Query 043916
Match_columns 138
No_of_seqs 129 out of 1040
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2615 Permease of the major 99.6 1.4E-16 3.1E-21 123.0 5.0 131 2-138 277-410 (451)
2 TIGR00806 rfc RFC reduced fola 99.5 1.1E-13 2.4E-18 110.5 9.5 121 9-137 50-171 (511)
3 PRK03545 putative arabinose tr 99.5 3.5E-13 7.5E-18 104.6 11.2 121 10-137 34-154 (390)
4 TIGR02332 HpaX 4-hydroxyphenyl 99.5 3.9E-13 8.4E-18 105.6 11.1 121 10-137 33-153 (412)
5 PRK11195 lysophospholipid tran 99.4 9E-13 2E-17 103.0 10.3 116 13-138 31-146 (393)
6 PRK10213 nepI ribonucleoside t 99.4 1E-12 2.2E-17 102.6 10.2 119 12-137 47-165 (394)
7 PF07690 MFS_1: Major Facilita 99.4 3.3E-12 7.2E-17 96.4 12.3 119 12-137 24-142 (352)
8 TIGR00711 efflux_EmrB drug res 99.4 1.6E-12 3.6E-17 102.8 11.1 121 11-138 28-148 (485)
9 PRK03633 putative MFS family t 99.4 3.6E-12 7.9E-17 98.7 11.8 118 13-137 34-151 (381)
10 TIGR00900 2A0121 H+ Antiporter 99.4 3.9E-12 8.4E-17 96.4 11.7 122 14-137 28-149 (365)
11 PRK12382 putative transporter; 99.4 1.4E-12 3E-17 101.2 9.4 124 13-137 44-169 (392)
12 PRK14995 methyl viologen resis 99.4 3.1E-12 6.8E-17 102.7 10.5 120 11-137 32-152 (495)
13 PRK11646 multidrug resistance 99.4 5.3E-12 1.2E-16 98.8 11.3 119 12-137 38-156 (400)
14 TIGR00893 2A0114 d-galactonate 99.4 1.5E-12 3.1E-17 99.1 7.7 120 11-137 20-139 (399)
15 PRK10054 putative transporter; 99.4 3.4E-12 7.4E-17 99.8 9.7 119 12-137 35-153 (395)
16 PRK09705 cynX putative cyanate 99.4 2.6E-12 5.6E-17 100.2 9.0 118 11-136 35-152 (393)
17 KOG2532 Permease of the major 99.4 3.7E-12 8.1E-17 102.0 9.8 121 12-137 65-185 (466)
18 TIGR00710 efflux_Bcr_CflA drug 99.4 3.9E-12 8.4E-17 97.5 9.5 120 11-137 31-150 (385)
19 TIGR00894 2A0114euk Na(+)-depe 99.4 3.6E-12 7.8E-17 101.1 9.6 120 13-137 69-188 (465)
20 PRK10091 MFS transport protein 99.4 6.3E-12 1.4E-16 97.5 10.7 120 11-137 29-148 (382)
21 TIGR00891 2A0112 putative sial 99.4 9.1E-12 2E-16 95.8 11.0 119 12-137 39-157 (405)
22 PRK11663 regulatory protein Uh 99.4 4.7E-12 1E-16 100.0 9.3 120 11-137 49-168 (434)
23 PRK05122 major facilitator sup 99.4 1.7E-12 3.6E-17 100.8 6.6 124 13-137 44-169 (399)
24 PRK10504 putative transporter; 99.3 1.6E-11 3.5E-16 97.4 10.3 118 13-137 38-155 (471)
25 PRK15034 nitrate/nitrite trans 99.3 4.3E-11 9.2E-16 95.8 12.6 114 13-130 63-177 (462)
26 KOG3764 Vesicular amine transp 99.3 2.7E-11 5.8E-16 94.5 10.4 122 10-138 96-218 (464)
27 PRK11102 bicyclomycin/multidru 99.3 4.3E-11 9.3E-16 92.0 11.3 118 13-137 19-136 (377)
28 TIGR00897 2A0118 polyol permea 99.3 3.6E-11 7.8E-16 93.9 10.9 122 13-137 41-163 (402)
29 PRK09556 uhpT sugar phosphate 99.3 2.8E-12 6.1E-17 102.1 4.6 124 11-136 55-178 (467)
30 PRK12307 putative sialic acid 99.3 5.4E-11 1.2E-15 93.0 11.7 119 11-136 44-162 (426)
31 PRK11551 putative 3-hydroxyphe 99.3 4.7E-11 1E-15 92.8 11.2 117 13-136 43-159 (406)
32 TIGR00903 2A0129 major facilit 99.3 3E-11 6.6E-16 94.0 9.8 119 11-137 17-135 (368)
33 PRK10077 xylE D-xylose transpo 99.3 1E-10 2.2E-15 92.7 12.2 121 14-135 49-175 (479)
34 PRK10473 multidrug efflux syst 99.3 4.9E-11 1.1E-15 92.5 9.8 119 12-137 30-148 (392)
35 TIGR00895 2A0115 benzoate tran 99.3 2.9E-11 6.3E-16 92.6 8.5 121 10-137 42-162 (398)
36 TIGR00886 2A0108 nitrite extru 99.3 7.1E-11 1.5E-15 90.2 10.4 118 11-136 28-146 (366)
37 TIGR00885 fucP L-fucose:H+ sym 99.2 7.1E-11 1.5E-15 93.1 10.2 123 11-137 29-151 (410)
38 PRK15403 multidrug efflux syst 99.2 1.2E-10 2.6E-15 91.6 11.1 118 13-137 44-161 (413)
39 cd06174 MFS The Major Facilita 99.2 5.8E-11 1.3E-15 89.1 8.8 118 13-137 27-144 (352)
40 TIGR00881 2A0104 phosphoglycer 99.2 1.6E-11 3.5E-16 93.3 4.5 117 11-134 21-137 (379)
41 PRK10133 L-fucose transporter; 99.2 1.9E-10 4.2E-15 91.3 10.3 122 11-136 52-173 (438)
42 PRK11652 emrD multidrug resist 99.2 1.8E-10 3.9E-15 89.4 9.7 120 11-137 34-153 (394)
43 PRK03699 putative transporter; 99.2 2.9E-10 6.2E-15 88.6 10.7 119 12-137 34-152 (394)
44 PRK15402 multidrug efflux syst 99.2 3.5E-10 7.6E-15 88.1 11.2 119 12-137 40-158 (406)
45 COG2814 AraJ Arabinose efflux 99.2 3.2E-10 7E-15 88.9 10.8 120 11-137 39-158 (394)
46 TIGR00890 2A0111 Oxalate/Forma 99.2 1.1E-10 2.4E-15 88.7 8.0 117 10-134 28-144 (377)
47 PRK03893 putative sialic acid 99.2 4.9E-10 1.1E-14 89.3 11.9 119 12-137 47-165 (496)
48 TIGR00900 2A0121 H+ Antiporter 99.2 6.3E-10 1.4E-14 84.2 12.0 117 15-137 242-358 (365)
49 TIGR00879 SP MFS transporter, 99.2 5.7E-10 1.2E-14 87.1 11.8 116 17-136 68-183 (481)
50 TIGR00889 2A0110 nucleoside tr 99.2 4.8E-10 1E-14 88.4 11.5 119 17-138 248-367 (418)
51 TIGR00899 2A0120 sugar efflux 99.2 1.6E-10 3.6E-15 88.3 8.6 119 12-137 25-146 (375)
52 TIGR00924 yjdL_sub1_fam amino 99.1 1.7E-10 3.6E-15 92.6 8.5 118 13-137 41-162 (475)
53 TIGR00902 2A0127 phenyl propri 99.1 1E-09 2.2E-14 85.3 12.2 117 14-138 234-351 (382)
54 TIGR02718 sider_RhtX_FptX side 99.1 8.8E-10 1.9E-14 85.6 11.9 124 14-138 237-362 (390)
55 PF05977 MFS_3: Transmembrane 99.1 1.1E-09 2.4E-14 89.1 12.6 122 15-138 40-161 (524)
56 TIGR00880 2_A_01_02 Multidrug 99.1 2.7E-10 5.9E-15 74.9 7.5 103 28-137 6-108 (141)
57 PRK11551 putative 3-hydroxyphe 99.1 1.4E-09 3.1E-14 84.5 12.5 118 14-138 249-366 (406)
58 cd06174 MFS The Major Facilita 99.1 1.1E-09 2.3E-14 82.2 11.2 116 15-137 206-322 (352)
59 PRK11043 putative transporter; 99.1 8.8E-10 1.9E-14 85.7 11.0 119 12-137 33-151 (401)
60 TIGR01299 synapt_SV2 synaptic 99.1 1.4E-09 3E-14 91.6 12.2 117 13-136 195-311 (742)
61 PRK10489 enterobactin exporter 99.1 2.5E-10 5.3E-15 89.4 7.4 122 14-137 46-167 (417)
62 TIGR00712 glpT glycerol-3-phos 99.1 4.4E-10 9.4E-15 88.8 8.4 119 15-136 56-174 (438)
63 PRK10406 alpha-ketoglutarate t 99.1 1.6E-09 3.5E-14 85.4 11.6 118 16-134 56-178 (432)
64 PRK11646 multidrug resistance 99.1 2E-09 4.3E-14 84.3 11.9 116 17-138 240-355 (400)
65 TIGR00898 2A0119 cation transp 99.1 6.9E-10 1.5E-14 88.8 9.3 120 11-137 115-237 (505)
66 TIGR00901 2A0125 AmpG-related 99.1 4.7E-09 1E-13 80.3 13.4 111 15-126 239-355 (356)
67 TIGR00895 2A0115 benzoate tran 99.1 4.1E-09 8.8E-14 80.7 13.1 119 13-138 278-396 (398)
68 PRK10489 enterobactin exporter 99.1 9E-10 2E-14 86.2 9.5 117 15-138 254-370 (417)
69 TIGR00896 CynX cyanate transpo 99.1 9.1E-10 2E-14 84.3 9.2 118 11-137 26-143 (355)
70 TIGR00891 2A0112 putative sial 99.1 6.5E-10 1.4E-14 85.5 8.4 119 13-137 267-385 (405)
71 PRK11273 glpT sn-glycerol-3-ph 99.1 1.2E-09 2.6E-14 86.7 9.5 119 12-134 56-175 (452)
72 TIGR00890 2A0111 Oxalate/Forma 99.1 1.5E-09 3.2E-14 82.4 9.5 120 13-137 233-352 (377)
73 TIGR00887 2A0109 phosphate:H+ 99.0 4.1E-09 8.9E-14 84.8 12.3 121 15-136 51-171 (502)
74 PLN00028 nitrate transmembrane 99.0 3.4E-09 7.3E-14 84.9 11.8 117 11-135 62-178 (476)
75 TIGR00892 2A0113 monocarboxyla 99.0 1.1E-09 2.4E-14 87.2 8.7 119 12-137 46-164 (455)
76 PRK09874 drug efflux system pr 99.0 3.9E-09 8.4E-14 81.8 11.3 116 14-137 43-163 (408)
77 PRK15075 citrate-proton sympor 99.0 2E-09 4.2E-14 85.0 9.4 125 12-137 42-174 (434)
78 PRK10207 dipeptide/tripeptide 99.0 2E-09 4.3E-14 86.8 8.2 119 13-137 43-164 (489)
79 TIGR00711 efflux_EmrB drug res 99.0 4.4E-09 9.6E-14 83.3 10.1 121 14-137 285-405 (485)
80 PF07690 MFS_1: Major Facilita 99.0 5.9E-09 1.3E-13 78.7 10.1 118 12-133 234-352 (352)
81 COG2271 UhpC Sugar phosphate p 99.0 3.9E-10 8.5E-15 88.6 3.5 119 11-136 55-173 (448)
82 PRK08633 2-acyl-glycerophospho 99.0 4.1E-09 8.8E-14 91.6 10.2 116 18-137 45-160 (1146)
83 PRK15011 sugar efflux transpor 99.0 5.3E-09 1.2E-13 81.5 9.9 119 12-137 43-164 (393)
84 TIGR00901 2A0125 AmpG-related 99.0 1.1E-08 2.4E-13 78.3 11.3 120 12-137 15-140 (356)
85 PRK03893 putative sialic acid 99.0 1.6E-09 3.4E-14 86.4 6.7 120 13-137 304-423 (496)
86 TIGR00883 2A0106 metabolite-pr 99.0 6.3E-09 1.4E-13 79.4 9.8 119 17-136 27-152 (394)
87 PF05977 MFS_3: Transmembrane 98.9 4.9E-09 1.1E-13 85.3 9.3 118 13-137 247-364 (524)
88 PRK10504 putative transporter; 98.9 1.3E-08 2.8E-13 80.8 11.6 120 14-137 291-410 (471)
89 PRK12382 putative transporter; 98.9 7.4E-09 1.6E-13 80.3 9.5 110 21-137 250-359 (392)
90 COG2223 NarK Nitrate/nitrite t 98.9 2.4E-09 5.3E-14 83.9 6.6 121 10-135 39-162 (417)
91 TIGR00899 2A0120 sugar efflux 98.9 1.3E-08 2.9E-13 77.8 10.4 117 13-137 228-344 (375)
92 PRK06814 acylglycerophosphoeth 98.9 8.7E-09 1.9E-13 89.9 10.3 113 20-138 52-166 (1140)
93 PRK11902 ampG muropeptide tran 98.9 1E-08 2.2E-13 80.1 9.6 117 14-136 28-150 (402)
94 PRK10642 proline/glycine betai 98.9 2E-08 4.3E-13 80.6 11.5 107 27-134 64-172 (490)
95 PRK14995 methyl viologen resis 98.9 2.3E-08 4.9E-13 80.4 11.7 121 13-137 288-408 (495)
96 TIGR01299 synapt_SV2 synaptic 98.9 2.5E-08 5.5E-13 84.1 12.2 110 21-137 596-705 (742)
97 PTZ00207 hypothetical protein; 98.9 3.5E-08 7.6E-13 81.3 12.7 117 11-131 53-170 (591)
98 PRK11128 putative 3-phenylprop 98.9 3.6E-08 7.7E-13 76.5 12.2 117 14-138 234-351 (382)
99 PRK15011 sugar efflux transpor 98.9 3.8E-08 8.2E-13 76.7 11.4 117 13-137 245-361 (393)
100 TIGR00893 2A0114 d-galactonate 98.9 1.7E-08 3.6E-13 76.7 9.1 122 13-138 244-369 (399)
101 PRK03633 putative MFS family t 98.9 4.6E-08 1E-12 75.8 11.7 114 15-138 230-343 (381)
102 TIGR00805 oat sodium-independe 98.9 3E-10 6.6E-15 94.1 -0.6 126 11-137 59-229 (633)
103 PRK12307 putative sialic acid 98.9 2.8E-08 6.1E-13 77.7 10.2 119 14-137 260-378 (426)
104 TIGR00883 2A0106 metabolite-pr 98.9 2.6E-08 5.6E-13 76.1 9.7 121 13-137 248-370 (394)
105 PRK09952 shikimate transporter 98.8 4.6E-08 1E-12 77.5 11.3 96 39-134 82-179 (438)
106 KOG2816 Predicted transporter 98.8 4.6E-08 1E-12 78.5 11.3 121 3-135 265-385 (463)
107 KOG1330 Sugar transporter/spin 98.8 4E-09 8.6E-14 83.8 4.9 120 11-137 59-178 (493)
108 PRK05122 major facilitator sup 98.8 5.7E-08 1.2E-12 75.4 11.0 111 20-137 249-359 (399)
109 TIGR00892 2A0113 monocarboxyla 98.8 1.4E-07 3E-12 75.3 13.1 118 14-138 270-391 (455)
110 PRK03545 putative arabinose tr 98.8 6.1E-08 1.3E-12 75.3 10.8 117 13-138 234-351 (390)
111 PRK09874 drug efflux system pr 98.8 5E-08 1.1E-12 75.6 10.0 110 21-137 259-368 (408)
112 PRK09584 tppB putative tripept 98.8 3.7E-08 8.1E-13 79.6 9.5 120 13-138 50-172 (500)
113 TIGR00882 2A0105 oligosacchari 98.8 3.1E-08 6.7E-13 77.1 8.4 122 13-137 31-154 (396)
114 PRK09528 lacY galactoside perm 98.8 4.9E-08 1.1E-12 76.6 9.6 117 15-138 257-374 (420)
115 KOG2615 Permease of the major 98.8 2.1E-08 4.5E-13 78.3 6.8 114 17-138 65-178 (451)
116 PRK15462 dipeptide/tripeptide 98.8 2.4E-08 5.3E-13 80.7 7.5 118 14-137 39-159 (493)
117 TIGR00879 SP MFS transporter, 98.8 4.8E-08 1E-12 76.2 9.0 124 13-137 312-440 (481)
118 PRK11010 ampG muropeptide tran 98.7 2.5E-07 5.4E-12 74.6 12.5 123 13-137 251-373 (491)
119 PRK09528 lacY galactoside perm 98.7 3.1E-08 6.6E-13 77.7 6.9 121 14-137 40-162 (420)
120 TIGR00896 CynX cyanate transpo 98.7 2E-07 4.3E-12 71.4 11.1 116 14-137 226-343 (355)
121 TIGR01301 GPH_sucrose GPH fami 98.7 1.8E-07 4E-12 75.4 11.3 124 13-137 32-173 (477)
122 TIGR00788 fbt folate/biopterin 98.7 2.3E-08 5E-13 80.2 5.5 123 13-137 281-408 (468)
123 PRK09705 cynX putative cyanate 98.7 1.7E-07 3.8E-12 73.1 10.1 116 15-138 235-351 (393)
124 TIGR00792 gph sugar (Glycoside 98.7 4.5E-07 9.6E-12 71.1 11.9 114 18-137 255-375 (437)
125 PRK15402 multidrug efflux syst 98.7 4.8E-07 1E-11 70.5 11.9 121 13-137 244-365 (406)
126 PRK09556 uhpT sugar phosphate 98.7 2.4E-07 5.2E-12 73.9 10.4 120 13-137 287-407 (467)
127 PRK09848 glucuronide transport 98.6 8.8E-07 1.9E-11 70.2 12.7 119 14-137 258-383 (448)
128 TIGR00881 2A0104 phosphoglycer 98.6 4.5E-07 9.8E-12 68.8 10.3 123 13-137 245-367 (379)
129 PF03825 Nuc_H_symport: Nucleo 98.6 8.9E-07 1.9E-11 70.0 11.9 122 15-138 237-360 (400)
130 PRK08633 2-acyl-glycerophospho 98.6 1.4E-07 3E-12 82.2 8.0 117 14-137 262-379 (1146)
131 PRK03699 putative transporter; 98.6 2.5E-07 5.5E-12 72.0 8.7 117 13-137 234-350 (394)
132 PRK10213 nepI ribonucleoside t 98.6 8.4E-07 1.8E-11 69.4 11.5 118 13-138 245-362 (394)
133 PRK10091 MFS transport protein 98.6 8.4E-07 1.8E-11 68.9 11.4 118 13-138 228-346 (382)
134 PRK09952 shikimate transporter 98.6 1.2E-06 2.6E-11 69.5 12.1 122 13-137 279-401 (438)
135 PRK11010 ampG muropeptide tran 98.6 7E-07 1.5E-11 72.0 11.0 117 14-136 41-163 (491)
136 KOG2533 Permease of the major 98.6 4.9E-07 1.1E-11 73.2 9.8 117 13-136 74-190 (495)
137 PRK10054 putative transporter; 98.6 2.6E-07 5.5E-12 72.4 7.9 118 14-138 238-355 (395)
138 TIGR00882 2A0105 oligosacchari 98.6 9.2E-07 2E-11 68.8 10.4 117 15-138 249-366 (396)
139 PRK15075 citrate-proton sympor 98.5 4.3E-07 9.4E-12 71.7 8.7 121 13-137 267-389 (434)
140 PRK10077 xylE D-xylose transpo 98.5 1.3E-06 2.9E-11 69.2 11.4 119 13-134 299-418 (479)
141 TIGR00902 2A0127 phenyl propri 98.5 7.9E-07 1.7E-11 69.1 9.7 116 13-137 32-149 (382)
142 PRK11902 ampG muropeptide tran 98.5 2.5E-06 5.4E-11 66.6 12.6 120 12-137 237-360 (402)
143 PRK11128 putative 3-phenylprop 98.5 4.6E-07 1E-11 70.3 8.3 114 13-137 32-149 (382)
144 KOG0254 Predicted transporter 98.5 1.6E-06 3.4E-11 70.2 11.6 107 20-133 89-195 (513)
145 PRK06814 acylglycerophosphoeth 98.5 2E-07 4.3E-12 81.5 6.5 123 13-137 254-391 (1140)
146 TIGR00710 efflux_Bcr_CflA drug 98.5 4E-06 8.6E-11 64.2 12.7 119 13-134 235-354 (385)
147 TIGR00897 2A0118 polyol permea 98.5 2.6E-06 5.6E-11 66.6 11.4 121 13-137 250-371 (402)
148 TIGR00898 2A0119 cation transp 98.5 2.5E-06 5.4E-11 68.3 11.0 106 27-137 362-467 (505)
149 PF11700 ATG22: Vacuole efflux 98.4 3.5E-06 7.6E-11 68.1 11.1 124 12-137 309-437 (477)
150 PRK11195 lysophospholipid tran 98.4 3.4E-06 7.5E-11 66.0 10.5 115 14-136 235-350 (393)
151 PRK11102 bicyclomycin/multidru 98.4 1.2E-05 2.6E-10 61.7 13.2 119 14-136 224-343 (377)
152 COG0738 FucP Fucose permease [ 98.4 4.3E-06 9.3E-11 65.8 10.5 121 13-137 41-161 (422)
153 TIGR02332 HpaX 4-hydroxyphenyl 98.4 5.4E-06 1.2E-10 65.3 11.1 117 14-137 273-390 (412)
154 PRK11663 regulatory protein Uh 98.4 4.1E-06 8.9E-11 66.2 10.5 117 13-137 272-394 (434)
155 PRK11043 putative transporter; 98.4 8.9E-06 1.9E-10 63.2 12.2 121 14-137 232-352 (401)
156 TIGR00889 2A0110 nucleoside tr 98.4 2.7E-06 5.8E-11 67.2 9.2 112 13-137 31-151 (418)
157 TIGR01272 gluP glucose/galacto 98.4 8E-06 1.7E-10 62.3 11.4 114 14-137 172-285 (310)
158 PRK10642 proline/glycine betai 98.4 8.8E-06 1.9E-10 65.4 12.0 120 13-137 279-399 (490)
159 COG2814 AraJ Arabinose efflux 98.4 3.7E-06 7.9E-11 66.3 9.2 119 9-137 236-356 (394)
160 TIGR00924 yjdL_sub1_fam amino 98.4 4.5E-06 9.7E-11 67.2 10.0 114 22-136 314-437 (475)
161 PRK11273 glpT sn-glycerol-3-ph 98.3 4.6E-06 1E-10 66.3 9.9 119 14-137 283-405 (452)
162 PRK10473 multidrug efflux syst 98.3 8.6E-06 1.9E-10 63.2 11.1 113 13-137 232-344 (392)
163 TIGR00792 gph sugar (Glycoside 98.3 1.7E-06 3.7E-11 67.8 6.9 119 12-133 27-153 (437)
164 PRK09584 tppB putative tripept 98.3 1.1E-05 2.4E-10 65.3 11.6 110 22-132 318-434 (500)
165 PRK09669 putative symporter Ya 98.3 1.5E-05 3.2E-10 63.2 11.8 112 22-137 265-383 (444)
166 PRK11652 emrD multidrug resist 98.3 2.6E-05 5.6E-10 60.5 12.6 119 14-137 237-355 (394)
167 PRK10406 alpha-ketoglutarate t 98.3 1.7E-05 3.8E-10 62.6 11.8 111 13-127 272-383 (432)
168 PRK10133 L-fucose transporter; 98.2 1.7E-05 3.7E-10 63.1 10.8 116 12-137 287-402 (438)
169 TIGR00712 glpT glycerol-3-phos 98.2 6.6E-06 1.4E-10 65.1 7.4 118 14-137 281-403 (438)
170 KOG2504 Monocarboxylate transp 98.2 5.3E-06 1.2E-10 67.5 6.6 114 13-133 74-187 (509)
171 COG2807 CynX Cyanate permease 98.2 7.2E-05 1.6E-09 58.4 12.3 116 11-135 38-153 (395)
172 PRK10207 dipeptide/tripeptide 98.1 1.8E-05 3.8E-10 64.1 9.1 111 23-135 312-434 (489)
173 PRK10429 melibiose:sodium symp 98.1 5.2E-05 1.1E-09 60.8 11.5 118 18-137 264-388 (473)
174 TIGR00886 2A0108 nitrite extru 98.1 1.7E-05 3.7E-10 60.5 8.4 112 13-128 254-365 (366)
175 KOG0255 Synaptic vesicle trans 98.1 1.9E-05 4.1E-10 63.8 8.9 113 15-135 113-225 (521)
176 PF03209 PUCC: PUCC protein; 98.1 5.5E-05 1.2E-09 59.7 11.1 127 8-137 232-358 (403)
177 COG2270 Permeases of the major 98.1 1.6E-05 3.4E-10 63.0 7.9 118 12-136 280-397 (438)
178 COG2807 CynX Cyanate permease 98.1 5E-05 1.1E-09 59.3 10.0 118 13-138 236-355 (395)
179 KOG4686 Predicted sugar transp 98.0 2.7E-05 5.8E-10 59.6 7.0 118 12-138 292-410 (459)
180 TIGR00903 2A0129 major facilit 98.0 0.0001 2.2E-09 57.4 10.4 47 91-137 291-337 (368)
181 KOG0569 Permease of the major 98.0 0.00025 5.5E-09 57.4 12.6 109 22-134 62-170 (485)
182 PRK09669 putative symporter Ya 97.9 2.7E-05 5.7E-10 61.7 6.4 121 11-134 36-164 (444)
183 TIGR02718 sider_RhtX_FptX side 97.9 0.00014 3E-09 56.5 10.3 120 14-135 30-152 (390)
184 PF00083 Sugar_tr: Sugar (and 97.9 1.7E-07 3.8E-12 73.8 -6.7 115 18-136 44-158 (451)
185 KOG0252 Inorganic phosphate tr 97.9 7.9E-06 1.7E-10 65.4 2.3 116 16-132 80-196 (538)
186 PF06963 FPN1: Ferroportin1 (F 97.8 0.00097 2.1E-08 53.4 13.6 115 16-131 289-407 (432)
187 TIGR00887 2A0109 phosphate:H+ 97.8 0.00012 2.7E-09 58.9 8.7 98 38-137 352-449 (502)
188 KOG2504 Monocarboxylate transp 97.8 0.00064 1.4E-08 55.5 12.5 118 14-138 327-446 (509)
189 PF05978 UNC-93: Ion channel r 97.8 0.0021 4.5E-08 44.6 13.1 88 40-134 56-143 (156)
190 PF13347 MFS_2: MFS/sugar tran 97.8 7.6E-05 1.7E-09 58.9 6.7 113 20-137 260-379 (428)
191 COG0477 ProP Permeases of the 97.7 0.00065 1.4E-08 48.7 10.5 112 20-136 39-152 (338)
192 PLN00028 nitrate transmembrane 97.7 0.00025 5.4E-09 57.0 8.7 114 14-135 282-402 (476)
193 PRK10429 melibiose:sodium symp 97.7 0.00019 4.1E-09 57.5 7.7 117 12-131 34-158 (473)
194 TIGR00894 2A0114euk Na(+)-depe 97.7 0.00041 8.9E-09 55.2 9.2 118 13-137 290-417 (465)
195 KOG0569 Permease of the major 97.6 0.00062 1.3E-08 55.2 9.5 118 13-131 298-419 (485)
196 KOG3764 Vesicular amine transp 97.6 0.00012 2.7E-09 57.9 4.7 128 2-138 293-425 (464)
197 PF06609 TRI12: Fungal trichot 97.5 0.00088 1.9E-08 55.7 9.8 102 13-123 72-173 (599)
198 TIGR00885 fucP L-fucose:H+ sym 97.5 0.0015 3.3E-08 51.6 10.6 112 16-137 265-376 (410)
199 PRK09848 glucuronide transport 97.5 0.00081 1.7E-08 53.3 8.8 123 10-135 34-170 (448)
200 TIGR00788 fbt folate/biopterin 97.4 0.0011 2.3E-08 53.4 8.8 119 11-137 52-179 (468)
201 PRK11462 putative transporter; 97.4 0.0011 2.5E-08 53.1 8.8 121 12-135 37-165 (460)
202 PF03825 Nuc_H_symport: Nucleo 97.4 0.0017 3.7E-08 51.4 9.4 89 15-110 32-121 (400)
203 PRK11462 putative transporter; 97.4 0.0044 9.6E-08 49.7 11.8 114 19-137 262-382 (460)
204 PF01306 LacY_symp: LacY proto 97.4 0.0032 6.8E-08 50.2 10.4 114 17-137 256-370 (412)
205 PRK15462 dipeptide/tripeptide 97.3 0.0039 8.6E-08 50.8 11.1 114 13-132 304-430 (493)
206 PF06813 Nodulin-like: Nodulin 97.3 0.0019 4.1E-08 48.2 8.5 117 11-131 28-146 (250)
207 COG2211 MelB Na+/melibiose sym 97.3 0.0026 5.6E-08 51.4 9.4 92 14-110 266-357 (467)
208 TIGR01301 GPH_sucrose GPH fami 97.3 0.0041 9E-08 50.4 10.6 109 24-134 309-436 (477)
209 PF05631 DUF791: Protein of un 97.3 0.017 3.6E-07 45.2 13.4 101 14-122 63-168 (354)
210 PRK15403 multidrug efflux syst 97.1 0.0058 1.3E-07 48.2 9.9 121 13-137 247-368 (413)
211 PF01306 LacY_symp: LacY proto 97.1 9E-05 1.9E-09 58.9 -0.4 123 3-137 31-159 (412)
212 PF13347 MFS_2: MFS/sugar tran 97.1 0.00054 1.2E-08 54.0 3.8 118 11-131 28-155 (428)
213 KOG3762 Predicted transporter 97.0 0.0014 3E-08 53.8 5.5 95 38-138 423-518 (618)
214 COG2270 Permeases of the major 97.0 0.0013 2.9E-08 52.3 5.2 126 1-130 37-165 (438)
215 KOG2325 Predicted transporter/ 96.8 0.0045 9.8E-08 50.3 6.9 119 14-135 65-184 (488)
216 PF03209 PUCC: PUCC protein; 96.6 0.029 6.3E-07 44.6 9.9 123 13-137 8-146 (403)
217 PF12832 MFS_1_like: MFS_1 lik 96.6 0.008 1.7E-07 36.7 5.3 48 13-61 28-75 (77)
218 COG3104 PTR2 Dipeptide/tripept 96.5 0.0084 1.8E-07 48.7 6.4 94 14-112 55-149 (498)
219 PRK15034 nitrate/nitrite trans 96.5 0.023 5.1E-07 46.0 8.8 104 30-135 296-421 (462)
220 PF06779 DUF1228: Protein of u 96.4 0.015 3.2E-07 36.3 5.8 62 11-73 18-79 (85)
221 KOG2532 Permease of the major 96.4 0.021 4.6E-07 46.2 7.9 118 13-137 287-414 (466)
222 PF03137 OATP: Organic Anion T 96.3 0.00051 1.1E-08 56.4 -1.6 126 11-137 29-198 (539)
223 COG2223 NarK Nitrate/nitrite t 96.3 0.005 1.1E-07 48.9 3.9 116 13-131 247-364 (417)
224 KOG0253 Synaptic vesicle trans 96.3 0.0044 9.6E-08 49.2 3.3 91 40-136 400-490 (528)
225 PF03092 BT1: BT1 family; Int 95.8 0.096 2.1E-06 41.9 8.9 125 9-137 14-145 (433)
226 PF11700 ATG22: Vacuole efflux 95.8 0.45 9.7E-06 38.8 12.8 106 21-131 71-203 (477)
227 COG3104 PTR2 Dipeptide/tripept 95.6 0.31 6.6E-06 39.9 11.1 115 21-137 325-451 (498)
228 KOG0254 Predicted transporter 95.4 0.37 8.1E-06 39.1 11.3 103 26-129 335-444 (513)
229 TIGR01272 gluP glucose/galacto 95.4 0.028 6.1E-07 42.8 4.5 54 84-137 14-67 (310)
230 TIGR00769 AAA ADP/ATP carrier 95.3 1.3 2.8E-05 36.1 13.9 119 16-135 39-184 (472)
231 PF06609 TRI12: Fungal trichot 95.1 0.27 5.9E-06 41.2 9.6 110 21-135 350-460 (599)
232 COG2271 UhpC Sugar phosphate p 94.9 0.48 1E-05 38.2 10.0 114 15-135 283-402 (448)
233 PF03092 BT1: BT1 family; Int 94.6 0.19 4E-06 40.3 7.4 118 14-135 249-373 (433)
234 KOG0255 Synaptic vesicle trans 94.6 1.3 2.8E-05 35.8 12.4 109 23-135 353-461 (521)
235 KOG2816 Predicted transporter 93.9 0.32 6.9E-06 39.5 7.4 100 28-137 70-169 (463)
236 PF01770 Folate_carrier: Reduc 93.8 2.3 5E-05 34.1 11.8 114 15-135 35-148 (412)
237 COG0738 FucP Fucose permease [ 93.7 0.46 1E-05 38.0 7.7 111 15-135 267-377 (422)
238 KOG2563 Permease of the major 93.3 1.3 2.7E-05 36.1 9.6 115 18-134 77-194 (480)
239 COG2211 MelB Na+/melibiose sym 93.0 0.55 1.2E-05 38.2 7.3 117 12-131 40-164 (467)
240 KOG0637 Sucrose transporter an 92.2 0.75 1.6E-05 37.5 7.1 123 15-137 62-200 (498)
241 PF02487 CLN3: CLN3 protein; 90.2 2.9 6.4E-05 33.4 8.6 55 79-134 335-389 (402)
242 PF00083 Sugar_tr: Sugar (and 90.1 0.0014 3.1E-08 51.6 -10.1 97 40-136 305-405 (451)
243 TIGR00805 oat sodium-independe 89.8 0.34 7.3E-06 40.7 3.2 54 14-67 360-415 (633)
244 PRK03612 spermidine synthase; 89.5 11 0.00023 31.2 12.0 50 87-137 117-166 (521)
245 TIGR00926 2A1704 Peptide:H+ sy 88.4 7.6 0.00016 33.1 10.2 120 14-134 17-142 (654)
246 KOG3626 Organic anion transpor 88.4 0.038 8.2E-07 47.1 -3.3 124 13-137 125-294 (735)
247 KOG3098 Uncharacterized conser 88.4 4.9 0.00011 32.8 8.7 100 26-133 56-155 (461)
248 KOG2533 Permease of the major 87.3 7 0.00015 32.1 9.2 114 14-134 303-422 (495)
249 PF03137 OATP: Organic Anion T 80.1 0.55 1.2E-05 38.8 0.0 126 13-138 334-510 (539)
250 KOG3762 Predicted transporter 79.6 2.3 5E-05 35.5 3.4 51 11-62 37-87 (618)
251 KOG4332 Predicted sugar transp 75.9 36 0.00077 26.6 8.6 95 22-120 284-384 (454)
252 PF06963 FPN1: Ferroportin1 (F 70.6 56 0.0012 26.5 10.4 28 110-137 143-170 (432)
253 KOG0252 Inorganic phosphate tr 69.6 0.92 2E-05 37.2 -1.2 87 43-133 370-459 (538)
254 KOG4686 Predicted sugar transp 68.2 0.67 1.5E-05 36.1 -2.1 115 12-131 71-187 (459)
255 PF11947 DUF3464: Protein of u 67.8 38 0.00082 23.5 7.7 84 43-130 56-144 (153)
256 PRK07352 F0F1 ATP synthase sub 64.1 13 0.00029 25.9 4.0 59 2-60 2-60 (174)
257 KOG2325 Predicted transporter/ 62.2 0.64 1.4E-05 38.0 -3.4 118 19-136 301-444 (488)
258 PF00854 PTR2: POT family; In 58.2 43 0.00094 25.8 6.3 84 52-135 2-91 (372)
259 PF03219 TLC: TLC ATP/ADP tran 50.1 1.5E+02 0.0032 24.6 14.3 115 18-133 56-197 (491)
260 KOG2601 Iron transporter [Inor 42.9 63 0.0014 26.4 4.9 35 96-130 402-436 (503)
261 PRK13460 F0F1 ATP synthase sub 42.8 76 0.0017 22.0 5.0 45 15-59 12-56 (173)
262 MTH00169 ATP8 ATP synthase F0 40.2 79 0.0017 18.6 4.6 37 20-56 11-47 (67)
263 KOG4332 Predicted sugar transp 39.5 14 0.0003 28.8 0.8 84 14-105 66-149 (454)
264 PRK14472 F0F1 ATP synthase sub 38.6 98 0.0021 21.5 5.0 47 14-60 13-59 (175)
265 MTH00025 ATP8 ATP synthase F0 37.4 92 0.002 18.6 4.6 38 19-56 10-47 (70)
266 KOG1330 Sugar transporter/spin 36.3 1.4E+02 0.0031 24.7 6.1 35 100-134 369-403 (493)
267 PRK09174 F0F1 ATP synthase sub 32.5 1.2E+02 0.0027 21.8 4.8 41 19-59 53-93 (204)
268 PRK13453 F0F1 ATP synthase sub 32.4 1.4E+02 0.0031 20.7 5.0 44 16-59 15-58 (173)
269 CHL00118 atpG ATP synthase CF0 30.3 1.5E+02 0.0033 20.1 4.8 46 13-59 17-62 (156)
270 PF08069 Ribosomal_S13_N: Ribo 28.1 30 0.00066 20.0 0.8 12 15-26 43-54 (60)
271 KOG3880 Predicted small molecu 26.4 3.4E+02 0.0074 21.7 6.4 49 86-134 348-396 (409)
272 PRK14473 F0F1 ATP synthase sub 25.4 2.2E+02 0.0049 19.4 5.0 45 15-59 4-48 (164)
273 KOG0253 Synaptic vesicle trans 24.9 86 0.0019 25.7 3.0 95 16-118 109-203 (528)
274 KOG3098 Uncharacterized conser 24.6 4E+02 0.0087 21.9 9.9 84 44-127 305-402 (461)
275 PRK13454 F0F1 ATP synthase sub 22.9 2.1E+02 0.0046 20.0 4.5 40 20-59 32-71 (181)
276 KOG3626 Organic anion transpor 21.5 83 0.0018 27.5 2.5 54 14-67 422-477 (735)
277 PF00854 PTR2: POT family; In 20.9 3.9E+02 0.0085 20.5 6.8 43 85-127 329-371 (372)
278 TIGR02230 ATPase_gene1 F0F1-AT 20.8 2.4E+02 0.0053 18.0 5.8 23 38-60 60-82 (100)
No 1
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.64 E-value=1.4e-16 Score=123.02 Aligned_cols=131 Identities=27% Similarity=0.391 Sum_probs=104.1
Q ss_pred EEeeeecCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHHHHHHHHHHHHHHhhhhhhhhHH
Q 043916 2 FSLWAVSLRKY--GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII-ITRIAGVLSITLLTSYTYIAMLSGFS 78 (138)
Q Consensus 2 ~pl~~~~~~~~--gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~ 78 (138)
|+.|.+++..- ++||+++.|.|.+++..|+.+.+.|..++|++.+-.|..+ .....+.+..+.++++.....
