Query 043912
Match_columns 255
No_of_seqs 139 out of 1496
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 3.9E-06 1.3E-10 63.5 9.5 66 77-142 34-101 (110)
2 2i68_A Protein EMRE; transmemb 98.2 2.3E-06 7.8E-11 67.4 6.5 67 77-143 34-102 (137)
3 2hac_A T-cell surface glycopro 24.5 43 0.0015 19.1 1.8 19 109-127 13-31 (33)
4 3b9w_A Ammonium transporter fa 8.4 1E+03 0.036 21.1 17.1 81 114-199 224-310 (407)
5 3arc_C Photosystem II core lig 7.8 4.3E+02 0.015 24.0 4.6 44 1-44 17-64 (455)
6 2i68_A Protein EMRE; transmemb 7.2 7.3E+02 0.025 18.3 9.1 18 167-184 38-55 (137)
7 3arc_T Photosystem II reaction 7.1 2.7E+02 0.0094 15.6 1.9 14 114-127 17-30 (32)
8 3arc_B Photosystem II core lig 6.5 6.1E+02 0.021 23.3 4.9 41 1-41 4-48 (504)
9 1rh5_C Secbeta; protein transl 6.4 4.2E+02 0.014 16.5 2.8 21 122-142 26-46 (53)
10 3gia_A Uncharacterized protein 6.0 1.2E+03 0.041 19.7 10.2 20 111-130 356-375 (444)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.31 E-value=3.9e-06 Score=63.53 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=57.2
Q ss_pred HHHHHHHH-HHHHHHHHhhhchHHHHHHH-hhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 77 LLGFVDLQ-GNFLANKAYQFTSITSVTLL-DGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 77 ~~g~~~~~-~~~~~~~al~~Ts~~~a~ll-~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
..+..... .++++..++++.+++.+.-+ .++.|+++.+++++++|||+++.|++|+.+.++|++.+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l 101 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444443 45678889999999998666 89999999999999999999999999999999999998
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=2.3e-06 Score=67.43 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=47.5
Q ss_pred HHHHHHHH-HHHHHHHHhhhchHHHHHHH-hhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912 77 LLGFVDLQ-GNFLANKAYQFTSITSVTLL-DGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS 143 (255)
Q Consensus 77 ~~g~~~~~-~~~~~~~al~~Ts~~~a~ll-~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~ 143 (255)
+++++... .++++..+++..+++.+.-+ .++.|++++++++++++|+++..|++|+++.++|++++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34444444 46678999999999988777 899999999999999999999999999999999999983
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=24.51 E-value=43 Score=19.09 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHccccCchh
Q 043912 109 IAWALILTRLLLGTRYSPL 127 (255)
Q Consensus 109 p~~v~ll~~l~l~ek~~~~ 127 (255)
-+.-.++..++.|||+++.
T Consensus 13 ~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 13 FIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3445667778888888764
No 4
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=8.37 E-value=1e+03 Score=21.12 Aligned_cols=81 Identities=19% Similarity=0.115 Sum_probs=35.3
Q ss_pred HHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHH---HHhhcCCCHHHHHH
Q 043912 114 ILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL---EYFVKKNDRVEVVC 190 (255)
Q Consensus 114 ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~---k~~~~~~~~~~~~~ 190 (255)
+++++..++|++.....- =+++|++-+... .+ ..+..-..+..++++.+++..+..+. |+..|-.|+++...
T Consensus 224 ~~~~~~~~gK~~~~~~~n--G~LAGLVAITa~--~~-~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~ 298 (407)
T 3b9w_A 224 FLSALFHKGKASIVDMAN--AALAGGVAIGSV--CN-IVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHN 298 (407)
T ss_dssp HHHHHHTTTCCCHHHHHH--HTTHHHHHHTTT--TT-TSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHH
T ss_pred HHHHHHhCCCCCHHHHHH--hhhhhhheeccC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCee
Confidence 344444556666544432 245777777311 11 11222233444455524444443332 22233345565554
Q ss_pred ---HHHHHHHHH
Q 043912 191 ---MIGVYGLLV 199 (255)
Q Consensus 191 ---~~~~~~~~~ 199 (255)
.-+++|.+.
