCccccCCC-----CcCC-CCccEEecCCCcCcCCCCCCcc----ccC-CccCcEEeecCCCCCc----cc
Q 043910 81 KLVLLEVPHSNIQQLGDG-----GQHH-CKLSQIITAARNFVTKTPNPSF----IRS-LNKLTILNLSGCSQLK----RL 145 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~~-----~~~~-~~L~~L~l~~~~~l~~~~~~~~----~~~-l~~L~~L~l~~~~~~~----~~ 145 (353)
+|+.|++++|.++..... +..+ ++|+.|++++|. ++... ... +.. .++|++|++++|.... .+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 777777777777654321 2233 677777777764 23222 111 222 2477777777765442 22
Q ss_pred chhhhcCC-CccEEEccCccCcccCc-----cccCC-CCCCEEeccCCCCCcc-----cCccccC-CCCCCEEEeeCccC
Q 043910 146 PAEILSAG-NMEEMILNGTAIEELPS-----SIECL-SRLLHLGLRDCKRLKS-----LPKGLCK-LKSLKFLILNGCGI 212 (353)
Q Consensus 146 ~~~~~~~~-~L~~L~l~~~~i~~l~~-----~~~~l-~~L~~L~l~~~~~~~~-----l~~~~~~-l~~L~~L~l~~~~i 212 (353)
+..+...+ +|++|++++|.++.... .+..+ ++|++|++++|. ++. ++..+.. .++|++|++++|.+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 33334444 77777777777764322 33344 477777777754 333 3333433 34677777777776
Q ss_pred CccC-----cccCCCCCCcEEEeeCCCCcc--------cchhHhhccCCceecccccc
Q 043910 213 TQLP-----ENLGQLFSLEEFCLRKTKFEK--------IPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 213 ~~~~-----~~~~~l~~L~~L~l~~~~l~~--------l~~~l~~l~~L~~L~l~~~~ 257 (353)
+..+ ..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 5332 234556677777777776322 22233455566666666654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-16 Score=132.57 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=101.9
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcc-cCccccCCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE-LPSSIECLSRL 178 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L 178 (353)
..+++|+.|+++++. ++. .+.+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~-i~~---l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTD---LTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSC-CSC---CTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCC-ccC---hHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 346677777777753 222 235667777788887776 333333 46677777777777777773 56667777777
Q ss_pred CEEeccCCCCCcccCccccCCCCCCEEEeeCcc-CCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG-ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 179 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
++|++++|...+..+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 777777765444455566777777777777776 66665 4667777777777777777665 56677777777777753
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=3e-18 Score=155.75 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=128.6
Q ss_pred EEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC------CCCCC-CceEEEccCCCccccCC-CCcC---
Q 043910 34 LKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS------ITHPA-KLVLLEVPHSNIQQLGD-GGQH--- 101 (353)
Q Consensus 34 L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~------~~~~~-~L~~L~L~~~~i~~l~~-~~~~--- 101 (353)
+.+++|.+++..++. +..+. |++|++++|.++..+. +..++ +|+.|++++|.+..... .+..
T Consensus 3 ~~ls~n~~~~~~~~~------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF------TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCTTCCHHHHH------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred cccccccchHHHHHH------HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 566777776644322 22234 8888888888776552 22455 78888888888776432 1222
Q ss_pred --CCCccEEecCCCcCcCCCCCCc----cccCC-ccCcEEeecCCCCCcccchhhh----c-CCCccEEEccCccCc---
Q 043910 102 --HCKLSQIITAARNFVTKTPNPS----FIRSL-NKLTILNLSGCSQLKRLPAEIL----S-AGNMEEMILNGTAIE--- 166 (353)
Q Consensus 102 --~~~L~~L~l~~~~~l~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~i~--- 166 (353)
+++|++|++++|. ++... .. .+..+ ++|++|++++|......+..+. . .++|++|++++|.++
T Consensus 77 ~~~~~L~~L~Ls~n~-l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 77 AIPANVTSLNLSGNF-LSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp TSCTTCCEEECCSSC-GGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred ccCCCccEEECcCCc-CChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 2778888888775 33221 11 23344 6788888888654333332322 2 357888888888777
Q ss_pred --ccCccccCCC-CCCEEeccCCCCCcccCc----cccCC-CCCCEEEeeCccCCc-----cCcccCC-CCCCcEEEeeC
Q 043910 167 --ELPSSIECLS-RLLHLGLRDCKRLKSLPK----GLCKL-KSLKFLILNGCGITQ-----LPENLGQ-LFSLEEFCLRK 232 (353)
Q Consensus 167 --~l~~~~~~l~-~L~~L~l~~~~~~~~l~~----~~~~l-~~L~~L~l~~~~i~~-----~~~~~~~-l~~L~~L~l~~ 232 (353)
.++..+..++ +|++|++++|......+. .+..+ ++|+.|++++|.++. ++..+.. .++|++|++++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 2334445554 788888887643222222 23344 478888888887764 4544444 34788888888
Q ss_pred CCCcccc-----hhHhhccCCceecccccc
Q 043910 233 TKFEKIP-----TNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 233 ~~l~~l~-----~~l~~l~~L~~L~l~~~~ 257 (353)
|.+...+ ..+..+++|+.|++++|.
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 8776332 223456777777777764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.4e-16 Score=130.08 Aligned_cols=177 Identities=20% Similarity=0.246 Sum_probs=124.2
Q ss_pred ceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+.++..++.++.+|... .++|+.|++++|.++.++.. +..+++|++|+++++. ++.++ ...+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLP-NGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccC-hhhcCCCCCcCEEECCCC
Confidence 34555566666666332 46788888888888776654 3567888888888763 33332 234677888888888886
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccCc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 55433334467788888888888888877654 6778888999998854 445554 4778888999999888654
Q ss_pred ccCCCCCCcEEEeeCCCCc-ccchhHhhccC
Q 043910 218 NLGQLFSLEEFCLRKTKFE-KIPTNVIHLSR 247 (353)
Q Consensus 218 ~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~ 247 (353)
..++.|+.|++..|.+. .+|..++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888877 77776665543
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.4e-18 Score=168.13 Aligned_cols=282 Identities=16% Similarity=0.145 Sum_probs=131.3
Q ss_pred hcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeeccc-CCCC--CCCCC-CCCCceEEEccCCCcccc-----C
Q 043910 26 TKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGY-PLKS--LPSIT-HPAKLVLLEVPHSNIQQL-----G 96 (353)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--l~~~~-~~~~L~~L~L~~~~i~~l-----~ 96 (353)
..+++|++|++++|.+++...... .. ....|++|++.+| .++. ++... .+++|++|++++|.+... .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l--~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELI--AK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHH--HH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHH--HH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 356667777777665543221111 00 1234667777666 2322 22222 466777777777665432 2
Q ss_pred CCCcCCCCccEEecCCCc-CcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc-------Ccc-
Q 043910 97 DGGQHHCKLSQIITAARN-FVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-------IEE- 167 (353)
Q Consensus 97 ~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------i~~- 167 (353)
.....+++|+.|++++|. .++.......+..+++|++|++++|...+.++..+..+++|+.|.+.++. +..
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 222355677777777664 11100000012345677777777765444455555566666666644331 111
Q ss_pred -----------------------cCccccCCCCCCEEeccCCCCCcc--cCccccCCCCCCEEEeeCccCC--ccCcccC
Q 043910 168 -----------------------LPSSIECLSRLLHLGLRDCKRLKS--LPKGLCKLKSLKFLILNGCGIT--QLPENLG 220 (353)
Q Consensus 168 -----------------------l~~~~~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~i~--~~~~~~~ 220 (353)
++..+..+++|++|++++|. ++. +...+..+++|+.|++.+| +. .++....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 22222234555555555544 221 1112334555555555554 22 1222122
Q ss_pred CCCCCcEEEeeC---------CCCc--ccchhHhhccCCceecccccccccc-----CCCCCCCcceeecC-----CCcC
Q 043910 221 QLFSLEEFCLRK---------TKFE--KIPTNVIHLSRLHSFCLSYCERLQS-----LPKLPCNLKELDAD-----HCAA 279 (353)
Q Consensus 221 ~l~~L~~L~l~~---------~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~-----l~~~~~~L~~L~l~-----~c~~ 279 (353)
.+++|++|++.+ +.++ .+......+++|+.|.+.+ +.++. +...+++|+.|++. +|..
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 345555555522 2232 1111122355555554332 22221 11124567777776 5666
Q ss_pred ccccCcc----ccccccccccEEEecCCccCchHHHHhHHH
Q 043910 280 LESLSDL----FSISYDYYIRCFELSTNYKLDRNELRSILE 316 (353)
Q Consensus 280 l~~~~~~----~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~ 316 (353)
+++.+.. .....+++|+.|++++ .+.+.....+..
