Query 043911
Match_columns 89
No_of_seqs 106 out of 674
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 8.5E-41 2.9E-45 229.4 6.2 85 1-89 13-99 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-40 6.2E-45 227.2 6.0 85 1-89 15-101 (171)
3 1ldd_A APC2WHB, anaphase promo 64.4 2.1 7.2E-05 24.9 0.8 25 3-28 36-61 (74)
4 2ehh_A DHDPS, dihydrodipicolin 55.9 4 0.00014 28.8 1.2 18 3-21 102-119 (294)
5 2ojp_A DHDPS, dihydrodipicolin 55.3 4.1 0.00014 28.7 1.2 23 3-28 103-125 (292)
6 3cpr_A Dihydrodipicolinate syn 55.3 4.1 0.00014 28.9 1.2 18 3-21 118-135 (304)
7 1f6k_A N-acetylneuraminate lya 55.0 4.2 0.00014 28.6 1.2 18 3-21 106-123 (293)
8 2yxg_A DHDPS, dihydrodipicolin 54.0 4.4 0.00015 28.4 1.2 18 3-21 102-119 (289)
9 2rfg_A Dihydrodipicolinate syn 53.8 5 0.00017 28.4 1.4 18 3-21 102-119 (297)
10 2nuw_A 2-keto-3-deoxygluconate 53.5 5.4 0.00019 28.0 1.5 18 3-21 98-116 (288)
11 2vc6_A MOSA, dihydrodipicolina 53.4 4.6 0.00016 28.4 1.2 18 3-21 102-119 (292)
12 2wkj_A N-acetylneuraminate lya 53.1 4.7 0.00016 28.6 1.2 18 3-21 113-130 (303)
13 3b4u_A Dihydrodipicolinate syn 52.3 5.8 0.0002 28.0 1.5 18 3-21 105-123 (294)
14 1o5k_A DHDPS, dihydrodipicolin 51.8 5.1 0.00017 28.5 1.2 23 3-28 114-136 (306)
15 2v9d_A YAGE; dihydrodipicolini 51.1 5.3 0.00018 29.0 1.2 18 3-21 133-150 (343)
16 3si9_A DHDPS, dihydrodipicolin 51.0 5.3 0.00018 28.6 1.2 18 3-21 124-141 (315)
17 4dox_A Coat protein; all helix 50.6 7.8 0.00027 27.0 1.9 24 4-27 156-179 (226)
18 1xky_A Dihydrodipicolinate syn 50.6 5.4 0.00019 28.2 1.2 18 3-21 114-131 (301)
19 3daq_A DHDPS, dihydrodipicolin 50.6 5.5 0.00019 28.1 1.2 18 3-21 104-121 (292)
20 2r91_A 2-keto-3-deoxy-(6-phosp 50.5 6.3 0.00021 27.6 1.5 18 3-21 97-115 (286)
21 3d0c_A Dihydrodipicolinate syn 50.3 6.5 0.00022 28.0 1.5 18 3-21 113-130 (314)
22 1w3i_A EDA, 2-keto-3-deoxy glu 49.7 6 0.00021 27.8 1.3 18 3-21 98-116 (293)
23 3m5v_A DHDPS, dihydrodipicolin 49.4 5.8 0.0002 28.0 1.2 17 3-20 110-126 (301)
24 3h5d_A DHDPS, dihydrodipicolin 49.3 5.8 0.0002 28.3 1.2 17 3-20 110-126 (311)
25 3e96_A Dihydrodipicolinate syn 49.2 6.9 0.00024 27.9 1.5 18 3-21 113-130 (316)
26 3fkr_A L-2-keto-3-deoxyarabona 48.6 7 0.00024 27.8 1.5 19 3-21 110-130 (309)
27 2r8w_A AGR_C_1641P; APC7498, d 48.4 7.2 0.00025 28.1 1.5 18 3-21 136-153 (332)
28 3a5f_A Dihydrodipicolinate syn 48.3 4.4 0.00015 28.5 0.4 17 3-20 103-119 (291)
29 3na8_A Putative dihydrodipicol 48.0 7.4 0.00025 27.8 1.5 18 3-21 126-143 (315)
30 3l21_A DHDPS, dihydrodipicolin 47.8 6.4 0.00022 27.9 1.2 23 3-28 117-139 (304)
31 3flu_A DHDPS, dihydrodipicolin 47.6 6.5 0.00022 27.7 1.2 17 3-20 109-125 (297)
32 3tak_A DHDPS, dihydrodipicolin 47.2 6.6 0.00023 27.6 1.2 17 3-20 103-119 (291)
33 3qze_A DHDPS, dihydrodipicolin 46.5 6.9 0.00023 27.9 1.2 18 3-21 125-142 (314)
34 4hfk_B Putative uncharacterize 46.0 3.7 0.00013 25.5 -0.3 30 13-43 58-89 (105)
35 2pcq_A Putative dihydrodipicol 42.9 6 0.0002 27.7 0.3 18 3-21 95-113 (283)
36 4dpp_A DHDPS 2, dihydrodipicol 41.6 8.2 0.00028 28.4 0.9 17 3-20 161-177 (360)
37 4hff_B Putative periplasmic pr 39.9 4.9 0.00017 24.9 -0.4 30 13-43 60-91 (104)
38 2hmc_A AGR_L_411P, dihydrodipi 39.1 12 0.00041 27.1 1.5 18 3-21 125-143 (344)
39 3dz1_A Dihydrodipicolinate syn 36.6 13 0.00043 26.4 1.3 17 3-21 109-125 (313)
40 3dct_B Nuclear receptor coacti 36.2 17 0.00059 15.9 1.2 13 11-24 3-15 (21)
41 3g1g_A GAG polyprotein, capsid 32.5 26 0.00088 20.9 1.9 14 10-23 62-75 (87)
42 2jv2_A Putative uncharacterize 29.7 43 0.0015 19.4 2.6 27 13-42 26-54 (83)
43 4b6i_A SMA2266; signaling prot 28.7 17 0.00058 22.3 0.7 29 14-43 60-90 (102)
44 3nr5_A MAF1, repressor of RNA 26.8 27 0.00092 23.1 1.5 10 38-47 122-131 (164)
45 1ju5_A CRK; CRK, SH2, SH3, ada 26.1 58 0.002 19.1 2.8 18 9-26 82-99 (109)