T Consensus 299 vHgv~Gi~G~l~ 310 (407)
T 3b9w_A 299 LHGLPGLLGGFS 310 (407)
T ss_dssp HTTHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 344455444
No 5
>3arc_C Photosystem II core light harvesting protein CP43; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_C* 1s5l_C* 1w5c_C* 2axt_C* 3bz2_C* 3prq_C* 3kzi_C* 3prr_C* 3a0b_C* 3a0h_C* 1izl_C*
Probab=7.83 E-value=4.3e+02 Score=23.98 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=32.5
Q ss_pred CccccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 043912 1 WWRGHVTLR----TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVT 44 (255)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 44 (255)
||+++..-- .+++-=+.|..-+++|++++..-.+...+-+.|+.
T Consensus 17 WwaGNar~in~SGrlLgAHvaHagLI~fWAGamTLfEla~fdPs~PM~ 64 (455)
T 3arc_C 17 WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMY 64 (455)
T ss_dssp GGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCGG
T ss_pred ceeeeeEEecCCCchHHHHHHHHHHHHHhhccceeeeeeccCCCCChh
Confidence 888875422 45666678889999999999988888755566654
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=7.16 E-value=7.3e+02 Score=18.28 Aligned_cols=18 Identities=11% Similarity=-0.191 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 043912 167 SMLSFSLQNLEYFVKKND 184 (255)
Q Consensus 167 ~~~A~~~v~~k~~~~~~~ 184 (255)
++++++..+.-+..++.|
T Consensus 38 ~~~~ls~~l~~~alk~i~ 55 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIP 55 (137)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 444444444444445544
No 7
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.12 E-value=2.7e+02 Score=15.62 Aligned_cols=14 Identities=0% Similarity=-0.050 Sum_probs=9.8
Q ss_pred HHHHHHccccCchh
Q 043912 114 ILTRLLLGTRYSPL 127 (255)
Q Consensus 114 ll~~l~l~ek~~~~ 127 (255)
+.-.+++||+++..
T Consensus 17 iFFAI~FRePPri~ 30 (32)
T 3arc_T 17 FFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHTSCCCCCC
T ss_pred HHHhhhhcCCCCCC
Confidence 44567789998754
No 8
>3arc_B Photosystem II core light harvesting protein CP47; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Probab=6.49 E-value=6.1e+02 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=31.2
Q ss_pred CccccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 043912 1 WWRGHVTLR----TLHLLSIGQLASLTFAATNFTSSFIANLGVDA 41 (255)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (255)
|||+|..-- .+++-=+.|..-+++|++++..-.+....-+.
T Consensus 4 WwaGNarviN~SGrlLgAHvaHagLI~fWAGamTLfEla~fdPs~ 48 (504)
T 3arc_B 4 WYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSD 48 (504)
T ss_dssp GGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ceeeeEEEecCCCchHHHHHHHHHHHHHHhhhhhhhhhhcccCCc
Confidence 888875432 55666778889999999999998888755555
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=6.43 E-value=4.2e+02 Score=16.51 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=17.6
Q ss_pred ccCchhhHHHHHHHHHHHHHh
Q 043912 122 TRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 122 ek~~~~~~~gi~l~~~Gv~li 142 (255)
=|++++..+++.+++...+++
T Consensus 26 iKi~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 26 IRVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCeehhhhHHHHHHHHHH
Confidence 378899999999988888776
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=6.04 E-value=1.2e+03 Score=19.75 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=10.3
Q ss_pred HHHHHHHHHccccCchhhHH
Q 043912 111 WALILTRLLLGTRYSPLKLF 130 (255)
Q Consensus 111 ~v~ll~~l~l~ek~~~~~~~ 130 (255)
....++.+.+|+|...+++.
T Consensus 356 ~~~~~~~~~~r~~~~~~~~~ 375 (444)
T 3gia_A 356 LFVILSHYILIDEVGGRKEI 375 (444)
T ss_dssp HHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHhhhcCCCcchH
Confidence 33445566666554444443
Done!