Query 043916
Match_columns 138
No_of_seqs 129 out of 1040
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.5 8.7E-13 3E-17 101.2 12.7 119 12-137 53-174 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.4 1.3E-12 4.3E-17 100.5 10.4 119 11-137 54-176 (451)
3 4aps_A DI-OR tripeptide H+ sym 99.4 5.7E-12 2E-16 98.3 12.0 119 12-137 46-167 (491)
4 2gfp_A EMRD, multidrug resista 99.4 1E-12 3.6E-17 99.3 7.6 119 12-137 27-145 (375)
5 2xut_A Proton/peptide symporte 99.3 4.2E-11 1.4E-15 94.2 11.8 116 15-137 49-169 (524)
6 1pw4_A Glycerol-3-phosphate tr 99.1 6.2E-10 2.1E-14 85.4 9.8 120 13-137 281-404 (451)
7 4gc0_A D-xylose-proton symport 99.1 2.2E-09 7.5E-14 83.5 12.3 117 16-135 51-181 (491)
8 2cfq_A Lactose permease; trans 98.9 7.6E-09 2.6E-13 79.7 9.0 115 17-138 256-371 (417)
9 3o7q_A L-fucose-proton symport 98.7 5.9E-08 2E-12 74.2 9.6 114 14-137 289-402 (438)
10 2gfp_A EMRD, multidrug resista 98.7 1.1E-08 3.9E-13 77.0 3.7 116 14-137 229-347 (375)
11 4aps_A DI-OR tripeptide H+ sym 98.6 2.6E-08 8.9E-13 77.5 3.2 121 15-137 314-443 (491)
12 2cfq_A Lactose permease; trans 98.4 4.7E-09 1.6E-13 80.9 -5.5 119 13-137 36-159 (417)
13 4gc0_A D-xylose-proton symport 98.3 1.6E-05 5.5E-10 61.6 12.1 120 14-135 306-425 (491)
14 2xut_A Proton/peptide symporte 97.9 5.5E-06 1.9E-10 64.9 2.6 115 21-137 336-462 (524)
15 2g9p_A Antimicrobial peptide l 43.8 12 0.00042 16.6 1.3 14 40-53 2-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=8.7e-13 Score=101.23 Aligned_cols=119 Identities=7% Similarity=-0.103 Sum_probs=104.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSY---TYIAMLSGFSLALFINCASV 88 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~l~~~~~ 88 (138)
...+|+|..|+|++.+.+.+...+.+. +.+++.||+|+|+++..+..++.++.+++ ++.++. | .+...+.
T Consensus 53 ~~~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~ 125 (438)
T 3o7q_A 53 QQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNY-----T-LFLVGLF 125 (438)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHTTHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----H-HHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccH-----H-HHHHHHH
Confidence 356899999999999999999999965 78999999999999999999999998887 443332 2 3456778
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+.+++.+...|...+++++..|+|+|++++|+.++..++|..+||.+++
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998876
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=1.3e-12 Score=100.54 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=104.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHH
Q 043916 11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTY----IAMLSGFSLALFINCA 86 (138)
Q Consensus 11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~l~~~ 86 (138)
....+ .|..|+|++.+.+.+...+.+. +.+++.||+|+|+++..+..++.++.+++++ ..+. | .+...
T Consensus 54 ~~~~~-~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~ 125 (451)
T 1pw4_A 54 LVEQG-FSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI-----A-VMFVL 125 (451)
T ss_dssp TTSST-TCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS-----S-HHHHH
T ss_pred HHHHh-ccHhHHHHHHHHHHHHHHHHHH-hHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH-----H-HHHHH
Confidence 44567 8999999999999999999965 7799999999999999999999999988887 4432 2 33456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+++.+...|...+++++..|+|+||+++|+.+...++|..+||.++|
T Consensus 126 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 126 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999999999998764
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=5.7e-12 Score=98.33 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=103.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.+++|+|..++|++.+.+.+...+.+. +.+++.|| +|+|+++..+..+..++.+++++.++. + .+...+.+.
