Query 043912
Match_columns 255
No_of_seqs 139 out of 1496
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 16:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043912.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043912hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.0 40 0.0029 16.6 2.5 19 156-175 3-21 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 18.4 2.3E+02 0.017 22.9 20.9 81 107-194 237-318 (383)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.3 3.3E+02 0.024 20.5 7.9 65 74-142 4-68 (248)
4 d2axtc1 f.55.1.1 (C:27-473) Ph 7.5 1.7E+02 0.013 24.5 4.0 45 1-45 9-57 (447)
5 d2axtb1 f.55.1.1 (B:2-489) Pho 4.6 3.1E+02 0.023 23.1 4.0 45 1-45 4-56 (488)
6 d1ak2a2 g.41.2.1 (A:147-176) M 4.4 65 0.0048 16.5 -0.4 9 246-254 3-11 (30)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 3.1 3.5E+02 0.026 13.1 3.6 14 113-126 16-29 (30)
8 d1rh5c_ f.23.29.1 (C:) Sec-bet 2.6 4.3E+02 0.031 12.9 1.9 17 121-137 5-21 (32)
9 d1wlpb1 b.34.2.1 (B:229-281) p 2.3 1.1E+02 0.0084 17.2 -0.9 9 1-9 35-43 (53)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 2.1 5.6E+02 0.041 13.2 2.6 16 156-172 19-34 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.02 E-value=40 Score=16.60 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 043912 156 WAIYLSLLGPCSMLSFSLQN 175 (255)
Q Consensus 156 ~Gdll~l~sa~~~~A~~~v~ 175 (255)
.|.+.+-+++ ++||.|..+
T Consensus 3 lgli~~tl~g-lf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGG-LFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHH-HHHHHHHHT
T ss_pred eeehHHHHHH-HHHHHHHHh
Confidence 5777788899 999998765
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=18.42 E-value=2.3e+02 Score=22.94 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHH-HHHHHHhHHHHHHHHHHHHHHhhcCCCH
Q 043912 107 CTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWA-IYLSLLGPCSMLSFSLQNLEYFVKKNDR 185 (255)
Q Consensus 107 ~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~G-dll~l~sa~~~~A~~~v~~k~~~~~~~~ 185 (255)
..-..+.++...+.++|.+.....-- +++|++-+.. +.+. - +.++ .+...+++.+++-.+..+.||. |-.|+
T Consensus 237 a~~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita--~~~~-v-~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~ 309 (383)
T d1u7ga_ 237 AAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTP--ACGY-I-GVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDP 309 (383)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTT--TTTT-S-CHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCG
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhccc--Cccc-c-chhhHHHHHhhccHHHHHHHHHHHhhc-ccccc
Confidence 33334444444456778877665532 3557777721 1111 1 1233 3444444425555556554443 44566
Q ss_pred HHHHHHHHH
Q 043912 186 VEVVCMIGV 194 (255)
Q Consensus 186 ~~~~~~~~~ 194 (255)
.+....-+.
T Consensus 310 ~~~~~vHg~ 318 (383)
T d1u7ga_ 310 CDVFGVHGV 318 (383)
T ss_dssp GGHHHHHHH
T ss_pred cceEeehhh
Confidence 665544443
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.28 E-value=3.3e+02 Score=20.54 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912 74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC 142 (255)
Q Consensus 74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li 142 (255)
+..++|+++...-++....+..-+-.-+. ...+.+.++.++++.+|.-+.|++-=.+.+..+..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 68 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHHHH
Confidence 34556666655544332333322222222 233445677789999999999988666655555544
No 4
>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.51 E-value=1.7e+02 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=33.8
Q ss_pred CccccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Q 043912 1 WWRGHVTLR----TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQ 45 (255)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 45 (255)
|||+|..-- .+++.=+.|..-+++|++++..-.+...+-+.|+..