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH
Confidence 6643321 1123456677777755 566555544433
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.8e-17 Score=140.50 Aligned_cols=166 Identities=25% Similarity=0.242 Sum_probs=107.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+..++++++.++.++....+++|+.|++++|.++.++ .+..+++|+.|++++|. ++.. +.+..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDL---SPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCC---GGGTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCC---hhhccCCCCCEEECCCC
Confidence 6666777777776665556777777777777777665 45667777777777663 3322 23667777777777775
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. +.++. +.. ++|+.|++++|.++.++ .+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.+ ..+
T Consensus 96 ~l-~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RL-KNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CC-SCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred cc-CCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 43 33443 222 67777777777777654 46667777777777643 44454 466677777777777777665 446
Q ss_pred CCCCCCcEEEeeCCCCcc
Q 043910 220 GQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~ 237 (353)
..+++|+.|++++|.+..
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 666777777777776553
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.2e-16 Score=138.45 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=110.1
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCcc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLS 106 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~ 106 (353)
++++..+++.++.+++. . .+..+. |++|++++|.++.++.+..+++|+.|++++|.++.++. +..+++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-----~---~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-----V---SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-----E---CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHhcCCCcccc-----c---chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 44555666666665431 1 112222 77777777777777766677777777777777777665 66677777
Q ss_pred EEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCC
Q 043910 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDC 186 (353)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~ 186 (353)
.|++++|. ++..+ .+.. ++|++|++++|.. +.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|
T Consensus 89 ~L~L~~N~-l~~l~---~~~~-~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 89 ELSVNRNR-LKNLN---GIPS-ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EEECCSSC-CSCCT---TCCC-SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS
T ss_pred EEECCCCc-cCCcC---cccc-CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC
Confidence 77777763 33332 2333 7777777777543 3343 3667777777777777777765 5667777777777775
Q ss_pred CCCcccCccccCCCCCCEEEeeCccCCccC
Q 043910 187 KRLKSLPKGLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 187 ~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
. ++.+ ..+..+++|+.|++++|.+...|
T Consensus 161 ~-i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 161 E-ITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C-CCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred c-Ccch-HHhccCCCCCEEeCCCCcccCCc
Confidence 4 4444 44667777777777777766444
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=128.79 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=94.0
Q ss_pred EEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 84 LLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 84 ~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
.++++++.++.++..+ ...+++|+++++. ++.......+..+++|++|++++|...+..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 3444444444443322 2233445554432 222222234566677777777775544434445677777777777777
Q ss_pred cCcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCc
Q 043910 164 AIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 164 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~ 236 (353)
.++.+++ .+..+++|++|++++|......|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7776654 366778888888887554444456677788888888888888766 566777888888888888875
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=4.2e-18 Score=164.67 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=48.8
Q ss_pred HHHh-cCCCCcEEEeeeCC-CCCCccceeecCCCC-CCCccceEeecccCCCCC-----CCCC-CCCCceEEEccCCC--
Q 043910 23 DTFT-KMRKLRFLKFYNSS-INGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSL-----PSIT-HPAKLVLLEVPHSN-- 91 (353)
Q Consensus 23 ~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l-----~~~~-~~~~L~~L~L~~~~-- 91 (353)
..+. .+++|++|++++|. ++... ..... ....|++|++++|.++.. +... .+++|+.|+++++.
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~-----l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 197 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDG-----LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHH-----HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHH-----HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence 3443 57888888888873 22110 11111 123488888888775432 2222 56788888888775
Q ss_pred cc--ccCCCCcCCCCccEEecCCCc
Q 043910 92 IQ--QLGDGGQHHCKLSQIITAARN 114 (353)
Q Consensus 92 i~--~l~~~~~~~~~L~~L~l~~~~ 114 (353)
+. .+......+++|+.|++++|.
T Consensus 198 ~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 198 VSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCcEEecCCCC
Confidence 21 111122346777777777763
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=1.2e-15 Score=138.51 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=127.7
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCc--CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQ--HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
-+.++.+++.++.+|... .+.++.|+|++|.++.++...+ .+++|+.|++++|. ++.++ ...+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFIS-SEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccC-hhhccCCCCCCEEECC
Confidence 457888888888888543 4678999999999988776544 78899999998864 34333 2467788889999998
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccc----cCCCCCCEEEeeCccC
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGL----CKLKSLKFLILNGCGI 212 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~----~~l~~L~~L~l~~~~i 212 (353)
+|......+..+..+++|+.|++++|.++.+ +..+..+++|++|++++| .++.+|..+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8765444444577888899999998888866 456788888888888884 466666533 5688888888888888
Q ss_pred CccCc-ccCCCCC--CcEEEeeCCCCc
Q 043910 213 TQLPE-NLGQLFS--LEEFCLRKTKFE 236 (353)
Q Consensus 213 ~~~~~-~~~~l~~--L~~L~l~~~~l~ 236 (353)
+.+|. .+..++. ++.|++++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 87763 3455554 477888888875
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=2.3e-15 Score=126.82 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=83.6
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCccccCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPKGLCKLKSL 202 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 202 (353)
.+..+++|++|++++|......|..+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 455667777777777655555566677788888888888888877664 4678888888888855444345567788888
Q ss_pred CEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 203 KFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888888887664 4777888888888888875
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.8e-15 Score=137.20 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=83.2
Q ss_pred eEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCcccc-CCccCcEEeecCCCCCcccchhhhcCCCccEEEcc
Q 043910 83 VLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIR-SLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILN 161 (353)
Q Consensus 83 ~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 161 (353)
+.++++++.++.+|..+ ...++.|++++|. ++..+ ...+. .+++|++|++++|......+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555554432 2345555555542 22222 12233 55555556655543333333345555556666665
Q ss_pred CccCcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc----CCCCCCcEEEeeCCCCc
Q 043910 162 GTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL----GQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 162 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~----~~l~~L~~L~l~~~~l~ 236 (353)
+|.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555554443 3455555556665554322222344555555566666555555554432 34555555666555555
Q ss_pred ccch-hHhhccC--Cceeccccc
Q 043910 237 KIPT-NVIHLSR--LHSFCLSYC 256 (353)
Q Consensus 237 ~l~~-~l~~l~~--L~~L~l~~~ 256 (353)
.++. .+..++. ++.|++++|
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSS
T ss_pred ccCHHHhhhccHhhcceEEecCC
Confidence 4443 3444443 244555553
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=7.5e-15 Score=124.46 Aligned_cols=111 Identities=25% Similarity=0.330 Sum_probs=63.3
Q ss_pred cccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCccccCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPKGLCKLKS 201 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 201 (353)
.+..+++|++|++++|.. +.++ ..+..+++|+.|++++|.++.++.. +..+++|++|++++| .++.+|..+..+++
T Consensus 59 ~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~ 136 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTH 136 (229)
T ss_dssp TTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTT
T ss_pred HhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCC
Confidence 344455555555555433 2333 2344555666666666666655443 455666666666653 34456655666666
Q ss_pred CCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 202 LKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 202 L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
|+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666666666665553 3556667777777777654
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=6.6e-18 Score=161.71 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=140.7
Q ss_pred CCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcC------------cCCCCCCccccCCccCcEEe-ecCCCCCc
Q 043910 77 THPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNF------------VTKTPNPSFIRSLNKLTILN-LSGCSQLK 143 (353)
Q Consensus 77 ~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~------------l~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 143 (353)
+..++|+.|+|++|+++.+|..+..+++|+.|+++++.. .... ....++.+++|+.|+ ++.+ ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhc-ccc
Confidence 467899999999999999998889999999999865431 1111 123567778888887 4442 222
Q ss_pred ccch------hhh--cCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc
Q 043910 144 RLPA------EIL--SAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL 215 (353)
Q Consensus 144 ~~~~------~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~ 215 (353)
.++. .+. ....|+.|++++|.++.+|. ++.+++|++|++++| .++.+|..++.+++|+.|++++|.++.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCC
Confidence 2211 111 12368999999999999886 889999999999985 4668898899999999999999999998
Q ss_pred CcccCCCCCCcEEEeeCCCCccc--chhHhhccCCceeccccccccccCC
Q 043910 216 PENLGQLFSLEEFCLRKTKFEKI--PTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
| .++.+++|+.|++++|.+..+ |..++.+++|+.|++++|+ ++.+|
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 8 689999999999999999976 7889999999999999965 44444
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.3e-15 Score=122.68 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=88.1
Q ss_pred ccCcEEeecCCCCC-cccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEe
Q 043910 129 NKLTILNLSGCSQL-KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLIL 207 (353)
Q Consensus 129 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 207 (353)
++|++|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 56777777775543 35665566677777777777777766 56667777777777775544445555556777777777
Q ss_pred eCccCCccC--cccCCCCCCcEEEeeCCCCcccch----hHhhccCCceecccccc
Q 043910 208 NGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPT----NVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 208 ~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~~ 257 (353)
++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 777777655 567777778888888877776654 56677778888777753
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=1.5e-14 Score=122.59 Aligned_cols=150 Identities=23% Similarity=0.269 Sum_probs=123.0
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++.+++.++.+|... .++|+.|++++|.++++. ..+..+++|+.|++++|. ++.++ ...+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCC
Confidence 667888888888888643 489999999999999874 456678999999999875 34443 34578899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~ 213 (353)
|......+..+..+++|+.|++++|.++.+|..+..+++|++|++++| .++.++ ..+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 765544445578899999999999999999999999999999999996 456666 46888999999999999876
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=8.8e-15 Score=123.23 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=120.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC--CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD--GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
-+.++++++.++.+|... .+.++.|++++|.++.++. .+..+++|+.|++++|. ++.++ ...+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECC
Confidence 457888888888888543 4567899999999988743 35678999999998875 44443 3468889999999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 213 (353)
+|...+..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|..+..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9776655566688899999999999999976 567889999999999996544444778889999999999999765
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.6e-15 Score=119.55 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=96.5
Q ss_pred CccCcEEeecCCCCC-cccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEE
Q 043910 128 LNKLTILNLSGCSQL-KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLI 206 (353)
Q Consensus 128 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 206 (353)
.++|++|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 367888888887654 46776677788888888888888876 6677888888888888654444666666788888888
Q ss_pred eeCccCCccC--cccCCCCCCcEEEeeCCCCcccch----hHhhccCCceeccc
Q 043910 207 LNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPT----NVIHLSRLHSFCLS 254 (353)
Q Consensus 207 l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~ 254 (353)
+++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888654 667888888888888888876654 57788888888875
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=2.5e-14 Score=120.40 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=116.7
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
-+.++.+++.++.+|... .++|+.|++++|.++.++. .+..+++|+.|++++|. ++.+. ...+..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELA-PDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEEC-TTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcC-HHHhhCCcCCCEEECCC
Confidence 356777888888888543 3789999999999988775 55678999999999875 33332 35788899999999999
Q ss_pred CCCCcccch-hhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC
Q 043910 139 CSQLKRLPA-EILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 139 ~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~ 213 (353)
|... .+|. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|.+.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6554 5554 467899999999999999976 4568889999999999865 55554 46888999999999999764
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=9.3e-15 Score=117.65 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCceEEEccCCCcc--ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCcc
Q 043910 79 PAKLVLLEVPHSNIQ--QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME 156 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 156 (353)
.++|+.|++++|.+. .++..+..+++|+.|++++|. ++.. ..+..+++|++|++++|...+.+|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 355666666666665 454444555566666665553 2222 3445555566666665544433444444455555
Q ss_pred EEEccCccCcccC--ccccCCCCCCEEeccCCCCCcccCc----cccCCCCCCEEEeeCccCCccC
Q 043910 157 EMILNGTAIEELP--SSIECLSRLLHLGLRDCKRLKSLPK----GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 157 ~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
.|++++|.++.++ ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..+|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 5555555555443 344445555555555432 233332 3444455555555544444433
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=2.9e-15 Score=147.67 Aligned_cols=150 Identities=24% Similarity=0.274 Sum_probs=113.0
Q ss_pred ccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCC
Q 043910 123 SFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSL 202 (353)
Q Consensus 123 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 202 (353)
..+..++.|++|+|++|.. ..+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|. ++.+|..++.+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 4677889999999999654 478877889999999999999999999999999999999999965 66889889999999
Q ss_pred CEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhcc-CCceeccccccccccCCCCCCCcceeecCCC
Q 043910 203 KFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLS-RLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
++|++++|.++.+|..++.+++|+.|++++|.+. .+|..+..+. .+..+++++|.....+|. .|+.|+++++
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 9999999999999988999999999999999998 5555554432 123466777655544443 4555555544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.6e-17 Score=159.00 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=144.9
Q ss_pred CccceEeecccCCCCCC-CCCCCCCceEEEccCCC-------------cc-ccCCCCcCCCCccEEecCCCcCcCCCCCC
Q 043910 58 PEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSN-------------IQ-QLGDGGQHHCKLSQIITAARNFVTKTPNP 122 (353)
Q Consensus 58 ~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~-------------i~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 122 (353)
..|+.|++++|.++.+| .+..+++|+.|++++|. .. ..+..+..+++|+.|+...++.++.....
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 34889999999988888 45578899999987653 11 12234456777777773222221111000
Q ss_pred ----ccccC--CccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccc
Q 043910 123 ----SFIRS--LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGL 196 (353)
Q Consensus 123 ----~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 196 (353)
..+.. ...|++|++++|. ++.+|. ++.+++|+.|++++|.++.+|..++.+++|++|++++| .++.+| .+
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l 504 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GG
T ss_pred hhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-cc
Confidence 00111 1258999999964 455786 99999999999999999999999999999999999995 466688 79
Q ss_pred cCCCCCCEEEeeCccCCcc--CcccCCCCCCcEEEeeCCCCcccchh----HhhccCCceecc
Q 043910 197 CKLKSLKFLILNGCGITQL--PENLGQLFSLEEFCLRKTKFEKIPTN----VIHLSRLHSFCL 253 (353)
Q Consensus 197 ~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l 253 (353)
+.+++|+.|++++|.++.+ |..++.+++|+.|++++|.+..+|+. +..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999987 88899999999999999999866542 345788888753
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=3.8e-14 Score=114.99 Aligned_cols=130 Identities=16% Similarity=0.225 Sum_probs=92.6
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCC-CccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCcc-ccCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAG-NMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKS 201 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~ 201 (353)
.+..+.+|++|++++|.. ..++. +..+. +|+.|++++|.++.+ ..+..+++|++|++++|. ++.+|.. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCC
Confidence 455666777777777543 34443 44443 788888888877776 567777888888888754 5555543 367788
Q ss_pred CCEEEeeCccCCccCc--ccCCCCCCcEEEeeCCCCcccchh----HhhccCCceecccccc
Q 043910 202 LKFLILNGCGITQLPE--NLGQLFSLEEFCLRKTKFEKIPTN----VIHLSRLHSFCLSYCE 257 (353)
Q Consensus 202 L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~~~ 257 (353)
|++|++++|.++.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888888877765 677778888888888888776664 7788888888887764
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=5.1e-15 Score=145.90 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=79.1
Q ss_pred CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 78 HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
.++.|+.|+|++|.+..++..++.+++|+.|++++|. ++.+ +..+..+++|++|+|++|... .+|..++.+++|++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL--PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC--CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc--ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 5677777777777777777666677777777777764 3323 245677777777777775543 66777777777777
Q ss_pred EEccCccCcccCccccCCCCCCEEeccCCCCCcccCcc
Q 043910 158 MILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG 195 (353)
Q Consensus 158 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~ 195 (353)
|+|++|.++.+|..++.+++|++|++++|.....+|..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 77777777777777777777777777776544444433
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=3.5e-13 Score=110.90 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=38.5
Q ss_pred cCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEE
Q 043910 151 SAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEF 228 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L 228 (353)
.+++|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 333444444444444432 23344444444444444322222222344455555555555555533 3445555556666
Q ss_pred EeeCCCCc
Q 043910 229 CLRKTKFE 236 (353)
Q Consensus 229 ~l~~~~l~ 236 (353)
++++|++.