46 2kk6_A Proto-oncogene tyrosine 25.8 73 0.0025 19.1 3.3 16 10-25 80-95 (116)
47 3czp_A Putative polyphosphate 25.2 23 0.0008 27.1 1.1 35 4-40 326-365 (500)
48 1cmb_A Met APO-repressor; DNA- 24.6 68 0.0023 19.4 2.9 39 10-52 50-88 (104)
49 3fyr_A Sporulation inhibitor S 24.4 58 0.002 17.2 2.2 18 11-28 6-23 (48)
50 3rhf_A Putative polyphosphate 24.4 25 0.00087 25.2 1.1 34 4-39 101-139 (289)
51 3eb2_A Putative dihydrodipicol 23.9 32 0.0011 24.2 1.5 16 4-20 107-122 (300)
52 3s5o_A 4-hydroxy-2-oxoglutarat 22.3 41 0.0014 23.7 1.8 19 3-21 116-135 (307)
53 4ds7_E Spindle POLE BODY compo 21.8 42 0.0014 18.3 1.4 16 13-29 35-50 (55)
54 3h0d_A CTSR; protein DNA compl 20.8 45 0.0016 21.8 1.7 34 14-49 4-42 (155)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=8.5e-41 Score=229.40 Aligned_cols=85 Identities=27% Similarity=0.568 Sum_probs=75.2
Q ss_pred CCCCCCceecCChHHHHHHHHHhhhCCCCCCCCcceE--eeCCCCCCCchhhhccCCCCCceEEEEeccccccCCCCccc
Q 043911 1 MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDI--DDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAH 78 (89)
Q Consensus 1 m~lp~GfrF~PTDeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~ 78 (89)
+.|||||||+|||||||.|||++|+.|. +++.++| +|||++|||+||+.+.. ++++|||||++.+|+++|.|++
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~--~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQ--RLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTC--CCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCC--CCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 3699999999999999999999999999 8898888 99999999999998764 6789999999999999999999
Q ss_pred ccCCCceeecC
Q 043911 79 RRTNAGYWKVT 89 (89)
Q Consensus 79 R~~~~G~Wk~t 89 (89)
|+|++||||+|
T Consensus 89 R~t~~G~Wkat 99 (174)
T 3ulx_A 89 RAAGNGYWKAT 99 (174)
T ss_dssp EEETTEEEEEC
T ss_pred eecCCceEccC
Confidence 99999999987
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-40 Score=227.18 Aligned_cols=85 Identities=27% Similarity=0.557 Sum_probs=73.0
Q ss_pred CCCCCCceecCChHHHHHHHHHhhhCCCCCCCCcceE--eeCCCCCCCchhhhccCCCCCceEEEEeccccccCCCCccc
Q 043911 1 MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDI--DDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAH 78 (89)
Q Consensus 1 m~lp~GfrF~PTDeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~ 78 (89)
+.|||||||+|||||||.|||++|+.|. +++.++| +|||++|||+||+.+.. ++++|||||++.+|+++|.|++
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~--~~~~~~I~e~Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTC--CCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CC
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCC--CCCCCeEeecccccCChhHhhchhhc--CCccEEEEeccccccCCCCccc
Confidence 3689999999999999999999999999 8888888 99999999999998754 6889999999999999999999
Q ss_pred ccCCCceeecC
Q 043911 79 RRTNAGYWKVT 89 (89)
Q Consensus 79 R~~~~G~Wk~t 89 (89)
|+|++||||+|
T Consensus 91 R~t~~G~Wk~t 101 (171)
T 1ut7_A 91 RVAGSGYWKAT 101 (171)
T ss_dssp EEETTEEEEEE
T ss_pred ccCCCCEEecc
Confidence 99999999986
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=64.42 E-value=2.1 Score=24.93 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=21.6
Q ss_pred CCCCceecC-ChHHHHHHHHHhhhCCC
Q 043911 3 SLMGFRFQP-SNEQIICLLEKKRLNPR 28 (89)
Q Consensus 3 lp~GfrF~P-TDeELi~~YL~~Ki~g~ 28 (89)
.|.|+.|.. |++||-. ||..++..+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~ 61 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEG 61 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCC
Confidence 367899998 9999977 899999987
No 4
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=55.88 E-value=4 Score=28.77 Aligned_cols=18 Identities=6% Similarity=0.141 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| +.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 7899999999874
