BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043917
(423 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/421 (70%), Positives = 347/421 (82%), Gaps = 10/421 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVAGGGKVLIP FALGRAQELCILLDDYWERMNL+VPIYFSAGLTIQAN+YYK+LIS
Sbjct: 224 VHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANLYYKILIS 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQKVKETY NAFDFK+VHNFDRSLI+APGPCVLFATPGM++GGFSLEVFK WAP E
Sbjct: 284 WTSQKVKETYATRNAFDFKHVHNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
MNLITLPGYC+AGT+G+KLMSG PT I L+ T+IDVRCQIHQL+FSPHTD KGIMDL K
Sbjct: 344 MNLITLPGYCVAGTVGHKLMSGKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP++VILVHGEKPKM +LKERIQ+EL I CY PAN +++ IPST YVKA AS+ FIRS
Sbjct: 404 FLSPRNVILVHGEKPKMVSLKERIQTELRIPCYLPANCDAVHIPSTIYVKAHASNTFIRS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C+NPNF++LK E+ S + T T PL + DERVAEGIL++EK +KA+VVHQD+LLL
Sbjct: 464 CLNPNFRFLKRSKEDNSDQVLRNTNPTAPLQVNDERVAEGILIMEKGKKARVVHQDDLLL 523
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
ML +K+H+VQFAYCC +D LE+ T A L D K S ++LL +LS S
Sbjct: 524 MLRQKKHDVQFAYCCAAQLDNLEE---TRNRDDALGLSD--KCSSLQLLFKELSNYFSGV 578
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
NI+D GEHLQVESFH+SVCLKD CPYRI + + + T +FCC+WSAAD+KLA +IISAM
Sbjct: 579 NIEDLGEHLQVESFHVSVCLKDNCPYRIIDNSQKEAVTVYFCCSWSAADEKLAWEIISAM 638
Query: 416 E 416
E
Sbjct: 639 E 639
>gi|297737628|emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/425 (69%), Positives = 348/425 (81%), Gaps = 25/425 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVA GGKVLIP FALGRAQELCILLD+YWERMNL+VPIYFSAGLTIQANMYYKMLIS
Sbjct: 279 VHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLKVPIYFSAGLTIQANMYYKMLIS 338
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+Q+VKETY NAFDFKNV +FDRSLI+APGPCVLFATPGM++GGFSLEVFK WAPSE
Sbjct: 339 WTNQRVKETYATHNAFDFKNVRSFDRSLINAPGPCVLFATPGMISGGFSLEVFKLWAPSE 398
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
MNL+TLPGYCLAGTIG+KL +G PT I+L+ +I VRCQIHQL+FSPHTD KGIMDLVK
Sbjct: 399 MNLVTLPGYCLAGTIGHKLTTGKPTKIDLDKDIQISVRCQIHQLSFSPHTDAKGIMDLVK 458
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEKPKMA+LK +I+S+LGI+CY PANN+++CIPST ++KA S FIRS
Sbjct: 459 FLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTCWLKADTSKTFIRS 518
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
+NPNF+++K+ SE+KS SK TE T L + DERVAEGIL++EKS+KAKVVHQ+ELLL
Sbjct: 519 SLNPNFKFVKTISEDKSNLVSKETEATSVLQVHDERVAEGILIVEKSKKAKVVHQNELLL 578
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
M+G+ +H+VQFAYCCP ++ ++ S + LL AKL+ KL G
Sbjct: 579 MIGKDKHDVQFAYCCP------------------NVVSTSDECSWLHLLFAKLATKLG-G 619
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
NIQDFG+HLQV+S H+SVCLKD CPYR T+G + +P FFCCTWS AD LA +IIS M
Sbjct: 620 NIQDFGQHLQVDSIHISVCLKDICPYRTTDGPQKEP-AVFFCCTWSVADVNLAWEIISIM 678
Query: 416 ENRDL 420
EN DL
Sbjct: 679 ENLDL 683
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/377 (70%), Positives = 319/377 (84%), Gaps = 6/377 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVA GGKVLIP FALGRAQELCILLD+YWERMNL+VPIYFSAGLTIQANMYYKMLIS
Sbjct: 1473 VHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLKVPIYFSAGLTIQANMYYKMLIS 1532
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+Q+VKETY NAFDFKNV +FDRSLI+APGPCVLFATPGM++GGFSLEVFK WAPSE
Sbjct: 1533 WTNQRVKETYATHNAFDFKNVRSFDRSLINAPGPCVLFATPGMISGGFSLEVFKLWAPSE 1592
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
MNL+TLPGYCLAGTIG+KL +G PT I+L+ +I VRCQIHQL+FSPHTD KGIMDLVK
Sbjct: 1593 MNLVTLPGYCLAGTIGHKLTTGKPTKIDLDKDIQISVRCQIHQLSFSPHTDAKGIMDLVK 1652
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEKPKMA+LK +I+S+LGI+CY PANN+++CIPST ++KA S FIRS
Sbjct: 1653 FLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTCWLKADTSKTFIRS 1712
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
+NPNF+++K+ SE+KS SK TE T L + DERVAEGIL++EKS+KAKVVHQ+ELLL
Sbjct: 1713 SLNPNFKFVKTISEDKSNLVSKETEATSVLQVHDERVAEGILIVEKSKKAKVVHQNELLL 1772
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
M+G+ +H+VQFAYCCPV + LE+ + ++ ++ S + LL AKL+ KL G
Sbjct: 1773 MIGKDKHDVQFAYCCPVQIGNLERTKGMDFALSKNVVSTSDECSWLHLLFAKLATKLG-G 1831
Query: 356 NIQDFGEHLQVESFHLS 372
NIQDFG+HLQV+S H+S
Sbjct: 1832 NIQDFGQHLQVDSIHIS 1848
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/437 (62%), Positives = 331/437 (75%), Gaps = 25/437 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+A GGKVLIP FALGRAQELC+LLDDYWERMNL+ PIY SAGLT+QANMYYKMLIS
Sbjct: 224 VHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLIS 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQKVKETY NAFDFKNV FDRS+IDAPGPCVLFATPGM++ GFSLEVFK WAPS+
Sbjct: 284 WTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSK 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NLITLPGYC+AGT+G+KLMSG PT I+L+ T+IDV+CQ+HQLAFSPHTD KGIMDLVK
Sbjct: 344 LNLITLPGYCVAGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEKPKMA LKERI SELGI C+DPANNE++ I ST VKA AS FI+S
Sbjct: 404 FLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQS 463
Query: 236 CMNPNFQYLKSG-----SEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQ 290
C PNF++LK ++ S + + +PL + D+RV EGILV+E +K K +HQ
Sbjct: 464 CSTPNFKFLKRNLIDPDLKDLSYKAERTSNMLIPLQVSDDRVNEGILVMENGKKTKALHQ 523
Query: 291 DELLLMLGEKRHEVQFAYCCPV---NVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAK 347
DELLL+LG++ HEV+FA+C P+ ++DE+ + S KS + L K
Sbjct: 524 DELLLLLGQQEHEVRFAHCRPIYFGSLDEIHVMDSLS-----------RKSLWLSQLSFK 572
Query: 348 LSRKLSEGNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFF-CCTWSAADDK 406
LS +LS+ N+Q+ GE+LQVES LS+C K+ CPYR + ++++ F CC+W AD+
Sbjct: 573 LSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTIDRIKNESTAMVFCCCSWLVADEI 632
Query: 407 LARKIISAMENRDLVET 423
LA KIIS +E DL T
Sbjct: 633 LAWKIISILEKHDLGST 649
>gi|449518964|ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like, partial [Cucumis
sativus]
Length = 472
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/432 (62%), Positives = 322/432 (74%), Gaps = 36/432 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+A GGKVLIP FALGRAQELC+LLDDYWERMNL+ PIY SAGLT+QANMYYKMLIS
Sbjct: 68 VHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLIS 127
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQKVKETY NAFDFKNV FDRS+IDAPGPCVLFATPGM++ GFSLEVFK WAPS+
Sbjct: 128 WTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSK 187
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NLITLPGYC+AGT+G+KLMSG PT I+L+ T+IDV+CQ+HQLAFSPHTD KGIMDLVK
Sbjct: 188 LNLITLPGYCVAGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVK 247
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEKPKMA LKERI SELGI C+DPANNE++ I ST VKA AS FI+S
Sbjct: 248 FLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQS 307
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C PNF L G L + D+RV EGILV+E +K K +HQDELLL
Sbjct: 308 CSTPNFN-LSCGP---------------ALQVSDDRVNEGILVMENGKKXKALHQDELLL 351
Query: 296 MLGEKRHEVQFAYCCPV---NVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKL 352
+LG++ HEV+FA+C P+ ++DE+ + S KS + L KLS +L
Sbjct: 352 LLGQQEHEVRFAHCRPIYFGSLDEIHVMDSLS-----------RKSLWLSQLSFKLSTEL 400
Query: 353 SEGNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFF-CCTWSAADDKLARKI 411
S+ N+Q+ GE+LQVES LS+C K+ CPYR + ++++ F CC+W AD+ LA KI
Sbjct: 401 SDRNVQNLGEYLQVESITLSICSKENCPYRTIDRIKNESTAMVFCCCSWLVADEILAWKI 460
Query: 412 ISAMENRDLVET 423
IS +E DL T
Sbjct: 461 ISILEKHDLGST 472
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/324 (76%), Positives = 285/324 (87%), Gaps = 5/324 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVAGGGKVLIP FALGRAQELC+LLDDYWERMNL+VPIYFSAGLTIQANMYYKMLI
Sbjct: 224 VHKCVAGGGKVLIPTFALGRAQELCLLLDDYWERMNLKVPIYFSAGLTIQANMYYKMLIG 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+KETY NAFDFKNV+ FDRSL+DAPGPCVLFATPGM++GGFSLEVFK WAP E
Sbjct: 284 WTSQKIKETYTSRNAFDFKNVYTFDRSLLDAPGPCVLFATPGMISGGFSLEVFKRWAPCE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
MNL+TLPGYC+AGTIG+KLMSG P+ I L+ T+IDVRCQIHQL+FSPHTD KGIMDLVK
Sbjct: 344 MNLVTLPGYCVAGTIGHKLMSGKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEKPKMA+LKERIQSEL I+CY PAN E++CIPST +VKA AS+AFIRS
Sbjct: 404 FLSPKHVILVHGEKPKMASLKERIQSELEIQCYVPANCETLCIPSTLFVKADASEAFIRS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C++PNF++L ++ S T T L + DERVAEGILV+EK++KA+VVHQDELLL
Sbjct: 464 CLSPNFRFLNKSLKDTSDLVLHSTNATSRLEVSDERVAEGILVVEKNKKARVVHQDELLL 523
Query: 296 MLGEKRHEVQFAYCCPVNVDELEK 319
MLG K+HEVQFAYCCPV VD +++
Sbjct: 524 MLGAKQHEVQFAYCCPVQVDNMDQ 547
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 272/467 (58%), Positives = 328/467 (70%), Gaps = 58/467 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQ-ELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLI 59
VH C+A GGKVLIP FALGRAQ ELC+LLDDYWERMNL+ PIY SAGLT+QANMYYKMLI
Sbjct: 256 VHNCLASGGKVLIPTFALGRAQQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLI 315
Query: 60 SWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
SWTSQKVKETY NAFDFKNV FDRS+IDAPGPCVLFATPGM++ GFSLEVFK WAPS
Sbjct: 316 SWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPS 375
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPT-IELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
++NLITLPGYC+AGT+G+KLMSG PT I+L+ D + +HQLAFSPHTD KGIMDLVK
Sbjct: 376 KLNLITLPGYCVAGTVGHKLMSGKPTKIDLDK---DTQIDVHQLAFSPHTDSKGIMDLVK 432
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEKPKMA LKERI SELGI C+DPANNE++ I ST +KA AS FI+S
Sbjct: 433 FLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQS 492
Query: 236 CMNPNFQYLKSGSEE-----------KSVSGS-----KCTE------------------- 260
C PNF++LK + K+V S +C+
Sbjct: 493 CSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDSSLS 552
Query: 261 GTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPV---NVDEL 317
G L + D+RV EGILV+E +K K +HQDELLL+LGE+ HEV+FA+C P+ ++DE+
Sbjct: 553 GGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEI 612
Query: 318 EKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQDFGEHLQVESFHLSVCLKD 377
+ S KS + L KLS +LS+ N+Q+ GE+LQVES LS+C K+
Sbjct: 613 HVMDSLS-----------RKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKE 661
Query: 378 TCPYRITNGLEDKPRTAFF-CCTWSAADDKLARKIISAMENRDLVET 423
CPYR TN +E++ F CC+W AD+ LA KIIS +E DL T
Sbjct: 662 NCPYRTTNRIENESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 708
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/421 (57%), Positives = 301/421 (71%), Gaps = 39/421 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVAGGGK LIP+FALGRAQELC+LLDDYWERMN++VPIYFS+GLTIQANMYYKMLIS
Sbjct: 224 VHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLIS 283
Query: 61 WTSQKVKE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQ VKE T+N FDFKNV +FDRSLI APGPCVLFATPGML GFSLEVFKHWAPS
Sbjct: 284 WTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSP 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NL+ LPGY +AGT+G+KLM+G PT ++L GTK+DVRC++HQ+AFSPHTD KGIMDL K
Sbjct: 344 LNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP++V+LVHGEKP M LKE+I SEL I C+ PAN E++ ST Y+KA ASD F++S
Sbjct: 404 FLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C NPNF++ S L + D R A+G+LV+EKS+KAK+VHQDE+
Sbjct: 464 CSNPNFKFSNSTQ----------------LRVTDHRTADGVLVIEKSKKAKIVHQDEISE 507
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
+L EK H V A+CCPV V + + + LI+ L AK+ + +S
Sbjct: 508 VLHEKNHVVSLAHCCPVKV---------------KGESEDDDVDLIKQLSAKILKTVSGA 552
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
I + LQV SF S+CLKD C +R ++ + F CC WS AD +L +II+A+
Sbjct: 553 QIHESENCLQVASFKGSLCLKDKCMHRSSSSSSE---AVFLCCNWSIADLELGWEIINAI 609
Query: 416 E 416
+
Sbjct: 610 K 610
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/421 (57%), Positives = 298/421 (70%), Gaps = 39/421 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVAGGGK LIP+FALGRAQELC+LLDDYWERMN++VPIYFS+GLTIQANMYYKMLIS
Sbjct: 224 VHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLIS 283
Query: 61 WTSQKVKE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQ VKE T+N FDFKNV +FDRSLI APGPCVLFA PGML G SLEVFKHWAPS
Sbjct: 284 WTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFAIPGMLCAGLSLEVFKHWAPSP 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NL+ L GY +AGT+G+KLM+G PT ++L GTK+DVRC++HQ+AFSPHTD KGIMDL K
Sbjct: 344 LNLVALLGYSVAGTVGHKLMAGKPTTVDLHNGTKVDVRCKVHQVAFSPHTDAKGIMDLTK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP++V+LVHGEKP M LKE+I SEL I C+ PAN E++ ST Y+KA ASD F++S
Sbjct: 404 FLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C NPNF++ S L + D R A+G+LV+EKS+KAK+VHQDE+
Sbjct: 464 CSNPNFKFSNSTQ----------------LRVTDHRTADGVLVIEKSKKAKIVHQDEISE 507
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
+L EK H V A+CCPV V + + + LI+ L AK+ + +S
Sbjct: 508 VLHEKNHVVSLAHCCPVKV---------------KGESEDDDVDLIKQLSAKILKTVSGA 552
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
I + LQV SF S+CLKD C +R ++ + F CC WS AD +L +II+A+
Sbjct: 553 QIHESENCLQVASFKGSLCLKDKCMHRSSSSSSE---AVFLCCNWSIADLELGWEIINAI 609
Query: 416 E 416
+
Sbjct: 610 K 610
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/308 (71%), Positives = 256/308 (83%), Gaps = 21/308 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+ GGKVLIP FALGRAQELCILL+DYWERMNL+VPIYFSAGLTIQAN YYKMLI
Sbjct: 224 VHKCVSCGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSAGLTIQANAYYKMLIR 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT QK+K+TY NAFDFKNV F+RS+IDAPGPCVLFATPGML+GGFS+EVFKHWA SE
Sbjct: 284 WTRQKIKDTYSKHNAFDFKNVQKFERSMIDAPGPCVLFATPGMLSGGFSVEVFKHWAVSE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSG-NPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
NL++LPGYC+ GTIG+KLMS + ++L+ TKIDVRCQIHQLAFSPHTD KGIMDLV
Sbjct: 344 NNLVSLPGYCVPGTIGHKLMSDKHDKVDLDPNTKIDVRCQIHQLAFSPHTDSKGIMDLVN 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HVILVHGEK KMA+LKE+I SELGI+CYDPANNE++ IPS +YV A SD FIRS
Sbjct: 404 FLSPKHVILVHGEKHKMASLKEKIHSELGIQCYDPANNETVTIPSANYVYAETSDTFIRS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C++PNF + K S L ++DERVAEG+LVLEK +KAK+VHQDELLL
Sbjct: 464 CLSPNFTFQKCSS----------------LQVEDERVAEGVLVLEKGKKAKIVHQDELLL 507
Query: 296 MLGEKRHE 303
ML E++H+
Sbjct: 508 MLEEQKHD 515
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/311 (70%), Positives = 258/311 (82%), Gaps = 7/311 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+GGGKVLIP FALGRAQEL ILLDDYWERMNL+VPIYFS+GLTIQAN Y+KMLI
Sbjct: 224 VHKCVSGGGKVLIPTFALGRAQELRILLDDYWERMNLKVPIYFSSGLTIQANTYHKMLIG 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K+TY NAFDFKNVH F+RS++DAPGPCVLFATPGML GGFSLEVFKHWAPSE
Sbjct: 284 WTSQKIKDTYSTHNAFDFKNVHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
NL+ LPGYC+AGT+G++L SG PT ++ + T+IDVRCQIHQLAFS HTD KGIMDLVK
Sbjct: 344 KNLVALPGYCMAGTVGHRLTSGKPTKVDTDPDTQIDVRCQIHQLAFSAHTDSKGIMDLVK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP+HV+LVHG+KPKM +LKERI SELGI C PANNE + I ST YV A ASD F ++
Sbjct: 404 FLSPKHVMLVHGDKPKMVSLKERIDSELGIPCSHPANNEIVTISSTQYVNAEASDTFTKN 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLE--KSEKAKVVHQDEL 293
C+NPNF++ K S + S T L ++DERVA+G+LV+E ++KAK+VH+DE+
Sbjct: 464 CLNPNFKFQKCSSMDTCNSTLIDRNLTPELQVEDERVADGVLVMENNNNKKAKIVHEDEI 523
Query: 294 LLMLGEKRHEV 304
LLML EK+HEV
Sbjct: 524 LLMLDEKKHEV 534
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/319 (67%), Positives = 255/319 (79%), Gaps = 21/319 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVAGGGK LIP+FALGRAQELC+LLDDYWERMN++VPIYFS+GLTIQANMYYKMLIS
Sbjct: 224 VHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLIS 283
Query: 61 WTSQKVKE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQ VKE T+N FDFKNV +FDRSLI APGPCVLFATPGML GFSLEVFKHWAPS
Sbjct: 284 WTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSP 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NL+ LPGY +AGT+G+KLMSG PT ++L GTK+DVRC+IHQ+AFSPHTD KGIMDL K
Sbjct: 344 LNLVALPGYSVAGTVGHKLMSGKPTTVDLYNGTKVDVRCKIHQVAFSPHTDAKGIMDLTK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP++V+LVHGEKP M LK++I SEL I C+ PAN E++ + ST Y+KA ASD F++S
Sbjct: 404 FLSPKNVVLVHGEKPSMMILKDKITSELDIPCFVPANGETVSVASTTYIKANASDMFLKS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C +PNF++ S L + D+R A+G+LV+EKS+KAK+VHQDE+
Sbjct: 464 CSSPNFKFSNSTQ----------------LRVTDQRTADGVLVIEKSKKAKIVHQDEVSE 507
Query: 296 MLGEKRHEVQFAYCCPVNV 314
+L EK H V AYCCPV V
Sbjct: 508 VLHEKNHVVSLAYCCPVKV 526
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/370 (60%), Positives = 270/370 (72%), Gaps = 36/370 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVAGGGK LIP+FALGRAQELC+LLDDYWERMN++VPIYFS+GLTIQANMYYKMLIS
Sbjct: 224 VHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLIS 283
Query: 61 WTSQKVKE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQ VKE T+N FDFKNV +FDRSLI APGPCVLFATPGML GFSLEVFKHWAPS
Sbjct: 284 WTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSP 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+NL+ LPGY +AGT+G+KLM+G PT ++L GTK+DVRC++HQ+AFSPHTD KGIMDL K
Sbjct: 344 LNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTK 403
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP++V+LVHGEKP M LKE+I SEL I C+ PAN E++ ST Y+KA ASD F++S
Sbjct: 404 FLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKS 463
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
C NPNF++ S L + D R A+G+LV+EKS+KAK+VHQDE+
Sbjct: 464 CSNPNFKFSNSTQ----------------LRVTDHRTADGVLVIEKSKKAKIVHQDEISE 507
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
+L EK H V A+CCPV V + + + LI+ L AK+ + +S
Sbjct: 508 VLHEKNHVVSLAHCCPVKV---------------KGESEDDDVDLIKQLSAKILKTVSGA 552
Query: 356 NIQDFGEHLQ 365
I + LQ
Sbjct: 553 QIHESENCLQ 562
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/332 (62%), Positives = 254/332 (76%), Gaps = 14/332 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+ GGKVLIP FALGRAQELCILLDDYWERMNL++PIYFSAGLTIQANMYYKMLI
Sbjct: 228 VHKCVSEGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIG 287
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K++Y N FDFK+V +F+RS I+ PGPCVLFATPGM++GGFSLEVFK WA S+
Sbjct: 288 WTSQKIKDSYTVQNPFDFKHVCHFERSFINDPGPCVLFATPGMISGGFSLEVFKRWATSD 347
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
NL+TLPGYC+AGTIG+KLMSG PT I+++ T +DVRCQIHQL+FSPHTD KGIMDL +
Sbjct: 348 KNLVTLPGYCVAGTIGHKLMSGKPTRIDIDKDTHVDVRCQIHQLSFSPHTDSKGIMDLTE 407
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP HVILVHGEKP+MA LK+RI+SELG+ CY PANNE++ IP+T +K A++ FI +
Sbjct: 408 FLSPNHVILVHGEKPQMAFLKDRIESELGMSCYYPANNETVSIPTTQNMKISATEKFITN 467
Query: 236 CMNPNFQ-YLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELL 294
C + L+ S+ S E DER+AEGIL++EKS+ K++ +DE L
Sbjct: 468 CAALQARDSLQKSDLISSIHLSGVNE--------DERLAEGILLMEKSKAPKILCEDEFL 519
Query: 295 LMLGEKRHEVQFAYCCPVNVDELEKFTTTSLT 326
+LG RH VQF P ++E E LT
Sbjct: 520 KLLGTDRHSVQFEPLLPSRIEEAEAAIVDDLT 551
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/326 (64%), Positives = 253/326 (77%), Gaps = 24/326 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+GGGKVLIPAFALGRAQELCILLDDYWERMNL++PIYFSAGLTIQANMYYKMLI
Sbjct: 227 VHKCVSGGGKVLIPAFALGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIG 286
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K +Y N FDFK+V +F+RS I+ PGPCVLFATPGM++GGFSLEVFK WAPSE
Sbjct: 287 WTSQKIKNSYTVHNPFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEVFKKWAPSE 346
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
NL+TLPGYC+AGTIG+KLMSG PT I+++ T IDVRCQIHQL+FSPHTD KGIMDL +
Sbjct: 347 KNLVTLPGYCVAGTIGHKLMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTE 406
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
FLSP HVILVHGEKP+MA LKERI+SELG++C PANNE++ IP++ +K A++ FI S
Sbjct: 407 FLSPSHVILVHGEKPQMAFLKERIESELGMQCCYPANNETVSIPTSQNLKINATEKFIVS 466
Query: 236 -CM-----NPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVH 289
CM +P Q L G G +P + E VAEG+L++EKS+ K++
Sbjct: 467 FCMDETENDPQKQNLNFG-------------GDMPQGCRTEGVAEGVLLMEKSKTPKILR 513
Query: 290 QDELLLMLGEKRHEVQFAYCCPVNVD 315
+DELL LG + H V F P +++
Sbjct: 514 EDELLHSLGMETHFVHFEPLHPSSIE 539
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/310 (64%), Positives = 243/310 (78%), Gaps = 10/310 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+GGGKVLIP FALGRAQELC+LLDDYWERM+L+VPIYFSAGLTIQAN+YYKMLI
Sbjct: 227 VHKCVSGGGKVLIPTFALGRAQELCMLLDDYWERMDLKVPIYFSAGLTIQANVYYKMLIG 286
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K+++ N FDFK+V +F+RS I+ PGPCVLFATPGM++GGFSLE FK WAPSE
Sbjct: 287 WTSQKIKDSHAVHNPFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEAFKKWAPSE 346
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
NLITLPGYC++GTIG+KLM G PT I+ + IDVRCQIHQLAFSPHTD KGIMDL +F
Sbjct: 347 KNLITLPGYCVSGTIGHKLMCGKPTRIDYKDIHIDVRCQIHQLAFSPHTDSKGIMDLTEF 406
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
LSP+HVILVHGEKP+MA LKERI+SELG+ CY P NNES+ IP+T +K A++ FI SC
Sbjct: 407 LSPKHVILVHGEKPQMAFLKERIESELGMPCYYPGNNESVSIPTTQNLKMSATERFITSC 466
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
++ G C G + DE AEGIL++EK + K++ +DELL +
Sbjct: 467 A------VEQGKRSLHKRNLICGTGLSEVIGSDEEAAEGILLMEKHKSPKILCEDELLEV 520
Query: 297 LGEKRHEVQF 306
LG ++H VQF
Sbjct: 521 LGMEQHLVQF 530
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/310 (64%), Positives = 243/310 (78%), Gaps = 10/310 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+GGGKVLIP FALGRAQELC+LLDDYWERM L+VPIYFSAGLTIQAN+YYKMLI
Sbjct: 227 VHKCVSGGGKVLIPTFALGRAQELCMLLDDYWERMGLKVPIYFSAGLTIQANVYYKMLIG 286
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K+++ N FDFK+V +F+RS I+ PGPCVLFATPGM+TGGFSLE FK WAPSE
Sbjct: 287 WTSQKIKDSHTVHNPFDFKHVCHFERSFINNPGPCVLFATPGMITGGFSLEAFKKWAPSE 346
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
NL+TLPGYC++GTIG+KLM G PT ++ E T IDVRCQIHQLAFSPHTD KGIMDL +F
Sbjct: 347 KNLVTLPGYCVSGTIGHKLMCGKPTRVDYEDTHIDVRCQIHQLAFSPHTDSKGIMDLTEF 406
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
LSP++VILVHGEKP+MA LKERI+SELG+ CY P NNES+ IP+T +K A++ FI C
Sbjct: 407 LSPKNVILVHGEKPQMAFLKERIESELGMPCYYPGNNESVSIPTTQNLKMSATERFITGC 466
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
Q +S + + G+ +E DE EG+L+++K + K++ +DELL +
Sbjct: 467 AVE--QGKRSLHKRNLIYGTGLSEEIG----SDEAAGEGVLLMQKHKSPKILCEDELLEV 520
Query: 297 LGEKRHEVQF 306
LG RH VQF
Sbjct: 521 LGMGRHLVQF 530
>gi|217075845|gb|ACJ86282.1| unknown [Medicago truncatula]
gi|388517311|gb|AFK46717.1| unknown [Medicago truncatula]
Length = 277
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/277 (67%), Positives = 226/277 (81%), Gaps = 7/277 (2%)
Query: 35 MNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGP 91
MNL+VPIYFS+GLTIQAN Y+KMLI WTSQK+K+TY NAFDFKNVH F+RS++DAPGP
Sbjct: 1 MNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTHNAFDFKNVHKFERSMLDAPGP 60
Query: 92 CVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPT-IELE-GTK 149
CVLFATPGML GGFSLEVFKHWAPSE NL+ LPGYC+AGT+G++L SG PT ++ + T+
Sbjct: 61 CVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLTSGKPTKVDTDPDTQ 120
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYD 209
IDVRCQIHQLAFS HTD KGIMDLVKFLSP+HV+LVHG+KPKM +LKERI SELGI C
Sbjct: 121 IDVRCQIHQLAFSAHTDSKGIMDLVKFLSPKHVMLVHGDKPKMVSLKERIDSELGIPCSH 180
Query: 210 PANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKD 269
PANNE + I ST YV A ASD F ++C+NPNF++ K S + S T L ++D
Sbjct: 181 PANNEIVTISSTQYVNAEASDTFTKNCLNPNFKFQKCSSMDTCNSTLIDRNLTPELQVED 240
Query: 270 ERVAEGILVLE--KSEKAKVVHQDELLLMLGEKRHEV 304
ERVA+G+LV+E ++KAK+VH+DE+LLML EK+HEV
Sbjct: 241 ERVADGVLVMENNNNKKAKIVHEDEILLMLDEKKHEV 277
>gi|147769550|emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera]
Length = 328
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 185/300 (61%), Positives = 232/300 (77%), Gaps = 4/300 (1%)
Query: 123 LPGYCLAGTIGNKLMSGNPT-IELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQ 180
L YCLAGTIG+KL +G PT I+L+ +I VRCQIHQL+FSPHTD KGIMDLVKFLSP+
Sbjct: 28 LERYCLAGTIGHKLTTGKPTKIDLDKDIQISVRCQIHQLSFSPHTDAKGIMDLVKFLSPK 87
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPN 240
HVILVHGEKPKMA+LK +I+S+LGI+CY PANN+++CIPST ++KA S FIRS +NPN
Sbjct: 88 HVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTCWLKADTSKTFIRSSLNPN 147
Query: 241 FQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEK 300
F+++K+ SE+KS SK T+ T L + DERVAEGIL++EKS+KAKVVHQ+ELLLM+G+
Sbjct: 148 FKFVKTISEDKSNLVSKETKATSXLQVHDERVAEGILIVEKSKKAKVVHQNELLLMIGKD 207
Query: 301 RHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQDF 360
+H+VQFAYCCPV + LE+ + ++ ++ S + L AKLS KL GNIQDF
Sbjct: 208 KHDVQFAYCCPVQIGNLERTKGMDFALSKNVVSTSDECSWLHQLFAKLSTKLG-GNIQDF 266
Query: 361 GEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAMENRDL 420
G+HLQV+S H+SVCLKD CPYR T+G + K FFCCTWS AD LA +IIS MEN DL
Sbjct: 267 GQHLQVDSIHISVCLKDICPYRTTDGPQ-KESAVFFCCTWSVADVNLAWEIISIMENLDL 325
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 182/317 (57%), Positives = 230/317 (72%), Gaps = 23/317 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCVA GGKVLIP FALGRAQELCILLD+YWER NL +PIY SAGLT+QAN+YYK+LIS
Sbjct: 218 VHKCVAAGGKVLIPVFALGRAQELCILLDEYWERTNLDMPIYISAGLTMQANVYYKLLIS 277
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QKVK+TY N FDFK+V F+RS IDAPGPCVLFATPGML+GG SLEVFKHWAPSE
Sbjct: 278 WTNQKVKDTYVTRNTFDFKHVIPFERSKIDAPGPCVLFATPGMLSGGLSLEVFKHWAPSE 337
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
N+I LPG+C+AGT+G+KLM G P I+L+ T +DVRCQI L+FS HTD KGI+DLV+
Sbjct: 338 SNMIILPGFCVAGTVGSKLMPGKPAKIDLDKRTTLDVRCQIQHLSFSAHTDAKGILDLVR 397
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
++P++V+LVHGEKPKMA LK++I S+L I CYDPAN E++ I +K G S F+ S
Sbjct: 398 HVAPRNVVLVHGEKPKMAILKKKISSDLCIPCYDPANLETVEITPRCPIKVGVSKQFLES 457
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
+ K + LP +++ + G +++E S + KV+H DE
Sbjct: 458 NLK-----------------KKDRQFQLP-RAREDILVNGFVIMEDSLRIKVIHPDEASS 499
Query: 296 MLGEKRHEVQFAYCCPV 312
+LG RH + F+ CP+
Sbjct: 500 VLGLTRHHMSFSCLCPI 516
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/312 (57%), Positives = 228/312 (73%), Gaps = 15/312 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV+ GGKVLIP ALGRAQELCILLD+YWERMNL+VPIYFSAGLT+Q+N YYK+LIS
Sbjct: 216 VHTCVSKGGKVLIPISALGRAQELCILLDEYWERMNLKVPIYFSAGLTMQSNAYYKLLIS 275
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+Q++K+TY NAFDFK+V FDR+ +D PGPC+LFATPGMLTGG SLEV KHWAP E
Sbjct: 276 WTNQRIKDTYVTRNAFDFKHVFPFDRTQLDGPGPCILFATPGMLTGGLSLEVLKHWAPVE 335
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
NL+ +PG+CLAGT+ KL SG PT +E++ T IDVRCQIH LAFS HTD KGIMDLV+
Sbjct: 336 QNLLIIPGFCLAGTVAQKLCSGKPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVR 395
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
+ P +VILVHGEK KM LK RI +ELGI C++PAN++ + +PS AS +
Sbjct: 396 QVEPHNVILVHGEKLKMDVLKARINNELGIPCHNPANHDVVEVPSHCLFNVEASKELVSL 455
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
M+ + +S E+ S++ +C G +P+ EGI++ S K K+VH E+
Sbjct: 456 SMSSYYSSTQSAMED-SMTSDRCKPG-IPV--------EGIVLTTNSSKIKLVHPFEVPS 505
Query: 296 MLGEKRHEVQFA 307
+LGE +H++ F+
Sbjct: 506 VLGEPKHDISFS 517
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/312 (56%), Positives = 227/312 (72%), Gaps = 15/312 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV+ GGKVLIP ALGRAQELCILLD+YWERMNL+VPIYFSAGLT+Q+N YYK+LIS
Sbjct: 221 VHTCVSKGGKVLIPISALGRAQELCILLDEYWERMNLKVPIYFSAGLTMQSNAYYKLLIS 280
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+Q++K+TY NAFDFK+V FDR+ +D GPC+LFATPGMLTGG SLEV KHWAP E
Sbjct: 281 WTNQRIKDTYVTRNAFDFKHVFPFDRTQLDGNGPCILFATPGMLTGGLSLEVLKHWAPVE 340
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
NL+ +PG+CLAGT+ KL SG PT +E++ T IDVRCQIH LAFS HTD KGIMDLV+
Sbjct: 341 QNLLIIPGFCLAGTVAQKLCSGKPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVR 400
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
+ P++VILVHGEK KM LK RI +ELG+ C++PAN++ + +PS AS +
Sbjct: 401 QVEPRNVILVHGEKLKMDVLKARINNELGMPCHNPANHDVVEVPSHCLFNVEASKELVSL 460
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
M+ + S E+ SV+ +C G +P+ EGI++ S K K+VH E+
Sbjct: 461 SMSSYYSSTHSAMED-SVTSDRCKPG-IPV--------EGIVLTTNSSKIKLVHPFEVPS 510
Query: 296 MLGEKRHEVQFA 307
+LGE +H++ F+
Sbjct: 511 VLGEPKHDISFS 522
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 209/318 (65%), Gaps = 19/318 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FALGRAQELCILL+ YW+RMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHECVERGGKVLIPVFALGRAQELCILLETYWDRMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK++ T+ N F+FK++ FDR+LID P P V+FATPGML GG SL++FK WAP +
Sbjct: 285 WTNQKIRRTFVQHNMFEFKHIKPFDRALIDNPNPMVVFATPGMLHGGLSLQIFKKWAPDD 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ LPGYC+AGT+GNK++SG T+ELE + IDV+ + ++FS H D KGIM L+K
Sbjct: 345 KNMVILPGYCVAGTVGNKILSGQRTVELENKQIIDVKLAVEYMSFSAHADAKGIMQLIKH 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L ++I+ E+G CY P N E++ I ++ + S
Sbjct: 405 AEPENVMLVHGEASKMNFLMQKIEQEIGTPCYMPKNGETVKIRASPKIAVDMS------- 457
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
F+ K + S+ S E P D R+ EG+++++ + ++V + L
Sbjct: 458 ----FELYKQNQPQISLK-SHIHENKKPRLDVDPRIIEGVIIMDDNS-TRLVDSKQALHE 511
Query: 297 LGEKRHEVQFAYCCPVNV 314
LG K H + F C ++V
Sbjct: 512 LGMKSHNLNF--CSTISV 527
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 203/311 (65%), Gaps = 25/311 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV GGKVLIP FALGRAQELCILL+ YW+RMN++VPIYFS GLT +AN YYK+ I+
Sbjct: 198 VHDCVEKGGKVLIPVFALGRAQELCILLESYWDRMNIKVPIYFSLGLTEKANHYYKLFIT 257
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K+T+ N F+FK++ FDR+ ID PGP V+FATPGML G SL++FK WAP+E
Sbjct: 258 WTSQKIKKTFVQRNMFEFKHIKPFDRAFIDNPGPMVVFATPGMLHAGLSLQIFKKWAPNE 317
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
+N++ +PGYC+AGT+G+K+++G +ELE +I DV+ + ++FS H D KGIM L+
Sbjct: 318 LNMVIMPGYCVAGTVGHKILNGARKLELENKQILDVKLSVQYMSFSAHADAKGIMQLISQ 377
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK +IQ E GI CY PAN ES+ I +TH + + ++
Sbjct: 378 CEPRNVMLVHGEAAKMDFLKNKIQQEFGIDCYKPANGESVTIETTHNIHVDIPLSLLKR- 436
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
SK G LP K RV G LV+ + + +++ + L
Sbjct: 437 -----------------EASKT--GLLPPDAKRPRVLHGALVM-RGNRLQIIDPSQALKE 476
Query: 297 LGEKRHEVQFA 307
+G + H ++F
Sbjct: 477 MGVEEHHLRFT 487
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 206/331 (62%), Gaps = 28/331 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV GGKVLIP FALGRAQELCILL+ YWERMNL VPIYFSAGLT +A YYK+ I
Sbjct: 224 VHSCVEKGGKVLIPVFALGRAQELCILLETYWERMNLTVPIYFSAGLTEKATNYYKLFIH 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K T+ N FDFK++ F+R L D PGP VLFATPGML G SLEVFK WAP+E
Sbjct: 284 WTNEKIKRTFVHRNMFDFKHISTFERGLADQPGPMVLFATPGMLHAGTSLEVFKKWAPNE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNP---TIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDL 173
NL+ +PGYC+ GT+GNKL +G ++L+ T ++VRC++ L+FS H D KGIM L
Sbjct: 344 KNLVIIPGYCVVGTVGNKLAAGRKGSFKVDLDSRTSLEVRCKVKNLSFSAHADAKGIMQL 403
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFI 233
+K P +VILVHGEK KM +LK+R+ E I C+DP N ++ I + V S A I
Sbjct: 404 IKMSQPANVILVHGEKGKMQSLKQRVIREFEIPCFDPPNGSTVTIKTARSVPVQISPALI 463
Query: 234 R--------SCMNPNFQYL---------KSGSEEKSVSGSKCTEGTLPLWIKDERVAEGI 276
R S + P G+ + + K TE + D + G+
Sbjct: 464 RAHAKRPLPSSLTPASSSSSSSSSIGIDSEGTTQPPLKRFKWTEPS----PADRALLTGV 519
Query: 277 LVLEKSEKAKVVHQDELLLMLGEKRHEVQFA 307
++++ S+ ++V ++E + L RH ++F+
Sbjct: 520 VLVKDSQAIELVDEEEAVERLDMPRHALKFS 550
>gi|332030612|gb|EGI70300.1| Integrator complex subunit 11 [Acromyrmex echinatior]
Length = 536
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 243/422 (57%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 166 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 225
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 226 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 285
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 286 SNMVIMPGFCVQGTVGHKVLNGTRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 345
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G+ CY+PAN E+ I +T V AS A ++
Sbjct: 346 CEPKNVMLVHGEFAKMEYLKEKIKQEFGVSCYNPANGETCIITTTSKVPVDASLALLK-- 403
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ +L+L + + +V DE+
Sbjct: 404 -----------AEAKRYSA-------LPPDPKRRRLLHSVLML-REDGVCLVDADEVAKA 444
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V +FT+T +RDP + L L+ L +LS
Sbjct: 445 AGITKHVV--------------RFTSTV------QVRDPGPAQATTLKLLQPLKERLSGW 484
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G ED ++ + +W+ D+ L I+ +
Sbjct: 485 TVQLTEGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLGSYILGFL 531
Query: 416 EN 417
+
Sbjct: 532 QT 533
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 165/422 (39%), Positives = 239/422 (56%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 224 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 284 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 344 SNMVIMPGFCVQGTVGHKVLNGTRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 403
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+++ILVHGE KM LKE+I+ E G CY+PAN E+ I +T V AS A ++
Sbjct: 404 CEPKNIILVHGEFAKMEYLKEKIKQEFGTNCYNPANGETCIITTTSKVPVDASLALLK-- 461
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ +L+L + + +V DE+
Sbjct: 462 -----------AEAKRYSA-------LPPDPKRRRLLHSVLML-REDGVCLVDADEVAKA 502
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V+F V RDP + L L+ L +LS
Sbjct: 503 AGITKHVVRFTSTVQV--------------------RDPGPAHATTLKLLQPLKERLSGW 542
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G ED ++ + +W+ D+ L I+ +
Sbjct: 543 TVQLTDGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLGSYILGFL 589
Query: 416 EN 417
+
Sbjct: 590 QT 591
>gi|383859338|ref|XP_003705152.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Megachile
rotundata]
Length = 494
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/421 (39%), Positives = 240/421 (57%), Gaps = 59/421 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 124 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 184 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G+ IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 244 ANMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G CY+PAN E+ I + V AS A ++
Sbjct: 304 CEPKNVMLVHGEFAKMEFLKEKIKQEFGTNCYNPANGETCVITTISKVPVDASLALLK-- 361
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ IL+L + + A +V DE+
Sbjct: 362 -----------AEAKRYSA-------LPPDPKRRRLLHSILML-REDGACLVDADEVTKA 402
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V+F V RDP + L L+ L +LS
Sbjct: 403 AGITKHVVRFTSTVQV--------------------RDPGPAHSTTLKLLQPLKERLSGW 442
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G ED ++ + +W+ D+ L I+ +
Sbjct: 443 TVQLTDGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLGSYILGFL 489
Query: 416 E 416
+
Sbjct: 490 Q 490
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 240/422 (56%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G+ IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 345 ANMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G CY+PAN E+ I + V AS A ++
Sbjct: 405 CEPKNVMLVHGEFAKMEFLKEKIKQEFGTNCYNPANGETCVITTISKVPVDASLALLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ IL+L + + A +V DE+
Sbjct: 463 -----------AEAKRYSA-------LPPDPKRRRLLHSILML-REDGACLVDADEVTKA 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V+F V RDP + L L+ L +LS
Sbjct: 504 AGITKHVVRFTSTVQV--------------------RDPGPAHSTTLKLLQPLKERLSGW 543
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G ED ++ + +W+ D+ L I+ +
Sbjct: 544 TVQLTDGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLGSYILGFL 590
Query: 416 EN 417
+
Sbjct: 591 QT 592
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 215/345 (62%), Gaps = 29/345 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+C+ GKVLIP FALGRAQELCILL+ YWERMNL+ PIYFS GLT +AN YYK+ IS
Sbjct: 226 LHECLERDGKVLIPVFALGRAQELCILLESYWERMNLKYPIYFSTGLTEKANHYYKLFIS 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K T+ N FDFK++ FDRS ID PGP ++FATPGML G SL++FK WA E
Sbjct: 286 WTNQKIKNTFIHRNMFDFKHIKAFDRSYIDQPGPMIVFATPGMLHAGLSLQIFKKWAEDE 345
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ +PGYC+ GTIG+K++SG IE++ +++R + ++FS H D KGIM L++
Sbjct: 346 KNMLIMPGYCVPGTIGHKVLSGTKKIEIDKKLVNIRLSVQYMSFSAHADAKGIMQLIQLA 405
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P++V+LVHGE KM L+++I E GI CY PAN E++ I +T + S + +
Sbjct: 406 EPKNVLLVHGEAAKMEFLRQKINEEFGIHCYMPANGETVAIATTPSISVNMSSLLFKRAL 465
Query: 238 NPNFQYLKSGSEEKSVSGSKCTE-GTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E+S+ +LP + V +G+LV++ E + + H+ E+
Sbjct: 466 ------------EESIGAPPSKRLCSLP----NSAVVDGLLVMKNEEVSLLTHK-EVSDE 508
Query: 297 LGEKRHEVQFAYCCPV--------NVDELEKFTTTSLTPTARMLR 333
+G RH+++F+ + N+ EL + L P +++L+
Sbjct: 509 IGLTRHKLKFSQTLTLDGHFLPDSNILELLTTSINKLVPDSKVLQ 553
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/422 (38%), Positives = 243/422 (57%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECIDKGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N F+FK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIKKTFVQRNMFEFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 345 ANMVIMPGFCVQGTVGHKVLNGTRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G+ CY+PAN E+ I +T V AS A ++
Sbjct: 405 CEPKNVMLVHGEFAKMEYLKEKIKQEFGVSCYNPANGETCVITTTSKVPVDASLALLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ +L+L + + +V DE+
Sbjct: 463 -----------AEAKRYSA-------LPPDPKRRRLLHSVLML-REDGVCLVDADEVAKA 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V +FT+T +RDP + L L+ L +LS
Sbjct: 504 AGITKHVV--------------RFTSTV------QVRDPGPAHATTLKLLQPLKERLSGW 543
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G +D ++ + +W+ D+ L I+ +
Sbjct: 544 TVQLTDGSISVESVLVKV-----------EGDDDDQKSVY--VSWTNQDEDLGSYILGFL 590
Query: 416 EN 417
+
Sbjct: 591 QT 592
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 176/239 (73%), Gaps = 6/239 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+CV GGKVLIP FALGRAQELCIL++ YWER+ L VP+YFSAGLT +AN YYK+ I+
Sbjct: 224 IHECVEQGGKVLIPVFALGRAQELCILVETYWERLGLTVPVYFSAGLTAKANNYYKLFIT 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K T+ N F+FK++ FDR+ +D PGP VLFATPGML G SL+ F+ WAP++
Sbjct: 284 WTNQKIKRTFVERNMFEFKHIKPFDRAFLDNPGPMVLFATPGMLHAGMSLDAFRKWAPND 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG---TKIDVRCQIHQLAFSPHTDGKGIMDLV 174
N++ LPGYC+AGT+GNK+++G+ IE+ T IDVR + L+FS H D KGI+ L+
Sbjct: 344 KNMVILPGYCVAGTVGNKVLAGHKQIEMPDRARTVIDVRLSVQNLSFSAHADAKGIVQLI 403
Query: 175 KFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFI 233
+ P++V+LVHGEK KMA LK +I SE+GI C+DPAN ++ I + H + ++
Sbjct: 404 RHAEPRNVMLVHGEKAKMAFLKAKIISEIGIPCFDPANGATVTIETAHPISVSVPPNYV 462
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/422 (38%), Positives = 239/422 (56%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G+ IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 345 ANMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G CY+PAN E+ I + V AS A ++
Sbjct: 405 CEPKNVMLVHGEFAKMEFLKEKIKQEFGTNCYNPANGETCVITTISKVPVDASLALLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ +L+L + + +V DE+
Sbjct: 463 -----------AEAKKYSA-------LPPDPKRRRLLHSVLML-REDGVCLVDADEVTKA 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V+F V RDP + L L+ L +LS
Sbjct: 504 AGITKHVVRFTSTVQV--------------------RDPGPAHSTTLKLLQPLKERLSGW 543
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G ED ++ + +W+ D+ L I+ +
Sbjct: 544 TVQLTDGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLGSYILGFL 590
Query: 416 EN 417
+
Sbjct: 591 QT 592
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/257 (52%), Positives = 183/257 (71%), Gaps = 10/257 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FALGR QELCIL+D YWE+MNL VPIYFS GL +AN YYK+ I+
Sbjct: 224 VHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLNVPIYFSEGLAEKANFYYKLFIT 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FDR L DAPGP VLFATPGML G SLEVFK WAP+E
Sbjct: 284 WTNQKIKQTFVKRNMFDFKHIKPFDRHLADAPGPMVLFATPGMLHAGASLEVFKKWAPNE 343
Query: 118 MNLITLPGYCLAGTIGNKLMS---GNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+N+ +PGYC+ GT+GNKL+S G +E++ T ++V+C+IH L+FS H D KGIM L
Sbjct: 344 LNMTIIPGYCVVGTVGNKLLSNAGGPQMVEIDKKTTLEVKCKIHNLSFSAHADAKGIMQL 403
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFI 233
+K P++V+LVHGEK KM L ++I + G+ CY PAN ++ I S+ + S +
Sbjct: 404 IKMSQPKNVLLVHGEKEKMRYLSDKISKDFGVPCYFPANGVTVNIESSKLIPIDISSKLL 463
Query: 234 RSCMNPNFQYLKSGSEE 250
+ + +Y ++ S++
Sbjct: 464 KRQI---LEYSQANSKQ 477
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 200/311 (64%), Gaps = 26/311 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ YW+RMNL+VPIYFSAGLT +A YYK+ I+
Sbjct: 226 VHERVEDGGKVLIPVFALGRAQELCILLESYWDRMNLKVPIYFSAGLTNKATEYYKLFIT 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ F+RS ID PGP V+FATPGML GG SLE+FK W +E
Sbjct: 286 WTNQKIKDTFVERNMFDFKHIKEFNRSYIDNPGPMVVFATPGMLHGGLSLEIFKRWCTNE 345
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N+I +PGYC+AGT+GNK++SG IEL+ G ++++ Q+ ++FS H D KGIM L++
Sbjct: 346 KNMIIMPGYCVAGTVGNKILSGMRKIELKPGQVVEIKMQVEYMSFSAHADAKGIMQLIRM 405
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM LK +I EL + C+ PAN E++ I + + AS +R
Sbjct: 406 CEPSNVMLVHGEAGKMDFLKSKINQELHLPCFKPANGETVVITTNPPITVDASTNLLRK- 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
N + L + K V K G VL K + KVV +E +
Sbjct: 465 ---NREILGTSYNPKRV---KTLHGA---------------VLMKGNEIKVVDGEEAVEE 503
Query: 297 LGEKRHEVQFA 307
L K+HEV+F
Sbjct: 504 LQLKKHEVRFT 514
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 237/423 (56%), Gaps = 61/423 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VPIYF+ GLT +AN YYKM I+
Sbjct: 202 VHECIEKGGKVLIPVFALGRAQELCILLETYWERMNLKVPIYFAVGLTEKANNYYKMFIT 261
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDRS ID P V+FATPGML G SL++FK WAP+E
Sbjct: 262 WTNQKIRKTFVQRNMFDFKHIKPFDRSYIDQAWPMVVFATPGMLHAGLSLQIFKKWAPNE 321
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+AGT+G+K++SG IE E +I DV+ + ++FS H D KGIM L+++
Sbjct: 322 NNMVIMPGFCVAGTVGHKILSGQKKIEFENRQIVDVKMSVQYMSFSAHADAKGIMQLIQY 381
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+++I+ E I CY PAN E+ I H + S ++
Sbjct: 382 CEPKNVLLVHGEAAKMEFLRDKIKQEFHINCYMPANGETCTIDIPHKIPIDISLNLLK-- 439
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
S S+ LP + R+ G+LV K +++ ++
Sbjct: 440 -----------------SESQAYNALLPN-LSKSRILHGVLV-NKEHSLCLMNVEDACKE 480
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARML--RDPNKSSLIRLLVAKLSRKLSE 354
G RH ++F T T RM R PNK + L + K KL
Sbjct: 481 AGVTRHIIRF-------------------TSTVRMEDPRPPNKIAEKLLKIVK--EKLKN 519
Query: 355 GNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISA 414
+IQ + VE+ + V G ED + + +W+ D+ L I++
Sbjct: 520 YSIQFTDSSISVETVLIKV-----------EGDEDDRKCVY--VSWTNQDEDLGSYILNL 566
Query: 415 MEN 417
++N
Sbjct: 567 LQN 569
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/422 (38%), Positives = 238/422 (56%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G+ IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 345 ANMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G CY+PAN E+ I + V AS A ++
Sbjct: 405 CEPKNVMLVHGEFAKMEFLKEKIKQEFGTNCYNPANGETCVITTIAKVPVDASLALLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
SE K S LP K R+ +L+L + + +V DE+
Sbjct: 463 -----------SEAKRYSA-------LPPDPKRRRLLHSVLML-REDGVCLVDADEVTKA 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V+F V RDP + L L+ L +L
Sbjct: 504 AGITKHIVRFTSTVQV--------------------RDPGPAHSTTLKLLQPLKERLPGW 543
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + VES + V G ED ++ + +W+ D+ L I+ +
Sbjct: 544 TVQLTDGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLGSYILGFL 590
Query: 416 EN 417
+
Sbjct: 591 QT 592
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 177/237 (74%), Gaps = 13/237 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V +CV GGKVLIP FALGRAQELC+LLD +WER L+VPIYFSAGLT +AN+YYKM IS
Sbjct: 226 VSECVRNGGKVLIPVFALGRAQELCLLLDAFWERTGLKVPIYFSAGLTEKANLYYKMYIS 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDF+++ FDR+ ID PGP VLFATPGML GG S+EVFK WAPS+
Sbjct: 286 WTNQKIKDTFVKRNVFDFQHIQPFDRAFIDRPGPMVLFATPGMLHGGLSMEVFKKWAPSD 345
Query: 118 MNLITLPGYCLAGTIGNKLMS--GNPTI-----ELEGTKIDVRCQIHQLAFSPHTDGKGI 170
NL+ +PGYC+AGT+G+K++S G P I + G K+ VRC+I L+FS H D KGI
Sbjct: 346 KNLVIMPGYCVAGTLGHKVLSNGGKPQIIDMPRDEGGGKLHVRCKIKHLSFSAHADAKGI 405
Query: 171 MDLVK---FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYV 224
M L+K + P +V+LVHGE+ KM LKERI++E G+ CYDPAN + I + H V
Sbjct: 406 MTLIKQAISVDPVNVMLVHGERHKMEALKERIKTEFGLPCYDPANGATTYITTFHGV 462
>gi|296206479|ref|XP_002750226.1| PREDICTED: integrator complex subunit 11 isoform 2 [Callithrix
jacchus]
Length = 499
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 242/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSLSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSILKDHYVQHLPDGS 449
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE S+ ++ T P + P T +W+ D++L + S ++
Sbjct: 450 V-------TVE----SILIQATAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 491
Query: 417 N 417
Sbjct: 492 K 492
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 238/413 (57%), Gaps = 59/413 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G+ IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 345 ANMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E G CY+PAN E+ I + V AS A ++
Sbjct: 405 CEPKNVMLVHGEFAKMEFLKEKIKQEFGTNCYNPANGETCVITTISKVPVDASLALLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E K S LP K R+ +L+L + + +V DE+
Sbjct: 463 -----------AEAKKYSA-------LPPDPKRRRLLHSVLML-REDGVCLVDADEVTKA 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRL-LVAKLSRKLSEG 355
G +H V +FT+T +RDP + L L+ L +LS
Sbjct: 504 AGITKHVV--------------RFTSTV------QVRDPGPAHSTTLKLLQPLKERLSGW 543
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLA 408
+Q + VES + V G ED ++ + +W+ D+ L
Sbjct: 544 TVQLTDGSISVESVLVKV-----------EGDEDDQKSVY--VSWTNQDEDLG 583
