Query 043912
Match_columns 255
No_of_seqs 139 out of 1496
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 1.7E-40 3.7E-45 300.4 26.0 244 5-249 6-260 (334)
2 KOG2766 Predicted membrane pro 100.0 1.4E-34 3.1E-39 247.2 0.5 240 6-248 12-255 (336)
3 PRK11272 putative DMT superfam 99.9 5.7E-20 1.2E-24 164.4 29.2 223 6-236 2-228 (292)
4 PRK11689 aromatic amino acid e 99.9 8.5E-20 1.8E-24 163.6 25.0 222 17-248 8-241 (295)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 1.6E-19 3.5E-24 157.8 25.2 175 25-206 1-179 (260)
6 PLN00411 nodulin MtN21 family 99.9 5.6E-19 1.2E-23 162.4 28.5 200 5-209 9-242 (358)
7 TIGR00817 tpt Tpt phosphate/ph 99.8 7.2E-19 1.6E-23 157.8 23.5 172 33-209 22-199 (302)
8 PRK11453 O-acetylserine/cystei 99.8 3.6E-18 7.7E-23 153.3 26.8 215 18-239 9-233 (299)
9 TIGR00688 rarD rarD protein. T 99.8 3.7E-17 8.1E-22 143.3 26.8 154 17-181 6-170 (256)
10 PTZ00343 triose or hexose phos 99.8 1.7E-15 3.6E-20 139.2 28.2 168 37-209 73-253 (350)
11 PRK10532 threonine and homoser 99.7 1.6E-15 3.5E-20 135.8 26.5 229 5-247 5-234 (293)
12 PRK15430 putative chlorampheni 99.7 3.7E-15 8.1E-20 133.6 27.4 160 10-181 6-173 (296)
13 TIGR03340 phn_DUF6 phosphonate 99.7 5.4E-15 1.2E-19 131.6 23.2 163 15-185 4-172 (281)
14 KOG3912 Predicted integral mem 99.7 9.2E-16 2E-20 133.6 17.4 226 25-251 15-291 (372)
15 KOG2765 Predicted membrane pro 99.7 2.1E-15 4.5E-20 135.9 16.3 140 75-215 162-309 (416)
16 COG0697 RhaT Permeases of the 99.6 3.9E-13 8.5E-18 117.9 28.2 166 23-194 17-191 (292)
17 PF04142 Nuc_sug_transp: Nucle 99.4 1.7E-11 3.6E-16 107.4 20.2 178 69-251 14-210 (244)
18 PF08449 UAA: UAA transporter 99.4 9.7E-11 2.1E-15 105.5 25.0 173 33-206 21-205 (303)
19 TIGR00776 RhaT RhaT L-rhamnose 99.3 9.8E-10 2.1E-14 98.5 21.2 170 17-193 5-186 (290)
20 PF13536 EmrE: Multidrug resis 99.2 2.5E-10 5.5E-15 88.2 12.6 95 47-142 2-104 (113)
21 PF00892 EamA: EamA-like trans 99.2 2.9E-10 6.4E-15 87.5 10.8 117 24-142 2-124 (126)
22 KOG4510 Permease of the drug/m 99.1 2E-11 4.4E-16 106.0 -0.7 179 20-204 45-238 (346)
23 COG2510 Predicted membrane pro 99.0 4.6E-09 1E-13 81.9 10.0 126 16-142 6-137 (140)
24 TIGR00950 2A78 Carboxylate/Ami 98.9 4.3E-08 9.2E-13 85.5 15.9 130 10-139 126-259 (260)
25 KOG4314 Predicted carbohydrate 98.9 1.6E-08 3.4E-13 84.8 10.9 132 79-213 60-194 (290)
26 COG2962 RarD Predicted permeas 98.9 1.4E-06 3.1E-11 77.0 22.0 183 12-209 7-198 (293)
27 KOG1441 Glucose-6-phosphate/ph 98.8 7.5E-08 1.6E-12 87.0 12.4 207 38-251 44-264 (316)
28 KOG2234 Predicted UDP-galactos 98.7 2.8E-05 6E-10 70.6 25.9 176 71-251 91-279 (345)
29 PRK10532 threonine and homoser 98.6 2.2E-06 4.8E-11 76.7 16.5 130 11-143 147-280 (293)
30 COG5006 rhtA Threonine/homoser 98.6 2.9E-05 6.3E-10 67.6 21.3 197 40-247 38-235 (292)
31 PRK11272 putative DMT superfam 98.6 4E-06 8.6E-11 75.0 16.2 128 12-142 150-283 (292)
32 PLN00411 nodulin MtN21 family 98.5 8.8E-06 1.9E-10 75.2 16.7 132 11-143 188-327 (358)
33 PRK11689 aromatic amino acid e 98.4 1.1E-05 2.5E-10 72.2 15.8 125 13-142 157-285 (295)
34 PRK11453 O-acetylserine/cystei 98.3 4.7E-05 1E-09 68.3 17.7 131 11-142 142-285 (299)
35 PRK15051 4-amino-4-deoxy-L-ara 98.3 6.2E-06 1.3E-10 63.7 10.0 64 79-142 43-107 (111)
36 PF03151 TPT: Triose-phosphate 98.3 6.3E-05 1.4E-09 60.3 16.3 127 15-141 3-150 (153)
37 TIGR03340 phn_DUF6 phosphonate 98.3 8.6E-06 1.9E-10 72.4 11.6 69 74-142 212-281 (281)
38 PRK15430 putative chlorampheni 98.2 4.8E-05 1.1E-09 68.2 15.2 68 75-142 216-283 (296)
39 TIGR00776 RhaT RhaT L-rhamnose 98.2 3.9E-05 8.5E-10 68.8 14.2 129 10-142 150-286 (290)
40 TIGR00817 tpt Tpt phosphate/ph 98.2 3.5E-05 7.5E-10 69.1 13.9 131 12-142 145-291 (302)
41 COG0697 RhaT Permeases of the 98.2 0.00016 3.5E-09 63.1 17.3 129 11-142 153-285 (292)
42 PTZ00343 triose or hexose phos 98.0 0.00049 1.1E-08 63.3 17.2 132 11-142 193-346 (350)
43 PF06800 Sugar_transport: Suga 97.9 0.0057 1.2E-07 54.3 20.8 133 70-206 43-184 (269)
44 KOG1581 UDP-galactose transpor 97.7 0.0037 8.1E-08 55.9 17.3 164 38-202 47-219 (327)
45 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.00043 9.4E-09 54.8 9.5 68 75-142 50-120 (129)
46 KOG1443 Predicted integral mem 97.6 0.001 2.2E-08 59.6 11.9 178 28-210 32-222 (349)
47 KOG1444 Nucleotide-sugar trans 97.6 0.023 5.1E-07 51.2 20.1 125 71-200 76-202 (314)
48 PRK10650 multidrug efflux syst 97.5 0.0065 1.4E-07 46.7 13.1 60 83-142 46-106 (109)
49 COG2076 EmrE Membrane transpor 97.4 0.0016 3.5E-08 49.6 8.8 59 84-142 42-101 (106)
50 PRK10452 multidrug efflux syst 97.3 0.0023 4.9E-08 50.1 9.0 59 84-142 42-101 (120)
51 PRK11431 multidrug efflux syst 97.2 0.0037 8.1E-08 47.7 9.3 59 84-142 41-100 (105)
52 PRK09541 emrE multidrug efflux 97.2 0.0043 9.4E-08 47.8 9.3 58 85-142 43-101 (110)
53 PF05653 Mg_trans_NIPA: Magnes 97.1 0.0044 9.5E-08 56.0 9.9 119 7-143 2-121 (300)
54 PF03151 TPT: Triose-phosphate 96.9 0.014 3E-07 46.5 10.8 94 157-251 1-110 (153)
55 PF08449 UAA: UAA transporter 96.9 0.098 2.1E-06 47.0 16.9 70 73-142 226-295 (303)
56 KOG1580 UDP-galactose transpor 96.8 0.02 4.3E-07 49.8 10.8 132 69-201 82-218 (337)
57 PF06800 Sugar_transport: Suga 96.8 0.024 5.2E-07 50.4 11.7 128 9-142 135-262 (269)
58 PRK13499 rhamnose-proton sympo 96.6 0.52 1.1E-05 43.5 19.5 102 71-173 72-190 (345)
59 COG5006 rhtA Threonine/homoser 96.5 0.072 1.6E-06 46.8 12.7 119 23-142 158-280 (292)
60 PF00893 Multi_Drug_Res: Small 96.4 0.014 3.1E-07 43.3 6.7 50 85-134 42-92 (93)
61 PF04657 DUF606: Protein of un 96.4 0.23 4.9E-06 39.7 14.1 117 23-141 12-138 (138)
62 TIGR00803 nst UDP-galactose tr 95.5 0.17 3.7E-06 43.2 10.3 85 99-184 5-112 (222)
63 TIGR00803 nst UDP-galactose tr 95.5 0.2 4.2E-06 42.8 10.6 63 78-140 158-220 (222)
64 COG2962 RarD Predicted permeas 95.4 1.4 3.1E-05 39.4 15.8 71 72-142 211-281 (293)
65 COG5070 VRG4 Nucleotide-sugar 95.3 0.39 8.6E-06 41.6 11.7 159 77-238 73-241 (309)
66 PF10639 UPF0546: Uncharacteri 95.3 0.042 9E-07 42.5 5.3 69 74-142 43-112 (113)
67 PF06027 DUF914: Eukaryotic pr 95.1 0.65 1.4E-05 42.7 13.2 133 9-143 165-304 (334)
68 KOG4510 Permease of the drug/m 95.0 0.013 2.7E-07 51.9 1.7 117 23-142 202-323 (346)
69 KOG1442 GDP-fucose transporter 94.6 0.051 1.1E-06 48.3 4.5 106 91-202 121-232 (347)
70 PF00892 EamA: EamA-like trans 94.6 0.094 2E-06 39.5 5.6 43 167-210 1-43 (126)
71 KOG1441 Glucose-6-phosphate/ph 94.6 0.14 3.1E-06 46.6 7.6 67 76-142 239-305 (316)
72 TIGR00688 rarD rarD protein. T 94.2 1.2 2.5E-05 38.7 12.3 50 70-119 206-255 (256)
73 KOG2765 Predicted membrane pro 94.1 0.46 1E-05 44.0 9.7 134 9-142 244-388 (416)
74 KOG1580 UDP-galactose transpor 93.9 0.11 2.4E-06 45.3 5.1 72 70-141 239-310 (337)
75 KOG1583 UDP-N-acetylglucosamin 93.8 0.018 3.9E-07 51.1 0.1 121 69-190 61-199 (330)
76 PF06379 RhaT: L-rhamnose-prot 92.5 7.5 0.00016 35.8 14.9 163 9-177 4-193 (344)
77 COG3238 Uncharacterized protei 91.7 6.2 0.00013 32.0 13.5 127 14-142 7-144 (150)
78 PRK02237 hypothetical protein; 91.1 5.6 0.00012 30.4 11.1 37 106-142 67-103 (109)
79 KOG2922 Uncharacterized conser 90.1 0.22 4.7E-06 45.2 2.5 59 85-143 77-135 (335)
80 PF02694 UPF0060: Uncharacteri 89.5 5.5 0.00012 30.4 9.2 37 106-142 65-101 (107)
81 KOG1582 UDP-galactose transpor 88.4 1.2 2.5E-05 39.9 5.7 136 66-205 100-240 (367)
82 COG1742 Uncharacterized conser 84.2 12 0.00027 28.4 8.5 35 108-142 68-102 (109)
83 PRK13499 rhamnose-proton sympo 83.3 38 0.00082 31.3 14.6 66 76-142 264-339 (345)
84 KOG1581 UDP-galactose transpor 82.8 20 0.00042 32.6 10.7 72 71-142 240-311 (327)
85 COG4975 GlcU Putative glucose 72.8 1.1 2.3E-05 39.5 -0.2 67 67-133 204-270 (288)
86 PF04342 DUF486: Protein of un 71.1 4.8 0.0001 30.6 3.0 30 113-142 77-106 (108)
87 KOG1444 Nucleotide-sugar trans 70.1 13 0.00029 33.7 6.1 69 74-142 230-298 (314)
88 COG3169 Uncharacterized protei 65.0 15 0.00033 27.7 4.5 30 113-142 84-113 (116)
89 COG2510 Predicted membrane pro 64.2 72 0.0016 25.4 9.3 43 158-201 5-47 (140)
90 PF04142 Nuc_sug_transp: Nucle 63.6 1E+02 0.0022 26.9 14.0 125 10-134 112-243 (244)
91 COG4975 GlcU Putative glucose 62.0 1.2 2.7E-05 39.1 -1.9 183 14-204 4-196 (288)
92 KOG4831 Unnamed protein [Funct 61.9 15 0.00033 28.1 4.1 69 74-142 54-123 (125)
93 KOG2322 N-methyl-D-aspartate r 52.3 1.6E+02 0.0035 25.7 9.4 71 118-190 157-229 (237)
94 COG5070 VRG4 Nucleotide-sugar 46.5 40 0.00087 29.5 4.7 63 74-136 226-288 (309)
95 PF10754 DUF2569: Protein of u 41.9 1.7E+02 0.0038 23.3 7.7 56 6-61 80-137 (149)
96 KOG1583 UDP-N-acetylglucosamin 41.3 28 0.0006 31.4 3.0 43 100-142 270-312 (330)
97 KOG1582 UDP-galactose transpor 41.2 2E+02 0.0044 26.0 8.4 46 97-142 285-330 (367)
98 PRK10213 nepI ribonucleoside t 40.1 2.9E+02 0.0063 25.2 18.0 23 120-142 78-100 (394)
99 PRK10862 SoxR reducing system 38.6 59 0.0013 26.3 4.4 28 92-119 68-95 (154)
100 COG3086 RseC Positive regulato 38.0 59 0.0013 26.3 4.2 29 91-119 67-95 (150)
101 PF04246 RseC_MucC: Positive r 36.6 51 0.0011 25.7 3.7 25 94-118 63-87 (135)
102 PF04550 Phage_holin_2: Phage 33.5 1.7E+02 0.0036 21.6 5.6 55 117-179 23-83 (89)
103 TIGR02865 spore_II_E stage II 33.4 5.5E+02 0.012 26.4 12.9 44 99-142 11-54 (764)
104 PF11628 TCR_zetazeta: T-cell 31.4 51 0.0011 19.6 2.1 20 109-128 13-32 (33)
105 KOG2489 Transmembrane protein 30.5 2E+02 0.0044 28.1 7.1 88 156-245 440-530 (592)
106 PRK10614 multidrug efflux syst 29.9 6.7E+02 0.014 26.7 11.6 25 221-245 464-488 (1025)
107 PF04657 DUF606: Protein of un 29.6 2.8E+02 0.0061 21.8 8.6 52 158-210 3-55 (138)
108 KOG1443 Predicted integral mem 28.1 4.8E+02 0.01 24.0 12.3 50 93-142 264-313 (349)
109 PF11023 DUF2614: Protein of u 28.0 1.2E+02 0.0026 23.4 4.2 23 121-143 5-27 (114)
110 KOG1442 GDP-fucose transporter 27.6 53 0.0012 29.6 2.6 129 11-139 184-322 (347)
111 KOG3912 Predicted integral mem 22.5 6E+02 0.013 23.2 9.3 49 94-142 284-332 (372)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=1.7e-40 Score=300.39 Aligned_cols=244 Identities=39% Similarity=0.605 Sum_probs=224.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhHHHHHHH
Q 043912 5 HVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ------RLQVSWYWYLLL 78 (255)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~l~~ 78 (255)
.++||+++.+++||+++++++++|..++.+.+++.+.|.++++++|+..++++.+...+|++ ..+++||+++++
T Consensus 6 ~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~ll 85 (334)
T PF06027_consen 6 LFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLL 85 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999988887666543 257899999999
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhccc---chh--hhch
Q 043912 79 GFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMF---FFQ--VFQD 153 (255)
Q Consensus 79 g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~---~~~--~~~~ 153 (255)
+++++.+|++.+.|++||++++++++.+++.+++++++++++|||+++.|++|++++++|+.++.... +.+ .+++
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~ 165 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN 165 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999985321 111 1224
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Q 043912 154 LYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCF 233 (255)
Q Consensus 154 ~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~ 233 (255)
...||+++++|| ++||++++++|+..|+.|+.+++++.+++|.+++.++..++|+.+.+..+|+.....++++|.++++
T Consensus 166 ~i~GDll~l~~a-~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf 244 (334)
T PF06027_consen 166 PILGDLLALLGA-ILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF 244 (334)
T ss_pred cchhHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence 589999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 043912 234 MFYTLATFVLKVILLI 249 (255)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (255)
.+|+++|.+++++||.
