Your job contains 1 sequence.
>043917
VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS
WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL
ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQ
HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPN
FQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEK
RHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQDF
GEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAMENRDL
VET
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043917
(423 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 1115 5.2e-113 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 689 1.4e-75 3
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 689 1.4e-75 3
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 683 3.0e-75 3
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 683 3.0e-75 3
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 684 6.0e-72 2
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 681 2.0e-71 2
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 681 2.0e-71 2
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 682 3.3e-71 2
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 675 8.6e-71 2
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 672 4.7e-70 2
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 672 4.7e-70 2
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 677 1.1e-68 2
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 692 3.5e-68 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 622 9.0e-61 1
GENEDB_PFALCIPARUM|PFC0825c - symbol:PFC0825c "cleavage a... 543 1.8e-51 1
UNIPROTKB|O77371 - symbol:PFC0825c "Cleavage and polyaden... 543 1.8e-51 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 374 2.7e-36 2
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 395 5.3e-36 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 379 2.0e-34 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 379 2.6e-34 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 379 2.6e-34 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 379 2.6e-34 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 379 2.6e-34 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 379 2.6e-34 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 379 2.6e-34 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 379 2.6e-34 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 379 3.1e-34 1
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 370 2.5e-33 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 359 5.8e-32 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 357 8.9e-32 1
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 346 1.1e-30 1
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 339 1.1e-29 1
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 339 1.1e-29 1
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 333 3.7e-29 1
UNIPROTKB|C9J979 - symbol:CPSF3L "Integrator complex subu... 308 1.7e-27 1
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 137 5.0e-23 3
GENEDB_PFALCIPARUM|PF14_0364 - symbol:PF14_0364 "cleavage... 283 6.5e-23 2
UNIPROTKB|Q8IL83 - symbol:PF14_0364 "Cleavage and polyade... 283 6.5e-23 2
TIGR_CMR|CHY_2049 - symbol:CHY_2049 "metallo-beta-lactama... 218 4.2e-15 1
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 181 6.1e-14 2
UNIPROTKB|Q9KV92 - symbol:VC_0264 "Putative uncharacteriz... 204 1.3e-13 1
TIGR_CMR|VC_0264 - symbol:VC_0264 "conserved hypothetical... 204 1.3e-13 1
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 148 3.1e-12 2
TIGR_CMR|DET_1061 - symbol:DET_1061 "metallo-beta-lactama... 189 6.7e-12 1
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 145 2.1e-11 2
TIGR_CMR|CPS_2623 - symbol:CPS_2623 "metallo-beta-lactama... 181 4.9e-11 1
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 142 5.8e-11 2
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 141 5.8e-11 2
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 141 7.4e-11 2
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 142 1.0e-10 3
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 136 4.3e-10 2
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 134 4.4e-10 2
UNIPROTKB|Q74C32 - symbol:GSU1843 "RNA exonuclease, beta-... 137 2.4e-08 2
TIGR_CMR|GSU_1843 - symbol:GSU_1843 "metallo-beta-lactama... 137 2.4e-08 2
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 143 4.6e-08 2
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 113 1.2e-06 2
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 139 1.8e-06 1
UNIPROTKB|Q8EJC6 - symbol:SO_0541 "RNA-metabolizing metal... 137 4.4e-06 1
TIGR_CMR|SO_0541 - symbol:SO_0541 "metallo-beta-lactamase... 137 4.4e-06 1
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 138 6.6e-06 1
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 96 0.00063 2
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 96 0.00063 2
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 212/319 (66%), Positives = 253/319 (79%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVAGGGK LIP+FALGRAQELC+LLDDYWERMN++VPIYFS+GLTIQANMYYKMLIS
Sbjct: 224 VHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLIS 283
Query: 61 WTSQKVKE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQ VKE T+N FDFKNV +FDRSLI APGPCVLFATPGML GFSLEVFKHWAPS
Sbjct: 284 WTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSP 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NL+ LPGY +AGT+G+KLM+G PT ++L GTK+DVRC++HQ+AFSPHTD KGIMDL K
Sbjct: 344 LNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP++V+LVHGEKP M LKE+I SEL I C+ PAN E++ ST Y+KA ASD F++S
Sbjct: 404 FLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKS 463
Query: 236 CMNPNFQYLXXXXXXXXXXXXXCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C NPNF++ + L + D R A+G+LV+EKS+KAK+VHQDE+
Sbjct: 464 CSNPNFKF----------------SNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISE 507
Query: 296 MLGEKRHEVQFAYCCPVNV 314
+L EK H V A+CCPV V
Sbjct: 508 VLHEKNHVVSLAHCCPVKV 526
Score = 245 (91.3 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 60/152 (39%), Positives = 86/152 (56%)
Query: 265 LWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFTTTS 324
L + D R A+G+LV+EKS+KAK+VHQDE+ +L EK H V A+CCPV V E
Sbjct: 477 LRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKG-ES----- 530
Query: 325 LTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQDFGEHLQVESFHLSVCLKDTCPYRIT 384
+ + LI+ L AK+ + +S I + LQV SF S+CLKD C +R +
Sbjct: 531 ---------EDDDVDLIKQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSS 581
Query: 385 NGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ + F CC WS AD +L +II+A++
Sbjct: 582 SSSSE---AVFLCCNWSIADLELGWEIINAIK 610