T Consensus 9 Ww~gnarv~n~sGrll~aHvaHaaLI~fWAGsmtLfEla~fdPs~PM~~ 57 (447)
T d2axtc1 9 WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYE 57 (447)
T ss_dssp GGGGGGTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCSGG
T ss_pred eeeeeeEEecCCCchHHHHHHHHHHHHHHcchhHhhhhhhcCCCCcchh
Confidence 888875321 556777889999999999999988887655677553
No 5
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.60 E-value=3.1e+02 Score=23.13 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=32.6
Q ss_pred CccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----hhHHH
Q 043912 1 WWRGHVTL----RTLHLLSIGQLASLTFAATNFTSSFIANLGVD----APVTQ 45 (255)
Q Consensus 1 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~P~~~ 45 (255)
|||++..- -.+++-=+.|..-+++|++++..-.+...+-+ .|+..
T Consensus 4 WwaGNarvin~SGr~LgAHvaHagLI~fWAGamtLfEla~fdPs~pv~~PM~e 56 (488)
T d2axtb1 4 WYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWR 56 (488)
T ss_dssp GGGGGGTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCTTTSCGGG
T ss_pred ceecceEEecCCCchHHHHHHHHHHHHHHhhhHHhhhhhhcCCCccccCcchh
Confidence 88887532 25566677888999999999999888875444 46543
No 6
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=4.43 E-value=65 Score=16.55 Aligned_cols=9 Identities=22% Similarity=-0.134 Sum_probs=6.9
Q ss_pred hhhhhhccc
Q 043912 246 ILLIDHFSF 254 (255)
Q Consensus 246 ~~~~~~~~~ 254 (255)
|+++||..|
T Consensus 3 sG~~Yhv~f 11 (30)
T d1ak2a2 3 SGRSYHEEF 11 (30)
T ss_dssp TCCEEBTTT
T ss_pred CCCCccccc
Confidence 678888766
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.08 E-value=3.5e+02 Score=13.13 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=8.7
Q ss_pred HHHHHHHccccCch
Q 043912 113 LILTRLLLGTRYSP 126 (255)
Q Consensus 113 ~ll~~l~l~ek~~~ 126 (255)
...-.+|+||+++.
T Consensus 16 lfffaiffreppri 29 (30)
T d2axtt1 16 LFFFAIFFREPPRI 29 (30)
T ss_dssp HHHHHHHTSCCCCC
T ss_pred HHHHHHHhcCCCCC
Confidence 34445677888753
No 8
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.55 E-value=4.3e+02 Score=12.93 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=11.9
Q ss_pred cccCchhhHHHHHHHHH
Q 043912 121 GTRYSPLKLFGAGICML 137 (255)
Q Consensus 121 ~ek~~~~~~~gi~l~~~ 137 (255)
|-|..+.+.+|+.+++.
T Consensus 5 kirvkpehvigvtvafv 21 (32)
T d1rh5c_ 5 KIRVKPEHVIGVTVAFV 21 (32)
T ss_dssp SCCCCHHHHHHHHHHHH
T ss_pred ceeeccceEEEEEEehh
Confidence 45666778888877763
No 9
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.34 E-value=1.1e+02 Score=17.17 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=0.0
Q ss_pred CccccchHH
Q 043912 1 WWRGHVTLR 9 (255)
Q Consensus 1 ~~~~~~~~~ 9 (255)
||+++++.|
T Consensus 35 Ww~g~~~g~ 43 (53)
T d1wlpb1 35 WWVIRKDDV 43 (53)
T ss_dssp SEEEESSSC
T ss_pred eEEEEECCc
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.10 E-value=5.6e+02 Score=13.17 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHH
Q 043912 156 WAIYLSLLGPCSMLSFS 172 (255)
Q Consensus 156 ~Gdll~l~sa~~~~A~~ 172 (255)
+|.++.+.-+ +.++-|
T Consensus 19 ~GlLlifvl~-vLFssY 34 (37)
T d2axtl1 19 LGLLLILVLA-LLFSSY 34 (37)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHH-HHHHHH
Done!