T Consensus 245 ~~y~l~p~~l~~ssAt 260 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSAT 260 (334)
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999999999985
No 2
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=247.23 Aligned_cols=240 Identities=35% Similarity=0.633 Sum_probs=219.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 043912 6 VTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQG 85 (255)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~ 85 (255)
+.||+++++.+||++++|+++.++.++.+++.+++.|..|+++.|.+.++++.|+.++|++-.+..|+.++++++.+..+
T Consensus 12 ~tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEa 91 (336)
T KOG2766|consen 12 STKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEA 91 (336)
T ss_pred hchhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecc
Confidence 38999999999999999999999999999998999999999999999999999999899988888899999999999999
Q ss_pred HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc-cch--hh-hchhhHHHHHH
Q 043912 86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM-FFF--QV-FQDLYWAIYLS 161 (255)
Q Consensus 86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~-~~~--~~-~~~~~~Gdll~ 161 (255)
|++...|+|||+.++.+++.+-..+-+++++|+|||.|++..|+.|+.+|+.|++++..+ +.+ +. +++...||.++
T Consensus 92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv 171 (336)
T KOG2766|consen 92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV 171 (336)
T ss_pred cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence 999899999999999999999999999999999999999999999999999999998532 111 11 23447899999
Q ss_pred HHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 043912 162 LLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATF 241 (255)
Q Consensus 162 l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 241 (255)
+.+| -+||+.++.+|...|+.|..+++++.+++|++++.++ .++|+.+....+|+.. +..+..+...++.+|.++|.
T Consensus 172 i~GA-TlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~-i~~yl~f~L~MFllYsl~pi 248 (336)
T KOG2766|consen 172 IAGA-TLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSA-IFLYLRFALTMFLLYSLAPI 248 (336)
T ss_pred Eecc-eeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHH-HHHHHHHHHHHHHHHHhhHH
Confidence 9999 9999999999999999999999999999999999998 7889988888999855 55556699999999999999
Q ss_pred HHHHhhh
Q 043912 242 VLKVILL 248 (255)
Q Consensus 242 ~~~~~~~ 248 (255)
.+|..||
T Consensus 249 l~k~~~a 255 (336)
T KOG2766|consen 249 LIKTNSA 255 (336)
T ss_pred heecCCc
Confidence 9999887
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.88 E-value=5.7e-20 Score=164.42 Aligned_cols=223 Identities=16% Similarity=0.116 Sum_probs=157.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHH
Q 043912 6 VTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR--LQVSWYWYLLLGFVDL 83 (255)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~~~l~~g~~~~ 83 (255)
|-||. .-..+.-+...++|++|++..|...++. +|......|+...+++++++..+++++ .++++......|.++.
T Consensus 2 ~~~~~-~~~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (292)
T PRK11272 2 RFRQL-LPLFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLL 79 (292)
T ss_pred chHHH-HHHHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 33444 3444457778899999999999876544 578889999999888877775444322 3455666677887765
Q ss_pred HH-HHHHHHHh-hhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHH
Q 043912 84 QG-NFLANKAY-QFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLS 161 (255)
Q Consensus 84 ~~-~~~~~~al-~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~ 161 (255)
.. +.+.+.+. +++++++++++.++.|+++++++.+ +|||++++++.|+.++++|+.++..+ +..+++..||+++
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~---~~~~~~~~G~l~~ 155 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG---GNLSGNPWGAILI 155 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC---cccccchHHHHHH
Confidence 44 55677888 8999999999999999999999986 69999999999999999999988321 1122346799999
Q ss_pred HHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHH
Q 043912 162 LLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFY 236 (255)
Q Consensus 162 l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 236 (255)
++|+ ++||.|++..||..++ ++.....++...+.+...+.....|.+.....+.+.+..+.+.+...+...+.
T Consensus 156 l~a~-~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~ 228 (292)
T PRK11272 156 LIAS-ASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAIS 228 (292)
T ss_pred HHHH-HHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999987544 34445566666676665554443332211112333444556666555544443
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.87 E-value=8.5e-20 Score=163.61 Aligned_cols=222 Identities=13% Similarity=0.022 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhh
Q 043912 17 GQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGN-FLANKAYQF 95 (255)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~al~~ 95 (255)
..+.+.++|++|++..|...++ -+|....++|+.++++++.++. ++++.++++++....+.+....+ .+.+.++++
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667888999999999988765 4688999999988888776653 22333334444555566655554 345666654
Q ss_pred ----chHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccc-hhh------hchhhHHHHHHHHh
Q 043912 96 ----TSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFF-FQV------FQDLYWAIYLSLLG 164 (255)
Q Consensus 96 ----Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~-~~~------~~~~~~Gdll~l~s 164 (255)
+++++++++.+++|+++++++++++|||++++|+.|++++++|++++..+.. .+. ..+...||+++++|
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 164 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG 164 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence 5778889999999999999999999999999999999999999999853211 110 01235699999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043912 165 PCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLK 244 (255)
Q Consensus 165 a~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 244 (255)
+ ++||.|+++.||..+++++..... . .+.+...++.. .+.....+.+++.+..+.+.+ ..+ ..-|.+-...+|
T Consensus 165 a-~~~A~~~v~~k~~~~~~~~~~~~~--~-~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~t-~~~~~l~~~al~ 237 (295)
T PRK11689 165 A-FIWAAYCNVTRKYARGKNGITLFF--I-LTALALWIKYF-LSPQPAMVFSLPAIIKLLLAA-AAM-GFGYAAWNVGIL 237 (295)
T ss_pred H-HHHHHHHHHHhhccCCCCchhHHH--H-HHHHHHHHHHH-HhcCccccCCHHHHHHHHHHH-HHH-HHHHHHHHHHHH
Confidence 9 999999999999887777765432 2 22233322222 232222223444444455555 334 334444445555
Q ss_pred Hhhh
Q 043912 245 VILL 248 (255)
Q Consensus 245 ~~~~ 248 (255)
..++
T Consensus 238 ~~~a 241 (295)
T PRK11689 238 HGNM 241 (295)
T ss_pred ccCH
Confidence 4443
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.86 E-value=1.6e-19 Score=157.81 Aligned_cols=175 Identities=18% Similarity=0.072 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhchHHHHH
Q 043912 25 AATNFTSSFIANLGVDAPVTQSAFSYFTLALVY-GGILLYRRQRLQVSWYWYLLLGFVDLQG-NFLANKAYQFTSITSVT 102 (255)
Q Consensus 25 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~l-l~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~al~~Ts~~~a~ 102 (255)
||++.+..|...++ ..|.....+||...+.++ .+.. +++ +.++++...+..|.++... +.+.+.|++++++++++
T Consensus 1 Wg~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ 77 (260)
T TIGR00950 1 WGTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLL-RRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA 77 (260)
T ss_pred CcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHH-Hhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 78888888887654 355666666666655444 4443 333 4455666777788777665 46789999999999999
Q ss_pred HHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 043912 103 LLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182 (255)
Q Consensus 103 ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~ 182 (255)
++.++.|+++++++.+++|||++++|+.|+.++++|+.++.. .+..+++..|+.++++++ ++|+.++++.||..++
T Consensus 78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~---~~~~~~~~~G~~~~l~a~-~~~a~~~~~~k~~~~~ 153 (260)
T TIGR00950 78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS---DGNLSINPAGLLLGLGSG-ISFALGTVLYKRLVKK 153 (260)
T ss_pred HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc---CCcccccHHHHHHHHHHH-HHHHHHHHHHhHHhhc
Confidence 999999999999999999999999999999999999999842 222233478999999999 9999999999998877
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHH
Q 043912 183 NDRV--EVVCMIGVYGLLVSSIQLSM 206 (255)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~~~~~~~~ 206 (255)
+|+. ....+....+.++..+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (260)
T TIGR00950 154 EGPELLQFTGWVLLLGALLLLPFAWF 179 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 7743 44445666676666544443
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.86 E-value=5.6e-19 Score=162.43 Aligned_cols=200 Identities=15% Similarity=0.091 Sum_probs=146.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h-h---hhhHHHHHHH
Q 043912 5 HVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R-L---QVSWYWYLLL 78 (255)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~-~---~~~~~~~l~~ 78 (255)
+||.+.+...+.-|++.. +-+..++...+++. .|....++|+.+++++++|+..++++ + . ++++....++
T Consensus 9 ~~~~~~~~~~~~~q~~~~---~~~~~~k~a~~~G~-~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~ 84 (358)
T PLN00411 9 RREAVFLTAMLATETSVV---GISTLFKVATSKGL-NIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLL 84 (358)
T ss_pred hhccchHHHHHHHHHHHH---HHHHHHHHHHHCCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 346677777777776542 33334444444454 57778899999999888887654321 1 1 2344566778
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHH------ccccCchhhHHHHHHHHHHHHHhhcccchh---
Q 043912 79 GFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL------LGTRYSPLKLFGAGICMLGLCVCSSMFFFQ--- 149 (255)
Q Consensus 79 g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~------l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~--- 149 (255)
|+++...+.+.+.|++||++++++++.+++|+++.++++++ +|||++++|++|++++++|+.+++...+.+
T Consensus 85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~ 164 (358)
T PLN00411 85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV 164 (358)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 88774334578999999999999999999999999999999 699999999999999999999886321110
Q ss_pred -----------------hhc-hhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 043912 150 -----------------VFQ-DLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRV-EVVCMIGVYGLLVSSIQLSMLEL 209 (255)
Q Consensus 150 -----------------~~~-~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~ 209 (255)
... |...||+++++|+ ++||+|+++.|+..+++++. ....+++..+.+...++....|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa-~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQG-IFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccccccCCCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 001 1256999999999 99999999999988888664 44566776666666666666664
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.84 E-value=7.2e-19 Score=157.79 Aligned_cols=172 Identities=10% Similarity=0.024 Sum_probs=136.2
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHH---HHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhH
Q 043912 33 FIANLGVDAPVTQSAFSYFTLALVYGGILL---YRRQR-LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCT 108 (255)
Q Consensus 33 ~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~---~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~ 108 (255)
|...+++..|...+..|+...++...+... +++++ .+++++..+.+|+++...+.+.+.+++++++++++++.+++
T Consensus 22 K~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~ 101 (302)
T TIGR00817 22 KKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAME 101 (302)
T ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 444445677888888887776655433311 11112 35667778889999766667899999999999999999999
Q ss_pred HHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhc--CCCHH
Q 043912 109 IAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVK--KNDRV 186 (255)
Q Consensus 109 p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~--~~~~~ 186 (255)
|+++++++++++|||++++++.|++++++|+.+.. .. ..+.+..||+++++|+ ++||+|+++.||..+ ++|+.
T Consensus 102 Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~-~~~~~~~G~~~~l~a~-~~~a~~~v~~k~~~~~~~~~~~ 176 (302)
T TIGR00817 102 PFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DT-ELSFNWAGFLSAMISN-ITFVSRNIFSKKAMTIKSLDKT 176 (302)
T ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CC-cccccHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCCcc
Confidence 99999999999999999999999999999998762 11 1223467999999999 999999999999887 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 043912 187 EVVCMIGVYGLLVSSIQLSMLEL 209 (255)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~e~ 209 (255)
+.+.++...+.+...|.....|.
T Consensus 177 ~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 177 NLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999998888887776665563
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.84 E-value=3.6e-18 Score=153.33 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 043912 18 QLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNF-LANKAYQFT 96 (255)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~al~~T 96 (255)
-+++.++||++++..|...++ .+|.....+|+.++++.++++. +++ + +++...+..|++....++ +.+.+++++
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~-~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV-ARP-K--VPLNLLLGYGLTISFGQFAFLFCAINFG 83 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh-cCC-C--CchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999987655 4688999999988776655543 221 1 223334455555544443 567888884
Q ss_pred -hHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHH
Q 043912 97 -SITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQN 175 (255)
Q Consensus 97 -s~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~ 175 (255)
++++++++.+++|+++++++++++|||+++++++|++++++|+.++..+. .+..+.+..||+++++++ ++||.|+++
T Consensus 84 ~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~-~~~~~~~~~G~~l~l~aa-l~~a~~~v~ 161 (299)
T PRK11453 84 MPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS-LNGQHVAMLGFMLTLAAA-FSWACGNIF 161 (299)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-CCCcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 78899999999999999999999999999999999999999999984211 111111347999999999 999999999
Q ss_pred HHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHhhccc-----cccccchHHHHHHHHHHHHHHHHHHHHH
Q 043912 176 LEYFVKKNDRVEV---VCMIGVYGLLVSSIQLSMLELKS-----LELVKWSTDIILGFVGYAVSCFMFYTLA 239 (255)
Q Consensus 176 ~k~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 239 (255)
.||..++.++... ..+++..+.+.........|.+. ..+.+++.+..+.+.+..++.+.|+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~ 233 (299)
T PRK11453 162 NKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWG 233 (299)
T ss_pred HHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997665543322 23333333222221222334321 1223444555677777777766666543
No 9
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.81 E-value=3.7e-17 Score=143.29 Aligned_cols=154 Identities=15% Similarity=-0.032 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh------hhh----hhhHH-HHHHHHHHHHHH
Q 043912 17 GQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR------QRL----QVSWY-WYLLLGFVDLQG 85 (255)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~------~~~----~~~~~-~~l~~g~~~~~~ 85 (255)
..+++.+.|+++.+..|... + .+|....+.|.++.++++.++...++ ++. +++++ .....|.+....