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 689 (247.6 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 124/233 (53%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 231 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 290
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 291 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 351 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S
Sbjct: 411 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGIS 463
Score = 66 (28.3 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 473 QGLLPE-AKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CRVHLHDTRK 528
Query: 320 FTTTSL 325
T+L
Sbjct: 529 EQETAL 534
Score = 38 (18.4 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 364 LQVESFHLSVCLKDTCPYRITNG 386
L+V S HL LKD C + +G
Sbjct: 534 LRVYS-HLKSVLKDHCVQHLPDG 555
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 689 (247.6 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 124/233 (53%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGIS 457
Score = 66 (28.3 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 467 QGLLPE-AKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CRVHLHDTRK 522
Query: 320 FTTTSL 325
T+L
Sbjct: 523 EQETAL 528
Score = 38 (18.4 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 364 LQVESFHLSVCLKDTCPYRITNG 386
L+V S HL LKD C + +G
Sbjct: 528 LRVYS-HLKSVLKDHCVQHLPDG 549
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 683 (245.5 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 122/233 (52%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGIS 457
Score = 67 (28.6 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 467 QGLLPE-AKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CRVHLQDTRK 522
Query: 320 FTTTSL 325
T+L
Sbjct: 523 EQETAL 528
Score = 40 (19.1 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 364 LQVESFHLSVCLKDTCPYRITNG---LE----------DKPRTAFFCCTWSAADDKLARK 410
L+V S HL LKD C + +G +E + P T +W+ D++L
Sbjct: 528 LRVYS-HLKSTLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQDEELGSF 586
Query: 411 IISAMEN 417
+ + ++N
Sbjct: 587 LTTLLKN 593
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 683 (245.5 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 122/233 (52%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGIS 457
Score = 67 (28.6 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 467 QGLLPE-AKKPRLLHGTLIM-KDNNFRLVSSEQALKELGLAEHQLRFT--CRVHLQDTRK 522
Query: 320 FTTTSL 325
T+L
Sbjct: 523 EQETAL 528
Score = 40 (19.1 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 364 LQVESFHLSVCLKDTCPYRITNG---LE----------DKPRTAFFCCTWSAADDKLARK 410
L+V S HL LKD C + +G +E + P T +W+ D++L
Sbjct: 528 LRVYS-HLKSTLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQDEELGSF 586
Query: 411 IISAMEN 417
+ + ++N
Sbjct: 587 LTALLKN 593
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 684 (245.8 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 122/233 (52%), Positives = 172/233 (73%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGIS 457
Score = 62 (26.9 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP +K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 467 QGLLPD-VKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CRVHLHDPRK 522
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 681 (244.8 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 121/233 (51%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 224 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 284 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 344 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 403
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S
Sbjct: 404 AEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGIS 456
Score = 60 (26.2 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 466 QGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CRVHLHDTRK 521
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 681 (244.8 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 121/233 (51%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGIS 457
Score = 60 (26.2 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 467 QGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CRVHLHDTRK 522
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 682 (245.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 122/233 (52%), Positives = 173/233 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +ELEG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLELEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGAS 229
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRLSCYMPANGETVTLPTSPSIPVGIS 457
Score = 57 (25.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 260 EGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEK 319
+G LP K R+ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 467 QGLLPD-AKKARLLHGTLIM-KDSTFRLVSSEQALKELGLAEHQLRFT--CRVHLHDPRK 522
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 675 (242.7 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 120/222 (54%), Positives = 166/222 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 228 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 287
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS D PGP V+FATPGML G SL++FK WA +E
Sbjct: 288 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 347
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K+++G +E+EG +DV+ Q+ ++FS H D KGIM L++
Sbjct: 348 KNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRM 407
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P++++LVHGE KM LK++I+ E I C+ PAN E+ I
Sbjct: 408 AEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTI 449
Score = 60 (26.2 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 261 GTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNV------ 314
G LP K R G L++ K ++V ++ L LG H+++F C V +
Sbjct: 472 GPLPD-AKKPRTMHGTLIM-KDNSLRLVSPEQALKELGLNEHQLRFT--CRVQLHDPHSD 527
Query: 315 -DELEKFTT--TSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQ 358
D L + T S+ + + P+ + ++ +V K++ E N++
Sbjct: 528 TDTLSRIYTHLKSVLKSYSIQHVPDGTVIVESIVIKVTSSAEEPNLK 574
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 672 (241.6 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 120/222 (54%), Positives = 167/222 (75%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P++V+LVHGE KM LK++I+ E + CY PAN E+ I
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTSI 446
Score = 56 (24.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 261 GTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKF 320
G LP K ++ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 468 GLLPD-AKKPKLMHGTLIM-KDNSFRLVSPEQALKELGLAEHQLRFT--CRVHIQDPRKE 523
Query: 321 TTTSL 325