T Consensus 132 ~L~~N~l~ 139 (192)
T 1w8a_A 132 NLASNPFN 139 (192)
T ss_dssp ECTTCCBC
T ss_pred EeCCCCcc
Confidence 66666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=7.4e-14 Score=109.98 Aligned_cols=123 Identities=23% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCceEEEccCCCcc--ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 80 AKLVLLEVPHSNIQ--QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 80 ~~L~~L~L~~~~i~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
++|+.|++++|.++ .++..+..+++|+.|++++|. ++.. ..+..+++|++|++++|...+.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45566666666655 444444555666666666552 2222 34555666666666665444445554555666666
Q ss_pred EEccCccCcccC--ccccCCCCCCEEeccCCCCCcccCc----cccCCCCCCEEEe
Q 043910 158 MILNGTAIEELP--SSIECLSRLLHLGLRDCKRLKSLPK----GLCKLKSLKFLIL 207 (353)
Q Consensus 158 L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l 207 (353)
|++++|.++.++ ..+..+++|++|++++|. ++..+. .+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 666666665443 445555566666665543 333332 3445555555544
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=2.6e-13 Score=111.71 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=102.4
Q ss_pred cEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc--ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeC
Q 043910 132 TILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS--IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG 209 (353)
Q Consensus 132 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 209 (353)
++++++++ .++.+|..+. .++++|++++|.++.++.. +..+++|++|++++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888884 4567776543 3899999999999988763 88999999999999765554577889999999999999
Q ss_pred ccCCccCc-ccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccc
Q 043910 210 CGITQLPE-NLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 210 ~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~ 258 (353)
|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99997654 478899999999999999854 66788899999999998754
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=4.2e-13 Score=110.47 Aligned_cols=124 Identities=23% Similarity=0.365 Sum_probs=80.7
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEecc
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLR 184 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~ 184 (353)
+.++++++. ++.++. . -.++|++|++++|. +..+|..+..+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 13 ~~l~~~~~~-l~~ip~--~--~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPK--G--IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSC-CSSCCS--C--CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-CCcCCC--C--CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 456665542 333331 1 12567777777753 44666667777777777777777776653 46777777777777
Q ss_pred CCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 185 DCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 185 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
+|. ++.++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 754 44443 456777777777777777776665 3666777777777777764
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=6.9e-14 Score=113.45 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=43.8
Q ss_pred hhcCCCccEEEccCccCcccCccc-cCCCCCCEEeccCCCCCcccCc--cccCCCCCCEEEeeCccCCccCcc----cCC
Q 043910 149 ILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPK--GLCKLKSLKFLILNGCGITQLPEN----LGQ 221 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~~~~~~----~~~ 221 (353)
+..+++|++|++++|.++.+|+.+ ..+++|++|++++|. ++.+|. .+..+++|+.|++++|.+..+|.. +..
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 138 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 138 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence 344444555555555555444332 445555555555532 344443 444555555555555555555442 455
Q ss_pred CCCCcEEEeeCCCCc
Q 043910 222 LFSLEEFCLRKTKFE 236 (353)
Q Consensus 222 l~~L~~L~l~~~~l~ 236 (353)
+++|+.|++++|...
T Consensus 139 l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 139 VPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCSEETTEECCHH
T ss_pred CCccceeCCCcCCHH
Confidence 556666666655543
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=7.8e-13 Score=118.28 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=56.6
Q ss_pred CCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCC-EEEeeCccCCccC-cccCCCCCCcE
Q 043910 152 AGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLK-FLILNGCGITQLP-ENLGQLFSLEE 227 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~i~~~~-~~~~~l~~L~~ 227 (353)
+++|+.+++++|.++.++. +|..+++|+.+++.++ +..++. .|..+++|+ .+++.. .++.++ ..+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 5566666666666665554 3556666666666653 444443 456666666 666655 455443 34556666666
Q ss_pred EEeeCCCCcccch-hHhhccCCceec
Q 043910 228 FCLRKTKFEKIPT-NVIHLSRLHSFC 252 (353)
Q Consensus 228 L~l~~~~l~~l~~-~l~~l~~L~~L~ 252 (353)
+++++|.+..++. .+.++++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666665544 445555555543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=5.6e-12 Score=103.68 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=63.8
Q ss_pred eEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC
Q 043910 62 YLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ 141 (353)
Q Consensus 62 ~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 141 (353)
.++++++.++.+|... .++|+.|++++|.++.++. .+..+++|++|++++|..
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~--------------------------~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK--------------------------ELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG--------------------------GGGGCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH--------------------------HhhcccCCCEEECCCCcC
Confidence 4455555555555322 2455555555555544443 344445555555555433
Q ss_pred CcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccC
Q 043910 142 LKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGI 212 (353)
Q Consensus 142 ~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i 212 (353)
.+..+..+..+++|++|++++|.++.+++ .+..+++|++|++++|. ++.+|. .+..+++|+.|++++|.+
T Consensus 67 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 33333345555556666666665555443 35556666666666533 344443 355666666666666654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=8.1e-15 Score=121.36 Aligned_cols=107 Identities=22% Similarity=0.285 Sum_probs=46.9
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
+..+++|++|++++|.. ..+| .+..+++|+.|++++|.++.+|..+..+++|++|++++| .++.+| .+..+++|+.
T Consensus 44 ~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 44444445555444322 2233 344444444444444444444444444444444444443 222233 2344444444
Q ss_pred EEeeCccCCccCc--ccCCCCCCcEEEeeCCCC
Q 043910 205 LILNGCGITQLPE--NLGQLFSLEEFCLRKTKF 235 (353)
Q Consensus 205 L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l 235 (353)
|++++|.++.++. .+..+++|++|++++|.+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4444444443322 344444444444444444
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=2.9e-11 Score=97.93 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=66.1
Q ss_pred ccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEE
Q 043910 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLI 206 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~ 206 (353)
++|++|++++|...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 4556666666443322223345566666666666666655543 4566777777777643 444443 456677777777
Q ss_pred eeCccCCccCcc-cCCCCCCcEEEeeCCCCc
Q 043910 207 LNGCGITQLPEN-LGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 207 l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~ 236 (353)
+++|.++.+|.. +..+++|++|++++|++.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 777777766654 356777777787777765
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=9e-11 Score=107.51 Aligned_cols=215 Identities=8% Similarity=0.072 Sum_probs=93.9
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCCC
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDGG 99 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~~ 99 (353)
..+|.++ +|+.+.+.++ +. .....+|....|+.+.+.. .++.++ .+..+++|+.+++++|.++.++...
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~------~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LK------SIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CC------EECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred HhhcccC-CccEEEeCCC-cc------EECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 4455554 4666655543 11 1112233332355555543 344343 2224556666666655555555555
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch-hhhcCCCccEEEccCccCcccC-ccccCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA-EILSAGNMEEMILNGTAIEELP-SSIECLSR 177 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~ 177 (353)
+.+.+|+.+.+..+ ++.+. ..+|..+++|+.+.+..+ +..++. .|.. .+|+.+.+. +.++.++ .+|..+++
T Consensus 200 F~~~~L~~l~lp~~--l~~I~-~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIG-SQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTCCCSEEECCTT--CCEEC-TTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred EeecccCEEEeCCc--hheeh-hhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCC
Confidence 55555665555432 33332 234555555665555541 222222 2223 455555552 2334332 24445555
Q ss_pred CCEEeccCCCCC----cccC-ccccCCCCCCEEEeeCccCCccC-cccCCCCCCcEEEeeCCCCcccch-hHhhccCCce
Q 043910 178 LLHLGLRDCKRL----KSLP-KGLCKLKSLKFLILNGCGITQLP-ENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHS 250 (353)
Q Consensus 178 L~~L~l~~~~~~----~~l~-~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~ 250 (353)
|+.+++.++... ..++ ..|..|++|+.+.+.. .++.++ ..+..|.+|+.+.+..+ +..+.. .+.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 555555442211 0122 2344555555555542 233332 23444445555555322 333322 23334 4444
Q ss_pred ecccc
Q 043910 251 FCLSY 255 (353)
Q Consensus 251 L~l~~ 255 (353)
+++.+
T Consensus 350 l~l~~ 354 (401)
T 4fdw_A 350 VKVEG 354 (401)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 44444
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=3.4e-11 Score=97.53 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=53.3
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCC
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSL 202 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L 202 (353)
+..+++|++|++++|...+..+..+..+++|+.|++++|.++.++.. +..+++|++|++++| .++.+|. .+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCccc
Confidence 45556666666666443322223345666777777777766655543 466777777777764 3445554 34667777
Q ss_pred CEEEeeCccCC
Q 043910 203 KFLILNGCGIT 213 (353)
Q Consensus 203 ~~L~l~~~~i~ 213 (353)
+.|++++|.+.
T Consensus 127 ~~L~l~~N~~~ 137 (177)
T 2o6r_A 127 QKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCee
Confidence 77777777655
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=4.3e-14 Score=117.00 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=90.6
Q ss_pred cccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCC
Q 043910 143 KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQL 222 (353)
Q Consensus 143 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l 222 (353)
+.+|..+..+++|++|++++|.++.+| .+..+++|++|++++| .++.+|..+..+++|+.|++++|.++.+| .+..+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 344457788888899999888888887 7788888899988885 45577776667788888999888888776 47778
Q ss_pred CCCcEEEeeCCCCcccch--hHhhccCCceeccccccccc
Q 043910 223 FSLEEFCLRKTKFEKIPT--NVIHLSRLHSFCLSYCERLQ 260 (353)
Q Consensus 223 ~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~l~ 260 (353)
++|+.|++++|.+..++. .+..+++|+.|++++|....