>gi|34783058|gb|AAH00675.2| CPSF3L protein, partial [Homo sapiens]
Length = 473
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 98 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 157
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 158 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 217
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 218 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 277
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 278 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 337
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 338 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 374
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 375 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 423
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 424 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 465
Query: 417 N 417
Sbjct: 466 K 466
>gi|119576648|gb|EAW56244.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_j
[Homo sapiens]
Length = 476
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 101 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 160
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 161 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 220
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 221 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 280
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 281 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 340
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 341 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 377
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 378 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 426
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 427 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 468
Query: 417 N 417
Sbjct: 469 K 469
>gi|39645207|gb|AAH13904.2| CPSF3L protein, partial [Homo sapiens]
Length = 429
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 54 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 113
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 114 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 173
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 174 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 233
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 234 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 293
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 294 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 330
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 331 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 379
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 380 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 421
Query: 417 N 417
Sbjct: 422 K 422
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 242/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSLSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSILKDHYVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE S+ ++ T P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SILIQATAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 161/422 (38%), Positives = 239/422 (56%), Gaps = 59/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+ P+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECIDKGGKVLIPVFALGRAQELCILLETYWERMNLKAPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD+S ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIKKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 345 ANMVIMPGFCVQGTVGHKVLNGAKRIEFENRQIVEVKMTVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E GI CY+PAN E+ I + V AS A ++
Sbjct: 405 CEPKNVMLVHGEFAKMEYLKDKIKQEFGINCYNPANGETCIITTKSKVPIDASLALLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
SE K S LP K R+ +L+ + + ++ +E+
Sbjct: 463 -----------SEAKKYSA-------LPPDPKRRRLLHSVLMC-REDGICLLDSEEVSKA 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKS-SLIRLLVAKLSRKLSEG 355
G RH V+F +A +RDP + R L+ L +L
Sbjct: 504 AGVTRHIVRFT--------------------SAIQVRDPGPAGGTARKLLLPLQERLGGW 543
Query: 356 NIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
I+ + VE+ + + G ED+ +T + +W+ D+ L I+ +
Sbjct: 544 GIEMIDSSIMVETVVVKI-----------EGDEDEQKTVY--VSWTNQDEDLGSYILGFL 590
Query: 416 EN 417
+
Sbjct: 591 QT 592
>gi|403297740|ref|XP_003939710.1| PREDICTED: integrator complex subunit 11 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 499
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 211/329 (64%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVEHGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPENVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSLSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRKEQETAL 427
>gi|397476280|ref|XP_003809535.1| PREDICTED: integrator complex subunit 11 isoform 3 [Pan paniscus]
Length = 499
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 449
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 450 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 491
Query: 417 N 417
Sbjct: 492 K 492
>gi|374253828|ref|NP_001243392.1| integrator complex subunit 11 isoform 5 [Homo sapiens]
gi|119576639|gb|EAW56235.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
gi|119576644|gb|EAW56240.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
Length = 499
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 449
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 450 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 491
Query: 417 N 417
Sbjct: 492 K 492
>gi|119576647|gb|EAW56243.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_i
[Homo sapiens]
Length = 502
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 127 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 186
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 187 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 246
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 247 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 306
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 307 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 366
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 367 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 403
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 404 LGLAEHQLRF--TCRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 452
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 453 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 494
Query: 417 N 417
Sbjct: 495 K 495
>gi|374253826|ref|NP_001243391.1| integrator complex subunit 11 isoform 4 [Homo sapiens]
Length = 502
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 127 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 186
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 187 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 246
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 247 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 306
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 307 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 366
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 367 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 403
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 404 LGLAEHQLRF--TCRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 452
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 453 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 494
Query: 417 N 417
Sbjct: 495 K 495
>gi|322790916|gb|EFZ15582.1| hypothetical protein SINV_14424 [Solenopsis invicta]
Length = 277
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 180/239 (75%), Gaps = 4/239 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+VP+YF+ GLT +AN YYKM I+
Sbjct: 2 VHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFIT 61
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 62 WTNQKIKKTFVQRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 121
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G+ IE E +I +V+ + ++FS H D KGIM L+++
Sbjct: 122 SNMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQY 181
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
P++V+LVHGE KM LKE+I+ E G+ CY+PAN E+ I +T V AS A +++
Sbjct: 182 CEPKNVMLVHGEFAKMEYLKEKIKQEFGVNCYNPANGETCIITTTSKVPVDASLALLKT 240
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/420 (38%), Positives = 240/420 (57%), Gaps = 53/420 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIPAFALGRAQELCILL+ YWERMNL+ PIYF+AGLT +A YYKM I+
Sbjct: 225 VHDCIERGGKVLIPAFALGRAQELCILLETYWERMNLKCPIYFAAGLTEKATNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK++ T+ N FDFK++ FDR+ ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 285 WTNQKIRNTFVDHNMFDFKHIKPFDRAYIDNPGPMVVFATPGMLHAGLSLQIFKKWAPFE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC++GT+G K+++G +E+E G IDV+ + L+FS H D KGIM L++
Sbjct: 345 ENMVIMPGYCVSGTVGAKILNGARRVEIEKGNFIDVKLSVEYLSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK +I+ E I CY PAN E+ I ++
Sbjct: 405 CEPKNVLLVHGEGDKMKFLKGKIEEEFKIPCYMPANGETTLISVPEHI-----------V 453
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
++ + LK + + K K +++ IL+ + K+V ++ L
Sbjct: 454 LDVDLPLLKRALPQAEIVSEK----------KSKQIHAAILMYDNV--MKLVEPEDALNE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG + H+++F TT S+ T + ++ + LV L + +
Sbjct: 502 LGVREHQIRFT-------------TTISIPETFQ-----GSTAKLAELVQDLVKDKLPSD 543
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
Q+ + LQ S L + R+ NG ED ++ C +W+ D+ L +++S ++
Sbjct: 544 DQETMQMLQDGSLSLGSAI-----VRV-NGFEDDMKSV--CVSWANEDEDLGTQLVSLVQ 595
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 145/313 (46%), Positives = 199/313 (63%), Gaps = 24/313 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 224 VHDCVDRGGKVLIPVFALGRAQELCILLETYWERMNLKAPIYFAVGLTEKANNYYKMFIT 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FD+S D PGP V+FATPGML G SL++FK WAP+E
Sbjct: 284 WTNQKIRKTFVQRNMFEFKHIRPFDKSYADTPGPMVVFATPGMLHAGLSLQLFKKWAPNE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC++GT+G K++SG +E+E + I+V+ + ++FS H D KGIM L+++
Sbjct: 344 NNMLIMPGYCVSGTVGAKVLSGAKKVEIENRQVIEVKMSVQYMSFSAHADAKGIMQLIQY 403
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
PQ+V+LVHGE KM LK++IQ E GI CY PAN ES IP V S + ++
Sbjct: 404 CEPQNVLLVHGEGVKMEFLKQKIQQEYGIDCYMPANGESAYIPCKPVVPVDVSLSLLKKE 463
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M Y G+ + K G+LV+ K K++ ++
Sbjct: 464 MA---LYDTVGAPDP----------------KRPCRMHGVLVM-KDNVLKLMEPEQAFGE 503
Query: 297 LGEKRHEVQFAYC 309
LG RH ++F C
Sbjct: 504 LGLNRHSIRFTSC 516
>gi|395840793|ref|XP_003793236.1| PREDICTED: integrator complex subunit 11 isoform 2 [Otolemur
garnettii]
Length = 499
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
PQ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPQSVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVALPTSPSIPGGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K +++ ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLISSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T++ S L +L + L +G+
Sbjct: 401 LGLAEHQLRFT--CRVHLHDSRKEQETAMRVY---------SHLKSILKDHCVQHLPDGS 449
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE S+ ++ P + P T +W+ D++L + S ++
Sbjct: 450 V-------TVE----SILIQAAAP-------SEDPATKVLLVSWTYQDEELGSYLTSLLK 491
Query: 417 N 417
Sbjct: 492 K 492
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/313 (46%), Positives = 199/313 (63%), Gaps = 24/313 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 224 VHDCVDRGGKVLIPVFALGRAQELCILLETYWERMNLKAPIYFAVGLTEKANNYYKMFIT 283
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FD+S D PGP V+FATPGML G SL++FK WAP+E
Sbjct: 284 WTNQKIRKTFVQRNMFEFKHIRPFDKSYADTPGPMVVFATPGMLHAGLSLQLFKKWAPNE 343
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC++GT+G K++SG +E+E + I+V+ + ++FS H D KGIM L+++
Sbjct: 344 NNMLIMPGYCVSGTVGAKVLSGAKKVEIENRQVIEVKMSVQYMSFSAHADAKGIMQLIQY 403
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
PQ+V+LVHGE KM LK++IQ E GI CY PAN ES IP V S + ++
Sbjct: 404 CEPQNVLLVHGEGVKMEFLKQKIQQEYGIDCYMPANGESAYIPCKPVVPVDVSLSLLKKE 463
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M Y G+ + K G+LV+ K K++ ++
Sbjct: 464 MA---LYDTVGAPDP----------------KRPCRMHGVLVM-KDNVLKLMEPEQAFGE 503
Query: 297 LGEKRHEVQFAYC 309
LG RH ++F C
Sbjct: 504 LGLNRHSIRFTSC 516
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 196 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 255
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 256 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 315
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 316 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 375
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 376 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 435
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 436 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 472
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 473 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 521
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 522 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 563
Query: 417 N 417
Sbjct: 564 K 564
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|10433243|dbj|BAB13943.1| unnamed protein product [Homo sapiens]
Length = 499
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 240/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLKTFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 449
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 450 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 491
Query: 417 N 417
Sbjct: 492 K 492
>gi|426327396|ref|XP_004024504.1| PREDICTED: integrator complex subunit 11 isoform 4 [Gorilla gorilla
gorilla]
Length = 499
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRKEQETAL 427
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 203 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 262
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 263 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 322
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 323 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 382
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 383 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 442
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 443 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 479
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 480 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 528
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 529 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 570
Query: 417 N 417
Sbjct: 571 K 571
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 211/329 (64%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVEHGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSLSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAL 528
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
PQ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPQSVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVALPTSPSIPGGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K +++ ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLISSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T++ S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDSRKEQETAMRVY---------SHLKSILKDHCVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE S+ ++ P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SILIQAAAP-------SEDPATKVLLVSWTYQDEELGSYLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|426327398|ref|XP_004024505.1| PREDICTED: integrator complex subunit 11 isoform 5 [Gorilla gorilla
gorilla]
Length = 502
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 127 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 186
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 187 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 246
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 247 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 306
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 307 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 366
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 367 M---------------------AQGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKE 403
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 404 LGLAEHQLRF--TCRVHLHDTRKEQETAL 430
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G LV+ K ++V ++ L
Sbjct: 465 M---------------------VQGLLP-EAKKPRLLHGTLVM-KDSSFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRKEQETAL 528
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 231 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 290
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 291 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 351 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 411 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 470
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 471 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 507
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 508 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 556
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 557 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 598
Query: 417 N 417
Sbjct: 599 K 599
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 231 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 290
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 291 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 351 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 411 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 470
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 471 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 507
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 508 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 556
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 557 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 598
Query: 417 N 417
Sbjct: 599 K 599
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAL 528
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAL 528
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 231 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 290
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 291 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 351 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 411 AEPESVLLVHGEAKKMEFLKQKIEQELRVDCYMPANGETVTLPTSPSIPVGISLGLLKRE 470
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 471 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 507
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 508 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 556
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 557 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 598
Query: 417 N 417
Sbjct: 599 K 599
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAL 528
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 196 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 255
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 256 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 315
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 316 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 375
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 376 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 435
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 436 M---------------------AQGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKE 472
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 473 LGLAEHQLRFT--CRVHLHDTRKEQETAL 499
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------VQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRKEQETAL 528
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/228 (58%), Positives = 169/228 (74%), Gaps = 7/228 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FALGR QELCIL+D YWE+M L VPIYFS GL +AN YYK+ I
Sbjct: 251 VHECVEKGGKVLIPVFALGRVQELCILIDTYWEQMGLSVPIYFSEGLAEKANFYYKLFIG 310
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K+T+ N FDFK++ FDR L+DAPGP VLFATPGML G SLEVFK WAPSE
Sbjct: 311 WTNQKIKQTFVKRNMFDFKHIKPFDRMLVDAPGPMVLFATPGMLHAGASLEVFKKWAPSE 370
Query: 118 MNLITLPGYCLAGTIGNKLM---SGNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+N+ +PGYC+ GT+GNKL+ SG +E++ T ++V+C+IH L+FS H D KGIM L
Sbjct: 371 LNMTIIPGYCVVGTVGNKLLSNASGPQMVEIDKKTTLEVKCKIHNLSFSAHADAKGIMQL 430
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
+K P++V+LVHGEK KM L ++I + I CY PAN ++ I S+
Sbjct: 431 IKMSQPKNVLLVHGEKEKMRFLSDKISKDFNIPCYFPANGVTVNIESS 478
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 241/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G++++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHEILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 551 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 592
Query: 417 N 417
Sbjct: 593 K 593
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------VQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRKEQETAL 528
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------VQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRKEQETAL 528
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 226 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 286 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 345
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 346 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 405
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 406 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 465
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 466 M---------------------VQGLLP-EAKKPRLLHGTLIM-KDNNFRLVSSEQALKE 502
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 503 LGLAEHQLRFT--CRVHLQDTRKEQETAL 529
>gi|402852595|ref|XP_003891003.1| PREDICTED: integrator complex subunit 11 isoform 2 [Papio anubis]
Length = 499
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 124 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 183
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 184 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 243
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 244 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 303
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 304 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 363
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 364 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 400
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 401 LGLAEHQLRFT--CRVHLHDTRK 421
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQGNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------VQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRKEQETAL 528
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 231 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 290
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 291 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 351 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 411 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 470
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 471 M---------------------AQGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKE 507
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 508 LGLAEHQLRFT--CRVHLHDTRKEQETAL 534
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 210/328 (64%), Gaps = 29/328 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 226 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 286 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 345
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 346 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 405
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 406 AEPENVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 465
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 466 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 502
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTS 324
LG H+++F C V++ + K T+
Sbjct: 503 LGLAEHQLRFT--CRVHLHDTRKEQETA 528
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------VQGLLP-EAKKPRLLHGTLIM-KDNNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRKEQETAL 528
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 198/310 (63%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ P+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD+ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDKGYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++ G +E E + +DV+ + ++FS H D KGIM L++F
Sbjct: 345 NNMVIMPGYCVQGTVGHKILGGAKKVEFENRQVVDVKMSVEYMSFSAHADAKGIMQLIQF 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E I+CY PAN E+ I + + S + ++
Sbjct: 405 CEPRNVMLVHGEAVKMEFLKEKIREEFKIECYTPANGETCTISTPIKIPVETSLSILK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E K + P K R+ GILV+ K K ++ DE+
Sbjct: 463 -----------DEVKKYNAQ-------PPDPKRRRIIHGILVM-KDNKISLMSIDEIFNE 503
Query: 297 LGEKRHEVQF 306
G RH ++F
Sbjct: 504 AGIDRHVIRF 513
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 240/421 (57%), Gaps = 56/421 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 231 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 290
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 291 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 351 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY P N E++ +P++ + G S ++
Sbjct: 411 AEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPVNGETVTLPTSPSIPVGISLGLLKRE 470
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 471 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 507
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T+L S L +L + L +G+
Sbjct: 508 LGLAEHQLRFT--CRVHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGS 556
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VE SV L+ P + P T +W+ D++L + S ++
Sbjct: 557 V-------TVE----SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELGSFLTSLLK 598
Query: 417 N 417
Sbjct: 599 K 599
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 210/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 344 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 403
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 404 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 463
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM L+
Sbjct: 464 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLIGQ 523
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+HV+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 524 AEPEHVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 583
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ +G L++ K ++V ++ L
Sbjct: 584 M---------------------AQGMLPD-AKRPRLLQGTLIM-KDSNFRLVSSEQALKE 620
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T +
Sbjct: 621 LGLAEHQLRFT--CRVHLHDARKEQETVM 647
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 204 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 263
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 264 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 323
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 324 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 383
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 384 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 443
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 444 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 480
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 481 LGLAEHQLRFT--CRVHLHDTRK 501
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 208/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 298 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 357
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 358 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 417
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 418 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 477
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 478 AEPESVLLVHGEAKKMGFLRQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 537
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 538 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 574
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 575 LGLAEHQLRFT--CRVHLQDTRK 595
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 209/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKET---YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTSVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAL 528
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 209/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +VR Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVRMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T++
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAM 528
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRK 522
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 213 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 272
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 273 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 332
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 333 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 392
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 393 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 452
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 453 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 489
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 490 LGLAEHQLRFT--CRVHLHDTRK 510
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 198/310 (63%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFAVGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD+ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDKGYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++ G +E E + ++V+ + ++FS H D KGIM L+++
Sbjct: 345 NNMVIMPGYCVQGTVGHKILGGAKKVEFENRQVVEVKMSVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E I+CY PAN E+ I + + AS ++
Sbjct: 405 CEPKNVMLVHGEAVKMEFLKEKIKEEFHIECYTPANGETCVINTPIKIPVEASTTILK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E K + P K RV G+L++ K K ++ DE+
Sbjct: 463 -----------EEAKKYNAE-------PPDPKRRRVIHGLLIM-KDNKISLMSIDEIFSE 503
Query: 297 LGEKRHEVQF 306
G RH ++F
Sbjct: 504 CGINRHVIRF 513
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM L+++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKQE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSSFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 502 LGLAEHQLRFT--CRVHLQDTRK 522
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 227/371 (61%), Gaps = 31/371 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ +WERMN++ PIYFS GLT +AN YY++ I+
Sbjct: 218 VHETIEKGGKVLIPVFALGRAQELCILLETFWERMNIKAPIYFSTGLTEKANNYYRLFIT 277
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS ID PGP V+FATPGML G SL++FK WAP
Sbjct: 278 WTNQKIRKTFVKRNMFEFKHIKAFDRSYIDNPGPMVVFATPGMLHAGLSLQIFKKWAPDS 337
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K+++G IE E K+ +VR + ++FS H D +GIM L+++
Sbjct: 338 KNMVIMPGYCVAGTVGHKILNGIRKIEFENKKVLEVRMTVEYMSFSAHADAQGIMQLIRY 397
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE+ KM L ++I E G++C+ PAN E++ I + + AS ++
Sbjct: 398 CEPRNVMLVHGEEQKMDFLSKKITQEFGVQCFFPANGETVTIETNPNIPVDASLNLLK-- 455
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E S++G C LP K RV G L++ K ++V + +
Sbjct: 456 ------------REASLTGL-C---RLPD-PKRPRVLHGALIM-KENSLRLVSPSQAMRE 497
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL-TPTARMLRD------PNKSSLIRLLVAKLS 349
LG K HE++F ++ + + T L T L+D P+ S +I ++ K+S
Sbjct: 498 LGLKEHEIRFTSTVTIHDPQPTQATVERLYTHLKGTLKDHSIQHMPDGSIMIDSVLIKVS 557
Query: 350 RKLSEGNIQDF 360
E +DF
Sbjct: 558 GSSEEEETKDF 568
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/423 (37%), Positives = 236/423 (55%), Gaps = 59/423 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CV GGKVLIP FALGRAQELCILL+ +W+RMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 198 VHDCVEKGGKVLIPVFALGRAQELCILLETFWDRMNLKAPIYFSTGLTEKANHYYKLFIT 257
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+F+++ FDRS D PGP V+FATPGML GG SL VFK WA +E
Sbjct: 258 WTNQKIRKTFVQRNMFEFRHIKPFDRSYTDNPGPMVVFATPGMLHGGLSLHVFKKWASNE 317
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K+++G IELE + IDV+ + ++FS H D KGIM L+K
Sbjct: 318 KNMVIMPGYCVAGTVGHKILNGQRKIELENRQTIDVKLSVQYMSFSAHADAKGIMQLIKQ 377
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I + G++C+ P N ES+ I + + A S ++
Sbjct: 378 CEPKNVMLVHGEAKKMDFLKQKIVQQFGVQCFMPPNGESVVIETHSNIPADISVNLLK-- 435
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+++G T T P K G LV+ + + +V + L
Sbjct: 436 ------------RNAALAGFSSTLSTDP---KKLCTMHGALVMHDN-RITIVEASQALKE 479
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
HE++F +T SL P M +L L ++ S N
Sbjct: 480 CSASEHEIRFT-------------STVSLPPACSM----------DVLYKTLKQRFSGHN 516
Query: 357 IQDFGE-HLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
+Q + LQV+S + + +G D+ +W D++L +++ +
Sbjct: 517 VQHASDGSLQVDSVLVKI-----------SGESDEGTDML--VSWPYQDEELGSSLLTML 563
Query: 416 ENR 418
+NR
Sbjct: 564 QNR 566
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 178/251 (70%), Gaps = 4/251 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCIL+D YW+RM L+VP+YF+AGLT +AN YYKM I+
Sbjct: 228 VHECIDRGGKVLIPIFALGRAQELCILIDTYWDRMGLKVPVYFAAGLTEKANSYYKMFIT 287
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QKV++T+ N FDFK++ FD++ + PGP V+FATPGML G SL +FK WAP E
Sbjct: 288 WTNQKVRQTFVQRNMFDFKHIKPFDKTYMHNPGPMVVFATPGMLHAGLSLNIFKKWAPDE 347
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC++GT+GNK++SG+ IE E K IDV+ + L+FS H DGKGI+ L+K
Sbjct: 348 KNMLIVPGYCVSGTVGNKVLSGSKKIEAEPNKFIDVKMSVEYLSFSAHADGKGIIQLIKN 407
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
PQ+V+LVHGE+ KM L+ +I E I CY PAN E++ I + + S ++
Sbjct: 408 CEPQNVLLVHGEEEKMKFLRAKIMQEFNINCYMPANGETVEIETANIHTFNMSTKLVKEI 467
Query: 237 MNPNFQYLKSG 247
++ L +G
Sbjct: 468 LDDQSNNLGNG 478
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 209/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFTDNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM K++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFQKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T+L
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRKEQETAL 528
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 199/311 (63%), Gaps = 25/311 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ P+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD+ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDKGYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++ G +E E + ++V+ + ++FS H D KGIM L++F
Sbjct: 345 NNMVIMPGYCVQGTVGHKILGGAKKVEFENRQVVEVKMSVEYMSFSAHADAKGIMQLIQF 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LKE+I+ E I+CY PAN E+ I + + S + ++
Sbjct: 405 CEPRNVMLVHGEAVKMEFLKEKIREEFRIECYTPANGETCTISTPIKIPVETSLSILK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E K + P K R+ GILV+ K K ++ DE+
Sbjct: 463 -----------DEVKKYNAQ-------PPDPKRRRIIHGILVM-KDNKISLMSIDEIFNE 503
Query: 297 LGEKRHEVQFA 307
G RH +++A
Sbjct: 504 AGIDRHVIRYA 514
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 234/434 (53%), Gaps = 82/434 (18%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP +K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DVKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V+ L DP K + + V
Sbjct: 502 LGLAEHQLRFT--CRVH------------------LHDPRKEQEMAVRVYS--------- 532
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGL-------------EDKPRTAFFCCTWSAA 403
HL LKD C + +G + P T +W+
Sbjct: 533 -------------HLKSVLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 404 DDKLARKIISAMEN 417
D++L + S ++
Sbjct: 580 DEELGSYLTSLLKK 593
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/422 (38%), Positives = 238/422 (56%), Gaps = 55/422 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH V GGKVLIP FALGRAQELCILL+ YW+RMNL+VPIYFS GLT +AN YYKM I+
Sbjct: 225 VHDAVDKGGKVLIPVFALGRAQELCILLETYWDRMNLKVPIYFSMGLTEKANHYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K T+ N FDFK++ FD+ D PGP V+FATPGML GG SL++FK W E
Sbjct: 285 WTNQKIKNTFVQRNMFDFKHIKPFDKVYADNPGPMVVFATPGMLHGGLSLQIFKKWCGGE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC++GTIG K+++G IE+E + I+V+ + ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVSGTIGWKILNGQRKIEMENKQIIEVKMSVQYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM LK +I E GI C++PAN E++ I + H + S ++
Sbjct: 405 CQPSNVMLVHGEAEKMEFLKTKINEEFGISCFNPANGETVSIEARHGIPVDISLNLLKR- 463
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
KS SG LP K R+ G LV+ + + K+V E +
Sbjct: 464 -----------EPAKSASG-------LP-EPKRSRLLHGALVM-REQAMKLVEPREAMKE 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+V+F T++LT T N S VA+++ KL +
Sbjct: 504 LGLNEHDVRF---------------TSTLTIT------DNDS------VAEMAEKLMKIF 536
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ +H +S S+ + D+ +++ E+ +WS D++L ++ ++
Sbjct: 537 RESAQQHSLQQSSDGSISIADSVLVKVSESDENDKSVLL---SWSLQDEELGSHLLKIIK 593
Query: 417 NR 418
+
Sbjct: 594 TK 595
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 233/434 (53%), Gaps = 82/434 (18%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G LV+ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLVM-KDNNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V+ L DP K + L V
Sbjct: 502 LGLAEHQLRFT--CRVH------------------LHDPRKEQEMALRVYS--------- 532
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGL-------------EDKPRTAFFCCTWSAA 403
HL LKD C + +G + P T +W+
Sbjct: 533 -------------HLKSVLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 404 DDKLARKIISAMEN 417
D++L + S ++
Sbjct: 580 DEELGSYLTSLLKK 593
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 214/341 (62%), Gaps = 32/341 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 216 VHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 275
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 276 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 335
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 336 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 395
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 396 AEPESVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 455
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 456 M---------------------AQGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKE 492
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTAR---MLRD 334
LG H+++F C V++ + K T++ + ML+D
Sbjct: 493 LGLAEHQLRFT--CRVHLHDPRKEQETAMRVYSHLKSMLKD 531
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 209/329 (63%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T++
Sbjct: 502 LGLAEHQLRFT--CRVHLHDPRKEQETAM 528
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 202/320 (63%), Gaps = 28/320 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 196 VHETMEKGGKVLIPVFALGRAQELCILLETYWERMNLKAPIYFSTGLTEKANHYYKLFIT 255
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K T+ N F+F+++ FDRS ID PGP V+FATPGML G SL++FK WA +E
Sbjct: 256 WTNQKIKNTFVQRNMFEFEHIKPFDRSYIDNPGPMVVFATPGMLHAGLSLQIFKKWASNE 315
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K+++G IEL+ IDV+ + ++FS H D GIM L++
Sbjct: 316 NNMVVIPGYCVAGTVGHKVLAGQKKIELDKKNVIDVKLSVQYMSFSAHADAAGIMQLIRT 375
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++VILVHGE KM LK++I+ E I CY PAN E++ +P++ + S
Sbjct: 376 AEPRNVILVHGEGGKMEFLKQKIEQEFRIPCYKPANGETVTVPTSPVIAVDMS------- 428
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
LK E + + LPL +G+LV+ K E +++ +E +
Sbjct: 429 ----LSLLKRKIEARLTPDN----NHLPL--------QGVLVM-KDESLRLLESEEAMKE 471
Query: 297 LGEKRHEVQFAYCCPVNVDE 316
LG +H+++F + E
Sbjct: 472 LGLTQHQLRFTSTVTMETSE 491
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRK 522
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRK 522
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRK 522
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 207/323 (64%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 502 LGLAEHQLRFT--CRVHLHDTRK 522
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 234/434 (53%), Gaps = 82/434 (18%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +ELEG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLELEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPENVLLVHGEAKKMEFLKQKIEQEFRLSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-DAKKARLLHGTLIM-KDSTFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V+ L DP K + + V
Sbjct: 502 LGLAEHQLRFT--CRVH------------------LHDPRKEQEMAMRVYS--------- 532
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGL-------------EDKPRTAFFCCTWSAA 403
HL LKD C + +G + P T +W+
Sbjct: 533 -------------HLKSLLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 404 DDKLARKIISAMEN 417
D++L + S ++
Sbjct: 580 DEELGSYLTSLLKK 593
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 208/328 (63%), Gaps = 29/328 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WER+NL+ PIYFS GLT +AN YYK+ I+
Sbjct: 196 VHETVERGGKVLIPVFALGRAQELCILLETFWERVNLKAPIYFSTGLTEKANHYYKLFIT 255
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 256 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 315
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 316 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 375
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 376 AEPESVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKRE 435
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 436 M---------------------AQGLLP-SAKKPRLLHGTLIM-KDSSFQLVSSEQALKE 472
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTS 324
LG H+++F C V++ + K T+
Sbjct: 473 LGLAEHQLRFT--CRVHLHDSRKEQETA 498
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 129/228 (56%), Positives = 171/228 (75%), Gaps = 8/228 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
VH+CV GGKVLIP FALGR QELCIL+D YWE+MNL VPIYFSAGL +AN+YYK+ I
Sbjct: 224 VHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLSHVPIYFSAGLAEKANLYYKLFI 283
Query: 60 SWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+WT+QK+K+T+ N FDFK++ F L+DAPG VLFATPGML G SLEVFK WAP+
Sbjct: 284 NWTNQKIKQTFVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWAPN 343
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIEL----EGTKIDVRCQIHQLAFSPHTDGKGIMD 172
E+N+ +PGYC+ GT+GNKL++ N ++ + T ++V+C+IH L+FS H D KGI+
Sbjct: 344 ELNMTIIPGYCVVGTVGNKLLANNAGSQMVEIDKKTTLEVKCKIHNLSFSAHADAKGILQ 403
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
L+K +P++VILVHGEK KM L ++I E+G+ CY PAN ++ I +
Sbjct: 404 LIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTITIDT 451
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 208/328 (63%), Gaps = 29/328 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP ALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVXALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL + CY PAN E++ +P++ + G S ++
Sbjct: 405 AEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTS 324
LG H+++F C V++ + K T+
Sbjct: 502 LGLAEHQLRFT--CKVHLHDTRKEQETA 527
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/310 (44%), Positives = 198/310 (63%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ P+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD+ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDKGYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++ G +E E + ++V+ + ++FS H D KGIM L+++
Sbjct: 345 NNMVIMPGYCVQGTVGHKILGGAKKVEFENRQVVEVKMSVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E I C+ PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAVKMEFLKDKIREEFHIDCFTPANGETCVITTPIKIPVEASLSILK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E K + P K R+ G+LV+ K K ++ DE+
Sbjct: 463 -----------DEAKKYNAE-------PPDPKRRRIVHGLLVM-KDNKISLMSIDEIFNE 503
Query: 297 LGEKRHEVQF 306
G RH ++F
Sbjct: 504 CGINRHVIRF 513
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 142/317 (44%), Positives = 204/317 (64%), Gaps = 25/317 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+C+ GGKVLIP FALGRAQELCILL+ YWERMNL+ P+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECMDRGGKVLIPVFALGRAQELCILLETYWERMNLKAPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDRS ID PGP V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDRSYIDNPGPMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G +E E +I +V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGFCVQGTVGHKILNGAKRVEFENKQIVEVKMSVEYMSFSAHADAKGIMQLIQH 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I E I CY+PAN E+ C+ ST ++
Sbjct: 405 CEPRNVMLVHGEAEKMEFLKQKILQEFSINCYNPANGET-CVISTP----------VKIP 453
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
++ + LKS + + S LP K R G+LV+ K ++ D+
Sbjct: 454 IDVSLPLLKSEARKFS---------ALPPDPKRRRTLHGVLVM-KENNVCLMDVDDACKE 503
Query: 297 LGEKRHEVQFAYCCPVN 313
G RH ++F+ +N
Sbjct: 504 AGINRHIIRFSSTVHLN 520
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 181/260 (69%), Gaps = 17/260 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+H+CV GGKVLIP FALGR QELCIL+D YWE+MNL +PIYFSAGL +AN+YYK+ I
Sbjct: 224 IHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFI 283
Query: 60 SWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+WT+QK+K+T+ N FDFK++ F L+DAPG VLFATPGML G SLEVFK WAP+
Sbjct: 284 NWTNQKIKQTFVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWAPN 343
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPT-----------IELE-GTKIDVRCQIHQLAFSPH 164
E+N+ +PGYC+ GT+GNKL++ +E++ T I+V+C+IH L+FS H
Sbjct: 344 ELNMTIIPGYCVVGTVGNKLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFSAH 403
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYV 224
D KGI+ L+K +P++VILVHGEK KM L ++I E+G+ CY PAN ++ I + +