T L
Sbjct: 524 HETVL 528
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 672 (241.6 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 120/222 (54%), Positives = 167/222 (75%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P++V+LVHGE KM LK++I+ E + CY PAN E+ I
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTI 446
Score = 56 (24.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 261 GTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKF 320
G LP K ++ G L++ K ++V ++ L LG H+++F C V++ + K
Sbjct: 468 GLLPD-AKKPKLMHGTLIM-KDNSFRLVSPEQALKELGLAEHQLRFT--CRVHIQDPRKE 523
Query: 321 TTTSL 325
T L
Sbjct: 524 HETVL 528
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 677 (243.4 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 122/225 (54%), Positives = 168/225 (74%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E ++ +V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ C+ ST
Sbjct: 405 CEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGET-CVIST 448
Score = 38 (18.4 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 388 EDKPRTAFFCCTWSAADDKLARKIISAMEN 417
E P+ +W+ D+ + I++ ++N
Sbjct: 566 EKDPKQKNILISWTNQDEDIGAYILNVLQN 595
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 134/260 (51%), Positives = 184/260 (70%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+H+CV GGKVLIP FALGR QELCIL+D YWE+MNL +PIYFSAGL +AN+YYK+ I
Sbjct: 224 IHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFI 283
Query: 60 SWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+WT+QK+K+T+ N FDFK++ F L+DAPG VLFATPGML G SLEVFK WAP+
Sbjct: 284 NWTNQKIKQTFVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWAPN 343
Query: 117 EMNLITLPGYCLAGTIGNKLMS-GN-------PT---IELEG-TKIDVRCQIHQLAFSPH 164
E+N+ +PGYC+ GT+GNKL++ G+ P +E++ T I+V+C+IH L+FS H
Sbjct: 344 ELNMTIIPGYCVVGTVGNKLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFSAH 403
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYV 224
D KGI+ L+K +P++VILVHGEK KM L ++I E+G+ CY PAN ++ I + +
Sbjct: 404 ADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKSI 463
Query: 225 KAGAS-DAFIRSCMNPNFQY 243
S + R ++ ++QY
Sbjct: 464 PIDISLNLLKRQILDYSYQY 483
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 112/221 (50%), Positives = 156/221 (70%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKV+IP FALGRAQELCILL+ YWERM L VPIYFS GL +AN YY++ IS
Sbjct: 230 VHECVMKGGKVIIPVFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFIS 289
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++ +K+T+ N F+FK++ ++ D PGP VLF+TPGML GG SL+VFK W
Sbjct: 290 WTNENIKKTFVERNMFEFKHIKPMEKGCEDQPGPQVLFSTPGMLHGGQSLKVFKKWCSDP 349
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
+N+I +PGYC+AGT+G ++++G IE++ ++R + ++FS H D KGIM L++
Sbjct: 350 LNMIIMPGYCVAGTVGARVINGEKKIEIDQKMHEIRLGVEYMSFSAHADAKGIMQLIRQC 409
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
PQHV+ VHGE KM LK +++ E + + PAN E++ I
Sbjct: 410 EPQHVMFVHGEASKMEFLKGKVEKEYKVPVHMPANGETVVI 450
>GENEDB_PFALCIPARUM|PFC0825c [details] [associations]
symbol:PFC0825c "cleavage and polyadenylation
specificity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 GO:GO:0003729 GO:GO:0016787
EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 543 (196.2 bits), Expect = 1.8e-51, P = 1.8e-51
Identities = 110/214 (51%), Positives = 138/214 (64%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FA+GRAQEL ILLDDYW++M + PIYF GLT AN YYK+ S
Sbjct: 361 VHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKIHYPIYFGCGLTENANKYYKIYSS 420
Query: 61 WTSQKV--KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W + E N FDF N+ F + ++ P VLFATPGML G SL+ FK WA +
Sbjct: 421 WINSSCMSNEKENLFDFANISPFLNNYLNEKRPMVLFATPGMLHTGLSLKAFKAWAGNPQ 480
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GT+G+KL+ G I L+GT I V C+I L+FS H D GI L+K +
Sbjct: 481 NLIVLPGYCVQGTVGHKLIMGEKQISLDGTTYIKVLCKIIYLSFSAHADSNGIQQLIKHV 540
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
SP++VI VHGEK M L + I ++ I P+
Sbjct: 541 SPKNVIFVHGEKNGMQKLAKYISNKHMINSMCPS 574
>UNIPROTKB|O77371 [details] [associations]
symbol:PFC0825c "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
InterPro:IPR001279 SMART:SM00849 Pfam:PF07521 GO:GO:0003729
GO:GO:0016787 EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 543 (196.2 bits), Expect = 1.8e-51, P = 1.8e-51
Identities = 110/214 (51%), Positives = 138/214 (64%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FA+GRAQEL ILLDDYW++M + PIYF GLT AN YYK+ S
Sbjct: 361 VHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKIHYPIYFGCGLTENANKYYKIYSS 420
Query: 61 WTSQKV--KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W + E N FDF N+ F + ++ P VLFATPGML G SL+ FK WA +
Sbjct: 421 WINSSCMSNEKENLFDFANISPFLNNYLNEKRPMVLFATPGMLHTGLSLKAFKAWAGNPQ 480
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GT+G+KL+ G I L+GT I V C+I L+FS H D GI L+K +
Sbjct: 481 NLIVLPGYCVQGTVGHKLIMGEKQISLDGTTYIKVLCKIIYLSFSAHADSNGIQQLIKHV 540
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
SP++VI VHGEK M L + I ++ I P+
Sbjct: 541 SPKNVIFVHGEKNGMQKLAKYISNKHMINSMCPS 574
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 374 (136.7 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 81/232 (34%), Positives = 134/232 (57%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 463
Score = 47 (21.6 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 24/79 (30%), Positives = 32/79 (40%)
Query: 279 LEKSEKAKV---VHQDELLLML----GEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARM 331
L+ EK KV V Q+ LL M GE+ + + C VNVDE F
Sbjct: 604 LQPQEK-KVDVNVFQNRLLKMFQDMFGEECVDFKDKNCLAVNVDEKTAFIDLETRTVEYE 662
Query: 332 LRDPNKSSLIRLLVAKLSR 350
+P SL +L + R
Sbjct: 663 EPNPEDDSLREMLELAVQR 681
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 395 (144.1 bits), Expect = 5.3e-36, P = 5.3e-36
Identities = 84/229 (36%), Positives = 132/229 (57%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFA+G AQEL ++LD+YWE L +P+Y+++ L + Y+
Sbjct: 227 VHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTF 286
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + ++++ N F FK+V R + + GPCV+ ATPGML GFS E+F+ W
Sbjct: 287 VNGMNSRIQKQIAVKNPFIFKHVSTL-RGMDQFEDAGPCVVLATPGMLQSGFSRELFESW 345
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
P N + GYC+ GT+ ++S + L G K+ +R Q+ ++FS HTD +
Sbjct: 346 CPDTKNGCIIAGYCVEGTLAKHILSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSN 405
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSE-----LGIKCYDPANNESM 216
VK L P H++LVHGE +M+ LK I+ + + I+ ++P N E +
Sbjct: 406 FVKALKPPHLVLVHGELHEMSRLKSGIERQFQDDNIPIEVHNPRNTERL 454
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 379 (138.5 bits), Expect = 2.0e-34, P = 2.0e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 189 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 248