No 5
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=55.35 E-value=4.1 Score=28.67 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=16.0
Q ss_pred CCCCceecCChHHHHHHHHHhhhCCC
Q 043911 3 SLMGFRFQPSNEQIICLLEKKRLNPR 28 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL~~Ki~g~ 28 (89)
+||-| +.||+++|+.||- .|+..
T Consensus 103 ~~P~y-~~~s~~~l~~~f~--~ia~a 125 (292)
T 2ojp_A 103 VTPYY-NRPSQEGLYQHFK--AIAEH 125 (292)
T ss_dssp ECCCS-SCCCHHHHHHHHH--HHHTT
T ss_pred CCCCC-CCCCHHHHHHHHH--HHHHh
Confidence 45644 7899999999873 34443
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=55.29 E-value=4.1 Score=28.92 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.2
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+|| |.+.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 448899999999873
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=54.95 E-value=4.2 Score=28.63 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| |.||+++|+.||-
T Consensus 106 ~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 8899999999874
No 8
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=54.04 E-value=4.4 Score=28.45 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=14.0
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| +.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITPYY-NKPTQEGLRKHFG 119 (289)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 7899999999873
No 9
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=53.80 E-value=5 Score=28.37 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| |.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 102 VAGYY-NRPSQEGLYQHFK 119 (297)
T ss_dssp CCCTT-TCCCHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHH
Confidence 46644 7899999999873
No 10
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=53.48 E-value=5.4 Score=28.03 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=14.0
Q ss_pred CCCCceec-CChHHHHHHHH
Q 043911 3 SLMGFRFQ-PSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~-PTDeELi~~YL 21 (89)
+||-| |. ||+++|+.||-
T Consensus 98 ~~P~y-~~~~s~~~l~~~f~ 116 (288)
T 2nuw_A 98 HSPYY-FPRLPEKFLAKYYE 116 (288)
T ss_dssp CCCCS-SCSCCHHHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHH
Confidence 46644 77 99999999874
No 11
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=53.37 E-value=4.6 Score=28.40 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||- .+.||++||+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 102 VSPY-YNKPTQEGIYQHFK 119 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999874
No 12
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=53.09 E-value=4.7 Score=28.60 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||.| |.||+++|+.||-
T Consensus 113 ~~P~y-~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 113 VTPFY-YPFSFEEHCDHYR 130 (303)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHH
Confidence 45644 8899999999874
No 13
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=52.35 E-value=5.8 Score=27.96 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=13.9
Q ss_pred CCCCceec-CChHHHHHHHH
Q 043911 3 SLMGFRFQ-PSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~-PTDeELi~~YL 21 (89)
+||-| |. ||+++|+.||-
T Consensus 105 ~~P~y-~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 105 APPSY-FKNVSDDGLFAWFS 123 (294)
T ss_dssp CCCCS-SCSCCHHHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHH
Confidence 45544 77 99999999874
No 14
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=51.82 E-value=5.1 Score=28.47 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=16.1
Q ss_pred CCCCceecCChHHHHHHHHHhhhCCC
Q 043911 3 SLMGFRFQPSNEQIICLLEKKRLNPR 28 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL~~Ki~g~ 28 (89)
+||-| +.||+++|+.||- .|+..