Sbjct: 404 ADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKSI 463
Query: 225 KAGAS-DAFIRSCMNPNFQY 243
S + R ++ ++QY
Sbjct: 464 PIDISLNLLKRQILDYSYQY 483
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 153/421 (36%), Positives = 236/421 (56%), Gaps = 54/421 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV+ GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVSKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+HV+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKHVMLVHGEAEKMKFLRAKIRDEFNLETYMPANGETCVISTPVKIPVDASISLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
+G RH ++F V +D+ P ++ +L+ + + + E
Sbjct: 504 IGINRHVMRFT--SKVKMDD----------PGPKLRTSEKLKALLEEKLTGWTVTMQESG 551
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
I + VES ++V E P+ TW+ D+ + I++ ++
Sbjct: 552 I------ITVESVEINV-----------EEDEKDPKQKTILITWTNQDEDIGAYILNVLQ 594
Query: 417 N 417
N
Sbjct: 595 N 595
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/420 (37%), Positives = 237/420 (56%), Gaps = 56/420 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM LV+
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLVRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM LK++I+ E + CY PAN E++ + + + G S ++
Sbjct: 405 AEPDNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETVTLLTHPNIPVGISLGLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M G LP K ++ G L++ K ++V ++ L
Sbjct: 465 M---------------------ALGLLP-DAKKPKLMHGTLIM-KDNNFRLVSSEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F C V++ + K T L S L +L A + L +G+
Sbjct: 502 LGLAEHQLRFT--CRVHIHDTRKEQETVLRVY---------SHLKSVLKAHSVQHLPDGS 550
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ VES + T ED P T +W+ D++L + S ++
Sbjct: 551 V-------MVESILIQA----------TAHSED-PGTKVLLVSWTYQDEELGSYLTSLLK 592
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 219/367 (59%), Gaps = 33/367 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS G+T +AN YYK+ I+
Sbjct: 225 VHESIERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGMTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS D PGP V+FATPGML G SL++FK WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GTIG+K+++G +E+EG +DV+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRM 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++++LVHGE KM LK +I+ E I CY PAN E++ + + V S ++
Sbjct: 405 AEPRNMLLVHGEAAKMEFLKGKIEQEFSIDCYMPANGETVTVKTNPSVPVDMSVNLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M G LP K R G L++++S K+V ++ L
Sbjct: 465 M--------------------ALGGPLP-DPKKPRSMHGTLIMKESS-LKLVSSEQALKE 502
Query: 297 LGEKRHEVQFAYCCPV-----NVDELEKFTT--TSLTPTARMLRDPNKSSLIRLLVAKLS 349
LG H+++F P+ + + L + T SL + P+ + ++ +V K+S
Sbjct: 503 LGLNEHQLRFTCRVPLQDPHSDSETLHRIYTHLKSLLKGYTIQHLPDGTVMVESIVIKVS 562
Query: 350 RKLSEGN 356
+ N
Sbjct: 563 SSAEDAN 569
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 220/371 (59%), Gaps = 37/371 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS D PGP V+FATPGML G SL++FK WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K+++G +E+EG +DV+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRM 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++++LVHGE KM LK++I+ E I C+ PAN E+ I + V S ++
Sbjct: 405 AEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDISLNLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M G LP K R G L++ K ++V ++ L
Sbjct: 465 M--------------------ALGGPLP-DAKRPRTMHGTLIM-KDNSLRLVSPEQALKE 502
Query: 297 LGEKRHEVQFAYCCPV-------NVDELEKFTT--TSLTPTARMLRDPNKSSLIRLLVAK 347
LG H+++F C V + D L + T S+ + + P+ + ++ +V K
Sbjct: 503 LGLNEHQLRFT--CRVQLHDPHSDTDTLSRIYTHLKSVLKSYSIQHVPDGTVIVESIVIK 560
Query: 348 LSRKLSEGNIQ 358
++ E N++
Sbjct: 561 VTSSAEEPNLK 571
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/420 (36%), Positives = 231/420 (55%), Gaps = 66/420 (15%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FALGRAQELCILL+ YW+RMNLRVPIYF+ GLT +A YYKM I+
Sbjct: 225 VHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPIYFAVGLTEKATNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDR+ ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDRAFIDNPGPMVVFATPGMLHAGLSLQIFKKWAPFE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K++SG +EL+ + ++V+ + ++FS H D KGIM L++
Sbjct: 345 ANMVIMPGYCVAGTVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIQQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM L+++I+ E I C PAN E++ I + V + ++
Sbjct: 405 CEPANVLLVHGEAGKMDFLRKKIRQEFAIDCSMPANGETVVIETPDTVPIDVAVPLLKHA 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+ GS+ K ++ G LV+ +++ + +
Sbjct: 465 L---------GSDSKR-----------------PKLIHGALVMH-DRGVRLLDSRQAMQE 497
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H++ +FTTT +P +++L L +L +L
Sbjct: 498 LGLTSHQI--------------RFTTTVASP---------RAALADALYTRLRDRLPGVQ 534
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ G + V S + V G ED + C +W+ D+ L ++S ++
Sbjct: 535 LLPDGS-IAVASALVKV-----------GGQEDDAASRAICVSWTLQDEDLGSHLLSLVQ 582
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 173/244 (70%), Gaps = 4/244 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FALGRAQELCILL+ YW+RMNLRVPIYF+ GLT +A YYKM I+
Sbjct: 196 VHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPIYFAVGLTEKATNYYKMFIT 255
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDR+ ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 256 WTNQKIRKTFVQRNMFDFKHIKPFDRAFIDNPGPMVVFATPGMLHAGLSLQIFKKWAPFE 315
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K++SG +ELE + ++V+ + ++FS H D KGIM L++
Sbjct: 316 ANMVIMPGYCVAGTVGHKVLSGARKVELENRQVVEVKMSVQYMSFSAHADAKGIMQLIQQ 375
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM L+++I E + CY PAN E++ I + V + ++
Sbjct: 376 CEPANVLLVHGEAGKMDFLRKKILQEFSVDCYMPANGETVVIETPDTVPVDVAVPLLKHA 435
Query: 237 MNPN 240
+ +
Sbjct: 436 LGSD 439
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/424 (38%), Positives = 236/424 (55%), Gaps = 63/424 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FALGRAQELCILL+ YWERMNL+ P+YF+ GLT +AN YYKM I+
Sbjct: 225 VHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD+S ID PG V+FATPGML G SL +FK WAP E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPYE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+ GT+G+K+++G IE E + ++V+ + ++FS H D KGIM L+++
Sbjct: 345 QNMLIMPGFCVQGTVGHKILNGAKKIEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQY 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E I CY PAN E+ I + + S
Sbjct: 405 CEPKNVLLVHGEAQKMEFLKDKIEKEFKISCYMPANGETAIINTPTKIPIDVS------- 457
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+ LK+ + + P K RV G+L + K + + DE+
Sbjct: 458 ----LRLLKAEAVRYNAQ---------PPDPKRRRVVHGVLCV-KDNRLSFLDIDEMCDE 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKL---SRKLS 353
+G RH ++F V D+ S TA L+ LL KL S +S
Sbjct: 504 IGINRHIIRFT--STVRFDD-----AGSAIKTAEKLK--------TLLAEKLQGWSITIS 548
Query: 354 EGNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIIS 413
+GNI VES + V G +D ++ + +W+ D+ L I+
Sbjct: 549 DGNI-------SVESVLIKV-----------EGEDDNTKSIY--VSWTNQDEDLGSYILG 588
Query: 414 AMEN 417
+++
Sbjct: 589 LLQS 592
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/420 (36%), Positives = 231/420 (55%), Gaps = 66/420 (15%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FALGRAQELCILL+ YW+RMNLRVPIYF+ GLT +A YYKM I+
Sbjct: 259 VHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPIYFAVGLTEKATNYYKMFIT 318
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDR+ ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 319 WTNQKIRKTFVQRNMFDFKHIKPFDRAFIDNPGPMVVFATPGMLHAGLSLQIFKKWAPFE 378
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K++SG +EL+ + ++V+ + ++FS H D KGIM L++
Sbjct: 379 ANMVIMPGYCVAGTVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIQQ 438
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM L+++I+ E I C PAN E++ I + V + ++
Sbjct: 439 CEPANVLLVHGEAGKMDFLRKKIRQEFAIDCSMPANGETVVIETPDTVPIDVAVPLLKHA 498
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+ GS+ K ++ G LV+ +++ + +
Sbjct: 499 L---------GSDSKR-----------------PKLIHGALVMH-DRGVRLLDSRQAMQE 531
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H++ +FTTT +P +++L L +L +L
Sbjct: 532 LGLTSHQI--------------RFTTTVASP---------RAALADALYTRLRDRLPGVQ 568
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
+ G + V S + V G ED + C +W+ D+ L ++S ++
Sbjct: 569 LLPDGS-IAVASALVKV-----------GGQEDDAASRAICVSWTLQDEDLGSHLLSLVQ 616
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 156/423 (36%), Positives = 237/423 (56%), Gaps = 58/423 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRSKIKDEFNLETYMPANGETCVISTPVKIPVDASVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
+G RH ++F V +D+ TS L+A L KL+
Sbjct: 504 IGINRHVMRFT--SKVKMDDSGPVIRTS-----------------ERLMALLEEKLAGWT 544
Query: 357 I--QDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISA 414
+ Q+ G + +ES + V E P+ +W+ D+ + I++
Sbjct: 545 VTMQENGS-IAIESVEVKV-----------EEDEKDPKQKNILISWTNQDEDIGAYILNV 592
Query: 415 MEN 417
++N
Sbjct: 593 LQN 595
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 162/221 (73%), Gaps = 3/221 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH CVA GGKVLIP FALGRAQELCILL+ YWERM+L VPI+FS GL +A YY++ IS
Sbjct: 226 VHDCVANGGKVLIPVFALGRAQELCILLESYWERMDLTVPIFFSHGLAEKATQYYRLFIS 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K T+ N FDFK++ FD+S D+PGP VLF+TPGML GG SL VFK W E
Sbjct: 286 WTNEKIKRTFVHRNMFDFKHIRPFDQSFSDSPGPMVLFSTPGMLHGGQSLRVFKKWCSDE 345
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ +PG+C+AGTIG K++ G +E++G +D+ + ++FS H D KGIM L++
Sbjct: 346 KNMVIMPGFCVAGTIGAKVIGGAKKVEIDGKMLDINLGVEYMSFSAHADAKGIMQLIRQC 405
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P++V+ VHGE KM LKE+++ E G++ Y PAN ES+C+
Sbjct: 406 EPKNVMFVHGENAKMEFLKEKVEKEFGLRVYKPANGESICV 446
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 156/423 (36%), Positives = 236/423 (55%), Gaps = 58/423 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRSKIKDEFNLETYMPANGETCVISTPVKIPVDASVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
+G RH ++F V +D+ TS L A L KL+
Sbjct: 504 IGINRHVMRFT--SKVKMDDSGPVIRTS-----------------ERLAALLEEKLAGWT 544
Query: 357 I--QDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISA 414
+ Q+ G + +ES + V E P+ +W+ D+ + I++
Sbjct: 545 VTMQENGS-IAIESVEVKV-----------EEDEKDPKQKNILISWTNQDEDIGAYILNV 592
Query: 415 MEN 417
++N
Sbjct: 593 LQN 595
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 236/421 (56%), Gaps = 60/421 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FALGRAQELCILL+ YW+RMNL+VPIYF+ GLT +A YYKM I+
Sbjct: 225 VHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLKVPIYFAVGLTEKATNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDR+ ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDRAFIDNPGPMVVFATPGMLHAGLSLQIFKKWAPVE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K++SG +EL+ + ++V+ + ++FS H D KGIM L+
Sbjct: 345 GNMVIMPGYCVAGTVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM L++++ E I CY PAN E++ I + + S ++
Sbjct: 405 CEPSNVLLVHGEASKMEFLRKKVLQEFNIDCYMPANGETVQIDTPDIIPIDVSLPLLKRA 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
++ + GS+ K ++ G L+++ + +++ + +
Sbjct: 465 LS------QGGSDSKK-----------------PKLIHGALIMQDN-TIRLMDSGQAMQE 500
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F V+ + SLT TA + + K+ + +
Sbjct: 501 LGVVGHQIRFTTTVSVS-------SRGSLTKTADA------------IYGNIKNKIKDPS 541
Query: 357 IQDFGE-HLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
IQ + + V S + V G ED+ A C +W+ D++L ++ +
Sbjct: 542 IQLLPDGSISVASALIKV-----------GGQEDESNKA-ICVSWTLQDEELGSYLLGLV 589
Query: 416 E 416
+
Sbjct: 590 Q 590
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 236/421 (56%), Gaps = 60/421 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FALGRAQELCILL+ YW+RMNL+VPIYF+ GLT +A YYKM I+
Sbjct: 225 VHDCIDEGGKVLIPVFALGRAQELCILLETYWDRMNLKVPIYFAVGLTEKATNYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FDR+ ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 285 WTNQKIRKTFVQRNMFDFKHIKPFDRAFIDNPGPMVVFATPGMLHAGLSLQIFKKWAPVE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+AGT+G+K++SG +EL+ + ++V+ + ++FS H D KGIM L+
Sbjct: 345 GNMVIMPGYCVAGTVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P +V+LVHGE KM L++++ E I CY PAN E++ I + + S ++
Sbjct: 405 CEPSNVLLVHGEASKMELLRKKVLQEFNIDCYMPANGETVQIDTPDIIPIDVSLPLLKRA 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
++ + GS+ K ++ G L+++ + +++ + +
Sbjct: 465 LS------QGGSDSKK-----------------PKLIHGALIMQDN-MIRLMDSGQAMQE 500
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
LG H+++F V+ + SLT TA + + K+ + +
Sbjct: 501 LGVVGHQIRFTTTVSVS-------SRGSLTKTADA------------IYGNIKNKIKDPS 541
Query: 357 IQDFGE-HLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAM 415
IQ + + V S + V G ED+ A C +W+ D++L ++ +
Sbjct: 542 IQLLPDGSISVASALIKV-----------GGQEDESNKA-ICVSWTLQDEELGSYLLGLV 589
Query: 416 E 416
+
Sbjct: 590 Q 590
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 217/371 (58%), Gaps = 37/371 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHESIERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS D PGP V+FATPGML G SL++FK WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GTIG+K+++G +E+EG +DV+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRM 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++++LVHGE KM LK +I+ E I CY PAN E+ + + V S ++
Sbjct: 405 AEPRNMLLVHGEAVKMEFLKGKIEQEFSIDCYMPANGETTTVTTNPSVPVDISLNLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M G LP K R G L++ K K+V ++ L
Sbjct: 465 M--------------------ALGGPLP-DPKKPRTMHGTLIM-KENSLKLVSSEQALKE 502
Query: 297 LGEKRHEVQFAYCCPV-------NVDELEKFTT--TSLTPTARMLRDPNKSSLIRLLVAK 347
LG H+++F C V + D L + T S+ + P+ + ++ +V K
Sbjct: 503 LGLNEHQLRFT--CHVQLQDPHSDADTLHRIYTHLKSVLKGYTIQHLPDGTVIVESIVIK 560
Query: 348 LSRKLSEGNIQ 358
+S + N +
Sbjct: 561 VSSSTEDSNTK 571
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 199/310 (64%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPVKIPVDASVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQF 306
+G RH ++F
Sbjct: 504 IGINRHVMRF 513
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 199/311 (63%), Gaps = 25/311 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKNYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPVKIPVDASVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFA 307
+G RH ++F
Sbjct: 504 IGINRHVMRFT 514
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 222/371 (59%), Gaps = 37/371 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHESIERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS D PGP V+FATPGML G SL++FK WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GTIG+K+++G +E+EG +DV+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRM 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++++LVHGE KM LK +I+ E I CY PAN E++ + + V S ++
Sbjct: 405 AEPRNMLLVHGEAAKMEFLKGKIEQEFNIDCYMPANGETVTVTTNPSVPVDISLNLLKRE 464
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M V G G LP K R G L++ K ++V ++ L
Sbjct: 465 M---------------VLG-----GPLP-DPKKPRAMHGTLIM-KENSLRLVSSEQALKE 502
Query: 297 LGEKRHEVQFAYCCPVNV-------DELEKFTT--TSLTPTARMLRDPNKSSLIRLLVAK 347
LG H+++F C V++ D L + T S+ + P+ + ++ +V K
Sbjct: 503 LGLNEHQLRFT--CRVHLQDPHSDNDTLHRVYTHLKSVLKGYTVQHLPDGTVMVESIVVK 560
Query: 348 LSRKLSEGNIQ 358
+S + +++
Sbjct: 561 VSSSAEDASMK 571
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/421 (36%), Positives = 235/421 (55%), Gaps = 54/421 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVLKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + I+V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVECENRQIIEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+HV+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKHVMLVHGEAEKMKFLRAKIRDEFNLETYMPANGETCVISTPVKIPVDASISLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E ++ + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARTYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGN 356
+G RH ++F V +D+ P ++ +L+ + + L E
Sbjct: 504 IGINRHVMRFT--SKVKMDD----------PGPKLRTSEKLKTLLEEKLIGWNVMLQESG 551
Query: 357 IQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAME 416
I + +E+ ++V E P+ TW+ D+ + I++ ++
Sbjct: 552 I------ITIETVEINV-----------EEDEKDPKQKTILITWTNQDEDIGAYILNVLQ 594
Query: 417 N 417
N
Sbjct: 595 N 595
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 199/310 (64%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVARGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + A+ + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRSKIKDEFNLETYMPANGETCVISTPVRIPVDAAVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQF 306
+G RH ++F
Sbjct: 504 IGINRHVMRF 513
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 199/310 (64%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVARGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + A+ + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRSKIKDEFNLETYMPANGETCVISTPVRIPVDAAVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQF 306
+G RH ++F
Sbjct: 504 IGINRHVMRF 513
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 199/311 (63%), Gaps = 25/311 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + A+ + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRSKIRDEFNLETYMPANGETCVISTPVKIPVDAAVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E +S + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARSYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFA 307
+G RH ++F
Sbjct: 504 IGINRHVMRFT 514
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 140/329 (42%), Positives = 207/329 (62%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E+ I + + S ++
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDISLGLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
E ++ G LP K ++ G L++ K ++V ++ L
Sbjct: 463 ------------RETAI-------GLLPD-AKKPKLMHGTLIM-KDNSFRLVSPEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T L
Sbjct: 502 LGLAEHQLRFT--CRVHIQDPRKEHETVL 528
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 205/329 (62%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E+ I + + S ++
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDISLGLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+ G LP K ++ G L++ K ++V ++ L
Sbjct: 463 -------------------RETAMGLLP-DAKKPKLMHGTLIM-KDNSFRLVSPEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T L
Sbjct: 502 LGLAEHQLRFT--CRVHIQDPRKEHETVL 528
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 199/310 (64%), Gaps = 25/310 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YWERMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRAKIRDEFNLETYMPANGETCVISTPVKIPVDASISLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E ++ + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARAYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQF 306
+G RH ++F
Sbjct: 504 IGINRHVMRF 513
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 205/329 (62%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + CY PAN E+ I + + S ++
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDISLGLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+ G LP K ++ G L++ K ++V ++ L
Sbjct: 463 -------------------RETATGLLPDS-KKPKLMHGTLMM-KDNSFRLVSPEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T L
Sbjct: 502 LGLTEHQLRFT--CRVHIQDPRKEHETVL 528
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 199/311 (63%), Gaps = 25/311 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CVA GGKVLIP FALGRAQELCILL+ YW+RMNL+ PIYF+ GLT +AN YYKM I+
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYWDRMNLKYPIYFALGLTEKANTYYKMFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N FDFK++ FD++ ID PG V+FATPGML G SL++FK WAP+E
Sbjct: 285 WTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+GNK++ G +E E + ++V+ + ++FS H D KGIM L++
Sbjct: 345 NNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQN 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM L+ +I+ E ++ Y PAN E+ I + + AS + ++
Sbjct: 405 CEPKNVMLVHGEAEKMKFLRSKIKDEFNLETYMPANGETCVISTPVKIPVDASVSLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E ++ + P K R+ G+LV+ K + + + + L
Sbjct: 463 -----------AEARTYNAQ-------PPDPKRRRLIHGVLVM-KDNRIMLQNLTDALKE 503
Query: 297 LGEKRHEVQFA 307
+G RH ++F
Sbjct: 504 IGINRHVMRFT 514
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 207/330 (62%), Gaps = 30/330 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDA-PGPCVLFATPGMLTGGFSLEVFKHWAPS 116
WT+QK+++T+ N F+FK++ FDR+ A P V+FATPGML G SL++F+ WA +
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAXXXAHPCAMVVFATPGMLHAGQSLQIFRKWAGN 344
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVK 175
E N++ +PGYC+ GT+G+K++SG +E+EG ++ +VR Q+ ++FS H D KGIM LV
Sbjct: 345 EKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVRMQVEYMSFSAHADAKGIMQLVG 404
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
P+ V+LVHGE KM LK++I+ E + CY PAN E++ +P++ + G S ++
Sbjct: 405 QAEPESVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKR 464
Query: 236 CMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 465 EM---------------------AQGLLP-DAKKPRLLHGTLIM-KDSNFRLVSSEQALK 501
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T++
Sbjct: 502 ELGLAEHQLRFT--CRVHLHDTRKEQETAM 529
>gi|449686516|ref|XP_002164154.2| PREDICTED: integrator complex subunit 11-like [Hydra
magnipapillata]
Length = 526
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/418 (36%), Positives = 226/418 (54%), Gaps = 48/418 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+CV +VLIP FALGRAQELCILL+ +W+RMN++ PIYFS GLT +AN YYK+ I+
Sbjct: 138 LHQCVQL--QVLIPVFALGRAQELCILLETFWDRMNIKAPIYFSMGLTEKANHYYKLFIT 195
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK++ T+ N FDFK++ FDRS ID PGP V+FATPGML G SL++FK WAP E
Sbjct: 196 WTNQKIRNTFVQRNLFDFKHIKAFDRSYIDNPGPMVVFATPGMLHAGLSLQIFKKWAPDE 255
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + +PGYC+ GT+G+K++SG IEL+ T +DV+ + L+FS H D GIM L++
Sbjct: 256 NNTLIMPGYCVIGTVGHKVLSGQKKIELDKKTTVDVKLSVQYLSFSAHADASGIMQLIRQ 315
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK +I E + CY PAN +S+ IP V S ++
Sbjct: 316 CEPKNVMLVHGEGSKMEFLKSQINKEFNLDCYMPANGQSITIPMQPKVVIDMSKGMLK-- 373
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
K + ++ + + +E + +G+LV++ E AK+V
Sbjct: 374 -------------RKQANAESQSKRHRLIKVNNEVLVDGLLVMKNME-AKLVESHMAAHE 419
Query: 297 LGEKRHEVQFAYCCPVNVDE-LEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEG 355
L H+++F + E L++F + L L +
Sbjct: 420 LNLDDHQLRFTSSVKIESSETLDEFFSN--------------------LKLDLEECFTTN 459
Query: 356 NIQDFGEH-LQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKII 412
++Q H L V+ SV LK I + +D +W DD L +++
Sbjct: 460 SVQKLSAHSLAVD----SVLLKYHSSAAIESNNKDSSSVKHLLISWKFEDDVLGSRVL 513
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/423 (35%), Positives = 237/423 (56%), Gaps = 62/423 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETIERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSMGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++FK WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++ G +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILGGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK++I+ E + C+ PAN E++ + +
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCHMPANGETVTVFT---------------- 448
Query: 237 MNPNFQY-LKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLL 295
NPN + G ++ +S + P ++ G L++ K ++V ++ L
Sbjct: 449 -NPNIPVDVSLGLLKRELSIGPVPDSKKP------KLMHGTLII-KDNSFRLVSPEQALK 500
Query: 296 MLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAK-LSRKLSE 354
LG H+++F C ++ +DP K L V L L +
Sbjct: 501 ELGLGEHQLRFT--CRIH------------------FQDPRKEHEAGLRVYNHLKSVLKD 540
Query: 355 GNIQDFGE-HLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIIS 413
++Q + + VES + V ++ + P T +W+ D+++ + S
Sbjct: 541 YSVQHLSDTSIMVESILIQVTVQS-----------EDPATKLLLVSWTYQDEEMGSYVTS 589
Query: 414 AME 416
++
Sbjct: 590 LLK 592
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 167/222 (75%), Gaps = 4/222 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P++V+LVHGE KM L+++I+ E + C+ PAN E+ I
Sbjct: 405 AEPRNVLLVHGEAKKMEFLRQKIEQEFHVSCFMPANGETTTI 446
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/246 (50%), Positives = 172/246 (69%), Gaps = 4/246 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GG V+IP FALGRAQELCIL++ YW+RM L VPIYFS GLT +A +YK+ I+
Sbjct: 202 VHECVLNGGNVIIPVFALGRAQELCILIESYWDRMGLDVPIYFSTGLTERATEFYKLFIN 261
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+K T+ N FDFK++ ++R+ ID PGP VLFATPGML G SLEVFK WAP
Sbjct: 262 WTNQKIKSTFSQRNMFDFKHIKTWNRNYIDQPGPKVLFATPGMLNAGTSLEVFKKWAPDP 321
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PG+C+AGT+G+K++ G IE++ T+ +V Q+ L+FS H D KGIM L++
Sbjct: 322 KNMVIMPGFCVAGTVGSKVLLGQKVIEIDKFTRFEVNLQVRNLSFSAHADAKGIMQLIRQ 381
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE+ KM L +I E I CY PAN S+ + + ++A S ++S
Sbjct: 382 CEPRNVVLVHGERGKMNFLSSKIMKEFAIPCYMPANGCSIKMETLQVLEAKISTNLLKSF 441
Query: 237 MNPNFQ 242
++ + Q
Sbjct: 442 LSNHQQ 447
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 186/310 (60%), Gaps = 23/310 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H V GGKVLIP FALGRAQELCILL+ YWERMN+ VPIYFS G+ +AN YYK+ IS
Sbjct: 225 IHARVEAGGKVLIPVFALGRAQELCILLETYWERMNISVPIYFSMGMAEKANEYYKLFIS 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+KET+ N FDFK++ + +D PGP V+FATPGML G SL +F+ WA E
Sbjct: 285 WTNQKIKETFVKRNMFDFKHIKPLGQGTVDNPGPMVVFATPGMLHAGQSLHIFRKWASDE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ +PGYC+AGT+G K+++G +E + ++V+ + L+FS H D +GIM L+
Sbjct: 345 RNMVVIPGYCVAGTVGYKILNGVRRLEFDKQVLEVKMAVEYLSFSAHADARGIMQLISHC 404
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P+HV+LVHGE KM LK +I+ E G+ C PAN E + I + AS F+
Sbjct: 405 QPKHVMLVHGEAIKMDFLKSKIEQEFGLPCSKPANGEVVHIKTEQQFIVEASREFL---- 460
Query: 238 NPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLML 297
N Y E PL IK R +G + +E E K++ + +L L
Sbjct: 461 --NQSYYSDDPNE-------------PL-IKRSRSIQGGIQIEPDETPKLLDRASVLASL 504
Query: 298 GEKRHEVQFA 307
K H ++F
Sbjct: 505 SLKEHVMRFT 514
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 202/323 (62%), Gaps = 29/323 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 217 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 276
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 277 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 336
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 337 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 396
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+ V+LVHGE KM LK++I+ EL +E++ +P++ + G S ++
Sbjct: 397 AEPESVLLVHGEAKKMEFLKQKIEQELRRGSRGQLLHEAVTLPTSPSIPVGISLGLLKRE 456
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 457 M---------------------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKE 493
Query: 297 LGEKRHEVQFAYCCPVNVDELEK 319
LG H+++F C V++ + K
Sbjct: 494 LGLAEHQLRFT--CRVHLHDTRK 514
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 119/224 (53%), Positives = 162/224 (72%), Gaps = 4/224 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELC+LL+ YW R NL+ PIYFS GLT +AN YYK+ I+
Sbjct: 242 VHETLDNGGKVLIPVFALGRAQELCVLLETYWNRTNLQYPIYFSGGLTEKANFYYKLFIN 301
Query: 61 WTSQKVKETY----NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
WT++K+K+T+ N F F++V D + I + P V FA+PGML GG+SL++FK WA
Sbjct: 302 WTNEKIKKTFTKNQNMFQFQHVKTLDTASIKSDQPMVCFASPGMLHGGYSLQIFKDWAGQ 361
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
E N + +PGYC+ GT+GNKL+SG I ++G IDVR +I+ ++FS H D KGIM+L+
Sbjct: 362 EKNTLIIPGYCMPGTVGNKLLSGEKKINIDGRDIDVRIKIYNMSFSAHADSKGIMELLSH 421
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
L ++V+LVHGEK KMA LK +I+ +L KCY PAN ++ I +
Sbjct: 422 LESKNVVLVHGEKQKMAVLKLQIEEQLDQKCYYPANYATLQIKT 465
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 205/329 (62%), Gaps = 29/329 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVEKGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA ++
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGND 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM L++
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQTLEVKMQVEYMSFSAHADAKGIMQLIRQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+LVHGE KM LK +I+ E I C P N E+ I + + S ++
Sbjct: 405 AEPRNVLLVHGEAKKMEFLKLKIEQEFRINCAMPLNGETATITTNPNIPVDISLGLLK-- 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
+E S+ G +P K R+ G L++ K ++V ++ L
Sbjct: 463 ------------KESSL-------GLVP-DCKKPRLMHGTLIM-KDNSFRLVSPEQALKE 501
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
+G H+++F C ++V + K T L
Sbjct: 502 IGLGEHQLRFT--CRLHVQDTHKEQETVL 528
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/160 (75%), Positives = 141/160 (88%), Gaps = 4/160 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+GGGKVLIP FALGRAQELC+LLDDYWERM L+VPIYFSAGLTIQAN+YYKMLI
Sbjct: 227 VHKCVSGGGKVLIPTFALGRAQELCMLLDDYWERMGLKVPIYFSAGLTIQANVYYKMLIG 286
Query: 61 WTSQKVKET---YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K++ +N FDFK+V +F+RS I+ PGPCVLFATPGM+TGGFSLE FK WAPSE
Sbjct: 287 WTSQKIKDSHTVHNPFDFKHVCHFERSFINNPGPCVLFATPGMITGGFSLEAFKKWAPSE 346
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEGTKIDVRCQI 156
NL+TLPGYC++GTIG+KLM G PT ++ E T IDVRCQ+
Sbjct: 347 KNLVTLPGYCVSGTIGHKLMCGKPTRVDYEDTHIDVRCQV 386
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/184 (68%), Positives = 147/184 (79%), Gaps = 17/184 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHKCV+GGGKVLIP FALGRAQELC+LLDDYWERM L+VPIYFSAGLTIQAN+YYKMLI
Sbjct: 227 VHKCVSGGGKVLIPTFALGRAQELCMLLDDYWERMGLKVPIYFSAGLTIQANVYYKMLIG 286
Query: 61 WTSQKVKET---YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTSQK+K++ +N FDFK+V +F+RS I+ PGPCVLFATPGM+TGGFSLE FK WAPSE
Sbjct: 287 WTSQKIKDSHTVHNPFDFKHVCHFERSFINNPGPCVLFATPGMITGGFSLEAFKKWAPSE 346
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPT-IELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
NL+TLPGYC++GTIG+KLM G PT ++ E T IDVRCQ GIM+ F
Sbjct: 347 KNLVTLPGYCVSGTIGHKLMCGKPTRVDYEDTHIDVRCQ-------------GIMNPSPF 393
Query: 177 LSPQ 180
P+
Sbjct: 394 RQPR 397
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 159/223 (71%), Gaps = 3/223 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH V+ GGKVLIP FALGRAQELCILL+ YWERMNL+ PI+FS GL +AN YY++ IS
Sbjct: 197 VHDTVSNGGKVLIPVFALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFIS 256
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K T+ N FDFK++ F++S ID+PGP VLF+TPGML GG SL VF W E
Sbjct: 257 WTNEKIKRTFVERNMFDFKHIRPFEQSYIDSPGPMVLFSTPGMLHGGQSLRVFTKWCSDE 316
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI +PG+C+A T+G K++SG IE+ G ++ + ++FS H D KGIM L++
Sbjct: 317 KNLIIMPGFCVANTVGAKVISGMKKIEIAGRMREINLGVEYMSFSAHADAKGIMQLIRDC 376
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
P++V+ VHGE KM LKE+++ E +K + PAN E++ I +
Sbjct: 377 QPRNVMFVHGEDAKMEFLKEKVEKEFNLKVFKPANGETITIET 419
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 155/217 (71%), Gaps = 3/217 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H V GGKVLIP FALGRAQELCILL+ YWERMN+ VPIYFS G+ +AN YYK+ IS
Sbjct: 294 IHARVEAGGKVLIPVFALGRAQELCILLETYWERMNISVPIYFSMGMAEKANEYYKLFIS 353
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+KET+ N F+FK++ + ++D PGP V+FATPGML G SL +F+ WAP E
Sbjct: 354 WTNQKIKETFVKRNMFEFKHIKPLGQGIVDNPGPMVVFATPGMLHAGQSLHIFRKWAPDE 413
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ +PGYC+AGT+G K+++G +E + +DV ++ L+FS H D +GIM L+
Sbjct: 414 RNMVVIPGYCVAGTVGYKILNGVKRLEFDRQALDVNMRVEYLSFSAHADARGIMQLISHC 473
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
P++V+LVHGE KM LK +I+ E G+ C PAN E
Sbjct: 474 QPRNVLLVHGEASKMDFLKAKIEQEFGLPCLKPANGE 510
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ +CV GGKVL+P FALGRAQELCILL+ +W+R +RVPIYFS GLT +AN YYK+ I+
Sbjct: 230 ITQCVQRGGKVLLPVFALGRAQELCILLETHWQRTGMRVPIYFSTGLTARANEYYKLFIT 289
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+KET+ N FDF++V FDRS ++ GP VLFATPGML G SL F HW
Sbjct: 290 WTNQKLKETFVERNLFDFQHVQPFDRSYLEHAGPQVLFATPGMLHAGTSLLAFTHWCEDP 349
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ LPGYC AGT+G K+++G +++EG VR + L+FS H D KGIM LV
Sbjct: 350 RNMVILPGYCTAGTVGAKIIAGIRELDIEGRHYTVRMDVEYLSFSAHADAKGIMQLVSQS 409
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFI 233
+ V+LVHGE+ KMA L RIQ ELG+ C+ P N + + + + V SDAF+
Sbjct: 410 GAKQVVLVHGEQQKMAFLAGRIQQELGLPCHFPPNGHCLTLSTNNPVPILVSDAFL 465
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 163/241 (67%), Gaps = 3/241 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH V+ GGKVLIP FALGRAQELCILL+ YWERMNL+ PI+FS GL +AN YY++ IS
Sbjct: 281 VHDTVSNGGKVLIPVFALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFIS 340
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K T+ N FDFK++ F++S D+PGP VLF+TPGML GG SL VF W E
Sbjct: 341 WTNEKIKRTFVERNMFDFKHIRPFEQSYTDSPGPMVLFSTPGMLHGGQSLRVFTKWCSDE 400
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI +PG+C+A T+G K++SG IE+ G ++ + ++FS H D KGIM L++
Sbjct: 401 KNLIIMPGFCVANTVGAKVISGMKKIEIAGRMREINLGVEYMSFSAHADAKGIMQLIRDC 460
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P++V+ VHGE KM LKE+++ E +K + PAN E++ I S V + C+
Sbjct: 461 QPKNVMFVHGEDAKMEFLKEKVEKEFNLKVFKPANGETITIESPLNVSLNVPVQILDRCI 520
Query: 238 N 238
+
Sbjct: 521 S 521
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 155/221 (70%), Gaps = 3/221 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FALGRAQELCILL+ YWER L PIYFS GLT +AN YY++ +
Sbjct: 258 VHRCVKNGGKVLIPVFALGRAQELCILLETYWERYKLDTPIYFSTGLTEKANEYYRLFVM 317
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T+QK+K+T+ N FDFK++ FDRS D PGP VLFATPGML G +LEVF WA
Sbjct: 318 YTNQKIKDTFVDRNLFDFKHIRAFDRSYADQPGPQVLFATPGMLHAGVALEVFAKWAGDP 377
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ LPGYC+AGT+G ++++G I + ++VR Q+ L+FS H D KGIM L+K
Sbjct: 378 RNMVILPGYCVAGTVGAQVIAGKKEIRVGQQMVNVRLQVEYLSFSAHADAKGIMTLIKQC 437
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++V+LVHGEK KM L +R++ EL C+ P N E + I
Sbjct: 438 GAKNVVLVHGEKKKMEFLADRVRRELDTPCFFPKNGERLQI 478
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 159/223 (71%), Gaps = 3/223 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH V+ GGKVLIP FALGRAQELCILL+ YWERMNL+ PI+FS GL +AN YY++ IS
Sbjct: 226 VHDTVSNGGKVLIPVFALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFIS 285
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K T+ N FDFK++ F++S I++PGP VLF+TPGML GG SL VF W E
Sbjct: 286 WTNEKIKRTFVERNMFDFKHIRPFEQSYIESPGPMVLFSTPGMLHGGQSLRVFTKWCSDE 345
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI +PG+C+A T+G K++SG IE+ G ++ + ++FS H D KGIM L++
Sbjct: 346 KNLIIMPGFCVANTVGAKVISGMKKIEIAGRVREINLGVEYMSFSAHADAKGIMQLIRDC 405
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
P++V+ VHGE KM LKE+++ E +K + PAN E++ I +
Sbjct: 406 QPRNVMFVHGEDAKMEFLKEKVEKEFNLKVFKPANGETVTIET 448
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 161/227 (70%), Gaps = 7/227 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL---RVPIYFSAGLTIQANMYYKM 57
VH CV+GGGKVL+P FALGRAQEL IL++ YW RM+ +VP+YFS GLT +AN YYK+
Sbjct: 234 VHDCVSGGGKVLVPVFALGRAQELLILIESYWRRMDDLCDKVPVYFSTGLTERANEYYKL 293
Query: 58 LISWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
ISWT++ VK N FDF ++ ++ S D PG VLFATPGML G SLEVFK W
Sbjct: 294 FISWTNENVKSALVERNMFDFAHIRSWSHSFADEPGAMVLFATPGMLHAGTSLEVFKKWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDL 173
N+I +PGYC+AGT+G K+++G I ++ TK++V QI L+FS H D KGI+ L
Sbjct: 354 HDPKNMIIMPGYCVAGTVGAKVLAGEKVINVDRFTKLNVNLQISNLSFSAHADAKGILQL 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
++ ++V+LVHGEK KMA LK RI+ ELGI C+DPAN ++CIP+
Sbjct: 414 IRASKAKNVMLVHGEKKKMAQLKIRIERELGIPCFDPANGAAICIPT 460
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 157/207 (75%), Gaps = 4/207 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 234 VHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 293
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 294 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 353
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 354 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 413
Query: 177 LSPQHVILVHGEKPKMATLKERIQSEL 203
P+ V+LVHGE KM LK++I+ EL
Sbjct: 414 AEPESVLLVHGEAKKMEFLKQKIEQEL 440
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 162/228 (71%), Gaps = 12/228 (5%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GKVLIP FALGR QELCILL+ YWER NL VPIYFSAG+ +AN YY++ I+WT++K+
Sbjct: 231 GKVLIPVFALGRVQELCILLETYWERKNLGKSVPIYFSAGMVEKANYYYQLYINWTNEKI 290
Query: 67 KETY-----NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
K T N F+F N+ +F+R L+D PGP VLFATPGML G SLEVFK WAP E N +
Sbjct: 291 KTTLFDQKRNLFNFSNIQSFERFLMDNPGPMVLFATPGMLHAGMSLEVFKKWAPGENNKV 350
Query: 122 TLPGYCLAGTIGNKLMSG----NPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
LPGYC+ GT+GNK++ + IE++ T ID+RC++ ++FS H D KGI+ L++
Sbjct: 351 ILPGYCVEGTVGNKVLRNKDLKSSKIEIDSRTVIDMRCEVKAISFSAHADAKGILQLIRT 410
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYV 224
P++V+LVHGE+ KMA K++I+SE I C+DP N ++ I +T V
Sbjct: 411 AQPKNVMLVHGERDKMAFFKKKIESEFKIPCFDPPNGGTIKIKTTSQV 458
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 207/368 (56%), Gaps = 39/368 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKV+IP FALGRAQELCILL+ YWERM L VPIYFS GL +AN YY++ IS
Sbjct: 230 VHESVMKGGKVIIPVFALGRAQELCILLESYWERMALTVPIYFSQGLAERANQYYRLFIS 289
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++ +K+T+ N F+FK++ ++ D PGP VLF+TPGML GG SL+VFK W
Sbjct: 290 WTNENIKKTFVERNMFEFKHIRPMEKGCEDMPGPQVLFSTPGMLHGGQSLKVFKKWCSDP 349
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
+N+I +PGYC+AGT+G K+++G IE++G D+R + ++FS H D KGIM L++
Sbjct: 350 INMIIMPGYCVAGTVGAKVINGEKRIEIDGKMHDIRLGVEYMSFSAHADAKGIMQLIRQC 409
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
PQHV+ VHGE KM LK +++ E + + PAN E++ I + + I +
Sbjct: 410 EPQHVMFVHGEAEKMEFLKGKVEKEYNVPVHMPANGETVSITAHPKLDIQVPMDQIEQSL 469
Query: 238 N--PN--------------------FQYLKSGSEEKSVSGSKCTEGTLPL-------WIK 268
N PN + +G E V +C TL L I
Sbjct: 470 NLDPNPAKQRCPFVADIVYDQETDTLNVMATGDNESLVDDDECMPITLSLSEIIRGRQID 529
Query: 269 DERVAEGILVLE-----KSEKAKVVHQDELLLMLGEKRHEVQFAY--CCPVNVDELEKFT 321
+R+A+ +L + K + ++ H + +L G+ +E++ + C + ++K
Sbjct: 530 WKRLAKELLAFDPHLQHKDDGIEMFHGEITVLANGDDENEIELIWDECREPWIKLIQKTL 589
Query: 322 TTSLTPTA 329
++TP +
Sbjct: 590 YENITPES 597
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 156/221 (70%), Gaps = 3/221 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKV+IP FALGRAQELCILL+ YWERM L VPIYFS GL +AN YY++ IS
Sbjct: 233 VHESVMKGGKVIIPVFALGRAQELCILLESYWERMALTVPIYFSQGLAERANQYYRLFIS 292
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++ +K+T+ N F+FK++ ++ D PGP VLF+TPGML GG SL+VFK W
Sbjct: 293 WTNENIKKTFVERNMFEFKHIRPMEKGCEDMPGPQVLFSTPGMLHGGQSLKVFKKWCSDP 352
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
+N+I +PGYC+AGT+G K+++G IE++G D+R + ++FS H D KGIM L++
Sbjct: 353 INMIIMPGYCVAGTVGAKVINGEKRIEIDGKMHDIRLGVEYMSFSAHADAKGIMQLIRQC 412
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
PQHV+ VHGE KM LK +++ E + + PAN E++ I
Sbjct: 413 EPQHVMFVHGEAEKMEFLKGKVEKEYSVPVHMPANGETVSI 453
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 197/329 (59%), Gaps = 31/329 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ 404
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
+ V + A S G+ CY PAN E++ +P++ + G S ++
Sbjct: 405 AEARGVSMGRASXSXQAFCPS--PSGPGVSCYMPANGETVTLPTSPSIPVGISLGLLKRE 462
Query: 237 MNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLM 296
M +G LP K R+ G L++ K ++V ++ L
Sbjct: 463 M---------------------AQGLLPD-AKKPRLLHGTLIM-KDSNFRLVSSEQALKE 499
Query: 297 LGEKRHEVQFAYCCPVNVDELEKFTTTSL 325
LG H+++F C V++ + K T++
Sbjct: 500 LGLAEHQLRFT--CRVHLHDPRKEQETAM 526
>gi|47229058|emb|CAG03810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 698
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 201/364 (55%), Gaps = 72/364 (19%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 293 VHETIERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 352
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDRS D PGP V+FATPGML G SL++FK WA +E
Sbjct: 353 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 412
Query: 118 MNLI--------------------TLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQI 156
N++ ++PGYC+ GTIG+K+++G +E+EG +DV+ Q+
Sbjct: 413 KNMVQFLRRECGRQQKHAALLSWSSMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQV 472
Query: 157 HQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL------------- 203
++FS H D KGIM L++ P++++LVHGE KM LK +I+ E
Sbjct: 473 EYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAAKMEFLKGKIEQEFSESRAAPRRAATG 532
Query: 204 -----------GIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEKS 252
GI CY PAN E+ + + V S ++ M
Sbjct: 533 PDSPANPAFPPGIDCYMPANGETATVSTNPSVPVDISLNLLKREM--------------- 577
Query: 253 VSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPV 312
G LP K R G L++ K ++V ++ L LG H+++F C V
Sbjct: 578 -----ALGGPLPD-PKKPRAMHGTLIM-KENSLRLVPPEQALKELGLNEHQLRFT--CRV 628
Query: 313 NVDE 316
++ +
Sbjct: 629 HLQD 632
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 156/221 (70%), Gaps = 3/221 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKV+IP FALGRAQELCILL+ YWERM L VPIYFS GL +AN YY++ IS
Sbjct: 230 VHECVMKGGKVIIPVFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFIS 289
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++ +K+T+ N F+FK++ ++ D PGP VLF+TPGML GG SL+VFK W
Sbjct: 290 WTNENIKKTFVERNMFEFKHIKPMEKGCEDQPGPQVLFSTPGMLHGGQSLKVFKKWCSDP 349
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
+N+I +PGYC+AGT+G ++++G IE++ ++R + ++FS H D KGIM L++
Sbjct: 350 LNMIIMPGYCVAGTVGARVINGEKKIEIDQKMHEIRLGVEYMSFSAHADAKGIMQLIRQC 409
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
PQHV+ VHGE KM LK +++ E + + PAN E++ I
Sbjct: 410 EPQHVMFVHGEASKMEFLKGKVEKEYKVPVHMPANGETVVI 450
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 168/247 (68%), Gaps = 5/247 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FALGRAQELCILL+ YWERMNL +PIY S G+ +A YYK+ ++
Sbjct: 192 VHDCINNGGKVLIPVFALGRAQELCILLESYWERMNLSIPIYVSKGMAEKAVDYYKLFVT 251
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WTS+K+K+T+ N FDFK+V F+ S D PGP V+FATPGML G SL++FK WA +E
Sbjct: 252 WTSEKIKKTFVKRNMFDFKHVLPFEDSFADTPGPMVVFATPGMLHSGQSLKIFKKWATNE 311
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+KL++G ++LE G ++V+ + ++FS H D KGI+ L++
Sbjct: 312 KNMVIMPGYCVQGTVGSKLIAGVRKLDLENGATLEVKLSVEYMSFSAHADSKGIVQLIRN 371
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P+HV+ VHGE KM LK++++ L I P N +++ + + + S ++
Sbjct: 372 CDPRHVLFVHGEDSKMEFLKQKVERMLSIPVLKPRNGQNVAVNTIPSIVIETSPQLLKDS 431
Query: 237 MNPNFQY 243
++ NF +
Sbjct: 432 LS-NFNH 437
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 4/241 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+CV GGKVLIP FALGRAQELCILL+ YW+RM L VP+YF+AGL +A YYK+ ++
Sbjct: 229 IHRCVENGGKVLIPVFALGRAQELCILLEQYWDRMKLNVPVYFTAGLAEKATNYYKLFVN 288
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSL-IDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
WT++K+K ++ N FDFK + F + + ++ GP V FATPGML G SLE+F++W
Sbjct: 289 WTNEKIKSSFVERNLFDFKYIKAFQKEIHMNQSGPQVCFATPGMLHAGMSLEIFQNWCTD 348
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
E N I +PGYC+AGT+G++L+ G + G + R ++ ++FS H D KGIM ++K
Sbjct: 349 EKNCIIMPGYCVAGTVGHRLLHGERHFKFNGVNVTSRIKVEYMSFSAHADAKGIMQIIKM 408
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
P++V+ VHGE KM L +++Q ++G+ C+ PAN E++ I +K R
Sbjct: 409 TEPKNVMFVHGEAAKMEFLAKKVQKDMGLPCFTPANGETVNISCPPQIKVKIESDLARKI 468
Query: 237 M 237
M
Sbjct: 469 M 469
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 156/221 (70%), Gaps = 3/221 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKV+IP FALGRAQELCILL+ YWERM L VPIYFS GL +AN YY++ IS
Sbjct: 230 VHETVMKGGKVIIPVFALGRAQELCILLESYWERMALSVPIYFSQGLAERANQYYRLFIS 289
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++ +K+T+ N F+FK++ ++ D PGP VLF+TPGML GG SL+VFK W
Sbjct: 290 WTNENIKKTFVERNMFEFKHIRPMEKGCEDQPGPQVLFSTPGMLHGGQSLKVFKKWCGDP 349
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
+N+I +PGYC+AGT+G ++++G IE++G D++ + ++FS H D KGIM L++
Sbjct: 350 LNMIIMPGYCVAGTVGARVINGEKKIEIDGKMHDIKLGVEYMSFSAHADAKGIMQLIRQC 409
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
PQHV+ VHGE KM LK +++ E + + PAN E++ I
Sbjct: 410 EPQHVMFVHGEAEKMEFLKGKVEKEYKVPVHMPANGETVVI 450
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 155/221 (70%), Gaps = 3/221 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKV+IP FALGRAQELCILL+ YWERM L VPIYFS GL +AN YY++ IS
Sbjct: 256 VHETVMKGGKVIIPVFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFIS 315
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++ +K+T+ N F+FK++ ++ D PGP VLF+TPGML GG SL+VFK W
Sbjct: 316 WTNENIKKTFVERNMFEFKHIRPMEKGCEDQPGPQVLFSTPGMLHGGQSLKVFKKWCSDP 375
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
+N+I +PGYC+AGT+G ++++G IE++G +++ + ++FS H D KGIM L++
Sbjct: 376 LNMIIMPGYCVAGTVGARVINGEKRIEIDGKVHEIKLGVEYMSFSAHADAKGIMQLIRQC 435
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+HV+ VHGE KM LK +++ E I + PAN E+ I
Sbjct: 436 EPKHVMFVHGEAEKMEFLKGKVEKEYDIPVHMPANGETCVI 476
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 158/228 (69%), Gaps = 3/228 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V CV+ GGKVLIP FALGRAQELC+LLD +WERM L+VPIYFS+GLT +AN YK +S
Sbjct: 222 VLDCVSNGGKVLIPIFALGRAQELCLLLDSHWERMQLKVPIYFSSGLTEKANNIYKQFLS 281
Query: 61 WTSQKVKET---YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ +K+ +N FDFK+ F + +D P VLFA+PGML G SL+VFK W
Sbjct: 282 YTNETIKKNAFNHNVFDFKHTTTFQKHFLDLNIPMVLFASPGMLHSGMSLKVFKEWCTDP 341
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NL+ +PGYC+ GT+G+K+++GN IE+ G +++ Q+ LAFS H D +GI++L+K
Sbjct: 342 KNLVIIPGYCVKGTVGDKVLNGNKEIEILGELKEIKIQVKNLAFSAHADAQGILNLIKMC 401
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVK 225