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 249 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 307
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 308 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 367
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 368 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 419
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 379 (138.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 229 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 288
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 289 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 347
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 348 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 407
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 408 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 459
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 379 (138.5 bits), Expect = 3.1e-34, P = 3.1e-34
Identities = 82/232 (35%), Positives = 135/232 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ L +PIY+++ L + Y+
Sbjct: 259 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 318
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 319 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 377
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 378 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 437
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 438 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 489
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 370 (135.3 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 79/229 (34%), Positives = 129/229 (56%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 359 (131.4 bits), Expect = 5.8e-32, P = 5.8e-32
Identities = 77/226 (34%), Positives = 125/226 (55%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
VH+ V GK LIP FALGRAQEL ++LD+YW L VPIY+++ L + Y+
Sbjct: 253 VHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTY 312
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +V+ + N F+FK++ N D GPCV A+PGML G S ++F+ W
Sbjct: 313 INMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWC 372
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N I +PGY + GT+ +MS I L+ + + + ++FS H+D +
Sbjct: 373 SDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEF 432
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG-IKCYDPANNESMCI 218
++ + P HV+LVHG+ +M+ L++ + ++ I P N S+ +
Sbjct: 433 IQEIQPPHVVLVHGDANEMSRLRQSLVAKFKTINVLTPKNAMSVAL 478
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 357 (130.7 bits), Expect = 8.9e-32, P = 8.9e-32
Identities = 80/233 (34%), Positives = 130/233 (55%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLR-VPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALGRAQEL ++LD+YW ++LR VPIY+++ L + ++
Sbjct: 233 IHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + +++ + N F F+ V + R+L D GP V+ A+PGML G S + + W
Sbjct: 293 VNMMNDNIRKIFAERNPFIFRFVKSL-RNLEKFDDIGPSVILASPGMLQNGVSRTLLERW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
AP N + L GY + GT+ K ++ P + L G KI R + +L+F+ H D
Sbjct: 352 APDPRNTLLLTGYSVEGTMA-KQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNS 410
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSE-----LGIKCYDPANNESMCIP 219
+ + ++ H+ILVHGE+ M LK + S+ + +K Y P N C+P
Sbjct: 411 EFIDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRN----CVP 459
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 346 (126.9 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 80/227 (35%), Positives = 125/227 (55%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H VA GG+VLIPAFALGRAQEL ++LD+YW +L +PIY+++ L + Y+
Sbjct: 236 IHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTY 295
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLEVFKHW 113
I + +++ + N F FK++ + S+ D GP V+ ATPG L G S ++F W
Sbjct: 296 ILSMNDRIRNQFANSNPFVFKHISPLN-SIDDFNDVGPSVVMATPGGLQSGLSRQLFDSW 354
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 355 CSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTST 414
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ +E K P N ES+
Sbjct: 415 FLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESV 461
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 81/239 (33%), Positives = 129/239 (53%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALG AQEL ++LD+YW + +L+ V +++++ L + Y+
Sbjct: 324 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 383
Query: 59 ISWTSQKVK------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ K++ E N FDFK + + D S GP V+ ATPGML G S ++ +
Sbjct: 384 TGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLE 443
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPHTDG 167
WAP NL+ L GY + GT+ +L+ PT+ T D+ R I +++F+ H D
Sbjct: 444 KWAPDGKNLVILTGYSVEGTMAKELLK-EPTMIQSATNPDMTIPRRIGIEEISFAAHVDF 502
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCI 218
+ + ++ +SP VILVHG+ M LK + S+ +K Y+P N E + I
Sbjct: 503 QQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELII 561
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 81/239 (33%), Positives = 129/239 (53%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALG AQEL ++LD+YW + +L+ V +++++ L + Y+
Sbjct: 324 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 383
Query: 59 ISWTSQKVK------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ K++ E N FDFK + + D S GP V+ ATPGML G S ++ +
Sbjct: 384 TGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLE 443
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPHTDG 167
WAP NL+ L GY + GT+ +L+ PT+ T D+ R I +++F+ H D
Sbjct: 444 KWAPDGKNLVILTGYSVEGTMAKELLK-EPTMIQSATNPDMTIPRRIGIEEISFAAHVDF 502
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCI 218
+ + ++ +SP VILVHG+ M LK + S+ +K Y+P N E + I
Sbjct: 503 QQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELII 561
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 333 (122.3 bits), Expect = 3.7e-29, P = 3.7e-29
Identities = 71/216 (32%), Positives = 126/216 (58%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM--NL---RVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW + L +VPI++++ L + +
Sbjct: 231 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 290
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 291 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDV--RCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M TI + +I + RCQ+ +++F+ H
Sbjct: 350 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 409
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS 201
D + ++ ++ +S ++ILVHGE M LK + S
Sbjct: 410 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLS 445