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~ 118 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGT-IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA-----S-ALFGSIILI 118 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST-----T-HHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH-----H-HHHHHHHHH
Confidence 356999999999999999999999965 78999999 899999999999999998888776543 1 334567788
Q ss_pred HHHHHHHHHHHHHHHhhcccchh--hhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQ--RGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~--~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+++.+...|...+++++..|+++ ||+..++.+....++..+||.++|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988 888899899999999999998765
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.37 E-value=1e-12 Score=99.27 Aligned_cols=119 Identities=17% Similarity=0.088 Sum_probs=104.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916 12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN 91 (138)
Q Consensus 12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 91 (138)
..++|.|+.|+|++.+...+...+.+. +.+++.||+|+|+.+..+.....+....+++.++. | .+...+.+.+
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~g 99 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQL-FYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL-----T-VLIAASAMQG 99 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHT-THHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHH
Confidence 456899999999999999999999955 78999999999999999999999988888766432 2 3445677888
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
++.+...|...+++++..|+|+|++.+|+.+...+++..+||.++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8999999999999999999999999999999999999999998765
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.27 E-value=4.2e-11 Score=94.22 Aligned_cols=116 Identities=8% Similarity=-0.040 Sum_probs=100.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-hhHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-GPIIITRIAGVLSITLLTSYTYIA-MLSGFSLALFINCASVMKNV 92 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~ 92 (138)
+++|+.++|++.+.+.+...+.+. +.+++.||+ |+|+++..+..++.+..+++++.. +. | .+...+.+.++
T Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~ 121 (524)
T 2xut_A 49 EELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV-----Q-GFYTGLFLIAL 121 (524)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH-----H-HHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH-----H-HHHHHHHHHHH
Confidence 349999999999999999999855 789999999 999999999999999888887765 32 2 23456677788
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhH---HHHHHHHHhhHccCCcC
Q 043916 93 LSVSIITRLFLLQNRAVEQHQRGAANGL---VMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~---~~s~~sl~r~igP~i~G 137 (138)
+.+...|...+++++.+|+++||+.++. .++...+|..+||.++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999887777 99999999999999886
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.08 E-value=6.2e-10 Score=85.42 Aligned_cols=120 Identities=11% Similarity=0.019 Sum_probs=93.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh--hhHHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII--GPIIITRIAGVLSI-TLLTSYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~--g~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
..+|+++.+.|+..+..++..++.. .+.+++.||+ |+|+.+..+..+.. +.++++.+..... .|. +.....+
T Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~ 355 (451)
T 1pw4_A 281 EVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN---PTV-DMICMIV 355 (451)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC---HHH-HHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC---HHH-HHHHHHH
Confidence 3489999999999999999999984 5779999999 99998888777666 5555554432111 122 2233344
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG 137 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G 137 (138)
.+.+.....+....++.+.+|+++||+++|+.++...+ +..++|.+.|
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677788889999999999999999999999999 9999998765
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=2.2e-09 Score=83.53 Aligned_cols=117 Identities=14% Similarity=0.047 Sum_probs=95.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh--------------hhhHHHHH
Q 043916 16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM--------------LSGFSLAL 81 (138)
Q Consensus 16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~--------------~~~~~~~~ 81 (138)
+.+..+.|++.+.+-+..++. .++.+++.||+|||+++.++..++.++.++..+... +... +.
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG-~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~--~~ 127 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIG-GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY--VP 127 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC--HH
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh--HH
Confidence 345667889988888888888 458899999999999999999999998887764221 0111 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 82 FINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 82 ~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.+...+++.+++.+...|...+++++.+|+++||+..++.+.....+..+++.+
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~ 181 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence 466889999999999999999999999999999999999999988888777654
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.88 E-value=7.6e-09 Score=79.73 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916 17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS 96 (138)
Q Consensus 17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (138)
.+..++|+..+..++..++. ..+.+++.||+|+|++...+.....+.+..+++.... +.. .....+...+...
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~ 328 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-----LEV-VILKTLHMFEVPF 328 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSH-----HHH-HHHTTHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccH-----HHH-HHHHHHHHHHHHH
Confidence 34667888888888887777 4578999999999999998888777776666543321 211 1222233444445
Q ss_pred HHHHHHHHHhhcccchhhhhhhhHH-HHHHHHHhhHccCCcCC
Q 043916 97 IITRLFLLQNRAVEQHQRGAANGLV-MTVVSLTKTAGPAVRGA 138 (138)
Q Consensus 97 ~~p~~~~li~~~~p~~~~G~~~G~~-~s~~sl~r~igP~i~G~ 138 (138)
..+....++++..|+|.||+..|+. ++...++..+||.++|+
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~ 371 (417)
T 2cfq_A 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371 (417)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Confidence 5566788999999999999999994 88889999999988763
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.74 E-value=5.9e-08 Score=74.18 Aligned_cols=114 Identities=8% Similarity=0.044 Sum_probs=90.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
.+|+++.+.|+..+..++...+.+ ++.+++.||+|+|+.+..+..+..+..+++.+.+.. +.. ....+...+
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~g~~ 360 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-----VGL--IALTLCSAF 360 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-----HHH--HHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-----HHH--HHHHHHHHH
Confidence 369999999999999999999884 588999999999999999998888877766654431 221 222455667
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.+..+|...++..+..|++ +++..++.. ...++..++|.+.|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence 7778899999989999866 899988877 67799999998765
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.67 E-value=1.1e-08 Score=76.97 Aligned_cols=116 Identities=8% Similarity=-0.017 Sum_probs=82.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH-HHHHHH--HHhhhhhhhhHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL-SITLLT--SYTYIAMLSGFSLALFINCASVMK 90 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~--~~p~~~~~~~~~~~~~l~~~~~~~ 90 (138)
.+|+|+.+.|+..+..++...+. ..+.+++.||++++. ..+... ...... ..+.. .....|. +.....+.