P++V+LVHGEK +++ LK+ I+ + I + PAN + IP +K
Sbjct: 402 QPKNVMLVHGEKSRISLLKKSIEKKFNIPVFKPANGTCINIPKQDLIK 449
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 157/245 (64%), Gaps = 3/245 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ C+A GG+VLIP FALGRAQELC+LLD YWER L+VP+YFS+GLT +AN YK IS
Sbjct: 220 ISDCIARGGRVLIPIFALGRAQELCLLLDGYWERTGLKVPVYFSSGLTEKANEIYKKFIS 279
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ VK+ N F++K++ F + +D GP VLFA+PGML G SL +FK W E
Sbjct: 280 YTNETVKKKIFERNVFEYKHIKPFQKYYMDNEGPMVLFASPGMLHSGMSLRMFKEWCSDE 339
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NL+ +PGYC+ GTIG K+++G +E+ G + D+R +I L+FS H D +GI+++++
Sbjct: 340 KNLVIIPGYCVRGTIGEKVLNGAKRLEILGEEKDIRIEIKNLSFSAHADAQGILNVIEQC 399
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
SP++V+LVHGE+ +M LK I+ GI + P N + IP V I
Sbjct: 400 SPRNVMLVHGERSRMKQLKRSIEERFGIPTFLPPNGTLINIPLKSTVSLRIRKESISRYF 459
Query: 238 NPNFQ 242
PN
Sbjct: 460 RPNLS 464
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 168/281 (59%), Gaps = 16/281 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V C+A GG+VLIP FALGRAQELC+LLD YWER L +P+YFS+GLT +AN YK I
Sbjct: 220 VSDCIARGGRVLIPIFALGRAQELCLLLDGYWERTGLEIPVYFSSGLTEKANEIYKKFIG 279
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ VK N F++K++ F R +D GP VLFA+PGML G SL +FK W E
Sbjct: 280 YTNETVKRKIFERNVFEYKHIKPFQRYYMDNKGPMVLFASPGMLHSGMSLRIFKEWCEDE 339
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NL+ +PGYC+ GTIG K+++G +E+ G + D++ +I L FS H D +GI+ +++
Sbjct: 340 KNLVIIPGYCVRGTIGEKILNGAKRLEILGEEKDIKLEIKNLGFSAHADAQGILSVIEQC 399
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
+P++V+LVHGE+ +M LK+ ++ GI + P N + IPS + V + S
Sbjct: 400 APRNVMLVHGERSRMKQLKKSVEERFGIPTFLPPNGTLINIPSKNIVNLKIRKGHLSSHF 459
Query: 238 NPNFQ--------YLKSGSEEKSVSGSKCTEGTLPLWIKDE 270
PN L S EE + C + +I+D+
Sbjct: 460 KPNLSKGKISLRMSLSSKKEENHIDVVDCED-----YIEDD 495
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 157/245 (64%), Gaps = 3/245 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V CVA GG+VLIP FALGRAQELC+LLD YWER L+ P+YFS+GLT +AN YK IS
Sbjct: 220 VSDCVARGGRVLIPIFALGRAQELCLLLDGYWERTGLKTPVYFSSGLTEKANEIYKKFIS 279
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ V++ N F++K++ F R +++ GP VLFA+PGML G SL++FK W E
Sbjct: 280 YTNETVRKKIFERNMFEYKHIKPFQRHYMESKGPMVLFASPGMLHSGMSLKIFKEWCEDE 339
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NL+ +PGYC+ GTIG K+++G +E+ G ++R ++ LAFS H D GI+++V+
Sbjct: 340 KNLVIIPGYCVRGTIGEKVLNGATKLEILGESREIRLEVKNLAFSAHADAPGILNVVEQC 399
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
SP++V+LVHGEK +M LK I+ GI + P N + IPS V +
Sbjct: 400 SPRNVMLVHGEKSRMKVLKRSIEERFGIPTFLPPNGTLINIPSRSMVSLRIKKESMSKHF 459
Query: 238 NPNFQ 242
PN
Sbjct: 460 KPNLS 464
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 155/227 (68%), Gaps = 3/227 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V C+A GG+VLIP FALGRAQELC+LLD YWER L++P+YFS+GLT +AN YK IS
Sbjct: 220 VSDCIARGGRVLIPIFALGRAQELCLLLDGYWERTGLKIPVYFSSGLTEKANEIYKKFIS 279
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ VK N F++K++ F + ++ GP VLFA+PGML G SL +FK W E
Sbjct: 280 YTNETVKRKIFERNVFEYKHIKPFQKYYMENKGPMVLFASPGMLHSGMSLRMFKEWCEDE 339
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NL+ +PGYC+ GTIG K+++G +E+ G + D+R ++ LAFS H D +GI+++++
Sbjct: 340 KNLVIIPGYCVRGTIGEKVLNGAKRLEVLGEEKDIRLEVRNLAFSAHADAQGILNVIEQC 399
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYV 224
SP++V+LVHGE+ +M LK I+ GI + P N + IPS + +
Sbjct: 400 SPRNVMLVHGERSRMKQLKRNIEERFGIPTFLPPNGTLINIPSKNTI 446
>gi|119576643|gb|EAW56239.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_g
[Homo sapiens]
gi|119576646|gb|EAW56242.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_g
[Homo sapiens]
Length = 342
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 56/387 (14%)
Query: 35 MNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGP 91
MNL+VPIYFS GLT +AN YYK+ I WT+QK+++T+ N F+FK++ FDR+ D PGP
Sbjct: 1 MNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGP 60
Query: 92 CVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI- 150
V+FATPGML G SL++F+ WA +E N++ +PGYC+ GT+G+K++SG +E+EG ++
Sbjct: 61 MVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVL 120
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
+V+ Q+ ++FS H D KGIM LV P+ V+LVHGE KM LK++I+ EL + CY P
Sbjct: 121 EVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMP 180
Query: 211 ANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDE 270
AN E++ +P++ + G S ++ M +G LP K
Sbjct: 181 ANGETVTLPTSPSIPVGISLGLLKREM---------------------AQGLLP-EAKKP 218
Query: 271 RVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTAR 330
R+ G L++ K ++V ++ L LG H+++F C V++ + K T+L
Sbjct: 219 RLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRF--TCRVHLHDTRKEQETALRVY-- 273
Query: 331 MLRDPNKSSLIRLLVAKLSRKLSEGNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDK 390
S L +L + L +G++ VE SV L+ P +
Sbjct: 274 -------SHLKSVLKDHCVQHLPDGSV-------TVE----SVLLQAAAP-------SED 308
Query: 391 PRTAFFCCTWSAADDKLARKIISAMEN 417
P T +W+ D++L + S ++
Sbjct: 309 PGTKVLLVSWTYQDEELGSFLTSLLKK 335
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/188 (54%), Positives = 143/188 (76%), Gaps = 4/188 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 259 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 318
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 319 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 378
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ ++R Q+ ++FS H D KGIM LV
Sbjct: 379 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEIRMQVEYMSFSAHADAKGIMQLVGQ 438
Query: 177 LSPQHVIL 184
P+ V+L
Sbjct: 439 AEPESVLL 446
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 152/252 (60%), Gaps = 33/252 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + + GGKVLIP FALGRAQELCILL+ YW+R +VP+YF+AG+ +AN YYK+ ++
Sbjct: 257 IQETIDQGGKVLIPVFALGRAQELCILLETYWQRTQSQVPVYFAAGMIEKANFYYKLFVN 316
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K +Y N FDFK + F RSLI GP VLFATPGML G S++VFK W E
Sbjct: 317 WTNEKIKSSYLTDNMFDFKYIKPFSRSLIKTNGPMVLFATPGMLHAGLSMQVFKEWCYDE 376
Query: 118 MNLITLPGYCLAGT------------------------------IGNKLMSGNPTIELEG 147
N + +PGYC+AGT IGNKL+SG + L+
Sbjct: 377 KNTLIIPGYCVAGTLGCVLISSFFFHIMKINFEFYLFFTLFDKIIGNKLLSGCKQVILDK 436
Query: 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKC 207
DV Q+ ++FS H D KGI+ L+K P++V+LVHG+ +M L E I+ + I+
Sbjct: 437 KVYDVNMQVKNMSFSAHADAKGILGLIKHCEPKNVMLVHGDVTRMMPLAETIRDQFEIQV 496
Query: 208 YDPANNESMCIP 219
+ PAN E IP
Sbjct: 497 FTPANFELNKIP 508
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 161/236 (68%), Gaps = 10/236 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERM+L+ PIYFS GLT +AN YYK+ I
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIP 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D+PGP V+FATPGML G SL++F+ WA +E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNE 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKF 176
N++ +PGYC+ GT+G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 345 KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVG- 403
Query: 177 LSPQHVILVHGEKP--KMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASD 230
Q+ LV E+ ++ + +++ + +D + M + ++K+ D
Sbjct: 404 ---QNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQEMAMRVYSHLKSVLKD 456
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 162/257 (63%), Gaps = 10/257 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+++CV GGKVLIP FALGRAQE+C+L+D YWE+MNL VP+YF+AG+ +AN Y++ I+
Sbjct: 221 IYECVKNGGKVLIPTFALGRAQEMCLLIDSYWEKMNLSVPVYFTAGMAERANQIYRLYIN 280
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ +++ N F++K + + D+ +ID PGP V+ A+PGML G SL +F +
Sbjct: 281 YTNETIRKKILERNLFEYKYIKSLDKGVIDLPGPMVILASPGMLHSGNSLNLFLKICHDK 340
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N+I +PGYC+ GT+G+K++ G TIE+ DV ++ LAFS H D KGI++L+K
Sbjct: 341 NNMIVIPGYCVRGTVGDKVLKGEKTIEVGKKIYDVNIKVKNLAFSAHADAKGIIELIKQC 400
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P++V+LVHG+K M LK RI++ L I + P N + IP F R +
Sbjct: 401 QPKNVMLVHGDKNCMKNLKARIENNLRITTFAPENGTMVDIPKN----TETEFVFSRDLL 456
Query: 238 NPNFQYLKSGSEEKSVS 254
N LK +K VS
Sbjct: 457 N---GILKENENKKDVS 470
>gi|124505029|ref|XP_001351256.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|3758842|emb|CAB11127.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 1017
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 138/214 (64%), Gaps = 3/214 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FA+GRAQEL ILLDDYW++M + PIYF GLT AN YYK+ S
Sbjct: 361 VHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKIHYPIYFGCGLTENANKYYKIYSS 420
Query: 61 WTSQKV--KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W + E N FDF N+ F + ++ P VLFATPGML G SL+ FK WA +
Sbjct: 421 WINSSCMSNEKENLFDFANISPFLNNYLNEKRPMVLFATPGMLHTGLSLKAFKAWAGNPQ 480
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GT+G+KL+ G I L+GT I V C+I L+FS H D GI L+K +
Sbjct: 481 NLIVLPGYCVQGTVGHKLIMGEKQISLDGTTYIKVLCKIIYLSFSAHADSNGIQQLIKHV 540
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
SP++VI VHGEK M L + I ++ I P+
Sbjct: 541 SPKNVIFVHGEKNGMQKLAKYISNKHMINSMCPS 574
>gi|221482308|gb|EEE20663.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1090
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 142/227 (62%), Gaps = 8/227 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQELC+LL++YWERM+LR PIYF+ G+T +AN YY++ +
Sbjct: 378 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLRFPIYFAGGMTERANAYYRLYVH 437
Query: 61 WTSQKVKETYN-------AFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
W+ + AF F ++ F SL+ AP P VL ATPGML GG +L+ K W
Sbjct: 438 WSKADANVDADPEDALRTAFSFPHILPFQSSLLSAPTPLVLLATPGMLHGGLALKALKAW 497
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMD 172
L+ LPGYC+ GT+G L++G I L+G ++V+C+I ++FS H D GI
Sbjct: 498 GGDPATLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADTTGIQQ 557
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219
L+ P++VILVHGEK MA L I+ + I Y PA +++ IP
Sbjct: 558 LIVNTQPRNVILVHGEKEGMAKLAAVIRRDFNIPVYTPATGQTISIP 604
>gi|221502797|gb|EEE28511.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 1072
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQELC+LL++YWERM+LR PIYF+ G+T +AN YY++ +
Sbjct: 370 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLRFPIYFAGGMTERANAYYRLYVH 429
Query: 61 WTSQKVKETYN-------AFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
W+ + AF F ++ F SL+ AP P VL ATPGML GG +L+ K W
Sbjct: 430 WSKADANVDADPEDALRTAFSFPHILPFQSSLLSAPTPLVLLATPGMLHGGLALKALKAW 489
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMD 172
L+ LPGYC+ GT+G L++G I L+G ++V+C+I ++FS H D GI
Sbjct: 490 GGDPATLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADTTGIQQ 549
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
L+ P++VILVHGEK MA L I+ + I Y PA +++ I
Sbjct: 550 LIVNTQPRNVILVHGEKEGMAKLAAVIRRDFNIPVYTPATGQTISI 595
>gi|237842097|ref|XP_002370346.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
gi|211968010|gb|EEB03206.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
Length = 1089
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQELC+LL++YWERM+LR PIYF+ G+T +AN YY++ +
Sbjct: 370 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLRFPIYFAGGMTERANAYYRLYVH 429
Query: 61 WTSQKVKETYN-------AFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
W+ + AF F ++ F SL+ AP P VL ATPGML GG +L+ K W
Sbjct: 430 WSKADANVDADPEDALRTAFSFPHILPFQSSLLSAPTPLVLLATPGMLHGGLALKALKAW 489
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMD 172
L+ LPGYC+ GT+G L++G I L+G ++V+C+I ++FS H D GI
Sbjct: 490 GGDPATLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADTTGIQQ 549
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
L+ P++VILVHGEK MA L I+ + I Y PA +++ I
Sbjct: 550 LIVNTQPRNVILVHGEKEGMAKLAAVIRRDFNIPVYTPATGQTISI 595
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 138/200 (69%), Gaps = 3/200 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + + GGKVLIP FALGRAQELC+LL+ YW+R + P+YF+AG+ +AN YYK+ ++
Sbjct: 249 VQETIDQGGKVLIPVFALGRAQELCVLLETYWQRTQNQAPVYFAAGMIEKANFYYKLFVN 308
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT++K+K Y N F+FK++ F +SLI A P VLFATPGML G S++VFK W
Sbjct: 309 WTNEKIKSCYLIDNMFNFKHIKPFQKSLIKANMPMVLFATPGMLHAGLSMQVFKEWCYDS 368
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N + +PGYC+AGT+GNKL+SG + L+ DV ++ ++FS H D KGI+ L+K
Sbjct: 369 KNTLIIPGYCVAGTLGNKLLSGCKQVILDKKTYDVNMKVKNMSFSAHADAKGILGLIKHC 428
Query: 178 SPQHVILVHGEKPKMATLKE 197
++V+LVHG+ +M +L E
Sbjct: 429 EAKNVLLVHGDVARMMSLAE 448
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 136/213 (63%), Gaps = 3/213 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V++CV GGKVLIP FA+GRAQEL ILL++YWE+M + PIYF GLT AN YYK+ S
Sbjct: 296 VNECVHKGGKVLIPVFAIGRAQELSILLEEYWEKMKINCPIYFGCGLTENANKYYKIYSS 355
Query: 61 WTSQKV--KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W S E N FDF N+ F + ++ P VLFATPGML G +L+ FK WA +
Sbjct: 356 WISNNCVSTEVKNLFDFSNISQFSNNYLNENRPMVLFATPGMLHTGLALKAFKAWASNPN 415
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GTIG+KL+ G I L+G T I V C+I L+FS H D GI L+K +
Sbjct: 416 NLIILPGYCVQGTIGHKLIMGEKKILLDGSTYIYVNCKIIYLSFSAHADSNGIQQLIKHV 475
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
P++VI VHG+K M L + I ++ I P
Sbjct: 476 MPKNVIFVHGDKNGMEKLSKHISNQYHINSICP 508
>gi|327408312|emb|CCA30123.1| unnamed protein product [Neospora caninum Liverpool]
Length = 1183
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 143/228 (62%), Gaps = 9/228 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQELC+LL++YWERM+L PIYF+ G+T +AN+YY++ +
Sbjct: 499 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLHFPIYFAGGMTERANVYYRLYVH 558
Query: 61 WTSQKV--------KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
W+ + +AF F ++ F SL+ AP P VL ATPGML GG +L+ K
Sbjct: 559 WSKANGSVDAGAGDELPTSAFSFPHILPFQSSLLSAPTPLVLLATPGMLHGGLALKALKA 618
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIM 171
WA + NL+ LPGYC+ GT+G L++G I L+G ++V+C+I ++FS H D GI
Sbjct: 619 WAGDQANLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADSLGIQ 678
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219
L+ P+ V+LVHGEK M L I+ + Y PA +++ IP
Sbjct: 679 QLILNTQPRSVVLVHGEKDGMEKLANVIRRDFNTPVYTPATGQTISIP 726
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 136/213 (63%), Gaps = 3/213 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V++CV GGKVLIP FA+GRAQEL ILL++YWE+M + PIYF GLT AN YYK+ S
Sbjct: 296 VNECVHKGGKVLIPVFAIGRAQELSILLEEYWEKMKINCPIYFGCGLTENANKYYKIYSS 355
Query: 61 WTSQKV--KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W S E N FDF N+ F + ++ P VLFATPGML G +L+ FK WA +
Sbjct: 356 WISNNCVSTEVKNLFDFSNISQFSNNYLNENRPMVLFATPGMLHTGLALKAFKAWASNPN 415
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GTIG+KL+ G I L+G T + V C+I L+FS H D GI L+K +
Sbjct: 416 NLIILPGYCVQGTIGHKLIMGEKKILLDGNTYVYVNCKIIYLSFSAHADSNGIQQLIKHV 475
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
P++VI VHG+K M L + I ++ I P
Sbjct: 476 MPKNVIFVHGDKNGMEKLSKHISNQYHINSICP 508
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 134/214 (62%), Gaps = 3/214 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FA+GRAQEL ILLD YW +M + PIYF GLT AN YY++ S
Sbjct: 301 VHECVHKGGKVLIPVFAIGRAQELSILLDSYWRKMKINYPIYFGCGLTENANKYYRIYSS 360
Query: 61 WTSQKVKET--YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W + T N FDF N+ F + +D P VLFATPGML G SL+ FK WA S
Sbjct: 361 WVNSNCVSTDKKNLFDFANISPFVNNYLDENRPMVLFATPGMLHTGLSLKAFKAWAGSSN 420
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GT+G+KL+ G I +G+ ++V C+I L+FS H D GI L++ +
Sbjct: 421 NLIVLPGYCVQGTVGHKLIMGERKISFDGSSYLNVACRIIYLSFSAHADSNGIQQLIRHV 480
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
PQ+V+ VHGEK M L + I S I P+
Sbjct: 481 LPQNVLFVHGEKNGMEKLSKHISSNYLINSLCPS 514
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 140/224 (62%), Gaps = 6/224 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V+ C+ GGKVLIP FA+GRAQELCILL+ YW RM +R PI+F +T +AN YY++ +
Sbjct: 246 VYSCLKRGGKVLIPVFAIGRAQELCILLEIYWRRMQIRFPIFFGGSMTEKANSYYQLFTN 305
Query: 61 WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
WT+ + + N F F +V +D+S++ GP VLFATPGML G SL+ FK WAP NL
Sbjct: 306 WTNTPLAD--NIFTFPHVLPYDKSILTLSGPAVLFATPGMLHTGLSLQAFKMWAPDSNNL 363
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELE----GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
+PG+C++GTIG+K+++G + ++ T I+VRC + L+FS H D GI L+
Sbjct: 364 TIIPGFCVSGTIGSKIINGAKRVYIDQKDPTTCIEVRCNVKYLSFSSHADSIGIQSLISH 423
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
PQ + VHGE+ M L I SE I + P N +P+
Sbjct: 424 SEPQSIAFVHGERHGMLNLASFINSEFKIPTFCPHNGSITTLPT 467
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 140/224 (62%), Gaps = 6/224 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V+ C+ GGKVLIP FA+GRAQELCILL+ YW RM +R PI+F +T +AN YY++ +
Sbjct: 244 VYSCLKRGGKVLIPVFAIGRAQELCILLEIYWRRMQIRFPIFFGGSMTEKANSYYQLFTN 303
Query: 61 WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
WT+ + + N F F +V +D+S++ GP VLFATPGML G SL+ FK WAP NL
Sbjct: 304 WTNTPLAD--NIFTFPHVLPYDKSILTLSGPAVLFATPGMLHTGLSLQAFKMWAPDSNNL 361
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELE----GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
+PG+C++GTIG+K+++G + ++ T I+VRC + L+FS H D GI L+
Sbjct: 362 TIIPGFCVSGTIGSKIINGAKRVYIDQKDPTTCIEVRCNVKYLSFSSHADSIGIQSLISH 421
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
PQ + VHGE+ M L I SE I + P N +P+
Sbjct: 422 SEPQSIAFVHGERHGMLNLASFINSEFKIPTFCPHNGSITTLPT 465
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 145/223 (65%), Gaps = 6/223 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V +C+ GGKVLIP FA+GRAQELCILL+ +W RM LR PIYF +T ++++YY++ +
Sbjct: 245 VLQCLEKGGKVLIPVFAVGRAQELCILLEFFWRRMQLRYPIYFGGAMTEKSSLYYQLYTN 304
Query: 61 WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
WT+ + + + F F +V +DRS++ GP VLFATPGML G SL+ FK WAP NL
Sbjct: 305 WTNTALSD--DLFSFPHVLPYDRSVLTNTGPAVLFATPGMLHAGLSLQAFKCWAPDPNNL 362
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELE----GTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
+PG+C+AGT+G ++++G I L+ + ID+RC + L+FS H D GI L++
Sbjct: 363 TIIPGFCVAGTLGARIIAGAKRIILDPKDPSSSIDIRCDVKYLSFSSHADSIGIQSLIQH 422
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219
+ P +++ +HGE+ M ++ +Q + I + P N ++ IP
Sbjct: 423 IEPDNIVFLHGERQGMLSMASFVQEQFQIPTFCPHNGSTVSIP 465
>gi|145507230|ref|XP_001439570.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406765|emb|CAK72173.1| unnamed protein product [Paramecium tetraurelia]
Length = 484
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 142/217 (65%), Gaps = 3/217 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + + GGKVLIP FALGRAQEL +LL+ YW+R + +Y++AGL +AN YYK+
Sbjct: 212 VQEVLDRGGKVLIPVFALGRAQELSVLLESYWQRTKCKAGLYYAAGLIEKANQYYKIFTG 271
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
W S+K+++++ N F+FK + FDR+LI +P VL ATPGML GG S++VFK W
Sbjct: 272 WESEKIQQSFLDDNIFNFKYIQPFDRNLIKSPLSMVLLATPGMLHGGLSMQVFKEWCGCA 331
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N + +PGYC+ GT+GNKL++G + ++ D++ QI+ ++FS H D +GI+ LV L
Sbjct: 332 NNSLVIPGYCVPGTLGNKLLAGVKHVRIDNKDYDIKMQINNMSFSAHADSRGIIQLVNHL 391
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
P+ + VHGE +M TL I ++ I+ PAN E
Sbjct: 392 QPKSIAFVHGEYHRMKTLGAEIIDKIQIRVDCPANFE 428
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 133/214 (62%), Gaps = 3/214 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FA+GRAQEL ILLD YW +M + PIYF GLT AN YY++ S
Sbjct: 301 VHECVHKGGKVLIPVFAIGRAQELSILLDSYWRKMKINYPIYFGCGLTENANKYYRIYSS 360
Query: 61 WTSQKVKET--YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W + T N FDF N+ F + + P VLFATPGML G SL+ FK WA S
Sbjct: 361 WVNSSCVSTDKKNLFDFANISPFVNNYLGENRPMVLFATPGMLHTGLSLKAFKAWAGSSK 420
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GT+G+KL+ G I +G + +++ C+I L+FS H D GI L++ +
Sbjct: 421 NLIVLPGYCVQGTVGHKLIMGERKISFDGNSYMNIACKIIYLSFSAHADSNGIQQLIRHV 480
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
PQ+V+ VHGEK M L + I S I P+
Sbjct: 481 LPQNVLFVHGEKNGMEKLSKHISSHYLINSLCPS 514
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 133/214 (62%), Gaps = 3/214 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+CV GGKVLIP FA+GRAQEL ILLD YW++M + PIYF GLT AN YY++ S
Sbjct: 301 VHECVHKGGKVLIPVFAIGRAQELSILLDSYWKKMKINYPIYFGCGLTENANKYYRIYSS 360
Query: 61 WTSQKVKET--YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
W + T N FDF N+ F S + P VLFATPGML G SL+ FK W+
Sbjct: 361 WVNSSCVSTDKKNLFDFANISPFVNSYLGENRPMVLFATPGMLHTGLSLKAFKAWSGCSK 420
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NLI LPGYC+ GT+G+KL+ G I +G T ++V C+I L+FS H D GI L++ +
Sbjct: 421 NLIVLPGYCVQGTVGHKLIMGERKISFDGNTYLNVACRIIYLSFSAHADSNGIQQLIRHV 480
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
PQ+V+ VHGEK M L + I S I P+
Sbjct: 481 LPQNVLFVHGEKHGMEKLSKHIASHYLINSLCPS 514
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 151/242 (62%), Gaps = 4/242 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H C+ GGK LIP FALGRAQE+C++++ YWERM L +P+YF+ G+T +AN YK I+
Sbjct: 222 IHNCIERGGKTLIPIFALGRAQEICLIVESYWERMGLEIPVYFAGGMTEKANEIYKRFIN 281
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ V+E N F+F ++ + R + GPCV+F++PGML G SL +FK+
Sbjct: 282 YTNESVREKILEKNVFEFSHIKPY-RKGSELQGPCVIFSSPGMLHSGTSLRIFKNICSDP 340
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
NL+ LPGYC+ GT+G+++++G+ +E + + ++ +AFS H D GIM ++
Sbjct: 341 RNLVILPGYCVRGTLGDRVLNGSRKERIENEERAINLEVKNIAFSAHADTCGIMKIIDQC 400
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P+ ++LVHGEK +M L++ I++E I Y P N + I + VK +R +
Sbjct: 401 RPKSLMLVHGEKARMKVLQKNIRNEFHIPVYMPPNGVVLSISTNDTVKIYLDKHVLRKYI 460
Query: 238 NP 239
+P
Sbjct: 461 DP 462
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 153/258 (59%), Gaps = 12/258 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V +CV GGKVLIP FALGRA ELC+LLD +WE+ L +PIY SA LT +AN YK I
Sbjct: 225 VVQCVKNGGKVLIPVFALGRAHELCLLLDTHWEKSKLSIPIYTSATLTHKANDIYKQFID 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T + ++ T N FDF++V FD +L GP +LF++PGML G SL +FK W
Sbjct: 285 YTHEHIRNTMHKRNLFDFQHVKQFDSNLASLEGPMILFSSPGMLHSGPSLSIFKKWCGDP 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ PGYC+ GTIG ++++G IE+ G VR ++ + FS H D KGI+ LV+
Sbjct: 345 KNMVIFPGYCVRGTIGERVLNGASQIEVGGIVYPVRMKVKNMPFSAHADQKGILSLVQQC 404
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P+++ILVHG+ +M +K +++ LGI P ++ I + A S
Sbjct: 405 EPENIILVHGDIMRMKRMKNILETTLGIPTLHPPIGATLNIERPKHTTA--------SIT 456
Query: 238 NPNFQYLKSGSEEKSVSG 255
+ +YL+S S K++ G
Sbjct: 457 KESLEYLQS-SNGKTIEG 473
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 2/218 (0%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQEL I+LD YW ++ L+ PIYF GL+ +A YYK+
Sbjct: 296 VHDTLLKGGKVLIPVFAVGRAQELAIILDSYWSKLELKYPIYFGGGLSEKATNYYKLHSC 355
Query: 61 WTSQKVKE--TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
WT++ N F + FD ++ P VLFATPGM+ G SL K WAP+
Sbjct: 356 WTNEHNIPGLNENTFSMSYIQPFDNGYLNENRPMVLFATPGMVHAGLSLRACKLWAPNPN 415
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLS 178
NLI +PGYC+ GT+GNKL+SG I+ I+V+C++ L+FS H D GI+ L + +S
Sbjct: 416 NLIVIPGYCVQGTVGNKLISGEKVIQTSAGPINVKCKVRYLSFSAHADSAGIIQLARQVS 475
Query: 179 PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
P++++LVHGE M + + LG+ + PAN ++
Sbjct: 476 PKNILLVHGESESMKKFSKHLNHILGVPVHCPANGYTV 513
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 151/258 (58%), Gaps = 12/258 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V +CV GGKVLIP FALGRA ELC+LLD +WE+ L +PIY SA LT +AN YK I
Sbjct: 225 VVQCVKNGGKVLIPVFALGRAHELCLLLDTHWEKTKLDIPIYTSATLTHKANDIYKQFID 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T + ++ T N FDF++V FD +L GP +LF++PGML G SL +FK W
Sbjct: 285 YTHEHIRSTLHKRNLFDFRHVKQFDSNLASLEGPMILFSSPGMLHSGPSLSIFKKWCGDP 344
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N++ PGYC+ GTIG ++++G IE+ G VR ++ + FS H D KGI+ LV+
Sbjct: 345 NNMVIFPGYCVRGTIGERVLNGASQIEVGGIVYPVRMKVKNMPFSAHADQKGILALVQQC 404
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P +VILVHG+ +M +K +++ LG+ P ++ I + A S
Sbjct: 405 EPDNVILVHGDIMRMKRMKNILETTLGVPTLHPPIGATINIERPKHTTA--------SIN 456
Query: 238 NPNFQYLKSGSEEKSVSG 255
N YLK ++ K++ G
Sbjct: 457 NETLTYLKE-NKGKTIDG 473
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 141/220 (64%), Gaps = 6/220 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQEL I+L++YW +++ PIYF GL+ +A YYK+ S
Sbjct: 318 VHDTLINGGKVLIPVFAVGRAQELAIILNNYWNNLSISFPIYFGGGLSEKATNYYKLHSS 377
Query: 61 WTSQK----VKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
WT+ ++E N F +N+ FD+S ++ P VLFATPGM+ G SL+ K W+ +
Sbjct: 378 WTNNNSITNLRE--NPFSLRNLLQFDQSFLNDNRPMVLFATPGMVHTGLSLKACKLWSQN 435
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
NLI +PGYC+ GT+GNKL++G TI+ ++++C++ L+FS H D GI+ L+K
Sbjct: 436 PNNLILIPGYCVQGTVGNKLIAGEKTIKTNIGVMNIKCKVRYLSFSAHADSPGILQLIKH 495
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ P++++ VHGE M + I + L I Y P N +++
Sbjct: 496 IRPKNIVFVHGELESMKRFSKHINNTLKIPVYYPCNGQTI 535
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH + GGKVLIP FA+GRAQEL I+L++YW ++L PIYF GL+ +A YYK+ S
Sbjct: 300 VHDTLINGGKVLIPVFAVGRAQELAIILNNYWNNLSLLFPIYFGGGLSEKATNYYKLHSS 359
Query: 61 WTSQ----KVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
WT K+KE N F +N+ FD+S ++ P VLFATPGM+ G SL+ K W+ +
Sbjct: 360 WTDNNNISKLKE--NPFAMENLLQFDQSFLNDNRPMVLFATPGMVHTGLSLKACKIWSSN 417
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPT------------IELEGTKIDVRCQIHQLAFSPH 164
NLI +PGYC+ GT+GNKL+SG I+ I+++C++ L+FS H
Sbjct: 418 PKNLILIPGYCVQGTVGNKLISGTKGREYKIYTATTICIKTNTGVINIKCKVKYLSFSAH 477
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D GI+ L+K + P++++ VHGE M + I S L I Y PAN E++
Sbjct: 478 ADSPGILKLIKHVRPKNIVFVHGELDSMKKFSKHITSTLNIPVYYPANGETVAF 531
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 138/220 (62%), Gaps = 2/220 (0%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V VA GGKVLIP FA+GRAQEL +LL D W R L VPIYFS+ + +A YY++L++
Sbjct: 231 VEDTVAAGGKVLIPTFAMGRAQELLMLLADCWRRKGLTVPIYFSSAMASRALTYYQLLLN 290
Query: 61 WTSQKVKETYNA--FDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
WT+ V++ A + +DRSL+ APGP VLFA+PG +T G SLE F+ WA S
Sbjct: 291 WTNANVRKAVEADVYGMFRTRPWDRSLLQAPGPAVLFASPGNITSGVSLEAFRAWAGSSR 350
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLS 178
NL+ L GY + G G +L + + + VRC++ LAFS H D +G+M LV+
Sbjct: 351 NLVVLAGYQVRGEWGGRLTNRSWSQAHAHAHAQVRCRVKMLAFSAHADLRGLMGLVRRCR 410
Query: 179 PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+ V+LVHG++ M L+ RI++ LGI+C+ P ++ +
Sbjct: 411 PRAVVLVHGQREPMEFLRGRIEATLGIECHAPPTGSTVTL 450
>gi|85000301|ref|XP_954869.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303015|emb|CAI75393.1| hypothetical protein, conserved [Theileria annulata]
Length = 663
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 144/228 (63%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ + GGKVLIP FA+GRAQEL I+L++YW ++L PIYF GL+ +A YYK+ S
Sbjct: 318 VHETLINGGKVLIPVFAVGRAQELAIILNNYWNNLSLSFPIYFGGGLSEKATNYYKLHSS 377
Query: 61 WTSQ----KVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
WT+ ++E N F +N+ FD+S ++ P VLFATPGM+ G SL+ K W+ +
Sbjct: 378 WTNNNNITNLRE--NPFSLRNLLQFDQSFLNDNRPMVLFATPGMVHTGLSLKACKLWSQN 435
Query: 117 EMNLITLPGYCLAGTIGNKLMSGN--------PTIELEGTKIDVRCQIHQLAFSPHTDGK 168
NLI +PGYC+ GT+GNKL++GN +I+ ++++C++ L+FS H D
Sbjct: 436 PSNLILIPGYCVQGTVGNKLIAGNESQYQYREKSIKTNIGVMNIKCKVRYLSFSAHADSP 495
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
GI+ L+K + P++++ VHGE M + I S L I Y P+N +++
Sbjct: 496 GILQLIKHIRPKNIVFVHGELESMKRFSKHINSTLKIPVYYPSNGQTI 543
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH C+ GGKVLIP FA+GRAQEL I+LD YW ++ LR PIYF GL+ +A YYK+
Sbjct: 317 VHDCLLAGGKVLIPVFAVGRAQELAIILDTYWSKLQLRFPIYFGGGLSERATSYYKLHSL 376
Query: 61 WTSQKVKETY--NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
WT + N F +++ F+ S + P VLFATPGM+ G SL+ K WAP+
Sbjct: 377 WTDSRNIPNMGDNCFSLEHMLPFENSFLTEDRPMVLFATPGMVHSGLSLKACKLWAPNPK 436
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF-- 176
NLI +PGY + GT GNKL+SG I+ +V+C++ L+FS H D GIM L+K
Sbjct: 437 NLIVVPGYAVQGTPGNKLISGEKVIKTSSGSFEVKCKVRYLSFSAHADSAGIMRLIKHTK 496
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ P++++LVHGE M + + ++ I + PAN + + +
Sbjct: 497 VQPKNLVLVHGEYDGMKKFAKHVNMDVNIPVFHPANGQEIAV 538
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 18/222 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM----LISWTS 63
GGKVLIP FA+GRAQEL I+L+ +W+R+NL PIYF+ G++ +A+ YYK+ L+
Sbjct: 285 GGKVLIPVFAVGRAQELAIILECFWKRVNLNYPIYFAGGMSERASTYYKLHSYALMDLDG 344
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
Q + T + FD I+ P VLFATPGML GG SL V K WAP NLI +
Sbjct: 345 QLFESTL-------ISAFDHDFINEKRPMVLFATPGMLNGGLSLSVCKAWAPDPHNLIII 397
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD-------LVKF 176
PGYC+ GT+GN+L+ G I+ ID++C+I L+FS H D GI ++ +
Sbjct: 398 PGYCIQGTVGNRLIMGEKLIKTVNGVIDIKCKIRYLSFSAHADSAGIQQFINHVSLIITY 457
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ P+++ILVHGE+ + I+SE GI + P +S+ I
Sbjct: 458 IRPKNIILVHGERDGIQKFARHIKSEFGIPVFCPQTGQSITI 499
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VHK + GGKVLIP FALGRAQE+C+LL +Y ER+ L VPIYF+ GL + N Y S
Sbjct: 223 VHKTIDIGGKVLIPIFALGRAQEICLLLKNYCERIQLSVPIYFTTGLIDKINDIYLKFAS 282
Query: 61 WTSQKVKE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+T++ +++ + + K V F++ +++PGP ++FATP ML G SL +FK
Sbjct: 283 YTNESLEQPLKIRSILNSKFVKPFEKEYLNSPGPMIIFATPAMLINGPSLNIFKSICHDS 342
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N I LPGYC GTIG K+++G IE+ D+ +++ ++ S H D GI+ +++
Sbjct: 343 KNTIILPGYCSKGTIGEKIINGLKRIEIGKNIYDINMKVYNISLSGHADMTGILKIIEQC 402
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237
P +V+LVHG+K KM LKE+I+ E I Y P N + IP+ + FI+ +
Sbjct: 403 KPSNVMLVHGDKGKMNILKEKIKVEFDIPVYYPPNYTLIEIPTNKKIPISIEKNFIQKFV 462
Query: 238 N 238
N
Sbjct: 463 N 463
>gi|14165488|gb|AAH08041.1| CPSF3L protein [Homo sapiens]
gi|18044933|gb|AAH20199.1| CPSF3L protein [Homo sapiens]
Length = 389
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 118/154 (76%), Gaps = 4/154 (2%)
Query: 25 CILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDFKNVHNF 81
CILL+ +WERMNL+VPIYFS GLT +AN YYK+ I WT+QK+++T+ N F+FK++ F
Sbjct: 129 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 188
Query: 82 DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNP 141
DR+ D PGP V+FATPGML G SL++F+ WA +E N++ +PGYC+ GT+G+K++SG
Sbjct: 189 DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQR 248
Query: 142 TIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLV 174
+E+EG ++ +V+ Q+ ++FS H D KGIM LV
Sbjct: 249 KLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 282
>gi|7020719|dbj|BAA91246.1| unnamed protein product [Homo sapiens]
Length = 292
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 176/337 (52%), Gaps = 53/337 (15%)
Query: 73 FDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTI 132
F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E N++ +PGYC+ GT+
Sbjct: 2 FEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTV 61
Query: 133 GNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPK 191
G+K++SG +E+EG ++ +V+ Q+ ++FS H D KGIM LV P+ V+LVHGE K
Sbjct: 62 GHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKK 121
Query: 192 MATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEK 251
M LK++I+ EL + CY PAN E++ +P++ + G S ++ M
Sbjct: 122 MEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREM-------------- 167
Query: 252 SVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCP 311
+G LP K R+ G L++ K ++V ++ L LG H+++F C
Sbjct: 168 -------AQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRFT--CR 216
Query: 312 VNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQDFGEHLQVESFHL 371
V++ + K T+L S L +L + L +G++ VE
Sbjct: 217 VHLHDTRKEQETALRVY---------SHLKSVLKDHCVQHLPDGSV-------TVE---- 256
Query: 372 SVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLA 408
SV L+ P + P T +W+ D++L
Sbjct: 257 SVLLQAAAP-------SEDPGTKVLLVSWTYQDEELG 286
>gi|14198352|gb|AAH08240.1| Cpsf3l protein [Mus musculus]
Length = 302
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 148/254 (58%), Gaps = 26/254 (10%)
Query: 73 FDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTI 132
F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E N++ +PGYC+ GT+
Sbjct: 2 FEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTV 61
Query: 133 GNKLMSGNPTIELEGTK-IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPK 191
G+K++SG +E+EG + ++V+ Q+ ++FS H D KGIM LV P+ V+LVHGE K
Sbjct: 62 GHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKK 121
Query: 192 MATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEK 251
M L+++I+ E + CY PAN E++ +P++ + G S ++ M
Sbjct: 122 MEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREM-------------- 167
Query: 252 SVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCP 311
+G LP K R+ G L++ K ++V ++ L LG H+++F C
Sbjct: 168 -------VQGLLP-EAKKPRLLHGTLIM-KDSNFRLVSSEQALKELGLAEHQLRF--TCR 216
Query: 312 VNVDELEKFTTTSL 325
V++ + K T+L
Sbjct: 217 VHLQDTRKEQETAL 230
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 139/235 (59%), Gaps = 12/235 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + VA GGKVLIP FA+GRAQEL +L+ D WER L+VPIYFS+ + +A +YY++L++
Sbjct: 246 VVETVAAGGKVLIPTFAMGRAQELLMLITDCWERNGLQVPIYFSSAMAARALVYYQLLLN 305
Query: 61 WTSQKVKETYNAFDFKNV------HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
WT+ F NV H ++ APGP +LFA+PG + G +LE F+ WA
Sbjct: 306 WTNANHIHCV----FVNVHICVCTHIHTTWMMLAPGPALLFASPGNIASGVALEAFRSWA 361
Query: 115 PSEMNLITLPGYCLAGTIG--NKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
S NL+ L GY + G G N + +++VRC+I LAFS H D +G++
Sbjct: 362 GSSKNLLVLAGYQVRGGAGHDNLCGGRSGGRSGGERRVEVRCRIKMLAFSAHADLRGLLG 421
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAG 227
LV+ P+ V+LVHG++ M L+ RI++ +GI+C+ PA ++ I V G
Sbjct: 422 LVRRCKPRAVVLVHGQREPMEFLRGRIETHVGIECHAPATGTTVTIAPRRAVPLG 476
>gi|390367057|ref|XP_784887.2| PREDICTED: integrator complex subunit 11-like, partial
[Strongylocentrotus purpuratus]
Length = 355
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 31/205 (15%)
Query: 33 ERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDFKNVHNFDRSLIDAP 89
ERMNL+ PIYFS GLT +AN YYK+ I+WT+QK+K+T+ N F+F+++ FDR I P
Sbjct: 173 ERMNLKAPIYFSTGLTERANHYYKLFITWTNQKIKKTFVKRNLFEFQHIKPFDRGYIHNP 232
Query: 90 GPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK 149
GP V+FATPGML G SL++FK WA E N+
Sbjct: 233 GPMVVFATPGMLHSGLSLQIFKQWASGEKNI----------------------------H 264
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYD 209
IDV+ + ++FS H D KGIM L++ P++V+LVHGE KMA LK++I E I C+
Sbjct: 265 IDVKLSVQYMSFSAHADAKGIMQLIRMCEPKNVVLVHGEAGKMAFLKDKICKEFKIDCFM 324
Query: 210 PANNESMCIPSTHYVKAGASDAFIR 234
PAN ES+ IP + A S ++
Sbjct: 325 PANGESINIPCKTNLMADVSLGLLK 349
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 98/124 (79%), Gaps = 3/124 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 203 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 262
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 263 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 322
Query: 118 MNLI 121
N++
Sbjct: 323 KNMV 326
>gi|9280039|dbj|BAB01576.1| unnamed protein product [Macaca fascicularis]
Length = 328
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 101/134 (75%), Gaps = 5/134 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 161 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 220
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V+FATPGML G SL++F+ WA +E
Sbjct: 221 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE 280
Query: 118 MNLITLPGYCLAGT 131
N++ C GT
Sbjct: 281 KNMVR--ARCGVGT 292
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 134/240 (55%), Gaps = 22/240 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V GG+ LIP FALGRAQEL ++LDDYW+ + RVPIY+++ L + YK
Sbjct: 265 IHDVVDRGGRCLIPVFALGRAQELLLILDDYWQNHDELHRVPIYYASALARRCMAVYKTY 324
Query: 59 ISWTSQKVKETY---NAFDFK------NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ + +++T N F+F+ N+H FD GPCV+ A+PGML G S E+
Sbjct: 325 VNVMKESIQKTISINNPFNFRHVSYIRNLHQFDGEY--GGGPCVMLASPGMLQSGLSREI 382
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKIDVRCQIHQLAFSPHTDGK 168
F+ WA ++ N + L GY + GT+ L+ + E G KID C I ++FS H D
Sbjct: 383 FERWASNKANCVLLAGYVVNGTLAKDLLKAPKKVTSEAGHKIDRECDIAYISFSAHVDYA 442
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESMCIPSTHY 223
D ++ L P H++LVHGEK +M K +I ++L +DP N E++ + HY
Sbjct: 443 QNRDFIRALDPTHIVLVHGEKHEMGRFKMQITTDLEADQKTASVFDPRNAETVLL---HY 499
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 109/159 (68%), Gaps = 16/159 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
WT+QK+++T+ N F+FK++ FDR+ D PGP V GG L++ + WA E
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMV-------GEGGPWLDLVQAWAGEE 337
Query: 118 MNLIT------LPGYCLAGTIGNKLMSGNPTIELEGTKI 150
T +PGYC+ GT+G+K++SG +E+EG +I
Sbjct: 338 EGAATFCPQVIMPGYCVQGTVGHKILSGQRKLEMEGRQI 376
>gi|71661559|ref|XP_817799.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70883012|gb|EAN95948.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 625
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 15/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 113 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 172
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+S + +VK+ + N F FK +H+ RS D GPCV+ A+PGML G SLE+F+
Sbjct: 173 VSAMNDRVKQQHANHRNPFVFKYIHSLMETRSFEDT-GPCVVLASPGMLQSGISLELFER 231
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGI 170
W N I + GYC+ GTI +++ + + +G + +R + I ++FS H+DG+
Sbjct: 232 WCGDRRNGIIIAGYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQT 291
Query: 171 MDLVKFL-SPQHVILVHGEKPKMATLKERIQ---SELGIKCYDPANNESMCIP 219
D ++ L QHVILVHG M L+ ++Q +E G+K Y N E++ IP
Sbjct: 292 RDFIQALPKTQHVILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIP 344
>gi|407851025|gb|EKG05159.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 762
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 15/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 250 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 309
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+S + +VK+ + N F FK +H+ RS D GPCV+ A+PGML G SLE+F+
Sbjct: 310 VSAMNDRVKQQHANHRNPFVFKYIHSLMETRSFEDT-GPCVVLASPGMLQSGISLELFER 368
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGI 170
W N I + GYC+ GTI +++ + + +G + +R + I ++FS H+DG+
Sbjct: 369 WCGDRRNGIIIAGYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQT 428
Query: 171 MDLVKFL-SPQHVILVHGEKPKMATLKERIQ---SELGIKCYDPANNESMCIP 219
D ++ L QHVILVHG M L+ ++Q +E G+K Y N E++ IP
Sbjct: 429 RDFIQALPKTQHVILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIP 481
>gi|50363261|gb|AAT75333.1| cleavage polyadenylation specificity factor CPSF73 [Trypanosoma
cruzi]
Length = 762
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 15/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 250 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 309
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+S + +VK+ + N F FK +H+ RS D GPCV+ A+PGML G SLE+F+
Sbjct: 310 VSAMNDRVKQQHANHRNPFVFKYIHSLMETRSFEDT-GPCVVLASPGMLQSGISLELFER 368
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGI 170
W N I + GYC+ GTI +++ + + +G + +R + I ++FS H+DG+
Sbjct: 369 WCGDRRNGIIIAGYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQT 428
Query: 171 MDLVKFL-SPQHVILVHGEKPKMATLKERIQ---SELGIKCYDPANNESMCIP 219
D ++ L QHVILVHG M L+ ++Q +E G+K Y N E++ IP
Sbjct: 429 RDFIQALPKTQHVILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIP 481
>gi|407411604|gb|EKF33594.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 763
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 15/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 251 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 310
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+S + +VK+ + N F FK +H+ RS D GPCV+ A+PGML G SLE+F+
Sbjct: 311 VSAMNDRVKQQHANHRNPFVFKYIHSLMETRSFEDT-GPCVVLASPGMLQSGISLELFER 369
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGI 170
W N I + GYC+ GTI +++ + + +G + +R + I ++FS H+DG+
Sbjct: 370 WCGDRRNGIIIAGYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQT 429
Query: 171 MDLVKFL-SPQHVILVHGEKPKMATLKERIQ---SELGIKCYDPANNESMCIP 219
D ++ L QHVILVHG M L+ ++Q +E G+K Y N E++ IP
Sbjct: 430 RDFIQALPKTQHVILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIP 482
>gi|393912282|gb|EJD76666.1| cleavage and polyadenylation specific factor 3 [Loa loa]
Length = 475
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 136/230 (59%), Gaps = 15/230 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIPAFALGRAQEL ++LD+YWE L+ +P+Y+++ L + Y+
Sbjct: 11 VHEVVGRGGRCLIPAFALGRAQELLLILDEYWEAHPELQDIPVYYASSLAKKCMAVYQTF 70
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + ++++ N F FK+V N +S+ + GPCV+ A+PGML G S E+F++W
Sbjct: 71 VSGMNSRIQKQIALNNPFVFKHVSNL-KSIDHFEDVGPCVVLASPGMLQNGLSRELFENW 129
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
N + GYC+ GT+ ++S + + G K+ +R Q+ ++FS HTD D
Sbjct: 130 CTDSKNGCIIAGYCVEGTLAKHILSEPEEIVAMNGQKLAMRLQVAYISFSAHTDYTQTSD 189
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
++ L P H++LVHGE +M LK I +S+ I+ Y+P N ES+
Sbjct: 190 FIRALRPPHLVLVHGEMNEMNRLKAAIIRQYEDESDFHIEVYNPRNTESV 239
>gi|342180524|emb|CCC90000.1| putative cleavage and polyadenylation specificity factor subunit
[Trypanosoma congolense IL3000]
Length = 766
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 137/232 (59%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ LIP FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 250 VHDVVKGGGRCLIPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 309
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VKE + N F FK + + D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 310 VSAMNDRVKEQHENHRNPFVFKYIQSLLDTRSFEDTGPCVVLASPGMLQSGISLELFERW 369
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
+ N I + GYC+ GTI +++S I + +G + +R + + ++FS H+DG+
Sbjct: 370 CGDKRNGIIVAGYCVDGTIAKEILSKPKEITKPDGKVLPLRMRTVQSVSFSAHSDGRQTR 429
Query: 172 DLVKFL-SPQHVILVHGEKPKMATLKERIQ---SELGIKCYDPANNESMCIP 219
D ++ L + +HVILVHG M LK ++Q +E G+K Y N E++ IP
Sbjct: 430 DFIQALPNTKHVILVHGNIGAMGQLKNKLQQDFAERGMKVYATKNQEAVRIP 481
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIPAFALGRAQEL ++LD+YWE L+ +P+Y+++ L + Y+
Sbjct: 230 VHEIVGRGGRCLIPAFALGRAQELLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTF 289
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+S + ++++ N F FK+V N + GPCV+ A+PGML G S E+F++W
Sbjct: 290 VSGMNSRIQKQIALNNPFVFKHVSNLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWC 349
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ ++S + + G K+ +R Q+ ++FS HTD D
Sbjct: 350 TDSKNGCIIAGYCVEGTLAKHILSEPEEIVAMNGQKLAMRLQVAYISFSAHTDYTQTSDF 409
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
++ L P H++LVHGE +M LK I +S+ I+ Y+P N ES+
Sbjct: 410 IRALRPPHLVLVHGEMNEMNRLKAAIIRQYEDESDFHIEVYNPRNTESV 458
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIPAFALGRAQEL ++LD+YWE L+ +P+Y+++ L + Y+
Sbjct: 224 VHEIVGRGGRCLIPAFALGRAQELLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTF 283
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+S + ++++ N F FK+V N + GPCV+ A+PGML G S E+F++W
Sbjct: 284 VSGMNSRIQKQIALNNPFVFKHVSNLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWC 343
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ ++S + + G K+ +R Q+ ++FS HTD D
Sbjct: 344 TDSKNGCIIAGYCVEGTLAKHILSEPEEIVAMNGQKLAMRLQVAYISFSAHTDYTQTSDF 403
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
++ L P H++LVHGE +M LK I +S+ I+ Y+P N ES+
Sbjct: 404 IRALRPPHLVLVHGEMNEMNRLKAAIIRQYEDESDFHIEVYNPRNTESV 452
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 251 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 310
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VK+ + N F FK + + D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 311 VSAMNDRVKKQHENHRNPFVFKYIQSLLDTRSFEDTGPCVVLASPGMLQSGISLELFERW 370
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
+ N I + GYC+ GTI ++S I + +G + +R + I ++FS H+DG+
Sbjct: 371 CGDKRNGIIVAGYCVDGTIAKDILSKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTR 430
Query: 172 DLVKFL-SPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
D ++ L +HVILVHG M LK ++Q + G++ Y N E++ IP
Sbjct: 431 DFIQALPKTKHVILVHGNVGAMGQLKNKLQQDFADRGVQVYATKNQEAIRIP 482
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 251 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 310
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VK+ + N F FK + + D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 311 VSAMNDRVKKQHENHRNPFVFKYIQSLLDTRSFEDTGPCVVLASPGMLQSGISLELFERW 370
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
+ N I + GYC+ GTI ++S I + +G + +R + I ++FS H+DG+
Sbjct: 371 CGDKRNGIIVAGYCVDGTIAKDILSKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTR 430
Query: 172 DLVKFL-SPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
D ++ L +HVILVHG M LK ++Q + G++ Y N E++ IP
Sbjct: 431 DFIQALPKTKHVILVHGNVGAMGQLKNKLQQDFADRGVQVYATKNQEAIRIP 482
>gi|70926510|ref|XP_735783.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56509750|emb|CAH82972.1| hypothetical protein PC300249.00.0 [Plasmodium chabaudi chabaudi]
Length = 258
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 111/192 (57%), Gaps = 7/192 (3%)
Query: 40 PIYFSAGLTIQANMYYKMLISWTSQKV--KETYNAFDFKNVHNFDRSLIDAPGPCVLFAT 97
PIYF GLT AN YYK+ SW + E N FDF N+ F + ++ P VLFAT
Sbjct: 1 PIYFGCGLTENANKYYKIYSSWINNDCVSTELKNLFDFSNISQFSNNYLNENRPMVLFAT 60
Query: 98 PGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQI 156
PGML G +L+ FK WA + NLI LPGYC+ GTIG+KL+ G I L+G T I V C+I