>UNIPROTKB|C9J979 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 InterPro:IPR022712 Pfam:PF10996 HOGENOM:HOG000231294
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00514808
ProteinModelPortal:C9J979 SMR:C9J979 STRING:C9J979
Ensembl:ENST00000434694 ArrayExpress:C9J979 Bgee:C9J979
Uniprot:C9J979
Length = 344
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 57/90 (63%), Positives = 72/90 (80%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 255 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 314
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLID 87
WT+QK+++T+ N F+FK++ FDR+ D
Sbjct: 315 WTNQKIRKTFVQRNMFEFKHIKAFDRAFAD 344
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 137 (53.3 bits), Expect = 5.0e-23, Sum P(3) = 5.0e-23
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 73 FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAG 130
+DFK V + RSL D G CV+ A+PGML G S E+ + WAP+E N + + GY + G
Sbjct: 334 WDFKYVRSL-RSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERNGVVMTGYSVEG 392
Query: 131 TIGNKLMS 138
T+ +L++
Sbjct: 393 TMAKQLLN 400
Score = 129 (50.5 bits), Expect = 5.0e-23, Sum P(3) = 5.0e-23
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 132 IGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPK 191
+G M+GN E + I RC + +++F+ H DG + ++ +S VILVHGEK +
Sbjct: 416 MGRTRMNGND--EEQKIMIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQ 473
Query: 192 MATLKERIQS-----ELGIKCYDPANNESMCIP 219
M LK ++ S + +K Y PAN E + IP
Sbjct: 474 MMRLKSKLLSLNAEKTVKVKVYTPANCEEVRIP 506
Score = 127 (49.8 bits), Expect = 5.0e-23, Sum P(3) = 5.0e-23
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE-RMNL-RVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++L++YWE L ++PIY+ + + Y+ I +
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 309
Query: 66 VKETY 70
+K +
Sbjct: 310 IKRLF 314
>GENEDB_PFALCIPARUM|PF14_0364 [details] [associations]
symbol:PF14_0364 "cleavage and polyadenylation
specifity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014187 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 RefSeq:XP_001348538.1 ProteinModelPortal:Q8IL83
PRIDE:Q8IL83 EnsemblProtists:PF14_0364:mRNA GeneID:811946
KEGG:pfa:PF14_0364 EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH
ProtClustDB:CLSZ2457730 Uniprot:Q8IL83
Length = 876
Score = 283 (104.7 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 64/206 (31%), Positives = 114/206 (55%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER-MNLR-VPIYFSAGLTIQANMYYKMLISWTSQKV 66
GKVL+P FALGRAQEL ++L+++W++ +L+ +PI++ + + ++ Y+ I+ + V
Sbjct: 279 GKVLLPVFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYETFINLCGEFV 338
Query: 67 K----ETYNAFDFKNV------HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
K E N F+FK V + L PCV+ A+PGML G S +F A
Sbjct: 339 KKVVNEGKNPFNFKYVKYAKSLESISSYLYQDNNPCVIMASPGMLQNGISKNIFNIIASD 398
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
+ + + L GY + GT+ ++L + + + + +C+ Q++FS H+D ++
Sbjct: 399 KKSGVILTGYTVKGTLADELKTEPEFVTINDKVVKRKCRFEQISFSAHSDFNQTKTFIEK 458
Query: 177 LSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG+K ++ LK ++ E
Sbjct: 459 LKCPNVVLVHGDKNELNRLKNKLIEE 484
Score = 45 (20.9 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 186 HGEKPKMATLKERIQSEL-GIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQY 243
H ++ K + +++ GI +P N + P+ Y A I +N +F Y
Sbjct: 577 HNINNNISNEKHNVNNQIEGIIITEPQNVPILIYPNDIYEYTNLKTAMIDQTINISFPY 635
>UNIPROTKB|Q8IL83 [details] [associations]
symbol:PF14_0364 "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014187
GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 RefSeq:XP_001348538.1
ProteinModelPortal:Q8IL83 PRIDE:Q8IL83
EnsemblProtists:PF14_0364:mRNA GeneID:811946 KEGG:pfa:PF14_0364
EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH ProtClustDB:CLSZ2457730
Uniprot:Q8IL83
Length = 876
Score = 283 (104.7 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 64/206 (31%), Positives = 114/206 (55%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER-MNLR-VPIYFSAGLTIQANMYYKMLISWTSQKV 66
GKVL+P FALGRAQEL ++L+++W++ +L+ +PI++ + + ++ Y+ I+ + V
Sbjct: 279 GKVLLPVFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYETFINLCGEFV 338
Query: 67 K----ETYNAFDFKNV------HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
K E N F+FK V + L PCV+ A+PGML G S +F A
Sbjct: 339 KKVVNEGKNPFNFKYVKYAKSLESISSYLYQDNNPCVIMASPGMLQNGISKNIFNIIASD 398
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
+ + + L GY + GT+ ++L + + + + +C+ Q++FS H+D ++
Sbjct: 399 KKSGVILTGYTVKGTLADELKTEPEFVTINDKVVKRKCRFEQISFSAHSDFNQTKTFIEK 458
Query: 177 LSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG+K ++ LK ++ E
Sbjct: 459 LKCPNVVLVHGDKNELNRLKNKLIEE 484
Score = 45 (20.9 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 186 HGEKPKMATLKERIQSEL-GIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQY 243
H ++ K + +++ GI +P N + P+ Y A I +N +F Y
Sbjct: 577 HNINNNISNEKHNVNNQIEGIIITEPQNVPILIYPNDIYEYTNLKTAMIDQTINISFPY 635
>TIGR_CMR|CHY_2049 [details] [associations]
symbol:CHY_2049 "metallo-beta-lactamase family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 RefSeq:YP_360868.1
ProteinModelPortal:Q3AAG6 STRING:Q3AAG6 GeneID:3728507
KEGG:chy:CHY_2049 PATRIC:21277179 HOGENOM:HOG000244774 KO:K07576
OMA:GGRIVHH BioCyc:CHYD246194:GJCN-2048-MONOMER Uniprot:Q3AAG6
Length = 504
Score = 218 (81.8 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 62/233 (26%), Positives = 107/233 (45%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ K G ++IPAFA+ R Q+L +L+D E + + +Y + L ++ +K
Sbjct: 233 IEKVYRRNGNLIIPAFAMERTQDLIYILNDLVENKEVPPIDVYIDSPLAVEITKLFKKYP 292
Query: 60 SWTSQKVKETYNAFD----FKNVHNFDRSLIDAP-----GPCVLFATPGMLTGGFSLEVF 110
+ +++ KE N D F +H F S D+ ++ + GM G
Sbjct: 293 MFFNEEYKEKLNRGDDPLAFPGLH-FSVSQEDSVKLNNISRAIIISASGMADAGRIRHHL 351
Query: 111 KH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI-HQLAFSPHTDG 167
KH W P + + L GY T+G KL+ G +++ G +I V+ ++ H S H D
Sbjct: 352 KHNLWRPE--SAVLLVGYQAQDTLGRKLLDGAKEVKIMGEEIAVKAEVYHYDGLSAHADQ 409
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ ++ + S P + LVHGE LK+ I+ + I CY P E++ +
Sbjct: 410 RELLAFIGRFSQKPAQIYLVHGEDEARLNLKKLIEEKYRIPCYLPRYQETISL 462
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 181 (68.8 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 44/149 (29%), Positives = 71/149 (47%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ K + GG VL+P GR EL ++L+ +W + PIYF ++ Y K +
Sbjct: 223 ISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLE 282
Query: 61 WTSQKVKETY-----NAFDFKNVHNF-DRSLID--APGPCVLFATPGMLTGGFSLEVFKH 112
W S + +++ NAF ++V +++ +D PGP V+ A+ L GF+ E+F
Sbjct: 283 WMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVE 342