T Consensus 6 ~~i~a~~~wg~~~~~~k~~~-~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 83 (256)
T TIGR00688 6 VSLLASFLFGYMYYYSKLLK-P-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFN 83 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 45666777888888888743 3 46788888898887776655542221 111 12222 234455554445
Q ss_pred HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhH
Q 043912 86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGP 165 (255)
Q Consensus 86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa 165 (255)
+.+++.|++++++++++++.+++|+++++++++++|||++++|+.|++++++|+.++. .. ..+. ..++++++
T Consensus 84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~---~~--~~~~---~~~~l~aa 155 (256)
T TIGR00688 84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI---VL--KGSL---PWEALVLA 155 (256)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HH--cCCc---hHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999883 11 1111 14688899
Q ss_pred HHHHHHHHHHHHHhhc
Q 043912 166 CSMLSFSLQNLEYFVK 181 (255)
Q Consensus 166 ~~~~A~~~v~~k~~~~ 181 (255)
++||.|.+..||..+
T Consensus 156 -~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 156 -FSFTAYGLIRKALKN 170 (256)
T ss_pred -HHHHHHHHHHhhcCC
Confidence 999999999998654
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.75 E-value=1.7e-15 Score=139.18 Aligned_cols=168 Identities=14% Similarity=0.097 Sum_probs=131.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHH--Hh-hhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHH
Q 043912 37 LGVDAPVTQSAFSYFTLALVYGGILLY--RR-QRL---QVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIA 110 (255)
Q Consensus 37 ~~~~~P~~~~~~~~~~~~~~ll~~~~~--~~-~~~---~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~ 110 (255)
+...-|...+.+|+++.++....+... ++ ++. +++++..+.+|+++..++...+.|+++++++.++++.+++|+
T Consensus 73 ~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pv 152 (350)
T PTZ00343 73 NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPV 152 (350)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHH
Confidence 345449999999999876654333211 11 222 345678889999998887778899999999999999999999
Q ss_pred HHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCC-------
Q 043912 111 WALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKN------- 183 (255)
Q Consensus 111 ~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~------- 183 (255)
++++++++++|||++++++.+++++++|+.+.. .. ..+.+..|++++++|+ ++||.|+++.||..++.
T Consensus 153 ft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~---~~-~~~~~~~G~~~~l~s~-~~~a~~~i~~k~~~~~~~~~~~~~ 227 (350)
T PTZ00343 153 FTALLSILFLKQFLNLYAYLSLIPIVGGVALAS---VK-ELHFTWLAFWCAMLSN-LGSSLRSIFAKKTMKNKSEIGENL 227 (350)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee---cc-cchhHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999999999999983 11 1122467999999999 99999999999987643
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043912 184 DRVEVVCMIGVYGLLVSSIQLSMLEL 209 (255)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~e~ 209 (255)
++.+....+...+.++..|.....|.
T Consensus 228 ~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 228 TASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666677888887776665664
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.75 E-value=1.6e-15 Score=135.81 Aligned_cols=229 Identities=12% Similarity=-0.024 Sum_probs=148.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHH
Q 043912 5 HVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR-LQVSWYWYLLLGFVDL 83 (255)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~l~~g~~~~ 83 (255)
.||.+..+++..--+.+++ |+++....|...++ -+|....++|+++.++++.++...++++ .+++++..+..|.+..
T Consensus 5 ~~~~~~~~~~~~~~la~~~-~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 5 LRKLPVWLPILLLLIAMAS-IQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLG 82 (293)
T ss_pred ccccccchHHHHHHHHHHH-HHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHH
Confidence 4566677777555554444 45555566655544 4677899999999888776654322322 3456666667777766
Q ss_pred HHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHH
Q 043912 84 QGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLL 163 (255)
Q Consensus 84 ~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~ 163 (255)
..+.+.+.++++++++.++.+.+++|+++.+++ +||+++ ..++.++++|+.++... +.+..+.+..||+++++
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~-~~~~~~~~~~G~ll~l~ 155 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPL-GQDVSHVDLTGAALALG 155 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeec-CCCcccCChHHHHHHHH
Confidence 667788899999999999999999999998876 366554 45567889999987421 11111223579999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043912 164 GPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVL 243 (255)
Q Consensus 164 sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 243 (255)
++ ++||.|++..||..+++++... ..+.+.+.++..+.... +.. ....+++.+....+++..++.+.|. +-...+
T Consensus 156 aa-~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~l~lgv~~t~~~~~-l~~~~~ 230 (293)
T PRK10532 156 AG-ACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGAL-QAG-EALWHWSILPLGLAVAILSTALPYS-LEMIAL 230 (293)
T ss_pred HH-HHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHH-ccC-cccCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99 9999999999998777777665 34555665555443332 221 1122333333445666655555544 333444
Q ss_pred HHhh
Q 043912 244 KVIL 247 (255)
Q Consensus 244 ~~~~ 247 (255)
|+.+
T Consensus 231 ~~~~ 234 (293)
T PRK10532 231 TRLP 234 (293)
T ss_pred HhcC
Confidence 4443
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.74 E-value=3.7e-15 Score=133.62 Aligned_cols=160 Identities=12% Similarity=-0.022 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h----h-hhhHHHHHHHHHHH
Q 043912 10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R----L-QVSWYWYLLLGFVD 82 (255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~----~-~~~~~~~l~~g~~~ 82 (255)
..+++.... .+.+.|+.+.+..|... + .+|......|..+..+++.++...+++ + . +++.+.....+.+.
T Consensus 6 ~~~g~~~~l-~a~~~wg~~~~~~k~~~-~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 6 TRQGVLLAL-AAYFIWGIAPAYFKLIY-Y-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 345555544 44455677777767653 3 457788888888877666665433221 1 1 11222233456565
Q ss_pred HHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHH
Q 043912 83 LQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLS 161 (255)
Q Consensus 83 ~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~ 161 (255)
... +.+++.|++++++++++++.+++|+++++++++++|||++++++.|++++++|+.++.. . ..+ .+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~---~--~~~---~~~~~ 154 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW---T--FGS---LPIIA 154 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH---H--cCC---ccHHH
Confidence 555 56799999999999999999999999999999999999999999999999999999831 1 111 13578
Q ss_pred HHhHHHHHHHHHHHHHHhhc
Q 043912 162 LLGPCSMLSFSLQNLEYFVK 181 (255)
Q Consensus 162 l~sa~~~~A~~~v~~k~~~~ 181 (255)
++++ ++||.|++..||..+
T Consensus 155 l~aa-~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 155 LGLA-FSFAFYGLVRKKIAV 173 (296)
T ss_pred HHHH-HHHHHHHHHHHhcCC
Confidence 8899 999999999888643
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.70 E-value=5.4e-15 Score=131.55 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--h---hhhhhhHHHHHHHHHHHHH-HHHH
Q 043912 15 SIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYR--R---QRLQVSWYWYLLLGFVDLQ-GNFL 88 (255)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~--~---~~~~~~~~~~l~~g~~~~~-~~~~ 88 (255)
.+.-..+++++..+...++..++ +.+. ...+....++++.|+...+ + ++.+++++.....+.++.. .+.+
T Consensus 4 ~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 4 TLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 44555666666666666656543 3343 2434444555566665433 1 2234455555555555444 4567
Q ss_pred HHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHH
Q 043912 89 ANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSM 168 (255)
Q Consensus 89 ~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~ 168 (255)
.+.|++++++++++.+.++.|+++.+++++++|||++++++.|+.++++|+.++..+ +....+..|+.++++++ ++
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~---~~~~~~~~g~~~~l~aa-l~ 155 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS---RFAQHRRKAYAWALAAA-LG 155 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---cccccchhHHHHHHHHH-HH
Confidence 899999999999999999999999999999999999999999999999999988421 11122356899999999 99
Q ss_pred HHHHHHHHHHhhcCCCH
Q 043912 169 LSFSLQNLEYFVKKNDR 185 (255)
Q Consensus 169 ~A~~~v~~k~~~~~~~~ 185 (255)
|+.|++..|+..++.++
T Consensus 156 ~a~~~i~~k~~~~~~~~ 172 (281)
T TIGR03340 156 TAIYSLSDKAAALGVPA 172 (281)
T ss_pred HHHhhhhccccccchhc
Confidence 99999998876544443
No 14
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.70 E-value=9.2e-16 Score=133.55 Aligned_cols=226 Identities=19% Similarity=0.264 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHh-------cCCChhHHHHHHHHHHHHHHHHHHHHHHhhh------------h---hhh--HHHHHHHHH
Q 043912 25 AATNFTSSFIAN-------LGVDAPVTQSAFSYFTLALVYGGILLYRRQR------------L---QVS--WYWYLLLGF 80 (255)
Q Consensus 25 ~~~~~~~~~~~~-------~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~------------~---~~~--~~~~l~~g~ 80 (255)
-.-|.+.+|-.+ .+++.|+.++...++--.+|+..+.+.|++. . +.+ ...++..++
T Consensus 15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal 94 (372)
T KOG3912|consen 15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPAL 94 (372)
T ss_pred ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHH
Confidence 344556666554 2588999999999987767765555444320 1 111 234567899
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc-cc--hhhhc---hh
Q 043912 81 VDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM-FF--FQVFQ---DL 154 (255)
Q Consensus 81 ~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~-~~--~~~~~---~~ 154 (255)
++.+++.+.+.|+.+|++++-+++.....+|+.+++.-+|+++++.+||+|+....+|++++... .- .|.-. +.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i 174 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI 174 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998421 11 11111 12
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhc----cc--------c-------c
Q 043912 155 YWAIYLSLLGPCSMLSFSLQNLEYFVKK--NDRVEVVCMIGVYGLLVSSIQLSMLEL----KS--------L-------E 213 (255)
Q Consensus 155 ~~Gdll~l~sa~~~~A~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~--------~-------~ 213 (255)
..||++.+.+. +.-|.+.+.+||..++ .+|.+.+++++.+|.++......+... ++ + .
T Consensus 175 itGdllIiiaq-iivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 175 ITGDLLIIIAQ-IIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred hhhhHHHHHHH-HHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 68999999999 9999999999998876 569999999999997765444433321 00 1 1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912 214 LVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDH 251 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 251 (255)
.++..+...+...++.+|+..||...-.+.|++||--|
T Consensus 254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattR 291 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTR 291 (372)
T ss_pred HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHH
Confidence 11223345678889999999999999999999998544
No 15
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.67 E-value=2.1e-15 Score=135.87 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchh----h
Q 043912 75 YLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQ----V 150 (255)
Q Consensus 75 ~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~----~ 150 (255)
.+....+.+.+|+..+.|+.+|++++.+++.++.-+|+..++.++..||+|..|.+++.++++|++++..+...+ .
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 455667788899999999999999999999999999999999999999999999999999999999995321100 0
Q ss_pred hchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 043912 151 FQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND----RVEVVCMIGVYGLLVSSIQLSMLELKSLELV 215 (255)
Q Consensus 151 ~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 215 (255)
.+....||+++++|| +.||+|+++.||...+++ .-.+.+..|++..++.+|+..+++....|++
T Consensus 242 a~~~llG~llaL~sA-~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F 309 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSA-LLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF 309 (416)
T ss_pred ccchhHHHHHHHHHH-HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc
Confidence 112379999999999 999999999999877663 3345688899999999988887765444443
No 16
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.65 E-value=3.9e-13 Score=117.93 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhch
Q 043912 23 TFAATNFTSSFIANLGVDAPVTQSAF-SYFTLALVYGGILLYRR---QRLQVSWYWYLLLGFVDLQG-NFLANKAYQFTS 97 (255)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~~~~ll~~~~~~~---~~~~~~~~~~l~~g~~~~~~-~~~~~~al~~Ts 97 (255)
+.|+.+....+...++ +.|.....+ |.........+...+++ ++.+++++...+.+.+.... +.+++.++++++
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (292)
T COG0697 17 LLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTS 95 (292)
T ss_pred HHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666555544 345555544 76666555333322211 11222233455555555554 567889999999
Q ss_pred HHHHHHHhhhHHHHHHHHHH-HHccccCchhhHHHHHHHHHHHHHhhcccchhhhch--hhHHHHHHHHhHHHHHHHHHH
Q 043912 98 ITSVTLLDGCTIAWALILTR-LLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQD--LYWAIYLSLLGPCSMLSFSLQ 174 (255)
Q Consensus 98 ~~~a~ll~~~~p~~v~ll~~-l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~--~~~Gdll~l~sa~~~~A~~~v 174 (255)
+++++.+.++.|+++.++++ +++|||++++++.|+.+++.|+.++..+ +..++ ...|+++++.++ ++||.+++
T Consensus 96 ~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~---~~~~~~~~~~g~~~~l~a~-~~~a~~~~ 171 (292)
T COG0697 96 ASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG---GGGGGILSLLGLLLALAAA-LLWALYTA 171 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC---CCcchhHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999997 7779999999999999999999999422 12211 358999999999 99999999
Q ss_pred HHHHhhcCCCHHHHHH-HHHH
Q 043912 175 NLEYFVKKNDRVEVVC-MIGV 194 (255)
Q Consensus 175 ~~k~~~~~~~~~~~~~-~~~~ 194 (255)
..|+.. +.++..... ++..
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~ 191 (292)
T COG0697 172 LVKRLS-RLGPVTLALLLQLL 191 (292)
T ss_pred HHHHhc-CCChHHHHHHHHHH
Confidence 999877 666655554 4443
No 17
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.45 E-value=1.7e-11 Score=107.40 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=136.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccch
Q 043912 69 QVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFF 148 (255)
Q Consensus 69 ~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~ 148 (255)
+++..++.++++++...|.+.+.++++.+++.-+++.++-++++++++++++|+|++++||.++.+-++|+.++-.+...
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999988532111
Q ss_pred h----hh---------chhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 043912 149 Q----VF---------QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSIQLSMLELKSLE 213 (255)
Q Consensus 149 ~----~~---------~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 213 (255)
+ .. .+...|..+++.++ ++-|+..++.||..|+.+ .........++|.++..+.....+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~-~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAA-FLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHH-HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 1 00 11368999999999 999999999999998754 34445677778888876554443332222
Q ss_pred cc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912 214 LV----KWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDH 251 (255)
Q Consensus 214 ~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 251 (255)
+- .|+.+. ...++........+..+.||.+.|-+
T Consensus 173 ~~g~f~G~~~~~----~~~i~~~a~gGllva~v~KyadnI~K 210 (244)
T PF04142_consen 173 ESGFFHGYSWWV----WIVIFLQAIGGLLVAFVLKYADNIVK 210 (244)
T ss_pred cCCchhhcchHH----HHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 11 233332 23455677788889999999998854
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.44 E-value=9.7e-11 Score=105.46 Aligned_cols=173 Identities=19% Similarity=0.193 Sum_probs=133.5
Q ss_pred HHHhcCCCh--hHHHHHHHHHHHHHHHHHHHHH-H-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhH
Q 043912 33 FIANLGVDA--PVTQSAFSYFTLALVYGGILLY-R-RQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCT 108 (255)
Q Consensus 33 ~~~~~~~~~--P~~~~~~~~~~~~~~ll~~~~~-~-~~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~ 108 (255)
++...+... |...++..+...++.-.+.... + +++.+.+++.+...++++.....+.+.+++|.+.....++.+..