Sbjct: 61 PGMLHTGLALKAFKAWASNPNNLIILPGYCVQGTIGHKLIMGEKKILLDGSTYIYVNCKI 120
Query: 157 HQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE-- 214
L+FS H D GI L+K + P++VI VHG+K M L + I ++ I P +
Sbjct: 121 IYLSFSAHADSNGIQQLIKHVMPKNVIFVHGDKNGMEKLSKHISNQYHINSICPYMGQNC 180
Query: 215 --SMCIPSTHYV 224
+ C S +YV
Sbjct: 181 QFNFCKYSINYV 192
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 15/235 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW++ VPIY+++ L + +K
Sbjct: 238 VHTIVQRGGRCLIPVFALGRAQELLLILDEYWQQHPELHNVPIYYASALAKRCMGVFKAF 297
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F F+ +HN + D G V+ ATPGML G S E+F+ WA
Sbjct: 298 VNMMNPKIQQQMKISNPFQFQFIHNLRKLDEFDDHGSSVVLATPGMLQNGLSRELFERWA 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
P+ N + L GY + GT+ ++L+ I + G + C I ++F+ H D D
Sbjct: 358 PNRHNGVILAGYHVEGTLAHELLKQPRQIRSMAGGTVPRNCTIANISFNAHVDSIQNRDF 417
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI-----QSELGIKCYDPANNESMCIPSTHY 223
+ L PQH++LVHG++ +M LKE + Q + I Y+P N E HY
Sbjct: 418 IGELEPQHLVLVHGQESQMRKLKESVLKDFEQRDRLISVYNPKNTEKQLF---HY 469
>gi|32566029|ref|NP_502553.2| Protein CPSF-3 [Caenorhabditis elegans]
gi|26985920|emb|CAC44310.2| Protein CPSF-3 [Caenorhabditis elegans]
Length = 707
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 12/228 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFA+G AQEL ++LD+YWE +P+Y+++ L + Y+
Sbjct: 227 VHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTF 286
Query: 59 ISWTSQKVKETY---NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + ++++ N F FK+V + GPCV+ ATPGML GFS E+F+ W
Sbjct: 287 VNGMNSRIQKQIAVKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWC 346
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
P N + GYC+ GT+ ++S + L G K+ +R Q+ ++FS HTD +
Sbjct: 347 PDTKNGCIIAGYCVEGTLAKHILSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSNF 406
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE-----LGIKCYDPANNESM 216
VK L P H++LVHGE +M+ LK I+ + + I+ ++P N E +
Sbjct: 407 VKALKPPHLVLVHGELHEMSRLKSGIERQFQDDNIPIEVHNPRNTERL 454
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNRGGRSLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS + + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEIVTMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
V+ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FVRALKPPHVILVHGEQNEMARLKAALIREYEDNEEVDIEVHNPRNTEAVTL 463
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
V+ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTL 463
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
V+ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTL 463
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 143/269 (53%), Gaps = 26/269 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+VL+P FALGRAQEL ++LD+YW LR VPIY+++ L + Y+
Sbjct: 204 VHTTVRNGGRVLMPVFALGRAQELLLILDEYWHSHAELRSVPIYYASSLARKCMAVYQTY 263
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+++ + N F F+ + + RS+ D GP V+ A+PGML G S + + W
Sbjct: 264 INMMNDKIRKAFAERNPFIFRYIKSL-RSIDKFDDIGPSVILASPGMLQNGVSRTLLERW 322
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNP--TIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
AP N + L GY + GT+ KL++ P L G KI R + +L+F+ H D
Sbjct: 323 APDARNTLLLTGYSVEGTMA-KLIANEPIEITTLSGQKIPRRMTVEELSFAAHVDYIQNS 381
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESMCIPSTHYVKA 226
+ + ++P H+ILVHGE+ LK + S ++ +K Y+P N C+P + K
Sbjct: 382 EFIDAVNPDHIILVHGEQTNTGRLKSALMSKYHNKKMDVKVYNPKN----CVPLELHFKG 437
Query: 227 GASDAFIRSCMNPNFQYLKSGSEEKSVSG 255
D +++ N +K E VSG
Sbjct: 438 ---DRIVKALGNI---AIKKAKENDIVSG 460
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGEK +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEKNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 130/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + ++
Sbjct: 235 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTY 294
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+K+ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 295 VNAMNDKIKKQIAISNPFVFKHISNLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWC 354
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ LMS ++ + G KI +C + ++FS HTD + +
Sbjct: 355 TDRRNGVIIAGYCVEGTLAKNLMSEPEEVQTMSGQKIPRKCSVDYISFSAHTDFEQTSEF 414
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
++ L P H++LVHGE+ +M LK + +SE+ + ++P N +S+
Sbjct: 415 IRILKPPHIVLVHGEQNEMGRLKAALIREYEDKSEVSLVVHNPPNCQSV 463
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+ LIP FALGRAQEL ++LDDYW + +PIY+++ L + Y+
Sbjct: 234 IHTIINRGGRCLIPVFALGRAQELLLILDDYWSQHPELHDIPIYYASSLAKKCMAVYQTY 293
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F F+++HN D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 294 VNAMNDKIRRQIAINNPFIFRHIHNLKGIDHFDDIGPCVVMASPGMMQSGLSRELFELWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ +++S + L G K+ ++ + ++FS HTD K +
Sbjct: 354 TDSKNGVIIAGYCVEGTLAKQILSEPEEIVTLSGQKLPLKMSVDYISFSAHTDYKQTSEF 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
V+ L P HV+LVHGE+ +M LK ++ E I+ ++P N ++
Sbjct: 414 VRALKPPHVVLVHGEQNEMNRLKAALKREYEDDPNTSIEIHNPRNTTAV 462
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD+YW + +PIY+++ L + Y+
Sbjct: 234 VQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPDLHEIPIYYASSLAKKCMAVYQTY 293
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 294 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFESWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 354 TDPKNGVIIAGYCVEGTLAKTILSEPEEIITLSGQKLPLNMSVDYISFSAHTDYQQTSEF 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 414 IRLLRPNHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 462
>gi|335775092|gb|AEH58456.1| cleavage and polyadenylation specificity facto subunit 3-like
protein, partial [Equus caballus]
Length = 499
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 41 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 100
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 101 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 159
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 160 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 219
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 220 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 271
>gi|444731702|gb|ELW72051.1| Cleavage and polyadenylation specificity factor subunit 3 [Tupaia
chinensis]
Length = 587
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 129 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 188
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 189 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 247
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 248 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 307
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 308 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 359
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 192 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHEIPIYYASSLAKKCMAVYQTY 251
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 252 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 310
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 311 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 370
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 371 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 422
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 233 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ ++K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNEKIRKQISVSNPFVFKHISNLKGMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ +MS I + G KI ++C + ++FS HTD + D
Sbjct: 353 TDRRNGCIIAGYCVEGTLAKHIMSEPEEITTMSGQKIPLKCSVDYISFSAHTDYQQTSDF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE------LGIKCYDPANNESM 216
++ L P HV+LVHGE +M+ LK + E + I+ ++P N +++
Sbjct: 413 IRQLKPPHVVLVHGEANEMSRLKAAVIREYEDDPDVNIEVHNPKNTQAV 461
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 209 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 268
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 269 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 327
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 328 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 387
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 388 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 439
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 189 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 248
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 249 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 307
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 308 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 367
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 368 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 419
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 189 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 248
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 249 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 307
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 308 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 367
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 368 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 419
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 190 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 249
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 250 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 308
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 309 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 368
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 369 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 420
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 230 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 289
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 290 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 348
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 349 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 408
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 409 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 460
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 263 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 322
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 323 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 381
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 382 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 441
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 442 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 493
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 189 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 248
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 249 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 307
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 308 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 367
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 368 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 419
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 223 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 282
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 283 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 341
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 342 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 401
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 402 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 453
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 256 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 315
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 316 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 374
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 375 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 434
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 435 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 486
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 213 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 272
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 273 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 331
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 332 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 391
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 392 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 443
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 243 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 302
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 303 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 361
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 362 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 421
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 422 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 473
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 121/209 (57%), Gaps = 7/209 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + +PIY+++ L + Y+
Sbjct: 236 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTY 295
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 296 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFDDIGPCVVMASPGMMQSGLSRELFESWC 355
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 356 TDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLSLKMSVDYISFSAHTDYQQTSEF 415
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE 202
++ L P HVILVHGE+ +M+ LK +Q E
Sbjct: 416 IRILKPPHVILVHGEQNEMSRLKAALQRE 444
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 133/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VHAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 259 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 318
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 319 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 377
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 378 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 437
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 438 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 489
>gi|149641381|ref|XP_001505542.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Ornithorhynchus anatinus]
Length = 595
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 137 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 196
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 197 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 255
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 256 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 315
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + ++ I+ ++P N E++ +
Sbjct: 316 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDDVHIEVHNPRNTEAVTL 367
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 288 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 347
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 348 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 406
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 407 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 466
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 467 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 518
>gi|308492421|ref|XP_003108401.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
gi|308249249|gb|EFO93201.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
Length = 712
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 12/228 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFA+G AQEL ++LD+YWE +P+Y+++ L + Y+
Sbjct: 227 VHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTF 286
Query: 59 ISWTSQKVKETY---NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + ++++ N F FK+V + GPCV+ ATPGML GFS E+F++W
Sbjct: 287 VNGMNSRIQKQIAVKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFENWC 346
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ +++ + L G K+ +R Q+ ++FS HTD +
Sbjct: 347 SDSKNGCIIAGYCVEGTLARHILTEPEEIVSLSGEKLPMRMQVGYVSFSAHTDFNQTSNF 406
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE-----LGIKCYDPANNESM 216
VK L P H++LVHGE +M+ LK I+ + + I+ ++P N E +
Sbjct: 407 VKALKPPHLVLVHGELHEMSRLKAGIERQFQDANIPIEVHNPRNTERL 454
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 131/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 445 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 504
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 505 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 564
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 565 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 624
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 625 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 675
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 131/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 300 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 359
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 360 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 419
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 420 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 479
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 480 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 530
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 175 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 234
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 235 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 293
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 294 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 353
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HV+LVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 354 FIRALKPPHVVLVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 405
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
VH V GGK L+P FALGRAQEL ++LD++WE +PIY+++ L + Y+
Sbjct: 252 VHDIVMRGGKCLLPVFALGRAQELLLILDEFWESKPALHNIPIYYASSLARKCMAIYQTY 311
Query: 59 ISWTSQKVKETY---NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ +++++ + N F FK++ + S ID GP V+ A+PGML G S ++F+ W
Sbjct: 312 INQMNERIRRQFAISNPFMFKHIASIKSASEIDQSGPMVMMASPGMLQNGLSRDLFEQWC 371
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
P N + + GY + GT+ ++S + L G K+ +R + ++FS H D +
Sbjct: 372 PDSRNGVIVTGYSVEGTLAKSILSAPKEVPSLTGQKLPLRMSVTYVSFSAHADFAQTSEF 431
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
+ L P H++LVHGE +M LK + +E+ I+ + PAN +S+
Sbjct: 432 IDALKPPHIVLVHGEATEMGRLKAALTRKYEDHAEIKIEVHTPANAQSV 480
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA L+ + E+ I+ ++P N E++ +
Sbjct: 405 FIRALKPPHVILVHGEQNEMARLRAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 131/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 345
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 346 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 405
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +PIY+++ L + Y+
Sbjct: 234 VQKIVMQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 293
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 294 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFESWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 354 TDPKNGVIIAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 414 IRMLRPNHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 462
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 133/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 463
>gi|2394306|gb|AAB70268.1| 73 kDA subunit of cleavage and polyadenylation specificity factor
[Homo sapiens]
Length = 379
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 130/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ PIY+++ L + Y+
Sbjct: 107 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELXDXPIYYASSLAKKCMAVYQTY 166
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 167 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 226
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 227 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 286
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 287 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 337
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 209 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMSVYQTY 268
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP ++ A+PGM+ G S E+F+ W
Sbjct: 269 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSIVMASPGMMQSGLSRELFESW 327
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 328 CTDKRNGVIIAGYCVEGTLAKHVMSEPEEITTMSGQKLPMKMSVDYISFSAHTDYQQTSE 387
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 388 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 439
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +PIY+++ L + Y+
Sbjct: 234 VQKIVMQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 293
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 294 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFESWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 354 TDPKNGVIIAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 414 IRMLRPNHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 462
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 131/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWC 345
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 346 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYVSFSAHTDYQQTSEF 405
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|443713763|gb|ELU06463.1| hypothetical protein CAPTEDRAFT_141423, partial [Capitella teleta]
Length = 369
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 13/227 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+ V GG+ LIP FALGRAQEL ++LD+YW + +PIY+++ L + Y+
Sbjct: 7 ISDIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELQDIPIYYASSLAKKCMSVYQTY 66
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K+K T N F FK++ N S D GP V+ A+PGM+ G S E+F++W
Sbjct: 67 INAMNDKIKRQINTNNPFVFKHISNLKASSHFDDIGPSVVMASPGMMQSGLSRELFENWC 126
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + GYC+ GT+ ++S + + G K+ ++C + ++FS HTD K +
Sbjct: 127 TDKRNGCIIAGYCVEGTLAKHILSEPEEIVTMGGQKLPLKCSVDYISFSAHTDYKQTSEF 186
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNE 214
V+ L P H++LVHGE +M LK + E I ++P N E
Sbjct: 187 VRILKPTHIVLVHGEANEMGRLKAALIREYEDDPEYNIDIFNPRNTE 233
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 45/292 (15%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCIPSTHYVKA 226
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL-------- 463
Query: 227 GASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILV 278
NF+ K S++ KC++G +RV+ GILV
Sbjct: 464 -------------NFRGEKLAKVMGSLADKKCSQG--------QRVS-GILV 493
>gi|268552491|ref|XP_002634228.1| Hypothetical protein CBG01798 [Caenorhabditis briggsae]
Length = 722
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 128/228 (56%), Gaps = 12/228 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFA+G AQEL ++LD+YWE +P+Y+++ L + Y+
Sbjct: 227 VHDIVTRGGRCLIPAFAIGPAQELMLILDEYWEAHQELHDIPVYYASSLAKKCMSVYQTF 286
Query: 59 ISWTSQKVKETY---NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + ++++ N F FK+V + GPCV+ ATPGML GFS E+F++W
Sbjct: 287 VNGMNSRIQKQIAIKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFENWC 346
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ +++ + L G K+ +R Q+ ++FS HTD +
Sbjct: 347 SDSKNGCIIAGYCVEGTLAKHILTEPEEIVSLSGEKLPMRMQVGYVSFSAHTDFNQTSNF 406
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESM 216
VK L P H++LVHGE +M+ LK I+ + I+ ++P N E +
Sbjct: 407 VKTLKPPHLVLVHGELHEMSRLKAGIERLFQDINIPIEVHNPRNTERL 454
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 45/292 (15%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCIPSTHYVKA 226
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL-------- 463
Query: 227 GASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILV 278
NF+ K S++ KC++G +RV+ GILV
Sbjct: 464 -------------NFRGEKLAKVMGSLADKKCSQG--------QRVS-GILV 493
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 133/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPDEITTMSGQKLALKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 463
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 132/232 (56%), Gaps = 16/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
V + V GG+ LIP FALGRAQEL ++LD+YW E + +PIY+++ L + Y+
Sbjct: 224 VQEIVTRGGRCLIPVFALGRAQELLLILDEYWGLHPELHD--IPIYYASSLAKKCMAVYQ 281
Query: 57 MLISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
++ +++++ N F FK++ N D GPCV+ ATPGM+ G S E+F+
Sbjct: 282 TYVNAMNERIRRQIAISNPFVFKHISNLKSIDHFDDVGPCVIMATPGMMQSGLSRELFEA 341
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
W N + + GYC+ GT+ +++S + G K+ ++ + ++FS HTD +
Sbjct: 342 WCGDTKNGVIIAGYCVEGTLAKQILSEPQEVTSMNGQKMPLKMSVDYISFSAHTDYQQTS 401
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSE-----LGIKCYDPANNESMCI 218
+ ++ L P ++ILVHGE+ +M+ LK I+ E L + Y+PAN ++ +
Sbjct: 402 EFIRALKPPNIILVHGEQNEMSRLKAAIEREYEGEDLKMDVYNPANGHAVTL 453
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 121/209 (57%), Gaps = 7/209 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + + +PIY+++ L + Y+
Sbjct: 1297 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTY 1356
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 1357 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWC 1416
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 1417 TDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 1476
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE 202
++ L P HV+LVHGE+ +M LK +Q E
Sbjct: 1477 IRTLKPPHVVLVHGEQNEMGRLKAALQRE 1505
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 237 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHTELHDIPIYYASSLAKKCMAVYQTY 296
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+S + K++ N F FK++ N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 297 VSAMNDKIRNQIAISNPFIFKHISNLKGIDHFDDIGPCVVMASPGMMQSGLSRELFEKWC 356
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++MS + + G K+ + + ++FS HTD + +
Sbjct: 357 TDSKNGVVIAGYCVEGTLAKEVMSEPEEVLSMSGQKLARKLSVDYISFSAHTDYEQTSEF 416
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
++ L P H+ILVHGE+ +M LK + E+ I + P N E +
Sbjct: 417 IRMLMPPHIILVHGEQNEMMRLKTALVREYQENPEISITVHTPRNCEEV 465
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 133/232 (57%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNDKIRKAINVNNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +M+ I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMTEPDEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 463
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 45/292 (15%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCIPSTHYVKA 226
++ L P HVILVHGE+ +MA LK + ++ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTL-------- 463
Query: 227 GASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILV 278
NF+ K S++ +KC +G +RV+ GILV
Sbjct: 464 -------------NFRGEKLAKVMGSLADNKCVQG--------QRVS-GILV 493
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIPAFALGRAQEL ++LD+YWE +P+Y+++ L + Y+
Sbjct: 239 VHEIVGRGGRCLIPAFALGRAQELLLILDEYWEAHPELQDIPVYYASSLAKKCMAVYQTF 298
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+S + ++++ N F F++V N + GPCV+ A+PGML G S E+F++W
Sbjct: 299 VSGMNSRIQKQIALNNPFVFRHVSNLKSIEHFEDVGPCVVLASPGMLQNGLSRELFENWC 358
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ ++S + + G K+ +R Q+ ++FS HTD +
Sbjct: 359 TDSKNGCIIAGYCVEGTLAKHILSEPEEIVTMSGQKLAMRLQVAYISFSAHTDYLQTSNF 418
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
V+ + H++LVHGE +M LK I ++ I+ ++P N ES+
Sbjct: 419 VRSMRSPHLVLVHGEINEMNRLKAAIIRQYEDDADFHIEVHNPRNTESV 467
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 15/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
+ V GG+ LIP FALGRAQEL ++LD+YW + L+ +PIY+++ L + Y+
Sbjct: 214 ISDIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELQDIPIYYASSLAKKCMSVYQTY 273
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+K T N F FK++ N +S+ D GP V+ A+PGM+ G S E+F++W
Sbjct: 274 INAMNDKIKRQINTNNPFVFKHISNL-KSMEHFDDIGPSVVMASPGMMQSGLSRELFENW 332
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + GYC+ GT+ ++S + + G K+ ++C + ++FS HTD K +
Sbjct: 333 CTDKRNGCIIAGYCVEGTLAKHILSEPEEIVTMGGQKLPLKCSVDYISFSAHTDYKQTSE 392
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNE 214
V+ L P H++LVHGE +M LK + E I ++P N E
Sbjct: 393 FVRILKPTHIVLVHGEANEMGRLKAALIREYEDDPEYNIDIFNPRNTE 440
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNDKIRKAININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
N + + GYC+ GT+ +M+ I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDRRNGVIIAGYCVEGTLAKHIMTEPDEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 463
>gi|47213099|emb|CAF89519.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 130/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 282 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTY 341
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 342 INAMNDKIRKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 401
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 402 TDKRNGVIIAGYCVEGTLAKHIMSEPDEITTMSGQKLALKMSVDYISFSAHTDYQQTSEF 461
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 462 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 512
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +PIY+++ L + Y+
Sbjct: 232 VQKTVLQGGRCLIPVFALGRAQELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLRPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +PIY+++ L + Y+
Sbjct: 232 VQKTVLQGGRCLIPVFALGRAQELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLRPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|393245131|gb|EJD52642.1| Metallo-hydrolase/oxidoreductase [Auricularia delicata TFB-10046
SS5]
Length = 751
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H+ + GG L+P FALGRAQEL ++LDDYW + VPIY+++ L + Y+
Sbjct: 224 IHEIIKRGGHALLPVFALGRAQELLLVLDDYWAKHPELHSVPIYYASNLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + +++ + N F FK++ + +R + D P PCV+ A+PGML G S E
Sbjct: 284 IHTMNSNIRQRFARRDNPFIFKHISHLPQTRGLERKIADGP-PCVVLASPGMLQSGTSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ +++ I+ L G I R +H ++FS H D
Sbjct: 343 LLELWAPDPRNALVVTGYSVEGTLARDILNDPDEIQGLRGNTIPRRLSVHYISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
+ ++ + QHV+LVHGE+ M L+ +QS IK + P N E++
Sbjct: 403 AQNSEFIELIKAQHVVLVHGEQNNMGRLRAALQSRYKDRDEDIKIHTPRNLETL 456
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 12/225 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + + +PIY+++ L + Y+
Sbjct: 233 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 353 TDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ L P HV+LVHGE+ +M LK +Q E Y+ N +M I
Sbjct: 413 IRTLKPPHVVLVHGEQNEMGRLKAALQRE-----YEDDPNTTMEI 452
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 14/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 233 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWANHPELHDIPIYYASSLAKKCMSVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+K N F FK++ N R + D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNDKIKRQITISNPFVFKHISNL-RGMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
N + + GYC+ GT+ ++S + + G K+ ++ + ++FS H D + I D
Sbjct: 352 CTDRRNGVIIAGYCVEGTLAKHILSQPEEVTTMSGQKLPLKMSVDYISFSAHADYQQISD 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI-----QSELGIKCYDPANNESM 216
++ L P HVILVHGE+ +M LK + S++ ++ ++P N +++
Sbjct: 412 FIRKLIPPHVILVHGEQNEMGRLKAAVVRDYEDSDIDLQVHNPKNTQAV 460
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +PIY+++ L + Y+
Sbjct: 232 VQKTVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRMLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 121/209 (57%), Gaps = 7/209 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + + +PIY+++ L + Y+
Sbjct: 233 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 353 TDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE 202
++ L P HV+LVHGE+ +M LK +Q E
Sbjct: 413 IRTLKPPHVVLVHGEQNEMGRLKAALQRE 441
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKTVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLRPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 130/231 (56%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 223 VHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 282
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 283 VNAMNDKIRKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 342
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 343 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEF 402
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + ++ I+ ++P N E++ +
Sbjct: 403 IRALKPPHVILVHGEQNEMARLKAALIREYEDNEQVHIEVHNPRNTEAVTL 453
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIIAGYCVEGTLAKTVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV 460
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNL-RVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD++W + +L +PIY+++ L + Y+
Sbjct: 232 VQKTVMQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I L G K+ + + ++FS HTD + +
Sbjct: 352 TDPKNGVIVAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE+ +M+ LK +Q E IK Y+P N ++
Sbjct: 412 IRMLRPNHVVLVHGEQNEMSRLKLALQREYEADATTDIKFYNPRNTHAV 460
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 12/225 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + + +PIY+++ L + Y+
Sbjct: 232 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWGQHSELHEIPIYYASSLAKKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 352 TDAKNGVIIAGYCVEGTLAKGILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ L P HV+LVHGE+ +M LK +Q E Y+ N +M I
Sbjct: 412 IRILKPPHVVLVHGEQNEMGRLKAALQRE-----YEDDPNTTMEI 451
>gi|440795785|gb|ELR16901.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 589
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 119/203 (58%), Gaps = 7/203 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++LD+YWE +VPIY+++ L + Y+
Sbjct: 106 VHTIVRRGGRCLLPVFALGRAQELLLILDEYWEAHPELHKVPIYYASSLAKKCMTVYQTY 165
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ ++ +++ + N F FK++ N D GPCV+ A+PGML G S E+F+ W
Sbjct: 166 INMMNENIRKQFAVSNPFVFKHISNLKGMQHFDDSGPCVVMASPGMLQSGLSRELFEKWC 225
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + +PGYC+ GT+ +MS + ++G + ++ +H ++FS H+D
Sbjct: 226 SNAKNGVIIPGYCVEGTLAKHIMSEPSEVTAMDGRMLPLKASVHYISFSAHSDFLQTAGF 285
Query: 174 VKFLSPQHVILVHGEKPKMATLK 196
+ + P +V+LVHG+ +M+ LK
Sbjct: 286 LDIIQPPYVVLVHGDANEMSRLK 308
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD+YW + PIY+++ L + Y+
Sbjct: 233 VQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPELQEFPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNDKIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFETWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ + + ++FS HTD + +
Sbjct: 353 TDPKNGVIIAGYCVEGTLAKTILSEPEEITSMSGQKLPLNMSVDYISFSAHTDYQQTSEF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HVILVHGE+ +M LK +Q E I Y+P N ++
Sbjct: 413 IRILKPAHVILVHGEQNEMNRLKSALQREYESDPNANITLYNPKNTHAV 461
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 12/225 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + +PIY+++ L + Y+
Sbjct: 233 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 353 TDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ L P HV+LVHGE+ +M LK +Q E Y+ N +M I
Sbjct: 413 IRILKPPHVVLVHGEQNEMGRLKAALQRE-----YEDDPNTTMEI 452
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 11/233 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD+YW + +PIY+++ L + Y+
Sbjct: 233 VQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPELQEIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K++ N F F+++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 293 INAMNDKIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFETWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ + + ++FS HTD + +
Sbjct: 353 SDPKNGVIIAGYCVEGTLAKTVLSEPEEITSMSGQKLRLNMSVDYISFSAHTDYQQTSEF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP-STHYVK 225
++ L P HV+LVHGE+ +M LK +Q E DP N ++ P +TH V+
Sbjct: 413 IRLLKPTHVVLVHGEQNEMNRLKSALQREYE---NDPNANITLHNPRNTHAVE 462
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 132/232 (56%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V G+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 233 IHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRKAINVNNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + GY + GT+ +MS I + G K+ ++ + ++FS HTD + +
Sbjct: 352 CTDKRNGVIIAGYSVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSE 411
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 412 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 463
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 12/225 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ LIP FALGRAQEL ++LD+YW + +PIY+++ L + Y+
Sbjct: 233 VHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 293 VNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 353 TDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ L P HV+LVHGE+ +M LK +Q E Y+ N +M I
Sbjct: 413 IRSLKPPHVVLVHGEQNEMGRLKAALQRE-----YEDDPNTTMEI 452
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 121/239 (50%), Gaps = 19/239 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FA+GR QE+C++L+DYW RM PIY++ L YK ++
Sbjct: 224 VHQVVGEGGKVLIPVFAVGRLQEICLMLEDYWNRMGYTEPIYYTTNLGENCMKVYKQCVN 283
Query: 61 WTSQKVKETY-----NAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGG---FSLEVF 110
W + V+ AF F NF+ +S ID V+ AT GML G F+ V
Sbjct: 284 WMNPTVQTNLFDNGSTAFKFTYSRNFNPKKSKIDESRGLVMLATSGMLNPGTPAFNFFVN 343
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPT---IELEGTK------IDVRCQIHQLAF 161
+ W N++ PGYC T G +++ + T ++ + I ++C++ +++F
Sbjct: 344 EKWYDDPRNMVIFPGYCGPNTFGRAVLTRDLTTNRVQFTSRRPAMTVDIIIKCKVERISF 403
Query: 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
S H D I+ L + P V+ +HG+KP + L RI GI P NN + P+
Sbjct: 404 SAHADQFEIISLCDRVRPSKVVTIHGDKPSVDALATRITQTTGIPAEAPRNNAKVTTPT 462
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 130/226 (57%), Gaps = 15/226 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V+ GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 231 VHDIVSRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMSVYQTY 290
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ ++K++ N F FK++ N +S+ + GP V+ A+PGM+ G S E+F+ W
Sbjct: 291 INAMNEKIRRQINISNPFVFKHISNL-KSMEHFEDIGPSVVLASPGMMQSGLSRELFESW 349
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + GYC+ GT+ ++S + + + G K+ ++C + ++FS HTD K +
Sbjct: 350 CTDKRNGCIIAGYCVEGTLAKHILSEPDEIMTMTGQKLPLKCSVDYISFSAHTDYKQTSE 409
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPAN 212
++ L P HV+LVHGE+ +M+ LK + +E + ++P N
Sbjct: 410 FLRALKPAHVVLVHGEQNEMSRLKAALIREYEDDTEYQMNVHNPKN 455
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 180/356 (50%), Gaps = 45/356 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM--NLRVPIYFSAGLTIQANMYYKML 58
+H + GGK L+P ALGRAQEL ++L+DYWE+ VP+Y ++ L +A ++
Sbjct: 278 IHGILGRGGKCLLPVVALGRAQELLLILEDYWEKHPEMSHVPVYQASALARKAMTVFETY 337
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + +K + N F+FK+V + +R+ L GPCV+ ATP ML G S E+F++W
Sbjct: 338 INVLNADIKRQFEEKNPFNFKHVQSLNRASDLDGNTGPCVVLATPSMLQSGTSRELFENW 397
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMD 172
S N + + + + GT+ +++S T++ +G ++ +RC + ++FS H D
Sbjct: 398 CESSDNGVVICDFAVQGTLAREILSDVKTVKARDGRELQLRCSVDAISFSAHADYPQTQQ 457
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAF 232
+ L+P HV+LVHGE +MA LK ++++ A+ + M + +
Sbjct: 458 FLDILNPPHVVLVHGETSEMARLKRALEAKA------VADGKEMNVFAP----------- 500
Query: 233 IRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQD- 291
++C + +Y G + V+GS ++ LP+ ++ R G+LV + V +D
Sbjct: 501 -KNCQSVEIRY--RGEKVAKVAGSLASD-CLPVEGQEVR---GVLVAKDFGHLLVAPEDV 553
Query: 292 ----ELLLMLGEKRHEVQFAYCCPVNVDELEKFTTTSL---TPTARMLRDPNKSSL 340
L + +R + C VN+D L +F +L R LR P KSS
Sbjct: 554 RDHARLRTSVVTQRQLIP----CEVNIDTL-RFALEALFEGMHAVRTLRMPKKSSF 604
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 20/231 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
+H V GG LIP FALGRAQEL ++LD+YW L +PIY+++ L + Y+
Sbjct: 277 IHDIVTRGGHCLIPVFALGRAQELLLILDEYWSCHPELHDIPIYYASSLAKKCMAVYQTY 336
Query: 59 ISWTSQKVKETY---NAFDFK------NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I +++++ N F FK N+ NFD GPCV+ A+PGM+ G S ++
Sbjct: 337 IGAMNERIRRQIGISNPFVFKHISSLKNIDNFDD-----IGPCVILASPGMMQSGLSRQL 391
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
F+ W + N + + GYC+ GT+ ++S + + + G K+ +R + ++FS HTD +
Sbjct: 392 FESWCTDKRNGVVVAGYCVEGTLAKHILSEPSEVVTMNGQKLPLRMSVDYISFSAHTDYE 451
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI---KCYDPANNESM 216
+ ++ L+P H++LVHGE+ +M LK+ + E Y P N +++
Sbjct: 452 QTSEFIRILNPPHIVLVHGEQNEMMRLKQGLLREFEDFQGSIYTPRNTQAV 502
>gi|328773999|gb|EGF84036.1| hypothetical protein BATDEDRAFT_9083 [Batrachochytrium
dendrobatidis JAM81]
Length = 669
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 12/228 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++LD+YW +L VPIY+++ + + Y+
Sbjct: 273 VHTIVKRGGRCLLPVFALGRAQELLLILDEYWHAHADLHSVPIYYASAIAKKCMAVYQTY 332
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+ + +++E N F FK++ N + D GPCV+ A+PGML G S E+ + W
Sbjct: 333 TNMMNGRIREMAKISNPFQFKHISNLKSIAQFDDVGPCVMMASPGMLQSGLSRELLELWC 392
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + +PGY + GT+G +++S I + G+K+ +R + ++FS H D + +
Sbjct: 393 VDKRNGVIIPGYVVEGTLGKQILSQPDEIPAMNGSKLPLRLSVEYISFSAHVDYRENSEF 452
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESM 216
++ + Q++ILVHG+ +M L+ +QS E+ + Y P N E++
Sbjct: 453 IEMVGSQNLILVHGDSNEMGRLRSALQSRYAEREVPLHIYTPRNCETV 500
>gi|164658265|ref|XP_001730258.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
gi|159104153|gb|EDP43044.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
Length = 741
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P F LGRAQEL +LLD+YWE VPIY+++ L + Y+
Sbjct: 147 IHSIIRRGGRVLLPVFVLGRAQELLLLLDEYWEAHPELHSVPIYYASSLARKCMSIYQTY 206
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
I +Q ++ + N F FK+V N RSL D GPCV+ A+PG + G S E+ +
Sbjct: 207 IHTMNQHIRARFHRRDNPFVFKHVSNL-RSLDKFDDKGPCVMMASPGFMQSGISRELLER 265
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WAP + N + + GY + GT+ ++S + + L G +I R + ++FS H D
Sbjct: 266 WAPDKRNGVIVSGYSVEGTMARDILSDPDDIVALNGQRIPRRMSVDYISFSAHVDYTQNS 325
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESMCI 218
+ + +HV+LVHGE M+ L+ +QS E I Y P N E + +
Sbjct: 326 RFIDQVKAKHVVLVHGELKNMSGLRAALQSRYSDREEEIHIYMPRNCEPLTL 377
>gi|410032124|ref|XP_003307804.2| PREDICTED: integrator complex subunit 11-like [Pan troglodytes]
Length = 313
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 93 VLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI-D 151
V+FATPGML G SL++F+ WA +E N++ +PGYC+ GT+G+K++SG +E+EG ++ +
Sbjct: 132 VVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLE 191
Query: 152 VRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
V+ Q+ ++FS H D KGIM LV P+ V+LVHGE KM LK++I+ EL + CY PA
Sbjct: 192 VKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPA 251
Query: 212 NNESMCIPSTHYVKAGASDAFIRSCM 237
N E++ +P++ + G S ++ M
Sbjct: 252 NGETVTLPTSPSIPVGISLGLLKREM 277
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 130/232 (56%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH+ V GG+ L+P FALGRAQEL ++L+++W+ +PIY+++ L + Y+
Sbjct: 238 VHEVVRRGGRCLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTF 297
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VK+ + N F FK +H+ D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 298 VSAMNDRVKQQHANHHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERW 357
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
N I + GYC+ GTI +++ + + +G + +R I ++FS H+DG+
Sbjct: 358 CGDRRNGIIMAGYCVDGTIAKDVLAKPKEVTKPDGKVLPLRMSTIEAVSFSAHSDGRQTR 417
Query: 172 DLVKFLSP-QHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
D ++ L+ +H ILVHG M LK ++ + + Y N ES+ IP
Sbjct: 418 DFIQNLTKVKHTILVHGNPGAMGQLKNKLLQDFRDRNMSVYTTMNQESIRIP 469
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 130/233 (55%), Gaps = 20/233 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALGRAQEL ++LD+YW ++LR VPIY+++ L + ++
Sbjct: 233 IHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTY 292
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + +++ + N F F+ V + R+L D GP V+ A+PGML G S + + W
Sbjct: 293 VNMMNDNIRKIFAERNPFIFRFVKSL-RNLEKFDDIGPSVILASPGMLQNGVSRTLLERW 351
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNP--TIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
AP N + L GY + GT+ K ++ P + L G KI R + +L+F+ H D
Sbjct: 352 APDPRNTLLLTGYSVEGTMA-KQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNS 410
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESMCIP 219
+ + ++ H+ILVHGE+ M LK + S ++ +K Y P N C+P
Sbjct: 411 EFIDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRN----CVP 459
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 129/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
V + V GG+VL+P FALGRAQEL ++L++YWE +L+ +PIY+++ L + Y+
Sbjct: 238 VAEIVRRGGRVLLPVFALGRAQELLLILEEYWEAHPDLQDIPIYYASSLAKRCMSVYQTY 297
Query: 59 ISWTSQKVKETY---NAFDFK------NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ + +++ Y N F FK N+ +FD S GPCV A+PGML G S E+
Sbjct: 298 INMMNDNIRKRYEVSNPFAFKYVLNVKNIQDFDDS-----GPCVFMASPGMLQSGLSREL 352
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGK 168
+ W N I LPGY + GT+ ++S TI L+G ++ +RC + + FS H+D
Sbjct: 353 CERWCTDRRNGIILPGYSVEGTLAKHILSEPSTITRLDGKEVPLRCSVDYITFSAHSDFL 412
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERI-------QSELGIKCYDPANNESM 216
+ + H++LVHGE +M L+ + QS I+ Y P N +++
Sbjct: 413 QTSEFIDRSRSGHIVLVHGEMTEMGRLRNALDLKYNKGQSVPNIRIYTPKNCQTV 467