T Consensus 277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~----- 351 (451)
T KOG2615|consen 277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART----- 351 (451)
T ss_pred HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc-----
Confidence 34555555544 9999999999999999999999999999999877776533 344444444444443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 79 LALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
...+.....++++.++...|..+.++++..|+++||++||+.+|+.+++|++||+++|.
T Consensus 352 -~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 352 -PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred -chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence 23566788899999999999999999999999999999999999999999999999973
No 2
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.50 E-value=1.1e-13 Score=110.47 Aligned_cols=121 Identities=7% Similarity=-0.012 Sum_probs=109.6
Q ss_pred CCCCCCCCCChhH-HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916 9 LRKYGGLSYSTKN-VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS 87 (138)
Q Consensus 9 ~~~~gglg~s~~~-ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 87 (138)
|...+++|+|.+| .|.+++.....+.+.|+ +.+++.||+|.|+++..+.+.|.+..+++++.+.+ ..+.+.+
T Consensus 50 p~L~~elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl------~~L~i~R 122 (511)
T TIGR00806 50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV------WHMQLME 122 (511)
T ss_pred HHHHHHcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3445689999999 99999999999999977 77999999999999999999999999999987653 2456788
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+++++..+ +....+.+++|++||++++|+..+...+|.+++|++++
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999 99999999999999999999999999999999998765
No 3
>PRK03545 putative arabinose transporter; Provisional
Probab=99.49 E-value=3.5e-13 Score=104.64 Aligned_cols=121 Identities=13% Similarity=0.021 Sum_probs=104.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
.....+|+|+.|+|+..+.+.+...+.|. +.+++.||+|+||++..+..+..+..+.+.+.++. | .+...+.+
T Consensus 34 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~~ 106 (390)
T PRK03545 34 DIAQSFHMQTAQVGLMLTIYAWVVALMSL-PLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNF-----T-VLLISRIG 106 (390)
T ss_pred HHHhHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHH
Confidence 34567999999999999999999999876 45899999999999999999999888877766542 2 23456677
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+++.+...|...+++++..|+|+||+++|+.++..+++..+||.+++
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 788888888999999999999999999999999999999999998875
No 4
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.48 E-value=3.9e-13 Score=105.62 Aligned_cols=121 Identities=15% Similarity=0.061 Sum_probs=106.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
....++|+|..|+|++.+.+.+...+.|. +.+++.||+|+|+++..+..++.+..++.++..+. ..+...+.+
T Consensus 33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l 105 (412)
T TIGR02332 33 TMGKDLGLSATMFGLAATLFYAAYVICGI-PSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP------ESLYLLRIL 105 (412)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHH
Confidence 34568999999999999999999999977 56899999999999999999999998888776542 234567788
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+++.+...|....++++..|+++||+++|+.+...+++..+||.+++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988764
No 5
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.44 E-value=9e-13 Score=102.96 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=100.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++|.++.+.+++.+.+.+...+.+. +.+++.||+|+||++.++..++.+..+++.+... . ...+.++++
T Consensus 31 ~~~~~s~~~~~~~~~~~~l~~~l~~~-~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~------~---~~~r~l~G~ 100 (393)
T PRK11195 31 KELHYPDWSQPLLQMFFVLAYIVLAP-FVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH------P---LLAYGLVGI 100 (393)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHh-hhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHH
Confidence 45788999999999999999999955 7899999999999999999998887766544322 1 245667899
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+.+...|+..+++.+.+|+|+|+++||+.+...+++..+||.++|+
T Consensus 101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999873
No 6
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.43 E-value=1e-12 Score=102.65 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=103.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..++|++++|+|+..+.+.+...+.+. +.+++.||+|+||++..+..+..+..++..+.++. | .+...+.+.+
T Consensus 47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~l~G 119 (394)
T PRK10213 47 AQDLGISEGVAGQSVTVTAFVAMFASL-FITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF-----S-LLLIGRACLG 119 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH-----H-HHHHHHHHHH
Confidence 457899999999999999999999966 66899999999999999999999888777665432 2 3446677888
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|...+++++.+|+|+|++++|+..+..+++..+||.+++
T Consensus 120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999998875
No 7
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.43 E-value=3.3e-12 Score=96.43 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=101.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...+|+|+.|+|++.+...+...+.+. +.+++.||+|+|+++..+..+..+......+.++ .| .+...+.+.+
T Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~g 96 (352)
T PF07690_consen 24 AEELGLSPSQIGLLFSAFFLGSALFSP-FAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASN-----FW-LLLIARFLLG 96 (352)
T ss_dssp HCCSTTTSHCHHHHHHHHHHHHHHHHH-HHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCC-----HH-HHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhh-----HH-HHhhhccccc
Confidence 356899999999999999999999965 7799999999999999999998888433333222 24 4567788889
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|....++.+..|+|+|++.+|+.+...+++..+||.+++
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 142 (352)
T PF07690_consen 97 IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG 142 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999998765
No 8
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.43 E-value=1.6e-12 Score=102.85 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=106.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
....+|.|++++|++.+.+.+...+. .++.+++.||+|+|+.+..+..+..+......+.++. ..+...+.+.
T Consensus 28 ~~~~~g~s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~ 100 (485)
T TIGR00711 28 IAGDLGSSLSQVQWVITSYMLANAIS-IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL------ELMIIFRVIQ 100 (485)
T ss_pred HHHhcCCChhhhhHHHHHHHHHHHHH-HHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCH------HHHHHHHHHH
Confidence 44568999999999999999999999 4588999999999999999999999888877765442 2344677888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+++.+...|...+++.+.+|+|+||+++|+.++...++..+||.++|+
T Consensus 101 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 101 GFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 889999999999999999999999999999999999999999998763
No 9
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.41 E-value=3.6e-12 Score=98.72 Aligned_cols=118 Identities=16% Similarity=-0.002 Sum_probs=102.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+|..|+|++.+.+.+...+.+. +.+++.||+|+|+.+..+..+..+.+...++.++. | .+...+++.++
T Consensus 34 ~~~~~s~~~~G~~~s~~~l~~~~~~~-~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G~ 106 (381)
T PRK03633 34 AQEHLPTWQVGVVSSSYFTGNLVGTL-LAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-----W-SWLAWRFVAGI 106 (381)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHH
Confidence 45899999999999999999999965 78999999999999999999999888877765432 2 34456788888
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...|.....+++..|+++||+++|..++...+|..+||.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 107 GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888988888889999999999999999999999999998876
No 10
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.41 E-value=3.9e-12 Score=96.36 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=102.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.++.++.|+|++.+...+...+.+. +.+++.||+|+||++..+..+......+.++.....+...|. +...+.+..++
T Consensus 28 ~~~~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~ 105 (365)
T TIGR00900 28 AGTGSASVLSLAALAGMLPYVVLSP-IAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ-VYVLAGILAIA 105 (365)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHH-hhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHH
Confidence 3688999999999999999999955 779999999999999999988888877777665221111232 34566777888
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...|...+++.+..|+|+|++.+|+.+...+++..+||.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 106 QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865
No 11
>PRK12382 putative transporter; Provisional
Probab=99.41 E-value=1.4e-12 Score=101.18 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=98.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK 90 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~ 90 (138)
.++|+|+.|+|++.+.+.+...+.|. +.+++.||+|+||.+..+...+.+..+.+....... ....+..+...+.+.
T Consensus 44 ~~lg~s~~~~g~~~s~~~~~~~i~~~-~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (392)
T PRK12382 44 HDLGFGNTMVGIAVGIQFLATVLTRG-YAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLIL 122 (392)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhh-hhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999966 789999999999999998877665543222111100 000122345677888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...|...+++.+..|+|+||+++|+.+...+++..+||.+++
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 123 GFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 88998888989999999999999999999999999999999998765
No 12
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.39 E-value=3.1e-12 Score=102.68 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=103.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
....+|.+..|++|+.+.+.+.....|. +.+++.||+|+|+++..+..++.++.+..++.++. | .+...+.++
T Consensus 32 i~~~l~~s~~~~~~~~~~~~l~~~~~~~-~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~-----~-~li~~r~l~ 104 (495)
T PRK14995 32 LSMTLGASGNELLWIIDIYSLVMAGMVL-PMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA-----S-WLIATRALL 104 (495)
T ss_pred HHHHhCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH-----H-HHHHHHHHH
Confidence 4467999999999999999999999976 77999999999999999999999998888776542 2 345677888
Q ss_pred HHHHHHHHHHHHHHHhhc-ccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRA-VEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~-~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...|.....+.+. .|+++|++.+|+......++..+||.++|
T Consensus 105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 105 AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989888877666 47899999999999999999999999876
No 13
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.38 E-value=5.3e-12 Score=98.83 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=102.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...+|+|+.++|+..+...+...+.+ .+.+++.||+|+|++...+.....+.++.+++.++ .|. +...+.+.+
T Consensus 38 ~~~~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-----~~~-l~~~~~l~g 110 (400)
T PRK11646 38 VDQLGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE-----PWL-LWLSCILSG 110 (400)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHH
Confidence 35689999999999999999999885 47799999999999999999999998888776543 132 335566778
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|...+++.+.+|+|+||+++|+.++..+++..+||.++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g 156 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGS 156 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999876
No 14
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.38 E-value=1.5e-12 Score=99.07 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=104.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
....+|+|+.|+|++.+.+.+...+.+. +.+++.||+|+|+.+..+..+..+...++++..+. | .+...+.+.
T Consensus 20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~ 92 (399)
T TIGR00893 20 LQEDLGLSAAQYGYVFSAFSWGYVVGQF-PGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY-----V-SLYILRVLL 92 (399)
T ss_pred HHHhhCCChhhHHHHHHHHHHHHHHHHH-hHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH-----H-HHHHHHHHH
Confidence 4457899999999999999999999965 78999999999999999999888888877765532 2 344667788
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...|....++++..|+|+||+.+|+.++...++..+||.+++
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999998765
No 15
>PRK10054 putative transporter; Provisional
Probab=99.38 E-value=3.4e-12 Score=99.78 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=97.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..++|+|..++|+..+.+.+...+.|. +.+++.||+|+|++...+.....+.++++++.++. |..+ ....+..
T Consensus 35 ~~~~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~g 107 (395)
T PRK10054 35 SRQYSLSVDLIGYAMTIALTIGVVFSL-GFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV-----TLVV-LFFALIN 107 (395)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH-----HHHH-HHHHHHH
Confidence 346999999999999999999999975 67999999999999999998888888877765432 2222 2233434
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+.+...|....+.++..|+|+|++++|+..+..+++.++||.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667889999999999999999999999999999999998875
No 16
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.37 E-value=2.6e-12 Score=100.23 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=102.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|..|.|+..+.+.+...+.|. ..+++.||+|+|+++..+..+++++.+..++.++. + .+...+++.
T Consensus 35 i~~~~~~s~~~~g~~~s~~~~~~~l~~~-~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~-----~-~ll~~r~l~ 107 (393)
T PRK09705 35 LRQASGMSFSVAALLTALPVVTMGGLAL-AGSWLHQHVSERRSVAISLLLIAVGALMRELYPQS-----A-LLLSSALLG 107 (393)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcch-----H-HHHHHHHHH
Confidence 4567999999999999999999999965 77999999999999999999999999988887653 2 345678899
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+++.+...+....++++..| |+||+++|+.++....+..+|+.++
T Consensus 108 Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~ 152 (393)
T PRK09705 108 GVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAIT 152 (393)
T ss_pred HhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999886 8899999999988888887777654
No 17
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.7e-12 Score=102.04 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=110.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.+.++||++|.|++++......++.|+ ...++.+|+|.|+++..+.+++++..+++|++..... | .+...+++++
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~i-P~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~---~-~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQI-PGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF---Y-LLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHc-CcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc---h-hhHHHHHHhH
Confidence 568999999999999999999999977 6689999999999999999999999999999876532 3 4568999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+..+|++..+.++++|++||++..++..+...++.+++-+++|
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg 185 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSG 185 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999888776655
No 18
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.37 E-value=3.9e-12 Score=97.54 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=103.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|.|++++|++.+.+.+...+.+. +.+++.||+|+|+.+..+..+..+..+.+++.++. + .+...+.+.
T Consensus 31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~ 103 (385)
T TIGR00710 31 IAADLSTPASIVQMTLTLYLLGFAAGQL-LWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI-----E-TLLVLRFVQ 103 (385)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHH
Confidence 3456899999999999999999999965 77999999999999999999888888877765432 2 233556777
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+...|...+++.+..|+|+||+++|+.++...++..+||.++|
T Consensus 104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999998765
No 19
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.37 E-value=3.6e-12 Score=101.10 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=104.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++++|..+.|++++.+.+.+.+.|. +.+++.||+|+|+++..+..++.+..++.++..... ...+...+++.++
T Consensus 69 ~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~~~G~ 143 (465)
T TIGR00894 69 PNFKWSGALQGLILSSHFYGQIIIQI-PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG----IALVVFCRVIQGL 143 (465)
T ss_pred CCCCCCHHHhhHHHHHHHHHHHHHHc-chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC----chHHHHHHHHHHH
Confidence 37999999999999999999999976 679999999999999999999988888776542211 1234567888899
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+..+|....+++++.|+++||+++|+.++...++..++|.+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~ 188 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISG 188 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 20
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.37 E-value=6.3e-12 Score=97.50 Aligned_cols=120 Identities=7% Similarity=0.043 Sum_probs=103.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|..++|+..+.+.+...+.|. +.+++.||+|+|+++..+..++.+..++..+.++. | .+...+.+.
T Consensus 29 ~~~~~g~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~-----~-~l~~~r~l~ 101 (382)
T PRK10091 29 LAHDVGISIPAAGHMISYYALGVVVGAP-IIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSY-----L-MLAIGRLVS 101 (382)
T ss_pred HHHHcCCCHHHHhHHHHHHHHHHHHHHH-HHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcH-----H-HHHHHHHHH
Confidence 3457899999999999999999999965 77999999999999999999999988888776542 2 234567788
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...|....++++..|+++|++++|+..+..+++..+||.+++
T Consensus 102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 88888888888899999999999999999999999999999998865
No 21
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.36 E-value=9.1e-12 Score=95.82 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=102.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.+.+|+|+.|+|++.+...+...+.+. +.+++.||+|+|+++..+.....+..++.++.++. + .+...+.+.+
T Consensus 39 ~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G 111 (405)
T TIGR00891 39 AGEFGLTTVDAASLISAALISRWFGAL-MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY-----I-TMFIARLVIG 111 (405)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHH
Confidence 456899999999999999999999965 77999999999999999999888888777765432 2 2345677888
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|...+++++..|+|+|++++|+.++...+|..++|.+++
T Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999997654
No 22
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.35 E-value=4.7e-12 Score=99.97 Aligned_cols=120 Identities=13% Similarity=0.024 Sum_probs=102.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|+.|.|++.+.+.+...+.|. +.+++.||+|+|+++..+..++.+..+++++.++. | .+...+.+.
T Consensus 49 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~ 121 (434)
T PRK11663 49 MLADLGLSRSDIGLLATLFYITYGVSKF-VSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL-----W-AFALLWVLN 121 (434)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHh-hhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHH
Confidence 3456899999999999999999999966 77999999999999999999999988888776442 2 233445566
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+..+|....++++.+|+++||+++|+.++...++..++|.++|
T Consensus 122 g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 122 AFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788999999999999999999999999999999999998764
No 23
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.35 E-value=1.7e-12 Score=100.80 Aligned_cols=124 Identities=13% Similarity=0.028 Sum_probs=100.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF--SLALFINCASVMK 90 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~~~~~~ 90 (138)
..+|+|+.++|++.+.+.+...+.|. +.+++.||+|+||++..+...+.+..+.+.+.....+. .....+...+++.
T Consensus 44 ~~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (399)
T PRK05122 44 DQLGFSAFLAGLVISLQYLATLLSRP-HAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLL 122 (399)
T ss_pred HhcCccHHHHHHHHHHHHHHHHHhch-hhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence 45899999999999999999999976 77999999999999999998877765544433221110 1122355677888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...|....++.+..|+|+||+++|+.+...+++..+||.+++
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 123 GIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998765
No 24
>PRK10504 putative transporter; Provisional
Probab=99.31 E-value=1.6e-11 Score=97.37 Aligned_cols=118 Identities=19% Similarity=0.041 Sum_probs=100.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++|+|+.+.|++.+.+.+...+.+. +.+++.||+|+||++..+..++....+...+.++. + .+...+.+.++
T Consensus 38 ~~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~g~ 110 (471)
T PRK10504 38 QSLGESPLHMHMVIVSYVLTVAVMLP-ASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTL-----N-ELLLARVLQGV 110 (471)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCH-----H-HHHHHHHHHHh
Confidence 46899999999999999998888854 78999999999999999888888777665544321 2 23456788889
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...|...+.+.+..|+++|++.+|+.+...+++..+||.++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 111 GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999899999999999999999999999999999999999999876
No 25
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.31 E-value=4.3e-11 Score=95.81 Aligned_cols=114 Identities=10% Similarity=0.011 Sum_probs=90.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM-LSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~ 91 (138)
.++|+|..|++++.+...+...+.|++. +++.||+|.|+++..+..++.+..+++++... .... +..+....++..
T Consensus 63 ~~~~ls~~q~g~l~ai~~l~~al~rip~-G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s--~~~lli~r~l~G 139 (462)
T PRK15034 63 IGFNFTTDQLFLLTALPSVSGALLRVPY-SFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP--FGIFIVIALLCG 139 (462)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC--HHHHHHHHHHHH
Confidence 3799999999999999999999998854 99999999999999999999988888876511 0001 123345566666
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT 130 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ 130 (138)
++ +..++.....++++.|+|+||+++|+.+....+|..
T Consensus 140 ig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~ 177 (462)
T PRK15034 140 FA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVS 177 (462)
T ss_pred HH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHH
Confidence 66 558899999999999999999999999644444443
No 26
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.7e-11 Score=94.55 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=108.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
.+...++-+..|+|++++...+.+.+++ .+++.+.||+|.+-.+..|+.+.....+++.+.... ..+.+++.+
T Consensus 96 ~~~~~~~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy------~~l~vAR~L 168 (464)
T KOG3764|consen 96 AEAISLDRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY------PMLFVARSL 168 (464)
T ss_pred hhccCccccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh------HHHHHHHHH
Confidence 3455677888999999999999999994 477899999999999999999999999988876653 356789999
Q ss_pred HHHHHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
++++++++..+..+++.+..|+ +|||+++|+.-...++|-.+||++||.
T Consensus 169 QgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGi 218 (464)
T KOG3764|consen 169 QGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGI 218 (464)
T ss_pred hhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccc
Confidence 9999999999999999999997 678999999999999999999999984
No 27
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.29 E-value=4.3e-11 Score=91.97 Aligned_cols=118 Identities=10% Similarity=0.109 Sum_probs=101.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++|+|+.|+|+..+.+.+...+.+. +.+++.||+|+|+++..+.....+....+++..+. + .+...+.+.++
T Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~l~g~ 91 (377)
T PRK11102 19 ADFGVSAGSVQMTLSAYILGFAIGQL-FYGPMADSFGRKPVILGGTLVFALAAVACALAQTI-----D-QLIYMRFLHGL 91 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-hhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHHHH
Confidence 46899999999999999999999965 77999999999999999999888888877765432 2 23355667788
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...+...+++.+..|+|+|++++|+.+....++..++|.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999999999998764
No 28
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.29 E-value=3.6e-11 Score=93.94 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=95.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++|+|+.|+|+..+.+++...+.+. +.+++.||+|+||++..+..++....+++......... +..+...+.+.++
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~-~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~i~G~ 117 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAW-ISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHAN--YPLILLFYGIRGL 117 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCcc--HHHHHHHHHHHHc
Confidence 45799999999999999999999965 77999999999999999999888876654322111111 2223345666677
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHh-hHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTK-TAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r-~igP~i~G 137 (138)
+.+...+.....+.+..|+|+||+++|+.++..+++. .+||.++|
T Consensus 118 g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~ 163 (402)
T TIGR00897 118 GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS 163 (402)
T ss_pred chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888899999999999999999999997 57887664
No 29
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.29 E-value=2.8e-12 Score=102.07 Aligned_cols=124 Identities=11% Similarity=-0.006 Sum_probs=101.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|..|.|++.+.+.+.+.+.|. +.+++.||+|+|+++..+..++.+....++......... ...+...+.+.
T Consensus 55 i~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 132 (467)
T PRK09556 55 MISTYGLSTTELGMIGLGFSITYGVGKT-LVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS-LGLMIALWALS 132 (467)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHh-hhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHH
Confidence 3467999999999999999999999977 779999999999999999888888777666531100001 22344667788
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+++.+...|....+++++.|++|||+++|+.+...++|.+++|.+.
T Consensus 133 G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 133 GFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 8888888999999999999999999999999999999998887653
No 30
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.28 E-value=5.4e-11 Score=92.98 Aligned_cols=119 Identities=6% Similarity=-0.038 Sum_probs=102.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|+.|.++..+.+.+...+.+. +.+++.||+|+|+++..+.....+.....++.++. | .+...+.+.
T Consensus 44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~l~ 116 (426)
T PRK12307 44 IKADLGLTDMEGAFLATAAFIGRPFGGA-LFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV-----I-MLTLSRFIV 116 (426)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHH
Confidence 3457899999999999999999999965 77999999999999999999999988877766542 2 344667788
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+++.+..+|....++.+..|+|+||+++|+.+...++|..++|.+.
T Consensus 117 G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 117 GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999988654
No 31
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.28 E-value=4.7e-11 Score=92.78 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=100.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++|+|++|+|++.+...+...+.+. +.+++.||+|+|+++..+..+..+..++.++..+. + .+...+.+.++
T Consensus 43 ~~~~~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~G~ 115 (406)
T PRK11551 43 QEFGLDVAQMGWAFSAGILGLLPGAL-LGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF-----P-SLLVARLLTGV 115 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHh
Confidence 46899999999999999999999855 77999999999999999998888877777665432 2 23456677788
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+.+...|...+++.+..|+|+||+++|+.+....++..++|.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 116 GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999998765
No 32
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.28 E-value=3e-11 Score=93.98 Aligned_cols=119 Identities=7% Similarity=-0.106 Sum_probs=90.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.+.++|+|..|+|++.+.+.+.+.+.|.+ .+++.||+|+|++...+...............+ +..+...+++.
T Consensus 17 i~~~~~~s~~~~g~~~s~~~~g~~i~~~~-~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~R~l~ 89 (368)
T TIGR00903 17 VAEDIDVSKEELGLLAITYPAAFLALTIP-SGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN------YEWLLACQLLA 89 (368)
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHH
Confidence 34579999999999999999999999884 699999999888766555444333221111011 23455778888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+.. +.....+++..|+|+||+++|+.++...+|..++|.+++
T Consensus 90 G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~ 135 (368)
T TIGR00903 90 ALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGL 135 (368)
T ss_pred HhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888754 455566689999999999999999999999999998764
No 33
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.26 E-value=1e-10 Score=92.74 Aligned_cols=121 Identities=12% Similarity=-0.019 Sum_probs=99.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAML------SGFSLALFINCAS 87 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~l~~~~ 87 (138)
.+|++..+.|+..+.+.+...+.|. +.+++.||+|+||++..+..++.++.+...+.... .+...+..+...+
T Consensus 49 ~~~~~~~~~~~~~s~~~ig~~~~~~-~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 127 (479)
T PRK10077 49 SESAANSLLGFCVASALIGCIIGGA-LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR 127 (479)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence 4689999999999999999999976 77999999999999999999887776655432110 0111223455788
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.+.+++.+...|...+++++.+|+++||+..|+.+....+|..++|.+
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~ 175 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887754
No 34
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.25 E-value=4.9e-11 Score=92.49 Aligned_cols=119 Identities=8% Similarity=0.069 Sum_probs=100.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..++|.|..++|+..+.+.+...+.|. +.+++.||+|+|+.+..+.....+...++...++. + .+...+.+..
T Consensus 30 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~l~g 102 (392)
T PRK10473 30 AADLNASEAQLHIAFSVYLAGMAAAML-FAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS-----S-LFLAGRFLQG 102 (392)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHH-hHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH-----H-HHHHHHHHHH
Confidence 356899999999999999999999865 78999999999999999998888888777655432 2 2334566777
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...+...+++++..|+|+|++.+|+.+....++..++|.+++
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999998754
No 35
>TIGR00895 2A0115 benzoate transport.
Probab=99.25 E-value=2.9e-11 Score=92.56 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=101.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
....++|+++.++|++.+...+...+.+. +.+++.||+|+|+.+..+.....+..+++.+..+. + .+...+.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~ 114 (398)
T TIGR00895 42 AISAEWGLDPVQLGFLFSAGLIGMAFGAL-FFGPLADRIGRKRVLLWSILLFSVFTLLCALATNV-----T-QLLILRFL 114 (398)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccch-----H-HHHHHHHH
Confidence 34457899999999999999999998854 77999999999999999998888877776654332 2 23345667
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+++.+...|...+++.+..|+++||+++|+.+....++..+||.++|
T Consensus 115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 777888888999999999999999999999999999999999998764
No 36
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.25 E-value=7.1e-11 Score=90.21 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIA-MLSGFSLALFINCASVM 89 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~ 89 (138)
....+|+|+.++|++.+...+...+.+. +.+++.||+|+|+.+..+..+..+..+++++.. +. | .+...+.+
T Consensus 28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~-----~-~~~~~~~~ 100 (366)
T TIGR00886 28 IKDDLGLSTAQLGNLVAVPVLAGAVLRI-ILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY-----S-VLLLLRLF 100 (366)
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH-----H-HHHHHHHH
Confidence 3457999999999999999999999965 779999999999999999999999888877665 32 2 23345666
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
..++.+. ++....++++..|+|+||+.+|+.++...++..++|.++
T Consensus 101 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 101 IGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 6766554 455788999999999999999999988888887777654
No 37
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.24 E-value=7.1e-11 Score=93.05 Aligned_cols=123 Identities=6% Similarity=-0.180 Sum_probs=102.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.+.++|+|..|.|++.+...+...+.. ...+++.||+|+|+....+..++..+..++.......+ +..+...+++.