T Consensus 114 ~~P~y-~~~s~~~l~~~f~--~va~a 136 (306)
T 1o5k_A 114 VTPYY-NKPTQEGLYQHYK--YISER 136 (306)
T ss_dssp ECCCS-SCCCHHHHHHHHH--HHHTT
T ss_pred CCCCC-CCCCHHHHHHHHH--HHHHh
Confidence 46644 7899999999873 34443
No 15
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=51.08 E-value=5.3 Score=28.97 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| |.||+++|+.||-
T Consensus 133 ~~P~Y-~~~s~~~l~~~f~ 150 (343)
T 2v9d_A 133 INPYY-WKVSEANLIRYFE 150 (343)
T ss_dssp ECCSS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 8899999999874
No 16
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=51.01 E-value=5.3 Score=28.60 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=13.9
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| |.||+++|+.||-
T Consensus 124 ~~P~y-~~~~~~~l~~~f~ 141 (315)
T 3si9_A 124 VTPYY-NRPNQRGLYTHFS 141 (315)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 7899999999873
No 17
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=50.63 E-value=7.8 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.4
Q ss_pred CCCceecCChHHHHHHHHHhhhCC
Q 043911 4 LMGFRFQPSNEQIICLLEKKRLNP 27 (89)
Q Consensus 4 p~GfrF~PTDeELi~~YL~~Ki~g 27 (89)
+-|..+.||++|+|.+=..+++.-
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~iaL 179 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQVHL 179 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC-----
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Confidence 348999999999999866665543
No 18
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=50.57 E-value=5.4 Score=28.24 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=14.0
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||- .+.||+++|+.||-
T Consensus 114 ~~P~-y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 114 VAPY-YNKPSQEGMYQHFK 131 (301)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4664 47899999999873
No 19
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=50.56 E-value=5.5 Score=28.07 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=13.7
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+|| |.|.||+++|+.||-
T Consensus 104 ~~P-~y~~~~~~~l~~~f~ 121 (292)
T 3daq_A 104 ITP-YYNKTNQRGLVKHFE 121 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 447899999999873
No 20
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=50.53 E-value=6.3 Score=27.62 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=14.0
Q ss_pred CCCCceec-CChHHHHHHHH
Q 043911 3 SLMGFRFQ-PSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~-PTDeELi~~YL 21 (89)
+||-| |. ||+++|+.||-
T Consensus 97 ~~P~y-~~~~s~~~l~~~f~ 115 (286)
T 2r91_A 97 LPPYY-FPRLSERQIAKYFR 115 (286)
T ss_dssp CCSCS-STTCCHHHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHH
Confidence 46644 78 99999999874
No 21
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=50.28 E-value=6.5 Score=28.04 Aligned_cols=18 Identities=0% Similarity=-0.230 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 113 HQPV-HPYITDAGAVEYYR 130 (314)
T ss_dssp CCCC-CSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999873
No 22
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=49.69 E-value=6 Score=27.84 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=13.8
Q ss_pred CCCCceec-CChHHHHHHHH
Q 043911 3 SLMGFRFQ-PSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~-PTDeELi~~YL 21 (89)
+||-| |. ||+++|+.||-
T Consensus 98 ~~P~y-~~~~s~~~l~~~f~ 116 (293)
T 1w3i_A 98 YAPYY-YPRMSEKHLVKYFK 116 (293)
T ss_dssp ECCCS-CSSCCHHHHHHHHH
T ss_pred cCCCC-CCCCCHHHHHHHHH
Confidence 45644 77 99999999873
No 23
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=49.42 E-value=5.8 Score=28.04 Aligned_cols=17 Identities=6% Similarity=0.096 Sum_probs=13.2
Q ss_pred CCCCceecCChHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLL 20 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~Y 20 (89)
+|| |.|.||+++|+.||
T Consensus 110 ~~P-~y~~~s~~~l~~~f 126 (301)
T 3m5v_A 110 VAP-YYNKPTQQGLYEHY 126 (301)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHH
Confidence 345 44789999999987
No 24
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=49.31 E-value=5.8 Score=28.28 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=13.2
Q ss_pred CCCCceecCChHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLL 20 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~Y 20 (89)
+||- .|.||+++|+.||
T Consensus 110 ~~P~-y~~~s~~~l~~~f 126 (311)
T 3h5d_A 110 IVPY-YNKPSQEGMYQHF 126 (311)
T ss_dssp ECCC-SSCCCHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHH
Confidence 3554 4789999999976
No 25
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=49.23 E-value=6.9 Score=27.89 Aligned_cols=18 Identities=0% Similarity=-0.127 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| +.||+++|+.||-
T Consensus 113 ~~P~y-~~~s~~~l~~~f~ 130 (316)
T 3e96_A 113 HMPIH-PYVTAGGVYAYFR 130 (316)
T ss_dssp CCCCC-SCCCHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHH
Confidence 46655 8899999999863
No 26
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=48.63 E-value=7 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=14.5
Q ss_pred CCCCce--ecCChHHHHHHHH
Q 043911 3 SLMGFR--FQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~Gfr--F~PTDeELi~~YL 21 (89)
+||-|- |.||+++|+.||-
T Consensus 110 ~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 110 MPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp CCSCBTTTBCCCHHHHHHHHH
T ss_pred cCCCCccCCCCCHHHHHHHHH
Confidence 466442 8999999999864
No 27
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=48.43 E-value=7.2 Score=28.10 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=14.1
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||-| +.||+++|+.||-
T Consensus 136 ~~P~Y-~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 136 APVSY-TPLTQEEAYHHFA 153 (332)
T ss_dssp CCCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 46644 7899999999873
No 28
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=48.33 E-value=4.4 Score=28.49 Aligned_cols=17 Identities=0% Similarity=-0.003 Sum_probs=13.4
Q ss_pred CCCCceecCChHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLL 20 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~Y 20 (89)
+||-| +.||++||+.||
T Consensus 103 ~~P~y-~~~s~~~l~~~f 119 (291)
T 3a5f_A 103 ITPYY-NKTTQKGLVKHF 119 (291)
T ss_dssp ECCCS-SCCCHHHHHHHC
T ss_pred cCCCC-CCCCHHHHHHHH
Confidence 45644 789999999986
No 29
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=48.03 E-value=7.4 Score=27.79 Aligned_cols=18 Identities=0% Similarity=0.062 Sum_probs=13.5
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||- .|.||+++|+.||-
T Consensus 126 ~~P~-y~~~s~~~l~~~f~ 143 (315)
T 3na8_A 126 LPIS-YWKLNEAEVFQHYR 143 (315)
T ss_dssp CCCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 47899999999763
No 30
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=47.80 E-value=6.4 Score=27.95 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=15.7
Q ss_pred CCCCceecCChHHHHHHHHHhhhCCC
Q 043911 3 SLMGFRFQPSNEQIICLLEKKRLNPR 28 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL~~Ki~g~ 28 (89)
+|| |.|.||+++|+.|| ..|+..
T Consensus 117 ~~P-~y~~~s~~~l~~~f--~~va~a 139 (304)
T 3l21_A 117 VTP-YYSKPPQRGLQAHF--TAVADA 139 (304)
T ss_dssp ECC-CSSCCCHHHHHHHH--HHHHTS
T ss_pred CCC-CCCCCCHHHHHHHH--HHHHHh
Confidence 345 44789999999976 334444
No 31
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=47.55 E-value=6.5 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.3
Q ss_pred CCCCceecCChHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLL 20 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~Y 20 (89)
+|| |.|.||+++|+.||
T Consensus 109 ~~P-~y~~~~~~~l~~~f 125 (297)
T 3flu_A 109 VVP-YYNKPSQEGIYQHF 125 (297)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 355 44789999999987
No 32
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=47.19 E-value=6.6 Score=27.57 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.2
Q ss_pred CCCCceecCChHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLL 20 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~Y 20 (89)
+|| |.|.||+++|+.||
T Consensus 103 ~~P-~y~~~~~~~l~~~f 119 (291)
T 3tak_A 103 VTP-YYNKPTQEGLYQHY 119 (291)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHH
Confidence 355 44689999999976
No 33
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=46.50 E-value=6.9 Score=27.95 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=13.6
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||- .|.||+++|+.||-
T Consensus 125 ~~P~-y~~~s~~~l~~~f~ 142 (314)
T 3qze_A 125 VTPY-YNKPTQEGMYQHFR 142 (314)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 3554 47899999999764
No 34
>4hfk_B Putative uncharacterized protein; amidase, hydrolase; 2.10A {Enterobacter cloacae}
Probab=45.96 E-value=3.7 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhhCCCCCCCCcceE--eeCCCC
Q 043911 13 NEQIICLLEKKRLNPRFLHHTIKDI--DDICSL 43 (89)
Q Consensus 13 DeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~ 43 (89)
-.|||..||.++..|.. +.+.++. .|+|..