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 10/227 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
V + V GG+ LIP FALGRAQEL ++LD++WE +L+ +PIY+++ L + ++
Sbjct: 253 VTEIVKRGGRCLIPVFALGRAQELLLILDEFWETHQDLQHIPIYYASSLAKKCMTIFQTY 312
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLEVFKHW 113
I+ + K+++ + N F FK++ N RS+ D GPCV+ A+PGML G S E+F+ W
Sbjct: 313 INMMNDKIRKQFDIHNPFVFKHISNL-RSIEDFQDNGPCVIMASPGMLQSGLSKELFELW 371
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMD 172
N + + GY + GT+ K+MS T+ L G + +R + ++FS H+D +
Sbjct: 372 CQDAKNGVIIAGYSVDGTLAKKIMSEPETVTLSNGNTVPLRMSVRTISFSAHSDKAQTEE 431
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCI 218
+ + P H+ILVHG+ LK +QS+ K Y P N S+ I
Sbjct: 432 FIGTIKPPHIILVHGDLANCNRLKHSLQSKFTDSKVYAPKNCTSINI 478
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++L+++W+ +PIY+++ L + Y+
Sbjct: 238 VHDVVRRGGRCLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTF 297
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VK+ + N F FK +H+ D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 298 VSAMNDRVKQQHANHHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERW 357
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
N I + GYC+ GTI +++ + + +G + +R I ++FS H+DG+
Sbjct: 358 CGDRRNGIIMAGYCVDGTIAKDVLAKPKEVAKPDGKVLPLRMSTIEAVSFSAHSDGRQTR 417
Query: 172 DLVKFLSP-QHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
D ++ L+ +H ILVHG M LK ++ + + Y N ES+ IP
Sbjct: 418 DFIQSLTKVKHTILVHGNPGAMGQLKSKLLQDFRDRNMSVYTTMNQESIRIP 469
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 128/232 (55%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++L+++W+ +PIY+++ L + Y+
Sbjct: 238 VHDVVRRGGRCLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTF 297
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VK+ + N F FK +H+ D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 298 VSAMNDRVKQQHANHHNPFVFKYIHSLIDTKSFEDNGPCVVLASPGMLQSGISLELFERW 357
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
N I + GYC+ GTI +++ + + +G + +R I ++FS H+DG+
Sbjct: 358 CGDRRNGIIMAGYCVDGTIAKDVLAKPKEVAKPDGKVLPLRMSTIEAVSFSAHSDGRQTR 417
Query: 172 DLVKFLSP-QHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
D + L+ +H ILVHG M LK ++ + + Y N ES+ IP
Sbjct: 418 DFIHHLTKVKHTILVHGNPGAMGQLKNKLLQDFRDRNMSVYTTMNQESIRIP 469
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++L+++W+ +PIY+++ L + Y+
Sbjct: 238 VHDVVRRGGRCLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTF 297
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+S + +VK+ + N F FK +H+ D + GPCV+ A+PGML G SLE+F+ W
Sbjct: 298 VSAMNDRVKQQHANHHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERW 357
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIM 171
N I + GYC+ GTI +++ + + +G + +R I ++FS H+DG+
Sbjct: 358 CGDRRNGIIMAGYCVDGTIAKDVLAKPKEVAKPDGKVLPLRMSTIEAVSFSAHSDGRQTR 417
Query: 172 DLVKFLSP-QHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
D ++ L+ +H ILVHG M LK ++ + + Y N ES+ IP
Sbjct: 418 DFIQSLTKVKHTILVHGNPGAMGQLKSKLLQDFRDRNMSVYTTMNQESIRIP 469
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
+H ++ GG+ LIP FALGRAQEL ++LD+YW + L+ VP+Y+++ L + Y+
Sbjct: 224 IHNIISRGGRCLIPVFALGRAQELLLILDEYWNQHPELQDVPVYYASSLAKKCMAVYQTY 283
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
IS ++K++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 284 ISAMNEKIRRQISISNPFVFKHISNLKGIDSFDDIGPSVVLASPGMMQSGLSRELFETWC 343
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ +LMS + + G ++ I ++FS H D + I +
Sbjct: 344 TDPRNGVIIAGYCVEGTLAKELMSEPEEVTAMNGQRMKRNISIDYISFSAHADFEQISEF 403
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
V L P H++L HGE+ +M+ LK I + I+ Y+P N +S+
Sbjct: 404 VDILRPPHIVLNHGEQNEMSRLKAAIIRDFEDRGISNIQVYNPKNCQSV 452
>gi|313244184|emb|CBY15021.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 14/230 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+ LIP FALGRAQEL ++LDDYW + +PIY+++ L + Y+
Sbjct: 224 IHDIINRGGRCLIPVFALGRAQELLLILDDYWAQHPELHDIPIYYASTLAKKCMSVYQTY 283
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+ + K+++ T N F F+++ N + D GP V+ A+PGM+ G S E+F+ W
Sbjct: 284 TNAMNSKIQKAITTRNPFQFRHISNLKGMEAFDDDIGPSVVLASPGMMQSGLSRELFEKW 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
++ N + L GY + GT+ +++ + + + + G K+ ++ Q+ ++FS H D + I +
Sbjct: 344 CTNKRNGVILAGYAVEGTLAHQIKTEPDEIVTMSGQKLPLKMQVEYMSFSAHADYRQISE 403
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
V+ + P H++LVHGE +M LK ++ +E I + P N E +
Sbjct: 404 FVREIKPPHIVLVHGEANEMGRLKRQLDIEYEHDAETDITIHMPRNAEKV 453
>gi|313216448|emb|CBY37756.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 14/230 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+ LIP FALGRAQEL ++LDDYW + +PIY+++ L + Y+
Sbjct: 224 IHDIINRGGRCLIPVFALGRAQELLLILDDYWAQHPELHDIPIYYASTLAKKCMSVYQTY 283
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+ + K+++ T N F F+++ N + D GP V+ A+PGM+ G S E+F+ W
Sbjct: 284 TNAMNSKIQKAITTRNPFQFRHISNLKGMEAFDDDIGPSVVLASPGMMQSGLSRELFEKW 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
++ N + L GY + GT+ +++ + + + + G K+ ++ Q+ ++FS H D + I +
Sbjct: 344 CTNKRNGVILAGYAVEGTLAHQIKTEPDEIVTMSGQKLPLKMQVEYMSFSAHADYRQISE 403
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
V+ + P H++LVHGE +M LK ++ +E I + P N E +
Sbjct: 404 FVREIKPPHIVLVHGEANEMGRLKRQLDIEYEHDAETDITIHMPRNAEKV 453
>gi|384499309|gb|EIE89800.1| hypothetical protein RO3G_14511 [Rhizopus delemar RA 99-880]
Length = 654
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 12/224 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++LD++WE +PIY+++ L + Y+
Sbjct: 217 VHNIVTRGGRCLMPVFALGRAQELLLILDEFWEAHPELDSIPIYYASSLAKRCMAVYQTY 276
Query: 59 ISWTSQKVKETY---NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + ++++ + N F FK++ N + + GPCV+ A+PGML G S E+F+ WA
Sbjct: 277 INMMNARIRKQFAISNPFVFKHISNLKNVEQFEDSGPCVMMASPGMLQNGLSRELFERWA 336
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
P + N + + GYC+ T+ + M+ + ++G K+ ++ + ++FS H D
Sbjct: 337 PDKKNGLVITGYCVENTLARQAMNEPSDFQAMDGRKVPLKMSVDYISFSAHVDFTQNSKF 396
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPAN 212
+ + HVILVHGE M LK +QS E + Y P N
Sbjct: 397 IDEVKAPHVILVHGEANAMYRLKSALQSKYSEKEENVTIYTPKN 440
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 12/228 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V V GG+ LIP FALGRAQEL ++LDDYW +PIY+++ L + Y+
Sbjct: 231 VQDIVNRGGRCLIPVFALGRAQELLLILDDYWANHPELHDIPIYYASSLAKKCMAVYQTY 290
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+ +QK+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 291 SNAMNQKIQKQLNISNPFQFKHISNLKGMEHFDDVGPSVVMASPGMMQSGLSRELFESWC 350
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S + + G KI ++ + ++FS H D K +
Sbjct: 351 NDRRNGVIVAGYCVEGTLAKHILSEPEEVVSMSGQKIPLKLSVDYISFSAHADYKQCSEF 410
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESM 216
V+ + P HV+LVHGE +M LK + E I+ ++P N ES+
Sbjct: 411 VRAMKPPHVVLVHGEANEMNRLKLALNREYEDDPEPIQIHNPKNTESV 458
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 239 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTY 298
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ +++++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 299 VNAMNERIRRQITINNPFVFKHISNLKSIEHFEDVGPCVVMASPGMMQSGLSRELFESWC 358
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 359 TDPKNGVIIAGYCVEGTLAKTILSEPEEISTMVGQKLPLKMSVDYISFSAHTDYQQTSEF 418
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESM 216
++ L P H++LVHGE+ +M LK I E I+ ++P N +++
Sbjct: 419 IRTLKPPHIVLVHGEQNEMGRLKAAIVREYEDDVETRIEVHNPRNTQAV 467
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 282 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTY 341
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ +++++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 342 VNAMNERIRRQITINNPFVFKHISNLKSIEHFEDIGPCVVMASPGMMQSGLSRELFESWC 401
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 402 TDPKNGVIIAGYCVEGTLAKTILSEPEEISTMVGQKLPLKMSVDYISFSAHTDYQQTSEF 461
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P H++LVHGE+ +M LK I E I+ ++P N +++
Sbjct: 462 IRTLKPPHIVLVHGEQNEMGRLKAAIVREYEDDLETRIEVHNPRNTQAV 510
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LDDYW++ +L VP+Y+++GL + Y+
Sbjct: 234 VHSIIRRGGHVLLPTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQTY 293
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ N +++ + D P PCV+ A+PG + G S E
Sbjct: 294 IHTMNANIRSRFARRDNPFVFKHISNVPQTRGWEKKIADGP-PCVVLASPGFMQVGPSRE 352
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+F+HW P N + + GY + GT +M+ L+G I R + +++FS H D
Sbjct: 353 LFEHWCPDARNGLIITGYSIEGTPARDIMTEPEEFTTLKGATIPRRISVDEISFSAHVDY 412
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
+ ++ + QHV+LVHGE M L+ +QS +K + P N E++
Sbjct: 413 AQNSEFIEQVRAQHVVLVHGEATGMGRLRAAMQSRFKEKDEDVKIHTPRNLETL 466
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LDDYW++ +L VP+Y+++GL + Y+
Sbjct: 234 VHSIIRRGGHVLLPTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQTY 293
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ N +++ + D P PCV+ A+PG + G S E
Sbjct: 294 IHTMNANIRSRFARRDNPFVFKHISNVPQTRGWEKKIADGP-PCVVLASPGFMQVGPSRE 352
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+F+HW P N + + GY + GT +M+ L+G I R + +++FS H D
Sbjct: 353 LFEHWCPDARNGLIITGYSIEGTPARDIMTEPEEFTTLKGATIPRRISVDEISFSAHVDY 412
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
+ ++ + QHV+LVHGE M L+ +QS +K + P N E++
Sbjct: 413 AQNSEFIEQVRAQHVVLVHGEATGMGRLRAAMQSRFKEKDEDVKIHTPRNLETL 466
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 163 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTY 222
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ +++++ N F FK++ N + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 223 VNAMNERIRRQITINNPFVFKHISNLKSIEHFEDIGPCVVMASPGMMQSGLSRELFESWC 282
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 283 TDPKNGVIIAGYCVEGTLAKTILSEPEEISTMVGQKLPLKMSVDYISFSAHTDYQQTSEF 342
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P H++LVHGE+ +M LK I E I+ ++P N +++
Sbjct: 343 IRTLKPPHIVLVHGEQNEMGRLKAAIVREYEDDLETRIEVHNPRNTQAV 391
>gi|429965431|gb|ELA47428.1| hypothetical protein VCUG_01079 [Vavraia culicis 'floridensis']
Length = 642
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 117/200 (58%), Gaps = 6/200 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V +C+ GKVLIP FA+GRAQE+ +L +++ NL VP ++ + + + YK
Sbjct: 381 VVQCIERNGKVLIPVFAIGRAQEMYTMLSAFFKNANLNVPFFYCSTILERGLKIYKRFDD 440
Query: 61 WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
+T K++++ FDF + F + + P ++F++PGML G SL++FK NL
Sbjct: 441 YT----KKSFH-FDFDGIRMFKNEYLVSDKPFIVFSSPGMLHTGNSLKIFKALCEDARNL 495
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQ 180
+ +PGYC+ T+ KL++G TI L+ + +R Q+ + FS H D GI+ + + P+
Sbjct: 496 VIIPGYCMKNTLAEKLLNGIRTITLD-REYTIRIQVRNIGFSAHADSSGILRFIAKVRPR 554
Query: 181 HVILVHGEKPKMATLKERIQ 200
+V+LVHG+K +M K I+
Sbjct: 555 NVVLVHGDKNRMVKFKRIIE 574
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
VH V+ GG+ LIP FALGRAQEL ++LD+YW +L +PIY+++ L + Y+
Sbjct: 248 VHDVVSRGGRCLIPVFALGRAQELLLILDEYWIANPSLHGIPIYYASALAKKCMGVYRTY 307
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +V+ + N F+FK + N D GPCV A+PGML G S ++F+ W
Sbjct: 308 INMMNDRVRAQFDVSNPFEFKYISNIKGIESFDDNGPCVFMASPGMLQSGLSRQLFERWC 367
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
S+ N + +PGY + GT+ +MS PT L+ + + + ++FS H+D +
Sbjct: 368 TSKRNGVVIPGYSVEGTLAKHIMS-EPTEITRLDNVSVPLNLSVSYVSFSAHSDFLQTSE 426
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCI 218
++ + P HV+LVHG+ +M+ L+ + I P N +S+ +
Sbjct: 427 FIQEIQPPHVVLVHGDANEMSRLRNALIGRFKSINVLTPKNAQSVSL 473
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 13/227 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD+YW + +L+ +PIY+++ L + Y+
Sbjct: 236 VQKIVTQGGRCLIPVFALGRAQELLLILDEYWSQNPDLQEIPIYYASSLAKKCMAVYQTY 295
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K++ N F F+ + N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 296 INAMNDKIRRQIAINNPFVFRFISNLKGIDHFDDVGPCVVMASPGMMQSGLSRELFETWC 355
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++ I + G K+ + + ++FS HTD + +
Sbjct: 356 TDPKNGVIIAGYCVEGTLAKTILFEPEEITSMNGQKLPLNMSVDYISFSAHTDYQQTSEF 415
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE------LGIKCYDPANNE 214
++ L P HV+LVHGE+ +M LK + E + I ++P N +
Sbjct: 416 IRLLQPTHVVLVHGEQNEMGRLKSALMREYEANPKIQITFHNPRNTQ 462
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK LIP F+LGRAQE ++L++YW+ V I+F + + + Y++ S+ +Q+
Sbjct: 240 GGKCLIPVFSLGRAQEFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQE 299
Query: 66 V-KETYNAFDFKNVHNFDRSLIDAP---GPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
+ K+T AFDFK + S+ D PCV+ A+PGML G S ++F+ W + N +
Sbjct: 300 LRKKTKQAFDFKFIREGSSSVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGV 359
Query: 122 TLPGYCLAGTIGNKLM--SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+PGYC+ GT+ L+ S P I EG ++ +C + +++F H+D + + P
Sbjct: 360 IIPGYCVEGTLAKDLILDSTKPFINSEGDQVVPKCSVTEISFCAHSDFAHTRKFIGNVKP 419
Query: 180 QHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCIP 219
+H++L+HGE M L ++ E + Y P N + + IP
Sbjct: 420 KHLVLIHGEGKSMEQLHNALKKEYPELNIYMPCNTQPIKIP 460
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 13/227 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD+YW + +L+ +PIY+++ L + Y+
Sbjct: 234 VQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPDLQEIPIYYASSLAKKCMAVYQTY 293
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K++ N F F+ + N D GPCV+ A+PGM+ G S E+F+ W
Sbjct: 294 INAMNDKIRRQIAINNPFVFRFISNLKGIDHFDDVGPCVVMASPGMMQSGLSRELFESWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ ++ I + G K+ + + ++FS HTD + +
Sbjct: 354 TDPKNGVIIAGYCVEGTLAKTILFEPEEITSMNGQKLPLNMSVDYISFSAHTDYQQTSEF 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSE------LGIKCYDPANNE 214
++ L P HV+LVHGE+ +M LK + E + I ++P N +
Sbjct: 414 IRLLQPTHVVLVHGEQNEMGRLKSALMREYEANPKVQITFHNPRNTQ 460
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 9/221 (4%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK LIP F+LGRAQE ++L++YW+ V I+F + + + Y++ S+ +Q
Sbjct: 240 GGKCLIPVFSLGRAQEFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQD 299
Query: 66 V-KETYNAFDFKNVHNFDRSLIDAP---GPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
+ K+T AFDFK + S+ D PCV+ A+PGML G S ++F+ W + N +
Sbjct: 300 LRKKTKQAFDFKFIREGSSSVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGV 359
Query: 122 TLPGYCLAGTIGNKLM--SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+PGYC+ GT+ L+ S P I EG ++ +C + +++F H+D + + P
Sbjct: 360 IIPGYCVEGTLAKDLILDSTKPFINSEGDQVIPKCSVTEISFCAHSDFAHTRKFIGNVKP 419
Query: 180 QHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCIP 219
+H++L+HGE M L ++ E + Y P N + + IP
Sbjct: 420 KHLVLIHGEGKSMEQLHNALKKEYPELNIYMPCNTQPIKIP 460
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 130/232 (56%), Gaps = 17/232 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 230 VHDIVTRGGRCLIPAFALGRAQELMLILDEYWDNHPELHDIPIYYASQLARKCMAVYQTY 289
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I +++++ + N F F+++ N D GPCV+ A+PGM+ G S E+F++W
Sbjct: 290 IYAMNERIRNQLASNNPFCFRHISNLKSIEHFDDSGPCVVMASPGMMQSGLSRELFENWC 349
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +++S + + G + ++C + ++FS HTD +
Sbjct: 350 TDKRNGVIIAGYCVEGTLAKQILSLPTEVPTMSGQMLPLKCSVDYISFSAHTDYQQTSAF 409
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESMCIP 219
++ L P +V+LVHGE+ +M L +Q E ++ + P N C+P
Sbjct: 410 IRELKPSYVVLVHGEQNEMLRLCGALQREYEDDETCRLEIFTPKN----CVP 457
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK LIP F+LGRAQE ++L++YW+ V I+F + + + Y++ S+ +Q+
Sbjct: 240 GGKCLIPVFSLGRAQEFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQE 299
Query: 66 V-KETYNAFDFKNVHNFDRSLIDAP---GPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
+ K+T AFDFK + S+ D PCV+ A+PGML G S ++F+ W + N +
Sbjct: 300 LRKKTKQAFDFKFIREGSSSVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGV 359
Query: 122 TLPGYCLAGTIGNKLM--SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+PGYC+ GT+ L+ S P I EG ++ +C + +++F H+D + + P
Sbjct: 360 IIPGYCVEGTLAKDLILDSTKPFINSEGDQVVPKCSVTEISFCAHSDFAHTRKFIGNVKP 419
Query: 180 QHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCIP 219
+H++L+HGE M L ++ E + Y P N + + IP
Sbjct: 420 KHLVLIHGEGKSMEQLHNALKKEYPELNIYMPCNTQPIKIP 460
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 14/231 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V+ V+ GG+ LIP FALGRAQEL ++LD++W + +PI+F++ L + Y+
Sbjct: 234 VYTIVSRGGRCLIPVFALGRAQELLLILDEFWTKHAELQNIPIFFASSLAKKCMAVYQTF 293
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
IS +Q +++ N F FK+V + RS+ + GPCV+ A+PGML G S E+F+ W
Sbjct: 294 ISGMNQNIQKQIAVQNPFLFKHVRSL-RSIDFFEDIGPCVVLASPGMLQSGLSRELFEMW 352
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
N + GYC+ GT+ ++S + L G K+ +R Q+ ++FS H D K +
Sbjct: 353 CTDTKNGCIIAGYCVEGTLAKHILSEPKEIVGLNGAKLALRMQVAYVSFSAHADYKQTSE 412
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
++ L P +++ VHGE +M LK I E ++ + P N E + +
Sbjct: 413 FIRRLKPPNLVFVHGEATEMIRLKAAIMREYEDDPTCMQSFSPRNTEPVSL 463
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 26/236 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-----NLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQE+ ++LD+YW + N +VPI++++ L + +
Sbjct: 232 IHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVF 291
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + K+++ + N F FKN+ N D GP V+ A+PGML G S
Sbjct: 292 QTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDE--FQDFGPSVMLASPGMLQNGLSR 349
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P E NL+ + GY + GT+ LM P+I I RCQ+ +++F+ H
Sbjct: 350 DLLEKWCPDEKNLVLITGYSVEGTMAKFLMLEPETIPSINNSDVSIPRRCQVEEISFAAH 409
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ V+ + ++ILVHGE M LK + S ++ Y+P N
Sbjct: 410 VDFRENLEFVEKIGAPNIILVHGESNPMGRLKSALLSNFSSLKGTEDEVRVYNPRN 465
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 26/236 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-----NLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQE+ ++LD+YW + N +VPI++++ L + +
Sbjct: 232 IHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVF 291
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + K+++ + N F FKN+ N D GP V+ A+PGML G S
Sbjct: 292 QTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDE--FQDFGPSVMLASPGMLQNGLSR 349
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P E NL+ + GY + GT+ LM P+I I RCQ+ +++F+ H
Sbjct: 350 DLLEKWCPDEKNLVLITGYSVEGTMAKFLMLEPETIPSINNSDVSIPRRCQVEEISFAAH 409
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ V+ + ++ILVHGE M LK + S ++ Y+P N
Sbjct: 410 VDFRENLEFVEKIGAPNIILVHGESNPMGRLKSALLSNFSSLKGTEDEVRVYNPRN 465
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 134/234 (57%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW++ +L+ VPIY+++ L ++ Y+
Sbjct: 215 VHSIIRRGGHVLLPTFALGRAQELLLILDEYWKKHPDLQNVPIYYASSLARKSMAVYQTY 274
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + V+ + N F FK++ N ++R + + P PCV+ A+PG +T G S E
Sbjct: 275 IHTMNSNVRSRFAKRDNPFVFKHISNLPQSKGWERKIAEGP-PCVVLASPGFMTSGASRE 333
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMS-GNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ ++ S + L+G I + + +++FS H D
Sbjct: 334 LLELWAPDSRNGVIITGYSIEGTMAREIQSEPEEIVSLKGVPIPRKISVDEISFSAHVDY 393
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLK----ERIQS-ELGIKCYDPANNESM 216
+ ++ + QH++LVHGE+ M L+ +R +S + +K + P N E++
Sbjct: 394 SQNSEFIEMIKAQHIVLVHGEQTAMGRLRAAMTDRYKSRDEDVKIHTPRNLETL 447
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 129/232 (55%), Gaps = 17/232 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 230 VHDIVTRGGRCLIPAFALGRAQELMLILDEYWDNHPELHDIPIYYASQLARKCMAVYQTY 289
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I +++++ N F F+++ N D GPCV+ A+PGM+ G S E+F++W
Sbjct: 290 IYAMNERIRNQLANNNPFCFRHISNLKSIEHFDDSGPCVVMASPGMMQSGLSRELFENWC 349
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC+ GT+ +++S + + G + ++C + ++FS HTD +
Sbjct: 350 TDKRNGVIIAGYCVEGTLAKQILSLPTEVPTMSGQMLPLKCSVDYISFSAHTDYQQTSAF 409
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESMCIP 219
++ L P +V+LVHGE+ +M L +Q E ++ + P N C+P
Sbjct: 410 IRELKPSYVVLVHGEQNEMLRLCGALQREYEDDETCRLEIFTPKN----CVP 457
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW--ERMNLRVPIYFSAGLTIQANMYYKML 58
VH+ V GK LIP FALGRAQEL ++LD+YW VPIY+++ L + Y+
Sbjct: 253 VHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTY 312
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +V+ + N F+FK++ N D GPCV A+PGML G S ++F+ W
Sbjct: 313 INMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWC 372
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N I +PGY + GT+ +MS I L+ + + + ++FS H+D +
Sbjct: 373 SDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEF 432
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCI 218
++ + P HV+LVHG+ +M+ L++ + ++ I P N S+ +
Sbjct: 433 IQEIQPPHVVLVHGDANEMSRLRQSLVAKFKTINVLTPKNAMSVAL 478
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 118/216 (54%), Gaps = 10/216 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + V GG+ L+P FALGRAQEL ++L++YW+ +PIY+S+ + + Y
Sbjct: 227 VAEVVKRGGRCLLPVFALGRAQELLLILEEYWDAHPELQEIPIYYSSSIAKRCMAIYSTY 286
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
I +Q +++ Y N F FK V N RSL + GPCV A+PGML G S +F+
Sbjct: 287 IHQMNQNIQQRYRRFGNPFAFKYVMNI-RSLDEFEDSGPCVFMASPGMLQSGMSRRLFEK 345
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
W N + LPGY + GT+ +++ T+ L+G + +RC + + FS H+D
Sbjct: 346 WCSDRRNGVILPGYSVQGTLAKYILTDPATVPRLDGQHVPLRCSVDYITFSAHSDFMQTS 405
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKC 207
+ ++ P +++LVHGEK +M L + + S K
Sbjct: 406 EFIEQCRPSNLVLVHGEKSEMQRLAQALDSRFNRKA 441
>gi|281206064|gb|EFA80253.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 656
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 119/205 (58%), Gaps = 11/205 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW--ERMNLRVPIYFSAGLTIQANMYYKML 58
+H+ V GG+ LIP FALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 131 IHEVVKRGGRCLIPVFALGRAQELLLILDEYWIAHPELQKIPIYYASALARKCMSVYQTY 190
Query: 59 ISWTSQKVKETY---NAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ N +R D GPCV A+PGML G S ++F+
Sbjct: 191 INMMNERIRAQFDLSNPFSFKHIENISGIERFTDD--GPCVFMASPGMLQSGLSRQLFER 248
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
W +MN + +PGY + GT+ +MS I +G + + + ++FS H+D
Sbjct: 249 WCSDKMNGVVIPGYNVEGTLAKHIMSEPDEITRTDGVNVPLHLTVTYVSFSAHSDFLQTS 308
Query: 172 DLVKFLSPQHVILVHGEKPKMATLK 196
+ ++ + P HV+LVHG+ +M+ LK
Sbjct: 309 EFIQEIHPPHVVLVHGDANEMSRLK 333
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 122/207 (58%), Gaps = 7/207 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
V V GG+ L+P FALGRAQEL ++L+++W E +L+ +PIY+++ L + Y+
Sbjct: 221 VSHVVLRGGRCLLPVFALGRAQELLLILEEHWDENPHLKGIPIYYASALAQKCMSVYQTY 280
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ ++++++ N FDF+NV + D GPCV+ A+PGML GFS E+F+ W
Sbjct: 281 INMMNERIQKASLVKNPFDFRNVESIKDIQSFKDTGPCVMMASPGMLQSGFSRELFEKWC 340
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+E N + +PGYC+ GT+ +++S +E ++G + + + ++FS H D +
Sbjct: 341 SNEKNGVVIPGYCVEGTLAKEILSEPKEVESMKGGLLKLNMSVEYISFSAHVDYTQNIQF 400
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
+ P+++ VHGE +M LK +Q
Sbjct: 401 IDECQPKNLFFVHGEANEMMRLKNSVQ 427
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 128/219 (58%), Gaps = 15/219 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
V + GG+ LIP FALGR QEL ++LD++W+ +L +PIYF++ L +A Y+
Sbjct: 232 VESVIRRGGRCLIPVFALGRTQELLLILDEHWQAHPDLHDIPIYFASKLAAKALRVYQTY 291
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + ++++ N F F ++ N +S+ D GPCV+ A+PGML G S ++F+ W
Sbjct: 292 INMMNDRIRKQIAVSNPFLFDHISNL-KSMDDFDDSGPCVVMASPGMLQSGVSRQLFERW 350
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
+ N +PGY + GT+ K++S PT + ++G + + C + ++FS H D G
Sbjct: 351 CSDKRNACLIPGYVVEGTLAKKILS-EPTEIVAMDGRVLPMNCTVEYISFSAHADFVGTS 409
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
V+ L P +++LVHGEK +M R++S L K +DP
Sbjct: 410 GFVEKLVPPNIVLVHGEKNEMM----RLKSALNKKFHDP 444
>gi|269860830|ref|XP_002650133.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
gi|220066453|gb|EED43934.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
Length = 657
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 17/241 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V V GGK L+P FALGRAQEL ++LD+YWE ++PI++++ L + Y+
Sbjct: 224 VSDVVERGGKCLLPVFALGRAQELLLILDEYWEENPHLKKIPIFYASALAKKCMGIYQTY 283
Query: 59 ISWTS---QKVKETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + QK+ T N FDFKNV N D + GPCV+ A+PGML G S ++F+ W
Sbjct: 284 VNMMNERMQKLNLTRNPFDFKNVENIKDAKTVRDGGPCVIMASPGMLQSGVSRDIFERWC 343
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + GYC+ GT+ +++ IE G + + + ++FS H D +
Sbjct: 344 SDSKNGVVIAGYCVEGTLAKEVLKEPKEIESHRGQLLKLNMTVEYISFSAHVDYTQNAEF 403
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFI 233
+ P ++ VHGE +M LK+ IQ++ + NN M I Y +A I
Sbjct: 404 IYTCMPNYLFFVHGEATEMGRLKQSIQNK------NEKNNIQMAI----YTLKNGEEALI 453
Query: 234 R 234
+
Sbjct: 454 K 454
>gi|323453344|gb|EGB09216.1| hypothetical protein AURANDRAFT_71470 [Aureococcus anophagefferens]
Length = 1101
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNL-RVPIYFSAGLTIQANMYYKML 58
+ + V GG+ LIP FALGRAQEL ++LD+YW ER +L RVP+++++ + +A Y+
Sbjct: 124 IERIVQRGGRCLIPVFALGRAQELLLILDEYWKEREDLQRVPVFYASKMASRALRVYQTY 183
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + V++ N F F +V N +D GP V+ A PGML G S ++F WA
Sbjct: 184 INMMNMHVRDQMDISNPFKFDHVQNLASIDDLDDSGPVVVLAAPGMLQSGVSRQLFDRWA 243
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKIDVRCQIHQLAFSPHTDGKGIMDL 173
SE N + + GY + GT+ +++S ++ + G RC + ++FS H D
Sbjct: 244 SSERNGVVIAGYSVEGTLAKQILSEPDEVKTQDGRTQPRRCTVVSISFSAHVDYFQNFQF 303
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG 204
V+ P +++LVHGEK +M+ LK ++ E G
Sbjct: 304 VESTMPNNIVLVHGEKNEMSRLKGKLVQETG 334
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 21/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ L+P FALGRAQEL ++L+++W+ +PIY+++ L + Y+
Sbjct: 238 VHDVVRRGGRCLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTF 297
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFDRSLIDAP-----GPCVLFATPGMLTGGFSLEV 109
+S + +VK+ + N F FK + RSL+D GPCV+ A+PGML G SLE+
Sbjct: 298 VSAMNDRVKQQHANHHNPFVFKYI----RSLMDTKSFEDNGPCVVLASPGMLQSGISLEL 353
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQ-IHQLAFSPHTDG 167
F+ W N I + GYC+ GTI +++ + +G + +R I ++FS H+DG
Sbjct: 354 FERWCGDRRNGIIMAGYCVDGTIAKDVLAKPKEMTKPDGKVLPLRMSTIEAVSFSAHSDG 413
Query: 168 KGIMDLVKFLSP-QHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
+ D ++ L+ +H ILVHG M LK ++ + + Y N ES+ IP
Sbjct: 414 RQTRDFIQNLTKVKHTILVHGNPGAMGQLKNKLLQDFRDRNMSVYTTMNQESIRIP 469
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H+ V GG+ LIP FALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 232 IHEIVNRGGRCLIPVFALGRAQELLLILDEYWSLHPELHEIPIYYASSLAQKCMAVYQTY 291
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K++ N F FK++ + + GPCV+ A+PGM+ G S E+F+ W
Sbjct: 292 INAMNDKIRRQIAINNPFIFKHISSLKGIDQFEDVGPCVIMASPGMMQSGLSRELFEAWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + GYC+ GT+ ++S I + G K+ ++ + ++FS HTD + +
Sbjct: 352 TDPKNGCIIAGYCVEGTLAKHVLSEPEDITSMAGQKLPMKLSVDYISFSAHTDYQQTSEF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL------GIKCYDPANNESM 216
++ L P HV+LVHGE +M LK + E I+ Y+P N ++
Sbjct: 412 IRLLKPPHVVLVHGEANEMNRLKAALIREYEHDPDTQIRIYNPRNTAAV 460
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW++ VPIY+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + V+ + N F FK++ N ++R + D P PCV+ A+PG +T G S E
Sbjct: 284 IHTMNANVRSRFAKRDNPFVFKHISNLPHTRGWERKVADGP-PCVVLASPGFVTVGASRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMS-GNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N I + GY + GT+ + S + + L+G I + + +++FS H D
Sbjct: 343 LLEMWAPDSRNGIIITGYSIEGTMARDIQSEPDEIMSLKGVPIPRKLSVDEISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLK----ERIQS-ELGIKCYDPANNESM 216
+ ++ + QH++LVHGE+ M L+ +R +S + +K + P N E++
Sbjct: 403 SQNSEFIEMVKAQHIVLVHGEQTAMGRLRAAMTDRYKSRDEDVKIHTPRNLETL 456
>gi|312080023|ref|XP_003142424.1| cpsf3-prov protein [Loa loa]
Length = 715
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 42/256 (16%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWE------------------RMNLRVP---- 40
K V GG+ LIPAFALGRAQEL ++LD+YWE M + P
Sbjct: 224 KVVGRGGRCLIPAFALGRAQELLLILDEYWEAHPELQDIPNNPVCCNADEMTVVEPNRSV 283
Query: 41 -------IYF--SAGLTIQANMYYKMLISWTSQKVKETY---NAFDFKNVHNFDR-SLID 87
I+F ++ L + Y+ +S + ++++ N F FK+V N +
Sbjct: 284 IVGIDLLIFFDHASSLAKKCMAVYQTFVSGMNSRIQKQIALNNPFVFKHVSNLKSIDHFE 343
Query: 88 APGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELE 146
GPCV+ A+PGML G S E+F++W N + GYC+ GT+ ++S + +
Sbjct: 344 DVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYCVEGTLAKHILSEPEEIVAMN 403
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI------Q 200
G K+ +R Q+ ++FS HTD D ++ L P H++LVHGE +M LK I +
Sbjct: 404 GQKLAMRLQVAYISFSAHTDYTQTSDFIRALRPPHLVLVHGEMNEMNRLKAAIIRQYEDE 463
Query: 201 SELGIKCYDPANNESM 216
S+ I+ Y+P N ES+
Sbjct: 464 SDFHIEVYNPRNTESV 479
>gi|444315239|ref|XP_004178277.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
gi|387511316|emb|CCH58758.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
Length = 781
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 137/254 (53%), Gaps = 26/254 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
VH V+ GG+VL+P FALGRAQE+ ++LD+YW E +VPIY+++ L + +
Sbjct: 238 VHSIVSRGGRVLMPVFALGRAQEIMLILDEYWNNHHEELGGGQVPIYYASSLAKKCMSVF 297
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L + GP VL A+PGML G S +
Sbjct: 298 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLDNFEDFGPSVLLASPGMLQSGISRD 356
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + N++ + GY + GT+ LM P+I I RC+I +++F+ H
Sbjct: 357 LLERWCPEDKNMVLITGYSVEGTMAKYLMVEPDTIPSINNPEISIPRRCKIEEISFAAHV 416
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--------ELGIKCYDPANNESMC 217
D + ++ ++ ++ ++ILVHGE M LK I S E + Y+P N +
Sbjct: 417 DFQENLEFIEKINASNIILVHGESNPMGRLKSAILSNFTSLKGTENEVHVYNPRNGVEVT 476
Query: 218 IP--STHYVKAGAS 229
+ TH KA S
Sbjct: 477 LEFKGTHIAKAIGS 490
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 127/219 (57%), Gaps = 15/219 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
V V GG+ LIP FALGR QEL ++LD++W +L+ +PIYF++ L +A Y+
Sbjct: 231 VEAVVRRGGRCLIPVFALGRTQELLLILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTY 290
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + ++++ N F F+++ N +S+ D GP V+ A+PGML G S ++F+ W
Sbjct: 291 INMMNDRIRKQIAISNPFQFEHISNL-KSMDDFDDSGPSVVMASPGMLQSGVSRQLFERW 349
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
+ N +PGY + GT+ K++S PT L+G I + C + ++FS H D G
Sbjct: 350 CSDKRNACLIPGYVVEGTLAKKILS-EPTEIAALDGRIIPMNCTVEYISFSAHADFVGTS 408
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
V+ L+P +++LVHGEK +M R++S L K DP
Sbjct: 409 GFVEKLTPPNIVLVHGEKNEMM----RLKSALNKKFNDP 443
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 127/219 (57%), Gaps = 15/219 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
V V GG+ LIP FALGR QEL ++LD++W +L+ +PIYF++ L +A Y+
Sbjct: 231 VEAVVRRGGRCLIPVFALGRTQELLLILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTY 290
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + ++++ N F F+++ N +S+ D GP V+ A+PGML G S ++F+ W
Sbjct: 291 INMMNDRIRKQIAISNPFQFEHISNL-KSMDDFDDSGPSVVMASPGMLQSGVSRQLFERW 349
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
+ N +PGY + GT+ K++S PT L+G I + C + ++FS H D G
Sbjct: 350 CSDKRNACLIPGYVVEGTLAKKILS-EPTEIAALDGRIIPMNCTVEYISFSAHADFVGTS 408
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
V+ L+P +++LVHGEK +M R++S L K DP
Sbjct: 409 GFVEKLTPPNIVLVHGEKNEMM----RLKSALNKKFNDP 443
>gi|85001073|ref|XP_955255.1| cleavage and polyadenylation specificty factor, subunit [Theileria
annulata strain Ankara]
gi|65303401|emb|CAI75779.1| cleavage and polyadenylation specificty factor, subunit, putative
[Theileria annulata]
Length = 1282
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 120/215 (55%), Gaps = 13/215 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKML 58
V + GK L+P FALGR+QE+ ++LD+YWE R VPI++ + L ++ Y+
Sbjct: 235 VMDIIMREGKCLLPVFALGRSQEILLILDNYWENNRQLHNVPIFYISPLASKSLRVYETF 294
Query: 59 I----SWTSQKVKETYNAFDFKNVHNFDRSL------IDAPGPCVLFATPGMLTGGFSLE 108
+ + Q V +N FDFK V + RS+ + GPC++ +PGML GG SLE
Sbjct: 295 VGQCGDYIKQSVYNGFNPFDFKFV-KYARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLE 353
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
VF+ P N + L GY + GT+ ++L I L + RC + Q++FS H D
Sbjct: 354 VFELICPDNRNGVVLTGYTVKGTLADELKKDPEFINLGNKVVKPRCSVEQISFSAHADYN 413
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL 203
D +K LS +VILVHGE+ +M +K++++ ++
Sbjct: 414 QTKDFIKKLSVPNVILVHGERNEMKRMKDKLEEDI 448
>gi|238882385|gb|EEQ46023.1| hypothetical protein CAWG_04366 [Candida albicans WO-1]
Length = 783
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 27/284 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALG AQEL ++LD+YW + V +++++ L + Y+
Sbjct: 237 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 296
Query: 59 ISWTSQKVK------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ K++ E N FDFK + + D S GP V+ ATPGML G S ++ +
Sbjct: 297 TGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLE 356
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPHTDG 167
WAP NL+ L GY + GT+ +L+ PT+ T D+ R I +++F+ H D
Sbjct: 357 KWAPDGKNLVILTGYSVEGTMAKELLK-EPTMIQSATNPDMTIPRRIGIEEISFAAHVDF 415
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCIP 219
+ + ++ +SP VILVHG+ M LK + S+ +K Y+P N E + I
Sbjct: 416 QQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIG 475
Query: 220 STHYVKAGASDAFIRSCMNPNFQYLKSG-SEEKSVSGSKCTEGT 262
K + S Q LK +E S SK TE T
Sbjct: 476 ----FKGLKIAKVLGSLAEEQLQVLKKVIQDEVSAENSKITELT 515
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 130/235 (55%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQE+ ++LD+YW E +VPIY+++ L + +
Sbjct: 228 IHSTVSRGGRVLLPVFALGRAQEIMLILDEYWTQHSDELGGGQVPIYYASNLAKKCMSVF 287
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R++ D GP V+ A+PGML G S +
Sbjct: 288 QTYVNMMNDDIRKKFRDSQTNPFVFKNI-SYLRNIDDFQDFGPSVMLASPGMLQSGLSRD 346
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
V + W P + NL+ + GY + GT+ LM P+I I RCQI +++F+ H
Sbjct: 347 VLEKWCPEDKNLVLITGYSVEGTMAKFLMLEPDTIPSINNPEATIPRRCQIEEISFAAHV 406
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI--------QSELGIKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + SE + ++P N
Sbjct: 407 DFRENLEFIEKISAPNIILVHGESNPMGRLKSALLSNFASLRGSEQEVHVFNPRN 461
>gi|68489322|ref|XP_711502.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
gi|68489371|ref|XP_711478.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|74584420|sp|Q59P50.1|YSH1_CANAL RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46432783|gb|EAK92250.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|46432809|gb|EAK92275.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
Length = 870
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 27/284 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALG AQEL ++LD+YW + V +++++ L + Y+
Sbjct: 324 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 383
Query: 59 ISWTSQKVK------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ K++ E N FDFK + + D S GP V+ ATPGML G S ++ +
Sbjct: 384 TGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLE 443
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPHTDG 167
WAP NL+ L GY + GT+ +L+ PT+ T D+ R I +++F+ H D
Sbjct: 444 KWAPDGKNLVILTGYSVEGTMAKELLK-EPTMIQSATNPDMTIPRRIGIEEISFAAHVDF 502
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCIP 219
+ + ++ +SP VILVHG+ M LK + S+ +K Y+P N E + I
Sbjct: 503 QQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIG 562
Query: 220 STHYVKAGASDAFIRSCMNPNFQYLKS-GSEEKSVSGSKCTEGT 262
K + S Q LK +E S SK TE T
Sbjct: 563 ----FKGLKIAKVLGSLAEEQLQVLKKIIQDEVSAENSKITELT 602
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 11/206 (5%)
Query: 9 GKVLIPAFALGRAQELCILLDDYW--ERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GK L+P FALGRAQE+ ++L++YW + +PI++ + L ++ Y+ I + V
Sbjct: 266 GKCLLPVFALGRAQEILLILEEYWAANKQLQSIPIFYISPLASKSLRVYETFIGLCGEYV 325
Query: 67 KET----YNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
KE+ +N F+FK V R+ + GPCV+ +PGML GG SLEVF+ +AP
Sbjct: 326 KESVYNGHNPFNFKFVKYAKSVESIRTYLLRDGPCVVMTSPGMLQGGPSLEVFEIFAPDN 385
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N + L GY + GT+ + L + L I RC I Q++FS HTD D ++ L
Sbjct: 386 RNGVILTGYTVKGTLADALKKDPEVLNLGSRVIKRRCTIEQISFSAHTDYNQTKDFIRRL 445
Query: 178 SPQHVILVHGEKPKMATLKERIQSEL 203
+VILVHGE+ +M +++++ E+
Sbjct: 446 CVPNVILVHGERSEMKRMRDKLSEEM 471
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P F LGRAQEL +LLD+YW VPIY+++ L + Y+
Sbjct: 242 IHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTY 301
Query: 59 ISWTSQKVKETYNAFD----FKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
I + ++ +N D FK++ N RSL + GPCV+ A+PG + G S E+ +
Sbjct: 302 IHTMNDHIRTRFNRRDNPFVFKHISNL-RSLEKFEDRGPCVMMASPGFMQSGVSRELLER 360
Query: 113 WAPSEMNLITLPGYCLAGTIG-NKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WAP + N + + GY + GT+ N L + I + G KI R + ++FS H D
Sbjct: 361 WAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGINGQKIPRRMSVDYISFSAHVDFAQNS 420
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESMCI 218
+ + QH++LVHGE+ M+ L+ +Q+ +K + P N E + +
Sbjct: 421 RFIDEIKAQHIVLVHGEQNNMSKLRAALQARFTARGSDVKIHTPRNCEPLVL 472
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 27/244 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYK-- 56
+H + GG++L+P FALGRAQEL ++L++YW + + IYF++ L + Y+
Sbjct: 244 IHSTLLKGGRILMPVFALGRAQELLLILEEYWGLNDDLHNINIYFASSLARKCMAVYQTY 303
Query: 57 -------MLISWTSQKVKETYNAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+ +S +S E N F FK + N RSL GPCV+ A+PGML G S
Sbjct: 304 TNIMNDSIRLSTSSTNSGEKRNPFQFKYIKNI-RSLDKFQDFGPCVVVASPGMLQNGVSR 362
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSP 163
E+ + WAP N + + GY + GT+ +L++ PTI+ T DV R + +++F+
Sbjct: 363 ELLERWAPDPRNAVIMTGYSVEGTMAKELLTEPPTIQ-SATNADVTIPRRINVEEISFAA 421
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNES 215
H D + + ++ ++P +ILVHGE M LK + S+ +K ++P N +
Sbjct: 422 HVDFQQNSNFIEQINPSKIILVHGESNPMGRLKSALLSKYASRKGTDEEVKVFNPRNCDE 481
Query: 216 MCIP 219
+ IP
Sbjct: 482 IKIP 485
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 155/317 (48%), Gaps = 42/317 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H VA GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 232 IHTTVAKGGRVLLPVFALGRAQEIMLILDEYWSQHAEELGTGQVPIFYASNLARKCMSVF 291
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + K+++ + N F FKN+ N D GP V+ A+PGML G S
Sbjct: 292 QTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDE--FQDFGPSVMLASPGMLQNGLSR 349
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P E NL+ + GY + GT+ L+ P+I I RCQ+ +++F+ H
Sbjct: 350 DLLEKWCPDEKNLVLITGYSVEGTMAKFLILEPESIPSINNPDVTIPRRCQVEEISFAAH 409
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESM 216
D + ++ V+ + +ILVHGE M LK + S + Y+P N ++
Sbjct: 410 VDFRENLEFVEKIGAPSIILVHGESNPMGRLKSALLSNFSPLKGTENEVHVYNPRNCVAV 469
Query: 217 CIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEKSVSGSK---------------CTEG 261
I VK + I M P + +E+K+ +G K EG
Sbjct: 470 DI-EFKGVKIAKAVGNIVEEMVPTNEDEDEEAEDKNNTGEKDKISVSEAPQEDELVGKEG 528
Query: 262 TLPLWIKDERVAEGILV 278
+ +++ERV GILV
Sbjct: 529 NMQHDLEEERVISGILV 545
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 26/236 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-----NLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQE+ ++LD+YW+ N +VPI++++ L + +
Sbjct: 235 IHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVF 294
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + +++ + N F FKN+ N D + GP V+ A+PGML G S
Sbjct: 295 QTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDE--FEDFGPSVMLASPGMLQNGLSR 352
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P E NL+ + GY + GT+ L+ P++ I RCQ+ ++ F+ H
Sbjct: 353 DILEKWCPEEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAH 412
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ + ++ILVHGE M LK + S + ++P N
Sbjct: 413 VDFRENLEFIELIGASNIILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRN 468
>gi|302499334|ref|XP_003011663.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
gi|291175215|gb|EFE31023.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 135/260 (51%), Gaps = 44/260 (16%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 137 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 196
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 197 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 254
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLM--------------SGNPTIE 144
GML G S E+ + WAP+E N + + GY + GT+G +++ S P+ +
Sbjct: 255 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNSAGPSDD 314
Query: 145 LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 315 -QKIMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNV 373
Query: 202 --ELGIKCYDPANNESMCIP 219
E+ +K Y PAN + + IP
Sbjct: 374 DKEVKVKVYTPANCDEVRIP 393
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P F LGRAQEL +LLD+YW VPIY+++ L + Y+
Sbjct: 242 IHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTY 301
Query: 59 ISWTSQKVKETYNAFD----FKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
I + ++ +N D FK++ N RSL + GPCV+ A+PG + G S E+ +
Sbjct: 302 IHTMNDHIRTRFNRRDNPFVFKHISNL-RSLEKFEDRGPCVMMASPGFMQSGVSRELLER 360
Query: 113 WAPSEMNLITLPGYCLAGTIG-NKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WAP + N + + GY + GT+ N L + I + G KI R + ++FS H D
Sbjct: 361 WAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGMNGQKIPRRMSVDYISFSAHVDFAQNS 420
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESMCI 218
+ + QH++LVHGE+ M+ L+ +Q+ +K + P N E + +
Sbjct: 421 RFIDEIKAQHIVLVHGEQNNMSKLRAALQARFTARGSDVKIHTPRNCEPLVL 472
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 122/236 (51%), Gaps = 26/236 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQEL ++LD+YW E +VPIY+++ L + +
Sbjct: 229 IHSTVTKGGRVLLPVFALGRAQELMLILDEYWSQHAEELGGGQVPIYYASNLARKCMSVF 288
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + ++ + N F FKN+ N D GP V+ A+PGML G S
Sbjct: 289 QTYVNMMNDDIRRKFRDSQTNPFVFKNISYLKNIDE--FQDFGPSVMLASPGMLQNGLSR 346
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
EV + W P NL+ + GY + GT+ LM P+I I RCQI +++F+ H
Sbjct: 347 EVLERWCPEGKNLVLITGYSVEGTMAKFLMLEPDTIPSINNPEITIPRRCQIEEISFAAH 406
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S +++LVHGE M LK + S + Y+P N
Sbjct: 407 VDFQENLEFIEKISAPNIVLVHGESNPMGRLKSALLSNFASLKGTDQEVHVYNPRN 462
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 43/254 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + ++PIY+++ L + Y+ +S +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 66 VKETY----------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+K + A+DFK V + +SL D G CV+ A+PGM+ G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSL-KSLERFDDLGGCVMLASPGMMQSGTSR 368
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGTKI 150
E+ + WAP N + + GY + GT+ +++ I E E T I
Sbjct: 369 ELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQRENEQTMI 428
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI-----QSELGI 205
RC + + +F+ H DGK M+ V+ ++ VILVHGEK M LK ++ Q +
Sbjct: 429 PRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSFNAQKAIPT 488
Query: 206 KCYDPANNESMCIP 219
K Y PAN E + IP
Sbjct: 489 KIYSPANCEELRIP 502
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P F LGRAQEL +LLD+YW VPIY+++ L + Y+
Sbjct: 242 IHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTY 301
Query: 59 ISWTSQKVKETYNAFD----FKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
I + ++ +N D FK++ N RSL + GPCV+ A+PG + G S E+ +
Sbjct: 302 IHTMNDHIRTRFNRRDNPFVFKHISNL-RSLEKFEDRGPCVMMASPGFMQSGVSRELLER 360
Query: 113 WAPSEMNLITLPGYCLAGTIG-NKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WAP + N + + GY + GT+ N L + I + G KI R + ++FS H D
Sbjct: 361 WAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGMNGIKIPRRMSVDYISFSAHVDFAQNS 420
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESMCI 218
+ + QH++LVHGE+ M+ L+ +Q+ +K + P N E + +
Sbjct: 421 RFIDEIKAQHIVLVHGEQNNMSKLRAALQARFTARGSDVKIHTPRNCEPLTL 472
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 43/254 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + ++PIY+++ L + Y+ +S +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 66 VKETY----------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+K + A+DFK V + +SL D G CV+ A+PGM+ G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSL-KSLERFDDLGGCVMLASPGMMQSGTSR 368
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGTKI 150
E+ + WAP N + + GY + GT+ +++ I E E T I
Sbjct: 369 ELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQRENEQTMI 428
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI-----QSELGI 205
RC + + +F+ H DGK M+ V+ ++ VILVHGEK M LK ++ Q +
Sbjct: 429 PRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSFNAQKAIPT 488
Query: 206 KCYDPANNESMCIP 219
K Y PAN E + IP
Sbjct: 489 KIYSPANCEELRIP 502
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 130/236 (55%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+PAFALGRAQEL ++LD+YW++ VPIY+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ N ++R + + P PCV+ A+PG + G S +
Sbjct: 284 IHTMNSNIRTRFAKRDNPFVFKHISNMPQSSGWERKIAEGP-PCVVLASPGFMQSGPSRQ 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMS-GNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ ++M+ + I ++G I + + ++FS H D
Sbjct: 343 LLELWAPDSRNGLIVTGYSVEGTLAREIMTEPDEIISMKGATIQRKLSVDYISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESMCI 218
+ ++ + H++LVHGE+ M L+ +Q+ E +K + P N E++ +
Sbjct: 403 SQNSEFIEMIKAPHIVLVHGEQTAMGRLRAALQARYKNREEDVKIHTPRNLETLNL 458