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~ 301 (375)
T 2gfp_A 229 VLGLSSMTVSILFILPIPAAFFG-AWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---GVMNVWT-LLVPAALF 301 (375)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH-HHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---HHHHHHH-HHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---ccccHHH-HHHHHHHH
Confidence 37889999999999999998888 458899999998732 222222 111111 11111 0111222 22344455
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
.++.+...|....++.+..| |+||+++|+.++...++..++|.+.|
T Consensus 302 g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 302 FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999998 89999999999999999999999886
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.56 E-value=2.6e-08 Score=77.53 Aligned_cols=121 Identities=5% Similarity=-0.047 Sum_probs=87.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHH-----HHHHHHHHHHHHHhhhhhhh----hHHHHHHHHH
Q 043916 15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITR-----IAGVLSITLLTSYTYIAMLS----GFSLALFINC 85 (138)
Q Consensus 15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~-----~~~~~~~~~~~~~p~~~~~~----~~~~~~~l~~ 85 (138)
++.+..+.++.....++...+. ..+.+++.||+++|+... .+..+..+++.++....... +...+ .+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 391 (491)
T 4aps_A 314 VDSSWFPVSWFQSLNPLFIMLY-TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL-WLVG 391 (491)
T ss_dssp CCCSSSCSGGGTTHHHHHHHHH-HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH-HHHH
T ss_pred hccCccCHHHHhccchHHHHHH-HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH-HHHH
Confidence 4555567788888888888888 447788999999876555 66666666665555432110 00112 2224
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 86 ASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 86 ~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+..++.+...|....++.+.+|+++||+++|+.+....++..++|.+.|
T Consensus 392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT 443 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778778889999999999999999999999999999999998765
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.37 E-value=4.7e-09 Score=80.90 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=73.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHH
Q 043916 13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLT---SYTYIAMLSGFSLALFINCASVM 89 (138)
Q Consensus 13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~l~~~~~~ 89 (138)
..+|+|+.|+|++.+...+...+.|. +.+++.||+|+|+++..+...+.+... ...+..... +. ......+
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~ 109 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQP-LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ----YN-ILVGSIV 109 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHH-HHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH----TT-CCHHHHG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHH
Confidence 34899999999999999999999966 779999999999999988876644211 111111100 00 0001111
Q ss_pred HHHHHHHHHHHHHHHHhhcccc--hhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 90 KNVLSVSIITRLFLLQNRAVEQ--HQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 90 ~~~~~~~~~p~~~~li~~~~p~--~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
...+.+..++.....+....++ +++|...|..+...+++.+++|.++|
T Consensus 110 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~ 159 (417)
T 2cfq_A 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159 (417)
T ss_dssp GGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 1112222333333334444433 46677788887778888888887764
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.25 E-value=1.6e-05 Score=61.58 Aligned_cols=120 Identities=13% Similarity=-0.057 Sum_probs=81.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916 14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL 93 (138)
Q Consensus 14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 93 (138)
..+.+..+........++...+. ..+..++.||+|+|+....+.....+....+......... .+..+..........
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 383 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTF-TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIVALLSMLFYVAAF 383 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred hcCCCccchhhHHHHHHHHHHHH-HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHH
Confidence 35667777777777777777776 5577899999999999998888777766555433221111 121111111111222
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916 94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV 135 (138)
Q Consensus 94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i 135 (138)
.....|....+.++..|.+.|++.+|+......++..++|.+
T Consensus 384 ~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~ 425 (491)
T 4gc0_A 384 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT 425 (491)
T ss_dssp HTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222336677889999999999999999999999998887754
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.87 E-value=5.5e-06 Score=64.93 Aligned_cols=115 Identities=7% Similarity=-0.014 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH----hhhh----hHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHHH
Q 043916 21 NVGQVLAISGFNLLFSQLTLYPYVE----RIIG----PIIITRIAGVLSITLLTSYTYIAMLS----GFSLALFINCASV 88 (138)
Q Consensus 21 ~ig~~~~~~g~~~~~~q~~~~~~l~----~~~g----~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~l~~~~~ 88 (138)
+.+++.....+...+.+ .+..++. +|.+ +++....+..+..+.++.+++..... ....|. +.....
T Consensus 336 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 413 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFW-QILPYA 413 (524)
T ss_dssp CHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHH-HHHHHH
Confidence 34555555555555553 3334432 3333 34566677777777776665532100 001122 223456
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916 89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG 137 (138)
Q Consensus 89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G 137 (138)
+..++.+...|...+++++.+|+++||+++|+.++...++..+||.+.|
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g 462 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV 462 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888889999999999999999999999999999999999998764
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=43.80 E-value=12 Score=16.57 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=10.6
Q ss_pred hhhhhHhhhhhHHH
Q 043916 40 LYPYVERIIGPIII 53 (138)
Q Consensus 40 ~~~~l~~~~g~~~~ 53 (138)
+++.+.++||++.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788899988753
Done!