T Consensus 21 ~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~ 100 (303)
T PF08449_consen 21 KIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSK 100 (303)
T ss_pred HHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhH
Confidence 444433334 7788887777665543333322 2 23456667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccc-hhhhch-----hhHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 043912 109 IAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFF-FQVFQD-----LYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182 (255)
Q Consensus 109 p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~-~~~~~~-----~~~Gdll~l~sa~~~~A~~~v~~k~~~~~ 182 (255)
|+.+++++.+++|||++++|++++++..+|+++...... .+..++ ...|+.+.+++. ++.|.+.+++||..++
T Consensus 101 ~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl-~~~a~~~~~qe~~~~~ 179 (303)
T PF08449_consen 101 PIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSL-LLDAFTGVYQEKLFKK 179 (303)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998742111 111111 134999999999 9999999999999875
Q ss_pred C--CHHHHHHHHHHHHHHHHHHHHHH
Q 043912 183 N--DRVEVVCMIGVYGLLVSSIQLSM 206 (255)
Q Consensus 183 ~--~~~~~~~~~~~~~~~~~~~~~~~ 206 (255)
+ ++.+.+....+++.+...+....
T Consensus 180 ~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 180 YGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 47788888888888887766655
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.28 E-value=9.8e-10 Score=98.51 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH-HHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHh
Q 043912 17 GQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGIL-LYRRQRL--QVSWYWYLLLGFVDLQGNFLANKAY 93 (255)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~-~~~~~~~--~~~~~~~l~~g~~~~~~~~~~~~al 93 (255)
..+++.+.||++.+..|... +.+.+ +.. +..+.++++.... ..++++. ++.+...++.|.+...+|.+++.+.
T Consensus 5 ~~lia~~~wGs~g~~~k~~~-g~~~~--~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai 80 (290)
T TIGR00776 5 IALIPALFWGSFVLINVKIG-GGPYS--QTL-GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM 80 (290)
T ss_pred HHHHHHHHHhhhHHHHhccC-CCHHH--HHH-HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34556677888777776554 44333 332 4333444332222 2232121 1122234455566667788999999
Q ss_pred hhchHHHHHHHhh-hHHHHHHHHHHHHccccCchhh----HHHHHHHHHHHHHhhcccchhhh----chhhHHHHHHHHh
Q 043912 94 QFTSITSVTLLDG-CTIAWALILTRLLLGTRYSPLK----LFGAGICMLGLCVCSSMFFFQVF----QDLYWAIYLSLLG 164 (255)
Q Consensus 94 ~~Ts~~~a~ll~~-~~p~~v~ll~~l~l~ek~~~~~----~~gi~l~~~Gv~li~~~~~~~~~----~~~~~Gdll~l~s 164 (255)
++++++.+..+.+ +.|+++.+.+.+++|||.++++ +.|++++++|++++......+.. .+...|..++++|
T Consensus 81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~s 160 (290)
T TIGR00776 81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMS 160 (290)
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHH
Confidence 9999999988877 8888999999999999999999 99999999998887432111111 1226899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043912 165 PCSMLSFSLQNLEYFVKKNDRVEVVCMIG 193 (255)
Q Consensus 165 a~~~~A~~~v~~k~~~~~~~~~~~~~~~~ 193 (255)
+ ++|+.|.+..|+. ++||.+.+..+.
T Consensus 161 g-~~y~~~~~~~~~~--~~~~~~~~~~~~ 186 (290)
T TIGR00776 161 T-IGYLVYVVVAKAF--GVDGLSVLLPQA 186 (290)
T ss_pred H-HHHHHHHHHHHHc--CCCcceehhHHH
Confidence 9 9999999999875 478887755444
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.23 E-value=2.5e-10 Score=88.19 Aligned_cols=95 Identities=23% Similarity=0.427 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hh-hhhHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHH
Q 043912 47 AFSYFTLALVYGGILLYRRQ------RL-QVSWYWYLLLGFVDL-QGNFLANKAYQFTSITSVTLLDGCTIAWALILTRL 118 (255)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~------~~-~~~~~~~l~~g~~~~-~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l 118 (255)
.+|+....+.+......+++ .. ++++......|.++. ..+.+++.|+++++ +.++.+.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 35666665555444433221 12 233455566677776 45667999999999 58889999999999999999
Q ss_pred HccccCchhhHHHHHHHHHHHHHh
Q 043912 119 LLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 119 ~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++|||++++++.|++++++|++++
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li 104 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILI 104 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999
No 21
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=2.9e-10 Score=87.47 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH--Hhh--hh-hhhHHHHHHHHHHH-HHHHHHHHHHhhhch
Q 043912 24 FAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLY--RRQ--RL-QVSWYWYLLLGFVD-LQGNFLANKAYQFTS 97 (255)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~--~~~--~~-~~~~~~~l~~g~~~-~~~~~~~~~al~~Ts 97 (255)
.|+.+.+..+...++ .+|......|.....+ +++.... +++ +. ++++......|.+. ..++.+++.++++++
T Consensus 2 ~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 355556666555444 4577888888887775 3333222 221 22 33445566677775 555778999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 98 ITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 98 ~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++.++.+.++.|+++.+++++++|||++++++.|+.+.+.|++++
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 22
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.05 E-value=2e-11 Score=106.03 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 043912 20 ASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ-----RLQVSWYWYLLLGFVDLQGNFLANKAYQ 94 (255)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~-----~~~~~~~~~l~~g~~~~~~~~~~~~al~ 94 (255)
++..+-.+.+++++..+ ..|..+.-.|.+.-.++..|-.+++++ +-++.| +++=|+.++.+-+..+.+++
T Consensus 45 vs~ff~~~~vv~t~~~e---~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~tgvmlmyya~~ 119 (346)
T KOG4510|consen 45 VSYFFNSCMVVSTKVLE---NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFTGVMLMYYALM 119 (346)
T ss_pred hHHHHhhHHHhhhhhhc---cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhhHHHHHHHHHh
Confidence 34677777777777664 245566666643333332333333332 223333 34456777777777889999
Q ss_pred hchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc---cchhhhc-------hhhHHHHHHHHh
Q 043912 95 FTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM---FFFQVFQ-------DLYWAIYLSLLG 164 (255)
Q Consensus 95 ~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~---~~~~~~~-------~~~~Gdll~l~s 164 (255)
|.+.+.+++++.++|.++.+++|.+||||.|+...+|..+.+.|+++|..+ +|.+... .+.+|..-++.+
T Consensus 120 ~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s 199 (346)
T KOG4510|consen 120 YMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISS 199 (346)
T ss_pred hcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHh
Confidence 999999999999999999999999999999999999999999999999753 2222211 237888999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 043912 165 PCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQL 204 (255)
Q Consensus 165 a~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (255)
+ ++-|--.++.|+.-|+.+....+...+..+.+.+.+..
T Consensus 200 ~-lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~ 238 (346)
T KOG4510|consen 200 V-LFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGC 238 (346)
T ss_pred H-hhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHH
Confidence 9 77777777888876766543333333444444444333
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.99 E-value=4.6e-09 Score=81.93 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h---hhhhHHHHHHHHHHHHH-HHHHH
Q 043912 16 IGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R---LQVSWYWYLLLGFVDLQ-GNFLA 89 (255)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~---~~~~~~~~l~~g~~~~~-~~~~~ 89 (255)
+.-+++.++++-+.+.+|..-++.+ |-+.+..|.......+..++...++ . ..++.+.++.++.+... +..++
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence 4456677889999999999988775 6788999988776655544433322 1 23333445544444444 45678
Q ss_pred HHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 90 NKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 90 ~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+.+++.-+++...=+..+.|.++.+++++++|||++.++++|+.+-.+|.+++
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 99999999999999999999999999999999999999999999999999876
No 24
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.94 E-value=4.3e-08 Score=85.52 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh--h-hhhHHHHHHHHHHHH-HH
Q 043912 10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR--L-QVSWYWYLLLGFVDL-QG 85 (255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~--~-~~~~~~~l~~g~~~~-~~ 85 (255)
...+..+..+.+++++..+...++..++....+......+.....+++.|.....++. . ++++...+..+.++. .+
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887776643211223344455666666666665433222 1 234444566676664 45
Q ss_pred HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHH
Q 043912 86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGL 139 (255)
Q Consensus 86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv 139 (255)
+.+++.++++++++.++.+.++.|+++++++++++|||++..++.|..+.+.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 677999999999999999999999999999999999999999999999999986
No 25
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.90 E-value=1.6e-08 Score=84.78 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHH
Q 043912 79 GFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAI 158 (255)
Q Consensus 79 g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gd 158 (255)
.++....|+.+..+++..|++.++-+.+.+-.|+-+++++.+|+|+...|+++..+++.|++++.. ..+...|...|.
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay--~DN~~a~e~iGi 137 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY--ADNEHADEIIGI 137 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe--ccchhhhhhhhH
Confidence 455666799999999999999999999999999999999999999999999999999999999831 122345668999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 043912 159 YLSLLGPCSMLSFSLQNLEYFVKKND---RVEVVCMIGVYGLLVSSIQLSMLELKSLE 213 (255)
Q Consensus 159 ll~l~sa~~~~A~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 213 (255)
.++++|| ..-|+|.+..|+.....+ .-.++...+++...+...+..++....++
T Consensus 138 ~~AV~SA-~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE 194 (290)
T KOG4314|consen 138 ACAVGSA-FMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVE 194 (290)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchH
Confidence 9999999 999999999999887643 45567778888888877776665543333
No 26
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.85 E-value=1.4e-06 Score=76.97 Aligned_cols=183 Identities=16% Similarity=0.037 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH---HHHHhhh---hhhhHH--HHHHHHHHHH
Q 043912 12 HLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI---LLYRRQR---LQVSWY--WYLLLGFVDL 83 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~---~~~~~~~---~~~~~~--~~l~~g~~~~ 83 (255)
+|+..+ +.|-+.||--..-.++.+. .|.....-.+.+-+.+++.. ..++++. ..++.+ .....+....
T Consensus 7 ~Gil~~-l~Ay~lwG~lp~y~kll~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 7 KGILLA-LLAYLLWGLLPLYFKLLEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred chhHHH-HHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 455544 4455667766666666642 34445444555444432221 1233222 222222 2334444445
Q ss_pred HHHH-HHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHH
Q 043912 84 QGNF-LANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSL 162 (255)
Q Consensus 84 ~~~~-~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l 162 (255)
..|+ .+.+|.+.-.+.++++=+..+|.+..+++++|+|||+++.|++++.++.+||.... ...++.. ..++
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~------~~~g~lp--wval 154 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT------WLLGSLP--WVAL 154 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH------HHcCCCc--HHHH
Confidence 5676 57899999999999999999999999999999999999999999999999999873 1122211 2344
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043912 163 LGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLEL 209 (255)
Q Consensus 163 ~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 209 (255)
.=+ ++|+.|-..-|+. +.|+.+-.+..+++-.+.+.......+.
T Consensus 155 ~la-~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~ 198 (293)
T COG2962 155 ALA-LSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLAD 198 (293)
T ss_pred HHH-HHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhc
Confidence 456 8899999765543 5677777777776666666544444444
No 27
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.79 E-value=7.5e-08 Score=87.01 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=148.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHh-h--h--hhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHH
Q 043912 38 GVDAPVTQSAFSYFTLALVYGGILLYRR-Q--R--LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWA 112 (255)
Q Consensus 38 ~~~~P~~~~~~~~~~~~~~ll~~~~~~~-~--~--~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v 112 (255)
++.-|...+.+.....++........+- + + .+..+...+.+|++...+..+.+.++.+.+++-...+-+++|+++
T Consensus 44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t 123 (316)
T KOG1441|consen 44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFT 123 (316)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhH
Confidence 6778888888865555544322211111 1 1 234577888899999989999999999999999999999999999
Q ss_pred HHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhc----CCCHHHH
Q 043912 113 LILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVK----KNDRVEV 188 (255)
Q Consensus 113 ~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~----~~~~~~~ 188 (255)
.++++++.+|++++..++.+.....|+.+-. .. +.+-+..|...++.+- +..+..+++.|+..+ +.|+.+.
T Consensus 124 vl~~~~~~~~~~s~~~~lsL~piv~GV~ias---~~-e~~fn~~G~i~a~~s~-~~~al~~I~~~~ll~~~~~~~~~~~l 198 (316)
T KOG1441|consen 124 VLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS---VT-ELSFNLFGFISAMISN-LAFALRNILSKKLLTSKGESLNSMNL 198 (316)
T ss_pred HHHHHHHhCCCCcceEEEEEEEeeeeEEEee---ec-cccccHHHHHHHHHHH-HHHHHHHHHHHHhhhccccccCchHH
Confidence 9999999999999999999888888887772 11 1122478999999999 999999999998873 2567888
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcccc---ccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912 189 VCMIGVYGLLVSSIQLSML-ELKSL---ELVKWSTDII-LGFVGYAVSCFMFYTLATFVLKVILLIDH 251 (255)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-e~~~~---~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 251 (255)
...+.-.+.....+|.... |.+.. ...+|+.... ..+.. +....+|...=.++...|++=|
T Consensus 199 l~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--v~~f~~Nls~f~~ig~tSalT~ 264 (316)
T KOG1441|consen 199 LYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS--VLAFLLNLSAFLVIGRTSALTY 264 (316)
T ss_pred HHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH--HHHHHHHHHHHHHHcccCchhh
Confidence 8777777777776454444 44333 2224443332 22222 6667777777667776666543
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.71 E-value=2.8e-05 Score=70.60 Aligned_cols=176 Identities=13% Similarity=0.065 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccch--
Q 043912 71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFF-- 148 (255)
Q Consensus 71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~-- 148 (255)
+..+..+.+++...-|.+++.++.+-+++..++..++-++-+++++.++||||++++||.++++.++|+.++--+...
