BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043911
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 6 GFRFQPSNEQIIC-LLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
GFRF P++E+++ L +K F I +ID + +PW L +K ++
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 76
Query: 65 XXXXXXXXESTRAHRRTNAGYWKVT 89
+R +R +GYWK T
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKAT 101
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 6 GFRFQPSNEQIIC-LLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
GFRF P++E+++ L +K F I +ID + +PW L +K ++
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 79
Query: 65 XXXXXXXXESTRAHRRTNAGYWKVT 89
+R +R +GYWK T
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKAT 104
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 6 GFRFQPSNEQII-CLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
GFRF P++++++ L +K R I ++D + +PWDL + + +
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLPERALFGAREWYFFTP 76
Query: 65 XXXXXXXXESTRAHRRTNAGYWKVT 89
+R +R GYWK T
Sbjct: 77 RDRKYP--NGSRPNRAAGNGYWKAT 99
>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
Length = 1323
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 4 LMGFRFQPSNEQIICLLEKKRLNPRFLHH 32
L+ F F+ E ++ LL+ +LN R LHH
Sbjct: 1218 LLDFSFRKHREDVLSLLQTLQLNTRLLHH 1246
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 2 ESLMGFRFQPSNEQIIC---LLEKKRLNPRFLHHTIKDIDDIC 41
+ L GFR Q S+ +I L K RLN HHT +D++ I
Sbjct: 127 QPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIV 169
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 15 QIICLLEKKRLNPRFLHHTIKDIDDI 40
+I+ ++ K NPRF H+T + I I
Sbjct: 601 EIVTIMAKNPSNPRFTHYTFESIGAI 626
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 15 QIICLLEKKRLNPRFLHHTIKDIDDI 40
+I+ ++ K NPRF H+T + I I
Sbjct: 601 EIVTIMAKNPSNPRFTHYTFESIGAI 626
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,345,159
Number of Sequences: 62578
Number of extensions: 67022
Number of successful extensions: 64
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 8
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)