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 888899998888886654 67788888888888875433
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=9.8e-12 Score=111.11 Aligned_cols=258 Identities=12% Similarity=0.044 Sum_probs=146.9
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC-CCCCCCCceEEEccCCCccccCCCCcC-----
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQH----- 101 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~l~~~~~~----- 101 (353)
+.++++|.+.++-- .. +....... ...|+.|+|++|++.... .....+.+..+.+..+.|.. ..+..
T Consensus 24 ~~~l~~L~l~g~i~-~~--~~~~l~~~--l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLN-AE--DFRHLRDE--FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEEC-HH--HHHHHHHS--CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEETTE
T ss_pred hCceeEEEEecccc-HH--HHHHHHHh--hccCeEEecCcceeEEecCccccccccccccccccccCH--HHhccccccc
Confidence 55788888887411 00 00011111 233888888888876221 11122224445555443321 23344
Q ss_pred ---CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccC----cccC-cccc
Q 043910 102 ---HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAI----EELP-SSIE 173 (353)
Q Consensus 102 ---~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i----~~l~-~~~~ 173 (353)
+.+|+.+++.+ .++.++ ..+|..|++|+.+++.++.....-+..|..+.++..+....... ..+. ..+.
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~-~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIE-DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEEC-TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccCCCcEEECCc--cccchh-HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 78888888877 455554 35788888888888888654444444566666666666554211 1111 1233
Q ss_pred CCCCCC-EEeccCCCCCcc-------------------------cCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCc
Q 043910 174 CLSRLL-HLGLRDCKRLKS-------------------------LPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLE 226 (353)
Q Consensus 174 ~l~~L~-~L~l~~~~~~~~-------------------------l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~ 226 (353)
.+..|+ .+.+.....+.. .......+++|+.+++.+|.++.++. .+..+.+|+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 333443 222221111000 00000137888888888888887765 477888888
Q ss_pred EEEeeCCCCcccch-hHhhccCCc-eeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEe
Q 043910 227 EFCLRKTKFEKIPT-NVIHLSRLH-SFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFEL 300 (353)
Q Consensus 227 ~L~l~~~~l~~l~~-~l~~l~~L~-~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~ 300 (353)
++++.+| +..++. .+.+|++|+ .+++.+ .++.++. .+++|+.+++.+. .++.++...+. .|++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTC-TTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhc-CCcchhhhcc
Confidence 8888887 666655 567888888 888876 4556553 4577888887653 57777765543 4666776653
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=4.6e-11 Score=96.49 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=84.2
Q ss_pred CcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEee
Q 043910 131 LTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILN 208 (353)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~ 208 (353)
-+.++++++ .++.+|..+ .++|+.|++++|.++.+ |..+..+++|++|++++| .++.+|. .+..+++|+.|+++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 367888884 557777655 37899999999999977 456788999999999985 5666765 46789999999999
Q ss_pred CccCCccCcc-cCCCCCCcEEEeeCCCCcccch
Q 043910 209 GCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 209 ~~~i~~~~~~-~~~l~~L~~L~l~~~~l~~l~~ 240 (353)
+|.++.+|.. +..+++|+.|++++|++...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999888765 7888999999999998874443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=7.1e-11 Score=95.36 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=41.3
Q ss_pred ccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEE
Q 043910 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLI 206 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~ 206 (353)
++|++|++++|...+..|..+..+++|+.|++++|.++.+|.. +..+++|++|++++| .++.+|. .+..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 4555555555443333344445555555555555555555443 344555555555553 2333333 244555555555
Q ss_pred eeCccCC
Q 043910 207 LNGCGIT 213 (353)
Q Consensus 207 l~~~~i~ 213 (353)
+++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=6.3e-11 Score=95.27 Aligned_cols=103 Identities=27% Similarity=0.399 Sum_probs=84.2
Q ss_pred cCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEe
Q 043910 130 KLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLIL 207 (353)
Q Consensus 130 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l 207 (353)
..++++++++ .+..+|..+ .++++.|++++|.++.+ |..+..+++|++|++++|. ++.+|. .+..+++|++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 4578899984 556677655 47899999999999977 4568889999999999854 566664 5688999999999
Q ss_pred eCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 208 NGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 208 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
++|.++.++. .+..+++|+.|++++|++.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999998876 4788999999999999876
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=1.1e-10 Score=93.86 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=43.2
Q ss_pred ccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEE
Q 043910 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLI 206 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~ 206 (353)
++|++|++++|...+..|..+..+++|++|++++|.++.+|+. +..+++|++|++++| .++.++. .+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 4555555555443333344455555555555555555555443 345555555555553 2333332 355555555555
Q ss_pred eeCccCC
Q 043910 207 LNGCGIT 213 (353)
Q Consensus 207 l~~~~i~ 213 (353)
+++|.+.
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5555443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=8.9e-09 Score=94.23 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=83.5
Q ss_pred CceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhhcCCCccEE
Q 043910 81 KLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEM 158 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 158 (353)
+|+.+.+.. .++.+.. .+..|.+|+.+++.++ .++.++ ..+|. +.+|+.+.+.. + +..++ ..|..+++|+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~-~~aF~-~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLP-ASTFV-YAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEEC-TTTTT-TCCCSEEECCT-T-CCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEec-hhhEe-ecccCEEEeCC-c-hheehhhHhhCCCCCCEE
Confidence 455555553 4444433 2333555555555543 222222 12232 35555555543 1 22222 234455555555
Q ss_pred EccCccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC-----ccC-cccCCCCCCcEEEe
Q 043910 159 ILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT-----QLP-ENLGQLFSLEEFCL 230 (353)
Q Consensus 159 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~-----~~~-~~~~~l~~L~~L~l 230 (353)
.+..+ ++.++. +|.. .+|+.+.+.. .+..++ ..|..|++|+.+.+.++.+. .++ ..+..|++|+.+++
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 55543 333332 2222 4555555532 233333 24555666666666555433 222 24555556666665
Q ss_pred eCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCC
Q 043910 231 RKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHC 277 (353)
Q Consensus 231 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c 277 (353)
.+ .+..+.. .+.+|++|+.+.+..+ ++.+.. .+ +|+.+++.+.
T Consensus 308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 308 PE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 52 3444433 3445556666655432 333332 22 5555555553
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=2.3e-09 Score=96.31 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=64.4
Q ss_pred EeecCCCCCcccchhhhcCCCccEEEccC-ccCcccCc-cccCCCCCCEEeccCCCCCccc-CccccCCCCCCEEEeeCc
Q 043910 134 LNLSGCSQLKRLPAEILSAGNMEEMILNG-TAIEELPS-SIECLSRLLHLGLRDCKRLKSL-PKGLCKLKSLKFLILNGC 210 (353)
Q Consensus 134 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 210 (353)
++.++++.+..+|. +..+++|+.|+|++ |.++.+++ .+..+++|++|+|++|. ++.+ |..|..+++|+.|++++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 45555324555666 66666777777775 67776653 56677777777777754 4433 345667777777777777
Q ss_pred cCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 211 GITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 211 ~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
.++.+|........|+.|++++|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 77766654433334777777777765
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=2.8e-11 Score=109.81 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCceEEEccCCCccccC-----CCCc-CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh----
Q 043910 80 AKLVLLEVPHSNIQQLG-----DGGQ-HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI---- 149 (353)
Q Consensus 80 ~~L~~L~L~~~~i~~l~-----~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 149 (353)
+.|+.|++++|.++... ..+. ..++|+.|++++|.. +..........+++|++|++++|.....-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45666666666664321 1111 124566666665531 110000011233455666666654322211111
Q ss_pred -hcCCCccEEEccCccCcc-----cCccccCCCCCCEEeccCCCCCcc-----cCccccCCCCCCEEEeeCccCCc----
Q 043910 150 -LSAGNMEEMILNGTAIEE-----LPSSIECLSRLLHLGLRDCKRLKS-----LPKGLCKLKSLKFLILNGCGITQ---- 214 (353)
Q Consensus 150 -~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~~---- 214 (353)
...++|++|++++|.++. ++..+..+++|++|++++|. ++. ++..+..+++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 123455666666655542 22333445555555555543 221 12233344455555555555541
Q ss_pred -cCcccCCCCCCcEEEeeCCCCc
Q 043910 215 -LPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 215 -~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
++..+...++|++|++++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2222333445555555555544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.89 E-value=1.9e-10 Score=104.26 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=97.1
Q ss_pred CCCccEEecCCCcCcCCCCCCccc----c-CCccCcEEeecCCCCCcccchhh-hcCCCccEEEccCccCccc-----Cc
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFI----R-SLNKLTILNLSGCSQLKRLPAEI-LSAGNMEEMILNGTAIEEL-----PS 170 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~l-----~~ 170 (353)
.+.++.|++++|.. +... ...+ . ..++|++|++++|.........+ ..+.+|+.|++++|.++.. ..