T Consensus 58 ~~~Li~kyLa~~y~~~~-~~~f~llKClDlyHS 89 (105)
T 4hfk_B 58 ADEVIVSLLKQKVGGTE-PGHYQILKCTLIANS 89 (105)
T ss_dssp HHHHHHHHHTSCCBCSS-SSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHccccCCCC-CCcchHHHHHHHhcc
Confidence 46899999999888652 3333444 888754
No 35
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=42.90 E-value=6 Score=27.74 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=14.0
Q ss_pred CCCCceecC-ChHHHHHHHH
Q 043911 3 SLMGFRFQP-SNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~P-TDeELi~~YL 21 (89)
+||-| +.| |+++|+.||-
T Consensus 95 ~~P~y-~~~~~~~~l~~~f~ 113 (283)
T 2pcq_A 95 TPPRY-YHGSLGAGLLRYYE 113 (283)
T ss_dssp CCCCT-TGGGTTTHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHH
Confidence 46644 789 9999999873
No 36
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=41.58 E-value=8.2 Score=28.44 Aligned_cols=17 Identities=18% Similarity=0.039 Sum_probs=14.0
Q ss_pred CCCCceecCChHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLL 20 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~Y 20 (89)
+|| |.+.||+++|+.||
T Consensus 161 v~P-yY~k~sq~gl~~hf 177 (360)
T 4dpp_A 161 INP-YYGKTSIEGLIAHF 177 (360)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHH
Confidence 466 55889999999987
No 37
>4hff_B Putative periplasmic protein; amidase, hydrolase; 2.40A {Salmonella typhimurium}
Probab=39.90 E-value=4.9 Score=24.91 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhhhCCCCCCCCcceE--eeCCCC
Q 043911 13 NEQIICLLEKKRLNPRFLHHTIKDI--DDICSL 43 (89)
Q Consensus 13 DeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~ 43 (89)
-.+||..||.++..+.. +...++. .|+|..
T Consensus 60 ~~~Li~~yL~~~y~~~~-~~~f~~lKClDlyHS 91 (104)
T 4hff_B 60 IDEIAKKYSGLKYNGSI-SSDFNTMKCIDFIHD 91 (104)
T ss_dssp HHHHHHHHHTCCCCCSS-SCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHcccccCcC-CCcchhhhHHHHhcC
Confidence 46899999999998763 2233334 777754
No 38
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=39.13 E-value=12 Score=27.13 Aligned_cols=18 Identities=0% Similarity=-0.337 Sum_probs=13.6
Q ss_pred CCCCceec-CChHHHHHHHH
Q 043911 3 SLMGFRFQ-PSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~-PTDeELi~~YL 21 (89)
+||- .+. ||+++|+.||-
T Consensus 125 ~~P~-y~~~~s~~~l~~~f~ 143 (344)
T 2hmc_A 125 IPRV-LSRGSVIAAQKAHFK 143 (344)
T ss_dssp CCCC-SSSTTCHHHHHHHHH
T ss_pred CCCc-cCCCCCHHHHHHHHH
Confidence 4554 477 89999999764
No 39
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=36.62 E-value=13 Score=26.44 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=13.2
Q ss_pred CCCCceecCChHHHHHHHH
Q 043911 3 SLMGFRFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~GfrF~PTDeELi~~YL 21 (89)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5664 5599999999764
No 40
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=36.17 E-value=17 Score=15.95 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=9.1
Q ss_pred CChHHHHHHHHHhh
Q 043911 11 PSNEQIICLLEKKR 24 (89)
Q Consensus 11 PTDeELi~~YL~~K 24 (89)
+.|.+|+. ||..|
T Consensus 3 ~kdhqllr-ylldk 15 (21)
T 3dct_B 3 SKDHQLLR-YLLDK 15 (26)
T ss_pred hhHHHHHH-HHHcc
Confidence 56888988 56544
No 41
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=32.46 E-value=26 Score=20.94 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=10.4
Q ss_pred cCChHHHHHHHHHh
Q 043911 10 QPSNEQIICLLEKK 23 (89)
Q Consensus 10 ~PTDeELi~~YL~~ 23 (89)
-|+.+|||.|-|.+
T Consensus 62 ~~~~~e~Ik~~l~~ 75 (87)
T 3g1g_A 62 LTTPGEIIKYVLDR 75 (87)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHH
Confidence 37789999966554
No 42
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=29.67 E-value=43 Score=19.43 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCC-cceE-eeCCC
Q 043911 13 NEQIICLLEKKRLNPRFLHHT-IKDI-DDICS 42 (89)
Q Consensus 13 DeELi~~YL~~Ki~g~~~~~~-~~~I-~Dvy~ 42 (89)
+.++ ..||++++.|+ |+. .+.| +++++
T Consensus 26 ~~~~-~~~lk~~L~gr--PV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDF-VDVIRIKLQGK--TVRTGDVIGISILG 54 (83)
T ss_dssp CHHH-HHHHHHHHTTS--EECTTCEEEEEETT
T ss_pred CccH-HHHHHHHHCCC--CccCCCEEEEeeCC
Confidence 3555 45999999999 754 4566 77655
No 43
>4b6i_A SMA2266; signaling protein; 1.95A {Serratia marcescens}
Probab=28.71 E-value=17 Score=22.32 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhCCCCCCCCcceE--eeCCCC
Q 043911 14 EQIICLLEKKRLNPRFLHHTIKDI--DDICSL 43 (89)
Q Consensus 14 eELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~ 43 (89)
.+||..||.++..+.. ..+.++. .|+|..