T Consensus 29 ~~~~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~---~~~~l~~~~l~ 104 (410)
T TIGR00885 29 FQQAFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMN---YTLFLVGLFIL 104 (410)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHH
Confidence 356789999999999999999999994 47899999999999999999999998877644322111 22334566777
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+...+..+.++++..|+|+|++.+++.|+..++|..+||.+++
T Consensus 105 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 105 TAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888989999999999999999999999999999999998754
No 38
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.23 E-value=1.2e-10 Score=91.60 Aligned_cols=118 Identities=10% Similarity=0.039 Sum_probs=101.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|.|..+.++..+.+.+...+.|. +.+++.||+|+|+++..+..++.+..++..+.++. + .+...++++++
T Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-----~-~l~~~r~l~Gi 116 (413)
T PRK15403 44 RDFNADVSLAPASVSLYLAGGMALQW-LLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM-----T-QFLIARFIQGT 116 (413)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH-----H-HHHHHHHHHHH
Confidence 46899999999999999999999987 68999999999999999999999888877765432 2 34467788888
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...+...+.+.+..|+|++++.+|+..+...++..+||.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~ 161 (413)
T PRK15403 117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGA 161 (413)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666677788889999999999999999999999999998875
No 39
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.23 E-value=5.8e-11 Score=89.11 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=101.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|.+++++++..+...+...+.+. +.+++.||+|+|+....+.....+....+++.++. + .+...+.+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~ 99 (352)
T cd06174 27 EDLGLSASQAGLIVSAFSLGYALGSL-LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL-----W-LLLVGRFLLGL 99 (352)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHc
Confidence 34689999999999999999999955 77999999999999999999998888877765331 2 33456667778
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...|...+++.+..|+|+|++.+|+.+...+++..+||.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (352)
T cd06174 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144 (352)
T ss_pred ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999998765
No 40
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.20 E-value=1.6e-11 Score=93.28 Aligned_cols=117 Identities=10% Similarity=0.050 Sum_probs=100.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
....+|+|..|+|++.+...+...+.+. +.+++.||+|+|+++..+..+..+..+++++..+. | .+...+.+.
T Consensus 21 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~ 93 (379)
T TIGR00881 21 LVEEIGLSKTDLGLLLSSFSIAYGISKF-VMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL-----W-VMAALWALN 93 (379)
T ss_pred HHHHhCCCHhHHHHHHHHHHHHHHhhhh-hhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH-----H-HHHHHHHHH
Confidence 4456899999999999999999999965 77999999999999999999998888887766532 2 234566677
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
+++.+...|...+++.+..|+|+||+.+|+.+....++..++|.
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 94 GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence 78888888999999999999999999999999999999999983
No 41
>PRK10133 L-fucose transporter; Provisional
Probab=99.18 E-value=1.9e-10 Score=91.28 Aligned_cols=122 Identities=7% Similarity=-0.129 Sum_probs=100.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.+..+|.|+.|.|+..+.+.+...+.|. +.+++.||+|+|++...+..++.++.+++......++ +..+...+++.
T Consensus 52 i~~~~~~s~~~~gl~~~~~~~g~~i~~~-~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~ 127 (438)
T PRK10133 52 FQQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN---YTLFLVGLFII 127 (438)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Confidence 3557899999999999999999999976 6799999999999999999999998866532111111 23455678888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.++.+...+..+.++.+..|++++++..++.++..++|..+||.++
T Consensus 128 G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887777777789999999999999999765
No 42
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.18 E-value=1.8e-10 Score=89.38 Aligned_cols=120 Identities=18% Similarity=0.084 Sum_probs=99.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|+.++|+..+.+.+...+.+. +.+++.||+|+|+.+..+.....+......+..+. + .+...+.+.
T Consensus 34 i~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~~~ 106 (394)
T PRK11652 34 MARDLNVREGAVQAVMAAYLLTYGLSQL-FYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL-----T-VLIAASAIQ 106 (394)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHH
Confidence 3457899999999999999999999965 78999999999999999988888877766654332 2 234556677
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...+....+..+..+++++++.++..+....++..+||.++|
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 153 (394)
T PRK11652 107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG 153 (394)
T ss_pred HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777878888889999999999999999999999999998765
No 43
>PRK03699 putative transporter; Provisional
Probab=99.18 E-value=2.9e-10 Score=88.56 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=98.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...+|+|.+|.|+..+...+...+.+. +.+++.||+|+||++..+.....+..++..+.++. + .+...+.+..
T Consensus 34 ~~~~~~s~~~~g~~~s~~~~~~~i~~~-~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~-----~-~~~~~~~l~G 106 (394)
T PRK03699 34 AEYFNLPVSSMSNTFTFLNAGILISIF-LNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSL-----A-LFSIAMFVLG 106 (394)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchH-----H-HHHHHHHHHH
Confidence 356899999999999999999999855 78999999999999999998888888777765432 2 2335566777
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...+.....+.+..|+++||+.++..++..+++..++|.+.+
T Consensus 107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 152 (394)
T PRK03699 107 VVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAA 152 (394)
T ss_pred HhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888899999999999999999998888888888887643
No 44
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.18 E-value=3.5e-10 Score=88.15 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=99.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..++|.|+.++++..+.+.+...+.+. +.+++.||+|+||++..+...+.+..+..++..+. | .+...+.+.+
T Consensus 40 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G 112 (406)
T PRK15402 40 VEDFNAGAEWVPTSMTAYLAGGMFLQW-LLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI-----E-QFTLLRFLQG 112 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHHH
Confidence 357899999999999999999999855 77999999999999999998888887776655432 2 2335566777
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|.....+++..|+++|++.+|+.+....++..+||.+++
T Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 158 (406)
T PRK15402 113 IGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA 158 (406)
T ss_pred hHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888899999999999999999999998899999998754
No 45
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3.2e-10 Score=88.86 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=109.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|.|..+.|+..+.++....+. ..+...+.+|+.||+++...+.++..+-++..++.++ ..+...+++.
T Consensus 39 iA~dl~vs~~~aG~lis~yAl~~ai~-ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f------~~Ll~aR~~~ 111 (394)
T COG2814 39 IAADLGVSEGAAGQLITAYALGVALG-APLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSF------AVLLLARALA 111 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHH
Confidence 45689999999999999999999999 7788999999999999999999999998888777653 3566888998
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..+..++...++..+.+|||+||++.|+..+..+++..+|.++|.
T Consensus 112 g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999998874
No 46
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.17 E-value=1.1e-10 Score=88.67 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=95.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
.....+|+|..|+|+..+.+.+...+.|. +.+++.||+|+|+++..+..+..++.+.+.+..+. | .+...+.+
T Consensus 28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~ 100 (377)
T TIGR00890 28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMP-VGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL-----A-ALYLTYGL 100 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhh-hhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH-----H-HHHHHHHH
Confidence 34457899999999999999999999965 77999999999999999999999988877766542 2 23345567
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
.+++.+..++.....+.+..| |+||+++|+.++...++-.+++.
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~ 144 (377)
T TIGR00890 101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSP 144 (377)
T ss_pred HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHH
Confidence 777888777777888888876 68999999999988888766443
No 47
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.17 E-value=4.9e-10 Score=89.29 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=101.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...+|+|..+.++..+...+...+.+ ++.+++.||+|+|+.+..+...+.+..+.+.+..+. | .+...+.+.+
T Consensus 47 ~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G 119 (496)
T PRK03893 47 QGEFGLTTVQAASLISAAFISRWFGG-LLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGY-----W-TLFIARLVIG 119 (496)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHHH
Confidence 35689999999999999999999986 577999999999999999999888888777765432 2 2345667778
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...+....++.+..|+|+||+.+|+..+..+++..++|.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 120 MGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999997654
No 48
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.17 E-value=6.3e-10 Score=84.24 Aligned_cols=117 Identities=18% Similarity=0.095 Sum_probs=95.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
+|+++.+.|+.....++...+.+. +.+++.||+++++....+.....+......+... + .|. ......+..++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~g~~~ 315 (365)
T TIGR00900 242 LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP--N--FPL-FLVLWFAIGVGY 315 (365)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch--h--HHH-HHHHHHHHHHHH
Confidence 789999999999999999988854 6789999999999998887766666665554432 1 122 233455667788
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+...|...+++.+.+|+|+||+++|+.++...++..+||.++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g 358 (365)
T TIGR00900 316 GPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG 358 (365)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999998876
No 49
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.16 E-value=5.7e-10 Score=87.05 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=98.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS 96 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (138)
.+..+.|++.+.+.+...+.+. +.+++.||+|+|+++..+..++.++.++..+.....+ +..+...+.+.+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~-~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~~~ 143 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGAL-FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS---VEMLIVGRVLLGIGVGI 143 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHH-HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHhhhhH
Confidence 6699999999999999999955 7899999999999999999988888777754332211 11344677888888898
Q ss_pred HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 97 IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 97 ~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
..+....++.+..|+++||+++|+.+....+|..+||.++
T Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 50
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.16 E-value=4.8e-10 Score=88.44 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS 96 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (138)
++.++.|...+..++..++.|. ..+++.||+|+|+++..+.....+.+..+...... ...+..+.....+..++.+.
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~--~~~~~~l~l~~~l~g~~~~~ 324 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFIL-TIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE--YFGYALLFLSMIVYGCAFDF 324 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc--hhhHHHHHHHHHHHHHHHHH
Confidence 5568889999999999999964 77999999999999999999888876655542110 00112233455666777777
Q ss_pred HHHHHHHHHhhcccchhhhhhhhHHH-HHHHHHhhHccCCcCC
Q 043916 97 IITRLFLLQNRAVEQHQRGAANGLVM-TVVSLTKTAGPAVRGA 138 (138)
Q Consensus 97 ~~p~~~~li~~~~p~~~~G~~~G~~~-s~~sl~r~igP~i~G~ 138 (138)
..|....++++.+|+++||+++|+.+ ...+++.++||.++|+
T Consensus 325 ~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~ 367 (418)
T TIGR00889 325 FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV 367 (418)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888999999999999999999997 5789999999998873
No 51
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.16 E-value=1.6e-10 Score=88.35 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=88.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITR-IAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
..++|+|..++|++.+.+.+...+.|. +.+++.||+|+||.+. .+.........++++.++. |. +.....+.
T Consensus 25 ~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~-l~~~~~~~ 97 (375)
T TIGR00899 25 SEEVRARPAMIGLFYTGSAIVGIAVSQ-LLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNY-----FL-LLVLGVLL 97 (375)
T ss_pred HcccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchH-----HH-HHHHHHHH
Confidence 345899999999999999999999976 5689999999988655 4555555555555554331 22 22334444
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhh--hhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAA--NGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~--~G~~~s~~sl~r~igP~i~G 137 (138)
..+.+...|...++..+..|+++|++. +|..++..+++..+||.++|
T Consensus 98 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~ 146 (375)
T TIGR00899 98 SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF 146 (375)
T ss_pred HhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence 555566778888888888887777654 78889999999999998875
No 52
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.15 E-value=1.7e-10 Score=92.57 Aligned_cols=118 Identities=11% Similarity=0.037 Sum_probs=99.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
+++|+|..+.|++.+.+.....+.+. +.+++.|| +|+||+...+..+..+++.++++..+. + .+...+.+..
T Consensus 41 ~~lg~s~~~ag~~~~~~~~~~~~~~~-~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~-----~-~~~~~~~l~g 113 (475)
T TIGR00924 41 AGLGFSQEQAFIIFGAYSALVYLLTS-VGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP-----D-LIFYGLGTIA 113 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccH-----h-HHHHHHHHHH
Confidence 46999999999999999999999955 77999999 899999999999999998888765431 1 2334555667
Q ss_pred HHHHHHHHHHHHHHhhcccchh---hhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQ---RGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~---~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|...+++++..|+++ |+++.++......+|..+||.++|
T Consensus 114 ~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g 162 (475)
T TIGR00924 114 VGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG 162 (475)
T ss_pred hccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence 7888888999999999998754 899999999999999999998875
No 53
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.14 E-value=1e-09 Score=85.27 Aligned_cols=117 Identities=8% Similarity=-0.034 Sum_probs=97.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
++|.++.++|..++...+..++. ..+.+++.||+|+++++.++.....+.+.++++.++. | .+.....+..+.
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~-~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~q~l~g~~ 306 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIII-FAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF-----P-LIFLLQILHCGT 306 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHH-HHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH-----H-HHHHHHHHHHHH
Confidence 47999999999999766666655 7788999999999999999999999998888765442 2 233456788888
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHH-HHHHHhhHccCCcCC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMT-VVSLTKTAGPAVRGA 138 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s-~~sl~r~igP~i~G~ 138 (138)
.+...++...++++. |+++|++.+|+.++ ...++.++||.++|+
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988 99999999999864 567999999998874
No 54
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.14 E-value=8.8e-10 Score=85.58 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=88.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLT-SYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
+.|++++++|++....+....+.+.++.+++.||+|++|....+......... .............+. +.....+...
T Consensus 237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 315 (390)
T TIGR02718 237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV-AWSCSAFGSL 315 (390)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH-HHHHHHHHHH
Confidence 47999999999999999888877788999999999999999887765522222 111111000000111 1122234445
Q ss_pred HHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 93 LSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
..+..++...+...+..++ +++|+.+++.++..++++.+||.++|+
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~ 362 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGY 362 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888788776 899999999999999999999998873
No 55
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.13 E-value=1.1e-09 Score=89.07 Aligned_cols=122 Identities=18% Similarity=0.115 Sum_probs=102.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
+.-|+..+|++.+...+...++ ..+.+.+.||+++||+...+..+..+..+.++..........|. ++...++.+++.
T Consensus 40 lt~S~~~valv~~a~~LP~~Ll-sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~-Ll~~~fl~g~~~ 117 (524)
T PF05977_consen 40 LTGSPLMVALVQAASTLPILLL-SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWL-LLILTFLLGIGS 117 (524)
T ss_pred HhCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHHH
Confidence 4568999999999999999988 66889999999999999999988877666666554432222354 345567778899
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
++..|+.++++.+.+|+|+..++|++.+....++|.+||.+||.
T Consensus 118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 118 AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999983
No 56
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.13 E-value=2.7e-10 Score=74.90 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043916 28 ISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNR 107 (138)
Q Consensus 28 ~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~ 107 (138)
..++...+. ....+++.||+|+|+.+..+.....+..+.+....+. |. +.....+..++.+...|.....+.+
T Consensus 6 ~~~~~~~~~-~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIY-SPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI-----TV-LIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred eehhHHHHH-HhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH-----HH-HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345556666 4477899999999999999888887777666544321 22 2244566677778888889999999
Q ss_pred cccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 108 AVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 108 ~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..|+++|++.+|+.++...++..++|.++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGG 108 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence 999999999999999999999999998876
No 57
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.13 E-value=1.4e-09 Score=84.50 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=91.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
+.|+++.+.|...+..++...+.+. +.+++.||+|+++....+.......+...++.+.. +.. .....+...+
T Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~g~~ 321 (406)
T PRK11551 249 GQGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF-----AGM-LLAGFAAGLF 321 (406)
T ss_pred hCCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH-----HHH-HHHHHHHHHH
Confidence 4689999999999999999998854 78999999999999888766666655555443321 221 1223334445
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
.....+...+++.+.+|+++||+.+|+.++...++..+||.++|+
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 366 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence 555667888999999999999999999999999999999999874
No 58
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.12 E-value=1.1e-09 Score=82.25 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=99.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII-ITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
+|.+..+.++..+..++...+.+ .+.+++.||+++|+ .+..+.....+....++..++. + .+.....+...+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~~~g~~ 278 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL-----A-LLLVALLLLGFG 278 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHHH
Confidence 58899999999999999999995 47788999999999 9999999888888877765431 2 233455677788
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...|...+++++..|+|+||+.+|+.+....++..++|.+.|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG 322 (352)
T ss_pred HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999998765
No 59
>PRK11043 putative transporter; Provisional
Probab=99.12 E-value=8.8e-10 Score=85.70 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=98.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...+|.|+.++|+..+...+...+.+. +.+++.||+|+|+++..+..+..+......+..+. | .+...+.+.+
T Consensus 33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G 105 (401)
T PRK11043 33 QADLQTSASAVSASLSLFLAGFALGQL-LWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA-----A-QLLVLRFVQA 105 (401)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHHH
Confidence 356899999999999999999999965 77999999999999999998888777766654432 2 2334556667
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...+...+++.+..|++++++.++..++...++..+||.++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 151 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA 151 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766677777889999999999999999999999999999998765
No 60
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.10 E-value=1.4e-09 Score=91.63 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=100.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|++..+.|++.+...+..++.+ ++.+++.||+|+|+++.++..++.++.++.++.+.. + .+.+.+++.++
T Consensus 195 ~~~gls~~~~g~l~s~~~lG~iiG~-li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~-----~-~llv~R~l~G~ 267 (742)
T TIGR01299 195 KDLCIPDSGKGMLGLIVYLGMMVGA-FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY-----G-FFLFCRLLSGF 267 (742)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhH-----H-HHHHHHHHHHH
Confidence 4578999999999999999999985 488999999999999999999888887777665432 2 34456778888
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+.+...|...+++++.+|+++||+..|+.+...++|.+++|.++
T Consensus 268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999888643
No 61
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.10 E-value=2.5e-10 Score=89.40 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=97.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.++.++.|.|++.+...+...+.+. +.+++.||+|+|++...+..+..+.+..++..........| .+...+.+..++
T Consensus 46 ~~~~s~~~~g~~~~~~~l~~~~~~~-~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~ 123 (417)
T PRK10489 46 MMTGSTLQVGLSVTLTGGAMFIGLM-VGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLL-AIYLLGLWDGFF 123 (417)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHH
Confidence 3567999999999999999999965 77999999999999988888777766655432211111112 233456677778
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...|+..+++.+..|+|+|++++|+.+...+++..+||.++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g 167 (417)
T PRK10489 124 GSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG 167 (417)
T ss_pred HHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 88888889999999999999999999999999999999999876
No 62
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.09 E-value=4.4e-10 Score=88.82 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=95.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
+|.|+.|+|+..+.+.+...+.+. +.+++.||+|+|+.+..+..+..+....+......... ...+...+.+..++.
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~g~~~ 132 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSS--IAIMFVLLFLNGWFQ 132 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhh-ccchhhhccCCceehHHHHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHh
Confidence 589999999999999999999855 77999999999999999988888887766554321111 112334455667777
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+..+|.....+.+..|+++||+++|+.++...++..++|.+.
T Consensus 133 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 133 GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 777888888999999999999999999999999999888653
No 63
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.09 E-value=1.6e-09 Score=85.42 Aligned_cols=118 Identities=8% Similarity=-0.041 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHHHHHH---HHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLL---FSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK 90 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~---~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~ 90 (138)
+.+..+.+......+.... +.+ ++.+++.||+|+||.+..+...+.+..++..+.++.. +......+...+.++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~ig~-~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 134 (432)
T PRK10406 56 GNTTTQLLQTAGVFAAGFLMRPIGG-WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQ 134 (432)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence 4556655555554444444 664 4789999999999999999999999888876654321 011123456788899
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
+++.+..+|...+++++..|+++||+..++.+.....|..+++.
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887777777664
No 64
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.09 E-value=2e-09 Score=84.32 Aligned_cols=116 Identities=13% Similarity=-0.011 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS 96 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (138)
.++.++|++++..+......+....++..||++.++....+..+..+.+.++++.+.. +. +.....+...+...
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~-~~~~~~l~~~g~~~ 313 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNL-----QQ-LFTLICLFYIGSII 313 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhH-----HH-HHHHHHHHHHHHHH
Confidence 3788999999999888887777777777788887777777777777766655544321 21 12233445667778
Q ss_pred HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 97 IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 97 ~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
..|...+++.+.+|+++||+++|+.+....++..+||.++|+
T Consensus 314 ~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 314 AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence 889999999999999999999999999999999999999873
No 65
>TIGR00898 2A0119 cation transport protein.
Probab=99.08 E-value=6.9e-10 Score=88.75 Aligned_cols=120 Identities=11% Similarity=0.064 Sum_probs=102.1
Q ss_pred CCCCCCCC---hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916 11 KYGGLSYS---TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS 87 (138)
Q Consensus 11 ~~gglg~s---~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 87 (138)
...++|++ +.+.|+..+.+.+...+.+ ++.+++.||+|+|+++..+..+..+..++..+..+. | .+...+
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~-~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~r 187 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGS-FVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNY-----T-VFLVFR 187 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHH-HhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccH-----H-HHHHHH
Confidence 44578888 8999999999999999995 478999999999999999999888887776655432 2 344667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+.+++.+...|...+++++.+|+++|+++.++.+...++|..++|.+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999999999999999999999987653
No 66
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.08 E-value=4.7e-09 Score=80.33 Aligned_cols=111 Identities=8% Similarity=0.075 Sum_probs=86.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG------FSLALFINCASV 88 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~l~~~~~ 88 (138)
+|++++++|.+....+....+.+.++.+++.||+|+|+.+..+..+..+....+.+...... ...| .+.....
T Consensus 239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 317 (356)
T TIGR00901 239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL-MLFLTIT 317 (356)
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH-HHHHHHH
Confidence 78999999999999997777777889999999999999988888877766654443311000 0112 2334455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS 126 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s 126 (138)
+..++.+...+...+++++.+|+|+||+.+|+.++..+
T Consensus 318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 66788889999999999999999999999999998765
No 67
>TIGR00895 2A0115 benzoate transport.
Probab=99.08 E-value=4.1e-09 Score=80.69 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=88.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++.+.++..+..++...+. ..+.+++.||+++++............+.+..... + .+. ......+..+
T Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~g~ 350 (398)
T TIGR00895 278 VELGFSLSLAATGGALFNFGGVIG-SIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF---S--PTL-LLLLGAIAGF 350 (398)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh---C--HHH-HHHHHHHHHH
Confidence 457899999999999999999888 55889999999988554444433333322222111 1 121 1233445566
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+.+...|...+++.+..|+++||+++|+.++...++..+||.++|+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 7777888999999999999999999999999999999999999874
No 68
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.08 E-value=9e-10 Score=86.22 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=91.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
+|.++.+.|++.+..++...+.+. +.+++.||.++++....+.....+.++++.+..+. + .+.....+.+.+.
T Consensus 254 ~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~g~~~ 326 (417)
T PRK10489 254 WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMW-----I-LAVLCLALFGYLS 326 (417)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHHHHHHHHHHHHHHHHccchH-----H-HHHHHHHHHHHHH
Confidence 789999999999999999888854 67899999888888888777776666655443221 2 2223344555666
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+...+...+++.+.+|+|+||+++|+..+...++..+||.+.|+
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~ 370 (417)
T PRK10489 327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG 370 (417)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 66667778899999999999999999999999999999988763
No 69
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.07 E-value=9.1e-10 Score=84.33 Aligned_cols=118 Identities=16% Similarity=0.061 Sum_probs=93.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|.+|.|+..+.+.+...+.+. +.+++.||+|+||.+..+......+.... ..++ .+ .+...+.+.
T Consensus 26 l~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~-----~~-~l~~~~~~~ 97 (355)
T TIGR00896 26 IRSALGMSFSVAGLLTALPVLCFAVLAP-LAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG-----TA-LLFAGTALI 97 (355)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc-----HH-HHHHHHHHH
Confidence 3567999999999999999999999954 78999999999999999888777666544 2221 12 233556677
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+...+....++.+..| ++||+++|+.+....++..++|.+++
T Consensus 98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~ 143 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATV 143 (355)
T ss_pred HHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888875 68999999999999999988886643
No 70
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.07 E-value=6.5e-10 Score=85.51 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=86.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++.+.+++.+..++...+. .++.+++.||+|+|+.+..+.....+......... .. .+. +.....+...
T Consensus 267 ~~~g~s~~~~~~~~~~~~~~~~~g-~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~ 340 (405)
T TIGR00891 267 ADLGLSPHTVANIVVFSNIGAIVG-GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--AN--VAV-LGLGLFFQQM 340 (405)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--Cc--hHH-HHHHHHHHHH
Confidence 347899999999999999999888 45789999999999998887765533222111111 11 121 1222233344
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
......+....++++.+|+|+||+++|+.++...++..+||.++|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g 385 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385 (405)
T ss_pred HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444455667788999999999999999999999999999999876
No 71
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.05 E-value=1.2e-09 Score=86.67 Aligned_cols=119 Identities=9% Similarity=0.004 Sum_probs=94.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
... |+|+.++|+..+...+...+.|. +.+++.||+|+|+++..+..++.+....+.+....... +..+...+.+.+
T Consensus 56 ~~~-g~s~~~~g~~~~~~~i~~~~~~~-~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~g 131 (452)
T PRK11273 56 VEQ-GFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCG 131 (452)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHHHHh-hhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccccc--HHHHHHHHHHHH
Confidence 344 89999999999999999999966 77999999999999999999988888777665321111 122334556667
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh-HccC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT-AGPA 134 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~-igP~ 134 (138)
++.+...|.....+.+..|+|+||+.+|+.+....++.. .+|+
T Consensus 132 i~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 132 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 778878888888888999999999999999988888864 4554
No 72
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.05 E-value=1.5e-09 Score=82.44 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=91.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++|++.++.+...+..++...+.+. +.+++.||+|+|+....+.....+...++++..... .+. +.....+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g~ 307 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN---DVL-FLATVALVFF 307 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch---hHH-HHHHHHHHHH
Confidence 34778899999999999999998854 779999999999999998888888777666543221 111 1112223344
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...+....++++..|+|+||+.+|+.+....++..+||.+.|
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 352 (377)
T TIGR00890 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS 352 (377)
T ss_pred HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 444455666778899999999999999999999999999998765
No 73
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.05 E-value=4.1e-09 Score=84.75 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=98.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
.+.+..+.+++.+...+...+.+. +.+++.||+|+|+++..+..++.+..++..+............+...+.+.+++.
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~-~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQL-FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH
Confidence 456788899999999999999955 7899999999999999998888887776665432110001223557788888999
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+...|....++++.+|+++||+..++.+....+|..+||.++
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887654
No 74
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.05 E-value=3.4e-09 Score=84.92 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=89.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...++|+|..|+|++.+.+.+...+.|. +.+++.||+|+|++...+...+.+..++.++.++. + .+...+++.
T Consensus 62 l~~~~gls~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-----~-~l~~~r~l~ 134 (476)
T PLN00028 62 IRDNLNLTKSDIGNAGIASVSGSIFSRL-AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-----T-GFIAVRFFI 134 (476)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHH
Confidence 3457899999999998888888888865 77999999999999999999888888877765542 2 233445565
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
+++.+... ....++++..|+++||+++|+.++...++..+++.+
T Consensus 135 G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~ 178 (476)
T PLN00028 135 GFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL 178 (476)
T ss_pred HHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence 66665443 356678999999999999999987777776666543
No 75
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.04 E-value=1.1e-09 Score=87.16 Aligned_cols=119 Identities=10% Similarity=0.004 Sum_probs=94.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...+|+|.+++++..+.+.+...+.+. +.+++.||+|+|+++..+..++.+..++..+.++. |......+.+.+
T Consensus 46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~l~G 119 (455)
T TIGR00892 46 QQIFQATYSETAWISSIMLAVLYAGGP-ISSILVNRFGCRPVVIAGGLLASLGMILASFSSNV-----IELYLTAGFITG 119 (455)
T ss_pred HHHhCcchhHHHHHHHHHHHHHHHhhH-HHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHH
Confidence 457899999999999998888887744 67999999999999999998888887777665432 222222335556
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...+....++.+..| ++||+++|+.++...++..++|.++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~ 164 (455)
T TIGR00892 120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQ 164 (455)
T ss_pred hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6666666667788888885 79999999999999999999988765
No 76
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.03 E-value=3.9e-09 Score=81.81 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=90.7
Q ss_pred CCCCChhH-----HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916 14 GLSYSTKN-----VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASV 88 (138)
Q Consensus 14 glg~s~~~-----ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 88 (138)
.+|++..+ +|++++...+...+.+. +.+++.||+|+|+.+..+.........++.+.++. |. +...+.
T Consensus 43 ~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~ 115 (408)
T PRK09874 43 QLGVTGHSALNMWSGLVFSITFLFSAIASP-FWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNI-----WQ-FLILRA 115 (408)
T ss_pred HhCCccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhH-----HH-HHHHHH
Confidence 46676554 58999999999999855 67999999999999999998888877766654331 22 234455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+++.+ ..|....++.+..|+|+||+++|+.+....++..+||.++|
T Consensus 116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 163 (408)
T PRK09874 116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG 163 (408)
T ss_pred HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565544 45778888899999999999999999999999999998765
No 77
>PRK15075 citrate-proton symporter; Provisional
Probab=99.02 E-value=2e-09 Score=85.02 Aligned_cols=125 Identities=5% Similarity=-0.012 Sum_probs=91.7
Q ss_pred CCCCCCChhHHHHHHH-H--HHHHH---HHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHH
Q 043916 12 YGGLSYSTKNVGQVLA-I--SGFNL---LFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLA--LFI 83 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~-~--~g~~~---~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~l 83 (138)
..+++.+..|.+.... . .+... .+.|. +.+++.||+|+||.+..+..++.+..+++.+.++......+ ..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~-~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 120 (434)
T PRK15075 42 AKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAI-VLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLV 120 (434)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3467888877665432 2 12212 23434 56999999999999999999999999888877653211001 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 84 NCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+++.+++.+...|....++++.+|+|+||+.+|+.+...+++..+||.+++
T Consensus 121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888988999999999999999999999888888777776543
No 78
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.98 E-value=2e-09 Score=86.81 Aligned_cols=119 Identities=9% Similarity=-0.042 Sum_probs=98.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.++|++.++.+++.+.+.....+. ..+.+++.|| +|+||++..+..++.++...+.+.... +..+...+.+..
T Consensus 43 ~~lg~~~~~a~~i~~~~~~~~~~~-~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-----~~ll~~~~~l~~ 116 (489)
T PRK10207 43 KQLGFSQEQAFITFGAFAALVYGL-ISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-----PDLIFIALGTIA 116 (489)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH-HhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHH
Confidence 358999999999999988877777 4488999999 999999999999999998877665331 122335667778
Q ss_pred HHHHHHHHHHHHHHhhcccch--hhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQH--QRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~--~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|...+++.+..|+| +|++..++......+|..+||.++|
T Consensus 117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g 164 (489)
T PRK10207 117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP 164 (489)
T ss_pred hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 888989999999999999876 5588899999999999999998776
No 79
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.98 E-value=4.4e-09 Score=83.29 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=94.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|+++.+.|+.....++...+. ..+.+++.||+|+|+....+..+.......+.+... ++...+. +.....+.+++
T Consensus 285 ~~g~s~~~~g~~~~~~~~~~~~~-~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~g~g 361 (485)
T TIGR00711 285 VLGYTALQAGLHILPVGLAPMLS-SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-PDTPFLA-IALPQFIRGFG 361 (485)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-CCCCHHH-HHHHHHHHHHH
Confidence 47999999999999999999888 457799999999999999888877777665542111 1111121 22345567778
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..++.......+..|+|++|+++|+.+....++.++||.+.|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777788888899999999999999999999999998765
No 80
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.98 E-value=5.9e-09 Score=78.69 Aligned_cols=118 Identities=23% Similarity=0.171 Sum_probs=93.0
Q ss_pred CCCCCCC-hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 12 YGGLSYS-TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 12 ~gglg~s-~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...+|++ ..+.++..+..++...+. ..+.+++.||+++++..........+..+.+.+..... ...|.. ....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 309 (352)
T PF07690_consen 234 QEVLGFSGPSQAGLLFSIFGIVGIIG-SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSS-SPVWLI--IALFLI 309 (352)
T ss_dssp CHHHHCCTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHC-HHHHHH--HHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHH--HHHHHH
Confidence 3457888 899999999999999998 55789999999988877777777766666555444321 111221 234455
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP 133 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP 133 (138)
+++.+...|....++.+.+|+|+||+++|+.++..+++..+||
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6788888999999999999999999999999999999999998
No 81
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3.9e-10 Score=88.59 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=106.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.....++|..|+|++.+.+.+.+-+.+. +.+.+.||.++|+...+++.+.++..+++.+.+.+ ..+....++.