T Consensus 91 ~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 91 ETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 345667778888777778999999999999999999999999999999999999999999999999999999310011
Q ss_pred hhh-----chhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhccccc--cc--cc
Q 043912 149 QVF-----QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSIQLSMLELKSLE--LV--KW 217 (255)
Q Consensus 149 ~~~-----~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~--~~ 217 (255)
+.. .+...|....+.++ ..=+...++.||..|+-+ .......+.++|.+++......-+..... .+ .|
T Consensus 171 ~a~~~~~~~n~~~G~~avl~~c-~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~ 249 (345)
T KOG2234|consen 171 GAKSESSAQNPFLGLVAVLVAC-FLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGY 249 (345)
T ss_pred CccCCCcccchhhhHHHHHHHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccc
Confidence 011 11256777777666 999999999999987643 33334566778888876555554433221 11 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912 218 STDIILGFVGYAVSCFMFYTLATFVLKVILLIDH 251 (255)
Q Consensus 218 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 251 (255)
+...+.. ++.......++..+.||-+-|-|
T Consensus 250 s~~vw~v----Vl~~a~gGLlvs~v~KyADnIlK 279 (345)
T KOG2234|consen 250 SSIVWLV----VLLNAVGGLLVSLVMKYADNILK 279 (345)
T ss_pred cHHHHHH----HHHHhccchhHHHHHHHhHHHHH
Confidence 4333322 33444555666677777665543
No 29
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.62 E-value=2.2e-06 Score=76.74 Aligned_cols=130 Identities=13% Similarity=0.049 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh--hh-hhHHHHHHHHHHHHHH-H
Q 043912 11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR--LQ-VSWYWYLLLGFVDLQG-N 86 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~--~~-~~~~~~l~~g~~~~~~-~ 86 (255)
..|.+++-..+++++..+...++..++ ..|.... ......++++.|+.....+. .. ..+...+.+|++.... +
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAE--HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 357777878887877777777777543 2343333 33344445555554332211 11 1122235667766554 5
Q ss_pred HHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912 87 FLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 87 ~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
.+++.++++.++++++++.++.|++..++++++++|+++..+++|..+.++|++...
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999998873
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.58 E-value=2.9e-05 Score=67.57 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=125.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHH
Q 043912 40 DAPVTQSAFSYFTLALVYGGILLY-RRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRL 118 (255)
Q Consensus 40 ~~P~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l 118 (255)
.-|.-.+..|-.+.+++++++... |++.-++++...+..|.....-|.++|.+++..+.+.+.-+-.+.|+.+..+
T Consensus 38 vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~--- 114 (292)
T COG5006 38 VGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL--- 114 (292)
T ss_pred cChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH---
Confidence 345677788888888877666432 3333466777777888887777999999999999999999999999876554
Q ss_pred HccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 043912 119 LLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLL 198 (255)
Q Consensus 119 ~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~ 198 (255)
..+|. ++.+-+.+++.|+.++.-. +.+.++-+..|..+++.++ .+||.|.+..||.-+..+...-+..-+.++.+
T Consensus 115 -~sRr~--~d~vwvaLAvlGi~lL~p~-~~~~~~lDp~Gv~~Al~AG-~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAav 189 (292)
T COG5006 115 -SSRRL--RDFVWVALAVLGIWLLLPL-GQSVWSLDPVGVALALGAG-ACWALYIVLGQRAGRAEHGTAGVAVGMLVAAL 189 (292)
T ss_pred -hccch--hhHHHHHHHHHHHHhheec-cCCcCcCCHHHHHHHHHHh-HHHHHHHHHcchhcccCCCchHHHHHHHHHHH
Confidence 33443 4455567888999888421 1122233479999999999 99999999999876455544445545556666
Q ss_pred HHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043912 199 VSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVIL 247 (255)
Q Consensus 199 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 247 (255)
+..|.-. ... ...-.+|+-....+-++ .+|...=|.+=+..++...
T Consensus 190 iv~Pig~-~~a-g~~l~~p~ll~laLgva-vlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 190 IVLPIGA-AQA-GPALFSPSLLPLALGVA-VLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHhhhhh-hhc-chhhcChHHHHHHHHHH-HHhcccchHHHHHHHhhCC
Confidence 6543322 111 11112332222222222 3355555666666665544
No 31
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.55 E-value=4e-06 Score=75.02 Aligned_cols=128 Identities=14% Similarity=0.018 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHH-H
Q 043912 12 HLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR-----LQVSWYWYLLLGFVDLQ-G 85 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~-----~~~~~~~~l~~g~~~~~-~ 85 (255)
.|...+-..+++++..+...++..+. .|...+.+.....+..+.++....... ..+.+...+..+++... +
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666665554421 233444555555555555543322111 12345555666776554 4
Q ss_pred HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+.+++.++++.++++++.+..+.|++.+++++++++|+++..+++|..+.+.|+.++
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999999999999999999888
No 32
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.48 E-value=8.8e-06 Score=75.21 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHhhhh-------hhhHHHHHHHHHHH
Q 043912 11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI-LLYRRQRL-------QVSWYWYLLLGFVD 82 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~-~~~~~~~~-------~~~~~~~l~~g~~~ 82 (255)
+.|.++.-..+++++..+...++...+ ...+...+.+...+..+...+. ....+... .......+..++..
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 446677777777777677767666543 3333343444333333332222 22111111 11111222334433
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912 83 LQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 83 ~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
..++.+++.++++.+++.+++...+.|++..++++++++|+++..+++|.++.++|+++..
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3456679999999999999999999999999999999999999999999999999999984
No 33
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.43 E-value=1.1e-05 Score=72.21 Aligned_cols=125 Identities=18% Similarity=0.031 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh---hhh-hhHHHHHHHHHHHHHHHHH
Q 043912 13 LLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ---RLQ-VSWYWYLLLGFVDLQGNFL 88 (255)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~---~~~-~~~~~~l~~g~~~~~~~~~ 88 (255)
|....-+.+++++..+...++..++ . .|..... ......+.+....... ... +.+...+..++....++.+
T Consensus 157 G~~~~l~aa~~~A~~~v~~k~~~~~-~-~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l 231 (295)
T PRK11689 157 SYGLAFIGAFIWAAYCNVTRKYARG-K-NGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA 231 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-C-CchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777777777776543 2 2332211 2222222222122221 112 2233344455444446788
Q ss_pred HHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 89 ANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 89 ~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++.+++++++++++.+.++.|++..++++++++|+++..+++|.++.+.|+.+.
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999999999877
No 34
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.34 E-value=4.7e-05 Score=68.29 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHHHHHHHHHHHHHHHH-HHhh--------hh-hhhHHHHHHH
Q 043912 11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPV--TQSAFSYFTLALVYGGILL-YRRQ--------RL-QVSWYWYLLL 78 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~~~~ll~~~~-~~~~--------~~-~~~~~~~l~~ 78 (255)
..|..+..+.+++++..+...++..++. +.|. .......+.....+..... ...+ .. .+.+...+.+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 3577788888888888888888765432 2222 2222222222221111111 1110 11 1335555667
Q ss_pred HHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 79 GFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 79 g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
|++.... +.+++.+++..++++++.+..+.|++..++++++++|+++..+++|..+.++|+.+.
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 7666654 567889999999999999999999999999999999999999999999999999876
No 35
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.33 E-value=6.2e-06 Score=63.66 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=56.5
Q ss_pred HHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 79 GFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 79 g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++++... ..++..+++..+++.+--+.++.|+++.+++++++|||++++|++|+.+.++|++++
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3344443 567889999999999888888999999999999999999999999999999999988
No 36
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.32 E-value=6.3e-05 Score=60.26 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHHHHHHHHH-Hhhh-------h--------hhhHH
Q 043912 15 SIGQLASLTFAATNFTSSFIANL-----GVDAPVTQSAFSYFTLALVYGGILLY-RRQR-------L--------QVSWY 73 (255)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~P~~~~~~~~~~~~~~ll~~~~~-~~~~-------~--------~~~~~ 73 (255)
...-..+++.+--+...++..++ ....|..+....-...++.+.|.... ++.+ . .+...
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 33444455556666666665554 23345444444444444445554322 1110 1 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHH
Q 043912 74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCV 141 (255)
Q Consensus 74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~l 141 (255)
..+..|++....|...+..+++|++...+++...-.+.+.+++.++++|+++..++.|+.++++|++.
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 44455666677788888999999999999999999999999999999999999999999999999864
No 37
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.29 E-value=8.6e-06 Score=72.39 Aligned_cols=69 Identities=25% Similarity=0.228 Sum_probs=59.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 74 WYLLLGFV-DLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 74 ~~l~~g~~-~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
..+..+.+ ...++.+++.++++.++++++.+.++.|++..+++++++|||++..+++|..+.++|+.++
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 33444433 4456778999999999999999999999999999999999999999999999999999763
No 38
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.24 E-value=4.8e-05 Score=68.17 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 75 YLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 75 ~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
.+..|.....++.+++.++++.+++.++.+.+..|++..++++++++|+++..++.|..+.++|+.++
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33445555566888999999999999999999999999999999999999999999999999888887
No 39
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.22 E-value=3.9e-05 Score=68.77 Aligned_cols=129 Identities=9% Similarity=0.077 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043912 10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQ---SAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGN 86 (255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~---~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 86 (255)
..+|+..+.+.++..+.-....+... ..|... ...-..+.+.++.+...+.++...+..+..++.|++...++
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~ 225 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG----VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGN 225 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC----CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 35699999999888866666655443 233333 22222333333322221112222334445556888876667
Q ss_pred HHHHHHhh-hchHHHHHHHhhhHHHHHHHHHHHHccccCchhhH----HHHHHHHHHHHHh
Q 043912 87 FLANKAYQ-FTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKL----FGAGICMLGLCVC 142 (255)
Q Consensus 87 ~~~~~al~-~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~----~gi~l~~~Gv~li 142 (255)
.++..+.+ +..++.++.+.+..|+...+.+.+++||+.+++|+ +|.++.+.|+.++
T Consensus 226 ~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 226 FFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 78889999 99999999999999999999999999999999999 9999999999887
No 40
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.22 E-value=3.5e-05 Score=69.11 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh-hh-hh----h-----h---HHH-HH
Q 043912 12 HLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR-QR-LQ----V-----S---WYW-YL 76 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~-~~-~~----~-----~---~~~-~l 76 (255)
.|.+...+.+++.+..+...++..++.-..|...+.......++.++|+..... .. .. . . .+. .+
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence 355666666666666555555554311123444445444455555556543211 11 00 0 0 111 11
Q ss_pred HHHHHHH-HHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 77 LLGFVDL-QGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 77 ~~g~~~~-~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
..+.... ..|.+.+.+++.++++++++.....|+++.++++++++|+++..+++|..+.++|+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 2222111 12345667899999999999999999999999999999999999999999999999887
No 41
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.19 E-value=0.00016 Score=63.10 Aligned_cols=129 Identities=26% Similarity=0.292 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-HHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHH-HH
Q 043912 11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSA-FSYFTLALVYGGILLYRR--QRLQVSWYWYLLLGFVDLQ-GN 86 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~ll~~~~~~~--~~~~~~~~~~l~~g~~~~~-~~ 86 (255)
..+...+...++++...+...++.. + ..+..... +..........+...... +...+.+......|++... ++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776666666555 2 12222222 221112222222221111 1223456666777777774 67
Q ss_pred HHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 87 FLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 87 ~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
.+++.+++..+++..+.+..+.|++.+++++++++|+++.+++.|..+.++|+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~ 285 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLA 285 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999887
No 42
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.00 E-value=0.00049 Score=63.35 Aligned_cols=132 Identities=8% Similarity=0.029 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHHHHHHHHH-hhh----h-------hh-hH
Q 043912 11 LHLLSIGQLASLTFAATNFTSSFIANLGV-----DAPVTQSAFSYFTLALVYGGILLYR-RQR----L-------QV-SW 72 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~P~~~~~~~~~~~~~~ll~~~~~~-~~~----~-------~~-~~ 72 (255)
+.|.+.+.+.+++.+.-+...++..++.. ..+...........++.++|+.... .++ . .. .+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 34777777777777777777776654211 1122222222334444455654321 110 0 00 11
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 73 YWYLLLGFVDLQGNF----LANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 73 ~~~l~~g~~~~~~~~----~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+...+.....++ +.+.+++.+++.+.++...+-|+++.++++++++|+++..+++|.++.+.|+.+-
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 111111222222233 3446999999999999999999999999999999999999999999999999876
No 43
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.87 E-value=0.0057 Score=54.26 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH-HHhhhHHHHHHHHHHHHccccCchhhHH----HHHHHHHHHHHhhc
Q 043912 70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVT-LLDGCTIAWALILTRLLLGTRYSPLKLF----GAGICMLGLCVCSS 144 (255)
Q Consensus 70 ~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~-ll~~~~p~~v~ll~~l~l~ek~~~~~~~----gi~l~~~Gv~li~~ 144 (255)
+.+...++.|++...++..++.++++..++++. +=+.+.-+-+.+.+.++++|--+..++. ++++-++|+++...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 456667788888888999999999998888754 4445667778899999999998887765 67777788877753
Q ss_pred ccchhh----hchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043912 145 MFFFQV----FQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSM 206 (255)
Q Consensus 145 ~~~~~~----~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (255)
+...+. .++...|....+++. +.|..|.++.|. .+.|+.+...-|. .|++++......
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~st-igy~~Y~~~~~~--~~~~~~~~~lPqa-iGm~i~a~i~~~ 184 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLIST-IGYWIYSVIPKA--FHVSGWSAFLPQA-IGMLIGAFIFNL 184 (269)
T ss_pred ccccccccccccchhhHHHHHHHHH-HHHHHHHHHHHh--cCCChhHhHHHHH-HHHHHHHHHHhh
Confidence 211111 112356899999999 999999998765 4567887776665 455555444444
No 44
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0037 Score=55.92 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=121.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHH
Q 043912 38 GVDAPVTQSAFSYFTLALVYGGILLYRRQ--RLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALIL 115 (255)
Q Consensus 38 ~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll 115 (255)
-++.|-+..+.+++.+.++=......+++ ..+++++.+-.+++.+....++.+.|++|.+=-...+=-+.=-+=|+++
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm 126 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM 126 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence 35677788888877665542222222222 2367788999999999999999999999987666655555555557899
Q ss_pred HHHHccccCchhhHHHHHHHHHHHHHhh-cccchhh---h-chhhHHHHHHHHhHHHHHHHHHHHHHHhhcC--CCHHHH
Q 043912 116 TRLLLGTRYSPLKLFGAGICMLGLCVCS-SMFFFQV---F-QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKK--NDRVEV 188 (255)
Q Consensus 116 ~~l~l~ek~~~~~~~gi~l~~~Gv~li~-~~~~~~~---~-~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~--~~~~~~ 188 (255)
+.++-|+|++.++.+-..+.-.|+.+-+ .+...+. + .+..+|..++...- ++-++.+.-+++..++ .++.++
T Consensus 127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L-~fDgfTn~tQd~lf~~~k~s~~~m 205 (327)
T KOG1581|consen 127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYL-LFDGFTNATQDSLFKKYKVSSLHM 205 (327)
T ss_pred HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHH-HHHhhHHhHHHHHhccCCccHhHH
Confidence 9999999999999999999999987653 2111111 1 12479999999999 9999999999888875 457888
Q ss_pred HHHHHHHHHHHHHH
Q 043912 189 VCMIGVYGLLVSSI 202 (255)
Q Consensus 189 ~~~~~~~~~~~~~~ 202 (255)
+.-+-++..+.+..