T Consensus 60 ~~Li~kyl~~~y~~~~-g~~~~llKCldlyHS 90 (102)
T 4b6i_A 60 EKLAEQYANKNSQGSV-QGTYHTLDCLSLQNA 90 (102)
T ss_dssp HHHHHHHHTTCCCCSS-SSCCHHHHHHGGGTC
T ss_pred HHHHHHHHHhccCCCC-CchhHHHHHHHhhch
Confidence 5899999999988872 2222333 888753
No 44
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=26.82 E-value=27 Score=23.09 Aligned_cols=10 Identities=40% Similarity=0.219 Sum_probs=8.9
Q ss_pred eeCCCCCCCc
Q 043911 38 DDICSLEPWD 47 (89)
Q Consensus 38 ~Dvy~~~Pw~ 47 (89)
+|||+++|..
T Consensus 122 C~IYsY~Pd~ 131 (164)
T 3nr5_A 122 CDIYSYNPDL 131 (164)
T ss_dssp CEEEEECCCG
T ss_pred CeEEEEcCCC
Confidence 9999999983
No 45
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=26.11 E-value=58 Score=19.06 Aligned_cols=18 Identities=11% Similarity=0.002 Sum_probs=14.5
Q ss_pred ecCChHHHHHHHHHhhhC
Q 043911 9 FQPSNEQIICLLEKKRLN 26 (89)
Q Consensus 9 F~PTDeELi~~YL~~Ki~ 26 (89)
-.+|=.|||.||-...+.
T Consensus 82 ~F~sl~~LV~~y~~~~l~ 99 (109)
T 1ju5_A 82 EFDSLPALLEFYKIHYLD 99 (109)
T ss_dssp EESSHHHHHHHHHHSCSS
T ss_pred ccCCHHHHHHHHhhCCCC
Confidence 368999999999876554
No 46
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.81 E-value=73 Score=19.08 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=13.0
Q ss_pred cCChHHHHHHHHHhhh
Q 043911 10 QPSNEQIICLLEKKRL 25 (89)
Q Consensus 10 ~PTDeELi~~YL~~Ki 25 (89)
.+|=.|||.+|-..+.
T Consensus 80 F~sl~eLV~~y~~~~~ 95 (116)
T 2kk6_A 80 FSNIPQLIDHHYTTKQ 95 (116)
T ss_dssp ESCHHHHHHHHHHTTC
T ss_pred eCCHHHHHHHHhhCCC
Confidence 4799999999987654
No 47
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=25.19 E-value=23 Score=27.07 Aligned_cols=35 Identities=9% Similarity=-0.112 Sum_probs=25.5
Q ss_pred CCCcee----cCChHHHHHHHHHhhhCCCCCCCCcceE-eeC
Q 043911 4 LMGFRF----QPSNEQIICLLEKKRLNPRFLHHTIKDI-DDI 40 (89)
Q Consensus 4 p~GfrF----~PTDeELi~~YL~~Ki~g~~~~~~~~~I-~Dv 40 (89)
|-|++- .||++|+...||.+.+... |-...++ .|=
T Consensus 326 prg~~V~~~~~Pt~~E~~~~yl~R~~~~l--P~~G~i~IfDR 365 (500)
T 3czp_A 326 PRQYHIVPIAAPTEEERAQPYLWRFWRHI--PARRQFTIFDR 365 (500)
T ss_dssp GGGCEEEECCSCCHHHHTSCTTHHHHTTC--CCTTCEEEEES
T ss_pred ccCCeEEEeCCCChhhhcchHHHHHHHhC--CCCCeEEEEeC
Confidence 446664 5999999999999988866 5444454 664
No 48
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=24.61 E-value=68 Score=19.35 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=28.8
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCCcceEeeCCCCCCCchhhhc
Q 043911 10 QPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGAS 52 (89)
Q Consensus 10 ~PTDeELi~~YL~~Ki~g~~~~~~~~~I~Dvy~~~Pw~L~~~~ 52 (89)
|-|.-||++.-...-..|+ |+|.+ .|+-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQ--PLP~D--~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQ--PLPDD--ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCC--CCCCG--GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCC--CCCCc--hhhhhcCCccchHHH
Confidence 4577888887666777888 88865 477777888887653
No 49