T Consensus 55 l~e~~~lsk~~lG~i~s~f~i~YG~sKf-~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~------~~~~~l~~ln 127 (448)
T COG2271 55 LIEDGGLSKTQLGILGSAFSITYGVSKF-VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL------FLFAVLWVLN 127 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH------HHHHHHHHHH
Confidence 3345679999999999999999999976 78999999999999999999999999999887643 2345677788
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+...++.+|.+...+.++.|++|||+..+++++.-.+|-++.|++.
T Consensus 128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 9999999999999999999999999999999999999999888765
No 82
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.97 E-value=4.1e-09 Score=91.58 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=93.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916 18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI 97 (138)
Q Consensus 18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 97 (138)
+....+++.+.+.+...+.+. +.+++.||+|+|+++.++..+..+..++..+...... .| .+.+.+++.+++.+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~-~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~ 120 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSS-PAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW--FW-LAFAVTFLLGAQSAIY 120 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc--HH-HHHHHHHHHHHHHHhh
Confidence 345578888898888888855 7799999999999999988776666655544322111 12 3446777888899999
Q ss_pred HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 98 ITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 98 ~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.|+..+++.+.+|+++||+++|+.++..+++..+||.++|
T Consensus 121 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~ 160 (1146)
T PRK08633 121 SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFS 160 (1146)
T ss_pred chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 83
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.97 E-value=5.3e-09 Score=81.49 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
...+|+|+.++|+..+...+.....+.+..++ .||+|+||.+ ..+.....+...++++.... |..+.....+
T Consensus 43 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~- 115 (393)
T PRK15011 43 TDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY-----FVLLFVGVFL- 115 (393)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHH-
Confidence 44689999999999888877777666666666 9999999864 55556555665555554321 2222222222
Q ss_pred HHHHHHHHHHHHHHHhhcccchhh--hhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQR--GAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~--G~~~G~~~s~~sl~r~igP~i~G 137 (138)
........|....++.+..|+++| +..+|..+...+++..+||+++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~ 164 (393)
T PRK15011 116 SSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY 164 (393)
T ss_pred HHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334455678888888887776544 56678999999999999999875
No 84
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.96 E-value=1.1e-08 Score=78.30 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=87.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-----hhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-----GPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINC 85 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-----g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 85 (138)
..++|+|.+|+|+.... ++...+ +. +.+++.||+ |+||.+ ..+.....+.+..+.+..... ..|... .
T Consensus 15 ~~~~g~s~~~~g~~~~~-~~~~~~-~~-~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~--~l~~l~-~ 88 (356)
T TIGR00901 15 LRSKNVSLKTIGFFSLV-GLPYSL-KF-LWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST--DLPLLA-G 88 (356)
T ss_pred HHHcCCCHHHHHHHHHH-HHHHHH-HH-HHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch--hHHHHH-H
Confidence 34689999999999655 555554 44 778889997 888865 556666666655555442211 123222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 86 ASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 86 ~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+...+.+...|+..+++.+.+|+|+||+++|+.+...++|..++|.+++
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456777778999999999999999999999999999999999998764
No 85
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.96 E-value=1.6e-09 Score=86.39 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++.++|++.+..++...+.+. +.+++.||+|+++.+..+..+..+..+....... . ..+. +.....+...
T Consensus 304 ~~~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~ 378 (496)
T PRK03893 304 TDLGYDPHTVANVLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG--A-NVWV-LGLLLFFQQM 378 (496)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc--c-HHHH-HHHHHHHHHH
Confidence 46899999999999999999999854 8899999999999988877655544432222111 1 1121 1122222222
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
......+....++.+..|+|+||+.+|+.++...++..+||.++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH
Confidence 222234556678889999999999999999999999999998876
No 86
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.96 E-value=6.3e-09 Score=79.41 Aligned_cols=119 Identities=8% Similarity=-0.046 Sum_probs=90.5
Q ss_pred CChhHHHHHHHHHHHHH-----HHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNL-----LFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF--SLALFINCASVM 89 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~-----~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~~~~~ 89 (138)
.+.++++...+...... .+. .++.+++.||+|+||++..+..+..+...+.++..+.... +....+...+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 105 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLG-AIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLI 105 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhH-HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHH
Confidence 45677776665432222 233 3577999999999999999999999988888876654311 111234566778
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.+++.+...|....++.+..|+|+||+.+++.+....+|..++|.++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 152 (394)
T TIGR00883 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV 152 (394)
T ss_pred HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999988753
No 87
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.95 E-value=4.9e-09 Score=85.33 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=98.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|.++..+|++++..|+..++. .++.+++.+|++..+++..+...++..++.+.+..+. |.. ...+++.+.
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~G-al~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~-----~~~-~~~l~l~G~ 319 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILG-ALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF-----WLA-LIALFLAGA 319 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH-----HHH-HHHHHHHHH
Confidence 358999999999999999999998 6688999999999999999998888887777665442 332 234455566
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.........+.+-+.+|++.||+++++.++....+..+|..++|
T Consensus 320 ~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G 364 (524)
T PF05977_consen 320 AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG 364 (524)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788899999999999999999999999999999988776
No 88
>PRK10504 putative transporter; Provisional
Probab=98.95 E-value=1.3e-08 Score=80.76 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=94.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|.++.+.|+.+....+...+. ..+.+++.||+|+|+++..+.....+...++.+..... ..+. +....++.+++
T Consensus 291 ~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~ 366 (471)
T PRK10504 291 GLGFSPFHAGLMMIPMVLGSMGM-KRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYYL-LPFVLFLQGMV 366 (471)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHHH-HHHHHHHHHHH
Confidence 57899999999999888888777 45779999999999999988887777666555432111 1121 12334555677
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..++..+.++.+.+|+|++|+.+|+.+....++.++||.++|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 367 NSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999998876
No 89
>PRK12382 putative transporter; Provisional
Probab=98.94 E-value=7.4e-09 Score=80.30 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITR 100 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 100 (138)
+.++.....++..++.+. ..+++.||+|++|....+..+..+.+.++++..+. +. ......+...+.+...|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~g~~~~~~~~~ 322 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRV-LFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA-----WV-ALAGAALTGAGCSLIFPA 322 (392)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH-----HH-HHHHHHHHHHHHHhHHHH
Confidence 456667777877777754 67899999999999998888888877766554321 21 223445556777777888
Q ss_pred HHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 101 LFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 101 ~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+.+.+..|+|+||+++|+.++...++..+||.++|
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999998776
No 90
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.93 E-value=2.4e-09 Score=83.92 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=90.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
..++++|+|+.|++++.+..-+...+.-+ +++.+.||||.|+++..+..+..+-.....++...++ .|..+.... +
T Consensus 39 ~i~~~~~LS~~q~~ll~aiPil~GallRl-~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~--~~~ll~~gl-l 114 (417)
T COG2223 39 FIKSDFGLSEGQKGLLVAIPILVGALLRL-PYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS--TWQLLVIGL-L 114 (417)
T ss_pred hhccccCCCHHHHHHHHHHHHHHhHHHHH-HHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc--hHHHHHHHH-H
Confidence 34589999999999999999999999966 8899999999999999999886665555555444322 244444343 3
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHH---HHHHHHhhHccCC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVM---TVVSLTKTAGPAV 135 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~---s~~sl~r~igP~i 135 (138)
.++++ ..|...+..+|+..|||+||.++|++. ...++.+.++|.+
T Consensus 115 ~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v 162 (417)
T COG2223 115 LGLAG-ASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLV 162 (417)
T ss_pred Hhccc-ceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHH
Confidence 34333 355678999999999999999999985 4445555666654
No 91
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.92 E-value=1.3e-08 Score=77.81 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=85.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|.++.+.|+............+ .+.+++.||+|+|+....+.......+..+.+.+. .|. +.....+...
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~ 300 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS-----LWA-LLMLQLLNAI 300 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHH
Confidence 3478999999998888777666664 47789999999999888877665555544443221 122 2233445566
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...|.....+.+..|+ ++|+++|+.+....++..+||.++|
T Consensus 301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g 344 (375)
T TIGR00899 301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGG 344 (375)
T ss_pred HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777888887765 6789999999999999999998876
No 92
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.92 E-value=8.7e-09 Score=89.90 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH--HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL--SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI 97 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 97 (138)
...++..+.+.+..++++. +.+++.||+|+|++.+..... ......++.+. .. ..| .++..+++++++.++.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~-~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---~~-s~~-~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSA-LAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---LN-SVP-LLFAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hHH-HHHHHHHHHHHHHHhh
Confidence 4578888889999998854 779999999999976542222 21111111111 01 123 3557788999999999
Q ss_pred HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 98 ITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 98 ~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
.|+..+++.+..|+++|+++||+.++..+++..+||+++|+
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999873
No 93
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.92 E-value=1e-08 Score=80.12 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=85.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-----hhHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-----GPII-ITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS 87 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-----g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 87 (138)
+.|+|.+|||++....- . .+.|. +.+++.||+ |+|| ....+.....+.+..+.+.... ...|.. ....
T Consensus 28 ~~g~~~~~ig~~~~~~~-~-~~~~~-l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~--~~~~~l-~~~~ 101 (402)
T PRK11902 28 VEGLDIQTIGFFSLVGQ-A-YIFKF-LWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPH--AALWPL-AGLA 101 (402)
T ss_pred HcCCCHHHHHHHHHHHH-H-HHHHH-HHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCcc--chHHHH-HHHH
Confidence 35999999999855444 3 35654 779999999 7765 6777777776666655443211 112332 3333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.+.....+...|...+++.+..|+|||++.+++.+...+++..+|+.++
T Consensus 102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 4456777888899999999999999999999999999999999988754
No 94
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.91 E-value=2e-08 Score=80.63 Aligned_cols=107 Identities=9% Similarity=0.009 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 27 AISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLA--LFINCASVMKNVLSVSIITRLFLL 104 (138)
Q Consensus 27 ~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~l 104 (138)
+..-+...+.+. +++++.||+|+|+++..+..++.++.+++.+.++....-.| ..+...+++++++.+..+|...++
T Consensus 64 ~~~~l~~~ig~~-~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 64 SVPFLIRPLGGL-FFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 444455666644 77999999999999999999999999888877654311112 246678899999999999999999
Q ss_pred HhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 105 QNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 105 i~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
+++..|+++||+..|+.+....+|-.+|+.
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~ 172 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAG 172 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877777777663
No 95
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.91 E-value=2.3e-08 Score=80.44 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=97.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
...|+|+.+.|..+...++...+. ..+.+++.||+|+|+....+..+..+++..+.......+ .|. ......+.++
T Consensus 288 ~v~g~s~~~ag~~~~~~~~~~~~~-~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~-~~~~~~l~G~ 363 (495)
T PRK14995 288 FVHGLSPLEAGMFMLPVMVASGFS-GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQ--QWQ-AWGLMALLGF 363 (495)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCc--hHH-HHHHHHHHHH
Confidence 347999999999999999999888 568899999999999998888887777665554322111 122 2234556688
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...+.....+.+.+|+|++|++.|+.+....+|.++|+.+.|
T Consensus 364 g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 364 SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999999998765
No 96
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.90 E-value=2.5e-08 Score=84.08 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITR 100 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 100 (138)
.........++..++.+ ++..++.||+|+|+++..+..+.++..+++++.... +..+ ....+...+.+..++.
T Consensus 596 ~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~-----~~ll-~~~~l~g~~~~~~~~~ 668 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE-----SAMI-ALLCLFGGLSIAAWNA 668 (742)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH-----HHHH-HHHHHHHHHHHHHHHH
Confidence 45566667777777774 477999999999999999999988888777665432 1112 2223434555667788
Q ss_pred HHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 101 LFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 101 ~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+++.+..|.++||+.+|+.++...+|.++||.++|
T Consensus 669 ~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g 705 (742)
T TIGR01299 669 LDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFG 705 (742)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 97
>PTZ00207 hypothetical protein; Provisional
Probab=98.90 E-value=3.5e-08 Score=81.29 Aligned_cols=117 Identities=10% Similarity=0.098 Sum_probs=92.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-GFSLALFINCASVM 89 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~ 89 (138)
.+..+|+|..|++++.+. |......|+ +.+++.||+|+|+++.++...+.++++++++...-. ....|. +.+.+.+
T Consensus 53 L~~~lgls~~~l~~i~sv-g~~~g~~~l-p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-l~l~r~l 129 (591)
T PTZ00207 53 MQARYNLTQRDLSTITTV-GIAVGYFLL-PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-LSVYNGL 129 (591)
T ss_pred HHHHhCcCHHHHHHHHHH-HHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-HHHHHHH
Confidence 345789999999999876 555666766 569999999999999999999999999888752100 001232 3455667
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i 131 (138)
.+.+.+..++.....+.++.| ++||++.|+.++...+|.++
T Consensus 130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHH
Confidence 788888888888888888886 78999999999999999975
No 98
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.90 E-value=3.6e-08 Score=76.53 Aligned_cols=117 Identities=6% Similarity=-0.017 Sum_probs=89.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
+.|+++.++|..++...+...+. .++.+++.||+++++....+.....+.+.++++.++ .|. +.....+.+++
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~-~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~g~~ 306 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLI-FAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA-----LPW-LIVIQILHCGT 306 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh-----HHH-HHHHHHHHHHH
Confidence 36889999999999887766666 458899999999999999998888887776665432 132 22345566777
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHH-HHHHHHhhHccCCcCC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVM-TVVSLTKTAGPAVRGA 138 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~-s~~sl~r~igP~i~G~ 138 (138)
.+...|.....+.+. +++++|+.+|+.+ .....+..+||.++|.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888886 6677899999886 4456777899988773
No 99
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.87 E-value=3.8e-08 Score=76.71 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=80.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
+.+|+++.+.|++.+......++. .++.+++.||+|+|+....+.......+..+....+ .+.. ...+.+..+
T Consensus 245 ~~~~~~~~~~g~~~~~~~~~~i~~-~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-l~~~~l~~~ 317 (393)
T PRK15011 245 NELHLPEKLAGVMMGTAAGLEIPT-MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS-----PAIL-LGLQLLNAI 317 (393)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh-----HHHH-HHHHHHHHH
Confidence 458999999999888777666555 558899999999999888766555444333322211 1211 122333333
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+...+......++..| ++||+++|+.+....++..+||.++|
T Consensus 318 ~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G 361 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAG 361 (393)
T ss_pred HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666777776 56999999999999999999998876
No 100
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.87 E-value=1.7e-08 Score=76.71 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=79.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH--HHHHHHH--HHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII--ITRIAGV--LSITLLTSYTYIAMLSGFSLALFINCASV 88 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~--~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 88 (138)
..+|+|+.+.++..+..++...+.+ .+.+++.||+++|+ ....... ..........+....... .+..+ ....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~ 320 (399)
T TIGR00893 244 QERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNI-PYAAL-ALVA 320 (399)
T ss_pred HHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchh-HHHHH-HHHH
Confidence 3478999999999999999998885 47799999999986 1111111 010111111111110111 12111 1222
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+...+.+ ..|...+++++..|+|+||+++|+.+....++..++|.+.|+
T Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~ 369 (399)
T TIGR00893 321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA 369 (399)
T ss_pred HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhh
Confidence 2222333 678899999999999999999999999999999999998763
No 101
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.86 E-value=4.6e-08 Score=75.82 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=88.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
.|.++.++|+..+..++..++.|. ..+++.||+++++++..+.....+...... .. . + . ...+.+...+.
T Consensus 230 ~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~----~-~-~~~~~l~g~~~ 299 (381)
T PRK03633 230 QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-A----A-M-APALFILGAAG 299 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-H----H-H-HHHHHHHHHHH
Confidence 588999999999999999999976 569999999999999888777666554332 11 0 0 0 11223334555
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
....|..++.+.+..|+|+++..++..+...++|..+||.++|+
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~ 343 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAM 343 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999888999999999998763
No 102
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.86 E-value=3e-10 Score=94.13 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=108.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh--------------
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG-------------- 76 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~-------------- 76 (138)
....|++++.|.|++.+.+-+..++.++ +..++.||++++|.+.++.+++.++.+++.+.+++.+
T Consensus 59 iek~F~lss~~~G~i~s~~~i~~~~~~i-~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~ 137 (633)
T TIGR00805 59 IERRFKLSTSSSGLINGSYEIGNLLLII-FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL 137 (633)
T ss_pred hhhhhCCCCCcceeeeehhhHHHHHHHH-HHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence 3457999999999999999999999966 6789999999999999999999999988876642210
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHH
Q 043916 77 -------------------------------FSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVV 125 (138)
Q Consensus 77 -------------------------------~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~ 125 (138)
...+..+++.+++++++.+..+|...+++.+.+|+++|++..|+.++..
T Consensus 138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA 217 (633)
T ss_pred cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence 0023455678899999999999999999999999999999999999999
Q ss_pred HHHhhHccCCcC
Q 043916 126 SLTKTAGPAVRG 137 (138)
Q Consensus 126 sl~r~igP~i~G 137 (138)
.+|.++||+++|
T Consensus 218 ~iG~~lG~llgg 229 (633)
T TIGR00805 218 VFGPAFGYLLGS 229 (633)
T ss_pred HhhhHHHHHHHH
Confidence 999999998876
No 103
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.85 E-value=2.8e-08 Score=77.68 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=82.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
+.|+++.+.+...+..++...+.+. +.+++.||+++|+.+..+..+..+.......... ....+.. .........
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~ 334 (426)
T PRK12307 260 GEGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ--DNYLLLG--ACLFGLMAT 334 (426)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc--ccHHHHH--HHHHHHHHh
Confidence 3588999999999999999888854 7799999999999998888766555443332211 1111111 111111111
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.....+.....+.+.+|+++||+++|+.++...++..+||.+.|
T Consensus 335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g 378 (426)
T PRK12307 335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT 378 (426)
T ss_pred cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence 11123445677889999999999999999999999999998876
No 104
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.85 E-value=2.6e-08 Score=76.06 Aligned_cols=121 Identities=14% Similarity=0.021 Sum_probs=84.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..+|+++.+.+......++...+.+. +.+++.||+|+|+.+..+..+..... .......... ..+. ......+..
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g 323 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIP-LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG--SFTL-FFFLVLGLA 323 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCC--chHH-HHHHHHHHH
Confidence 34789999999999999999988854 77999999999998775544333222 1111111001 1122 223334556
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHH-HHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLV-MTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~-~s~~sl~r~igP~i~G 137 (138)
.+.+...+...+++.+..|+|+||+.+|+. +....++..++|.++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g 370 (394)
T TIGR00883 324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA 370 (394)
T ss_pred HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence 666677788999999999999999999985 4445678889998776
No 105
>PRK09952 shikimate transporter; Provisional
Probab=98.85 E-value=4.6e-08 Score=77.50 Aligned_cols=96 Identities=5% Similarity=-0.042 Sum_probs=79.8
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 043916 39 TLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLA--LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGA 116 (138)
Q Consensus 39 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~ 116 (138)
.+++++.||+|+|+.+..+..++.+..+++.+.++......| ..+...+.+++++.+..+|....++++..|+++||+
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 467999999999999999999999999888887664321111 235567889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhHccC
Q 043916 117 ANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 117 ~~G~~~s~~sl~r~igP~ 134 (138)
..+..+....+|..+++.
T Consensus 162 ~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888887753
No 106
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.85 E-value=4.6e-08 Score=78.54 Aligned_cols=121 Identities=16% Similarity=0.264 Sum_probs=103.2
Q ss_pred EeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 043916 3 SLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALF 82 (138)
Q Consensus 3 pl~~~~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 82 (138)
+++...+ ++|+.++.+...+..+....+.|.+..|.+.+.+|++++...|+.........+.+.+.. |..
T Consensus 265 ~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-----w~~ 334 (463)
T KOG2816|consen 265 LLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-----WMM 334 (463)
T ss_pred EEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-----hhh
Confidence 4556666 999999999999999999999999999999999999999999999998888888776652 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 83 INCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 83 l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
....+.........|+..+.+++.+++||||+++++.+-+.++...++|.+
T Consensus 335 --~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~ 385 (463)
T KOG2816|consen 335 --FAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL 385 (463)
T ss_pred --hHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence 222344567778889999999999999999999999999999998888864
No 107
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.84 E-value=4e-09 Score=83.77 Aligned_cols=120 Identities=8% Similarity=0.038 Sum_probs=105.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.++-+|.+.++.|++.+..-+...+. .++++.+.||+.+++++..|..+|..+.++..+... .|. +.+.+.+.
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~-sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~-----Fwq-~~l~R~~v 131 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIA-SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH-----FWQ-VLLCRGFV 131 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHH-HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHh
Confidence 34578999999999999999999998 889999999999999999999999999988877633 243 55788888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++|++...|..++++++..|+++|+++.|+.+-....|-.+|=+.++
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 99999999999999999999999999999999998888887766554
No 108
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.83 E-value=5.7e-08 Score=75.43 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT 99 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 99 (138)
++.++..+..++...+.+. +.+++.||++++|....+.....+.+..+...++ .+. +.....+.+++.+..+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~G~~~~~~~~ 321 (399)
T PRK05122 249 DGAALALTLFGVAFVGARL-LFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS-----PWM-ALIGAALTGFGFSLVFP 321 (399)
T ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHHhHHHHHH
Confidence 3456667778888777754 6799999999999998888877777666554332 122 22344566777777888
Q ss_pred HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.....+.+..|+|+||++.|+.++...++..++|.+.|
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 359 (399)
T PRK05122 322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG 359 (399)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999887765
No 109
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.81 E-value=1.4e-07 Score=75.26 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=85.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh--hhhHHHHHHH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI--IGPIIITRIA--GVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~--~g~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
.+|++..+.|++++..++..++.+. +.+++.|| +++++..... .....+.+++++..++ .|. +.....+
T Consensus 270 ~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-----~~~-~~i~~~~ 342 (455)
T TIGR00892 270 DKGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD-----YTG-LVIYCIF 342 (455)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch-----HHH-HHHHHHH
Confidence 4689999999999999999998865 66778776 4444444333 3333333334433322 122 2334556
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
..++.+...+...+++.+.+|++++|+.+|+.++..+++..+||.++|+
T Consensus 343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~ 391 (455)
T TIGR00892 343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR 391 (455)
T ss_pred HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence 6677777788889999999999999999999999999999999999874
No 110
>PRK03545 putative arabinose transporter; Provisional
Probab=98.81 E-value=6.1e-08 Score=75.28 Aligned_cols=117 Identities=9% Similarity=0.009 Sum_probs=81.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
...|+|+.+.|+..+..++...+.+. +.+++.||+++++....... ..... .+.+..++ .+. +.....+..
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~-~~~~~~l~g 305 (390)
T PRK03545 234 QVAGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLLIAIAL-LLVCLLLLLPAANS-----EWH-LSVLSIFWG 305 (390)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHHHHHHH-HHHHHHHHHHHhch-----HHH-HHHHHHHHH
Confidence 44789999999999999999998855 67999999998765443333 33332 22232221 121 222333445
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
++.....+.....+.+..| |+||+++|+.++...++..+||.++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~ 351 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQ 351 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555667777777766 689999999999999999999998763
No 111
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.80 E-value=5e-08 Score=75.61 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITR 100 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 100 (138)
..|.+.+..++...+. ....+++.||+++++.+..+.....+..+...+... .|. +.....+..++.+...|.
T Consensus 259 ~~g~~~~~~~l~~~~~-~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~ 331 (408)
T PRK09874 259 ISGMIASVPGVAALLS-APRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT-----PLQ-LGILRFLLGAADGALLPA 331 (408)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHhhhHhhHHH
Confidence 3566666777777766 446789999999999999888877666554443322 122 223445667778888899
Q ss_pred HHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 101 LFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 101 ~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+.+.+..|++++|+..|+.++...++..+||.++|
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G 368 (408)
T PRK09874 332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGA 368 (408)
T ss_pred HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999876
No 112
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.80 E-value=3.7e-08 Score=79.58 Aligned_cols=120 Identities=7% Similarity=-0.062 Sum_probs=92.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..+|+|..+.+++.+.+....... ..+.+++.|| +|+|+.+..+..+..+++.++.+.... +..+...+.+..
T Consensus 50 ~~lg~s~~~a~~~~~~~~~~~~~~-~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~-----~~~l~~~~~l~g 123 (500)
T PRK09584 50 KQLGMSEADSITLFSSFSALVYGL-VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHD-----AGIVYMGMATIA 123 (500)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHH
Confidence 458999999998888776555554 3478999999 599999999999999888777654221 122334556677
Q ss_pred HHHHHHHHHHHHHHhhcccch--hhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 92 VLSVSIITRLFLLQNRAVEQH--QRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~--~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
++.+...|...+++++..|++ +|+++.++......+|..+||.++|+
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 888888888899999999864 35568888899999999999988763
No 113
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.79 E-value=3.1e-08 Score=77.06 Aligned_cols=122 Identities=7% Similarity=-0.019 Sum_probs=82.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK 90 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~ 90 (138)
+.+|+|+.|+|++.+...+...+.|. +.+++.||+|+||.+..+.....+............ ....+........+.
T Consensus 31 ~~~g~s~~~~g~~~~~~~l~~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (396)
T TIGR00882 31 DVNGLSKTDTGIVFSCISLFSILFQP-LFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL 109 (396)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999987 889999999999999887766554332211110000 000111122233444
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+...|....+..+.. +++++..|...+..++|.++||.++|
T Consensus 110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g 154 (396)
T TIGR00882 110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG 154 (396)
T ss_pred HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence 5555556666666655543 34466778888889999999998876
No 114
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.79 E-value=4.9e-08 Score=76.56 Aligned_cols=117 Identities=9% Similarity=0.068 Sum_probs=91.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
.+.+.+++|++.+..++...+.+. +.+++.||+|+|+....+..+..+.+.++++..+. |. +.....+...+.
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~-----~~-~~~~~~l~g~~~ 329 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGP-----LE-VSILKLLHAFEV 329 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccH-----HH-HHHHHHHHHHHH
Confidence 467788999999999999988855 78999999999999999888888877777665432 32 223445556666
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhH-HHHHHHHHhhHccCCcCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGL-VMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~-~~s~~sl~r~igP~i~G~ 138 (138)
....+.....+++..|++.+++..+. .+....++.++||.+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~ 374 (420)
T PRK09528 330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN 374 (420)
T ss_pred HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence 66667777888999999999998776 567788999999988763
No 115
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.77 E-value=2.1e-08 Score=78.31 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=90.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS 96 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (138)
.+..--|.+-+.+++...+. ....+.+.||+|+|-++.+|....++.+.+.....++ ..++..+++.++..+-
T Consensus 65 ~~~~yaGflGSsF~ilQ~~s-S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F------~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFIS-SPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF------AAFVLARFLGGIFKGN 137 (451)
T ss_pred ccchhhhhHhhHHHHHHHHh-hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCc
Confidence 45555677777888888777 6678999999999999999999988888777665543 1233345555555443
Q ss_pred HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 97 IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 97 ~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
. ..+.+++++.+++|+|+..++...+.-++|-.+||.+||+
T Consensus 138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy 178 (451)
T KOG2615|consen 138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY 178 (451)
T ss_pred h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence 3 4589999999999999999999999999999999999985
No 116
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.77 E-value=2.4e-08 Score=80.70 Aligned_cols=118 Identities=9% Similarity=0.062 Sum_probs=91.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-GPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
++|++..+.+.+.+.+.....+. ..+.+++.||+ |+||.+.++..+..++..++....... +. +.....+..+
T Consensus 39 ~lgls~~~a~~i~~~~~~~~~l~-~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~----~~-~~l~l~li~i 112 (493)
T PRK15462 39 QLKYDDNHAYELFSAYCSLVYVT-PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP----SF-LYLSLAIIVC 112 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcch----hH-HHHHHHHHHH
Confidence 48999999999999999888888 44889999999 999999999998888776554321100 11 1122223345
Q ss_pred HHHHHHHHHHHHHhhcccch--hhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQH--QRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~--~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...|...+++++..|++ +|.+..++......++..++|.+.|
T Consensus 113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g 159 (493)
T PRK15462 113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG 159 (493)
T ss_pred hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence 66666687889999999875 7999999999999999999998865
No 117
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.77 E-value=4.8e-08 Score=76.20 Aligned_cols=124 Identities=10% Similarity=-0.068 Sum_probs=86.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF-----SLALFINCAS 87 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~l~~~~ 87 (138)
..+|++..+.++.....++...+.+. +.+++.||+++|+....++.+..+.+..+.+....... ..+..+....
T Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (481)
T TIGR00879 312 ENAGVSTDHAFLVSIIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFIL 390 (481)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHH
Confidence 45788888899999999988888854 67999999999999998888777776665532111000 0111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
......+....|....++++..|+++||+.+|+.+....++..++|.+.|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~ 440 (481)
T TIGR00879 391 LFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP 440 (481)
T ss_pred HHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12122222233566777799999999999999999999999999998754
No 118
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.74 E-value=2.5e-07 Score=74.60 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=85.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+|++++|+.....+....+...++.+++.||+|++|....+.....+..+.+......... .+. +.....+..+
T Consensus 251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~-~~~-l~~~~~l~~~ 328 (491)
T PRK11010 251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKN-LYS-MGAAVFFENL 328 (491)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH-HHHHHHHHHH
Confidence 35899999999998767654454557789999999999987776555444332222111111111 122 2233445555
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..++..+...++.++.+|++.+|+..|+.++...+++.++|.++|
T Consensus 329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G 373 (491)
T PRK11010 329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAG 373 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888899999999999999999999999999998877665
No 119
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.73 E-value=3.1e-08 Score=77.73 Aligned_cols=121 Identities=12% Similarity=0.008 Sum_probs=75.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|+|+.|+|++.+...+...+.|. +.+++.||+|+||....+..........+..... ........+ ....+..+.
T Consensus 40 ~~g~s~~~~g~~~s~~~l~~~i~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 116 (420)
T PRK09528 40 INGLSGTDTGIIFSANSLFALLFQP-LYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF-APLLQYNIL-LGAIVGGIY 116 (420)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHH
Confidence 4899999999999999999999987 8899999999999988766655544322111100 000000000 111111122
Q ss_pred HHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..++.....+++..+ ++++|...|..+...+++.++||.++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 162 (420)
T PRK09528 117 LGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAG 162 (420)
T ss_pred hhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHH
Confidence 22222222222333333 356788999999999999999998876
No 120
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.73 E-value=2e-07 Score=71.42 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=85.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-PIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
+.|+|+++.|...+..++..++.+. +.+++.||++ +|+....+..+..+....+.+.... +..+ ...+.++
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~l~g~ 297 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-----GLWA--WALVLGL 297 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-----HHHH--HHHHHHH
Confidence 3688999999999999999999855 7789999995 5556667666666665544433221 1111 2345577
Q ss_pred HHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+..+|...+.+.+..+ +|++|+..|+.++...++..+||.+.|
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G 343 (355)
T TIGR00896 298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG 343 (355)
T ss_pred hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888877777665554 578899999999999999999998776
No 121
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.73 E-value=1.8e-07 Score=75.37 Aligned_cols=124 Identities=12% Similarity=0.018 Sum_probs=93.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHHHH-HHHHHHHHHHHhhhhhhhh---------HH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITRIA-GVLSITLLTSYTYIAMLSG---------FS 78 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~~~-~~~~~~~~~~~p~~~~~~~---------~~ 78 (138)
..+|.++.+.++++....+...+.|. +.+++.| |+|+||.+..+ .....+.+.++++...... ..
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~P-i~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~ 110 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQP-LVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK 110 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHh-HeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence 45889999999999999999999976 7799999 59999998874 5666667777776544210 00
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh--hhhhhHHHHHHHHHhhHccCCcC
Q 043916 79 LA--LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQR--GAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 79 ~~--~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~--G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+ ........+..+..+...+...+++.+.+|+++| +.++++.+....+|..+|+.++|
T Consensus 111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122233344556676777789999999998754 78999999999999999998875
No 122
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.71 E-value=2.3e-08 Score=80.19 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=97.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hh---h-HHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM-LS---G-FSLALFINCAS 87 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~---~-~~~~~~l~~~~ 87 (138)
+.+|++++++|......++..++.+. ..+++.+|++.|+++.++..+........+.... .. + ...| .+....