T Consensus 206 M~~vNLf~~i~~~~ 219 (327)
T KOG1581|consen 206 MFGVNLFSAILNGT 219 (327)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888753
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.67 E-value=0.00043 Score=54.84 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=57.7
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHH--HccccCchhhHHHHHHHHHHHHHh
Q 043912 75 YLLLGFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRL--LLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 75 ~l~~g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l--~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
.+..|+..... +.++..+++..+++.+.-+.+..+..+.+.++. ++||++|..|++|+.+.++|++++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv 120 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLI 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45566666554 567999999999999887778888888888885 899999999999999999999998
No 46
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.61 E-value=0.001 Score=59.55 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=107.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHhh----hhhhhHHHHH----HHHHHHHHHHHHHHHHhhhchH
Q 043912 28 NFTSSFIANLGVDAPVTQSAFSYFTLALVY-GGILLYRRQ----RLQVSWYWYL----LLGFVDLQGNFLANKAYQFTSI 98 (255)
Q Consensus 28 ~~~~~~~~~~~~~~P~~~~~~~~~~~~~~l-l~~~~~~~~----~~~~~~~~~l----~~g~~~~~~~~~~~~al~~Ts~ 98 (255)
.+..+...+ +++-|.+.+..-.+.-.+.- +....++++ +.+-+|..++ ..|+.....-.+.+++++|+|.
T Consensus 32 tf~~~~~~~-~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtl 110 (349)
T KOG1443|consen 32 TFYFKWLTK-NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTL 110 (349)
T ss_pred HHHhhhhhc-CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeee
Confidence 344444443 47778777665555333221 111122221 1122343333 4444433334467899999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHH---HHHHHHHHH
Q 043912 99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPC---SMLSFSLQN 175 (255)
Q Consensus 99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~---~~~A~~~v~ 175 (255)
+--++.-+..|+|+.+.+.+|-=||+++.-..-+.+-.+|+.+.... ..+=+..|..++..|+| +=|+....+
T Consensus 111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K----sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~l 186 (349)
T KOG1443|consen 111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK----STQFNIEGFFLVLAASLLSGLRWAFTQML 186 (349)
T ss_pred eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec----ccceeehhHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999988999999999999989999887311 00112568877777651 446665444
Q ss_pred HHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043912 176 LEYFV-KKNDRVEVVCMIGVYGLLVSSIQLSMLELK 210 (255)
Q Consensus 176 ~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 210 (255)
.++.. .+.+|.+.+.-..-+..+...|....+|..
T Consensus 187 l~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 187 LRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred HhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 44332 334566555444444444455667788864
No 47
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.023 Score=51.17 Aligned_cols=125 Identities=13% Similarity=0.075 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhh
Q 043912 71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQV 150 (255)
Q Consensus 71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~ 150 (255)
..++.+...++....-+.-..+++|.++.-.+++-..+|+++++.+..++|.|+++..+.++....+|.... ...|.
T Consensus 76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~---~~~d~ 152 (314)
T KOG1444|consen 76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA---AFTDL 152 (314)
T ss_pred HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh---ccccc
Confidence 345555666665554455668899999999999999999999999999999999999999999999988877 21111
Q ss_pred hchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHH
Q 043912 151 FQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKN--DRVEVVCMIGVYGLLVS 200 (255)
Q Consensus 151 ~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~ 200 (255)
+.+..|-.+++... +.-+.+.+..|+..+.. +..+.+..-.+...+..
T Consensus 153 -sf~~~gY~w~~~n~-~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l 202 (314)
T KOG1444|consen 153 -SFNLRGYSWALANC-LTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPL 202 (314)
T ss_pred -eecchhHHHHHHHH-HHHHHHHHHHHHhhccccccceeEEeehhHHHHHHH
Confidence 22355888999888 99999999999887543 33444444444444433
No 48
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.46 E-value=0.0065 Score=46.70 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 83 LQGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 83 ~~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+++...+++..+++.+ ++-.....+.+.+.+.+++||+++..|++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3345677888998888764 67777888889999999999999999999999999999887
No 49
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0016 Score=49.63 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 84 QGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 84 ~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
..+++...++++.+++.+ ++-.....+-+.+.+++++|||.+..|++|+.+-++|++.+
T Consensus 42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 345678899999988875 78888899999999999999999999999999999999988
No 50
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.30 E-value=0.0023 Score=50.10 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 84 QGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 84 ~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...++...++++.+.+.+ ++..+...+.+.+++.+++||+++..|++|+.+-++|++.+
T Consensus 42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 345677888998888765 56677888899999999999999999999999999999888
No 51
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.22 E-value=0.0037 Score=47.73 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 84 QGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 84 ~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...++...+++..+.+.+ ++-.....+-+.+.+.+++|||++..|++|+.+.++|++.+
T Consensus 41 ~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 41 VSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 345667888988888764 67777888889999999999999999999999999999988
No 52
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.17 E-value=0.0043 Score=47.76 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 85 GNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 85 ~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
..++...+++..+.+.+ ++-.....+.+.+.+++++|||++..|++|+.+-++|++.+
T Consensus 43 sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567788888888765 56677788888999999999999999999999999999998
No 53
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.0044 Score=55.99 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHH
Q 043912 7 TLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQ-VSWYWYLLLGFVDLQG 85 (255)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~g~~~~~~ 85 (255)
+.+.++|+.+.-+.++++..+...-++-..+....+ .|.- - ..++..+ +.|+..+.. ...+
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-----~~~~---~-------~~~~~l~~~~W~~G~~~---~~~g 63 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-----LRAG---S-------GGRSYLRRPLWWIGLLL---MVLG 63 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cccc---c-------hhhHHHhhHHHHHHHHH---Hhcc
Confidence 356677888888877776655554443332211101 0000 0 0001112 234433322 2334
Q ss_pred HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912 86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
+.+.+.|+.+.+++-.+=+.+...++..+++..++|||++++++.|..+++.|..++.
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 5566778999999999988999999999999999999999999999999999998874
No 54
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.95 E-value=0.014 Score=46.53 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=70.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-------c--hHH
Q 043912 157 AIYLSLLGPCSMLSFSLQNLEYFVKK-------NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVK-------W--STD 220 (255)
Q Consensus 157 Gdll~l~sa~~~~A~~~v~~k~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-------~--~~~ 220 (255)
|.++++.|. ++.|+++++.|+..++ .++.+........+.++..+.....|..+..+.. . +..
T Consensus 1 G~~~~l~s~-~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASS-LFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence 678899999 9999999999987544 4688888888989999988888888875422221 1 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912 221 IILGFVGYAVSCFMFYTLATFVLKVILLIDH 251 (255)
Q Consensus 221 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 251 (255)
.....+.-++....++...-..++..|++-|
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~ 110 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTY 110 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHH
Confidence 4555556666777888888888888888765
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.88 E-value=0.098 Score=46.98 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 73 YWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 73 ~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+..++++..+..+.+.-.+.+++...+++..+--+.+.+++.++++++++..+|.|+.+.+.|..+=
T Consensus 226 ~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 226 LYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 4455666777777666556678888989999999999999999999999999999999999999999875
No 56
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.02 Score=49.80 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc---
Q 043912 69 QVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM--- 145 (255)
Q Consensus 69 ~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~--- 145 (255)
+.+-+.+...++....+-...+.+++|.+-....+=-+.-|+=+|+++.++.|++++++|...+++..+|+++-...
T Consensus 82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 34456677777766666666788899987777777778889999999999999999999999999999999987542
Q ss_pred cchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHH
Q 043912 146 FFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSS 201 (255)
Q Consensus 146 ~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~ 201 (255)
.+....++...|+++.++|- .+-+.....+++..+.+. ..+++...-+|..+...
T Consensus 162 v~g~e~~t~g~GElLL~lSL-~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg 218 (337)
T KOG1580|consen 162 VGGAEDKTFGFGELLLILSL-AMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLG 218 (337)
T ss_pred cCCCcccccchHHHHHHHHH-HhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhh
Confidence 22222334578999999999 899998888888766543 34555556667666543
No 57
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.77 E-value=0.024 Score=50.35 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 043912 9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFL 88 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 88 (255)
+.-+++..-.+.++..|.=+.+-+....++.+. +.....-.++.+.++..+. +++..+++-++-++.|++...+|.+
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~-~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~nil~G~~w~ignl~ 211 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAFHVSGWSA-FLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKNILTGLIWGIGNLF 211 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCChhHh-HHHHHHHHHHHHHHHhhcc--cccccccchHHhhHHHHHHHHHHHH
Confidence 344555555555555555555544433333322 1222223233333322211 2223334455667889999999999
Q ss_pred HHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 89 ANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 89 ~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+.+.-.++.+=.+.++.++...+.+.+++|||=+++++.-+. +|++++
T Consensus 212 ~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~---~G~~Li 262 (269)
T PF06800_consen 212 YLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL---IGLILI 262 (269)
T ss_pred HHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH---HHHHHH
Confidence 999999988899989999999999999999999999999886443 444444
No 58
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.60 E-value=0.52 Score=43.46 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccC---c----hhhHHHHHHHHHHHHHh
Q 043912 71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRY---S----PLKLFGAGICMLGLCVC 142 (255)
Q Consensus 71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~---~----~~~~~gi~l~~~Gv~li 142 (255)
.+...++.|.+...++..+..+.++..++.. .+-+.++-+...++..++++|-. + ..-..|+++.++|+++.
T Consensus 72 ~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~ 151 (345)
T PRK13499 72 TLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIV 151 (345)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 3445566778888889999999999888874 46667777788888888887643 2 34567888889999988
Q ss_pred hc----ccchhh---h--chhhHHHHHHHHhHHHHHHHHH
Q 043912 143 SS----MFFFQV---F--QDLYWAIYLSLLGPCSMLSFSL 173 (255)
Q Consensus 143 ~~----~~~~~~---~--~~~~~Gdll~l~sa~~~~A~~~ 173 (255)
.. +...+. . .+...|...+++|. +.|+.|+
T Consensus 152 s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisg-i~~~~f~ 190 (345)
T PRK13499 152 GRAGQLKERKMGIKKAEEFNLKKGLILAVMSG-IFSACFS 190 (345)
T ss_pred HHhhhhcccccccccccccchHhHHHHHHHHH-HHHHHHH
Confidence 54 111100 1 12368999999999 9999999
No 59
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.53 E-value=0.072 Score=46.80 Aligned_cols=119 Identities=13% Similarity=-0.024 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhh--HHHHHHHHHHHHHHH-HHHHHHhhhchH
Q 043912 23 TFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR-QRLQVS--WYWYLLLGFVDLQGN-FLANKAYQFTSI 98 (255)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~--~~~~l~~g~~~~~~~-~~~~~al~~Ts~ 98 (255)
.+|..-.+.++-... .++...-...-...++++.+|+-.-+. ..+... ....+..+++..... .+...+++..+.
T Consensus 158 ~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~ 236 (292)
T COG5006 158 ACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPA 236 (292)
T ss_pred HHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCCh
Confidence 455666666533321 222234445566677777777643222 222211 223345667777664 468999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+.+.++.|.+..+.++++++|++|..||+|+.+.+++..-.
T Consensus 237 ~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 237 RTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999888776543
No 60
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.39 E-value=0.014 Score=43.35 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHH
Q 043912 85 GNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGI 134 (255)
Q Consensus 85 ~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l 134 (255)
..++...+++..+.+.+ .+..+...+.+.+.+.+++||++|..|+.|+.+
T Consensus 42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 34567889999888876 677788999999999999999999999999875
No 61
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.39 E-value=0.23 Score=39.73 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh----hh-hhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q 043912 23 TFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ----RL-QVSWYWYLLLGFVDLQGNFLANKAYQFTS 97 (255)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~----~~-~~~~~~~l~~g~~~~~~~~~~~~al~~Ts 97 (255)
++..-+...+++.+. ...|..-+...+....+++..+....++ .. +.+|| ...-|+++.....+.........
T Consensus 12 ~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG~~~V~~~~~~vp~lG 89 (138)
T PF04657_consen 12 LIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLGVFFVLSNIILVPRLG 89 (138)
T ss_pred HHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHHHHHHHHHHHHhhhhh
Confidence 344444555555543 4458888888888776665444333222 12 23444 44466776665555666677776
Q ss_pred HHHHH-HHhhhHHHHHHHHHHH----HccccCchhhHHHHHHHHHHHHH
Q 043912 98 ITSVT-LLDGCTIAWALILTRL----LLGTRYSPLKLFGAGICMLGLCV 141 (255)
Q Consensus 98 ~~~a~-ll~~~~p~~v~ll~~l----~l~ek~~~~~~~gi~l~~~Gv~l 141 (255)
++++. +...-+-+..+++..+ .-|+|++++|.+|+.+.++|+.+
T Consensus 90 ~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 90 AALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 66643 4444456667888886 57799999999999999999863
No 62
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.49 E-value=0.17 Score=43.16 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=57.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc-c---------------chhhh-------chhh
Q 043912 99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM-F---------------FFQVF-------QDLY 155 (255)
Q Consensus 99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~-~---------------~~~~~-------~~~~ 155 (255)
.......+..++++++.+....+||++..|+++.++...|+..-.-+ . ..+.. .+..
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~ 84 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPV 84 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHH
Confidence 34456677889999999999999999999999999999998753110 0 00010 1124
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 043912 156 WAIYLSLLGPCSMLSFSLQNLEYFVKKND 184 (255)
Q Consensus 156 ~Gdll~l~sa~~~~A~~~v~~k~~~~~~~ 184 (255)
.|..+.+.+. .+-+.-.++.|+..|+.+
T Consensus 85 ~g~~~~l~a~-~~~~~~~~y~e~~~k~~~ 112 (222)
T TIGR00803 85 VGLSAVLSAL-LSSGFAGVYFEKILKDGD 112 (222)
T ss_pred HHHHHHHHHH-HHHhhhHHHHHHcccCCC
Confidence 4544455555 777778888888766544
No 63
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.47 E-value=0.2 Score=42.79 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHH
Q 043912 78 LGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLC 140 (255)
Q Consensus 78 ~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~ 140 (255)
..+....+..+...-+++.+...-++...+.++.+.+++.++++|+++..++.|..+.+.|+.
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 334444445566777899999999999999999999999999999999999999999998864
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.38 E-value=1.4 Score=39.41 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 72 WYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 72 ~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+..+...|.....--.++..|-+..+.+..+++.+..|....+++.++++|+++..|..+-++--+|+++.
T Consensus 211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~ 281 (293)
T COG2962 211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALF 281 (293)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455556555544456788899999999999999999999999999999999999999999999999887
No 65
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.32 E-value=0.39 Score=41.60 Aligned_cols=159 Identities=15% Similarity=0.061 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhc----
Q 043912 77 LLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQ---- 152 (255)
Q Consensus 77 ~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~---- 152 (255)
.++++-..--+..-.+++|-++.--++.-.++++.++....+++|.|.+.......++.+.--+.-. .++++..