T Consensus 71 ~~~L~~L~Ls~n~l-~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-TPVK-CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCC-CHHH-HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCC-CHHH-HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46788888888752 2110 1111 1 23688888888876543322222 2356788888888888632 11
Q ss_pred cc-cCCCCCCEEeccCCCCCcc-----cCccccCCCCCCEEEeeCccCCc-----cCcccCCCCCCcEEEeeCCCCcc--
Q 043910 171 SI-ECLSRLLHLGLRDCKRLKS-----LPKGLCKLKSLKFLILNGCGITQ-----LPENLGQLFSLEEFCLRKTKFEK-- 237 (353)
Q Consensus 171 ~~-~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~l~~-- 237 (353)
.+ ...++|++|++++|. ++. ++..+..+++|++|++++|.++. ++..+...++|++|++++|.++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 22 245778888888865 332 33345677888888888888762 34456666788888888888762
Q ss_pred ---cchhHhhccCCceecccccc
Q 043910 238 ---IPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 238 ---l~~~l~~l~~L~~L~l~~~~ 257 (353)
++..+...++|++|++++|.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhCCCCCEEeccCCC
Confidence 33445567788888888864
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=9.6e-09 Score=92.22 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=61.8
Q ss_pred eEeeccc-CCCCCCCCCCCCCceEEEccC-CCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 62 YLFWHGY-PLKSLPSITHPAKLVLLEVPH-SNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 62 ~L~l~~~-~~~~l~~~~~~~~L~~L~L~~-~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.++.+++ .++.+|.+..+++|+.|+|++ |.++.++. .+..+++|+.|++++|. ++.++ ...|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeC-HHHhcCCcCCCEEeCCC
Confidence 3455665 677777744666777777774 77777663 35567777777777663 44333 33566777777777777
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIE 166 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 166 (353)
|... .+|........|+.|++.+|.+.
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCCceEEEeeCCCcc
Confidence 5433 44433322223777777777665
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.75 E-value=9.1e-07 Score=80.76 Aligned_cols=262 Identities=15% Similarity=0.096 Sum_probs=127.8
Q ss_pred ccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCC-ccceEeeccc------------C---------CCCCC
Q 043910 17 EIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFP-EIRYLFWHGY------------P---------LKSLP 74 (353)
Q Consensus 17 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~------------~---------~~~l~ 74 (353)
...+...+|.+|++|+.+++.++ ++. + ....+... .|+.+.+... . ...+.
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l~~-----I-~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~ 154 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-VKM-----I-GRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIG 154 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCE-----E-CTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEEC
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-ceE-----c-cchhhcccccchhhcccCceeeecceeeecccccccccCccccccc
Confidence 34566789999999999999754 210 1 11122111 1333332211 0 01111
Q ss_pred --CCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhc
Q 043910 75 --SITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151 (353)
Q Consensus 75 --~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 151 (353)
.+..+++|+.+.+..+ +..+.. .+..+.+|+.+.+..+ ++.+. ..++..+..|+.+.+..+ ...+......
T Consensus 155 ~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~-~~~F~~~~~L~~i~~~~~--~~~i~~~~~~ 228 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIR-DYCFAECILLENMEFPNS--LYYLGDFALS 228 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEEC-TTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeC-chhhccccccceeecCCC--ceEeehhhcc
Confidence 1224566666666543 233332 2334566666666543 22222 234555666666555432 1122222333
Q ss_pred CCCccEEEccCccCcccC-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEe
Q 043910 152 AGNMEEMILNGTAIEELP-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 230 (353)
..+|+.+.+... ++.+. ..+..+.+++.+.+..+ ...--...+..+..++.+......+. ...+..+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKL 304 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEE
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--ccccccccccccccc
Confidence 445666555433 22222 23455666666666542 12212234555666666655443322 123455667777777
Q ss_pred eCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEec
Q 043910 231 RKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELS 301 (353)
Q Consensus 231 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~ 301 (353)
..+ +..+.. .+.+|++|+.+++.. .++.++. .+.+|+.+.+.. .++.++...+. .|.+|+.+++.
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp 374 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELP 374 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEE
T ss_pred ccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEEEC
Confidence 543 444433 455677777777753 2444443 345666666654 25555544432 45566666553
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=6.5e-07 Score=81.74 Aligned_cols=264 Identities=10% Similarity=0.050 Sum_probs=132.8
Q ss_pred cccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccCCCCCC--CCCCCCCceEEEccCCCc
Q 043910 16 EEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNI 92 (353)
Q Consensus 16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i 92 (353)
.+.++...+|.+|++|+.+.+..+ ++ .....+|.. ..|+.+.+..+ ++.++ .+..+..|+.+.+..+ +
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence 345677889999999999999753 32 122344544 34888888643 55454 2335677777666543 4
Q ss_pred cccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC-cc
Q 043910 93 QQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP-SS 171 (353)
Q Consensus 93 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~ 171 (353)
..+....+....+....+... .+.+. ..+|..+.+|+.+.+.++ ....-...|..+.+|+.+.+..+ ++.+. .+
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~~--~~~i~-~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~ 203 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPEG--VTVIG-DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYC 203 (394)
T ss_dssp CEECTTTTTTCCCSEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTT
T ss_pred eeecceeeecccccccccCcc--ccccc-hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchh
Confidence 333333333233333332221 11121 235667777777777542 22222234556666776666554 33222 23
Q ss_pred ccCCCCCCEEeccCCC--------------------CCcccC-ccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEe
Q 043910 172 IECLSRLLHLGLRDCK--------------------RLKSLP-KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230 (353)
Q Consensus 172 ~~~l~~L~~L~l~~~~--------------------~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 230 (353)
+..+..|+.+.+..+. ....+. ..+..+..|+.+.+..+...--...+..+..++.+..