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-~~~~~~ 358 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVG-GYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-FVLGDS 358 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHH-HHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee-eeeehh
Confidence 57999999999999999999999955 6778889999999999999988887755442211 00 0 0011 122344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..++.++.+.....++++.+|++++|+..++.++..++++.+|+.++|
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg 408 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV 408 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888999999999999999999999999999999998765
No 123
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.70 E-value=1.7e-07 Score=73.13 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=86.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
+|+++.+.|...+..++..++.+. +.+++.||+++++....+..+...+...+...... . .... ..+..++.
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~--~--~~~~---~~l~g~g~ 306 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ--L--PVLW---AMVCGLGL 306 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch--H--HHHH---HHHHHHhc
Confidence 689999999999999999999855 77999999999999998887777766554432210 0 1111 12234555
Q ss_pred HHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 95 VSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+..+|.......+..+ +|++|+..|+.++...++..+||.+.|+
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~ 351 (393)
T PRK09705 307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGV 351 (393)
T ss_pred cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666766666666664 6899999999999999999999988763
No 124
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.68 E-value=4.5e-07 Score=71.07 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916 18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI 97 (138)
Q Consensus 18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 97 (138)
++.+.++......+..++. .++.+++.||+|+|+.+..+..+..+.+..+.+.. +. .+. +.....+..++.+..
T Consensus 255 ~~~~~~~~~~~~~i~~ii~-~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~g~~~~~~ 328 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIG-VLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG---SN-LPL-ILVLIILAGFGQNFV 328 (437)
T ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc---hh-HHH-HHHHHHHHHHHHHHH
Confidence 5677888888887777777 56789999999999999999888777766554432 11 122 223344556777777
Q ss_pred HHHHHHHHhhccc-------chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 98 ITRLFLLQNRAVE-------QHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 98 ~p~~~~li~~~~p-------~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...+++.+.++ ++++|+..|+.+....++.++||.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899888876 456899999999999999999998765
No 125
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.67 E-value=4.8e-07 Score=70.55 Aligned_cols=121 Identities=12% Similarity=-0.038 Sum_probs=87.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-GFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~ 91 (138)
..+|+++.+.|+..........+. ..+.+++.||+++++....+.....++..++....... ....| +.....+..
T Consensus 244 ~~~g~~~~~~g~~~~~~~~~~~~g-~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g 320 (406)
T PRK15402 244 SGEQLSSYEYGLLQVPVFGALIAG-NLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLW--LTAGLSLYA 320 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH--HHHHHHHHH
Confidence 347899999999888777766666 55789999999999999988877766665554432111 11112 234445566
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+.+...|........ .++++||+++++.+....++..+||.++|
T Consensus 321 ~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~ 365 (406)
T PRK15402 321 FGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSK 365 (406)
T ss_pred HHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766665543 45699999999999999999999988765
No 126
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.67 E-value=2.4e-07 Score=73.89 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+|+.+.++......+...+. ..+.+++.||+++|+.................+... .. .+. +.....+.+.
T Consensus 287 ~~~g~s~~~a~~~~~~~~~~~~ig-~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~G~ 361 (467)
T PRK09556 287 QELGFSKEDAINTFTLFEIGALVG-SLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-TS--EYM-YLASLFALGF 361 (467)
T ss_pred HccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-Cc--HHH-HHHHHHHHHH
Confidence 458999999999999888888888 558899999999998766554433332222111110 01 111 1111122121
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G 137 (138)
..............+..|+|++|+++|+.++...+ +-+++|.+.|
T Consensus 362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G 407 (467)
T PRK09556 362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG 407 (467)
T ss_pred HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence 11111112235667999999999999999999996 7688888765
No 127
>PRK09848 glucuronide transporter; Provisional
Probab=98.64 E-value=8.8e-07 Score=70.18 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|.++.+.++......+...+. .++.+++.||+|+++.+..+..+..++++.+.+... ...|. +.....+.+++
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~---~~~~~-~~~~~~l~g~G 332 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVAS-APLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV---WSLPV-ALVALAIASIG 332 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc---hhHHH-HHHHHHHHHHH
Confidence 36766554444333333444444 668899999999999999999888777766654321 11232 23345567888
Q ss_pred HHHHHHHHHHHHhhcccchh-------hhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQ-------RGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~-------~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...+...++..+.+|++| +|..+|+.+....++.++|+.+.|
T Consensus 333 ~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 333 QGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998654 588899988888889888887654
No 128
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.63 E-value=4.5e-07 Score=68.83 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=74.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++.+.++..+..++...+.+. +.+++.||...++...........................+.. .........
T Consensus 245 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 322 (379)
T TIGR00881 245 QEKGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMD-LICLFALGF 322 (379)
T ss_pred HHhCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHH-HHHHHHHHH
Confidence 34789999999999999999888854 7789999864333222222111111111111100000001111 112222222
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
......+....+.++.+|+|+||+++|+.++...++..++|.+.|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 367 (379)
T TIGR00881 323 LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG 367 (379)
T ss_pred HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence 233334455678899999999999999999999999999998876
No 129
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.61 E-value=8.9e-07 Score=69.96 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=94.8
Q ss_pred CC-CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 15 LS-YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 15 lg-~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
+| .+.+.+|.+++..-+.-+.+ .+..+++.+|+|.++++.++...+.+=+.++.+.+. +....+....+...++++.
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~-f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~q~lhG~t 314 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPF-FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLGQLLHGLT 314 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhHH
Confidence 44 67778888888877777777 778899999999999999999998887777766522 1001122222334567777
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHH-HHHHhhHccCCcCC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTV-VSLTKTAGPAVRGA 138 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~-~sl~r~igP~i~G~ 138 (138)
-+..+.+....+++.+|+|.|++++|+.+.. ..+|..+|..++|+
T Consensus 315 f~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 315 FGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW 360 (400)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7888899999999999999999999998775 57899999888874
No 130
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.61 E-value=1.4e-07 Score=82.15 Aligned_cols=117 Identities=12% Similarity=-0.047 Sum_probs=91.7
Q ss_pred CCCCChh-HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTK-NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~-~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.+|++.. +.|++++..++..++.+ ++.+++.||+++++.+.++.....+..+++.+... .+. +.+..++.++
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~ 334 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS-----LAS-VLVLFFLFGF 334 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh-----HHH-HHHHHHHHHH
Confidence 4788988 99999999999988884 57899999999999888887777766665554432 122 2234455566
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...+...+++.+.+|+++||+++|+.+....++..+++.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999887776543
No 131
>PRK03699 putative transporter; Provisional
Probab=98.61 E-value=2.5e-07 Score=72.03 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=84.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+|+.+.|.+.+...+...+.. .+.+++.||+++|+..........+...++....+. .+. .....+...
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~G~ 306 (394)
T PRK03699 234 KKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP----SHL--LYAILGLGF 306 (394)
T ss_pred HHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc----hHH--HHHHHHHHH
Confidence 3479999999999999998888884 478999999999999887776665554444333221 111 122334455
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+..+|...+...+..| +++++..|.......++..++|.+.|
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G 350 (394)
T PRK03699 307 FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTS 350 (394)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555666776777777665 45678889999999999999998876
No 132
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.60 E-value=8.4e-07 Score=69.41 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++++.|..+...++...+.. .+.+++.||.+++..............++....+. .|.. .....+.++
T Consensus 245 ~~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~l~G~ 317 (394)
T PRK10213 245 NLAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSD-----KIVA-TGVAIIWGL 317 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh-----HHHH-HHHHHHHHH
Confidence 4578999999999999999999885 57789999964443333333323332333322211 2322 234455677
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+.+...+...+++.+..| |++++..++.++..+++..+||.++|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~ 362 (394)
T PRK10213 318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGY 362 (394)
T ss_pred HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888889998887 678899999999999999999998873
No 133
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.60 E-value=8.4e-07 Score=68.86 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=78.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+|+++.++..+..++...+.+. +.+++.||+|+++....+..+..+.+.++...... . +..+ ....+...
T Consensus 228 ~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~--~--~~~~-~~~~~~~~ 301 (382)
T PRK10091 228 FISGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM--K--TASL-IFAFICCA 301 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh--H--HHHH-HHHHHHHH
Confidence 44799999999999999999999855 88999999999999998887777766555432221 1 1111 11122223
Q ss_pred HHHHHHH-HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 93 LSVSIIT-RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 93 ~~~~~~p-~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
+.....+ ......++..|+|++|..+ .++...++.++||.++|+
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~ 346 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGM 346 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHH
Confidence 3222223 3334555555667777664 467789999999998873
No 134
>PRK09952 shikimate transporter; Provisional
Probab=98.59 E-value=1.2e-06 Score=69.47 Aligned_cols=122 Identities=7% Similarity=0.044 Sum_probs=80.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|++.++........+....+. ..+.+++.||+|+||.+..+..........+-.... .....+. +.....+...
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~-~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~ 355 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLT-IPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-AQSIFWI-VFFSIMLANI 355 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-cCChHHH-HHHHHHHHHH
Confidence 457888887666666666666666 457899999999999988776654433221111100 0111122 1223334455
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH-HHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS-LTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s-l~r~igP~i~G 137 (138)
+.+...+...+++.+..|.+.|++.+|+...... ++..++|.+.|
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g 401 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAA 401 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6666677788999999999999999999776654 78888887654
No 135
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.59 E-value=7e-07 Score=72.00 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=83.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-----hhHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-----GPIII-TRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS 87 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-----g~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 87 (138)
..|.|.+++|.. +..+... +.+ ++..++.||+ |+||. +..+..........+.+.....+ .|. +....
T Consensus 41 ~~g~~~~~ig~~-~~~~~~~-~~~-~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~--l~~-l~~~~ 114 (491)
T PRK11010 41 VENIDLKTIGFF-SLVGQAY-VFK-FLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQ--LRW-LAALA 114 (491)
T ss_pred hCCCCHHHHHHH-HHHHHHH-HHH-HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcch--HHH-HHHHH
Confidence 348999999996 5555554 354 4778899999 98885 44666666566555544321111 122 22344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.+...+.+...+...+++.+..|+||||+.+|+.+....+|..++|.++
T Consensus 115 ~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~ 163 (491)
T PRK11010 115 VVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA 163 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888999999999999999999999999999999988654
No 136
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.58 E-value=4.9e-07 Score=73.22 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=99.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++++...|.|.+-+.+-+.++++|. +...+.||++..+......+.|.+...+.-..++. + .+...+++.++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~-p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~-----~-~~ialr~llGl 146 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQF-PSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSF-----P-GLIALRFLLGL 146 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHh-hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhh-----H-HHHHHHHHHHH
Confidence 46788999999999999999999988 88999999998888887777777766555444332 2 34567888899
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.++..+|....++.++..++|||+.+|++.+.+++|.++|.+++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA 190 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIA 190 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999988765
No 137
>PRK10054 putative transporter; Provisional
Probab=98.58 E-value=2.6e-07 Score=72.35 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=90.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
+.+.+...+|..+..++......|. ..+++.||.++|+....+..+..+.+..+.+... + .|. +.....+..++
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~~~g 311 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQY-SVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN--S--LLL-WGMSAAVFTVG 311 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehh-HHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch--H--HHH-HHHHHHHHHHH
Confidence 4677888899999999988888864 5678889999999998888777777665544211 1 122 22345566778
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
.....|.....+.+.+|++.||+..|.. +...+|.++||.++|+
T Consensus 312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~ 355 (395)
T PRK10054 312 EIIYAPGEYMLIDHIAPPGMKASYFSAQ-SLGWLGAAINPLVSGV 355 (395)
T ss_pred HHHHHhhHHHHHHHhCCcccceehHhHH-HHHHHHHHHHHHHHHH
Confidence 8888898999999999999999999864 4677899999998763
No 138
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.55 E-value=9.2e-07 Score=68.81 Aligned_cols=117 Identities=10% Similarity=0.050 Sum_probs=82.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
.+.+.+++|...+...+...+.+. ..+++.||+|+|+...++..+..+.+.+.+...+. |.. .....+.+++.
T Consensus 249 ~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~-----~~~-~~~~~l~g~~~ 321 (396)
T TIGR00882 249 PQQGTRVFGYVTTMGELLNALIMF-CAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTA-----LEV-VILKMLHAFEV 321 (396)
T ss_pred cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCCh-----HHH-HHHHHHHHHHH
Confidence 356778899999999888888854 77999999999999999888888877665543321 222 22333444443
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhH-HHHHHHHHhhHccCCcCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGL-VMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~-~~s~~sl~r~igP~i~G~ 138 (138)
...........++..|++.+++.++. .+....++..++|.++|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~ 366 (396)
T TIGR00882 322 PFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN 366 (396)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence 33333344455566677777887776 678899999999998874
No 139
>PRK15075 citrate-proton symporter; Provisional
Probab=98.55 E-value=4.3e-07 Score=71.70 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=77.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLT-SYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
+.+|++..+.++.....++...+. ..+.+++.||+|+|+.+..+......... ....... ....+. +.....+..
T Consensus 267 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ 342 (434)
T PRK15075 267 TVLHLSAADSLLVTLCVGVSNFIW-LPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--APSFAR-MLAVELWLS 342 (434)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchHH-HHHHHHHHH
Confidence 347899999999988888888877 45789999999999988776544322111 1101101 010111 111122223
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G 137 (138)
++.+...+.....+.+..|+|+||+.+|+.++.... +..++|.+.|
T Consensus 343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 444555566678889999999999999997765554 4667887654
No 140
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.55 E-value=1.3e-06 Score=69.24 Aligned_cols=119 Identities=12% Similarity=-0.064 Sum_probs=83.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|++..+.++.....++...+. ..+.+++.||+|+|+++..+..+..+.+..+...........+.. ..+.+...
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~--~~~~~~~~ 375 (479)
T PRK10077 299 KTLGASTDIALLQTIIVGVINLTF-TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL--LSMLFYVA 375 (479)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH--HHHHHHHH
Confidence 456777777777777888888887 457889999999999999999888887766653321110011111 12222222
Q ss_pred HHHH-HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 93 LSVS-IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 93 ~~~~-~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
+... ..|....++++..|+++||+++|+.+....++..++|.
T Consensus 376 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 418 (479)
T PRK10077 376 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSW 418 (479)
T ss_pred HHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 23677899999999999999999999999999988743
No 141
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.54 E-value=7.9e-07 Score=69.05 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=79.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHH-HHHHHHh-hhhhhhhHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSI-TLLTSYT-YIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~-~~~~~~p-~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.++|+|..|+|++.+.+.+...+.|. +..++.||+|++...+....... +..+.+. ..++ .|. +...+.+.
T Consensus 32 ~~~g~s~~~ig~~~s~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~-l~~~~~l~ 104 (382)
T TIGR00902 32 KGIGLGEEMIGLLIGAALIARFAGGL-FFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHN-----AWL-LFIAIGLF 104 (382)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhh-----HHH-HHHHHHHH
Confidence 35899999999999999999999976 66788899986443322221111 1111111 1111 233 22345556
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+.+...|...++..+. +++||+..|......++|-++||.++|
T Consensus 105 ~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g 149 (382)
T TIGR00902 105 ALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG 149 (382)
T ss_pred HHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH
Confidence 666666778888887653 578999999999999999999998765
No 142
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.54 E-value=2.5e-06 Score=66.64 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH--
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM-- 89 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~-- 89 (138)
...+|++++++|+++...+....+....+.+++.||+|++|....+.....+..+.+.......+. .|. +.....+
T Consensus 237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~-~~~-~~~~~~~~~ 314 (402)
T PRK11902 237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKH-LWT-MALAIGIEN 314 (402)
T ss_pred HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-HHH-HHHHHHHHH
Confidence 345799999999999887776444446788999999999998877666555443322211111111 122 1122222
Q ss_pred --HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 90 --KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 90 --~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.....+...+..+.++++..|.+++ ++.++..++++.+++.++|
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G 360 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSG 360 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 2333444455566666666665554 5555566777765555554
No 143
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.53 E-value=4.6e-07 Score=70.32 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPI----IITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASV 88 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 88 (138)
.++|+|..++|+..+.+.+...+.|. +.+++.||+|++ +....+..... ..+.... ...|.. ...+.
T Consensus 32 ~~~g~s~~~iG~~~~~~~l~~~l~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~l-~i~~~ 102 (382)
T PRK11128 32 KGQGYTPETIGLLLGAGLVARFLGSL-LIAPRVKDPSQLIPALRLLALLTLLFA---VAFWFGA----HSFWLL-FVAIG 102 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhH-HHHHHHhhhcchHHHHHHHHHHHHHHH---HHHHHhc----ccHHHH-HHHHH
Confidence 34799999999999999999999966 667889999984 33322222111 1111111 112433 23455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+...+.+...|...++..+. +++|++.+|..+...+++-++||.++|
T Consensus 103 l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg 149 (382)
T PRK11128 103 LFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTG 149 (382)
T ss_pred HHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHH
Confidence 56667777778777777765 467899999999999999999999886
No 144
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.53 E-value=1.6e-06 Score=70.22 Aligned_cols=107 Identities=14% Similarity=0.051 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT 99 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 99 (138)
++.+++.+...+...+.+. +.+++.|++|+|+.+.++...+.++.++..++.+ +..+...+++.+++.+...-
T Consensus 89 ~~~s~~~s~~~lga~~g~l-~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSL-LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------WYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhccchhhhhh
Confidence 5779999999999999955 7789999999999999999999999998887764 23566889999999999988
Q ss_pred HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916 100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP 133 (138)
Q Consensus 100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP 133 (138)
.....+++.+|++.||..+...|....+|-.+|-
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~ 195 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGY 195 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877763
No 145
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.52 E-value=2e-07 Score=81.51 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=89.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh---------------hhhH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM---------------LSGF 77 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~~ 77 (138)
..+|.++.+.|++++..++..++.+. +.+++.|+..+++....+..+..+..+.+++... ....
T Consensus 254 ~~~g~~~~~~g~~~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 254 ETLGGDENVATLFLAVFSVGVAVGSF-LASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 34899999999999999999999855 7788888877777666555555444443333200 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 78 SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..|.. .+..++.+++.+...+...+++.+.+|+++||+++|+.+...+++..+||.++|
T Consensus 333 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g 391 (1140)
T PRK06814 333 HGWRI-LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA 391 (1140)
T ss_pred ccHHH-HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence 11322 234445567788888889999999999999999999999999999999998754
No 146
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.51 E-value=4e-06 Score=64.24 Aligned_cols=119 Identities=15% Similarity=0.085 Sum_probs=83.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++++.|++....++...+.+. +.+++.||+++|+....+.........++......... .+..+.....+...
T Consensus 235 ~~~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 235 DIMGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG-SWAMIIGPMMFVGI 312 (385)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHH
Confidence 35789999999999999998888854 78999999999999988877777666555433211101 12222233445566
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPA 134 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~ 134 (138)
+.+...+.......+..| +++|+++++.++.... +-..+|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~ 354 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL 354 (385)
T ss_pred HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777765 6899999998887765 4444443
No 147
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.49 E-value=2.6e-06 Score=66.62 Aligned_cols=121 Identities=18% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITR-IAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.++|+|+.+.+...+..++...+. ....+++.||+++|+... .+.....+....+.+.........+... ....+..
T Consensus 250 ~~~g~s~~~~~~~~~~~~~~~~ig-~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~G 327 (402)
T TIGR00897 250 AELGFSTSEWLQIWGTFFFTNIVF-NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL-IIAIALG 327 (402)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH-HHHHHHH
Confidence 347899999999999999988888 457799999999888764 2222222222222211110000112211 1222223
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+.+...| ....+.+. +|++||++.|+.++...++..+||.++|
T Consensus 328 ~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g 371 (402)
T TIGR00897 328 IFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAV 371 (402)
T ss_pred HHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334 34455554 4568999999999999999999998775
No 148
>TIGR00898 2A0119 cation transport protein.
Probab=98.46 E-value=2.5e-06 Score=68.31 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043916 27 AISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQN 106 (138)
Q Consensus 27 ~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~ 106 (138)
...++..+.. .++..++.||+|+|+....+..+..+..+++.+..... .+.. .....+...+....++....+.+
T Consensus 362 ~~~~~~~i~~-~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
T TIGR00898 362 FISGLVELPA-KLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL---YFLR-TALAVLGKFGITSAFQMVYLYTA 436 (505)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc---hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555554 44668899999999999998888777766665543211 1111 12223334455667788889999
Q ss_pred hcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 107 RAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 107 ~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+..|++.|++++|+.++...++.+++|.+.+
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999998653
No 149
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.43 E-value=3.5e-06 Score=68.06 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=92.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhH--HHHHHHHHHHHHHHH--HHhhhhhhhhH-HHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPI--IITRIAGVLSITLLT--SYTYIAMLSGF-SLALFINCA 86 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~--~~p~~~~~~~~-~~~~~l~~~ 86 (138)
.+.+|+|..|+..+.-...+..++. .++++++.||+|.| +++..++..+.+..+ ++.+.....+. ..|.. ...
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~G-a~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f-~~~ 386 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIG-ALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF-WVL 386 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH-HHH
Confidence 3469999999999999988888888 77999999999999 888888877643322 22111111111 12322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.++..+...+...++.++..|+++.++..|+.....-.+-.+||++-|
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567778888999999999999999999999999999999999998754
No 150
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.41 E-value=3.4e-06 Score=65.95 Aligned_cols=115 Identities=6% Similarity=-0.077 Sum_probs=81.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|.|+.+.|++.+..++...+. ....+++.||.++++....+.. ......++++.+. .|. ......+.+++
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g-~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-----~~~-~~~~~~~~G~~ 306 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVG-AGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHS-----LLP-AYPLLILIGAL 306 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHH-HHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhH-----HHH-HHHHHHHHHHh
Confidence 47999999999999999988888 4467899999999888877754 3333333333221 122 22334455666
Q ss_pred HHHHHHHHHHHHhhcccchh-hhhhhhHHHHHHHHHhhHccCCc
Q 043916 94 SVSIITRLFLLQNRAVEQHQ-RGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~-~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.+...+..++.+.+..|+|. +|++.++.+....++..++..+.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~ 350 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLY 350 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence 66666777788877666554 79999999999999988887654
No 151
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.41 E-value=1.2e-05 Score=61.70 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=74.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|+++++.|+.....++...+.+. +.+++.||+|+|+.+..+........+..-..... +...|... ....+...+
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 300 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-DLGFWALV-VGVAAFVGC 300 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH-HHHHHHHHH
Confidence 4789999999999999999999854 77999999999999988876543322111111111 11112211 122222233
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHH-HHHHhhHccCCc
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTV-VSLTKTAGPAVR 136 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~-~sl~r~igP~i~ 136 (138)
.+...+.....+.+..| |++|+++++.++. .+++..+|+.++
T Consensus 301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666555 8999999998765 346666666554
No 152
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.40 E-value=4.3e-06 Score=65.80 Aligned_cols=121 Identities=8% Similarity=-0.150 Sum_probs=97.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.-++.+..|.+.+...+=..+.+. ....+++.||+|.|+-+..++.+++++..++-.+.... .|.......++...
T Consensus 41 ~~f~ls~~~a~liqfaff~gYf~~-~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~---~y~~FL~~lFila~ 116 (422)
T COG0738 41 EVFDLTYFEASLIQFAFFGGYFIM-SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK---SYGFFLVALFILAS 116 (422)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHH-hccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHHh
Confidence 458999999999999888888877 66889999999999999999999999876553232221 23333344556666
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
|-+..-.+...+++...|+|+-.+-+.+.|+.+++|.++||++++
T Consensus 117 Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 117 GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777788888999999988888999999999999999999875
No 153
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.39 E-value=5.4e-06 Score=65.25 Aligned_cols=117 Identities=11% Similarity=0.123 Sum_probs=73.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
+.|.++.+.+......++...+. ..+.+++.||+++|+.. ........+.+.+.... .+. ...+ ....+...
T Consensus 273 ~~~~s~~~~~~~~~~~~l~~~~g-~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~ 345 (412)
T TIGR02332 273 NQGSSNIMIGLLAAIPQFCTIFG-MIWWSRHSDRLKERKHHTALPYLFAAAGWLLASAT---DHN--LIQL-LGIIMASM 345 (412)
T ss_pred CCCCcHHHhHHHhhHHHHHHHHH-HHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhc---CCH--HHHH-HHHHHHHH
Confidence 35778899999999999998888 56889999999977743 33333333322211111 111 1111 11111122
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.....+.......+..|+|+||+++|+.+....++.+++|.+.|
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g 390 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG 390 (412)
T ss_pred HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 222222333344456788999999999999999999999998776
No 154
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.39 E-value=4.1e-06 Score=66.24 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=71.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh--hhHHHHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII--GPIIITR----IAGVLSITLLTSYTYIAMLSGFSLALFINCA 86 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~--g~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 86 (138)
..+|+|+.+.+...+..++...+. -++.+++.||+ ++|+... .+.....+.+...|..+ ..+.. ..
T Consensus 272 ~~~g~s~~~a~~~~~~~~~~~~~g-~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~ 343 (434)
T PRK11663 272 ETLGVDLVTANSAVSMFELGGFIG-ALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS-----YVMQA--AC 343 (434)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHH-HHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc-----HHHHH--HH
Confidence 447999999999999999999888 45789999998 3332221 12222222222223211 11111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
......+...........+.+..|+++||+++|+.++...++.+++|.+.|
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g 394 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA 394 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH
Confidence 111111111111123445678888999999999999999999999999876
No 155
>PRK11043 putative transporter; Provisional
Probab=98.39 E-value=8.9e-06 Score=63.24 Aligned_cols=121 Identities=14% Similarity=0.005 Sum_probs=79.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
..|+++.++|+.....++...+. ....+++.||+++++..+.......+....+-..........+. +.....+...+
T Consensus 232 ~~g~s~~~~g~~~~~~~~~~~~g-~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 309 (401)
T PRK11043 232 QMGYSPADIGLSYVPQTIAFLVG-GYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVP-LLIPFCVMAAA 309 (401)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHH
Confidence 47899999999888877777776 44678999999999987766555444433222111111111121 22233344566
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..+|.......+..| |++|+++|+.++....+-..+|.+.|
T Consensus 310 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 310 NGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777877777666665 68999999999988877777766544
No 156
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.38 E-value=2.7e-06 Score=67.22 Aligned_cols=112 Identities=12% Similarity=0.041 Sum_probs=76.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGP-IIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
+++|+|.+|+|++.+...+...+.|. +.+++.||+|+ |+++..+.....+.+.+.++.++. |. +...+.+..
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~-~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~ 103 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPI-LVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTP-----AG-MFPVLLANS 103 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCH-----HH-HHHHHHHHH
Confidence 45899999999999999999999987 77999999964 778888888887777776655432 11 122334445
Q ss_pred HHHHHHHHHHHHHHhh--------cccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNR--------AVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~--------~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|..+++... ...+..|.+..| ++|-++||.++|
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g 151 (418)
T TIGR00889 104 LAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS 151 (418)
T ss_pred HHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH
Confidence 5555556655555321 123345666665 366777776654
No 157
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.38 E-value=8e-06 Score=62.26 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=85.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|+++++.+...+.+-....+. -++.+++.||+|++|..+++..+..+..++....+. . +. . ....+...+
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iG-r~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~---~--~~-~-~~~~l~g~~ 243 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVG-RFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG---Y--VA-M-WFVLALGLF 243 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC---H--HH-H-HHHHHHHHH
Confidence 47899999999999999988887 668899999999999999888777766544443221 1 11 1 122355788
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..+|...++..+..|+ +.+++.++. ....+|.++.|.+-|
T Consensus 244 ~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G 285 (310)
T TIGR01272 244 NSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQG 285 (310)
T ss_pred HHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHH
Confidence 899999999999888875 355666774 677888999997654
No 158
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.37 E-value=8.8e-06 Score=65.40 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..+|++..+.++......+...+. ..+.+++.||+|+|+.+..+........ ..+..... +. ...+.....+..
T Consensus 279 ~~~g~s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~g 353 (490)
T PRK10642 279 HNLHYSEDHGVLIIIAIMIGMLFV-QPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS--NV--IGLIFAGLLMLA 353 (490)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC--CC--HHHHHHHHHHHH
Confidence 357888888887777776767766 4467999999999998887765433221 11111111 11 111222333333
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...+.....+.+..|++.||+..|........+..++|.+.|
T Consensus 354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g 399 (490)
T PRK10642 354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA 399 (490)
T ss_pred HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556677778899999999999866666666677776544
No 159
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.35 E-value=3.7e-06 Score=66.27 Aligned_cols=119 Identities=20% Similarity=0.132 Sum_probs=91.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916 9 LRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASV 88 (138)
Q Consensus 9 ~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 88 (138)
|+..+..|+|.+++++++..+|+...+.+ .+.+++.|| +.++.......+....++.+++.... .+..+ ....
T Consensus 236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~----~~~~~-~~~~ 308 (394)
T COG2814 236 PFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLLLALALLALTFTGAS----PALAL-ALLF 308 (394)
T ss_pred HHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcch----HHHHH-HHHH
Confidence 34456678999999999999999999995 488999999 99999999988888888877765442 13222 1222
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+ .+....|..+.+..+.++ ||+++.+.+++++...+|.++|-.+||
T Consensus 309 ~---wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG 356 (394)
T COG2814 309 L---WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGG 356 (394)
T ss_pred H---HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333444666666666666 699999999999999999999988876
No 160
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.35 E-value=4.5e-06 Score=67.15 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hhhHhh-hhhHHHH--HHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHH
Q 043916 22 VGQVLAISGFNLLFSQLTLY---PYVERI-IGPIIIT--RIAGVLSITLLTSYTYIAMLSG----FSLALFINCASVMKN 91 (138)
Q Consensus 22 ig~~~~~~g~~~~~~q~~~~---~~l~~~-~g~~~~~--~~~~~~~~~~~~~~p~~~~~~~----~~~~~~l~~~~~~~~ 91 (138)
.+++.+.+++..++.|..+. +++.|| .+++... .+|..+..+++..+.+.....+ ...|. ++...++.+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~-~i~~~~~~~ 392 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWF-MVLIYLFQT 392 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH-HHHHHHHHH
Confidence 78999999999999986543 355554 3333444 5677777777766554211110 11232 345667889
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
+++.+..|...+++++.+|++.||+.+|+++...++|+.+|+.+.
T Consensus 393 ~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~ 437 (475)
T TIGR00924 393 LGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLA 437 (475)
T ss_pred HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987654
No 161
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.35 E-value=4.6e-06 Score=66.27 Aligned_cols=119 Identities=11% Similarity=0.019 Sum_probs=69.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
..|++..+.++.....++...+. .++.+++.||++ +++.. .....+..+....+.... .+. .+... ......
T Consensus 283 ~~g~s~~~~~~~~~~~~~~~~~g-~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~--~~~-~~~~~-~~~~~~ 357 (452)
T PRK11273 283 VKHFALDKSSWAYFLYEYAGIPG-TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP--AGN-PTVDM-ACMIVI 357 (452)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc--ccC-hHHHH-HHHHHH
Confidence 37888999999998888888877 447899999994 44322 222222222222221110 011 11111 111111
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH-ccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA-GPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i-gP~i~G 137 (138)
........+.......+.+|+++||+++|+.+....++..+ ||.+.|
T Consensus 358 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g 405 (452)
T PRK11273 358 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 405 (452)
T ss_pred HHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence 11111112233456778999999999999999888887655 788765
No 162
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.34 E-value=8.6e-06 Score=63.15 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=71.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++.+.|...+..++..++.+ .+.+++.||+|+|+.+..+.....++...+.+.... . +.. ....+...
T Consensus 232 ~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~--~~~~l~~~ 304 (392)
T PRK10473 232 EQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH---A-VSL--FGITLICA 304 (392)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHH--HHHHHHHH
Confidence 3578999999999999999999985 577999999999999999888777766655443221 1 111 11112222
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+...+. ....+..|.++|+ |...+..++++.+||.+++
T Consensus 305 g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~ 344 (392)
T PRK10473 305 GFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWI 344 (392)
T ss_pred HHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHH
Confidence 33333322 2223344554443 5555666677777766554
No 163
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.33 E-value=1.7e-06 Score=67.78 Aligned_cols=119 Identities=9% Similarity=-0.007 Sum_probs=80.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh----hhhHH-HHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI----IGPII-ITRIAGVLSITLLTSYTYIAMLSG--FSLALFIN 84 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~----~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~ 84 (138)
.+.+|+|+.++|++++...+..++.|. +.+++.|| +|+|| .+..+...+.+.++++.+...... ...|. .