T Consensus 73 piSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~--w~D~q~~~~~~ 150 (309)
T COG5070 73 PISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVAT--WGDQQASAFKA 150 (309)
T ss_pred CHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhc--cchhhHHHHHh
Confidence 3444444444445577899999988999999999999999999999999999888776665544431 1111110
Q ss_pred -hhhHHHHHHHHhHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cchHHH-HHHHH
Q 043912 153 -DLYWAIYLSLLGPCSMLSFSLQNLEYFVKK--NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELV--KWSTDI-ILGFV 226 (255)
Q Consensus 153 -~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~-~~~~~ 226 (255)
..+.|-+++.... +.-|.+....|+.++- ....+-+...-+.+.++......++|..+.... +..... ...++
T Consensus 151 ~~lN~GY~Wm~~Nc-lssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~I 229 (309)
T COG5070 151 QILNPGYLWMFTNC-LSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFI 229 (309)
T ss_pred cccCCceEEEehhh-HhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHH
Confidence 1267888898888 9999999998887653 224444554555566666555667776544433 222222 23334
Q ss_pred HHHHHHHHHHHH
Q 043912 227 GYAVSCFMFYTL 238 (255)
Q Consensus 227 ~~~~s~~~~~~~ 238 (255)
.=.++.++.|+.
T Consensus 230 Sgl~svgiSy~s 241 (309)
T COG5070 230 SGLCSVGISYCS 241 (309)
T ss_pred HHHHHhhhhhcc
Confidence 445566665553
No 66
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.32 E-value=0.042 Score=42.50 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-hhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLL-DGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll-~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++...=.++..++..++..+..++.+.+.=+ ++++-+++.+.++++.+|..+++.++|+.+..+|+.+.
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 3444445566777788888999988886644 68888899999998888888999999999999998764
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.07 E-value=0.65 Score=42.66 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHhhh---hhhhH---HHHHHHHHH
Q 043912 9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI-LLYRRQR---LQVSW---YWYLLLGFV 81 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~-~~~~~~~---~~~~~---~~~l~~g~~ 81 (255)
+.++|=++....+++-..+|..--++.++ .+.+-.....- +...++..+. ....++. .+-++ ..++.-+++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~G-lfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLG-LFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHH-HHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 44566667777777777777776666653 22222221111 1111211111 1112221 11111 122222233
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912 82 DLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 82 ~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
.+..+.+.-..++.++++-..+=..++.++.++.+.++.|+++++..++|.++.+.|+++..
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 33334455677888888754333356789999999999999999999999999999998873
No 68
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.98 E-value=0.013 Score=51.90 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH-----HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q 043912 23 TFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILL-----YRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTS 97 (255)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts 97 (255)
.-+..-.+.++.++. ....++..+|...+++...+.. .+.+..+++|+.+..+|.+++.++.+...|+|--.
T Consensus 202 f~asvyIilR~iGk~---~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiEr 278 (346)
T KOG4510|consen 202 FGASVYIILRYIGKN---AHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIER 278 (346)
T ss_pred hhhhHHHHHHHhhcc---ccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHHhhhhc
Confidence 334444445566542 1233444455544444322211 12234567888888899999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 98 ITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 98 ~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++..++..++..++..+...++++|-+|.+.|.|.++.+.-.+..
T Consensus 279 AGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 279 AGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred cCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 999999999999999999999999999999999987766555444
No 69
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.051 Score=48.29 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=69.0
Q ss_pred HHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhh--ch--hhHHHHHHHHhHH
Q 043912 91 KAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVF--QD--LYWAIYLSLLGPC 166 (255)
Q Consensus 91 ~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~--~~--~~~Gdll~l~sa~ 166 (255)
+.++|.+++=-.+=.+++.+|+.+++++++|+|-+..-..+-++.+.|-.+ |.|.. .+ ...|.++.+.|+
T Consensus 121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-----GvdqE~~~~~ls~~GvifGVlaS- 194 (347)
T KOG1442|consen 121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-----GVDQEGSTGTLSWIGVIFGVLAS- 194 (347)
T ss_pred eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-----ccccccccCccchhhhHHHHHHH-
Confidence 335555544322334567788999999999999988766655544444332 22222 12 268999999999
Q ss_pred HHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHH
Q 043912 167 SMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSI 202 (255)
Q Consensus 167 ~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~ 202 (255)
++-|+..+..||.....+ -..+.......+.+...|
T Consensus 195 l~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflp 232 (347)
T KOG1442|consen 195 LAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLP 232 (347)
T ss_pred HHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHH
Confidence 999999999997655433 234555666666665543
No 70
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=94.60 E-value=0.094 Score=39.51 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043912 167 SMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELK 210 (255)
Q Consensus 167 ~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 210 (255)
++||.+.+..|+..++.|+.+.+.+....+.+ ..+.....+..
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 43 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRK 43 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccc
Confidence 46899999999999999999999988888876 54445555543
No 71
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.59 E-value=0.14 Score=46.56 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 76 LLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 76 l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+..+.+....|...+..+..||+-+-++...+=-..+...++++++||.|..+..|.+++++|+.+=
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y 305 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY 305 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence 3444555556777888899999999888877766677888999999999999999999999999876
No 72
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=94.17 E-value=1.2 Score=38.70 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHH
Q 043912 70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119 (255)
Q Consensus 70 ~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~ 119 (255)
++|...+..|++...++.+++.++++.+++.++...++.|++..+++.+.
T Consensus 206 ~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 206 PIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 35666667777766678899999999999999999999999999988764
No 73
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.11 E-value=0.46 Score=44.01 Aligned_cols=134 Identities=20% Similarity=0.172 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--CCChhHHHHH---HHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH
Q 043912 9 RTLHLLSIGQLASLTFAATNFTSSFIAN-L--GVDAPVTQSA---FSYFTLALVYGGILLYRRQRL----QVSWYWYLLL 78 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~P~~~~~---~~~~~~~~~ll~~~~~~~~~~----~~~~~~~l~~ 78 (255)
|.+.|-+++|..|+.-..=.+..++... + ..+.|.+..+ ++.++.+..+.++....+++. +.+.-..++.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 4567788888888888887888875554 3 3455544333 222222222222222222221 2223344566
Q ss_pred HHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 79 GFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 79 g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++++... -++|..|.-.|++..+++=.+.+++..++...++-+++++...++|....++|.+++
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~v 388 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIV 388 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhe
Confidence 6666654 689999999999999998889999999999999999999999999999999999988
No 74
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.93 E-value=0.11 Score=45.31 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHH
Q 043912 70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCV 141 (255)
Q Consensus 70 ~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~l 141 (255)
.-++.+.++++.+..++++.+.-..+-++-.-++++.+--+|+.+.+.++++.+++.+||+|..+.+.|+..
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 346778888999998988887777777777778888889999999999999999999999999999988764
No 75
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=93.81 E-value=0.018 Score=51.07 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhccc-
Q 043912 69 QVSWYWYLLLGFVDLQGNFLANKAYQF-TSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMF- 146 (255)
Q Consensus 69 ~~~~~~~l~~g~~~~~~~~~~~~al~~-Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~- 146 (255)
|.+.+.+...-.+.+..|.+-+.++++ .+..--.++.+-.++-.|+++++.+|+|++.+|+.++++..+|+++..-..
T Consensus 61 kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~ 140 (330)
T KOG1583|consen 61 KIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSS 140 (330)
T ss_pred CCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecC
Confidence 333444444444444455566666766 444444566777888899999999999999999999999999998865211
Q ss_pred --chh------hhc---hh---hHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHH
Q 043912 147 --FFQ------VFQ---DL---YWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVC 190 (255)
Q Consensus 147 --~~~------~~~---~~---~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~ 190 (255)
+.+ .++ |. ..|..+...+. +.-|.-.+++|..-++++ +-|.+.
T Consensus 141 ~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al-~~sa~mgiyqE~~Y~kyGKh~~EalF 199 (330)
T KOG1583|consen 141 KDGRSKLSGLDSGSAQSDFFWWLIGIALLVFAL-LLSAYMGIYQETTYQKYGKHWKEALF 199 (330)
T ss_pred cchhhhhcccccCcccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 111 111 11 56887777777 777777788887666553 455443
No 76
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.52 E-value=7.5 Score=35.76 Aligned_cols=163 Identities=12% Similarity=0.221 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHHHHHHHH----------hhhhhhhHHHHHH
Q 043912 9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVT-QSAFSYFTLALVYGGILLYR----------RQRLQVSWYWYLL 77 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~~~~~~~~ll~~~~~~----------~~~~~~~~~~~l~ 77 (255)
.+..++.+.-+-+++-.+......+..+..+|.-+. +..+. -+..|+..-. ++.......+..+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~s-----wli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l 78 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFS-----WLIVPWLWALLAIPDFFSIYSATPASTLFWTFL 78 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHH-----HHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHH
Confidence 345566666666655555555555555444443321 22222 2233333110 0111233455566
Q ss_pred HHHHHHHHHHHHHHHhhhchHHH-HHHHhhhHHHHHHHHHHHHcc-------ccCchhhHHHHHHHHHHHHHhhcc--cc
Q 043912 78 LGFVDLQGNFLANKAYQFTSITS-VTLLDGCTIAWALILTRLLLG-------TRYSPLKLFGAGICMLGLCVCSSM--FF 147 (255)
Q Consensus 78 ~g~~~~~~~~~~~~al~~Ts~~~-a~ll~~~~p~~v~ll~~l~l~-------ek~~~~~~~gi~l~~~Gv~li~~~--~~ 147 (255)
.|++...+...+=.+.+|..++- .++...++..+=.++-.++.+ ++-....++|++++++|+.++... ..
T Consensus 79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 77777777666667777766654 334444444444444344332 333557899999999999998421 00
Q ss_pred h-h---hhch--hhHHHHHHHHhHHHHHHHHHHHHH
Q 043912 148 F-Q---VFQD--LYWAIYLSLLGPCSMLSFSLQNLE 177 (255)
Q Consensus 148 ~-~---~~~~--~~~Gdll~l~sa~~~~A~~~v~~k 177 (255)
. + ..+| .-.|.+.++.|+ ++=|..+.-.+
T Consensus 159 e~~~~~~~~efn~~kGl~iAv~sG-v~Sa~fn~g~~ 193 (344)
T PF06379_consen 159 EKELGEEAKEFNFKKGLIIAVLSG-VMSACFNFGLD 193 (344)
T ss_pred hhhhccchhhhhhhhhHHHHHHHH-HHHHHHHHHHH
Confidence 0 0 0111 257999999988 88777776544
No 77
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.71 E-value=6.2 Score=32.04 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h----hhhhHHHHHHHHHHHHHHHH
Q 043912 14 LSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R----LQVSWYWYLLLGFVDLQGNF 87 (255)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~----~~~~~~~~l~~g~~~~~~~~ 87 (255)
++.+-..-.+...-+.+-+.+.+. .+.|..-+...+..-..++..+.+.+++ . -+.+|| ...-|.++..--+
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~-~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW-~~~GG~lGa~~vt 84 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARY-LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWW-AWIGGLLGAIFVT 84 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchH-HHHccchhhhhhh
Confidence 334444444555566666666653 5678888888988766665444433322 1 122344 3434444432222
Q ss_pred HHHHHhhh-chHHHHHHHhhhHHHHHHHHHHHHcc----ccCchhhHHHHHHHHHHHHHh
Q 043912 88 LANKAYQF-TSITSVTLLDGCTIAWALILTRLLLG----TRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 88 ~~~~al~~-Ts~~~a~ll~~~~p~~v~ll~~l~l~----ek~~~~~~~gi~l~~~Gv~li 142 (255)
........ -.+....++.+-.-+..+++..+=+. ++++..++.|+++.++|+.++
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 22222222 33334556666677777777776444 899999999999999995554
No 78
>PRK02237 hypothetical protein; Provisional
Probab=91.15 E-value=5.6 Score=30.43 Aligned_cols=37 Identities=30% Similarity=0.540 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 106 GCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 106 ~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+....+-.+.+-|+|+++..++|..+|++|+.+|
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 3344455667889999999999999999999999988
No 79
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.12 E-value=0.22 Score=45.18 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912 85 GNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 85 ~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
|...-+.|+.+.+++-.+=+-++..+...+++..++|||++..-.+|..+|++|-.++.
T Consensus 77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 34444556778888888888888889999999999999999999999999999999884
No 80
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=89.47 E-value=5.5 Score=30.38 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 106 GCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 106 ~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+....+-.+.+-|+|+++..++|..+|++|+.++
T Consensus 65 GvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 65 GVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred hhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 3445556677889999999999999999999999998
No 81
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=88.41 E-value=1.2 Score=39.86 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=88.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc
Q 043912 66 QRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM 145 (255)
Q Consensus 66 ~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~ 145 (255)
++...+|+-+..++++......+.+-++.|-+--..-+.-++-.+=|++.+.++-++|+...+..+..+...|+++-.
T Consensus 100 k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FT-- 177 (367)
T KOG1582|consen 100 KRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFT-- 177 (367)
T ss_pred cceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhh--
Confidence 344456777888887766555555556666544444555565555578999999999999999999999999998862
Q ss_pred cchhhh-ch--hhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHH
Q 043912 146 FFFQVF-QD--LYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSIQLS 205 (255)
Q Consensus 146 ~~~~~~-~~--~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 205 (255)
-+|.. +. +..|..+.=+|- ++-|+--.++||..+.++ ..+++......|.+....+..
T Consensus 178 -LADs~~sPNF~~~Gv~mIsgAL-l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mv 240 (367)
T KOG1582|consen 178 -LADSQTSPNFNLIGVMMISGAL-LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMV 240 (367)
T ss_pred -hcccccCCCcceeeHHHHHHHH-HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHH
Confidence 12221 11 257877777777 778876666776666543 455554444455555444433
No 82
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=12 Score=28.38 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 108 TIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 108 ~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
.+....+-.++.-|.|+++..+.|..+|++|+.+|
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi 102 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI 102 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee
Confidence 34445555678889999999999999999998887
No 83
>PRK13499 rhamnose-proton symporter; Provisional
Probab=83.35 E-value=38 Score=31.33 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHH----HHHHHhhhHHHHHHHHHHHHccccCc------hhhHHHHHHHHHHHHHh
Q 043912 76 LLLGFVDLQGNFLANKAYQFTSIT----SVTLLDGCTIAWALILTRLLLGTRYS------PLKLFGAGICMLGLCVC 142 (255)
Q Consensus 76 l~~g~~~~~~~~~~~~al~~Ts~~----~a~ll~~~~p~~v~ll~~l~l~ek~~------~~~~~gi~l~~~Gv~li 142 (255)
.+.|.+...++.+...|-+...++ +-.+-++++.++..+-+. ++||+=+ +.-+.|+++-+.|..++
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~li 339 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIV 339 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHH
Confidence 455566666666665655544332 223555777777777777 5999877 44567777777777776
No 84
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=82.79 E-value=20 Score=32.62 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
-++..++.+.++..++.+.+.-++.=.+-..+.++.+==++.++++.+..+.+++..||.|+.+.+.|+.+=
T Consensus 240 ~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 240 VAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE 311 (327)
T ss_pred HHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence 356778889999888776555555433333344555667788999999999999999999999999998763
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=72.81 E-value=1.1 Score=39.53 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHH
Q 043912 67 RLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAG 133 (255)
Q Consensus 67 ~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~ 133 (255)
+.+|.-+.-++.|+....+|.....+-+...++.+=-+.++..+...+-+.++||||=|++++..+.