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNP 141
WA NL+ GT+ L S P
Sbjct: 343 WANDPRNLVLFTETGQFGTLARMLQSAPP 371
Score = 76 (31.8 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYD 209
+ V C + ++ + +DG+ I ++ +SP ++LVH LK+ + + Y
Sbjct: 533 VTVSCSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYA 592
Query: 210 PANNESMCIPS 220
P E++ + S
Sbjct: 593 PQIEETVDVTS 603
>UNIPROTKB|Q9KV92 [details] [associations]
symbol:VC_0264 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K07576 OMA:CHIDHVG PIR:F82345 RefSeq:NP_229920.1
ProteinModelPortal:Q9KV92 DNASU:2614470 GeneID:2614470
KEGG:vch:VC0264 PATRIC:20079570 ProtClustDB:CLSK2517501
Uniprot:Q9KV92
Length = 455
Score = 204 (76.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/222 (27%), Positives = 108/222 (48%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDD--YWERMNLRVPIYFSAGLTIQANMYYKML 58
+ + + GG +LIPAF++GR QEL ++ + ++++ +PI + + + Y+
Sbjct: 231 IERSLTDGGAILIPAFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRF 290
Query: 59 ISWTSQKVKETYN------AFD---FKNVHNFDRSLID---APGPC-VLFATPGMLTGGF 105
++ K AF+ H L++ + G ++ A GM GG
Sbjct: 291 KQLWGREAKARLQMHRHPLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGR 350
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPH 164
++ K P + + L G+ GT+G + SG P++ +EGT+++V IH ++ +S H
Sbjct: 351 IMDYLKALLPDKRTDLILAGFQAEGTLGRSIQSGQPSVWIEGTEVEVNAHIHTMSGYSAH 410
Query: 165 TDGKGIMDLVKFLS-----PQHVILVHGEKP-KMATLKERIQ 200
D K DL++F++ P+ V L+HGE P K A E Q
Sbjct: 411 AD-KA--DLLRFITGIPEKPKQVHLIHGEAPAKQAFAAELTQ 449
>TIGR_CMR|VC_0264 [details] [associations]
symbol:VC_0264 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K07576 OMA:CHIDHVG
PIR:F82345 RefSeq:NP_229920.1 ProteinModelPortal:Q9KV92
DNASU:2614470 GeneID:2614470 KEGG:vch:VC0264 PATRIC:20079570
ProtClustDB:CLSK2517501 Uniprot:Q9KV92
Length = 455
Score = 204 (76.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/222 (27%), Positives = 108/222 (48%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDD--YWERMNLRVPIYFSAGLTIQANMYYKML 58
+ + + GG +LIPAF++GR QEL ++ + ++++ +PI + + + Y+
Sbjct: 231 IERSLTDGGAILIPAFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRF 290
Query: 59 ISWTSQKVKETYN------AFD---FKNVHNFDRSLID---APGPC-VLFATPGMLTGGF 105
++ K AF+ H L++ + G ++ A GM GG
Sbjct: 291 KQLWGREAKARLQMHRHPLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGR 350
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPH 164
++ K P + + L G+ GT+G + SG P++ +EGT+++V IH ++ +S H
Sbjct: 351 IMDYLKALLPDKRTDLILAGFQAEGTLGRSIQSGQPSVWIEGTEVEVNAHIHTMSGYSAH 410
Query: 165 TDGKGIMDLVKFLS-----PQHVILVHGEKP-KMATLKERIQ 200
D K DL++F++ P+ V L+HGE P K A E Q
Sbjct: 411 AD-KA--DLLRFITGIPEKPKQVHLIHGEAPAKQAFAAELTQ 449
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 148 (57.2 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 51/169 (30%), Positives = 74/169 (43%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNVHNFDRSLID---APGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ + SL D P P V+ + L GFS E+
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHL-SLCHSLSDLARVPSPKVVLCSQPDLESGFSREL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS--GNPTIELEGTKIDVRCQI 156
F W N + L GT+ L+ G IELE K RC++
Sbjct: 342 FIQWCQDAKNSVILTYRTTPGTLARYLIDNPGEKRIELEIRK---RCRL 387
Score = 96 (38.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/103 (26%), Positives = 49/103 (47%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT T+ +D+R ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 516 LSDVPTKCTSTTQTLDIRARVMYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDASQDL 575
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P E++ S TH + D+ + S
Sbjct: 576 AESCKAYSGKDIKVYIPKLQETVDATSETHIYQVRLKDSLVSS 618
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 298 GEKRHEVQFAYCCPVNVDELEKF 320
GEKR E++ C + ELE++
Sbjct: 373 GEKRIELEIRKRCRLEGRELEEY 395
>TIGR_CMR|DET_1061 [details] [associations]
symbol:DET_1061 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576
RefSeq:YP_181776.1 ProteinModelPortal:Q3Z7M3 STRING:Q3Z7M3
GeneID:3229629 KEGG:det:DET1061 PATRIC:21609167
ProtClustDB:CLSK2516599 BioCyc:DETH243164:GJNF-1062-MONOMER
Uniprot:Q3Z7M3
Length = 468
Score = 189 (71.6 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 57/232 (24%), Positives = 109/232 (46%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYK--- 56
+++ V GG ++IP+FAL R Q+L L+ + + + ++ + + I +K
Sbjct: 237 INQTVKLGGNIVIPSFALERTQDLLFFLNRFMSEGKIPSLKVFVDSPMAISITKIFKEHP 296
Query: 57 -MLISWTSQKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGG-FSLEV 109
+ TS V + F+F+ +H +++ ++ PC++ A GM TGG +
Sbjct: 297 ELYDRETSGWVNNGSSPFEFEGLHFTNKAADSKAILAEKDPCIIIAGSGMCTGGRIKHHL 356
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
+ + E ++ + G+ GT+G + G + + G V+ +I +L AFS H D
Sbjct: 357 VNNISRPESTILFV-GFQATGTLGRLITDGAKEVRILGQHYPVQARIEELRAFSAHADQP 415
Query: 169 GIMDLVK-FLS-PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ +K F + P+ V + HGE A E I++ LG + P E +
Sbjct: 416 TLLRWLKGFKNKPEMVFVTHGEPETSARFTETIKNTLGWQAKAPEYQEKFIL 467
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 145 (56.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 49/167 (29%), Positives = 76/167 (45%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H L P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLS-DLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI 156
F W N I L GT+ L+ NPT ++ T+I++R ++
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLID-NPTEKV--TEIELRKRV 385
Score = 91 (37.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ I+++ ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 515 LSDVPTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS 617
>TIGR_CMR|CPS_2623 [details] [associations]
symbol:CPS_2623 "metallo-beta-lactamase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:YP_269337.1
ProteinModelPortal:Q481D2 STRING:Q481D2 GeneID:3521490
KEGG:cps:CPS_2623 PATRIC:21468305 OMA:HGPMVII
ProtClustDB:CLSK2524370 BioCyc:CPSY167879:GI48-2685-MONOMER
Uniprot:Q481D2
Length = 451
Score = 181 (68.8 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 52/207 (25%), Positives = 100/207 (48%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQA-NMYYKM- 57
V+ GG +LIP+FA+GR + + +L ++ + ++P+Y + + I N+Y +
Sbjct: 226 VNSTAKKGGALLIPSFAVGRTEAVQHMLASLMKKELIPKLPVYLDSPMAINVFNIYCEHF 285
Query: 58 -LISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
L ++++ E N F + ++L + P ++ A GM TGG L K
Sbjct: 286 DLNRLSNEECLEMCNVATFTRTVDESKALSELIMPHIIIAGSGMATGGRILHHLKRLLGD 345
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
+ GY GT G K+++G +++ G + V+ ++ L S H D + I ++
Sbjct: 346 YRTTVLFTGYLSGGTRGAKMLAGKDNVKIHGKWLPVKARVEVLNGLSGHGDYEDITQWLQ 405
Query: 176 F--LSPQ-HVILVHGEKPKMATLKERI 199