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 3444444444443211 112222 1344555566555554432222233455556666555
Q ss_pred eCCCCcccchhHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEe
Q 043910 231 RKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFEL 300 (353)
Q Consensus 231 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~ 300 (353)
..+.+. ...+..+.+|+.+.+.. .++.++. .+.+|+.+++.. .++.++...+. .|.+|+.+.+
T Consensus 284 ~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~l 350 (394)
T 4fs7_A 284 GSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINF 350 (394)
T ss_dssp CSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECC
T ss_pred Cceeec--ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEE
Confidence 443221 11345677788777754 2444443 346777777753 35555544332 3555555444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=1.7e-08 Score=90.84 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=69.2
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc-ccCccc--cCCCCCCEEeccCC--C-----CCcccC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSI--ECLSRLLHLGLRDC--K-----RLKSLP 193 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~--~~l~~L~~L~l~~~--~-----~~~~l~ 193 (353)
.+..+++|+.|++++|... .++. + .+++|+.|++..+.+. .....+ ..+++|++|+++.+ . .+..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3455677777777765222 2222 2 2567777777766655 111222 25677777776421 1 111111
Q ss_pred ccc--cCCCCCCEEEeeCccCCc-cCcc---cCCCCCCcEEEeeCCCCcc-----cchhHhhccCCceeccccc
Q 043910 194 KGL--CKLKSLKFLILNGCGITQ-LPEN---LGQLFSLEEFCLRKTKFEK-----IPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 194 ~~~--~~l~~L~~L~l~~~~i~~-~~~~---~~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~ 256 (353)
..+ ..+++|++|++.+|.+.. .+.. ...+++|++|+++.|.+.. ++..+.++++|+.|++++|
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 112 246777777777776651 1111 1245677777777777652 2333345667777777665
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.2e-08 Score=91.83 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=93.8
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh--cCCCccEEEccCc--c------CcccC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL--SAGNMEEMILNGT--A------IEELP 169 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~------i~~l~ 169 (353)
..+|+|+.|.+.++..+. . +.+ .+++|++|++..|.........+. .+++|+.|+|+.+ . +..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l---~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-I---GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-C---CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeCCCCce-e---ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456788888887763222 1 223 367888888887654433333343 5788888887531 1 22222
Q ss_pred ccc--cCCCCCCEEeccCCCCCcccCcc---ccCCCCCCEEEeeCccCCc-----cCcccCCCCCCcEEEeeCCCCc-cc
Q 043910 170 SSI--ECLSRLLHLGLRDCKRLKSLPKG---LCKLKSLKFLILNGCGITQ-----LPENLGQLFSLEEFCLRKTKFE-KI 238 (353)
Q Consensus 170 ~~~--~~l~~L~~L~l~~~~~~~~l~~~---~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~l~-~l 238 (353)
..+ ..+++|++|++.+|......+.. ...+++|++|+++.|.+.. ++..+..+++|+.|++++|.++ ..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 222 35789999999887654322211 2357899999999998873 3444456789999999999887 33
Q ss_pred chhHhh-ccCCceecccccc
Q 043910 239 PTNVIH-LSRLHSFCLSYCE 257 (353)
Q Consensus 239 ~~~l~~-l~~L~~L~l~~~~ 257 (353)
...+.. + ...++++.+.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333333 2 3456666643
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=3.1e-06 Score=77.25 Aligned_cols=268 Identities=8% Similarity=0.073 Sum_probs=140.1
Q ss_pred ccccCHHHHhcCC-CCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccC---CCCCC--CCCCCCCceEEEccC
Q 043910 17 EIHLYSDTFTKMR-KLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYP---LKSLP--SITHPAKLVLLEVPH 89 (353)
Q Consensus 17 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~---~~~l~--~~~~~~~L~~L~L~~ 89 (353)
+..+...+|.+++ .|+.+.+... ++ ..-..+|.. ..|+.+.+..+. ++.+. .+..+.+|+.+.+..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC
Confidence 3455667777774 4888887653 21 112334433 337777776653 33343 223566677666654
Q ss_pred CCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 90 SNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 90 ~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+ ++.+.. .+..+.+|+.+.+... ++.+. ...+..+..|+.+.+..+ ...+........+|+.+.+..+...--
T Consensus 124 ~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~-~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~ 197 (394)
T 4gt6_A 124 S-VTEIDSEAFHHCEELDTVTIPEG--VTSVA-DGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIG 197 (394)
T ss_dssp T-CSEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEEC
T ss_pred c-cceehhhhhhhhcccccccccce--eeeec-ccceecccccccccccce--eeEeccccccccceeEEEECCcccccc
Confidence 3 444433 3345677777776533 22222 235556666666666541 222222111223455555433211111
Q ss_pred CccccCCCCCCEEeccCC-----------------------------------CCCcccC-ccccCCCCCCEEEeeCccC
Q 043910 169 PSSIECLSRLLHLGLRDC-----------------------------------KRLKSLP-KGLCKLKSLKFLILNGCGI 212 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~-----------------------------------~~~~~l~-~~~~~l~~L~~L~l~~~~i 212 (353)
..++..+.++........ ..+..+. ..|..+..|+.+.+..+..
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc
Confidence 112222333322221110 0111121 2456677788877765433
Q ss_pred CccCcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccc
Q 043910 213 TQLPENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLF 287 (353)
Q Consensus 213 ~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~ 287 (353)
.--...+.++..|+.+.+. +.+..++. .+.+|.+|+.+++.. .++.+.. .+.+|+.+.+.. +++.++...
T Consensus 278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~a 352 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESA 352 (394)
T ss_dssp EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGG
T ss_pred eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhH
Confidence 2223356677888888875 34555554 566788888888864 2555543 456788888754 467776554
Q ss_pred cccccccccEEEecCC
Q 043910 288 SISYDYYIRCFELSTN 303 (353)
Q Consensus 288 ~~~~~~~l~~l~~~~c 303 (353)
+ ..|.+|+.+++.+.
T Consensus 353 F-~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 F-SNCTALNNIEYSGS 367 (394)
T ss_dssp G-TTCTTCCEEEESSC
T ss_pred h-hCCCCCCEEEECCc
Confidence 4 35777888887654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=3.1e-08 Score=78.99 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=50.9
Q ss_pred CCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc-----CCCC---CCCcceeecCCCcCccccCcccccccccc
Q 043910 224 SLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS-----LPKL---PCNLKELDADHCAALESLSDLFSISYDYY 294 (353)
Q Consensus 224 ~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~-----l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 294 (353)
.|++||+++|.++ .-...+.++++|++|++++|..++. +... +++|++|++++|+.+++.+..... .+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence 3444444444443 1122234455555555555543322 2221 246788888888888887765554 5788
Q ss_pred ccEEEecCCccCchHHH
Q 043910 295 IRCFELSTNYKLDRNEL 311 (353)
Q Consensus 295 l~~l~~~~c~~l~~~~~ 311 (353)
|+.|++++|+.+++...
T Consensus 141 L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp CCEEEEESCTTCCCHHH
T ss_pred CCEEECCCCCCCCchHH
Confidence 88899999988887643
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.55 E-value=8.5e-06 Score=73.82 Aligned_cols=240 Identities=11% Similarity=0.099 Sum_probs=120.8
Q ss_pred cccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCC-CCCCCCceEEEccCCCccccC
Q 043910 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLG 96 (353)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~ 96 (353)
..+...+|.+|.+|+.+.+.++ ++ ..-..+|..-.+..+.+.. .++.++. .+...+|+.+++..+ +..+.
T Consensus 58 t~Ig~~aF~~C~~L~~I~lp~~-v~------~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~~~i~ 128 (379)
T 4h09_A 58 TSIGEANFNSCYNMTKVTVAST-VT------SIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-TTEIG 128 (379)
T ss_dssp EEECTTTTTTCTTCCEEEECTT-CC------EECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT-CCEEC
T ss_pred cChHHHHhhCCCCCCEEEeCCc-ce------EechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc-ccccc
Confidence 3455678888888888888653 21 1122333333455555542 2333432 223346777777653 33444
Q ss_pred CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc--------------------------------
Q 043910 97 DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR-------------------------------- 144 (353)
Q Consensus 97 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------------------------- 144 (353)
...+...+++.+.+... ++.+. ...+..+..++.+.+........
T Consensus 129 ~~~F~~~~l~~~~~~~~--v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
T 4h09_A 129 NYIFYNSSVKRIVIPKS--VTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV 205 (379)
T ss_dssp TTTTTTCCCCEEEECTT--CCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC
T ss_pred ccccccceeeeeeccce--eeccc-cchhcccccccccccccccceeecccceecccccceeccccccccccccccccce
Confidence 44444445555554432 22222 22445555565555443221100
Q ss_pred ---cchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccC-cc
Q 043910 145 ---LPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLP-EN 218 (353)
Q Consensus 145 ---~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~-~~ 218 (353)
....+..+.+++.+.+..+ ++.+ ...+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..++ ..
T Consensus 206 ~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 206 KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTT
T ss_pred eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccc
Confidence 0111223344444444332 2222 123455666666666542 34443 24556777777776543 44333 24
Q ss_pred cCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecC
Q 043910 219 LGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDAD 275 (353)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~ 275 (353)
+..+.+|+.+.+.++.+..+.. .+.+|.+|+.+.+.. .++.+.. .+.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 5667778888777777766644 556777777777753 2444433 23455555553
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=2.2e-07 Score=75.51 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=18.5
Q ss_pred ccCCccCcEEeecCC-CCCcc----cchhhhcCCCccEEEccCccCc
Q 043910 125 IRSLNKLTILNLSGC-SQLKR----LPAEILSAGNMEEMILNGTAIE 166 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~i~ 166 (353)
+...+.|++|++++| ..... +...+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 334455555555554 22211 1222333445555555555444
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=5.3e-05 Score=68.94 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=118.8
Q ss_pred cccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccCCCCCC--CCCCCCCceEEEccCCCccc
Q 043910 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQ 94 (353)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~ 94 (353)
..+...+|.+|.+|+.+.+.++-. ......+.. ..|+.+.+... +..++ ....+..|+.+.+..+ +..