T Consensus 204 ~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 204 RFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred chHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence 3445555667889999999988777777666666556677888888899999999999999987553
No 86
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=71.07 E-value=4.8 Score=30.64 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=25.5
Q ss_pred HHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 113 LILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 113 ~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+.+++||++++.+..|-++-.+++.++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456788999999999999998888777665
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.11 E-value=13 Score=33.73 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+-+++++..+++..+..+.++++..++.-..+-.-+.+...++.+++.++....|+.++++|-++=
T Consensus 230 ~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 230 VMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 445556777777777777788888877666665666666777777788888888888888888776554
No 88
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.97 E-value=15 Score=27.67 Aligned_cols=30 Identities=7% Similarity=-0.035 Sum_probs=26.8
Q ss_pred HHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 113 LILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 113 ~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
...+.+++||++++.++.|..+-..|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999988887
No 89
>COG2510 Predicted membrane protein [Function unknown]
Probab=64.17 E-value=72 Score=25.41 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=31.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 043912 158 IYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSS 201 (255)
Q Consensus 158 dll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~ 201 (255)
.+++++|| +++++..++.|--.++.||..-+..-......++.
T Consensus 5 ~~~ALLsA-~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~ 47 (140)
T COG2510 5 IIYALLSA-LFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLL 47 (140)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHH
Confidence 67899999 99999999998777778876555544444444443
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=63.60 E-value=1e+02 Score=26.86 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-hhhhh-----hhHHHHHHH-HHHH
Q 043912 10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYR-RQRLQ-----VSWYWYLLL-GFVD 82 (255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~-~~~~~-----~~~~~~l~~-g~~~ 82 (255)
...|+..--..+++-...+...-+.-+++..+.+.++...+..-.++-+.....+ +++.+ +.+-..... -+..
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 3444444444444444444444455554433445666666554333322222222 22111 111111111 1222
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHH
Q 043912 83 LQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGI 134 (255)
Q Consensus 83 ~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l 134 (255)
..+-.....-++|.+.-.=.+-.+...+.+.+++..+++.+++....+|..+
T Consensus 192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 2222333445777766666677788888999999999999999999888653
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=61.97 E-value=1.2 Score=39.10 Aligned_cols=183 Identities=13% Similarity=0.140 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q 043912 14 LSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQ-VSWYWYLLLGFVDLQGNFLANKA 92 (255)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~a 92 (255)
++++.+=++.+-.-.+++.|+.. .|.-++.=..+-+.+.-+...+..++... +.+...++-|.+...++..++.|
T Consensus 4 ~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka 79 (288)
T COG4975 4 LLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA 79 (288)
T ss_pred HHHHHHHHHHhcccceeeeecCC----ChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence 34444555555555555556654 34444332222111111111122333322 22334455566667778888999
Q ss_pred hhhchHHHHH-HHhhhHHHHHHHHHHHHccccCchhhHH----HHHHHHHHHHHhhcccc--hhhhch--hhHHHHHHHH
Q 043912 93 YQFTSITSVT-LLDGCTIAWALILTRLLLGTRYSPLKLF----GAGICMLGLCVCSSMFF--FQVFQD--LYWAIYLSLL 163 (255)
Q Consensus 93 l~~Ts~~~a~-ll~~~~p~~v~ll~~l~l~ek~~~~~~~----gi~l~~~Gv~li~~~~~--~~~~~~--~~~Gdll~l~ 163 (255)
.++..++++. +=+.+.-+-+.+.+.+.++|-.+..|.+ ++++-+.|+++-+.+.. .+.++. ...|....+.
T Consensus 80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i 159 (288)
T COG4975 80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI 159 (288)
T ss_pred eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence 9999998865 3344555667888999999998887764 22333334433321110 111111 2468888888
Q ss_pred hHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 043912 164 GPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQL 204 (255)
Q Consensus 164 sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (255)
|. +.|-.|.+..+.. +.|..+..--|. .|++++....
T Consensus 160 St-~GYv~yvvl~~~f--~v~g~saiLPqA-iGMv~~ali~ 196 (288)
T COG4975 160 ST-LGYVGYVVLFQLF--DVDGLSAILPQA-IGMVIGALIL 196 (288)
T ss_pred ec-cceeeeEeeeccc--cccchhhhhHHH-HHHHHHHHHH
Confidence 99 9999999877643 345444444444 4555554333
No 92
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=61.86 E-value=15 Score=28.09 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHH-HHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 74 WYLLLGFVDLQGNFLANKAYQFTSITSVT-LLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~-ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
.|.+.=.++..++.+++.-++.++.+.+. +-++++..|+.+.+...-.|...++.++|..+..+|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34444455666777777778877776543 4556677788888888666667777888999998888765
No 93
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=52.31 E-value=1.6e+02 Score=25.71 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHccccCchhhHHHHHHHHHHHHHhhcccchhh-hchhhHHHHHHHHhHHHHHHHHHHHHHHh-hcCCCHHHHHH
Q 043912 118 LLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQV-FQDLYWAIYLSLLGPCSMLSFSLQNLEYF-VKKNDRVEVVC 190 (255)
Q Consensus 118 l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~Gdll~l~sa~~~~A~~~v~~k~~-~~~~~~~~~~~ 190 (255)
.-+++|.+-...-|...+...+.++.+-. ... ..+...-...+.++| +.+..|.++--+. .++.+|-|.+.
T Consensus 157 ~t~qtK~DFt~~~~~l~~~l~vl~~~g~I-~~~f~~~~~~~~vya~lgA-llf~~yl~~Dtqllm~~~SPEEYI~ 229 (237)
T KOG2322|consen 157 FTLQTKYDFTSLGGFLFALLIVLLLFGLI-FLFFPYGPILVMVYAALGA-LLFCGYLVYDTQLLMGRISPEEYIF 229 (237)
T ss_pred EEEeeccchhhhhhHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHH-HHHhHHHHhhhHHHhccCCHHHHHH
Confidence 44677877777777777776666662100 001 123456678888899 8999888765533 46777777653
No 94
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=46.53 E-value=40 Score=29.53 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHH
Q 043912 74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICM 136 (255)
Q Consensus 74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~ 136 (255)
...+-|.+.+...++..+..+-|+.+.-+++-+++-.-..+-+.+++.|+.+..++.++.+++
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGf 288 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGF 288 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHH
Confidence 344556666656666667777787777777777776666777788888888887777776665
No 95
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=41.88 E-value=1.7e+02 Score=23.26 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHH
Q 043912 6 VTLRTLHLLSIGQLASLT-FAATNFTSSFIA-NLGVDAPVTQSAFSYFTLALVYGGIL 61 (255)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~P~~~~~~~~~~~~~~ll~~~ 61 (255)
||+++-+-+..-.+..++ +....+..+.+. ....+.-......+-.+.+.+..|..
T Consensus 80 r~~~~P~~~I~~ll~~v~~~~l~~~~~~~~~~~~~~d~~~i~~l~~~li~a~IwipYf 137 (149)
T PF10754_consen 80 RKRRFPKLYIIWLLISVLFIALDAFAFSYIFPSPVIDAEAIRELLRSLIAAAIWIPYF 137 (149)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444444444444 444444443333 11122223455666666666677775
No 96
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=41.29 E-value=28 Score=31.40 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=37.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 100 SVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 100 ~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+.++...+==++..+++.+.++.++++.+|+|..+.+.|-.+-
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLF 312 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3566666667788999999999999999999999999999876
No 97
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=41.18 E-value=2e+02 Score=26.02 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=37.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 97 SITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 97 s~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
.+..++.++..--..+.+++++++.+++|-....|..+.+.|+++-
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln 330 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLN 330 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhh
Confidence 3444444554455678899999999999999999999999999987
No 98
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=40.14 E-value=2.9e+02 Score=25.16 Aligned_cols=23 Identities=9% Similarity=-0.207 Sum_probs=15.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHh
Q 043912 120 LGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 120 l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+-||.++++.+-....+.++..+
T Consensus 78 l~Dr~grr~~~~~~~~~~~~~~~ 100 (394)
T PRK10213 78 TIQATDRRYVVILFAVLLTLSCL 100 (394)
T ss_pred HhcccCcHHHHHHHHHHHHHHHH
Confidence 34888888887666666655444
No 99
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.63 E-value=59 Score=26.34 Aligned_cols=28 Identities=25% Similarity=0.057 Sum_probs=20.5
Q ss_pred HhhhchHHHHHHHhhhHHHHHHHHHHHH
Q 043912 92 AYQFTSITSVTLLDGCTIAWALILTRLL 119 (255)
Q Consensus 92 al~~Ts~~~a~ll~~~~p~~v~ll~~l~ 119 (255)
++...+..+++++.|..|++.++++..+
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778999999999877766443
No 100
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.01 E-value=59 Score=26.29 Aligned_cols=29 Identities=21% Similarity=0.060 Sum_probs=22.2
Q ss_pred HHhhhchHHHHHHHhhhHHHHHHHHHHHH
Q 043912 91 KAYQFTSITSVTLLDGCTIAWALILTRLL 119 (255)
Q Consensus 91 ~al~~Ts~~~a~ll~~~~p~~v~ll~~l~ 119 (255)
+++..-+.-.++++.++.|++.++++.+.
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778999999999988877664
No 101
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.64 E-value=51 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=17.0
Q ss_pred hhchHHHHHHHhhhHHHHHHHHHHH
Q 043912 94 QFTSITSVTLLDGCTIAWALILTRL 118 (255)
Q Consensus 94 ~~Ts~~~a~ll~~~~p~~v~ll~~l 118 (255)
...+...++++.+..|+..++++.+
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAV 87 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556788888888877665544
No 102
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=33.53 E-value=1.7e+02 Score=21.63 Aligned_cols=55 Identities=15% Similarity=0.028 Sum_probs=29.0
Q ss_pred HHHccccCchhhHHHHHHH------HHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 043912 117 RLLLGTRYSPLKLFGAGIC------MLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYF 179 (255)
Q Consensus 117 ~l~l~ek~~~~~~~gi~l~------~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~ 179 (255)
.+--+|++|+|..+|=.+- .+|.+++ ...|...=.+..+.|+ +.=+.|..++...
T Consensus 23 ~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li-------~~Pdl~plAv~Glgsa-lGI~G~q~vE~~l 83 (89)
T PF04550_consen 23 VLASNEPITLRLFIGRVILGSAVSVVAGAALI-------QFPDLPPLAVIGLGSA-LGIAGYQAVEAWL 83 (89)
T ss_pred HHccCCCCchhHHhHHHHHhhHHHHHHHHHHh-------cCCCCCHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 3445688888877765443 2444444 2233223344455566 6555666555433
No 103
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=33.39 E-value=5.5e+02 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=33.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+++.++..++|+=.+.++...+.+|.+...+.+.+-.++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 56788899999988888888877776556666666667777666
No 104
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=31.40 E-value=51 Score=19.63 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHccccCchhh
Q 043912 109 IAWALILTRLLLGTRYSPLK 128 (255)
Q Consensus 109 p~~v~ll~~l~l~ek~~~~~ 128 (255)
-+.-.++..+++|||+++.+
T Consensus 13 ~iYgiiiT~L~~R~K~~~~~ 32 (33)
T PF11628_consen 13 FIYGIIITALYCREKFSKSK 32 (33)
T ss_dssp HHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 34456677788899887654
No 105
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=30.53 E-value=2e+02 Score=28.06 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHH--HHHHHHHHHHHHHHHHHHHhh-ccccccccchHHHHHHHHHHHHHH
Q 043912 156 WAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVE--VVCMIGVYGLLVSSIQLSMLE-LKSLELVKWSTDIILGFVGYAVSC 232 (255)
Q Consensus 156 ~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~s~ 232 (255)
.+-+|--+ |++||+|+++-.+..+=||.+. .....-.+|.+.+.|+.++.- ..++.+++|..--.=++-.++==.
T Consensus 440 Ls~~L~PL--~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDl 517 (592)
T KOG2489|consen 440 LSYLLFPL--LVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDL 517 (592)
T ss_pred HHHHHHHH--HHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 44444433 3689999987554333355332 235566688888888876643 256777888766555666666677
Q ss_pred HHHHHHHHHHHHH
Q 043912 233 FMFYTLATFVLKV 245 (255)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (255)
++|=+=||..=|.
T Consensus 518 FAFVIkMPt~hRl 530 (592)
T KOG2489|consen 518 FAFVIKMPTLHRL 530 (592)
T ss_pred HHHHhhhhhhhhh
Confidence 7777777766543
No 106
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=29.87 E-value=6.7e+02 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043912 221 IILGFVGYAVSCFMFYTLATFVLKV 245 (255)
Q Consensus 221 ~~~~~~~~~~s~~~~~~~~~~~~~~ 245 (255)
......+..+|.+.--++.|....+
T Consensus 464 ~~~~~~~l~~S~~~al~~~P~l~~~ 488 (1025)
T PRK10614 464 AVTLSVAIGISLLVSLTLTPMMCAW 488 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777766544
No 107
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=29.62 E-value=2.8e+02 Score=21.81 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043912 158 IYLSLLGPCSMLSFSLQNLEYFVKKND-RVEVVCMIGVYGLLVSSIQLSMLELK 210 (255)
Q Consensus 158 dll~l~sa~~~~A~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~ 210 (255)
.++++.++ ..-+.+..+..+..++.+ |..-.......|.+.........++.
T Consensus 3 ~lla~~aG-~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~ 55 (138)
T PF04657_consen 3 ILLALLAG-ALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP 55 (138)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46777888 888888888887776654 77666666666777666555555543
No 108
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=28.07 E-value=4.8e+02 Score=24.02 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=36.9
Q ss_pred hhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 93 YQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 93 l~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+..|+.-..++..---=+-+.+++...++|+++...|.|..++..|+..=
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 44455544443333333456788999999999999999999999999876
No 109
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.99 E-value=1.2e+02 Score=23.43 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=19.5
Q ss_pred cccCchhhHHHHHHHHHHHHHhh
Q 043912 121 GTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 121 ~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
+.|+++.+-.|..+.++|+.++.
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy 27 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMY 27 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 36788899999999999998874
No 110
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=53 Score=29.64 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh--hh------h-hhh-HHHHHHHHH
Q 043912 11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR--QR------L-QVS-WYWYLLLGF 80 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~--~~------~-~~~-~~~~l~~g~ 80 (255)
++|..+|-..++..+--+.-..+.....-+--+-+++.+-+.+.++.+|....-. ++ . ... |....+-|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 4677777766666554333333222111112245566666666666667654321 11 1 112 233445567
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHH
Q 043912 81 VDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGL 139 (255)
Q Consensus 81 ~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv 139 (255)
+++..++...+-.+-||+-.-.+=...-..-=.+++..+.+|.-+...|-+..+.+.|-
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs 322 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGS 322 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehh
Confidence 77766665545566666642110000011112355677777777766666555444443
No 111
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=22.46 E-value=6e+02 Score=23.22 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=39.2
Q ss_pred hhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 94 QFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 94 ~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
++.|+++=.++.+.-....=+++.....|+++..|+.|.++-..|..+-
T Consensus 284 k~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 284 KELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778877766655566777778999999999999999998876
Done!