L P+ V+LVHGE ++++ +
Sbjct: 406 ISKLHPKTKVLLVHGEPEASESMRDHL 432
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 142 (55.0 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H L P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLS-DLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI 156
F W N I L GT+ L+ NP+ ++ T+I++R ++
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLID-NPSEKI--TEIELRKRV 385
Score = 90 (36.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ I+++ ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 515 LSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS 617
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 141 (54.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H L P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLS-DLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI 156
F W N I L GT+ L+ NP+ ++ T+I++R ++
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLID-NPSEKV--TEIELRKRV 385
Score = 91 (37.1 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ I+++ ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 515 LSDVPTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS 617
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 141 (54.7 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H L P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLS-DLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI 156
F W N I L GT+ L+ NP+ ++ T+I++R ++
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLID-NPSEKV--TEIELRKRV 385
Score = 90 (36.7 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ I+++ ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 515 LSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS 617
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 142 (55.0 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H L P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLS-DLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI 156
F W N I L GT+ L+ NP+ ++ T+I++R ++
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLID-NPSEKI--TEIELRKRV 385
Score = 90 (36.7 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ I+++ ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 515 LSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS 617
Score = 38 (18.4 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 352 LSEGNIQDFGE--HLQVES 368
L EG ++D GE +QVE+
Sbjct: 648 LEEGELKDDGEDSEMQVEA 666
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 136 (52.9 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 46/153 (30%), Positives = 68/153 (44%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNVHNFDRSLID---APGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ + SL D P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHL-SLCHSLSDLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPT 142
F W N I L GT+ L+ NP+
Sbjct: 342 FIQWCQDSKNSIILTYRTTPGTLARFLID-NPS 373
Score = 88 (36.0 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 24/103 (23%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ ++++ ++ + + +DG I ++ + P+ +++VHG L
Sbjct: 515 LSDVPTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS 617
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 384 TNGLEDKPRTAFFCCTWSAADDKLARKIISAMENRDLV 421
T +E K R + + D + +KII+ M+ R LV
Sbjct: 526 TESMEIKARVTYIDYEGRSDGDSI-KKIINQMKPRQLV 562
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 134 (52.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 43/148 (29%), Positives = 64/148 (43%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H + L P P V+ A+ L GFS E+
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLTLCHGYS-DLARVPSPKVVLASQPDLECGFSREL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLM 137
F W N + L GT+ L+
Sbjct: 342 FIQWCQDPKNSVILTYRTTPGTLARFLI 369
Score = 90 (36.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/103 (24%), Positives = 51/103 (49%)
Query: 137 MSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATL 195
+S PT + T+ ++++ ++ + + +DG I ++ + P+ +I+VHG L
Sbjct: 515 LSDVPTKCVSTTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDL 574
Query: 196 KERIQSELG--IKCYDPANNESMCIPS-THYVKAGASDAFIRS 235
E ++ G IK Y P +E++ S TH + D+ + S
Sbjct: 575 AEACRAFGGKDIKVYTPKLHETVDATSETHIYQVRLKDSLVSS 617
>UNIPROTKB|Q74C32 [details] [associations]
symbol:GSU1843 "RNA exonuclease, beta-lactamase fold
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 137 (53.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 91 PCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS---------GNP 141
PC++ A GM GG + K P I GY AGT G +++ G P
Sbjct: 347 PCIVIAAGGMCAGGRIVNYLKALMPDPRTDILFVGYQAAGTPGREILEAAKQKWETGGRP 406
Query: 142 TIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATL 195
+I+L+G +R +H ++ +S H D + +++ V+ ++ P+ + LVHGE+ L
Sbjct: 407 SIDLDGGTYPLRAAVHTISGYSAHADQRDLVEFVEGITVPPKTIRLVHGEEEARTAL 463
Score = 64 (27.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER 34
G +L+PAF++GR QEL ++D R
Sbjct: 242 GALLVPAFSIGRTQELLYEIEDLISR 267
>TIGR_CMR|GSU_1843 [details] [associations]
symbol:GSU_1843 "metallo-beta-lactamase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004527
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 137 (53.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 91 PCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS---------GNP 141
PC++ A GM GG + K P I GY AGT G +++ G P
Sbjct: 347 PCIVIAAGGMCAGGRIVNYLKALMPDPRTDILFVGYQAAGTPGREILEAAKQKWETGGRP 406
Query: 142 TIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATL 195
+I+L+G +R +H ++ +S H D + +++ V+ ++ P+ + LVHGE+ L
Sbjct: 407 SIDLDGGTYPLRAAVHTISGYSAHADQRDLVEFVEGITVPPKTIRLVHGEEEARTAL 463
Score = 64 (27.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER 34
G +L+PAF++GR QEL ++D R
Sbjct: 242 GALLVPAFSIGRTQELLYEIEDLISR 267
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 143 (55.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 42/142 (29%), Positives = 62/142 (43%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG VL+P A R ELC +LD++W L PI F + + + Y K +I W
Sbjct: 222 GGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTSTKTIDYAKSMIEWMGDN 281
Query: 66 VKETY----NAFDFKNVHNF-DRSLID--APGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
+ + N +F+N++ D S I PGP V+ AT L GFS +
Sbjct: 282 IVRDFGINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQRILLDLMSENS 341
Query: 119 N---LITLPGYCLAGTIGNKLM 137
N L T C ++ N+ +
Sbjct: 342 NDLILFTQRSRCPQNSLANQFI 363
Score = 61 (26.5 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS 201
I V CQ+ + DG+ + ++ ++P+ ++L+H + +K+ S
Sbjct: 566 IRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCAS 617