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=24.36 E-value=58 Score=17.23 Aligned_cols=18 Identities=22% Similarity=-0.064 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHhhhCCC
Q 043911 11 PSNEQIICLLEKKRLNPR 28 (89)
Q Consensus 11 PTDeELi~~YL~~Ki~g~ 28 (89)
=||+.||..|.+-+-.+-
T Consensus 6 LSDe~LiesY~~A~el~L 23 (48)
T 3fyr_A 6 LSDELLIESYFKATEMNL 23 (48)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred hcHHHHHHHHHHHHHhCC
Confidence 489999999988877755
No 50
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=24.36 E-value=25 Score=25.20 Aligned_cols=34 Identities=12% Similarity=-0.080 Sum_probs=24.0
Q ss_pred CCCcee----cCChHHHHHHHHHhhhCCCCCCCCcceE-ee
Q 043911 4 LMGFRF----QPSNEQIICLLEKKRLNPRFLHHTIKDI-DD 39 (89)
Q Consensus 4 p~GfrF----~PTDeELi~~YL~~Ki~g~~~~~~~~~I-~D 39 (89)
|-|++. .|||+|+...||.+-+... |-...|. .|
T Consensus 101 PRg~~V~a~~~Pt~eE~~~~ylwR~~~~l--P~~G~I~IFd 139 (289)
T 3rhf_A 101 PQGVQLTAFKAPTDEEKSHDFLWRIEKQV--PAAGMVGVFD 139 (289)
T ss_dssp GGGEEEEECCSCCHHHHTSCTTHHHHTTC--CCTTCEEEEE
T ss_pred cCceEEEECCCCChhhhcCCHHHHHHHhC--CCCCeEEEEe
Confidence 446664 5999999999999988755 5444443 44
No 51
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.89 E-value=32 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=12.4
Q ss_pred CCCceecCChHHHHHHH
Q 043911 4 LMGFRFQPSNEQIICLL 20 (89)
Q Consensus 4 p~GfrF~PTDeELi~~Y 20 (89)
||- .|.||+++|+.||
T Consensus 107 ~P~-y~~~~~~~l~~~f 122 (300)
T 3eb2_A 107 LEA-YFPLKDAQIESYF 122 (300)
T ss_dssp ECC-SSCCCHHHHHHHH
T ss_pred CCC-CCCCCHHHHHHHH
Confidence 443 4679999999976
No 52
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=22.25 E-value=41 Score=23.65 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=13.3
Q ss_pred CCCCc-eecCChHHHHHHHH
Q 043911 3 SLMGF-RFQPSNEQIICLLE 21 (89)
Q Consensus 3 lp~Gf-rF~PTDeELi~~YL 21 (89)
+||-| +..||+++|+.||-
T Consensus 116 ~~P~y~~~~~s~~~l~~~f~ 135 (307)
T 3s5o_A 116 VTPCYYRGRMSSAALIHHYT 135 (307)
T ss_dssp ECCCTTGGGCCHHHHHHHHH
T ss_pred cCCCcCCCCCCHHHHHHHHH
Confidence 35544 33589999999874
No 53
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=21.83 E-value=42 Score=18.26 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=8.6
Q ss_pred hHHHHHHHHHhhhCCCC
Q 043911 13 NEQIICLLEKKRLNPRF 29 (89)
Q Consensus 13 DeELi~~YL~~Ki~g~~ 29 (89)
|+.=|. ||.+||...+
T Consensus 35 d~qRi~-YLqrKia~~~ 50 (55)
T 4ds7_E 35 DDNRLR-ILRDRIESSS 50 (55)
T ss_dssp HHHHHH-HHHHC----C
T ss_pred hHHHHH-HHHHHHhccc
Confidence 555556 8999998773
No 54
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=20.78 E-value=45 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhCCCCCCCCcceE-----eeCCCCCCCchh
Q 043911 14 EQIICLLEKKRLNPRFLHHTIKDI-----DDICSLEPWDLA 49 (89)
Q Consensus 14 eELi~~YL~~Ki~g~~~~~~~~~I-----~Dvy~~~Pw~L~ 49 (89)
-++|..||+..+... +-..--| +|-++|-|.++-
T Consensus 4 SD~IE~yik~lL~~s--~~~~ieI~R~eLA~~F~CvPSQIN 42 (155)
T 3h0d_A 4 SDIIEQYLKQVLNMS--DQDIVEIKRSEIANKFRCVPSQIN 42 (155)
T ss_dssp HHHHHHHHHHHHTTS--SSSEEEECHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEeHHHHHHhcCCChhhce
Confidence 478999998887744 2111113 889999999985
Done!