T Consensus 27 ~~~~g~s~~~~g~i~~~~~i~~~i~~p-~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~ 103 (437)
T TIGR00792 27 TDVLGLSAAFVGTLFLVARILDAITDP-IMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA--Y 103 (437)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhccc-hheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH--H
Confidence 456899999999999999999999976 77888887 66655 455666666666655544332211 11122 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhhhHHHHHHHHHhhHcc
Q 043916 85 CASVMKNVLSVSIITRLFLLQNRAV-EQHQRGAANGLVMTVVSLTKTAGP 133 (138)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~~li~~~~-p~~~~G~~~G~~~s~~sl~r~igP 133 (138)
....+..++.++..+...++..+.. +++||++.++..+....+|..+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~ 153 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA 153 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445555555555677777766 469999999998887777765543
No 164
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.32 E-value=1.1e-05 Score=65.27 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh---H-HHHHHHHHHHHHHHHHH
Q 043916 22 VGQVLAISGFNLLFSQLT---LYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG---F-SLALFINCASVMKNVLS 94 (138)
Q Consensus 22 ig~~~~~~g~~~~~~q~~---~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~---~-~~~~~l~~~~~~~~~~~ 94 (138)
.++..+.+++..++.+.. .++++.||+++.+.+.+++.+..++++.++......+ . ..| .+....++.++++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~-~~~~~~~l~~~ge 396 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVN-WLIASYGLQSIGE 396 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HHHHHHHHHHHHH
Confidence 556667788777766442 2478888888889999999999999988877654311 0 122 2345677889999
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHc
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAG 132 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ig 132 (138)
.+..|...+++.+.+|++.||+++|++....+++..++
T Consensus 397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876655555544
No 165
>PRK09669 putative symporter YagG; Provisional
Probab=98.30 E-value=1.5e-05 Score=63.21 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 22 VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRL 101 (138)
Q Consensus 22 ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 101 (138)
....+...+....+.+..+.+++.||+|+|+.++.+.....+.....-+.. .+. .|. +.....+.+++.+...|..
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP--PSN-VWL-IFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--cch-HHH-HHHHHHHHHHHHHHHHHHH
Confidence 333333445555556688889999999999999988776654333222211 111 122 2234456778888888999
Q ss_pred HHHHhhcccchh-------hhhhhhHHHHHHHHHhhHccCCcC
Q 043916 102 FLLQNRAVEQHQ-------RGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 102 ~~li~~~~p~~~-------~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+++++.++.+| .|...|.......++.++||.++|
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987332 456778888889999999998876
No 166
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.29 E-value=2.6e-05 Score=60.53 Aligned_cols=119 Identities=8% Similarity=-0.034 Sum_probs=80.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|+|+.+.|+..........+. ..+.+++.||++++.................+...... ..|. +.....+...+
T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~g 312 (394)
T PRK11652 237 VLGLSSMTVSILFILPIPAAFFG-AWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVM--NVWT-LLVPAALFFFG 312 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHH-HHHHHHHHHHH
Confidence 37899999999988887777766 55778999999844333322222222222222111100 1122 22334556677
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...|..++...+..| +++|+..++.++...++..+||.++|
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999998888886 58899999999999999999998765
No 167
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.29 E-value=1.7e-05 Score=62.59 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-GFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~ 91 (138)
..+|++..+.+...+.......+.|. +.+++.||+++|+....+..+..+.. .|...... ....+..+ ....+-.
T Consensus 272 ~~~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~ 347 (432)
T PRK10406 272 NTAGMHANVASGIMTAALFVFMLIQP-LIGALSDKIGRRTSMLCFGSLAALFT--VPILSALQNVSSPYAAF-GLVMCAL 347 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHcCCcHHHHH-HHHHHHH
Confidence 34788999999999998888888866 55899999999998776655433222 12111000 00011111 1111112
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL 127 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl 127 (138)
...+...+....++++..|+|.||+..|+.......
T Consensus 348 ~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~ 383 (432)
T PRK10406 348 LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA 383 (432)
T ss_pred HHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence 222333445677889999999999999998776553
No 168
>PRK10133 L-fucose transporter; Provisional
Probab=98.24 E-value=1.7e-05 Score=63.11 Aligned_cols=116 Identities=8% Similarity=0.015 Sum_probs=85.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
++.+|+|+.+.|+.+..+++...+. -++.+++.||+|++|+.+.+..+......+..+... . +. .....+..
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG-~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~--~~--~~~~~l~g 358 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIG-RFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---H--VG--LIALTLCS 358 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---h--HH--HHHHHHHH
Confidence 4568999999999999999999998 457899999999999999887766555444332221 1 11 12334567
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+..+|..++...+..|+ +.|++.++.. ....+-.++|.+.|
T Consensus 359 lg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G 402 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_pred HHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHH
Confidence 88999999999999998765 5677888775 34456667766544
No 169
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.18 E-value=6.6e-06 Score=65.08 Aligned_cols=118 Identities=8% Similarity=-0.027 Sum_probs=69.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL--TSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..|+|+.+.++.....++...+.+. +.+++.||+++++....+........ .+......... .+... .... .
T Consensus 281 ~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~--~ 354 (438)
T TIGR00712 281 VKHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN--PLVDM-ICMI--V 354 (438)
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc--hHHHH-HHHH--H
Confidence 4789999999999999998888854 77999999965432222222111111 11111100001 12111 1111 1
Q ss_pred HHHHHHHH--HHHHHHhhcccchhhhhhhhHHHHHHHHH-hhHccCCcC
Q 043916 92 VLSVSIIT--RLFLLQNRAVEQHQRGAANGLVMTVVSLT-KTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p--~~~~li~~~~p~~~~G~~~G~~~s~~sl~-r~igP~i~G 137 (138)
.+.....| .......+..|+++||+++|+.++...++ .++||.+.|
T Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G 403 (438)
T TIGR00712 355 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 403 (438)
T ss_pred HHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence 22222222 22346778899999999999999988876 578998876
No 170
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.16 E-value=5.3e-06 Score=67.50 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=94.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..++.+.+|++|+.+.......+. ..+...+.||+|.|.+...|..+...++++..+.+.. |..++..-++-++
T Consensus 74 ~~f~~s~~~~~~i~sl~~~~~~~~-gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i-----~~l~lt~gvi~G~ 147 (509)
T KOG2504|consen 74 DYFGSSSSQIAWIGSLLLGVYLLA-GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSL-----WQLYLTFGVIGGL 147 (509)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHh-ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHhhc
Confidence 357788999999999999888887 7788999999999999999999999999998888763 6555566667788
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP 133 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP 133 (138)
|.++.+.....+++++. +++|+.++|+..+..++|-.+=|
T Consensus 148 G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~ 187 (509)
T KOG2504|consen 148 GLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFP 187 (509)
T ss_pred cchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHH
Confidence 88888887888888666 67999999999888777655433
No 171
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.16 E-value=7.2e-05 Score=58.41 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=94.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
..+++|+|.++.|++-+.--+....+ .+..|++.||+|+.|.+.+++.+.+.+.++=+... -..+.....+.
T Consensus 38 Ir~~~gls~s~aGlLTtLPll~fg~~-ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~-------~~~L~~gt~l~ 109 (395)
T COG2807 38 IRQDLGLSFSVAGLLTTLPLLAFGLF-APAAPRLARRFGEERSLFLALLLIAAGILIRSLGG-------LPLLFLGTLLA 109 (395)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 34689999999999999999999998 77889999999999999999998888766443321 12344555666
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.++-+...-...+++.+..| ++.|.++|++......+.++++.+
T Consensus 110 G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~l 153 (395)
T COG2807 110 GAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAAL 153 (395)
T ss_pred HhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhh
Confidence 77778888888899999996 588999999999999988887754
No 172
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.14 E-value=1.8e-05 Score=64.08 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-------HHHHHHHHHHHHHHHHhh----hhhhhh-HHHHHHHHHHHHHH
Q 043916 23 GQVLAISGFNLLFSQLTLYPYVERIIGPII-------ITRIAGVLSITLLTSYTY----IAMLSG-FSLALFINCASVMK 90 (138)
Q Consensus 23 g~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~p~----~~~~~~-~~~~~~l~~~~~~~ 90 (138)
.++.+.+.+..++. ..+..++.+|+++|+ .+.+|+.+...+++.+.. .....+ ...|. +.....+.
T Consensus 312 ~~~~~~n~~~iii~-~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~-~i~~~~l~ 389 (489)
T PRK10207 312 VSFQALNPFWVVVA-SPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWF-IVLVYLFQ 389 (489)
T ss_pred HHHHhHhHHHHHHH-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH-HHHHHHHH
Confidence 34445565666555 556788999998886 366677776666543311 111111 12233 23566788
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
++++.+..|...+.+.+.+|++.+|.++|+++...++|..+|-.+
T Consensus 390 g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l 434 (489)
T PRK10207 390 SLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYV 434 (489)
T ss_pred HHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887544
No 173
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.13 E-value=5.2e-05 Score=60.77 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=82.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916 18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI 97 (138)
Q Consensus 18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 97 (138)
+.++.++..+..++..++.+ ++.+++.||+|+|+.+..+..+..+..+.+.+.........|. +.....+..++.+..
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~g~~~~~~ 341 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTL-ILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL-IVIAGILLNIGTALF 341 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHHHHHHH
Confidence 46678888888888888884 5779999999999999988876665554443221111111122 223445566777878
Q ss_pred HHHHHHHHhhcccc-------hhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 98 ITRLFLLQNRAVEQ-------HQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 98 ~p~~~~li~~~~p~-------~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+...+++++.++. ++.|...|......-++.++||.+.|
T Consensus 342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999873 22344889988888899999887765
No 174
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.12 E-value=1.7e-05 Score=60.47 Aligned_cols=112 Identities=15% Similarity=0.017 Sum_probs=73.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
..+|+++.+.|+.....++...+.+ .+.+++.||+|+|+....+.........++.+.....+. .+. ......+..+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 330 (366)
T TIGR00886 254 DQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLS-LAV-FIVLFVALFF 330 (366)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcch-HHH-HHHHHHHHHH
Confidence 3589999999999999999888884 477999999999988887776665555444332110001 111 1122223334
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHH
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLT 128 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~ 128 (138)
+.+...+....++.+..| +++|+++|+.++...+|
T Consensus 331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 444445556666676665 79999999988776543
No 175
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.12 E-value=1.9e-05 Score=63.83 Aligned_cols=113 Identities=15% Similarity=0.055 Sum_probs=86.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
..-+........+.+-+...+. .++++.+.||+|||+++..+..+..+.-+...++.+. ..+...+++.+++.
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG-~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~------~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVG-SLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY------WMFLIFRFLSGFFG 185 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHH-HhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHhhc
Confidence 3445555556666666666665 6688999999999999999999998887777766553 24557888888888
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
+........++.+..++++|+.+..+ ......+..++|+.
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~ 225 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAG 225 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHH
Confidence 88888999999999999999999999 44444444444443
No 176
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.11 E-value=5.5e-05 Score=59.69 Aligned_cols=127 Identities=12% Similarity=0.024 Sum_probs=100.9
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916 8 SLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS 87 (138)
Q Consensus 8 ~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 87 (138)
+|+-..-||+++.|...+-+..+....+.-......+.+|.++++...+++....+++.+.-+.....+ .|. +-...
T Consensus 232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--~~~-~~~~~ 308 (403)
T PF03209_consen 232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--PWL-FRPGV 308 (403)
T ss_pred CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--chH-HHHHH
Confidence 566667899999999999999998888774444455666899999999999999888877665544322 232 33455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++..++.+....+..++..+.+++++.|..+|.+...++++|.+|-.+||
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66688888888888888888999999999999999999999999877765
No 177
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.10 E-value=1.6e-05 Score=63.00 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=90.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.+.+|++..|+........+..++. .++.|++.+|+|.|+++..++.++.+..+..-+.... ...|.. -.+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg-~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~--~~f~i~----gll~g 352 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALG-AIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE--LDFWIL----GLLVG 352 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc--HHHHHH----HHHHH
Confidence 3579999999999998888888888 6689999999999999999988877665433222221 112321 12334
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
...+-...+.-++..+.+|+++-|+..|+.+...-.+..+||.+-
T Consensus 353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence 555666778899999999999999999999999888888888653
No 178
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.08 E-value=5e-05 Score=59.26 Aligned_cols=118 Identities=15% Similarity=0.051 Sum_probs=86.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV-LSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.+-|+|+.|-|.+.+...+..+.. .+..|.+.+|..++|-+..... ....++.-+-+... .....| ..+.+
T Consensus 236 i~~G~sa~~aG~llsl~~l~~~~~-~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~-~~~~lw------~~llG 307 (395)
T COG2807 236 IDRGLSAAEAGSLLSLMQLAQLPT-ALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG-QLPILW------ALLLG 307 (395)
T ss_pred HHcCCCHHHhhhHHHHHHHHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-hHHHHH------HHHHh
Confidence 456999999999999999999998 6688999998887775554333 33333222211111 011223 24567
Q ss_pred HHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 92 VLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
.+.+..||...++++..++ +++-++..|+.|+...+=.++||.+.|+
T Consensus 308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 8889999988888887776 4899999999999999999999998774
No 179
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.99 E-value=2.7e-05 Score=59.57 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=76.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
+..+|+|+.+.|-+.+..=...++. ..+++.+.|++|.+-.++.+-.+..+.- ...-+ +.+ ..|..+ .+.
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~-spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-t~l---sPy~~m----~~l 362 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVL-SPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-TFL---SPYTSM----TFL 362 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhh-hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-hhc---cHHHHH----HHH
Confidence 4569999999998877766666665 6788999999998877776554433321 11111 111 123322 222
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
++.....--+.--.+...+|+|+.|++.|..||.+.+|-++-|+++|.
T Consensus 363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 222222222233445566789999999999999999999999999873
No 180
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.98 E-value=0.0001 Score=57.44 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+....++...++.++..|+|.||+..|+.++...++..++|.+.|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~ 337 (368)
T TIGR00903 291 GLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM 337 (368)
T ss_pred HHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence 34455566778889999999999999999999999999988887653
No 181
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00025 Score=57.44 Aligned_cols=109 Identities=8% Similarity=-0.017 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 22 VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRL 101 (138)
Q Consensus 22 ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 101 (138)
.+.+.+.+-+..++. .+..+++.||+|+|..+.++..+...+-+++-+...... .-.+.+.+.+.++..+......
T Consensus 62 wS~~vs~f~iG~~~G-s~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~---~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIG-SFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS---FEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhHHHHHHH
Confidence 445556666667776 557899999999999999888888777666655444321 2245578888888888888899
Q ss_pred HHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 102 FLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 102 ~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
..++++.+|++.||.+.-+.|...++|..+|-.
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~ 170 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQV 170 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888733
No 182
>PRK09669 putative symporter YagG; Provisional
Probab=97.93 E-value=2.7e-05 Score=61.75 Aligned_cols=121 Identities=7% Similarity=-0.043 Sum_probs=77.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh----hhhHHHHH-HHHHHHHHHHHHHhhhhhhh--hHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI----IGPIIITR-IAGVLSITLLTSYTYIAMLS--GFSLALFI 83 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~----~g~~~~~~-~~~~~~~~~~~~~p~~~~~~--~~~~~~~l 83 (138)
..+.+|+|+.++|.++...-+..++.+. +.+++.|| +|+||-+. ++.....+.+.+.-..+... +...|..
T Consensus 36 ~t~~~gls~~~~g~i~~i~~i~dai~dp-~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~- 113 (444)
T PRK09669 36 YTDVFGLSAAIMGTMFLVVRVLDAVTDP-LMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC- 113 (444)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcccc-eeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH-
Confidence 3456899999999999999999999965 77999998 67766555 44444444443322222111 1122332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccC
Q 043916 84 NCASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
...... ..+..+......++..+..+ ++||.+.++..+....+|..+++.
T Consensus 114 ~~~~l~-~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~ 164 (444)
T PRK09669 114 VTYILL-SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV 164 (444)
T ss_pred HHHHHH-HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 33333444446678888774 589999999988888887777654
No 183
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.93 E-value=0.00014 Score=56.49 Aligned_cols=120 Identities=7% Similarity=-0.140 Sum_probs=70.5
Q ss_pred CCCCChhHHHHHH--HHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVL--AISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLS-ITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 14 glg~s~~~ig~~~--~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
+.|.|.+|+|... +..-....+.+.+.-++..||+|+||.+.+...+. ..................|.. ....+.
T Consensus 30 ~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 107 (390)
T TIGR02718 30 EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAV--GLLACA 107 (390)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHH--HHHHHH
Confidence 3589999999973 44444444553433345678899999876555332 211111111100011112322 223334
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
....+...+....+..+..++++++..++......++|..+|+..
T Consensus 108 ~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~ 152 (390)
T TIGR02718 108 SLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666667778788888888888888888877778888887753
No 184
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.89 E-value=1.7e-07 Score=73.81 Aligned_cols=115 Identities=8% Similarity=-0.007 Sum_probs=94.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916 18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI 97 (138)
Q Consensus 18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 97 (138)
+..+.++..+..-+...+. .++.+.+.||+|||+.+..+..+..++.++..+.+...+ +..+...+.+.+++.+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G-~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVG-ALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNN---FWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred hHHHHHHHHHHHHhhhccc-ccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc
Confidence 4567888888888888888 668899999999999999999999888887777652101 223456778888888888
Q ss_pred HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 98 ITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 98 ~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
.+....++++.+|+++||+...+.+....+|..++..++
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998888887776553
No 185
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.86 E-value=7.9e-06 Score=65.45 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=88.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF-SLALFINCASVMKNVLS 94 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~ 94 (138)
++++.--+.+-.+.-+..++.|+ +++++.||+|+|++|...+.+..+..+...+....... .....+.+.+.+.++|-
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl-~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQL-FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 47778888888888899999998 77999999999999999999888887644432221111 12223457788888899
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHc
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAG 132 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ig 132 (138)
+.-+|...++.|+.+....||+..+..-+.+.+|-..|
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 99999999999999999999997776655555554443
No 186
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.83 E-value=0.00097 Score=53.41 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG----FSLALFINCASVMKN 91 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~l~~~~~~~~ 91 (138)
|+++.++|..-+...+..+.. .+++|++.||+|..|.-.++...-.....+.-..-..++ ......+....++-.
T Consensus 289 G~s~~~igi~R~~gav~Gl~g-T~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLG-TWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 899999999999988888887 779999999999998777665533222111111111111 111122223333333
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i 131 (138)
+|-=..--+.+-++-+.+|++|||+++|+-.|.+++.-.+
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll 407 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL 407 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence 3433333467788888999999999999999999876543
No 187
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.82 E-value=0.00012 Score=58.91 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=62.3
Q ss_pred HhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh
Q 043916 38 LTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAA 117 (138)
Q Consensus 38 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~ 117 (138)
.++..++.||+|+|+++..+..+..+...++.+.........+. ...............|....+.++..|++.||+.
T Consensus 352 ~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~ 429 (502)
T TIGR00887 352 YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFL--AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTA 429 (502)
T ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHH
Confidence 34668899999999998887766665554443322100000011 1111111112222334556777999999999999
Q ss_pred hhHHHHHHHHHhhHccCCcC
Q 043916 118 NGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 118 ~G~~~s~~sl~r~igP~i~G 137 (138)
.|+.+....++..++|.+.|
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~ 449 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFL 449 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhh
Confidence 99999999999999987654
No 188
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00064 Score=55.52 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=93.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..+++..|...+++..|+...+..+ +.+++.|+.. .+.++.+++....+..+..|+.+... .+....++.+
T Consensus 327 ~~g~~~~~aa~l~Siigi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~------~l~~~~~~fG 399 (509)
T KOG2504|consen 327 SLGLSSNDAAFLLSIIGVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV------GLIVFSILFG 399 (509)
T ss_pred hcCCChhhhHHHHHHHHHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHH
Confidence 6899999999999999999999965 7899999988 55677777777777777888776532 2223333445
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
...+........++.+.++.|+...+.|+..-..+++-.+||+++|+
T Consensus 400 ~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~ 446 (509)
T KOG2504|consen 400 FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL 446 (509)
T ss_pred HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence 55555555555788899999999999999999999999999999884
No 189
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.79 E-value=0.0021 Score=44.65 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 043916 40 LYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANG 119 (138)
Q Consensus 40 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G 119 (138)
+.|.+.+++|+|+...++...+++-....-.. .+..++..-.+.+++.+..+.+--..+++..++|++++-.|
T Consensus 56 ~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ 128 (156)
T PF05978_consen 56 FAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG 128 (156)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence 56999999999999999999887654332111 12344566677789999999999999999999999999999
Q ss_pred HHHHHHHHHhhHccC
Q 043916 120 LVMTVVSLTKTAGPA 134 (138)
Q Consensus 120 ~~~s~~sl~r~igP~ 134 (138)
+..+....+..+|.+
T Consensus 129 ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 129 IFWAIFQSSLIFGNL 143 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877754
No 190
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.78 E-value=7.6e-05 Score=58.86 Aligned_cols=113 Identities=9% Similarity=0.062 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT 99 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 99 (138)
...+.......+...+. .++.+++.||+|+||.+..+..+.....+.+.+... ++ .|. +.....+.+++.+..++
T Consensus 260 ~~~~~~~~~~~~~~~v~-~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~i~~~l~gi~~~~~~~ 334 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVG-SPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--GS-PWL-VLILFILAGIGYGAFFV 334 (428)
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--hh-HHH-HHHHHHHhHhhhccccc
Confidence 56677777777776766 778899999999999999999999998887766542 11 122 23445566777777778
Q ss_pred HHHHHHhhcccch-------hhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 100 RLFLLQNRAVEQH-------QRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 100 ~~~~li~~~~p~~-------~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+++.+..+.+ +.|..+|+.....-++.++++.+.|
T Consensus 335 ~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 335 IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888898888743 3577788877777777777766543
No 191
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.73 E-value=0.00065 Score=48.75 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT 99 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 99 (138)
.+.++..+...+...+.+ .+.+++.||+|+|+.+..+........+...+... . ..+ .+...+....++.+...|
T Consensus 39 ~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-V--GLA-LLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-c--hHH-HHHHHHHHHHhhhHHHHH
Confidence 578899999999998886 68899999999998888777653333333333332 0 112 223344446777788889
Q ss_pred HHHHHHhhcccc-hhhhhhhhHHHH-HHHHHhhHccCCc
Q 043916 100 RLFLLQNRAVEQ-HQRGAANGLVMT-VVSLTKTAGPAVR 136 (138)
Q Consensus 100 ~~~~li~~~~p~-~~~G~~~G~~~s-~~sl~r~igP~i~ 136 (138)
...+++.+..|+ ++|+...+.... ....+..++|.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 789999999988 5888888887554
No 192
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.71 E-value=0.00025 Score=57.00 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=69.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII-------ITRIAGVLSITLLTSYTYIAMLSGFSLALFINCA 86 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 86 (138)
.+|+++.+.+.+.+..++...+.+. +.+++.||+++|+ .......+..+...+++..... +.. ...
T Consensus 282 ~~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~-----~~~-~~~ 354 (476)
T PLN00028 282 RFGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSL-----GAA-IVV 354 (476)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchH-----HHH-HHH
Confidence 4799999999999999999999855 7799999998752 2222222222222333332211 111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
+.+...+.....+...+++.+. +++++|++.|+......++..++|.+
T Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 355 MILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred HHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHH
Confidence 2222333333444445555544 45799999999988777777777754
No 193
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.69 E-value=0.00019 Score=57.52 Aligned_cols=117 Identities=9% Similarity=0.019 Sum_probs=75.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHH-HHHHHHHHHHHHHhhhhhhhh--HHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITR-IAGVLSITLLTSYTYIAMLSG--FSLALFIN 84 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~ 84 (138)
++.+|+++.++|.++....+..++.+. +.+.+.| |+|+||-+. ++.....+.+.++-.....+. ...|..
T Consensus 34 t~v~Gls~~~vg~i~~i~ri~dai~dp-~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~-- 110 (473)
T PRK10429 34 TDVVGLSVGLVGTLFLVARIWDAINDP-IMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC-- 110 (473)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhc-hheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH--
Confidence 455899999999999999999999955 7789999 669866554 455555555443321111111 112322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhH
Q 043916 85 CASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~i 131 (138)
....+..++..+......++..+..+ ++||.+.++.......++-.+
T Consensus 111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~ 158 (473)
T PRK10429 111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV 158 (473)
T ss_pred HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22233355566666667888888884 799999999865555555333
No 194
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.66 E-value=0.00041 Score=55.15 Aligned_cols=118 Identities=10% Similarity=-0.002 Sum_probs=69.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH--------HHHHHHH--HHHHHHHhhhhhhhhHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT--------RIAGVLS--ITLLTSYTYIAMLSGFSLALF 82 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~--------~~~~~~~--~~~~~~~p~~~~~~~~~~~~~ 82 (138)
..+|++..+.|+..+...+...+. ..+.+++.||+++++.. ..+.... .......+... .. .+..
T Consensus 290 ~~~g~s~~~~g~~~~~~~~~~~i~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~ 364 (465)
T TIGR00894 290 WVLRVSGKENGLLSSLPYLFAWLC-SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS---AA-FYLT 364 (465)
T ss_pred HHhCcChHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc-hHHH
Confidence 347899999999999888888887 45789999988754211 1111111 11111111111 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 83 INCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 83 l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+.+...+.+...+.......+.+|+ .+|.++|+.+....++..++|.+.|
T Consensus 365 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g 417 (465)
T TIGR00894 365 -IIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAG 417 (465)
T ss_pred -HHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1122222233333334444444455655 8999999999999999999998766
No 195
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00062 Score=55.23 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=86.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHH--HHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFS-LAL--FINCASVM 89 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~--~l~~~~~~ 89 (138)
..-|++.++.-+.-...|....++ .++.+.+.||+|||.+...+..+.....+++-....+.+.. .|. .......+
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~-t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~ 376 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLS-TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL 376 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345788888889899999999998 66889999999999999999998888777666554444322 121 11122222
Q ss_pred HHH-HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916 90 KNV-LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 90 ~~~-~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i 131 (138)
... .+....|.-.-+.++.+|++.|.+++.+...++.+.+.+
T Consensus 377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi 419 (485)
T KOG0569|consen 377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFI 419 (485)
T ss_pred HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence 222 222234777889999999999999999999988877654
No 196
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00012 Score=57.87 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=80.2
Q ss_pred EEeeeecCCCCCCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHH--HHHHHHHHHHHhhhhhhhhHH
Q 043916 2 FSLWAVSLRKYGGLSYSTK-NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIA--GVLSITLLTSYTYIAMLSGFS 78 (138)
Q Consensus 2 ~pl~~~~~~~~gglg~s~~-~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~ 78 (138)
+|+|.... +. ++. |+|..+--..+.+.+. ..++..+.||+++.|.+..+ ++.........|+.+...+
T Consensus 293 lslwm~e~-----m~-~p~w~~G~~fLp~~~~y~ig-~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~-- 363 (464)
T KOG3764|consen 293 LSLWMLET-----MF-TPGWEVGLAFLPASLSYAIG-TNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ-- 363 (464)
T ss_pred cHHHHHHh-----cc-CCCcceeeeecccccchhcc-CchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH--
Confidence 34555555 44 444 8888888899999988 77999999999966644443 3333444455565554332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916 79 LALFINCASVMKNVLSVSIITRLFLLQNRA--VEQHQRGAANGLVMTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~p~~~~li~~~--~p~~~~G~~~G~~~s~~sl~r~igP~i~G~ 138 (138)
.|.-.....+.-...++...|...-++... ..-+.-|.+-++.+..-+++-++||.++|.
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~ 425 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGS 425 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccch
Confidence 232211122222233444455444444322 112467999999999999999999999984
No 197
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.54 E-value=0.00088 Score=55.66 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=77.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
.++| ++.+..|+-+.+.+...+.+ .+.+++.|.||||..+..+.++..++.+...-+++.. .+.....+.++
T Consensus 72 ~diG-~~~~~~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~------~~iag~~l~Gv 143 (599)
T PF06609_consen 72 ADIG-GSDNWSWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN------TFIAGMVLYGV 143 (599)
T ss_pred HhcC-CCccchHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH------HHHHHHHHHHH
Confidence 3455 35778888888999888885 4789999999999999999999999998887766643 23345556666
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHH
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMT 123 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s 123 (138)
+.+... .....+++..|.+.|+...++...
T Consensus 144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 144 GAGVQE-LAALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred hhHHHH-HHHHHHHHhcccchhhhHhHHHHH
Confidence 655554 456668999999888876665543
No 198
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.52 E-value=0.0015 Score=51.60 Aligned_cols=112 Identities=9% Similarity=0.098 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSV 95 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 95 (138)
+.+..+.+..++..-....+. =++..++.||++++|++..+........++.++.... . . .....+...+.+
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vG-R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-----~-~-~~~l~~~glf~s 336 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFIS-RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH-----V-G-LYCLTLCSAFMS 336 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-----H-H-HHHHHHHHHHHH
Confidence 444444444444444444555 4466899999999999998888888777777764331 1 1 123344567788
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 96 SIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 96 ~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+|...++..+..+++..-..-++..+. .|-++.|.+.|
T Consensus 337 ~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G 376 (410)
T TIGR00885 337 LMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQG 376 (410)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHH
Confidence 88899999999999877665555655544 88888887755
No 199
>PRK09848 glucuronide transporter; Provisional
Probab=97.50 E-value=0.00081 Score=53.32 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=72.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh----hhHHHH-HHHHHHHHHHHHHHhhhh-hhh--hHHHHH
Q 043916 10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII----GPIIIT-RIAGVLSITLLTSYTYIA-MLS--GFSLAL 81 (138)
Q Consensus 10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~----g~~~~~-~~~~~~~~~~~~~~p~~~-~~~--~~~~~~ 81 (138)
+.++.+|+++.++|.+++...+..++.+. +.+++.||. |+||.+ ..+.....+...++-... ... ....|.
T Consensus 34 y~~~~~gl~~~~~g~~~~~~~~~~~~~~~-~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 34 YYTDVAGVGAAAAGTMLLLVRVFDAFADV-FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhh-hheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 34456899999999999999999999955 779999986 667755 333332322222210011 111 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHH-----HHHHhhHccCC
Q 043916 82 FINCASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTV-----VSLTKTAGPAV 135 (138)
Q Consensus 82 ~l~~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~-----~sl~r~igP~i 135 (138)
. ....+..++.++..+...++.....+ ++||.+.++.-+.. ..++-.++|.+
T Consensus 113 ~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i 170 (448)
T PRK09848 113 Y--LTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSI 170 (448)
T ss_pred H--HHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22234455666666666777666555 47899887766533 23445555544
No 200
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.43 E-value=0.0011 Score=53.40 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=77.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-----hHHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-----PIIITRIAGVLS-ITLLTSYTYIAMLSGFSLALFIN 84 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-----~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~l~ 84 (138)
....+|+|+.|++...+...+...+- . +..++.||++ +|+...++..+. ...+..++.... . ... ..
T Consensus 52 l~~~lg~s~~~i~~~~sl~~lpw~~K-~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~---~-~~~-~~ 124 (468)
T TIGR00788 52 LTDDLGLDGARYQRLVGLSSLGWALK-P-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVS---S-AKV-AA 124 (468)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH-H-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccc---h-HHH-HH
Confidence 34569999999999999999999985 4 4899999997 555555555544 233333332211 1 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHH---HHHHHHHhhHccCCcC
Q 043916 85 CASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLV---MTVVSLTKTAGPAVRG 137 (138)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~---~s~~sl~r~igP~i~G 137 (138)
..+.+.+++.+...++...+..+..+ |+++..+++. .....+|..+|+.++|
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 24556677888888899999999998 6665443333 2233467777776665
No 201
>PRK11462 putative transporter; Provisional
Probab=97.42 E-value=0.0011 Score=53.07 Aligned_cols=121 Identities=10% Similarity=-0.038 Sum_probs=78.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh----hhhHHHHHHHH-HHHHHHHHHHhhhhhhh--hHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI----IGPIIITRIAG-VLSITLLTSYTYIAMLS--GFSLALFIN 84 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~----~g~~~~~~~~~-~~~~~~~~~~p~~~~~~--~~~~~~~l~ 84 (138)
.+.+|.++..+|.++...-+..++... +.+.+.|| +|+||-+.... ....+.+.++-.....+ +...|..