>gi|71027889|ref|XP_763588.1| cleavage and polyadenylation specificity factor protein [Theileria
parva strain Muguga]
gi|68350541|gb|EAN31305.1| cleavage and polyadenylation specificity factor protein, putative
[Theileria parva]
Length = 708
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 13/215 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKML 58
V + GK L+P FALGR+QE+ ++LDDYWE + VPI++ + L ++ Y+
Sbjct: 236 VMDIIMRNGKCLLPVFALGRSQEILLILDDYWENNKQLHNVPIFYISPLASKSLKVYETF 295
Query: 59 I----SWTSQKVKETYNAFDFKNVHNFDRSL------IDAPGPCVLFATPGMLTGGFSLE 108
+ + Q V +N F+FK V + RS+ + GPC++ +PGML GG SLE
Sbjct: 296 VGQCGEYIKQSVYNGFNPFNFKFVR-YARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLE 354
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
VF+ P N + L GY + GT+ ++L I L I RC + Q++FS H D
Sbjct: 355 VFELLCPDNRNGVVLTGYAVKGTLADELKKDPELINLGTKVIKPRCSVEQISFSAHADYN 414
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL 203
+K LS +VILVHGE+ +M +K++++ ++
Sbjct: 415 QTKGFIKKLSVPNVILVHGERNEMKRMKDKLEEDI 449
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 26/236 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQEL ++LD+YW E + +VPIY+++ L + Y
Sbjct: 228 IHSTVGRGGRVLMPVFALGRAQELMLILDEYWSQHADELGSGQVPIYYASNLAKKCMSVY 287
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + +++ + N F FK++ N D GP V+ A+PGML G S
Sbjct: 288 QTYVNMMNDDIRKKFRDSQTNPFIFKHISYLKNLDE--FQDFGPSVMLASPGMLQNGLSR 345
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P + N++ + GY + GT+ +M P+I I RCQI +++F+ H
Sbjct: 346 DLLEKWCPEDKNMVLITGYSVEGTMAKYIMLEPENIPSINNPDVSIPRRCQIEEISFAAH 405
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S +VILVHGE M LK + S + ++P N
Sbjct: 406 VDFQENIEFIEKISANNVILVHGESNPMGRLKSALLSNFSSLKGTENEVHVFNPRN 461
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 30/245 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
V V GG VL+PAFALGRAQE+ ++L+++W R +L VPIY+ + L + Y+
Sbjct: 223 VTAVVKRGGHVLLPAFALGRAQEILLILEEHWSRNPDLHGVPIYYVSSLAKKCMAVYQTN 282
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF------DRSLIDAPGPCVLFATPGMLTGGFSLE 108
IS + K++E + N F FK + N ++ + + P PCV+ A+PG + G S E
Sbjct: 283 ISSMNSKIQERWKKQENPFVFKYITNLPQTRGAEKKVAEGP-PCVVLASPGFMDNGSSRE 341
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM-SGNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ + S + + L+GT I R + ++FS H DG
Sbjct: 342 LLELWAPDPRNAVIVTGYSVEGTMARDIQNSPDEIVSLKGTTIPRRLAVEVISFSAHVDG 401
Query: 168 KGIMDLVKFLSPQHV-----------ILVHGEKPKMATLKERIQ-----SELGIKCYDPA 211
+ +D ++ + QH+ +L+HGE M +LK R++ +E GI+ + P
Sbjct: 402 EQNLDFIEKVKAQHIVSLLIASSDVKVLMHGESKAMFSLKNRLEQRYAGNEEGIQIHAPW 461
Query: 212 NNESM 216
N E++
Sbjct: 462 NTETL 466
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 15/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P F LGRAQEL +LLD+YW VPIY+++ L + Y+
Sbjct: 242 IHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELQSVPIYYASALAKKCISVYQTY 301
Query: 59 ISWTSQKVKETYNAFD----FKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
I + ++ +N D FK++ N RSL + GPCV+ A+PG + G S E+ +
Sbjct: 302 IHTMNDHIRTRFNRRDNPFVFKHISNL-RSLEKFEDRGPCVMMASPGFMQSGVSRELLER 360
Query: 113 WAPSEMNLITLPGYCLAGTIG-NKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WAP + N + + GY + GT+ N L + I + G KI R + ++FS H D
Sbjct: 361 WAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGMNGQKIPRRMSVDYISFSAHVDFAQNS 420
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESMCI 218
+ + QH++LVHGE+ M+ L+ +Q++ K + P N E + +
Sbjct: 421 RFIDEIKAQHIVLVHGEQNNMSKLRAALQAKFTARGSDTKIHTPRNCEPLVL 472
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 34/240 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQEL ++LD+YW++ + +VPI++++ L + +
Sbjct: 229 IHTTVGRGGRVLMPVFALGRAQELMLILDEYWQKHSDELGSGQVPIFYASDLARKCMSVF 288
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ ++L + GP V+ A+PGML G S +
Sbjct: 289 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLKNLEEFQDFGPSVMLASPGMLQSGLSRD 347
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM--------SGNPTIELEGTKIDVRCQIHQLA 160
+ + W P + NL+ + GY + GT+ +M GNP I I RCQ+ +++
Sbjct: 348 LLEKWCPEQKNLVLITGYSVEGTMAKYIMLEPDTIPAIGNPEI-----NIPRRCQVEEIS 402
Query: 161 FSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
F+ H D + ++ ++ ++ Q++ILVHGE M LK + S + Y+P N
Sbjct: 403 FAAHVDFQENLEFIEKINAQNIILVHGESNPMGRLKSALLSNFSSTKGTDNEVHVYNPRN 462
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 128/254 (50%), Gaps = 43/254 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + ++PIY+++ L + Y+ +S +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 66 VKETY----------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+K + A+DFK V + +SL D G CV+ A+PGM+ G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSL-KSLERFDDLGGCVMLASPGMMQSGTSR 368
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGTKI 150
E+ + WAP N + + GY + GT+ +++ I E E T I
Sbjct: 369 ELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRTNNNSRRPGQREGEQTMI 428
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI-----QSELGI 205
RC + + +F+ H DGK M+ V+ ++ VILVHGEK M L+ ++ Q +
Sbjct: 429 PRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLRSKLLSFNAQKSVPT 488
Query: 206 KCYDPANNESMCIP 219
K Y PAN E + IP
Sbjct: 489 KIYSPANCEELRIP 502
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 127/254 (50%), Gaps = 43/254 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + ++PIY+++ L + Y+ +S +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 66 VKETY----------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+K + A+DFK V + +SL D G CV+ A+PGM+ G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSL-KSLERFDDLGGCVMLASPGMMQSGTSR 368
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGTKI 150
E+ + WAP N + + GY + GT+ +++ I E E T I
Sbjct: 369 ELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQRENEQTMI 428
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI-----QSELGI 205
RC + + +F+ H DGK M+ V+ + VILVHGEK M LK ++ Q +
Sbjct: 429 PRRCTVQEYSFAAHVDGKENMEFVQEVGAPVVILVHGEKGNMTRLKSKLLSFNAQKTIPT 488
Query: 206 KCYDPANNESMCIP 219
K Y PAN E + IP
Sbjct: 489 KIYSPANCEELRIP 502
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 23/260 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW E L+ +PIY+ + L I+ Y+
Sbjct: 256 VRSILKRGGRVLLPVFALGRAQELLLILDEYWAEHPELQHIPIYYVSSLAIKCMDVYRQY 315
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFDRSL------IDAPGPCVLFATPGMLTGGFSLE 108
I S V+ + N FDFK +F R L ++ PCV+ A+PG LT G S E
Sbjct: 316 IHTMSPNVRSKFARGINPFDFKRKDSFIRPLDRGISKLNDRNPCVVMASPGFLTSGVSRE 375
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE----GTKIDVRCQIHQLAFSPH 164
+ + WAP N + + GY + G + +M N E+ G KI R + ++FS H
Sbjct: 376 LLEKWAPDPRNGLIITGYSVEGVMARTIM--NEPTEIAALNGGAKIARRLSVDYISFSAH 433
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCIP 219
D + + P H+ILVHGE M+ L+ +++ ++ Y P N E++ +
Sbjct: 434 VDYTQNSKFIDEVMPSHLILVHGEVNNMSRLRAALKTRFAERKNDVQIYTPRNVETVKLK 493
Query: 220 STHYVKAGASDAFIRSCMNP 239
A A + ++ + P
Sbjct: 494 FRGERMAKALGSLAQTALTP 513
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 42/259 (16%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 243 VTSVINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 302
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 303 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 360
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-------------EL 145
GML G S E+ + WAP+E N + + GY + GT+G ++++ I +
Sbjct: 361 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDD 420
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 421 QKIMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVD 480
Query: 202 -ELGIKCYDPANNESMCIP 219
E+ +K Y PAN + + IP
Sbjct: 481 KEVKVKVYTPANCDEVRIP 499
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 42/259 (16%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 243 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 302
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 303 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 360
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-------------EL 145
GML G S E+ + WAP+E N + + GY + GT+G ++++ I +
Sbjct: 361 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDD 420
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 421 QKIMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVD 480
Query: 202 -ELGIKCYDPANNESMCIP 219
E+ +K Y PAN + + IP
Sbjct: 481 KEVKVKVYTPANCDEVRIP 499
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW++ VPIY+++ L + Y+
Sbjct: 224 VHNIIRRGGHVLLPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + V+ + N F FK++ N ++R + + P PCV+ A+PG +T G S E
Sbjct: 284 IHTMNANVRTRFAKRDNPFVFKHISNVPQARGWERKIAEGP-PCVVLASPGFVTSGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N I + GY + GT+ +++ I ++G I + + ++FS H D
Sbjct: 343 LLELWAPDSRNGIIVTGYSVEGTMARDILNEPEEITSVKGQTIPRKLSVDYISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESM 216
+ ++ ++ QH++LVHGE+ M L+ +Q + +K + P N E++
Sbjct: 403 SQNSEFIELVNAQHIVLVHGEQTAMGRLRAAMQDRYKNRDQDVKIHTPRNLETL 456
>gi|388579831|gb|EIM20151.1| Metallo-hydrolase/oxidoreductase [Wallemia sebi CBS 633.66]
Length = 626
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG+VL+P+FALGRAQEL ++LD+YW+R +L +PIY+++ L + Y+
Sbjct: 249 VHNIIRRGGRVLMPSFALGRAQELLLILDEYWQRNPDLHSIPIYYASNLARKCMAVYQAY 308
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I ++ + + N F FK + D GPCV+ A+PGML G S E+ + W
Sbjct: 309 IRTMNKNINRRFDSGENPFQFKFISELGDLRKWQDKGPCVMLASPGMLQSGTSRELLERW 368
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
AP N + + GY + GT+ + +++ I + G KI + + ++FS H D
Sbjct: 369 APDPKNGLIICGYSVEGTMAHSIVNEPDEITGINGNKIPRKLSVDYISFSAHVDFTQNTQ 428
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSE-----LGIKCYDPANNESM 216
+ + PQHV+LVHG M+ L ++S L IK + P N E +
Sbjct: 429 FIDEIKPQHVVLVHGALTNMSRLAAALRSRYADRGLDIKVHMPKNAEPL 477
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 131/258 (50%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++L++YWER ++PIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILEEYWERHPEFQKIPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGNKNVAAGPWDFRYVRSL-RSLERFDDIGSCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSG-------------------NPTI-ELE 146
E+ + WAPSE N + + GY + GT+ +L++ NP E +
Sbjct: 370 RELLERWAPSERNGVVMTGYSVEGTMAKQLLNEPEQIPATMSKSAAGPGSRVNPMADEDQ 429
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC I +++F+ H DG D ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 KVMIPRRCTIDEISFAAHVDGVENRDFIEQVAAPVVILVHGEKHQMMRLKSKLLSLNVDK 489
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN + + IP
Sbjct: 490 TVKVKVYTPANCDEIRIP 507
>gi|302667649|ref|XP_003025406.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
gi|291189514|gb|EFE44795.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
Length = 865
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 42/259 (16%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 241 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 300
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 301 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 358
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-------------EL 145
GML G S E+ + WAP+E N + + GY + GT+G ++++ I +
Sbjct: 359 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDD 418
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 419 QKIMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVD 478
Query: 202 -ELGIKCYDPANNESMCIP 219
E+ +K Y PAN + + IP
Sbjct: 479 KEVKVKVYTPANCDEVRIP 497
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 8/224 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H+ V GG+ LIP FALGRAQEL ++LD+YW L +PIY+++ L + Y+
Sbjct: 246 IHEIVRRGGRCLIPVFALGRAQELLLILDEYWIAHPELHGIPIYYASALAKKCMKVYQTY 305
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I +++++ + N F FK++ + + + GPCV A+PGML G S ++F+ W
Sbjct: 306 IQMMNERIRAQFAVSNPFIFKHIKDINGIDNFNDNGPCVFMASPGMLQSGLSRQLFERWC 365
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGY + GT+ +MS I L+G + + + ++FS H+D +
Sbjct: 366 SDRRNGVVIPGYSVEGTLAKHIMSEPSEITRLDGINVPLNLSVTYVSFSAHSDFLQTSEF 425
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESM 216
++ + P H++LVHG+ +M+ LK + S+ + P N+ S+
Sbjct: 426 IQDIHPPHIVLVHGDANEMSRLKHSLVSKFKTVNVMTPKNSMSV 469
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 42/259 (16%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 243 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 302
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 303 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 360
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-------------EL 145
GML G S E+ + WAP+E N + + GY + GT+G ++++ I +
Sbjct: 361 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDD 420
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 421 QKIMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVD 480
Query: 202 -ELGIKCYDPANNESMCIP 219
E+ +K Y PAN + + IP
Sbjct: 481 KEVKVKVYTPANCDEVRIP 499
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 12/226 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW + ++PIY+++ L + Y+
Sbjct: 242 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTY 301
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + + ID GP V+ A+PG L G S ++F
Sbjct: 302 INSMNERIRNQFAQSNPFHFKHIESLNS--IDNFHDVGPSVVMASPGGLQSGLSRQLFDK 359
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +++ + L G + +H ++FS H D
Sbjct: 360 WCTDKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTS 419
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESM 216
+ + L P ++ILVHGE +M+ LK++++++ G P N +S+
Sbjct: 420 NFLDELRPPNIILVHGEANEMSRLKQKLKTQFDGTNIVSPKNCQSV 465
>gi|255718827|ref|XP_002555694.1| KLTH0G15202p [Lachancea thermotolerans]
gi|238937078|emb|CAR25257.1| KLTH0G15202p [Lachancea thermotolerans CBS 6340]
Length = 755
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 152/304 (50%), Gaps = 29/304 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E N +VP+++++ L + +
Sbjct: 233 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGNGQVPVFYASNLAKKCMSVF 292
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + +++ + N F FKN+ N D GP V+ A+PGML G S
Sbjct: 293 QTYVNMMNDDIRKKFRDSQSNPFIFKNISYLKNLDE--FQDFGPSVMLASPGMLQNGLSR 350
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P E NL+ + GY + GT+ +M P+I I RCQI +++F+ H
Sbjct: 351 DLLEKWCPGEKNLVLITGYSVEGTMAKFIMLEPDTIPSINNPEINIPRRCQIEEISFAAH 410
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESM 216
D + ++ ++ + +++ILVHGE M LK + S ++ ++P N S+
Sbjct: 411 VDFRENLEFIEKVGARNIILVHGESNPMGRLKSALLSNFSALKNTEDEVRVFNPRNCISV 470
Query: 217 CIPSTHYVKAGASDAFIRSCMNP--NFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAE 274
+ A A + + + L+S S+ K +G P ++DE +
Sbjct: 471 DLEFKGVKVAKAIGNIVDEVSSTLHGLKELESRSDVKPQKEHGEGDGE-PKDVEDETIVA 529
Query: 275 GILV 278
GILV
Sbjct: 530 GILV 533
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + V+ GGKVLIPAFALGRAQEL ++LD+YWE +PIY+++ L + Y+
Sbjct: 232 VAQTVSQGGKVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTY 291
Query: 59 ISWTSQKVK---ETYNAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ E N FDFK++ N D D GP V+ A+PG L G S ++F
Sbjct: 292 INAMNERIQKQFEVSNPFDFKHIQPLKNIDE--FDDIGPAVVMASPGGLQSGLSRQLFDI 349
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT +M+ + L G + + ++H ++FS H D
Sbjct: 350 WCQDKKNSCVIPGYVVEGTPAKAIMNEPKEVTLLSGLVVPLNMRVHYISFSAHADFTQTS 409
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
+ L P ++ILVHGE +M LK ++ ++ +K P N +++
Sbjct: 410 AFLHELRPPNIILVHGEANEMGRLKAKLTTQFAEQNVKILSPKNCQTV 457
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V V GG+ L+P FALGRAQEL ++L+++W ++PIY+++ L + Y+
Sbjct: 221 VQNVVQRGGRCLLPVFALGRAQELLLILEEHWNSNTSLQKIPIYYASALAKRCMGVYQTY 280
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I ++++++ N F FK V N D GPCV+ A+PGML G S ++F+ W
Sbjct: 281 IGMMNERIQKLSLVRNPFAFKYVKNLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWC 340
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGYC+ GT+ +++S IE L G K+ + + ++FS H D
Sbjct: 341 SDSKNAVIIPGYCVDGTLAKEILSEPKEIEALNGKKLRLNMSVEYISFSAHVDFTQNSQF 400
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
++ P+H+ VHGE +M L+ IQ
Sbjct: 401 IEECQPKHLFFVHGEMNEMQRLRNVIQ 427
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 42/259 (16%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 243 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 302
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 303 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 360
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-------------EL 145
GML G S E+ + WAP+E N + + GY + GT+G ++++ I +
Sbjct: 361 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDD 420
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 421 QKIMIQRRCTVDEVSFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVD 480
Query: 202 -ELGIKCYDPANNESMCIP 219
E+ +K Y PAN + + IP
Sbjct: 481 KEVKVKVYTPANCDEVRIP 499
>gi|328704356|ref|XP_001945120.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Acyrthosiphon pisum]
Length = 694
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 16/226 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
V+ V GG+ LIP FALGRAQEL ++LD+YW E + +PIY+++ L + Y+
Sbjct: 236 VNDIVNRGGRCLIPVFALGRAQELLLILDEYWGLHPELHD--IPIYYASSLAKKCMAVYQ 293
Query: 57 MLISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
I+ + ++K N F FK++ N + GPCV+ A+PG++ G S E+F+
Sbjct: 294 TYINAMNDRIKRQIAVNNPFVFKHITNLKSIDHFEDIGPCVIMASPGVMESGLSRELFEM 353
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
W N + + GY + GT+ ++S I + G K+ ++ + ++FS HTD +
Sbjct: 354 WCTDSKNGVIIAGYVVQGTLAKAILSEPEDITTMTGQKLPLKMSVDYISFSAHTDYQQTR 413
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPAN 212
+ + L P H++LVHGE+ +M LK + E IK Y+P N
Sbjct: 414 EFINILKPPHIVLVHGEQNEMQRLKSALVREYEENSEDIKVYNPRN 459
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 43/254 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + ++PIY+++ L + Y+ +S +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 66 VKETY----------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+K + A+DFK V + +SL D G CV+ A+PGM+ G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSL-KSLERFDDLGGCVMLASPGMMQSGTSR 368
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGTKI 150
E+ + WAP N + + GY + GT+ ++ I E E T I
Sbjct: 369 ELLERWAPDPRNGVIITGYSVEGTMAKHIVHEPDQIPAIMTRASNTARRPGQRENEQTMI 428
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI-----QSELGI 205
RC + + +F+ H DGK M+ V+ + VILVHGEK M LK ++ Q +
Sbjct: 429 PRRCTVQEYSFAAHVDGKENMEFVQEVGAPVVILVHGEKGNMTRLKSKLLSFNAQKTIPT 488
Query: 206 KCYDPANNESMCIP 219
K Y PAN E + IP
Sbjct: 489 KIYSPANCEELRIP 502
>gi|345311496|ref|XP_001519388.2| PREDICTED: integrator complex subunit 11-like, partial
[Ornithorhynchus anatinus]
Length = 359
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 121/235 (51%), Gaps = 35/235 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +W V + +AG N+
Sbjct: 133 VHETVERGGKVLIPVFALGRAQELCILLETFWL---TGVVVGVTAGTPTSPNL------- 182
Query: 61 WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
F F PG + TP G V P +
Sbjct: 183 -----------PFTPPGGSGF-------PGVARMGGTPA----GTERAVPSPLPPGAPAI 220
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKI-DVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+PGYC+ GT+G+K++SG +E+EG +I +V+ Q+ ++FS H D KGIM LV+ P
Sbjct: 221 --MPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLVRQAEP 278
Query: 180 QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIR 234
Q+V+LVHGE KM LK++I+ E + CY PAN E++ + + + G S ++
Sbjct: 279 QNVLLVHGEGKKMEFLKQKIEQEFRVNCYMPANGETVTLLTNPNIPVGISLGLLK 333
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQEL ++LD+YW E + +VPIY+++ L + +
Sbjct: 195 IHHTVSHGGRVLMPVFALGRAQELMLILDEYWAQHAEELGDGQVPIYYASNLARKCMSVF 254
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ ++L GP V+ A+PGML G S +
Sbjct: 255 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLKNLEEFQDLGPSVMLASPGMLQSGLSRD 313
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P E NL+ + GY + GT+ LM P++ + RC I +++F+ H
Sbjct: 314 LLERWCPDEKNLVLITGYSIEGTMAKYLMLEPDTIPSVNNPEVTVARRCNIEEISFAAHV 373
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ ++ ++ILVHGE M LK I S + ++P N
Sbjct: 374 DFQENLEFIQKINATNIILVHGESNPMGRLKSAILSNFNALKGTENEVHVFNPRN 428
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 245 IHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTY 304
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + + ID GP V+ A+PG L G S ++F
Sbjct: 305 INSMNERIRNQFAQSNPFHFKHIESLNS--IDNFHDVGPSVVMASPGGLQSGLSRQLFDK 362
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 363 WCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTS 422
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P +++LVHGE +M+ LK+++ S+ IK +P N +S+
Sbjct: 423 TFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSV 470
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 245 IHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTY 304
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + + ID GP V+ A+PG L G S ++F
Sbjct: 305 INSMNERIRNQFAQSNPFHFKHIESLNS--IDNFHDVGPSVVMASPGGLQSGLSRQLFDK 362
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 363 WCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTS 422
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P +++LVHGE +M+ LK+++ S+ IK +P N +S+
Sbjct: 423 TFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSV 470
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 26/236 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQEL ++LD+YW E N +VPIY+++ L ++ +
Sbjct: 228 IHSTVTKGGRVLMPVFALGRAQELMLILDEYWSHNEEELGNGQVPIYYASNLAKRSMSVF 287
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + +++ + N F FKN+ N D S D GP V+ A PGML G S
Sbjct: 288 QTYVNMMNDSIRKKFRDSKTNPFIFKNISYLKNID-SFQDF-GPSVMLAAPGMLQNGLSR 345
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P N++ + GY + G++ LM P++ I RCQ+ +++F+ H
Sbjct: 346 DLLEKWCPEPKNMVLITGYSVEGSMAKYLMLEPENIPSVNNPEVNIPRRCQVEEISFAAH 405
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + +D ++ + ++ILVHGE M LK + S + ++P N
Sbjct: 406 VDFQENIDFIEQIRASNIILVHGESNPMGRLKSALLSNFSSTKGTEDEVHVFNPRN 461
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 123/218 (56%), Gaps = 16/218 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQE+ ++LD+YW E + +VPIY+++ L + +
Sbjct: 229 IHSTVSRGGRVLLPVFALGRAQEIMLILDEYWSQHAEELGSGQVPIYYASNLAKKCMSVF 288
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + ++ + N F FKN+ ++ R+L + GP V+ A+PGML G S +
Sbjct: 289 QTYVNMMNDDIRRKFRDSQTNPFIFKNI-SYLRNLEEFQDFGPSVMLASPGMLQSGLSRD 347
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
V + W P E NL+ + GY + GT+ +M P+I + RC + +++F+ H
Sbjct: 348 VLEKWCPDEKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEVTVPRRCNVEEISFAAHV 407
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL 203
D + ++ ++ +S ++ILVHGE M LK I S
Sbjct: 408 DFQENLEFIEKISANNIILVHGESNPMGRLKSAILSNF 445
>gi|241951638|ref|XP_002418541.1| cleavage and polyadenylation factor specificity complex subunit,
putative; endonuclease, putative [Candida dubliniensis
CD36]
gi|223641880|emb|CAX43843.1| cleavage and polyadenylation factor specificity complex subunit,
putative [Candida dubliniensis CD36]
Length = 787
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 140/284 (49%), Gaps = 27/284 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALG AQEL ++LD+YW + V +++++ L + Y+
Sbjct: 238 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 297
Query: 59 ISWTSQKVK------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ K++ + N FDFK + + D S GP V+ ATPGML G S ++ +
Sbjct: 298 TGIMNDKIRLSSASSKKSNPFDFKFIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLE 357
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPHTDG 167
WAP NL+ L GY + GT+ +L+ PT+ T D+ R I +++F+ H D
Sbjct: 358 KWAPDGKNLVILTGYSVEGTMAKELLK-EPTMIQSATNPDLTIPRRIGIEEISFAAHVDF 416
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCIP 219
+ + ++ +SP VILVHG+ M LK + S+ +K Y+P N E + I
Sbjct: 417 QQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELKIG 476
Query: 220 STHYVKAGASDAFIRSCMNPNFQYLKSG-SEEKSVSGSKCTEGT 262
K + S Q LK +E S SK TE T
Sbjct: 477 ----FKGLKIAKVLGSLAEEQLQILKKVIQDEVSAENSKITELT 516
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 9/205 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+ + V GGG+ LIP FALGRAQEL ++LD+YW E +L+ +PIY+++ + +A Y+
Sbjct: 234 IERIVTGGGRCLIPVFALGRAQELLLILDEYWQEHPHLQSIPIYYASKMASRALRVYQTY 293
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+ + +++ + N F F ++ N D + D GP V+FA+PGML G S ++F
Sbjct: 294 ANMMNARIRAQMDLGNPFHFSHIRNLKSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDR 353
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WA N + L GY + T+ ++MS + LEG + + C + ++FS H D
Sbjct: 354 WAGDPKNGVMLAGYAVEHTLAKEIMSQPKEVVTLEGRRQPLNCLVDYVSFSAHVDFVQNR 413
Query: 172 DLVKFLSPQHVILVHGEKPKMATLK 196
D + ++P+++ILVHG K +M LK
Sbjct: 414 DFITSVNPRNIILVHGAKEEMGRLK 438
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 7/207 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNL-RVPIYFSAGLTIQANMYYKML 58
V V GG+ L+P FALGRAQEL ++L+++W +L ++PIY+++ L + Y+
Sbjct: 221 VQNVVQRGGRCLLPVFALGRAQELLLILEEHWGSNASLQKIPIYYASALAKRCMGVYQTY 280
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I ++++++ N F FK V N D GPCV+ A+PGML G S ++F+ W
Sbjct: 281 IGMMNERIQKLSLVRNPFAFKYVKNLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWC 340
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGYC+ GT+ +++S IE L G K+ + + ++FS H D
Sbjct: 341 SDSRNAVIIPGYCVDGTLAKEILSEPKEIEALNGKKLRLNMSVEYISFSAHVDFTQNSQF 400
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
++ P+H+ VHGE +M L+ IQ
Sbjct: 401 IEECQPKHLFFVHGEMNEMQRLRNVIQ 427
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 130/258 (50%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERM--NLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++L++YWER +VPIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILEEYWERHPEYQKVPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGNKNVAAGPWDFRYVRSL-RSLERFDDIGSCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-------------------GNPTI-ELE 146
E+ + WAPSE N + + GY + GT+ +L++ NP E +
Sbjct: 370 RELLERWAPSERNGVVMTGYSVEGTMAKQLLNEPEQIPATMSKSAAGPGSRANPMADEDQ 429
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC I +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 KVMIPRRCTIDEISFAAHVDGVENRNFIEQVAAPVVILVHGEKHQMMRLKSKLLSLNAEK 489
Query: 202 ELGIKCYDPANNESMCIP 219
+K Y PAN E + IP
Sbjct: 490 TNKVKVYTPANCEEIRIP 507
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-----NLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW R +VPI++++ L + +
Sbjct: 224 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSRHADELGGGQVPIFYASNLAKKCMSVF 283
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 284 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 343 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 402
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 403 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 457
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 50/262 (19%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K T +DFK +V N +R D G CV+ A+PGML G
Sbjct: 311 IKRLFRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLER--FDDVGGCVMLASPGMLQTGT 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------E 144
S E+ + WAPSE N + + GY + GT+G ++++ I E
Sbjct: 369 SRELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSARTAAGPGRGRIPDGDE 428
Query: 145 LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 429 EQKVMIPRRCTVEEISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNA 488
Query: 202 --ELGIKCYDPANNESMCIPST 221
+ +K Y P N E + IP T
Sbjct: 489 EKTVKVKIYSPTNCEEIRIPFT 510
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 50/262 (19%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K T +DFK +V N +R D G CV+ A+PGML G
Sbjct: 311 IKRLFRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLER--FDDVGGCVMLASPGMLQTGT 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------E 144
S E+ + WAPSE N + + GY + GT+G ++++ I E
Sbjct: 369 SRELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSARTAAGPGRGRIPDGDE 428
Query: 145 LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 429 EQKVMIPRRCTVEEISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNA 488
Query: 202 --ELGIKCYDPANNESMCIPST 221
+ +K Y P N E + IP T
Sbjct: 489 EKTVKVKIYSPTNCEEIRIPFT 510
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 50/262 (19%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K T +DFK +V N +R D G CV+ A+PGML G
Sbjct: 311 IKRLFRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLER--FDDVGGCVMLASPGMLQTGT 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------E 144
S E+ + WAPSE N + + GY + GT+G ++++ I E
Sbjct: 369 SRELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSARTAAGPGRGRIPDGDE 428
Query: 145 LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 429 EQKVMIPRRCTVEEISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNA 488
Query: 202 --ELGIKCYDPANNESMCIPST 221
+ +K Y P N E + IP T
Sbjct: 489 EKTVKVKIYSPTNCEEIRIPFT 510
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 123/215 (57%), Gaps = 13/215 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
V + V GGK L+P FALGRAQE+ ++LD+YW+ NL+ +PI++ + L ++ Y+
Sbjct: 261 VIEIVTRGGKCLLPVFALGRAQEILLILDEYWQANRNLQPIPIFYISPLAQKSLRVYETF 320
Query: 59 ISWTSQKVKE----TYNAFDFKNVHNFDRSL------IDAPGPCVLFATPGMLTGGFSLE 108
+ +KE +N F+F V + RS+ + A GPC++ +PGML GG SL+
Sbjct: 321 VGLCGDYIKECVYNGFNPFNFTFV-KYARSVAEISQYLQADGPCIVMTSPGMLQGGPSLQ 379
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
+F+ AP N + L GY + GT+ ++L + + I C + Q++FS H D
Sbjct: 380 IFEKIAPDSRNGVVLTGYTVKGTLADELRRDPEVVNVGHKTIKRLCSVDQISFSAHADYH 439
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL 203
+ ++ LS +VILVHGE+ +M +++++ E+
Sbjct: 440 QTKEFIRRLSVPNVILVHGERNEMTRMRDKLSEEI 474
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RS+ D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSV-RSIERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI----------ELE 146
E+ + WAPSE N + + GY + GT+G ++ MSG + + +
Sbjct: 370 RELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMAAGDDEQ 429
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 KVMIPRRCTVDEISFAAHVDGMENREFIEEVAAPVVILVHGEKNQMMRLKSKLLSLNADK 489
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN E + IP
Sbjct: 490 TVKVKVYTPANCEEVRIP 507
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERM--NLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 286 GGRALLPVFALGRAQELLLILDEYWAKHPEYQKFPIYYASNLARKCMVIYQTYVGAMNDN 345
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 346 IKRLFRERMAEAEASGDSAGKNGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 403
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+F+ WAPSE N + + GY + GT+ ++M P + E
Sbjct: 404 SRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIQAVMSRSIAGARRGPGSDSEKV 463
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S L
Sbjct: 464 LIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTL 523
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 524 KVKVYSPRNCEELRIP 539
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V V GG+ L+P FALGRAQEL ++L+++W ++PIY+++ L + Y+
Sbjct: 221 VQNVVQRGGRCLLPVFALGRAQELLLILEEHWSSNASLQKIPIYYASALAKRCMGVYQTY 280
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I ++++++ N F FK V N D GPCV+ A+PGML G S ++F+ W
Sbjct: 281 IGMMNERIQKLSLVRNPFAFKYVKNLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWC 340
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGYC+ GT+ +++S IE L G ++ + + ++FS H D
Sbjct: 341 SDSKNAVIIPGYCVDGTLAKEILSEPKEIEALNGKRLRLNMSVEYISFSAHVDFTQNSQF 400
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
++ P+H+ VHGE +M L+ IQ
Sbjct: 401 IEECQPRHLFFVHGEMNEMQRLRNVIQ 427
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 50/262 (19%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R +VPI++ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPDLQKVPIFYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K T +DFK +V N +R D G CV+ A+PGML G
Sbjct: 311 IKRLFRERMAEAEAKGDKSTTAGPWDFKFVRSVRNLER--FDDVGGCVMLASPGMLQTGT 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTIEL---------- 145
S E+ + WAPSE N + + GY + GT+G ++ MS I L
Sbjct: 369 SRELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSARTGIGLGRGRIPDGDD 428
Query: 146 -EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--- 201
+ I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 429 EQKVMIPRRCTVEEISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNA 488
Query: 202 --ELGIKCYDPANNESMCIPST 221
+ +K Y P+N E + IP T
Sbjct: 489 EKTVKVKIYSPSNCEEIRIPFT 510
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 20/231 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H ++ GG+VLIPA+ALGRAQEL ++LD+YW VPIY+++ L + Y+
Sbjct: 237 IHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTY 296
Query: 59 ISWTSQKVKETY---NAFDFKN------VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ +++++ + N FDFK+ + NF+ GP V+ A+PG L G S ++
Sbjct: 297 INSMNERIRNQFANSNPFDFKHISPLKSIENFNDV-----GPSVVMASPGGLQSGLSRQL 351
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGK 168
F W + N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 352 FDMWCSDKKNACVIPGYVVGGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFA 411
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 412 QTSTFLKELMPPNIILVHGEANEMGRLKQKLITQFADCNTKIISPKNCQSV 462
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 123/246 (50%), Gaps = 35/246 (14%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALG AQEL ++L+DYW R R PIYF++ L + + Y+ I ++
Sbjct: 257 GGRALLPTFALGGAQELLLILEDYWARHPEYQRFPIYFASSLARKCMVVYQTYIDAMNEN 316
Query: 66 VKETYNA-----------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKH 112
++ + A +DF+++ + +SL D G CV+ A+PGML G S + +
Sbjct: 317 IRTKFQAAQANPDGVGGPWDFQHIRSL-KSLERFDDVGGCVMLASPGMLQNGVSRSLLER 375
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMS-------------------GNPTIELEGTKIDVR 153
WAP N + + GY + GT+ +M G T E I R
Sbjct: 376 WAPDAKNGVIITGYSVEGTMAKSIMLEPDSIPAVMTNRQPQTVILGKRTGADENVMIPRR 435
Query: 154 CQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANN 213
C + + +F+ H DG+ ++ ++ VILVHGEK M LK R+ S +K Y PAN
Sbjct: 436 CTVQEFSFAAHVDGQENRTFIEEVNAPVVILVHGEKHNMNRLKSRLLSLQKMKVYSPANC 495
Query: 214 ESMCIP 219
E + IP
Sbjct: 496 EELHIP 501
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 44/254 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW+R + +VPIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWDRHSEYQKVPIYYASNLARKCMVVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK ++ N DR D GPCV+ A+PGML G
Sbjct: 310 IKRLFRERLAEAEAAGNVGTGGGPWDFKFIRSLKNLDR--FDDLGPCVMLASPGMLQTGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-------------LEGTKIDV 152
S E+ + WAPS+ N + + GY + GT+ ++M I +G K+ +
Sbjct: 368 SRELLERWAPSDKNGVVITGYSVEGTMAKQIMQEPDQIHAVMTRNAAAASRRADGEKLMI 427
Query: 153 --RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGI 205
RC + + +F+ H DG + ++ ++ VILVHGE M LK ++ S +
Sbjct: 428 PRRCSVAEFSFAAHVDGTENREFIEEVNAPVVILVHGEVNNMMRLKSKLLSLNANKTEKV 487
Query: 206 KCYDPANNESMCIP 219
K + P N E + IP
Sbjct: 488 KVFSPRNCEELRIP 501
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + V+ GGKVLIPAFALGRAQEL ++LD+YWE +PIY+++ L + Y+
Sbjct: 232 VAQTVSQGGKVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTY 291
Query: 59 ISWTSQKVK---ETYNAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
I+ + +++ E N FDFK++ N D D GP V+ A+PG L G S ++F
Sbjct: 292 INAMNDRIQKQFEVSNPFDFKHIQPLKNIDG--FDDIGPAVVMASPGGLQSGLSRQLFDI 349
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +M+ + L G + + ++H ++FS H D
Sbjct: 350 WCQDKKNSCIIPGYVVEGTLAKAIMNEPKEVTLLSGLVVPLNMRVHYISFSAHADFTQTN 409
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
+ L P ++ILVHGE +M LK ++ ++ +K P N +++
Sbjct: 410 AFLHELRPPNIILVHGEANEMGRLKAKLITQFAEQNVKILSPKNCQTV 457
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+ + V GGG+ LIP FALGRAQEL ++LD+YW E +L+ VP+Y+++ + +A Y+
Sbjct: 233 IERIVTGGGRCLIPVFALGRAQELLLILDEYWQEHPHLQSVPVYYASKMASRALRVYQTY 292
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+ + +++ + N F F+++ N D + D GP V+FA+PGML G S ++F
Sbjct: 293 ANMMNARIRTQMDLGNPFSFRHIRNLKSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDR 352
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WA N + + GY + T+ ++MS + +EG + + C + ++FS H D
Sbjct: 353 WATDPKNGVLIAGYAVEHTLAKEIMSQPKEVVTMEGRRQPLNCLVDYVSFSAHVDFVQNR 412
Query: 172 DLVKFLSPQHVILVHGEKPKMATLK 196
D + ++P+++ILVHG K +M LK
Sbjct: 413 DFITNVNPRNIILVHGAKEEMGRLK 437
>gi|299116292|emb|CBN76100.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 752
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 7/213 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKML 58
V K V GG+ LIP FALGRAQEL ++LD+YW+ R +PIY+++ L + Y M+
Sbjct: 124 VSKAVKKGGRCLIPVFALGRAQELLLILDEYWQQHRELHHIPIYYASRLA--SKTYINMM 181
Query: 59 ISWTSQKVKETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
Q++ + N F F+++ N D GP V+ A+PGML G S +F W +
Sbjct: 182 NEHIRQQM-DVANPFKFQHITNLKSIDQFDDSGPSVVMASPGMLQSGVSRMLFDRWCTDD 240
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + +PGY + GT+ KL+S ++ ++G RC++ ++FS H D ++
Sbjct: 241 KNSVLIPGYSVEGTLAKKLLSMPDEVQGMDGRVRQRRCEVEYISFSAHVDFVQNKGFIEG 300
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYD 209
+ P +VILVHGE+ M LK ++ + + D
Sbjct: 301 VQPANVILVHGEETGMLRLKTELEKQFAMVPQD 333
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 258 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 317
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RS+ D G CV+ A+PGML G S
Sbjct: 318 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSV-RSIERFDDVGGCVMLASPGMLQTGTS 376
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI----------ELE 146
E+ + WAPSE N + + GY + GT+G ++ MSG + + +
Sbjct: 377 RELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMAAGDDEQ 436
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 437 KVMIPRRCTVDEISFAAHVDGMENREFIEEVAAPVVILVHGEKNQMMRLKSKLLSLNADK 496
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN E + IP
Sbjct: 497 TVKVKVYTPANCEEVRIP 514
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 10/226 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
+H VA GG+VLIPAFALGRAQEL ++LD+YW +L +PIY+++ L + Y+
Sbjct: 236 IHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTY 295
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I + +++ + N F FK++ + + GP V+ ATPG L G S ++F W
Sbjct: 296 ILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWC 355
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 356 SDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 415
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ +E K P N ES+
Sbjct: 416 LKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESV 461
>gi|406601461|emb|CCH46911.1| hypothetical protein BN7_6516 [Wickerhamomyces ciferrii]
Length = 679
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 23/233 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALG AQEL ++LD+YW + +L V +Y+++ L + ++
Sbjct: 191 IHSTLIKGGRVLLPVFALGTAQELLLILDEYWSQHQDLENVNVYYASSLAKKCLAVFQTY 250
Query: 59 ISWTSQKVKETY-----NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
I+ + +++ + N F FK N+ N D+ D GPCV+ A+PGML G S E+
Sbjct: 251 INMMNDNIRKQFRDQNSNPFQFKYIKNIKNLDK--FDDFGPCVVVASPGMLQNGVSRELL 308
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGN---PTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ WAP N + L GY + GT+ L++ P+++ + R I +++F+ H D
Sbjct: 309 ERWAPDSRNSVILTGYSVEGTLAKTLLTEPDHIPSLQNPDNNVPRRLNIEEISFAAHVDY 368
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--------ELGIKCYDPAN 212
+ ++ + P+ +ILVHGE M LK + S E ++ Y+P N
Sbjct: 369 EQNSKFIELVDPKSIILVHGESNPMGRLKSALLSKYSKFKGTENEVRVYNPRN 421
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 231 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 290
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 291 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 350 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNSEITIPRRCQVEEISFAAHV 409
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--------ELGIKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S E + ++P N
Sbjct: 410 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFVSLKGTENEVHVFNPRN 464
>gi|365764103|gb|EHN05628.1| Ysh1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 699
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 151 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 210
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 211 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 269
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 270 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 329
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 330 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 384
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RS+ D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSV-RSIERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI----------ELE 146
E+ + WAPSE N + + GY + GT+G ++ MSG + + +
Sbjct: 370 RELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMAAGDDEQ 429
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 KVMIPRRCTVDEISFAAHVDGMENREFIEEVAAPVVILVHGEKNQMMRLKSKLLSLNADK 489
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN E + IP
Sbjct: 490 TVKVKVYTPANCEEVRIP 507
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 10/226 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
+H VA GG+VLIPAFALGRAQEL ++LD+YW +L +PIY+++ L + Y+
Sbjct: 236 IHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTY 295
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I + +++ + N F FK++ + + GP V+ ATPG L G S ++F W
Sbjct: 296 ILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWC 355
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 356 SDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 415
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ +E K P N ES+
Sbjct: 416 LKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESV 461
>gi|323336337|gb|EGA77605.1| Ysh1p [Saccharomyces cerevisiae Vin13]
Length = 745
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 197 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 256
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 257 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 315
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 316 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 375
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 376 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKXTDNEVHVFNPRN 430
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 45/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE+ +VPIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI------------------ELEGT 148
E+ + WAP+E N + + GY + GT+ +L++ I E +
Sbjct: 370 RELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRAASGLARRGGNDEEQKV 429
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + +++F+ H DG + ++ +S VILVHGEK +M LK ++ S +
Sbjct: 430 MIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTV 489
Query: 204 GIKCYDPANNESMCIP 219
+K Y PAN E + IP
Sbjct: 490 KVKVYTPANCEEVRIP 505
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + R PIY+++ L + + Y+ + +
Sbjct: 264 GGRALLPVFALGRAQELLLILDEYWGKHPEFQRFPIYYASNLARKCMVIYQTYVGAMNDN 323
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 324 IKRLFRERMAEAEASGDAAGKNGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 381
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+F+ WAPSE N + + GY + GT+ ++M P + E
Sbjct: 382 SRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIQAVMSRSIAGARRGPGADSEKV 441
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 442 LIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTT 501
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 502 KVKVYSPRNCEELRIP 517
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 231 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 290
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 291 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 350 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 409
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 410 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 464
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 45/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE+ +VPIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI------------------ELEGT 148
E+ + WAP+E N + + GY + GT+ +L++ I E +
Sbjct: 370 RELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRAASGLARRGGNDEEQKV 429
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + +++F+ H DG + ++ +S VILVHGEK +M LK ++ S +
Sbjct: 430 MIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTV 489
Query: 204 GIKCYDPANNESMCIP 219
+K Y PAN E + IP
Sbjct: 490 KVKVYTPANCEEVRIP 505
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 45/255 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + +VPIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHQEYQKVPIYYASNLARKCMVVYQTYVGAMNDN 309
Query: 66 VKETYN------------------AFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGG 104
+K + +DFK + N DR D GPCV+ A+PGML G
Sbjct: 310 IKRLFRERLAEAEASGKSGAGGGGPWDFKYIRSLKNLDR--FDDLGPCVMLASPGMLQNG 367
Query: 105 FSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------ELEGTK 149
S E+ + WAPS+ N + + GY + GT+ ++M I + E
Sbjct: 368 VSRELLERWAPSDKNGVVITGYSVEGTMAKQIMQEPEQIPAIMTRNAAAASRRADGEKPM 427
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELG 204
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 428 IPRRCSVAEFSFAAHVDGTENREFIEEVAAPVVILVHGEQNNMMRLKSKLLSLNATKTEK 487
Query: 205 IKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 VKIYSPRNCEELRIP 502