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 41/163 (25%), Positives = 68/163 (41%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIY-------FSAGLTIQANM 53
+++ + GG VLIP GR EL + +++YW + N + +Y FS + A
Sbjct: 227 INRNLRDGGNVLIPVDTAGRVLELLLCIENYWSK-NKSLALYSVVFLGRFSFSVCQFARS 285
Query: 54 YYKMLISWTSQKVKETY-NAFDFKNVHNFD--RSLIDAPGPCVLFATPGM-LTGGFSLEV 109
+ + S S K ++ N F FK++ L + P + T L GFS E+
Sbjct: 286 QLEFMSSTASVKFEQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSREL 345
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV 152
F W LI ++ +KL+ T G I++
Sbjct: 346 FIQWCSDPKTLILFTQKIPKDSLADKLIKQYSTPNGRGKCIEI 388
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/89 (16%), Positives = 47/89 (52%)
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIK-C 207
++ + C+I + + +DG+ I +++ ++P ++L+ G + + +++ ++ + K
Sbjct: 550 RLPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKLVLIRGSEQQSQSIENYVKENIRTKGI 609
Query: 208 YDPANNESMCIPS-THYVKAGASDAFIRS 235
Y P+ E + + S T+ + D+ + +
Sbjct: 610 YIPSIGEQLDLTSDTNVYELLLKDSLVNT 638
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 48/163 (29%), Positives = 73/163 (44%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKM 57
V + + G G VLI GR EL LLD W + + +Y A L + N+ + K
Sbjct: 223 VLETLRGDGSVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 58 LISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ W S K+ + N F F+++ H L P P V+ A+ L GFS ++
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLS-DLARVPSPKVVLASQPDLECGFSRDL 341
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV 152
F W N I L GT+ L+ NP+ ++ T+I+V
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLID-NPSEKI--TEIEV 381
>UNIPROTKB|Q8EJC6 [details] [associations]
symbol:SO_0541 "RNA-metabolizing metallo-beta-lactamase
family protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774
KO:K07576 RefSeq:NP_716177.2 ProteinModelPortal:Q8EJC6
DNASU:1168409 GeneID:1168409 KEGG:son:SO_0541 PATRIC:23520762
ProtClustDB:CLSK2516780 Uniprot:Q8EJC6
Length = 480
Score = 137 (53.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 51/195 (26%), Positives = 91/195 (46%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQAN-MY---YKMLIS--- 60
G +L+PAF++GRAQEL L Y + +L R I + + I+A +Y Y ++
Sbjct: 244 GNILLPAFSVGRAQELLYLFHLYAKEWDLGRWKICLDSPMAIEATRVYVNNYPLMDEDFK 303
Query: 61 -WTSQKVKETYNAFDFKNVHNFDRSLI--DAPGPCVLFATPGMLTGGFSLEVFKH--WAP 115
+T Q + + + + + S+ + ++ A GM GG +H W
Sbjct: 304 RFTRQHPGQHPLLSNVEFIQTTEESIALNEVHKGLIIIAGSGMCNGGRIRSHLEHNLWR- 362
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLV 174
SE ++I + G+ GT G L+ G + + G ++V ++H + S H D ++
Sbjct: 363 SECDVI-ICGFQALGTPGRALVDGAKELTIHGNSVNVAAKLHTVGGLSAHADQAELLRWY 421
Query: 175 KFLSPQH-VILVHGE 188
+ Q ++LVHGE
Sbjct: 422 RHFEEQPPLVLVHGE 436
>TIGR_CMR|SO_0541 [details] [associations]
symbol:SO_0541 "metallo-beta-lactamase family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003824 "catalytic activity"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_716177.2
ProteinModelPortal:Q8EJC6 DNASU:1168409 GeneID:1168409
KEGG:son:SO_0541 PATRIC:23520762 ProtClustDB:CLSK2516780
Uniprot:Q8EJC6
Length = 480
Score = 137 (53.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 51/195 (26%), Positives = 91/195 (46%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQAN-MY---YKMLIS--- 60
G +L+PAF++GRAQEL L Y + +L R I + + I+A +Y Y ++
Sbjct: 244 GNILLPAFSVGRAQELLYLFHLYAKEWDLGRWKICLDSPMAIEATRVYVNNYPLMDEDFK 303
Query: 61 -WTSQKVKETYNAFDFKNVHNFDRSLI--DAPGPCVLFATPGMLTGGFSLEVFKH--WAP 115
+T Q + + + + + S+ + ++ A GM GG +H W
Sbjct: 304 RFTRQHPGQHPLLSNVEFIQTTEESIALNEVHKGLIIIAGSGMCNGGRIRSHLEHNLWR- 362
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLV 174
SE ++I + G+ GT G L+ G + + G ++V ++H + S H D ++
Sbjct: 363 SECDVI-ICGFQALGTPGRALVDGAKELTIHGNSVNVAAKLHTVGGLSAHADQAELLRWY 421
Query: 175 KFLSPQH-VILVHGE 188
+ Q ++LVHGE
Sbjct: 422 RHFEEQPPLVLVHGE 436
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 138 (53.6 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 50/165 (30%), Positives = 75/165 (45%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLT-IQANM--YYKMLISW 61
V G VLI GR EL +LD W+ + Y A L + N+ + K I W
Sbjct: 227 VRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEW 286
Query: 62 TSQKVKETY-----NAFDFKNVHNFDRSLIDA---P-GPCVLFATPGMLTGGFSLEVFKH 112
S K+ + + N F FK++ SL D P GP V+ A+ L GF+ ++F
Sbjct: 287 MSDKLTKAFEGARNNPFQFKHIQ-LCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQ 345
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQI 156
WA + N I L GT+ +L+ P ++E +DVR ++
Sbjct: 346 WASNANNSIILTTRTSPGTLAMELVENCAPGKQIE---LDVRRRV 387
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 96 (38.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 35/142 (24%), Positives = 59/142 (41%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQAN---MYYKMLISWTSQK 65
G +I GR EL LLD W + + Y ++ A+ + K + W ++K
Sbjct: 230 GDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEK 289
Query: 66 V------KETYNAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ YN F K+V H+ + L+ P V+ + + GFS E+F W
Sbjct: 290 LFKYDSSSARYNPFTLKHVTLCHSH-QELMRVRSPKVVLCSSQDMESGFSRELFLDWCSD 348
Query: 117 EMNLITLPGYCLAGTIGNKLMS 138
N + L + T+ KL++
Sbjct: 349 PRNGVILTARPASFTLAAKLVN 370
Score = 71 (30.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 141 PT--IELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEK 189
PT +E + +++V C+I + + +DG+ L+ L P+ +I+VHG +
Sbjct: 553 PTKCVEFKN-RVEVSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHGSR 602
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 96 (38.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 35/142 (24%), Positives = 59/142 (41%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQAN---MYYKMLISWTSQK 65
G +I GR EL LLD W + + Y ++ A+ + K + W ++K
Sbjct: 230 GDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEK 289
Query: 66 V------KETYNAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ YN F K+V H+ + L+ P V+ + + GFS E+F W
Sbjct: 290 LFKYDSSSARYNPFTLKHVTLCHSH-QELMRVRSPKVVLCSSQDMESGFSRELFLDWCSD 348
Query: 117 EMNLITLPGYCLAGTIGNKLMS 138
N + L + T+ KL++
Sbjct: 349 PRNGVILTARPASFTLAAKLVN 370
Score = 71 (30.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 141 PT--IELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEK 189
PT +E + +++V C+I + + +DG+ L+ L P+ +I+VHG +
Sbjct: 553 PTKCVEFKN-RVEVSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHGSR 602
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 423 410 0.00079 118 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 617 (66 KB)
Total size of DFA: 281 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.74u 0.19s 30.93t Elapsed: 00:00:02
Total cpu time: 30.75u 0.19s 30.94t Elapsed: 00:00:02
Start: Fri May 10 23:04:32 2013 End: Fri May 10 23:04:34 2013