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp-~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~-- 113 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDP-CMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA-- 113 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhh-hheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH--
Confidence 356899999999999999999999965 66878774 78888776533 34444443332222111 1122332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCC
Q 043916 85 CASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
....+..++..+..-...++..+..+ +|||.+.++..+....++..++|.+
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222244444444457778888877 5999999999988888877666543
No 202
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.39 E-value=0.0017 Score=51.45 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=62.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-PIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.|+|..|||.+++...+..++.|. +.+.+.||.+ ++|.+.++.....+........+.. |.. ...+.+..+.
T Consensus 32 ~G~s~~qIG~l~a~~~~~~i~~~~-~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f-----~~~-~~~~~l~~~~ 104 (400)
T PF03825_consen 32 RGFSGTQIGILLAVGPLARIVSPP-FWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF-----WWL-FVIMLLFSFF 104 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH-----HHH-HHHHHHHHHH
Confidence 479999999999999999999966 6688899875 6777777777666655444433221 322 2334444556
Q ss_pred HHHHHHHHHHHHhhccc
Q 043916 94 SVSIITRLFLLQNRAVE 110 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p 110 (138)
.....|...++..+...
T Consensus 105 ~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 105 FSPTMPLSDSIALSYLG 121 (400)
T ss_pred HccHHHHHHHHHHHHcc
Confidence 66667777777777765
No 203
>PRK11462 putative transporter; Provisional
Probab=97.38 E-value=0.0044 Score=49.71 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043916 19 TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSII 98 (138)
Q Consensus 19 ~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 98 (138)
....+.++...++..++. ..+.+++.||++.|+.+..+.....+..+++.+... +. .+.. ....++..++.+...
T Consensus 262 ~~~~~~~l~~~~i~~iig-~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~~l~g~~~~~~~ 336 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIG-SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM--QA-SITM-FVFIFVIGVLHQLVT 336 (460)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch--hH-HHHH-HHHHHHHHHHHHHHH
Confidence 345566777777777777 567899999999999877555444333332222111 11 1111 112233344555555
Q ss_pred HHHHHHHhhcccc-------hhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 99 TRLFLLQNRAVEQ-------HQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 99 p~~~~li~~~~p~-------~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+...+++.+..+. ++.|...+.+....-++.++|+.++|
T Consensus 337 ~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 337 PIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777662 22344456655667777777776654
No 204
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.35 E-value=0.0032 Score=50.21 Aligned_cols=114 Identities=10% Similarity=0.086 Sum_probs=82.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS 96 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (138)
.+.+-+|++.+..-+.-+.. ..+.|++.||+|+|+.+.++..+..+=...+.+.++. | .+...-.+.++-..+
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~-m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~-----~-~i~~~klLH~~e~~l 328 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALM-MFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNP-----W-VISLIKLLHALEFPL 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SH-----H-HHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHH-HHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcch-----H-HHHHHHHHHHHHHHH
Confidence 34566888888877777777 7788999999999999999988887777777666542 2 233444454444456
Q ss_pred HHHHHHHHHhhcccchhhhhhhhHH-HHHHHHHhhHccCCcC
Q 043916 97 IITRLFLLQNRAVEQHQRGAANGLV-MTVVSLTKTAGPAVRG 137 (138)
Q Consensus 97 ~~p~~~~li~~~~p~~~~G~~~G~~-~s~~sl~r~igP~i~G 137 (138)
...+..-.+++..|++..+++..+. |...+++..+.+.++|
T Consensus 329 ~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 329 LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6668888999999999999999885 7777888777666554
No 205
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.34 E-value=0.0039 Score=50.77 Aligned_cols=114 Identities=11% Similarity=-0.002 Sum_probs=78.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-------hHHHHHHHHHHHHHHHHHHhhhhhhhh-----HHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-------PIIITRIAGVLSITLLTSYTYIAMLSG-----FSLA 80 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-------~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~ 80 (138)
.|++++ -.|..+.+.+..++. ..++.++=+|.. .-+-+.+|+.+..+++..+.+.....+ ...|
T Consensus 304 ~g~~ip---~~~~qslNp~~ii~l-~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~w 379 (493)
T PRK15462 304 FGYTVP---TAMFQSINAFAVMLC-GVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPL 379 (493)
T ss_pred cceeeC---HHHHHhHhHHHHHHH-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHH
Confidence 355544 456678888887776 555555534432 122467788888888877765443221 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHH-HHHhhHc
Q 043916 81 LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVV-SLTKTAG 132 (138)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~-sl~r~ig 132 (138)
++....+.++|+-+..|...+++++.+|++.||+.+|++.... +++..++
T Consensus 380 --l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~ 430 (493)
T PRK15462 380 --MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA 430 (493)
T ss_pred --HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999995533 5665544
No 206
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.33 E-value=0.0019 Score=48.16 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=79.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASV 88 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~ 88 (138)
.+..+|+|.+|+..+-+..-+...+ .++.+.+.|++|++-+..+|......+|..+=....-. +...|.. .+...
T Consensus 28 Lk~~l~~sq~~l~~l~~~~~~G~~~--G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~-~~~~~ 104 (250)
T PF06813_consen 28 LKSRLGYSQSQLNTLSTAGDIGSYF--GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM-CLFLF 104 (250)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhc--cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH-HHHHH
Confidence 3457999999999988888877765 45779999999999999999999999887664322110 1123433 23333
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i 131 (138)
+.+.+..+...+......+..| ++||++.|+.-+...++.++
T Consensus 105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence 4344444444443333335556 68999999998888777654
No 207
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0026 Score=51.41 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=71.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|.+..+..+.+...+...+.. ..+.|++.||+|+|+++.++..++.++...+=+... +. .+ .+.+...+..++
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~-~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~--~~-~~-l~~~~~~i~~~g 340 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIG-LILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA--GS-VV-LIVVALIIAGVG 340 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC--cc-hH-HHHHHHHHHHHH
Confidence 46777888888888888877776 678999999999999999999999998877665541 11 12 233444666788
Q ss_pred HHHHHHHHHHHHhhccc
Q 043916 94 SVSIITRLFLLQNRAVE 110 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p 110 (138)
.+...+..-+++.+.+.
T Consensus 341 ~~~~~~l~wam~~d~vD 357 (467)
T COG2211 341 TGIANPLPWAMVADTVD 357 (467)
T ss_pred hhccccccHHHhcchhh
Confidence 88888888889988877
No 208
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.28 E-value=0.0041 Score=50.45 Aligned_cols=109 Identities=10% Similarity=0.029 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhH---------------H-HHHHHHHH
Q 043916 24 QVLAISGFNLLFSQLTLYPYVERIIGP-IIITRIAGVLSITLLTSYTYIAMLSGF---------------S-LALFINCA 86 (138)
Q Consensus 24 ~~~~~~g~~~~~~q~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~---------------~-~~~~l~~~ 86 (138)
+.+..+.+...+. .++.|++.||+|+ |+++..+..+....+..+.+.++.+++ . .|..+ ..
T Consensus 309 ~~l~~~s~~~~i~-s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 386 (477)
T TIGR01301 309 FGLMLNSVVLGIT-SIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASAL-IV 386 (477)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHH-HH
Confidence 4455555555555 4578999999995 788899999999888888877653210 0 12222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc--hhhhhhhhHHHHHHHHHhhHccC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQ--HQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~--~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
..+.++.-+..+..=++++++..|+ +++|..+|+.+....+.+.+.-+
T Consensus 387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl 436 (477)
T TIGR01301 387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSL 436 (477)
T ss_pred HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHH
Confidence 3333444444444458899999984 67799999999999988876544
No 209
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.28 E-value=0.017 Score=45.21 Aligned_cols=101 Identities=9% Similarity=-0.025 Sum_probs=74.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
..|++.+||+.++...-....++ ..+.+.+.||+|+||.-..-..++....+..-. ++ ...+...+++-++.
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~-g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----~~---~~~L~~GRvlgGia 134 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIF-GTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----SN---YPVLLLGRVLGGIA 134 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----cc---cHHHHHHHHHHHHH
Confidence 47999999999998888888887 778899999999999888777777766542211 11 23456788888888
Q ss_pred HHHHHHHHHHHHh-----hcccchhhhhhhhHHH
Q 043916 94 SVSIITRLFLLQN-----RAVEQHQRGAANGLVM 122 (138)
Q Consensus 94 ~~~~~p~~~~li~-----~~~p~~~~G~~~G~~~ 122 (138)
....+.+-+++.- +-.|+|.++.+.+...
T Consensus 135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 8888888888873 3356677777666443
No 210
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.15 E-value=0.0058 Score=48.18 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=63.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhH-hhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVE-RIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~-~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
+.+|+++.+.|+..........+... +..++. |+.++| ...........+..++......... .+......+.+..
T Consensus 247 ~~~g~s~~~~gl~~~~~~~~~~i~~~-l~~~~~~~~~~~~-~~~~~~~~~~ig~~l~~~~~~~~~~-~~~~~~~~~~l~~ 323 (413)
T PRK15403 247 DAGGMTTSQFAWTQVPVFGAVIVANA-IVARFVKDPTEPR-FIWRAVPIQLVGLALLIVGNLLWPH-VWLWSVLGTSLYA 323 (413)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHH
Confidence 34789999999988777766666534 445544 444443 3222222222222221111100001 1212234555667
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+.+...|....... ...++.+|+++++........-.+++..+|
T Consensus 324 ~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g 368 (413)
T PRK15403 324 FGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGR 368 (413)
T ss_pred HHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 787888777764322 122334788888887777776666655443
No 211
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.13 E-value=9e-05 Score=58.89 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=65.0
Q ss_pred EeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH----HHHHH--HHHhhhhhhhh
Q 043916 3 SLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL----SITLL--TSYTYIAMLSG 76 (138)
Q Consensus 3 pl~~~~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~----~~~~~--~~~p~~~~~~~ 76 (138)
|+|..+. .|+|.+|+|.+++.+.+...+.|. +++.+.||+|.||-....... .++.+ +..|+... +
T Consensus 31 ~iWL~~~-----~GLs~~~iG~i~s~~~~~~l~~qp-~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~--n 102 (412)
T PF01306_consen 31 PIWLTQV-----AGLSGTEIGIIFSAGSLFALLAQP-VYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS--N 102 (412)
T ss_dssp HHHHHHH-----H---HHHHHHHHHHHHHHHHHTHH-HHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT--T
T ss_pred HHHHccc-----cCCCHHHHHHHHHHHHHHHHHHHH-hHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 4555543 799999999999999999999987 779999999977654433221 12222 12233221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 77 FSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.|..........++.-....|...+++.+.+.+ .+-=-|=.-.-.|+|-+++..++|
T Consensus 103 --~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G 159 (412)
T PF01306_consen 103 --FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAG 159 (412)
T ss_dssp ---HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhh
Confidence 121111111111222334456777777776642 222223333445566555555444
No 212
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.11 E-value=0.00054 Score=54.03 Aligned_cols=118 Identities=13% Similarity=-0.007 Sum_probs=82.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHHH-HHHHHHHHHHHHhhh-h-hhhh--HHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITRI-AGVLSITLLTSYTYI-A-MLSG--FSLAL 81 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~~-~~~~~~~~~~~~p~~-~-~~~~--~~~~~ 81 (138)
..+-+|.++..+|.++....+..++.+. +++.+.| |+|+||-+.. +.....+.+.++... . .... ...|.
T Consensus 28 ~~~~~gl~~~~~g~i~~~~~i~dai~dp-~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~ 106 (428)
T PF13347_consen 28 YTDVLGLSPALAGLILLVGRIWDAITDP-LIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWL 106 (428)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhcCC-cEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHH
Confidence 3456899999999999999999999965 7788888 8998886664 556666666555433 1 1111 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhH
Q 043916 82 FINCASVMKNVLSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 82 ~l~~~~~~~~~~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~i 131 (138)
. ....+..++..+..-...++..+..++ |||.+..+..+....+|..+
T Consensus 107 ~--~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l 155 (428)
T PF13347_consen 107 F--VFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL 155 (428)
T ss_pred H--HHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH
Confidence 2 222233556666666688899999885 89999999988877777653
No 213
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.04 E-value=0.0014 Score=53.75 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=78.0
Q ss_pred HhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh
Q 043916 38 LTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAA 117 (138)
Q Consensus 38 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~ 117 (138)
.+...++.+++|+.++...++.....=++.+.++.+ .|..+ -.-+++.+--+..+.++.+.+++.+||+.+.++
T Consensus 423 ~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n-----~W~vL-Pieilqgit~aliWaa~~sY~s~vaPp~l~at~ 496 (618)
T KOG3762|consen 423 YFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN-----PWMVL-PIEILQGITHALIWAAIISYASHVAPPGLRATA 496 (618)
T ss_pred HHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC-----chhee-eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Confidence 445569999999999999999999888887766654 25433 455688888889999999999999999999999
Q ss_pred hhHHHHH-HHHHhhHccCCcCC
Q 043916 118 NGLVMTV-VSLTKTAGPAVRGA 138 (138)
Q Consensus 118 ~G~~~s~-~sl~r~igP~i~G~ 138 (138)
+|+.|-. -.+|+.+|.+|||.
T Consensus 497 Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 497 QGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred HHHHHHHhcccCcchhhhhhhh
Confidence 9998765 46889999988873
No 214
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.02 E-value=0.0013 Score=52.28 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=83.6
Q ss_pred CEEeeeecCCCCCCCCCChhH--HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHH-HHHHHHHHHHHHhhhhhhhhH
Q 043916 1 IFSLWAVSLRKYGGLSYSTKN--VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRI-AGVLSITLLTSYTYIAMLSGF 77 (138)
Q Consensus 1 ~~pl~~~~~~~~gglg~s~~~--ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~p~~~~~~~~ 77 (138)
+||+|..+....+|.+....+ .|...++.++..++. ..+.+.+.|+-|+||-+.. ...+-.+....+-++.. +
T Consensus 37 ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~L-apiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~--~- 112 (438)
T COG2270 37 IFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALL-APILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP--G- 112 (438)
T ss_pred hhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC--C-
Confidence 467777777677666554443 788888999988888 6688899999997775544 33333333333333332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh
Q 043916 78 SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT 130 (138)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ 130 (138)
..|......+.+..++...+..-..+++.+..++++.|++.|..-....++..
T Consensus 113 s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~ 165 (438)
T COG2270 113 SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSV 165 (438)
T ss_pred chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccch
Confidence 12333445555666677777777899999999999999988877655555443
No 215
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.84 E-value=0.0045 Score=50.27 Aligned_cols=119 Identities=15% Similarity=0.044 Sum_probs=89.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGP-IIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
+.+.+.+.-|++.+...+..++. -+.+.+..+|.+. |+-+..+..+..++-+++..+...+....|. +.+++++.++
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~-~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~-mL~~R~l~Gv 142 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIF-SLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYL-MLVARILTGV 142 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhc-chhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHcCc
Confidence 47889999999999999999998 5578888888775 7788888888888888885555544333443 4467777676
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
+.+ .....-+.++.....++|-++.....-...++.++||.+
T Consensus 143 g~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 143 GVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred Ccc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 644 234578888888778888888888777777788888765
No 216
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.63 E-value=0.029 Score=44.56 Aligned_cols=123 Identities=13% Similarity=0.032 Sum_probs=80.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-----hHHHHHH-HHHHHHHHHHHHhhhhhhh-h--------H
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-----PIIITRI-AGVLSITLLTSYTYIAMLS-G--------F 77 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-----~~~~~~~-~~~~~~~~~~~~p~~~~~~-~--------~ 77 (138)
.+++....-.+.+.+.--+..- .+. .++..+|+.+ +|.-|++ +..........+|+....- . .
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~-~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRV-WFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHH-HhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 3455666655655555433333 233 4566778777 6665555 5555566667777655432 1 1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 78 SLAL-FINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 78 ~~~~-~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.|. .......+..++...+..+..+++.+.+|||+|+++.++..+..=+|-+++..+.|
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG 146 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332 33345556677778888899999999999999999999999998888887765443
No 217
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.60 E-value=0.008 Score=36.70 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLS 61 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~ 61 (138)
...|+|+.|+|.+.+..-+...+. -.+.+++.||++++|........+
T Consensus 28 ~~~Gl~~~~iGil~~i~~~~~~~~-~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 28 KQLGLSPSQIGILSAIRPLIRFLA-PPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCccHHHHHHHHHH
Confidence 357999999999999999999998 458899999999999877665543
No 218
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0084 Score=48.68 Aligned_cols=94 Identities=9% Similarity=0.037 Sum_probs=73.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 92 (138)
|+|+|.++.--+++.++...-++ ..+-+++.|| +|+||.+.++-.+..++.+.+...+.. + ...+...+.+-.+
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t-~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~-~---~~gl~i~L~~I~i 129 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLT-PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS-G---PGGLYIGLALIIV 129 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-c---ccHHHHHHHHHHh
Confidence 39999999888888888777776 5588999998 689999999999999999887765411 1 1123344555568
Q ss_pred HHHHHHHHHHHHHhhcccch
Q 043916 93 LSVSIITRLFLLQNRAVEQH 112 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~ 112 (138)
|.+..-|...+++.+..|++
T Consensus 130 G~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred ccccccccHHHHHHHhcCCC
Confidence 99999999999999999863
No 219
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.49 E-value=0.023 Score=45.98 Aligned_cols=104 Identities=11% Similarity=0.013 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043916 30 GFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTS-YTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRA 108 (138)
Q Consensus 30 g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~ 108 (138)
.+...+. -.+.+++.||+|++|+..++.....+.... +...........+... .......+..+....++.-++.+.
T Consensus 296 ~l~~~l~-rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~-~~~~~l~~~~G~gngsvfk~ip~~ 373 (462)
T PRK15034 296 PFIGAIA-RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFY-AVFMGLFLTAGLGSGSTFQMIAVI 373 (462)
T ss_pred HHHHHHH-HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhcccchHHHHhhHHH
Confidence 3444444 347799999999999998887755444321 1111110001112211 111222344455555677777776
Q ss_pred ccc---------------------hhhhhhhhHHHHHHHHHhhHccCC
Q 043916 109 VEQ---------------------HQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 109 ~p~---------------------~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.|+ .+-|.+.|+.....++|-.+-|.+
T Consensus 374 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~ 421 (462)
T PRK15034 374 FRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQA 421 (462)
T ss_pred HhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence 663 268899999998888877777643
No 220
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.44 E-value=0.015 Score=36.32 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM 73 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 73 (138)
...+.++|.+|.|++-+.+-+.+.+. .....++.++.++++.++.++....+.+..+.+.+.
T Consensus 18 M~~~~~ls~~~ag~lasaNy~GYL~G-Al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 18 MQADGGLSLSQAGWLASANYLGYLVG-ALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999998 667788888888999999999999988888887654
No 221
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.021 Score=46.25 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=74.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhh---------HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGP---------IIITRIAGVLSITLLTSYTYIAMLSGFSLALFI 83 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~---------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 83 (138)
+-+|+|.++.|+.-+.--+.+.++ -++.+.+.||+.. |-.-.++....++.++.+++...... +..+
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~-k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~---~~a~ 362 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIV-KFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHR---LLAV 362 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcc---hHHH
Confidence 449999999999999988888888 6688888888755 12223344444555555555443211 2221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 84 NCASVMKNVLSVSIITRLFLLQNRAV-EQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~~~li~~~~-p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
..+.+-....+...+... .|..- .|+.-|.++|+.|...+++..++|.+.|
T Consensus 363 -~~l~~~~~~~g~~~~Gf~--~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg 414 (466)
T KOG2532|consen 363 -ILLTIAIGLSGFNISGFY--KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVG 414 (466)
T ss_pred -HHHHHHHHHcccchhhhH--hhhhhccchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 111121222232322222 22222 4679999999999999999999999876
No 222
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.33 E-value=0.00051 Score=56.42 Aligned_cols=126 Identities=11% Similarity=0.032 Sum_probs=2.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-------------
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF------------- 77 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------- 77 (138)
....|+++++|.|++.+.+-+...++ ..+..+...|..+-|.+-++.++.+++.+++.+-+++.+.
T Consensus 29 iErRF~l~S~~~G~i~s~~di~~~~~-~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 29 IERRFGLSSSQSGLISSSYDIGSLVV-VLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence 34579999999999999999999998 6667788888888888888888888888776654443210
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH
Q 043916 78 -------------------------------SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS 126 (138)
Q Consensus 78 -------------------------------~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s 126 (138)
..+..+.+..++.++|+...+|.-.+.+-+.+++++-+.-.|+..+...
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~ 187 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence 0123455677788888899999999999999999999999999999888
Q ss_pred HHhhHccCCcC
Q 043916 127 LTKTAGPAVRG 137 (138)
Q Consensus 127 l~r~igP~i~G 137 (138)
+|.++|=++||
T Consensus 188 lGPa~Gf~lg~ 198 (539)
T PF03137_consen 188 LGPALGFLLGS 198 (539)
T ss_dssp -----------
T ss_pred ccHHHHHHHHH
Confidence 88888877776
No 223
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.005 Score=48.91 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=77.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG--FSLALFINCASVMK 90 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~~~~~~~ 90 (138)
..++.|+.+.|..-+...+...+.-. .-+++.||+|.+|+........++......+.....+ ...+... ......
T Consensus 247 ~~fg~~~~~Ag~~a~~f~~~g~l~Rp-~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~l 324 (417)
T COG2223 247 TQFGLSPVTAGLIAFLFPLIGALARP-LGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFV-AVFLAL 324 (417)
T ss_pred HhcCCChhhHHHHHHHHHHHHHHHHh-ccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHH-HHHHHH
Confidence 44999999999888888888888744 7789999999999998888877776655443321110 1111111 112222
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i 131 (138)
.+..+....++..++....| +|-|.++|+......+|-..
T Consensus 325 ~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 325 FVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccc
Confidence 34444444566777776665 48999999988877776533
No 224
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=96.26 E-value=0.0044 Score=49.17 Aligned_cols=91 Identities=7% Similarity=0.013 Sum_probs=62.9
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 043916 40 LYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANG 119 (138)
Q Consensus 40 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G 119 (138)
+..+++||+|+|+....++.++.+...+. ......+ ...+ ..... ..+....+...+...-+..|...|++..|
T Consensus 400 It~~iverlGRKkTMal~l~~f~iflfll--~~c~~rn-~~tv--llf~a-rafisg~fqvaYvYtPEVyPTavRatgvG 473 (528)
T KOG0253|consen 400 ITGVIVERLGRKKTMALSLILFGIFLFLL--TTCKTRN-AYTV--LLFTA-RAFISGAFQVAYVYTPEVYPTAVRATGVG 473 (528)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHhcCcc-hhHH--HHHHH-HHHHhchheEEEEecCcccchhhhhcchh
Confidence 45788999999999999998887765433 2221111 1111 11122 23444455667788888899999999999
Q ss_pred HHHHHHHHHhhHccCCc
Q 043916 120 LVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 120 ~~~s~~sl~r~igP~i~ 136 (138)
...++.-++.++.|+++
T Consensus 474 tcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 474 TCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhhhHHhhhhhhhhHHH
Confidence 99999999999999654
No 225
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.76 E-value=0.096 Score=41.89 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=80.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh----hHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 043916 9 LRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG----PIIITRI-AGVLSITLLTSYTYIAMLSGFSLALFI 83 (138)
Q Consensus 9 ~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g----~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l 83 (138)
++.++.+|+++.|+....+...+...+= ++++.+.|.+. +||-|.+ +..+.......+......... .. ..
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~K--p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s-~~-~~ 89 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSIK--PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS-AA-IA 89 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHHh--hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch-hh-hH
Confidence 3445679999999999999988888763 47788999874 4555444 444332333323222221111 11 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 84 NCASVMKNVLSVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+.+.+++.....-...+++.+.+. |+++|..+.......++|..++-.++|
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 234456677888888888888888875 345788888877777788777766655
No 226
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=95.75 E-value=0.45 Score=38.75 Aligned_cols=106 Identities=11% Similarity=-0.077 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSI-TLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT 99 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 99 (138)
-.++..++.++..++. .++.+.+.|+-+.||.+...+.... +....+-+. -++. |.......++-.++......
T Consensus 71 ~~~~~~sis~l~~all-~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v--~~~~--~~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 71 LWLYANSISGLLQALL-APFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV--SPGQ--WWLALVLFIIANVGYEASNV 145 (477)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh--Ccch--HHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888877 6677889999888876665544333 333333332 1222 22222333444556666666
Q ss_pred HHHHHHhhcccchhh--------------------------hhhhhHHHHHHHHHhhH
Q 043916 100 RLFLLQNRAVEQHQR--------------------------GAANGLVMTVVSLTKTA 131 (138)
Q Consensus 100 ~~~~li~~~~p~~~~--------------------------G~~~G~~~s~~sl~r~i 131 (138)
-..+++-+.+++|++ +++.|...+...+|..+
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v 203 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV 203 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH
Confidence 778888888888877 99999998888887655
No 227
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.58 E-value=0.31 Score=39.87 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhH-------HHHHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPI-------IITRIAGVLSITLLTSYTYIAMLSG-----FSLALFINCASV 88 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~-------~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~l~~~~~ 88 (138)
.-++..+.+-+..+++ ..++.++..+++++ .-+-+++.+...+++.+.......+ ...|. ++...+
T Consensus 325 p~~~fQslNp~~Iii~-~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~-lil~y~ 402 (498)
T COG3104 325 PPAWFQSLNPFFIILF-SPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWW-LVLSYV 402 (498)
T ss_pred CHHHHHhhCHHHHHHH-HHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHH-HHHHHH
Confidence 3456778888888877 66777777664433 4566677777777777766522111 12333 335677
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+++-+..|.-.+.+.+.+|+.-.+.+++++-..++.+..++-.+++
T Consensus 403 l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 403 LQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 8899999999999999999999999999999999999998888765554
No 228
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.40 E-value=0.37 Score=39.12 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHH
Q 043916 26 LAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG-------FSLALFINCASVMKNVLSVSII 98 (138)
Q Consensus 26 ~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~ 98 (138)
....++...+. ..+...+.||+|+|+++..+........+++........ ...|..+...............
T Consensus 335 ~~~~~~v~~~~-t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g 413 (513)
T KOG0254|consen 335 SIILGVVNFLG-TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWG 413 (513)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccc
Confidence 33444444444 334478999999999999999999888887765543321 1123333233223233333333
Q ss_pred HHHHHHHhhcccchhhhhhhhHHHHHHHHHh
Q 043916 99 TRLFLLQNRAVEQHQRGAANGLVMTVVSLTK 129 (138)
Q Consensus 99 p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r 129 (138)
|....+.++..|.+.|++..++..+.+.+..
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~ 444 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWN 444 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHHHHHHHHHHH
Confidence 4455688999999999999999888776654
No 229
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.37 E-value=0.028 Score=42.82 Aligned_cols=54 Identities=11% Similarity=-0.076 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 84 NCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
....++...|.++..++.+.++.+..|+|++.+.+++.|+..++|-.+||.+++
T Consensus 14 l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~ 67 (310)
T TIGR01272 14 LGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG 67 (310)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 355667788899999999999999999999999999999999999999999875
No 230
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=95.29 E-value=1.3 Score=36.13 Aligned_cols=119 Identities=7% Similarity=0.047 Sum_probs=83.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh-------------------
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG------------------- 76 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~------------------- 76 (138)
+-+.+++.++.+..-+.+.+.-..++.++.+|+++++++......+...+.++.+.-....
T Consensus 39 ~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~ 118 (472)
T TIGR00769 39 GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPG 118 (472)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchh
Confidence 4456889999888877766664668999999999999999988877777766655421100
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 77 F-------SLALFINCASVMKNVLSVSIIT-RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 77 ~-------~~~~~l~~~~~~~~~~~~~~~p-~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
. ..|..- ...+...+.+....+ ..-...|+..++||-.|..++.....+++-.+||.+
T Consensus 119 ~~~~i~~~~~W~~~-~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 119 FMGFIAILRIWSFA-LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred hHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012211 122233344444444 567888999999999999999999999988888754
No 231
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.08 E-value=0.27 Score=41.17 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT 99 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 99 (138)
+.++.....++...+.+ .+.+.+.++.++.|.. .++..+...+.-++..... .+...+. ...++.+++.+....
T Consensus 350 ~~~~~s~~~~fg~~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~-~n~~~~i---~~~~l~g~giG~~~~ 424 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP-DNKNAAI---AFLVLAGFGIGGILV 424 (599)
T ss_pred eeehhhhhHHHHHHHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC-CCcchHH---HHHHHHHHhHHHHHH
Confidence 56777777777777764 4667777777766655 3454444443344332211 1111121 223344556555555
Q ss_pred HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.......-.+|+|+.|++.|+..+.-++|.++|..+
T Consensus 425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 567777888999999999999999999998887543
No 232
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=94.86 E-value=0.48 Score=38.17 Aligned_cols=114 Identities=13% Similarity=-0.025 Sum_probs=71.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRI-AGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
.|+|..+.++..+.+-...+.. ..+.+++.||+- +|....+ ..+...+..+.+....+. + +.. ....+..
T Consensus 283 k~~s~~~a~~a~~lfE~agl~G-~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~--~--~~l--~~~~l~~ 355 (448)
T COG2271 283 KGFSLVKANWAISLFEVAGLPG-TLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNG--S--YLL--DAILLFI 355 (448)
T ss_pred cCCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCc--c--HHH--HHHHHHH
Confidence 7899999999999999999988 668899999964 4433322 222222322333322221 1 111 1122334
Q ss_pred HHHHHHHHH--HHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCC
Q 043916 92 VLSVSIITR--LFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAV 135 (138)
Q Consensus 92 ~~~~~~~p~--~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i 135 (138)
+|.....|. +-....+.+|++.-|++.|+...+..+ |.+.+-..
T Consensus 356 iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~ 402 (448)
T COG2271 356 IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP 402 (448)
T ss_pred HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence 455555563 233446779999999999999999999 66665443
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.61 E-value=0.19 Score=40.26 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=78.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhh-hh------hhHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIA-ML------SGFSLALFINCA 86 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~-~~------~~~~~~~~l~~~ 86 (138)
|.|+|+...|.+-....+..++. ..++.+.-++..-|+++.+..++..+..+.--... .. ++. |..+.-.
T Consensus 249 gp~fs~~f~~~~~~vg~~~~l~g-~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~--~f~lgd~ 325 (433)
T PF03092_consen 249 GPHFSPSFYGTLSIVGSIASLLG-ILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ--WFALGDT 325 (433)
T ss_pred ccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe--EEEEEhH
Confidence 77799999999996666666665 77888888888888888877776654433211110 00 011 2111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.+..+.+.+.+=....++.+.+|+..-|++.++..|...+|..++-.+
T Consensus 326 -~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~l 373 (433)
T PF03092_consen 326 -ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTL 373 (433)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444443478899999999999999999999999988776443
No 234
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=94.60 E-value=1.3 Score=35.84 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 23 GQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLF 102 (138)
Q Consensus 23 g~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 102 (138)
.......+...... .+.-....+++|+|.....+.....++++...+....... |....... +-..+.+..+-...
T Consensus 353 ~~~~~~~~~~~~p~-~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 428 (521)
T KOG0255|consen 353 YLNFTLSGLVELPA-YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG--WLHWILPL-LGKFFIGSAFNLIF 428 (521)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHH-HHHHHHHHHHHHHH
Confidence 33444444433333 3334578889999999999999888888877776543221 11111222 22334455555668
Q ss_pred HHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 103 LLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 103 ~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
...++..|...|..+.|.......++-+++|.+
T Consensus 429 ~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~ 461 (521)
T KOG0255|consen 429 LYSAELIPTVVRNTAVGAISAAARLGSILAPLF 461 (521)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999988864
No 235
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=93.91 E-value=0.32 Score=39.53 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043916 28 ISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNR 107 (138)
Q Consensus 28 ~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~ 107 (138)
..|+...+. ....+.+.||+|+|..+...+....+.-..+-+. + -|..+ ..-+.. +.+..+....+.+++
T Consensus 70 ~~~~~~~i~-s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----~--~~~~~--~~~l~g-~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 70 TAGLLTLIS-SPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----G--YWFFL--LLGLSG-GFSAIFSVGFAYVAD 139 (463)
T ss_pred hhHHHHHHH-HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----H--HHHhh--hccccc-chhhhhhhhhhheee
Confidence 335555554 7788999999999998887766543322222111 1 12221 111211 334555678888999
Q ss_pred cccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 108 AVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 108 ~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
....|+|-...|+....-..+..++|.+++
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~ 169 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGG 169 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999998875
No 236
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.76 E-value=2.3 Score=34.15 Aligned_cols=114 Identities=4% Similarity=-0.015 Sum_probs=81.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
-|++.+|+---.-..+.-.-+.+.++.-.+.|.++.|.+++++.+.......++-+...+. + +-+.-+..++..