T Consensus 103 ~~Ig~~aF~~c~~L~~i~~~~~~~-------~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~ 173 (394)
T 4gt6_A 103 KKIGRQAFMFCSELTDIPILDSVT-------EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTA 173 (394)
T ss_dssp CEECTTTTTTCTTCCBCGGGTTCS-------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred eEechhhchhcccceeeccCCccc-------eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeE
Confidence 345677899999998887765321 111223332 33888877543 33343 2336788888888753 666
Q ss_pred cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh--------------hcCCCccEEEc
Q 043910 95 LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI--------------LSAGNMEEMIL 160 (353)
Q Consensus 95 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------~~~~~L~~L~l 160 (353)
+....+....|+.+.+.... +.+. ..++..+..++......... ......+ .....+..+.+
T Consensus 174 I~~~aF~~~~l~~i~ip~~~--~~i~-~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 249 (394)
T 4gt6_A 174 IEERAFTGTALTQIHIPAKV--TRIG-TNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKI 249 (394)
T ss_dssp ECTTTTTTCCCSEEEECTTC--CEEC-TTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEEC
T ss_pred eccccccccceeEEEECCcc--cccc-cchhhhccccceeccccccc-ccccceeecccccccccccccccccccceEEc
Confidence 66666677788888876542 2222 23566667777665543211 1110000 01112222222
Q ss_pred cCccCccc-CccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCcc
Q 043910 161 NGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 161 ~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~ 237 (353)
.. .++.+ ..++..+.+|+.+.+.. . ...+. ..+..+.+|+.+.+.. .++.++. .+..+.+|+.+++..+ ++.
T Consensus 250 p~-~v~~i~~~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~ 324 (394)
T 4gt6_A 250 PN-GVARIETHAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQ 324 (394)
T ss_dssp CT-TEEEECTTTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred CC-cceEcccceeeecccccEEeccc-c-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccE
Confidence 11 11111 12345555666665543 1 22222 2445556666665542 3333332 3455566666666433 443
Q ss_pred cch-hHhhccCCceeccccccccccCCC----CCCCcceeecCC
Q 043910 238 IPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADH 276 (353)
Q Consensus 238 l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~ 276 (353)
+.. ++.+|.+|+.+.+.. .++.+.. .+.+|+.+++.+
T Consensus 325 I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 332 445566666665543 2344432 344555555544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=6.2e-07 Score=71.41 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=41.2
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhhcC----CCccEEEccCc-cCcc-cCccccCCC
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEILSA----GNMEEMILNGT-AIEE-LPSSIECLS 176 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~----~~L~~L~l~~~-~i~~-l~~~~~~l~ 176 (353)
+|+.|++++|. +++.. ...+..+++|++|++++|..+++.. ..+..+ ++|++|++++| .+++ --..+..++
T Consensus 62 ~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 44555555543 33221 2344555566666666665444321 112221 24555555555 3541 112344566
Q ss_pred CCCEEeccCCCCCcc
Q 043910 177 RLLHLGLRDCKRLKS 191 (353)
Q Consensus 177 ~L~~L~l~~~~~~~~ 191 (353)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 666666666665553
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.4e-07 Score=75.21 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=60.6
Q ss_pred hhcCCCccEEEccCc-cCcc-----cCccccCCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCCc----
Q 043910 149 ILSAGNMEEMILNGT-AIEE-----LPSSIECLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGITQ---- 214 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~-~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~~---- 214 (353)
+...+.|++|++++| .+.. +...+...++|++|++++|..-.. +...+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345566677777666 6552 233445556667777766543221 22233445566677777766652
Q ss_pred -cCcccCCCCCCcEEEe--eCCCCcc-----cchhHhhccCCceeccccc
Q 043910 215 -LPENLGQLFSLEEFCL--RKTKFEK-----IPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 215 -~~~~~~~l~~L~~L~l--~~~~l~~-----l~~~l~~l~~L~~L~l~~~ 256 (353)
+...+...++|++|++ ++|.+.. +...+...+.|++|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3444555566777777 6666651 3334455566777777665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=8.7e-07 Score=75.85 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=53.3
Q ss_pred cCCCCCCEEeccCCCCCc--ccCccccCCCCCCEEEeeCccCCccCcccCCCC--CCcEEEeeCCCCc-ccc-------h
Q 043910 173 ECLSRLLHLGLRDCKRLK--SLPKGLCKLKSLKFLILNGCGITQLPENLGQLF--SLEEFCLRKTKFE-KIP-------T 240 (353)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~--~L~~L~l~~~~l~-~l~-------~ 240 (353)
..+++|++|++++|...+ .+|..+..+++|+.|++++|.++.+.. +..+. +|++|++++|++. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456788888888754322 334455678888888888888775522 33333 8888888888886 343 2
Q ss_pred hHhhccCCceec
Q 043910 241 NVIHLSRLHSFC 252 (353)
Q Consensus 241 ~l~~l~~L~~L~ 252 (353)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356788888876
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.14 E-value=0.00021 Score=64.49 Aligned_cols=127 Identities=11% Similarity=0.151 Sum_probs=92.8
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKS 201 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~ 201 (353)
.+..+..|+.+.+.. .....-...+..+.+|+.+.+..+ ++.+.. ++..+.+|+.+.+.. .+..++. .|..+.+
T Consensus 212 ~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred ccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 455667788877765 222222345677889999998765 555543 567889999999865 3555553 6789999
Q ss_pred CCEEEeeCccCCccC-cccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccc
Q 043910 202 LKFLILNGCGITQLP-ENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSY 255 (353)
Q Consensus 202 L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~ 255 (353)
|+.+.+..+.++.++ ..+.++.+|+.+++..+ +..+.. ++.+|++|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 999999988888775 46788999999999654 666654 567888898887754
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=2.4e-05 Score=66.83 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=48.2
Q ss_pred cCCCccEEEccCccCccc---CccccCCCCCCEEeccCCCCCcccCccccCCC--CCCEEEeeCccCC-ccCc-------
Q 043910 151 SAGNMEEMILNGTAIEEL---PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLK--SLKFLILNGCGIT-QLPE------- 217 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~i~-~~~~------- 217 (353)
.+++|+.|+|++|.++.+ +..+..+++|++|+|++|. ++.+. .+..+. +|++|++.+|.+. .+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 467778888888777754 3445567788888887744 44332 223333 7888888888776 2331
Q ss_pred ccCCCCCCcEEE
Q 043910 218 NLGQLFSLEEFC 229 (353)
Q Consensus 218 ~~~~l~~L~~L~ 229 (353)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245667777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.58 E-value=0.0019 Score=52.24 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=16.8
Q ss_pred CCCCCEEEeeCccCC-----ccCcccCCCCCCcEEEeeCC
Q 043910 199 LKSLKFLILNGCGIT-----QLPENLGQLFSLEEFCLRKT 233 (353)
Q Consensus 199 l~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~ 233 (353)
-+.|+.|++++|.|. .+.+.+..-..|++|+++++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344555555555544 22333444445555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.30 E-value=0.0027 Score=51.28 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=53.9
Q ss_pred CccCcEEeecCCCCCcc-----cchhhhcCCCccEEEccCccCcc-----cCccccCCCCCCEEeccCCCCCcc----cC
Q 043910 128 LNKLTILNLSGCSQLKR-----LPAEILSAGNMEEMILNGTAIEE-----LPSSIECLSRLLHLGLRDCKRLKS----LP 193 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----l~ 193 (353)
-+.|++|++++++.+++ +...+..-+.|+.|+|++|.|.+ +...+..-+.|++|+|++|..-.. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 34555666655323322 22223344556666666666651 223344445666666666432221 22
Q ss_pred ccccCCCCCCEEEeeCcc---CC-----ccCcccCCCCCCcEEEeeCCCC
Q 043910 194 KGLCKLKSLKFLILNGCG---IT-----QLPENLGQLFSLEEFCLRKTKF 235 (353)
Q Consensus 194 ~~~~~l~~L~~L~l~~~~---i~-----~~~~~~~~l~~L~~L~l~~~~l 235 (353)
..+..-+.|+.|+++++. +. .+.+.+..-+.|+.|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234444557777776542 22 1233344456777777766654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.83 E-value=0.011 Score=44.43 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=38.6
Q ss_pred EEeccCCCCCc--ccCccccCCCCCCEEEeeCccCCccCcc-cCCCCCCcEEEeeCCCCc
Q 043910 180 HLGLRDCKRLK--SLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 180 ~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~ 236 (353)
.++-++ +.++ .+|..+ ..+|+.|++++|.|+.++.. +..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 566665 4555 677542 34688888888888877653 567788888888888874
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.087 Score=39.37 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=16.1
Q ss_pred CCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccC
Q 043910 177 RLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGI 212 (353)
Q Consensus 177 ~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i 212 (353)
+|++|+|++ +.++.+|. .|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 345555554 22333332 344455555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.79 E-value=34 Score=23.65 Aligned_cols=14 Identities=0% Similarity=0.093 Sum_probs=5.9
Q ss_pred cccCCccCcEEeec
Q 043910 124 FIRSLNKLTILNLS 137 (353)
Q Consensus 124 ~~~~l~~L~~L~l~ 137 (353)
+|.+|.+|+.+.+-
T Consensus 15 aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNTVIREITVQ 28 (100)
T ss_dssp TTTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC
Confidence 34444444444443
Done!