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~----~--mq~~q~~yg~~~ 108 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL----A--MQLMQFFYGLAT 108 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH----H--HHHHHHHHHHHH
Confidence 7999999886555555555555577788999999999999999888888777766655432 1 112233333333
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
+. -.+..+.+-..+|+++--++-+...+..-.|+.+|-.+
T Consensus 109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 34567888888899999999999999999998887554
No 237
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=93.68 E-value=0.46 Score=37.99 Aligned_cols=111 Identities=11% Similarity=0.143 Sum_probs=73.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS 94 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (138)
.|.+.+|-....+.+=...++.- ++..++.+|+.+.|.+.+.........+...+++.. + ......+.+...
T Consensus 267 ~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~-----v--~~~~l~~ig~F~ 338 (422)
T COG0738 267 LGLNEQQAAYYLSFFWVGFMVGR-FIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV-----V--ALYALFLIGLFN 338 (422)
T ss_pred CCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh-----H--HHHHHHHHHHHh
Confidence 67888888888888877777774 466788889999998888776555555444444331 1 123445667889
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
+..+|.+.++..+..|+ ..+.-|..-.....|-++-|.+
T Consensus 339 simfPTIfslal~~l~~--~ts~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 339 SIMFPTIFSLALKNLGE--HTSVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred HHHHHHHHHHHHhccCc--cccccceeeeeheecchHHHHH
Confidence 99999999999999983 2222222223344444444443
No 238
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=93.26 E-value=1.3 Score=36.10 Aligned_cols=115 Identities=11% Similarity=-0.118 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHH-HHHHHHHHHHHHHH
Q 043916 18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLA-LFINCASVMKNVLS 94 (138)
Q Consensus 18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~-~~l~~~~~~~~~~~ 94 (138)
+.+..-|...++.+..+.+ .+..=|+.|++|.|....++...-.++-.+=-.. ..+ ....| .+......+.....
T Consensus 77 s~~~~~wlsmIym~v~vp~-gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is-s~p~v~~~f~~~l~~~Gq~iaa~Aq 154 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPF-GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS-SLPFVPPLFRRPLTHTGQSIAAAAQ 154 (480)
T ss_pred chHHHHHHHHHHHHHHHHH-hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc-cCccccccchhhhhHHhHHHHHHhh
Confidence 4555667777888888887 7777899999999999998888766654321111 111 01123 11112222222222
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
.+..-.=.-+..-+.|++||.+++-+..-.+.+|-++|-+
T Consensus 155 ~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 155 PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 2222222344566788999999998876665566555533
No 239
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=92.97 E-value=0.55 Score=38.23 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=72.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHHHHH-HHHHHHHHHHhhhhhhh--hHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITRIAG-VLSITLLTSYTYIAMLS--GFSLALFIN 84 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~~~~-~~~~~~~~~~p~~~~~~--~~~~~~~l~ 84 (138)
.+.+|+++...|.++.+.-+..++. =++.+.+.| |+|++|-+.+-. .-+++.+.++=..+..+ +...|..
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~-DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~-- 116 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAIT-DPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYAL-- 116 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHh-cchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHH--
Confidence 4568999999999999999999988 446676666 578888665543 33333332221122111 2222321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhH
Q 043916 85 CASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~i 131 (138)
....+..++-....-...++.....+ ++||-+.++.-+-....|..+
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l 164 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL 164 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344444444345666666666 499999999998888887543
No 240
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=92.24 E-value=0.75 Score=37.49 Aligned_cols=123 Identities=14% Similarity=0.039 Sum_probs=80.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhh---hhhhHhhhhhHHHHHHHHH-HHHHHHHHHhhhhhhhhH---------HHH-
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTL---YPYVERIIGPIIITRIAGV-LSITLLTSYTYIAMLSGF---------SLA- 80 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~---~~~l~~~~g~~~~~~~~~~-~~~~~~~~~p~~~~~~~~---------~~~- 80 (138)
+|.+.+..+.++...=+...++|-.+ ..+...|+|+||-++.+.. ...+...++++....... ..+
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 44444445555555555556666532 2355558999997776544 455666788887766421 112
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh-hhhHHHHHHHHHhhHccCCcC
Q 043916 81 -LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGA-ANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 81 -~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~-~~G~~~s~~sl~r~igP~i~G 137 (138)
....+...+.-+.........-+++.+.+.+++|-+ +|.......++|.++|=.+++
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 223344445555666667778999999988777777 999999999999999877764
No 241
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=90.19 E-value=2.9 Score=33.45 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 79 LALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
.|..+ ..++..++.++..+......+.+-.|+|+|.-.+|...-..++|-.++-.
T Consensus 335 i~ivf-~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgl 389 (402)
T PF02487_consen 335 IWIVF-VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGL 389 (402)
T ss_pred HHHHH-HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35443 44556677888888888999999999999999999988888888776643
No 242
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=90.13 E-value=0.0014 Score=51.60 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=61.8
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHHh--hhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Q 043916 40 LYPYVERIIGPIIITRIAGVLSITLLTSYT--YIAMLSGF--SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRG 115 (138)
Q Consensus 40 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p--~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G 115 (138)
+.-.+.||+|+|+++..+.....+....+. ........ ..+..+..........+....|....+..+..|.+.|.
T Consensus 305 ~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~ 384 (451)
T PF00083_consen 305 LAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS 384 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccc
Confidence 345889999999999998887777666553 11111110 01111111221222223233455668889999999999
Q ss_pred hhhhHHHHHHHHHhhHccCCc
Q 043916 116 AANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 116 ~~~G~~~s~~sl~r~igP~i~ 136 (138)
+..|+...+..++..++|.+.
T Consensus 385 ~~~~~~~~~~~i~~~i~~~~~ 405 (451)
T PF00083_consen 385 TGIGLSYAVGRIGGFIIPFLF 405 (451)
T ss_pred ccccccccccccccccccccc
Confidence 999999998888888877653
No 243
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=89.80 E-value=0.34 Score=40.75 Aligned_cols=54 Identities=7% Similarity=-0.052 Sum_probs=44.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTS 67 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~ 67 (138)
.+|+++.+.|++.....+...+.+.++.+++.||++ .++..+++.....+..++
T Consensus 360 ~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 360 QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 489999999999998888666666888999999988 678888888777776544
No 244
>PRK03612 spermidine synthase; Provisional
Probab=89.55 E-value=11 Score=31.20 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++-.+..+..+|...-+..+... ++-|+..|-.-..+.+|.++|.++.|
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 344466777788887777765432 23455566666667777777766543
No 245
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=88.39 E-value=7.6 Score=33.08 Aligned_cols=120 Identities=8% Similarity=-0.001 Sum_probs=77.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh-hhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER-IIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK 90 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~ 90 (138)
.+|++..+...++..+....-+. ..+..++.| ++|+++.+.++..+..++..++.+..... +..........+.+-
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~-pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLT-PLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 47888888887777777766666 445566665 68999999999998888887765432211 000111233455666
Q ss_pred HHHHHHHHHHHHHHHhhcccchh---hhhhhhHHHHHHHHHhhHccC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQ---RGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~---~G~~~G~~~s~~sl~r~igP~ 134 (138)
..|.+..-|+..+...+-.++++ +-+...+.-...++|..+++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~ 142 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTI 142 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999998877543 334444444445555544443
No 246
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.37 E-value=0.038 Score=47.05 Aligned_cols=124 Identities=13% Similarity=0.054 Sum_probs=99.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh----------------
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG---------------- 76 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~---------------- 76 (138)
.-|++++++.|++.+.+-+...+... ...+...|..+-|++-++..+.+++.+++.+-+.+.+
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~-fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLII-FVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhH-hHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 46888999999988888888888844 5577778888888899999888888877766544320
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH
Q 043916 77 ------------------------------FSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS 126 (138)
Q Consensus 77 ------------------------------~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s 126 (138)
...|..+.+..+++++|....+|.-.+++-+-+.+++-....|+..++..
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 01466677888899999999999999999999999999999999988888
Q ss_pred HHhhHccCCcC
Q 043916 127 LTKTAGPAVRG 137 (138)
Q Consensus 127 l~r~igP~i~G 137 (138)
+|.++|=++|+
T Consensus 284 lGPaiGfllgS 294 (735)
T KOG3626|consen 284 LGPAIGFLLGS 294 (735)
T ss_pred hhhHHHHHHHH
Confidence 88887766554
No 247
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.35 E-value=4.9 Score=32.81 Aligned_cols=100 Identities=10% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916 26 LAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQ 105 (138)
Q Consensus 26 ~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li 105 (138)
.++.-....++ .++.|.+.++.++|....++...++...+.+-+.. .|. +++.-.+.++|.++.+..--..+
T Consensus 56 ~aiiY~~ftv~-~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N------~y~-~yfssallG~Gaallw~GqG~yl 127 (461)
T KOG3098|consen 56 QAIIYAFFTVS-CLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN------SYY-LYFSSALLGFGAALLWTGQGGYL 127 (461)
T ss_pred HHHHHHHHHHH-HHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc------hHH-HHHHHHHhhhhHHheecccceeh
Confidence 44444555555 44779999999999999988887766544332221 133 34556677888888888888889
Q ss_pred hhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916 106 NRAVEQHQRGAANGLVMTVVSLTKTAGP 133 (138)
Q Consensus 106 ~~~~p~~~~G~~~G~~~s~~sl~r~igP 133 (138)
++..++|...+-.++..+....+-.+|-
T Consensus 128 t~~st~~tie~Nisi~Wai~~~~li~Gg 155 (461)
T KOG3098|consen 128 TSNSTRETIERNISIFWAIGQSSLIIGG 155 (461)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988888777763
No 248
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=87.33 E-value=7 Score=32.14 Aligned_cols=114 Identities=9% Similarity=0.003 Sum_probs=63.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh----hhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII----GPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASV 88 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~----g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~ 88 (138)
+.|+|..+...+-....+..++. ..+...+.||. ..+..+.....+....- +.+....... ... ....
T Consensus 303 ~~~~s~~~a~~ls~~~~~~g~v~-~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~----~~~--~~~~ 375 (495)
T KOG2533|consen 303 NGGYSELQANLLSTPYDVGGIVG-LILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLP----GAY--GAFL 375 (495)
T ss_pred CCCcChHHhccccchHHhhhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch----HHh--HHHH
Confidence 57899999999999999988888 77889999995 33333333333322221 2222221110 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhHccC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
.-..+.....+....++|+.... .++-++..+..-..+.+..++|.
T Consensus 376 ~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 376 IGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred hcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 11223344556677777777654 45555555555555555555543
No 249
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=80.08 E-value=0.55 Score=38.83 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTSYTYIAMLS--------------- 75 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~p~~~~~~--------------- 75 (138)
..|+.++++...+.....+.....-.++.+.+.||+. .|+..+++.....+..+++...-.+.
T Consensus 334 ~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~ 413 (539)
T PF03137_consen 334 SQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHN 413 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcccc
Confidence 3599999999998888877666665667788888875 56666666665554444311100000
Q ss_pred ---------------------------hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHH
Q 043916 76 ---------------------------GF------SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVM 122 (138)
Q Consensus 76 ---------------------------~~------~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~ 122 (138)
|. ..+......+.+..+...........++-+.+|+|+|.-+.|+..
T Consensus 414 ~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~ 493 (539)
T PF03137_consen 414 STSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQW 493 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHH
Confidence 00 011111122223233334444445666779999999999999987
Q ss_pred HHHH-HHhhHccCCcCC
Q 043916 123 TVVS-LTKTAGPAVRGA 138 (138)
Q Consensus 123 s~~s-l~r~igP~i~G~ 138 (138)
.... +|.+=||++-|+
T Consensus 494 ~~~rllg~IPgPIifG~ 510 (539)
T PF03137_consen 494 LIIRLLGFIPGPIIFGA 510 (539)
T ss_dssp -----------------
T ss_pred HHHHhhcCcchHHHHhH
Confidence 6544 456667877663
No 250
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=79.62 E-value=2.3 Score=35.53 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSI 62 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~ 62 (138)
.-+-+|+++.+.|.+...-=+..++. -.+.+.+.||+..+|-+.++..+..
T Consensus 37 y~kQLGl~p~~~Gtl~g~~P~v~~L~-~P~~g~~Adr~r~~r~lllgsl~~~ 87 (618)
T KOG3762|consen 37 YFKQLGLNPAVVGTLTGTLPLVEFLA-APLWGFLADRYRKRRPLLLGSLLLS 87 (618)
T ss_pred HHHHcCCCHHHhhhhhhHHHHHHHHh-HHHHHHHHHHHHhcCchhHHHHHHH
Confidence 34679999999999999999999988 7789999999998887776665443
No 251
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=75.93 E-value=36 Score=26.62 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhhhH--HHHHHHHHHHHHHHHHHhhhhhhh--hH--HHHHHHHHHHHHHHHHHH
Q 043916 22 VGQVLAISGFNLLFSQLTLYPYVERIIGPI--IITRIAGVLSITLLTSYTYIAMLS--GF--SLALFINCASVMKNVLSV 95 (138)
Q Consensus 22 ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~~~p~~~~~~--~~--~~~~~l~~~~~~~~~~~~ 95 (138)
-|.+++.+-+..++.. -+..|+..|-.++ ....+.+++....+ +.|..+... +. .....+.+ .+.-...+
T Consensus 284 hGfiFatFMlASmLGS-Sla~Rl~s~s~~~ve~ymqivf~vs~a~l-~Lpilt~~vsP~kes~~~s~i~F--~~~E~cvG 359 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGS-SLASRLLSRSSPKVESYMQIVFLVSIAAL-LLPILTSSVSPSKESPSESLIGF--CLFEACVG 359 (454)
T ss_pred chhHHHHHHHHHHHhh-HHHHHHHhcCCcccchHHHHHHHHHHHHH-HHHHHHhccCCCcCCchHHHHHH--HHHHHHHh
Confidence 4788888888888773 3555555443322 23334444443333 333333311 11 11122222 23345667
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhH
Q 043916 96 SIITRLFLLQNRAVEQHQRGAANGL 120 (138)
Q Consensus 96 ~~~p~~~~li~~~~p~~~~G~~~G~ 120 (138)
..+|+++-+=++..|+|+|.+++-.
T Consensus 360 lfwPSimkmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 360 LFWPSIMKMRSQYIPEEARSTIMNF 384 (454)
T ss_pred hcchHHHHHHHhhCCHHHHhhhhhh
Confidence 8999999999999999999987654
No 252
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=70.57 E-value=56 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=24.8
Q ss_pred cchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 110 EQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 110 p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++++.+.|.......-..+.+||++.|
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG 170 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVG 170 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999998766
No 253
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=69.59 E-value=0.92 Score=37.18 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=55.8
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcccchhhhhhhh
Q 043916 43 YVERIIGPIIITRIAGVLSITLLTSYTYIAM-LSGFSLALFINCASVMKNVLSVSIITR--LFLLQNRAVEQHQRGAANG 119 (138)
Q Consensus 43 ~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~p~--~~~li~~~~p~~~~G~~~G 119 (138)
.+.|+.|++++...++.+..+.+..+....+ .... -..+ ....+......+ .|. +...-++..|.+.||+.+|
T Consensus 370 ~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~--~Gf~-v~y~l~~ff~NF-GPn~ttfivpaE~FParvR~t~hG 445 (538)
T KOG0252|consen 370 YFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENT--IGFV-VLYSLTFFFGNF-GPNATTFIVPAEIFPARVRSTCHG 445 (538)
T ss_pred EEeehhhhHHHHHhhHHHHHHHHHHHcCCccccccc--Ccee-ehHHHHHHHHhc-CCCceeEEeehhhchHHHhhhhhh
Confidence 6789999999999999999988876665433 1100 0001 111111222221 143 3444577789999999999
Q ss_pred HHHHHHHHHhhHcc
Q 043916 120 LVMTVVSLTKTAGP 133 (138)
Q Consensus 120 ~~~s~~sl~r~igP 133 (138)
++..+.-.|.++|-
T Consensus 446 IsAA~GK~GAivg~ 459 (538)
T KOG0252|consen 446 ISAASGKAGAIVGA 459 (538)
T ss_pred HHHHhccchHHHHH
Confidence 99888888777764
No 254
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=68.24 E-value=0.67 Score=36.07 Aligned_cols=115 Identities=7% Similarity=-0.065 Sum_probs=68.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITR-IAGVLSITLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
+.+.+.+..++-++.+.+....++. -++.+++.|| +|.|...+ ++..++ ++-+.+..-... ...|. +...+++
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVl-cffgGflidr~fgir~gtii~~~fv~-~GqliFa~Ggi~--~aFw~-M~~GRF~ 145 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVL-CFFGGFLIDRRFGIRLGTIILCIFVF-LGQLIFAAGGIS--HAFWT-MLAGRFL 145 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEE-eeecceeehhhhhhhHHHHHHHHHHH-HHHHHHHhchHH--HHHHH-HHhhhee
Confidence 4467777888888999999998887 5577887775 45443222 222211 111111111111 12354 3466777
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i 131 (138)
.++|+-..--+-+.+...+..-+|.+-+.|+..|+.-+|..+
T Consensus 146 FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 146 FGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred eccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 666654333344555556666789999999998887776543
No 255
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=67.79 E-value=38 Score=23.48 Aligned_cols=84 Identities=6% Similarity=-0.058 Sum_probs=45.9
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh
Q 043916 43 YVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-----GFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAA 117 (138)
Q Consensus 43 ~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~ 117 (138)
.+.+|+-+|-.+..+.- ..+++..++....+. +.-.|..++...++. +.+ .....+.++|.+=.+++-|..
T Consensus 56 ~Vs~RM~rRm~~~~GiP-~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~F--g~g-llGisYGilSaSWD~~r~GSl 131 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIP-TALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFF--GLG-LLGISYGILSASWDPEREGSL 131 (153)
T ss_pred HHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHhccccccCchHHHHHHHHHH--HHH-HHhhhhhhcccccCCCCCCCc
Confidence 44556644444444333 334444444332222 112355443333332 222 334578888888888999999
Q ss_pred hhHHHHHHHHHhh
Q 043916 118 NGLVMTVVSLTKT 130 (138)
Q Consensus 118 ~G~~~s~~sl~r~ 130 (138)
.|+-..-..++|.
T Consensus 132 lG~~e~~~N~~r~ 144 (153)
T PF11947_consen 132 LGWEEFKRNWGRM 144 (153)
T ss_pred ccHHHHHHhHHHH
Confidence 9998877777665
No 256
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=64.07 E-value=13 Score=25.86 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=38.5
Q ss_pred EEeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH
Q 043916 2 FSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60 (138)
Q Consensus 2 ~pl~~~~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~ 60 (138)
+|+.+.+.-..|+||+++...-+-.--+-+...+.-.++++++.+-+..|+-.+-.-+-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 2 MTLLLLATEAEGGFGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALK 60 (174)
T ss_pred chHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555567889998876554333444444444477888998888888877765553
No 257
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=62.25 E-value=0.64 Score=38.04 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH--HHHhhhhhhh------------h--HHHHH-
Q 043916 19 TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL--TSYTYIAMLS------------G--FSLAL- 81 (138)
Q Consensus 19 ~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~--~~~p~~~~~~------------~--~~~~~- 81 (138)
...-|..++..|+.....++....--..++.+|+...++.......+ ..+|+--... + ...|.
T Consensus 301 v~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~ 380 (488)
T KOG2325|consen 301 VLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCD 380 (488)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhc
Confidence 34468888899998888865444433355566666666633333322 2333211110 0 01111
Q ss_pred -----HHHHHHHHHHHHHHHHHH----HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916 82 -----FINCASVMKNVLSVSIIT----RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR 136 (138)
Q Consensus 82 -----~l~~~~~~~~~~~~~~~p----~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~ 136 (138)
..........+..+..+| ...++-++..-|.+||+++|..+...+.+|.+||.+.
T Consensus 381 ~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~ 444 (488)
T KOG2325|consen 381 TTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFS 444 (488)
T ss_pred cCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHH
Confidence 000111111222233334 5677888888899999999999999999999999764
No 258
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=58.24 E-value=43 Score=25.85 Aligned_cols=84 Identities=7% Similarity=-0.001 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh---hhhhhhHHHHHH
Q 043916 52 IITRIAGVLSITLLTSYTYIAMLSGF---SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQ---RGAANGLVMTVV 125 (138)
Q Consensus 52 ~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~---~G~~~G~~~s~~ 125 (138)
|.+.++..+..++.+++......... .....+...+.+..+|.+..-|....+..+-.++++ |-+..-..--..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 55667777778877776555432211 111234456667789999999999999999998753 333333444555
Q ss_pred HHHhhHccCC
Q 043916 126 SLTKTAGPAV 135 (138)
Q Consensus 126 sl~r~igP~i 135 (138)
.+|..+++.+
T Consensus 82 n~G~~~~~~~ 91 (372)
T PF00854_consen 82 NIGSLFSPTL 91 (372)
T ss_dssp HHHHHHHHHC
T ss_pred hhhhHhhccc
Confidence 5555555543
No 259
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=50.15 E-value=1.5e+02 Score=24.57 Aligned_cols=115 Identities=9% Similarity=0.046 Sum_probs=69.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh-----hhh--------------H-
Q 043916 18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM-----LSG--------------F- 77 (138)
Q Consensus 18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~-----~~~--------------~- 77 (138)
+++.|-.+=...=+...+.-..++.++.+++++.+++......+...+.++.+.-+ +.. .
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55566655444444344443668999999999999998877766666655554322 210 0
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916 78 ------SLALFINCASVMKNVLSVSIIT-RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP 133 (138)
Q Consensus 78 ------~~~~~l~~~~~~~~~~~~~~~p-~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP 133 (138)
.-|..- +..+..-+.+....+ .--.+.|+..+.||-.|..++......++-.++.
T Consensus 136 ~~i~~~~~Wt~s-lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG 197 (491)
T PF03219_consen 136 GFIAMFRNWTFS-LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSG 197 (491)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012211 112222233333333 3467889999999999999998877777766653
No 260
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=42.90 E-value=63 Score=26.35 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh
Q 043916 96 SIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT 130 (138)
Q Consensus 96 ~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ 130 (138)
+.-++++=+.-+.+|++||+.++|+.+++++.-..
T Consensus 402 ~fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldl 436 (503)
T KOG2601|consen 402 MFDLAVTQIMQETVPESERCVVFGVQNSLNSALDL 436 (503)
T ss_pred hccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHH
Confidence 34467788888999999999999999999886543
No 261
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=42.82 E-value=76 Score=22.02 Aligned_cols=45 Identities=9% Similarity=-0.060 Sum_probs=35.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV 59 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~ 59 (138)
+++++.++.|.+-.+.+...+..-++++++.+-+..|+-.+-.-.
T Consensus 12 l~~~~~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 12 LDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDI 56 (173)
T ss_pred cCCcHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666777888877777777777778899999999998887776554
No 262
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=40.17 E-value=79 Score=18.64 Aligned_cols=37 Identities=11% Similarity=-0.102 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRI 56 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~ 56 (138)
.|+-|.+...++.+.+..-.+.|++.+-+..|+-..-
T Consensus 11 sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~ 47 (67)
T MTH00169 11 TQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVN 47 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888888888888777788998888877765443
No 263
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=39.53 E-value=14 Score=28.82 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=51.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
-.|+...|||.++-..--..+++ ..+.+.+.|+-|+||.-+. +.+.|++.= ++..+. .+-++...+++-++.
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLF-GtivgSLaDkqGRKracvt----ycitYiLsC-iTKhSp--qYkVLmVGR~LGGia 137 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVT----YCITYILSC-ITKHSP--QYKVLMVGRVLGGIA 137 (454)
T ss_pred hcCccCCccceeeecccchHHHH-HHHHHHHHhhhccccceee----ehHHHHHHH-HhhcCC--ceEEEeehhhhhhHH
Confidence 36778889998776544455555 6688999999999985443 333333221 222111 133444566666777
Q ss_pred HHHHHHHHHHHH
Q 043916 94 SVSIITRLFLLQ 105 (138)
Q Consensus 94 ~~~~~p~~~~li 105 (138)
.+..+.+..++.
T Consensus 138 TsLLFSaFEsWl 149 (454)
T KOG4332|consen 138 TSLLFSAFESWL 149 (454)
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 264
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.64 E-value=98 Score=21.49 Aligned_cols=47 Identities=9% Similarity=-0.178 Sum_probs=36.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~ 60 (138)
=++.++.++-|..-.+.+...+..-++++++.+-+..|+-.+-...-
T Consensus 13 ~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~ 59 (175)
T PRK14472 13 LLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSID 59 (175)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888777777777777788999999999988877765553
No 265
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=37.36 E-value=92 Score=18.59 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHH
Q 043916 19 TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRI 56 (138)
Q Consensus 19 ~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~ 56 (138)
..|+-|.+....+...+.--.+.|++.+.+..|+...-
T Consensus 10 ~nQi~W~~i~f~il~~l~sk~iLP~i~~~~~~R~~i~k 47 (70)
T MTH00025 10 LTQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMK 47 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46888888888888877778888999888887775443
No 266
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=36.27 E-value=1.4e+02 Score=24.74 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=24.8
Q ss_pred HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
...-+..+-+||++|-++..+......+..-.+++
T Consensus 369 ~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 369 TNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP 403 (493)
T ss_pred cccceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence 34445566789999999999988777765554443
No 267
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.49 E-value=1.2e+02 Score=21.84 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH
Q 043916 19 TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV 59 (138)
Q Consensus 19 ~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~ 59 (138)
+.++-|..-.+++.+.+..-+++|++.+-+..|+-.+-.-+
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L 93 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDL 93 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888899999999998887776554
No 268
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.35 E-value=1.4e+02 Score=20.68 Aligned_cols=44 Identities=5% Similarity=-0.161 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV 59 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~ 59 (138)
|++...+.|.+--+.+...+..-++++++.+-+..|+-.+-.-.
T Consensus 15 ~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l 58 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDI 58 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666777777778888999988888887665444
No 269
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.31 E-value=1.5e+02 Score=20.13 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=31.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV 59 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~ 59 (138)
|.++++ ..+-+....+.+...+..-++++++.+-+..|+-.+-.-.
T Consensus 17 ~~~~~n-~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l 62 (156)
T CHL00118 17 GLFDFN-ATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNL 62 (156)
T ss_pred Cccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 4455656666677777778888998888888876665444
No 270
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=28.07 E-value=30 Score=20.02 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.5
Q ss_pred CCCChhHHHHHH
Q 043916 15 LSYSTKNVGQVL 26 (138)
Q Consensus 15 lg~s~~~ig~~~ 26 (138)
=|++++|||.++
T Consensus 43 kG~tpSqIG~iL 54 (60)
T PF08069_consen 43 KGLTPSQIGVIL 54 (60)
T ss_dssp TTHCHHHHHHHH
T ss_pred cCCCHHHhhhhh
Confidence 377899999875
No 271
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=26.40 E-value=3.4e+02 Score=21.73 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916 86 ASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA 134 (138)
Q Consensus 86 ~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~ 134 (138)
..+.-++.++.++-.+.-=+.+-.++|+|--+++......++|-.++-.
T Consensus 348 lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~ 396 (409)
T KOG3880|consen 348 LILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGL 396 (409)
T ss_pred HHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHH
Confidence 3445566667677666777777788999999999987777777665543
No 272
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.42 E-value=2.2e+02 Score=19.35 Aligned_cols=45 Identities=11% Similarity=-0.032 Sum_probs=30.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV 59 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~ 59 (138)
+++++..+-+-+--+-+...+..-++++++.+-+..|+-.+-.-.
T Consensus 4 ~~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l 48 (164)
T PRK14473 4 LGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESL 48 (164)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444555555666667888999999988887766554
No 273
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=24.90 E-value=86 Score=25.71 Aligned_cols=95 Identities=7% Similarity=-0.101 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSV 95 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 95 (138)
|.+..|..++-...-..+.+. ....+.+.|++|+|+.+......-... .+.+..+.+..| +.....+-..|-+
T Consensus 109 ~~s~~q~~llt~~v~~gmllg-a~~w~l~~d~~grr~~f~~T~l~t~v~----~~is~~spnf~~--L~~f~~l~~~g~g 181 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVG-AMVWGLSADTIGRRKGFNLTFLVTGVF----GVISGASPNFAS--LCVFRALWGFGVG 181 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhh-hhhhheehhhhhcchhhhhhHHHHHHH----HHhhcCCCCeeh--hhHHHHHHhccCC
Confidence 455555555555444444444 556678899999999887766544332 222222111111 1122223233333
Q ss_pred HHHHHHHHHHhhcccchhhhhhh
Q 043916 96 SIITRLFLLQNRAVEQHQRGAAN 118 (138)
Q Consensus 96 ~~~p~~~~li~~~~p~~~~G~~~ 118 (138)
. .|...++--+.-|..+|+.-.
T Consensus 182 g-~pv~~~~yle~lp~~~r~~~~ 203 (528)
T KOG0253|consen 182 G-LPVDSAIYLEFLPSSHRWLLT 203 (528)
T ss_pred C-ccHhHHHHHHhccCcCCCcch
Confidence 2 577777777777777776643
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.58 E-value=4e+02 Score=21.94 Aligned_cols=84 Identities=11% Similarity=-0.051 Sum_probs=48.2
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHH----hhhhhhhh-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 043916 44 VERIIGPIIITRIAGVLSITLLTSY----TYIAMLSG-----F---SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQ 111 (138)
Q Consensus 44 l~~~~g~~~~~~~~~~~~~~~~~~~----p~~~~~~~-----~---~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~ 111 (138)
=.|++|.+.....+..+....+++. |....+.+ . ...........+.+.++++.....+.++....|+
T Consensus 305 rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~ 384 (461)
T KOG3098|consen 305 RIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD 384 (461)
T ss_pred hhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 3466777777777666555544332 21110000 0 0111223455677889999999999999999953
Q ss_pred --hhhhhhhhHHHHHHHH
Q 043916 112 --HQRGAANGLVMTVVSL 127 (138)
Q Consensus 112 --~~~G~~~G~~~s~~sl 127 (138)
.+-.+..+..|+..+-
T Consensus 385 ~~~~~fsi~kfyq~~~s~ 402 (461)
T KOG3098|consen 385 DRAQAFSLFKFYQSVASC 402 (461)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 3344556666665553
No 275
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.93 E-value=2.1e+02 Score=20.03 Aligned_cols=40 Identities=8% Similarity=-0.049 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH
Q 043916 20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV 59 (138)
Q Consensus 20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~ 59 (138)
.++-|.+-.+.+.+.+..-+++|++.+-+..|+-.+-...
T Consensus 32 ~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l 71 (181)
T PRK13454 32 NQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDL 71 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4666666667777777777889999999998887775544
No 276
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.54 E-value=83 Score=27.49 Aligned_cols=54 Identities=11% Similarity=-0.048 Sum_probs=42.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTS 67 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~ 67 (138)
-+|.++++...+....++..+..-.++.+++.|||. .|+...+......+.++.
T Consensus 422 Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 422 QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999888888888899999865 566666666655555444
No 277
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=20.86 E-value=3.9e+02 Score=20.48 Aligned_cols=43 Identities=2% Similarity=-0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH
Q 043916 85 CASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL 127 (138)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl 127 (138)
....+..+++-+..|.......+.+|++..+.++|+++....+
T Consensus 329 ~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 329 PMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 4555667788888888888999999999999999999877653
No 278
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.82 E-value=2.4e+02 Score=18.03 Aligned_cols=23 Identities=4% Similarity=0.063 Sum_probs=13.5
Q ss_pred HhhhhhhHhhhhhHHHHHHHHHH
Q 043916 38 LTLYPYVERIIGPIIITRIAGVL 60 (138)
Q Consensus 38 ~~~~~~l~~~~g~~~~~~~~~~~ 60 (138)
.++-.||.++++....+.+.+++
T Consensus 60 ~~lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 60 VAVGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHH
Confidence 55666777777765544444333
Done!