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 231 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 290
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 291 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 350 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 409
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 410 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 464
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 231 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 290
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 291 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 350 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 409
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 410 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 464
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 125/234 (53%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW++ V IY+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPTFALGRAQELLLILDEYWKKHPDLHNVTIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ N ++R + D P PCV+ A+PG L G S E
Sbjct: 284 IHTMNANIRSRFAKRDNPFVFKHISNLAQPRGWERKIADGP-PCVVLASPGFLQSGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMS-GNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ +M+ + + L+G I + + ++FS H D
Sbjct: 343 LLELWAPDPRNGLIVTGYSVEGTLARDIMNEPDEIMSLKGNPIPRKISVDYISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
D ++ + QHV+LVHGE+ M L+ + S +K + P N E++
Sbjct: 403 TQNSDFIEQVKAQHVVLVHGEQTAMGRLRAAMTSRYKDRDEDVKIHTPRNLETL 456
>gi|323303815|gb|EGA57598.1| Ysh1p [Saccharomyces cerevisiae FostersB]
Length = 727
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 197 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 256
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 257 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 315
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 316 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 375
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 376 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 430
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 45/255 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 259 GGRALLPVFALGRAQELLLILDEYWGKHAEFQKYPIYYASNLAKKCMLIYQTYVGAMNDN 318
Query: 66 VKETY----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFS 106
+K + +DFK + N DR D G CV+ A+PGML G S
Sbjct: 319 IKRLFRERMAEAETSGGAGAGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGVS 376
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----------------EGTK 149
E+F+ WAP++ N + + GY + GT+ ++M I+ E
Sbjct: 377 RELFERWAPNDKNGVIITGYSVEGTMARQIMKEPEQIQAVMSRSIAGARRAPGGDGEKVM 436
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELG 204
I +RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S +
Sbjct: 437 IPLRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQTNMMRLKSKLLSLNANKTVK 496
Query: 205 IKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 497 VKVYSPRNTEELRIP 511
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 12/233 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
V V GGK L+P FALGRAQEL ++LD++WE R +L+ +PI +++ L + Y+
Sbjct: 224 VSDVVKRGGKCLLPVFALGRAQELLLILDEFWEARKDLQGIPILYASALAKRFMAVYQTY 283
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + +++ E N F FK+V N + GPCV+ A+PGML G S ++F+ W
Sbjct: 284 LNMMNDRIQGMAEISNPFHFKHVQNIKNIEAYEDRGPCVMMASPGMLQNGLSRDLFEMWC 343
Query: 115 PSEMNLITLPGYCLAGTIGNKLM-SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N +PGYC+ GT+ L+ + L+G K+ VR I ++FS H D +
Sbjct: 344 GDKRNGCIIPGYCVEGTLAKDLLCEPDEITSLKGNKLVVRSSIDYISFSAHVDFLQNAEF 403
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI--QSEL---GIKCYDPANNESMCIPST 221
++ V+LVHGE +M LK + +SE I + P N E + I T
Sbjct: 404 IEGCKVSEVVLVHGESSEMNRLKSALVHRSEAKSENITIHTPRNGEWVHIKGT 456
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG L+P FALGRAQEL ++L+DYW++ VPIY+++ L + Y+
Sbjct: 224 VHSIIRRGGHALLPVFALGRAQELLLILEDYWKKHPDLHNVPIYYASNLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK+V N +++ + + P PCV+ TPGML G S E
Sbjct: 284 IHTMNSNIRSRFAKRDNPFVFKHVSNIPQVRGWEKRIAEGP-PCVILCTPGMLQPGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ +++ I ++G I R + ++FS H DG
Sbjct: 343 LLELWAPDPRNGLIITGYSVEGTLARDIVNEPQEIPSVKGDSIPRRLSVDYISFSAHVDG 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESM 216
++ ++ + QH++LVHG+ M L+ +Q E IK + P N E++
Sbjct: 403 PQNIEFIEQVKAQHIVLVHGDAAAMNRLRVSLQQRYKDREEEIKIHTPRNLETL 456
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 231 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHTDELGGGQVPIFYASNLAKKCMSVF 290
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 291 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 350 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 409
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--------ELGIKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S E + ++P N
Sbjct: 410 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFVSLKGTESEVHVFNPRN 464
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 10/226 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
+H VA GG+VLIPAFALGRAQEL ++LD+YW +L +PIY+++ L + Y+
Sbjct: 236 IHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTY 295
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I + +++ + N F FK++ + + GP V+ ATPG L G S ++F W
Sbjct: 296 ILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWC 355
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 356 SDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 415
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ +E K P N ES+
Sbjct: 416 LKELMPPNIILVHGEANEMMRLKQKLFTEFPDGNTKIMTPKNCESV 461
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 260 GGRALLPVFALGRAQELLLILDEYWGKHTEFQKFPIYYASNLARKCMVIYQTYVGAMNDN 319
Query: 66 VKETYNA-----------------FDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 320 IKRLFRERMAEAEASGDGAGKNGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 377
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+F+ WAPSE N + + GY + GT+ ++M P + E
Sbjct: 378 SRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIQAVMSRSIAGARRGPGADSEKV 437
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 438 LIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTT 497
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 498 KVKVYSPRNCEELRIP 513
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 45/255 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWGKHSEFQKYPIYYASNLAKKCMLIYQTYVGAMNDN 309
Query: 66 VKETY----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFS 106
+K + +DFK + N DR D G CV+ A+PGML G S
Sbjct: 310 IKRLFRERMAEAETSGEAGAGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGVS 367
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----------------EGTK 149
E+F+ WAPS+ N + + GY + GT+ ++M I+ E
Sbjct: 368 RELFERWAPSDKNGVIITGYSVEGTMARQIMKEPEQIQAVMSRSIAGARRAPGGDGEKVM 427
Query: 150 IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELG 204
I +RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 428 IPLRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQTNMMRLKSKLLSLNANKTTK 487
Query: 205 IKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 VKVYSPRNTELLRIP 502
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW + ++PIY+++ L + Y+
Sbjct: 242 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTY 301
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + + ID GP V+ A+PG L G S ++F
Sbjct: 302 INSMNERIRNQFAQSNPFHFKHIESLNS--IDNFHDVGPSVVMASPGGLQSGLSRQLFDK 359
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +++ + L G + +H ++FS H D
Sbjct: 360 WCTDKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTS 419
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ + L P ++ILVHGE +M+ LK+++ ++ K P N +S+
Sbjct: 420 NFLDELRPPNIILVHGEANEMSRLKQKLITQFDGTNTKIVSPKNCQSV 467
>gi|403222958|dbj|BAM41089.1| cleavage and polyadenylation specificty factor subunit [Theileria
orientalis strain Shintoku]
Length = 700
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 118/207 (57%), Gaps = 13/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYW--ERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GK L+P FALGR+QE+ ++LD+YW R VPI++ + L ++ Y+ + +
Sbjct: 262 GKCLLPVFALGRSQEILLILDEYWANNRQLQNVPIFYISPLASKSLKVYETFVGLCGDYI 321
Query: 67 KET----YNAFDFKNVHNFDRSL------IDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
KE+ +N F+FK V + RS+ + GPC++ +PGML GG SLEVF+ +P
Sbjct: 322 KESIYNGHNPFNFKFV-KYARSVRQIRNYLLREGPCIIMTSPGMLQGGPSLEVFELISPD 380
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + L GY + GT+ ++L I L I RC + Q++FS H D + +K
Sbjct: 381 NRNGVVLTGYTVKGTLADELKKDPELINLGTKVIKPRCSVEQISFSAHADYNQTKEFIKK 440
Query: 177 LSPQHVILVHGEKPKMATLKERIQSEL 203
LS +VILVHGE+ +M +++++ ++
Sbjct: 441 LSVPNVILVHGERGEMKRMRDKLIEDI 467
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 3/96 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMN++ PIYFS GLT +AN YYK+ I+
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNMKAPIYFSTGLTEKANHYYKLFIT 284
Query: 61 WTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCV 93
WT+QK+++T+ N F+FK++ FDRS D PGP V
Sbjct: 285 WTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMV 320
>gi|384252038|gb|EIE25515.1| Metallo-hydrolase/oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 696
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 117/210 (55%), Gaps = 8/210 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLR-VPIYFSAGLTIQANMYYKML 58
+ V GG+ L+P ALGRAQEL ++L+DYW+R +LR VPIY ++GL +A ++
Sbjct: 225 IRAVVQRGGRCLLPVVALGRAQELMLILEDYWDRNADLRGVPIYQASGLARRALGIFQTY 284
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I+ + +K + N F+FK + + +D GPCV+ ATP ML G S E+F W
Sbjct: 285 IAMMNDDIKAAFGQSANPFNFKYITELKTQGGLDDVGPCVVLATPSMLQSGLSRELFDAW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLM-SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ N + + + + GT+ ++ S + + G K+ +R + ++FS H D
Sbjct: 345 CEDKRNGVIIADFAVQGTLARDILASPSHVLTKAGAKVPLRMSVEHISFSAHADFDQTSQ 404
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSE 202
V+ L P HVILVHGE +M L++ ++ +
Sbjct: 405 FVELLDPPHVILVHGEAVEMGRLRKALEQQ 434
>gi|255724858|ref|XP_002547358.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
gi|240135249|gb|EER34803.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
Length = 783
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 22/239 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V GG+VL+P FALG AQEL ++LD+YW + V +++++ L + Y+
Sbjct: 237 IHATVTKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 296
Query: 59 ISWTSQKVK------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ K++ E N FD K + + D S GP V+ ATPGML G S ++ +
Sbjct: 297 TGIMNDKIRLSSSSGEKSNPFDLKFIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLE 356
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPHTDG 167
WAP NL+ L GY + GT+ +L+ PT+ T D+ R I +++F+ H D
Sbjct: 357 KWAPDNKNLVILTGYSVEGTMAKELLK-EPTMIQSATNPDLTIPRRIGIEEISFAAHVDF 415
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCI 218
+ + + +SP +ILVHG+ M LK + S+ +K Y+P N E + I
Sbjct: 416 QQNSEFIDKVSPSKIILVHGDSVPMGRLKSALLSKYSARKGTDQEVKVYNPKNCEELKI 474
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 24/233 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
+H ++ GG+VLIPAFALGRAQEL ++LD+YW E N +PIY+++ L + Y+
Sbjct: 231 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHN--IPIYYASPLAKRCMAVYQ 288
Query: 57 MLISWTSQKVKETY---NAFDFKN------VHNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
I+ +++++ + N FDFK+ + NF+ GP V+ A+P L G S
Sbjct: 289 TYINSMNERIRNQFANSNPFDFKHISPLKSIENFNDV-----GPSVVMASPSGLQSGLSR 343
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTD 166
++F W + N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 344 QLFDMWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHAD 403
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 404 FAQTSTFLKELMPPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSV 456
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 130/235 (55%), Gaps = 21/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+PAFALGRAQEL ++LD+YW++ +L VPIY+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK + N +++ + + P PCV+ A+PG + G S E
Sbjct: 284 IHTMNANIRTRFAKRDNPFVFKYISNLPQTRGWEKKIAEGP-PCVVLASPGFMQVGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTD 166
+F+ WAP N + + GY + GT+ +M+ P I L+G I + + ++FS H D
Sbjct: 343 LFELWAPDARNGLIITGYSIEGTLARDIMT-EPEDFIGLKGNTIPRKISVDYISFSAHVD 401
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
+ ++ + QHV+LVHGE+ M L+ + ++ +K + P N E++
Sbjct: 402 YAQNSEFIQAVKAQHVVLVHGEQNTMGRLRAAMAAKFKERDEDVKIHTPRNLETL 456
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V V GG+ L+P FALGRAQEL ++L+++W ++PIY+++ L + Y+
Sbjct: 221 VQNVVQRGGRCLLPVFALGRAQELLLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTY 280
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I ++++++ N F FK V N D GPCV+ A+PGML G S ++F+ W
Sbjct: 281 IGMMNERIQKLSLVRNPFAFKYVKNLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWC 340
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGYC+ GT+ +++S IE + G K+ + + ++FS H D
Sbjct: 341 SDSKNAVIIPGYCVDGTLAKEILSEPKEIEAMNGKKLRLNMSVEYISFSAHVDFTQNSQF 400
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
++ P+++ VHGE +M LK IQ
Sbjct: 401 IEECQPKYLFFVHGEMNEMQRLKNVIQ 427
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 20/231 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H ++ GG+VLIPAFALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTY 297
Query: 59 ISWTSQKVKETY---NAFDFKN------VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ +++++ + N FDFK+ + NF+ GP V+ A+P L G S ++
Sbjct: 298 INSMNERIRNQFANSNPFDFKHISPLKSIENFNDV-----GPSVVMASPSGLQSGLSRQL 352
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGK 168
F W + N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 353 FDMWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFA 412
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 413 QTSTFLKELMPPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSV 463
>gi|402217247|gb|EJT97328.1| Metallo-hydrolase/oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 780
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 17/233 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H+ + GG VL+P FA+G AQEL ++LDD++E+ + PIY+++ L + Y+
Sbjct: 231 IHRILMRGGHVLMPVFAVGGAQELLLILDDFFEKHPELHKFPIYYASALARKCMAVYQGY 290
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFDRSL-----IDAPGPCVLFATPGMLTGGFSLEV 109
+ + +++ + N F F++V + RS I PCV+ A+PGM+ G S E+
Sbjct: 291 VHVMNNNIRQRFANNQNPFVFRHVSHIPRSSGWEKKIGEGPPCVILASPGMMQSGASREL 350
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGK 168
+ WAP N I L GY + G++ +M+ I ++GT I +RC + ++FS H D
Sbjct: 351 LEMWAPDRRNGIVLTGYSVEGSMARNIMNEPDEINAMKGTPIPLRCTVDNISFSAHVDYA 410
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESM 216
+ ++ + HV+LVHGE+ +M LK +Q+ I + P N E++
Sbjct: 411 QNREFIEAIGAPHVVLVHGEQSQMFRLKAALQAGYKERNEHITIHTPKNCETL 463
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 11/222 (4%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FA+GRAQEL +LLD+YW + R PI +G+ + Y+ I+ + +
Sbjct: 247 GGRVLLPVFAIGRAQELLLLLDEYWRKNPELHRYPIICLSGMAKRCIASYQTYINQMNNR 306
Query: 66 VK---ETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
++ + N F+F+++ + PCV+ A+PGML G S ++F W N +
Sbjct: 307 IRHLNDIENPFEFRHIRYMTTMAEFQDNCPCVVMASPGMLQNGPSRDLFDRWCEYRHNSV 366
Query: 122 TLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+ GYC+ T+ +L+ P +G ++ ++ ++H ++FS H D + L P
Sbjct: 367 VITGYCVQNTLAKELLDAQPATHTLQDGKEVPLKIRVHYISFSAHADFIQTSQFIDELRP 426
Query: 180 QHVILVHGEKPKMATLKERIQSE---LGIKCYDPANNESMCI 218
H++LVHGE MA+LK+++ S+ +G+ + P N E++ +
Sbjct: 427 SHIVLVHGEANMMASLKKQLVSKYEHMGVGVWSPQNTENVTL 468
>gi|323307973|gb|EGA61229.1| Ysh1p [Saccharomyces cerevisiae FostersO]
Length = 727
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 24/235 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQE+ ++LD+YW E +VPI++++ L + +
Sbjct: 197 IHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVF 256
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + + + + N F FKN+ ++ R+L D GP V+ A+PGML G S +
Sbjct: 257 QTYVNMMNDDIXKKFRDSQTNPFIFKNI-SYLRNLEDFQDFGPSVMLASPGMLQSGLSRD 315
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P+I I RCQ+ +++F+ H
Sbjct: 316 LLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHV 375
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPAN 212
D + ++ ++ +S ++ILVHGE M LK + S + ++P N
Sbjct: 376 DFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRN 430
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 16/231 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
+H ++ GG+VLIPAFALGRAQEL ++LD+YW E N +PIY+++ L + Y+
Sbjct: 239 IHSTISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHN--IPIYYASPLAKKCMTVYQ 296
Query: 57 MLISWTSQKVKETY---NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLEVFK 111
I +++++ + N F FK++ + S+ D GP V+ A+PG L G S ++F
Sbjct: 297 TYILSMNERIRNQFANSNPFKFKHISPLN-SIEDFSDVGPSVVMASPGGLQSGLSRQLFD 355
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGI 170
W + N +PGY + GT+ +++ ++L G + Q+H ++FS H D
Sbjct: 356 MWCSDKKNACVIPGYVVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQT 415
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCI 218
+K L P ++ILVHGE +M LK+++ +E K P N +S+ I
Sbjct: 416 STFLKELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEI 466
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW + VP+Y+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPTFALGRAQELLLILDEYWAKHPDLHNVPVYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + V+ + N F FK++ N ++R + + P PCV+ A+PG + G S E
Sbjct: 284 IHTMNANVRTRFAKHDNPFVFKHITNVPGTRGWERKIAEGP-PCVVLASPGFMQTGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + + GY + GT+ ++++ I ++G I + + ++FS H D
Sbjct: 343 LLELWAPDGRNGLIVTGYSIEGTMAREILTEPEEITTMKGNTIPRKISVDYMSFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESM 216
+ ++ + PQH++LVHGE M LK +Q IK + P N +++
Sbjct: 403 SQNSEFMELVKPQHIVLVHGEATGMGRLKAAMQDRYKSRDEEIKIHTPRNLDTL 456
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 49/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNEN 310
Query: 66 VKETY--------------------NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + N ++V N +R D G CV+ A+PGML G
Sbjct: 311 IKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIER--FDDVGGCVMLASPGMLQTGT 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI----------EL 145
S E+ + WAP+E N I + GY + GT+G ++ MSG + E
Sbjct: 369 SRELLERWAPNERNGIIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMTGGDEE 428
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ + VILVHGEK +M LK ++ S
Sbjct: 429 QKVMIPRRCTVDEISFAAHVDGVENREFIEEVGAPVVILVHGEKHQMMRLKSKLLSLNAD 488
Query: 202 -ELGIKCYDPANNESMCIP 219
++ +K + PAN E + IP
Sbjct: 489 KKVKVKVFTPANCEEVRIP 507
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++L++YWE ++PIY+ + + Y+ I +
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYWETHPDLQKIPIYYIGNTARRCMVVYQTYIGAMNDN 309
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 310 IKRLFRQRMAEAEASGDKSASAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 368
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI--------------------ELE 146
E+ + WAP+E N + + GY + GT+ +L++ I E +
Sbjct: 369 RELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPDQIPAVMSRAPGGLSRRGLASGDEEQ 428
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 429 KIMIPRRCTVDEISFAAHVDGVENRNFIEQVAAPVVILVHGEKHQMMRLKSKLLSLNADK 488
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN E +CIP
Sbjct: 489 TVKVKVYTPANCEEVCIP 506
>gi|440493393|gb|ELQ75870.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) [Trachipleistophora hominis]
Length = 801
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 13/215 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER--MNLRVPIYFSAGLTIQANMYYKML 58
V+ V GGK L+P FALGRAQEL ++L+DYWER VPIY+++ L + Y+
Sbjct: 293 VNDIVTRGGKCLLPVFALGRAQELLLILEDYWERNPQLHNVPIYYASALANRCLSIYQAY 352
Query: 59 ISWTSQKVKETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ K+K+ +AF FK++ N D LI CV+ A+PGML G S E+F+ W
Sbjct: 353 THMMNLKIKK--DAFTFKHIRNLKSVDNHLI--KNACVVMASPGMLQSGLSRELFESWCE 408
Query: 116 SEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
N +PGYC+ GT+ ++M+ + + G ++ + ++ ++FS H D +
Sbjct: 409 DANNGTVIPGYCVQGTLAKEIMTEPKEIVAMNGHRLRLNMRVEYISFSAHVDYVQNTSFI 468
Query: 175 KFLSPQHVILVHGEKPKMATLK---ERIQSELGIK 206
+ +P V+LVHGE +M LK E+ S L +K
Sbjct: 469 EKCTPMIVMLVHGEVNEMMRLKAALEKRHSVLALK 503
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+PAFALGRAQEL ++LD+YW+R +L VPIY+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPAFALGRAQELLLILDEYWKRHPDLHNVPIYYASNLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ N ++R + + P PCV+ A+PG G S E
Sbjct: 284 IHTMNSNIRTRFAKRDNPFVFKHISNLPQPKGWERKIAEGP-PCVVLASPGFCQSGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N L GY + GT+ +++ + + +G I + + ++FS H D
Sbjct: 343 LLELWAPDARNGFILTGYSVEGTMARDILNEPDEIMSTKGNIIPRKISVDYISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESM 216
+ + + QH++LVHGE+ M L+ + S E +K + P N E++
Sbjct: 403 SQNAEFIDLVKAQHIVLVHGEQTAMGRLRGALTSKYKDREEDVKIHTPRNLETL 456
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 49/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNEN 310
Query: 66 VKETY--------------------NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + N ++V N +R D G CV+ A+PGML G
Sbjct: 311 IKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIER--FDDVGGCVMLASPGMLQTGT 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI----------EL 145
S E+ + WAP+E N I + GY + GT+G ++ MSG + E
Sbjct: 369 SRELLERWAPNERNGIIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMTGGDEE 428
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ + VILVHGEK +M LK ++ S
Sbjct: 429 QKVMIPRRCTVDEISFAAHVDGVENREFIEEVGAPVVILVHGEKHQMMRLKSKLLSLNAD 488
Query: 202 -ELGIKCYDPANNESMCIP 219
++ +K + PAN E + IP
Sbjct: 489 KKVKVKVFTPANCEEVRIP 507
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 25/281 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALG AQEL ++LD+YWE+ V +Y+ + L + Y+
Sbjct: 239 IHATITKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYETY 298
Query: 59 ISWTSQKVK-------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ K++ N FDFK + + + S GP V+ ATPGML G S ++
Sbjct: 299 TGIMNDKIRLSSSSDDSKSNPFDFKYIKSIRNLSKFSDLGPSVVVATPGMLQAGVSRQLL 358
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDV--RCQIHQLAFSPHTDG 167
+ WAP + NL+ L GY + GT+ L+ I+ L + + R I +++F+ H D
Sbjct: 359 EKWAPEQKNLVILTGYSVEGTMAKDLLKEPQVIQSLNNPDLSIPRRIGIEEISFAAHVDF 418
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCIP 219
+ + + +SP +ILVHG+ M LK + S+ +K ++P N E + I
Sbjct: 419 QQNSEFIDKVSPSRIILVHGDSVPMGRLKSALLSKYSSRKGTDKEVKVFNPRNCEELNIA 478
Query: 220 STHYVKAGASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTE 260
K + S Q LK EEK TE
Sbjct: 479 ----FKGLKIAKVLGSLAEAQLQALKQEIEEKITEADDATE 515
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 130/259 (50%), Gaps = 49/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 255 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNEN 314
Query: 66 VKETY--------------------NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + N ++V N +R D G CV+ A+PGML G
Sbjct: 315 IKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIER--FDDVGGCVMLASPGMLQTGT 372
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI----------EL 145
S E+ + WAP+E N + + GY + GT+G ++ MSG + E
Sbjct: 373 SRELLERWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGKNAVGPARRMTGGDEE 432
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ + VILVHGEK +M LK ++ S
Sbjct: 433 QKVMIPRRCTVDEISFAAHVDGVENREFIEEVGAPVVILVHGEKHQMMRLKSKLLSLNAD 492
Query: 202 -ELGIKCYDPANNESMCIP 219
++ +K + PAN E + IP
Sbjct: 493 KKIKVKVFTPANCEEVRIP 511
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V V GG+ L+P FALGRAQEL ++L+++W ++PIY+++ L + Y+
Sbjct: 308 VQNVVQRGGRCLLPVFALGRAQELLLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTY 367
Query: 59 ISWTSQKVKE---TYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I ++++++ N F FK V N D GPCV+ A+PGML G S ++F+ W
Sbjct: 368 IGMMNERIQKLSLVRNPFAFKYVKNLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWC 427
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGYC+ GT+ +++S IE + G K+ + + ++FS H D
Sbjct: 428 SDSKNAVIIPGYCVDGTLAKEILSEPKEIEAMNGKKLRLNMSVEYISFSAHVDFTQNSQF 487
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
++ P+++ VHGE +M LK IQ
Sbjct: 488 IEECQPKYLFFVHGEMNEMQRLKNVIQ 514
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 11/224 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW++ +L VPIY+++GL ++ Y+
Sbjct: 224 VHSIIRRGGHVLLPQFALGRAQELLLILDEYWKKHPDLHNVPIYYASGLARKSMAVYQTY 283
Query: 59 ISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
I + ++ + D N F + + P PCV+ ATPG + G S E+F+ WAP
Sbjct: 284 IHTMNSNIRSRFAKRD--NPFVFKCKIAEGP-PCVVLATPGFMQTGSSRELFELWAPDSR 340
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N + + GY + GT+ +M+ + ++G I + + ++FS H D + ++ +
Sbjct: 341 NGLIVTGYSVEGTLARDIMTEPEEFQSVKGHMIQRKISVDYISFSAHVDYTQNAEFIETV 400
Query: 178 SPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
QHV+LVHGE+ M L+ + S +K + P N E++
Sbjct: 401 RAQHVVLVHGEQTAMGRLRAAMSSRYKERDEDVKIHTPRNLETL 444
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 11/206 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK L+P FALGRAQEL ++L++YW +R VPI F + L+ + + + + +
Sbjct: 354 GGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFVDMCGEA 413
Query: 66 VKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
V+ N F F+ V N R I GP V+ A PGML G S E+F+ WAP
Sbjct: 414 VRSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIFEAWAPD 473
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + L GY + GT+ ++L TI+L + RC ++FS H+D + + +
Sbjct: 474 AKNGVILTGYSVKGTLADELKREPETIQLPDRVLRRRCSFEMISFSAHSDYQQTQEFIGK 533
Query: 177 LSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHGE+ +M LKE+++ E
Sbjct: 534 LKVPNVVLVHGERGEMRRLKEKLEEE 559
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 11/206 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK L+P FALGRAQEL ++L++YW +R VPI F + L+ + + + + +
Sbjct: 354 GGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFVDMCGEA 413
Query: 66 VKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
V+ N F F+ V N R I GP V+ A PGML G S E+F+ WAP
Sbjct: 414 VRSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIFEAWAPD 473
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + L GY + GT+ ++L TI+L + RC ++FS H+D + + +
Sbjct: 474 AKNGVILTGYSVKGTLADELKREPETIQLPDRVLRRRCSFEMISFSAHSDYQQTQEFIGK 533
Query: 177 LSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHGE+ +M LKE+++ E
Sbjct: 534 LKVPNVVLVHGERGEMRRLKEKLEEE 559
>gi|429966185|gb|ELA48182.1| hypothetical protein VCUG_00420 [Vavraia culicis 'floridensis']
Length = 669
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 13/215 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
V+ V GGK L+P FALGRAQEL ++L+DYW+R +PIY+++ L + Y+
Sbjct: 239 VNDIVTRGGKCLLPVFALGRAQELLLILEDYWDRNPHLHNIPIYYASALANRCLSIYQAY 298
Query: 59 ISWTSQKVKETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ K+K+ +AF+FK++ N D LI CV+ A+PGML G S E+F+ W
Sbjct: 299 THMMNLKIKK--DAFNFKHIRNLKSVDNHLI--KNACVVMASPGMLQSGLSRELFESWCE 354
Query: 116 SEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
N +PGYC+ GT+ ++M+ + + G ++ + ++ ++FS H D +
Sbjct: 355 DANNGTVIPGYCVQGTLAKEIMTEPKEIVAMNGHRLRLNMRVEYISFSAHVDYVQNTSFI 414
Query: 175 KFLSPQHVILVHGEKPKMATLK---ERIQSELGIK 206
+ +P+ V+LVHGE +M LK E+ S L +K
Sbjct: 415 EKCTPRLVMLVHGEVNEMMRLKAALEKKHSVLALK 449
>gi|237839761|ref|XP_002369178.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
gi|211966842|gb|EEB02038.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
Length = 1100
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 11/206 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK L+P FALGRAQEL ++L++YW +R VPI F + L+ + + + + +
Sbjct: 354 GGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFVDMCGEA 413
Query: 66 VKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
V+ N F F+ V N R I GP V+ A PGML G S E+F+ WAP
Sbjct: 414 VRSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIFEAWAPD 473
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + L GY + GT+ ++L TI+L + RC ++FS H+D + + +
Sbjct: 474 AKNGVILTGYSVKGTLADELKREPETIQLPDRVLRRRCSFEMISFSAHSDYQQTQEFIGK 533
Query: 177 LSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHGE+ +M LKE+++ E
Sbjct: 534 LKVPNVVLVHGERGEMRRLKEKLEEE 559
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 130/259 (50%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RS+ D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSV-RSIERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI-----------EL 145
E+ + WAP+E N + + GY + GT+G ++ MSG + +
Sbjct: 370 RELLERWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMATGDDDE 429
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG ++ + VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCSVDEISFAAHVDGMENRAFIEEVGAPVVILVHGEKNQMMRLKSKLLSLNTD 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ IK Y PAN E + IP
Sbjct: 490 KTVKIKVYTPANCEEVRIP 508
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHSDFQKYPIYYASNLARKCMLVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTKI 150
S E+ + WAPSE N + + GY + GT+ ++M I+ +G K+
Sbjct: 368 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKV 427
Query: 151 DV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
+ RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 428 LIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNANKTA 487
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 KVKVYSPRNCEELRIP 503
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RS+ D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSV-RSIERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI-----------EL 145
E+ + WAP+E N + + GY + GT+G ++ MSG + +
Sbjct: 370 RELLERWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMATGDDDE 429
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG ++ + VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCSVDEISFAAHVDGMENRAFIEEVGAPVVILVHGEKNQMMRLKSKLLSLNTD 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y PAN E + IP
Sbjct: 490 KTVKVKVYTPANCEEVRIP 508
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 16/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
+H ++ GG+VLIPAFALGRAQEL ++LD+YW E N +P+Y+++ L + Y+
Sbjct: 239 IHSTISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHN--IPVYYASPLAKKCMTVYQ 296
Query: 57 MLISWTSQKVKETY---NAFDFKNVH--NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
I +++++ + N F FK++ N D GP V+ ATPG L G S ++F
Sbjct: 297 TYILSMNERIRNQFADSNPFKFKHISPLNSIEDFTDV-GPSVVMATPGGLQSGLSRQLFD 355
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGI 170
W + N +PG+ + GT+ +++ ++L G + Q+H ++FS H D
Sbjct: 356 MWCSDKKNACVIPGFLVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQT 415
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+K L P ++ILVHGE +M LK+++ +E K P N +S+
Sbjct: 416 STFLKELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSV 464
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 235 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELQKIPIYYASPLAKKCMAVYQTY 294
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + ID GP V+ A+PG L G S ++F
Sbjct: 295 INSMNERIRNQFAQSNPFHFKHIEPLNS--IDNFHDVGPSVVMASPGSLQSGLSRQLFDK 352
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +++ + L G + QI ++FS H D
Sbjct: 353 WCTDKKNTCVIPGYVIEGTLAKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFPQTS 412
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P ++ILVHGE +M LK+++ ++ IK P N +S+
Sbjct: 413 GFLDELRPPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSPKNCQSV 460
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 44/255 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R +PIY+++ L + + Y+ + ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHKDLQNIPIYYASNLARKCMLVYQTYVGAMNEN 309
Query: 66 VKETY--------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEV 109
+K + +DFK + + +SL D G CV+ A+PGM+ G S E+
Sbjct: 310 IKRLFRERMAESEAGGTNGGPWDFKYIRSL-KSLERFDDVGSCVMLASPGMMQNGVSREL 368
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL----------------EGTKIDV- 152
+ WAPS+ N + + GY + GT+ +M I+ +G K+ V
Sbjct: 369 LERWAPSDKNGVVITGYSVEGTMAKSIMQEPDQIQAIMSRNGANRRAGRGGEDGEKVMVP 428
Query: 153 -RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-------ELG 204
RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 429 RRCSVQEFSFAAHVDGVENREFIEKVAAPVVILVHGEQHNMMRLKSKLLSLNANLPESKK 488
Query: 205 IKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 489 VKVYSPRNCEEVRIP 503
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 22/239 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN---LRVPIYFSAGLTIQANMYYKM 57
+H + GG++L+P FALGRAQEL ++L++YW +N V IY+++ L + Y+
Sbjct: 245 IHSTILKGGRILMPVFALGRAQELLLILEEYWS-LNEDIQNVNIYYASNLARKCMAVYQT 303
Query: 58 LISWTSQKVK------ETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVF 110
S ++K++ E N F FK++ + I GPCV+ A+PGML G S ++
Sbjct: 304 YTSIMNEKIRLSASSSEKTNPFQFKHIKSIKSIDKIQDMGPCVVVASPGMLQSGVSRQLL 363
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGN---PTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ WAP N + L GY + GT+ +L++ P+I I R I +++F+ H D
Sbjct: 364 ERWAPDPKNAVILTGYSVEGTMAKELLAEPHTIPSITNPEVSIPRRLSIDEISFAAHVDF 423
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLK--------ERIQSELGIKCYDPANNESMCI 218
+ ++ + P+ +ILVHG+ M LK R +E +K ++P N E + I
Sbjct: 424 QQNAGFIEEVGPKKIILVHGDSNPMGRLKSALLSRYSSRKGTEEEVKVFNPRNCEELLI 482
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 252 GGRALLPVFALGRAQELLLILDEYWGKHPEFQKYPIYYASNLARKCMVVYQTYVGAMNDN 311
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 312 IKRLFRERMAEAEASGDGAGQGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQSGV 369
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGN-------PTIELEGT 148
S E+F+ WAPSE N + + GY + GT+ ++ MS N P E E
Sbjct: 370 SRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIPAVMSRNLAAGRRAPGGESERV 429
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 430 LIPRRCSVAEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTT 489
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 490 KVKVYSPRNCEELRIP 505
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW++ ++PIY+++ L + + Y+ + ++
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWDKHPEFQKIPIYYASNLARKCMLVYQTYVGSMNEN 308
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 309 IKRLFRERMAEAEANSTSGGRGGPWDFKYIRSLKNLDR--FDDVGGCVILASPGMLQNGI 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGT 148
S ++ + WAPS+ N + + GY + GT+ ++M I E E
Sbjct: 367 SRQLLERWAPSDKNGVIITGYSVEGTMAKQIMQEPDHIQAIMSGPQGFTRRSVPGETEKA 426
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 427 MIPRRCSVQEFSFAAHVDGVENREFIEEIAAPVVILVHGEQHNMMRLKSKLLSLNADKTT 486
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 487 KVKVFSPKNCEPLRIP 502
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 46/257 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE ++PIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETY-------------NA----FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + NA +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKNASAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQSGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-------------------GNPTIELEG 147
E+ + WAP+E N + + GY + GT+ +L++ G + E +
Sbjct: 370 RELLERWAPNERNGVIMTGYSVEGTMAKQLLNEPEQIPAVMSRAATGLIRRGANSDEEQK 429
Query: 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI-----QSE 202
I RC + +++F+ H DG + ++ +S VILVHGEK +M LK ++ +
Sbjct: 430 VMIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKT 489
Query: 203 LGIKCYDPANNESMCIP 219
+ +K Y PAN + + IP
Sbjct: 490 VKVKVYTPANCDEVRIP 506
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R ++PIY+ + + + Y+ I ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RS+ D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSV-RSIERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGNPTI-----------EL 145
E+ + WAP+E N + + GY + GT+G ++ MSG + +
Sbjct: 370 RELLERWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMATGDDDE 429
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG ++ + VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCSVDEISFAAHVDGMENRAFIEEVGAPVVILVHGEKNQMMRLKSKLLSLNTD 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y PAN E + IP
Sbjct: 490 KTVKVKVYTPANCEEVRIP 508
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 276 GGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDN 335
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 336 IKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 393
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTKI 150
S E+ + WAPSE N + + GY + GT+ ++M I+ +G K+
Sbjct: 394 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKV 453
Query: 151 DV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
+ RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 454 LIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNANKTA 513
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 514 KVKVYSPRNCEELRIP 529
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 129/260 (49%), Gaps = 51/260 (19%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++L++YWE ++PIY+ + + Y+ I +
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 309
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DFK V + RSL D G CV+ A+PGML G S
Sbjct: 310 IKRLFRQRMAEAEASGDKSVSAGPWDFKYVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 368
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------------------MSGNPTIE 144
E+ + WAP+E N + + GY + GT+ +L M+GN E
Sbjct: 369 RELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPDQIHAVMSRAATGMGRTRMNGND--E 426
Query: 145 LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI----- 199
+ I RC + +++F+ H DG + ++ +S VILVHGEK +M LK ++
Sbjct: 427 EQKIMIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNA 486
Query: 200 QSELGIKCYDPANNESMCIP 219
+ + +K Y PAN E + IP
Sbjct: 487 EKTVKVKVYTPANCEEVRIP 506
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 12/226 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
+H ++ GG+VLIPA+ALGRAQEL ++LD+YW E N +PIY+++ L + Y+
Sbjct: 234 IHSTISQGGRVLIPAYALGRAQELLLILDEYWANHPELHN--IPIYYASPLAKKCLTVYE 291
Query: 57 MLISWTSQKVKET-YNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+ +V+ N F FK++ + GP V+ A+PG L G S ++F W
Sbjct: 292 TYTLSMNDRVQNAKSNPFSFKHISALSSIEVFKDVGPSVVMASPGGLQSGLSRQLFDKWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N LPG+ + GT+ +M+ + L G + Q+H ++FS H D
Sbjct: 352 SDKKNTCVLPGFVVEGTLAKTIMTEPKEVTLMNGLSAPLNMQVHYISFSAHADSAQTSAF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
++ L+P ++ILVHGE +M LK+++ S+ K P N +S+
Sbjct: 412 LEELNPPNIILVHGEANQMGRLKQKLTSQFADRNTKILTPKNCQSV 457
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 25/240 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE---RMNLRVPIYFSAGLTIQANMYYKM 57
V + GG+VL+P FALGRAQEL ++LD+YW +N ++PIY+ + L + Y+
Sbjct: 251 VQSILKRGGRVLMPVFALGRAQELLLILDEYWANHPELN-QIPIYYISNLAAKCMKVYQT 309
Query: 58 LISWTSQKVKETYN------AFDFKNVHNFDRSLI---------DAPGPCVLFATPGMLT 102
I + ++K +N F + F + + D GPCV+ A+PG +
Sbjct: 310 FIHGMNDQIKRKFNQGINPWTFYREGKGVFKKGYVTNLKAIDKFDDRGPCVVMASPGFMQ 369
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAF 161
G S E+ + WAP N + + GY + GT+ +++ N I ++G KI R +H ++F
Sbjct: 370 SGVSRELLERWAPDRRNALLVTGYSIEGTMAREMLKEPNEIIGMKGNKIPRRLDVHYISF 429
Query: 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYD-----PANNESM 216
S H D + + P H++LVHGE M LK ++ + +K D P N E++
Sbjct: 430 SAHVDYTQNAAFIDQIMPTHLVLVHGELNNMTRLKNALKDKYTLKKSDIQIHTPRNVETL 489
>gi|430813249|emb|CCJ29377.1| unnamed protein product [Pneumocystis jirovecii]
Length = 574
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VLIP FALGR QEL +++D+YW +P+Y++ L + Y+
Sbjct: 118 IHSIIRRGGRVLIPVFALGRTQELMLIIDEYWHNHPELHSIPVYYACSLAKKCMTVYQT- 176
Query: 59 ISWTSQKVKETYNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K+ E N F F+ ++ + DR + GPCV+ A+PGML G S + + W P
Sbjct: 177 ------KIFEERNPFIFRYISSLKSLDR--FEDIGPCVMLASPGMLQSGVSRALLEKWCP 228
Query: 116 SEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
N + + GYC+ GT+ +++ + I L G KI R + +++F H D +
Sbjct: 229 DPKNGLIVAGYCVEGTMAKHILNEPSEIISLSGQKIPRRMTVEEISFEAHVDYIQNSQFI 288
Query: 175 KFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESM 216
++ H+ILVHGE+ M LK + S+ + Y+P N E++
Sbjct: 289 DLINANHIILVHGEQNNMGRLKSALLSKYSHRKNEVHIYNPKNCETL 335
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 281 GGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDN 340
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 341 IKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 398
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTKI 150
S E+ + WAPSE N + + GY + GT+ ++M I+ +G K+
Sbjct: 399 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKV 458
Query: 151 DV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
+ RC + + +F+ H DG + ++ + VILVHGE+ M LK ++ S
Sbjct: 459 LIPRRCSVQEYSFAAHVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLSLNANKTA 518
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 519 KVKVYSPRNCEELRIP 534
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW + ++PIY+++ L + Y+
Sbjct: 242 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTY 301
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + + ID GP V+ A+P L G S ++F
Sbjct: 302 INSMNERIRNQFAQSNPFHFKHIESLNS--IDNFHDVGPSVVMASPSGLQSGLSRQLFDK 359
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + GT+ +++ + L G + +H ++FS H D
Sbjct: 360 WCTDKRNACVIPGYVVEGTLAKTIINEPREVALANGLTAPLHMSVHYISFSAHADFPQTS 419
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ + L P ++ILVHGE +M+ LK+++ ++ K P N +S+
Sbjct: 420 NFLDELRPPNIILVHGEANEMSRLKQKLITQFDGTNTKIVSPKNCQSV 467
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTKI 150
S E+ + WAPSE N + + GY + GT+ ++M I+ +G K+
Sbjct: 368 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKV 427
Query: 151 DV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
+ RC + + +F+ H DG + ++ + VILVHGE+ M LK ++ S
Sbjct: 428 LIPRRCSVQEYSFAAHVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLSLNANKTA 487
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 KVKVYSPRNCEELRIP 503
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 14/236 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+ + V+ GG+VLIPAFALGRAQEL ++LD+YWE +PIY+++ L + Y+
Sbjct: 237 IAQTVSHGGRVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTY 296
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K+K Y N F+FK++ + GP ++ A+P L G S ++F W
Sbjct: 297 INSMNDKIKSQYENSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWC 356
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N +PGY + GT+ +++ + L G + + ++ ++FS H D
Sbjct: 357 QDRKNACVIPGYVVEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAF 416
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESMCIPSTHYVKA 226
+ L P H++LVHGE+ +M LK ++Q++ +K P N C P + K
Sbjct: 417 LGELRPPHIVLVHGEQNEMGRLKVKLQAQFAEQNVKINSPKN----CQPVEFFFKG 468
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTKI 150
S E+ + WAPSE N + + GY + GT+ ++M I+ +G K+
Sbjct: 368 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKV 427
Query: 151 DV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
+ RC + + +F+ H DG + ++ + VILVHGE+ M LK ++ S
Sbjct: 428 LIPRRCSVQEYSFAAHVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLSLNANKTA 487
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 KVKVYSPRNCEELRIP 503
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 12/226 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQA-NMYY 55
+H ++ GG+VLIPAFALGRAQEL ++LD+YW E N +PIY+++ L + +Y
Sbjct: 235 IHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELQN--IPIYYASPLAKKCLTVYE 292
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+S + N F FK+V + GP V+ A+PG L G S ++F W
Sbjct: 293 TYTLSMNDRIQNAKSNPFSFKHVSALSSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWC 352
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N LPGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 353 SDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTSAF 412
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
++ L+P ++ILVHGE +M LK+++ S+ K P N +S+
Sbjct: 413 LEELNPPNIILVHGEANEMGRLKQKLISQFADRNTKILTPKNCQSV 458
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW + VPIY+++ L + Y+
Sbjct: 224 VHSIIRRGGHVLLPTFALGRAQELLLILDEYWAKHPDLHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + V+ + N F FK++ N ++R + + P PCV+ A+PG + G S E
Sbjct: 284 IHTMNSNVRTRFAKRDNPFVFKHITNVPGTRGWERKIAEGP-PCVVLASPGFMNSGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMS-GNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WA N + GY + GT+ +++ + + ++G I + + ++FS H D
Sbjct: 343 LLELWASDSKNGCIVTGYSVEGTMARDILNEPSEIVGMKGNTIQRKLSVDYISFSAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESM 216
+ ++ + PQH++LVHGE M LK +Q IK + P N E++
Sbjct: 403 SQNSEFMELVKPQHIVLVHGEATGMGRLKAAMQDRYKSRDEEIKIHTPRNLETL 456
>gi|255084461|ref|XP_002508805.1| predicted protein [Micromonas sp. RCC299]
gi|226524082|gb|ACO70063.1| predicted protein [Micromonas sp. RCC299]
Length = 728
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 12/230 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH+ + GGKVL+P ALGRAQE+ ++L+DYW + L+ VPIY ++ L +A Y+
Sbjct: 242 VHRVLTRGGKVLLPVVALGRAQEVLLILEDYWVKHPELKGVPIYQASALAKRAMTVYQTY 301
Query: 59 ISWTSQKVKETY---NAFDFKNV-HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +K + N F F +V H + S +D GPCV+ ATP ML G S ++F+ W
Sbjct: 302 INVLNSDMKAAFEESNPFVFNHVNHLANSSGLDDVGPCVVLATPSMLQSGLSRDLFESWC 361
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + + + GT+ +++S T+ G ++ +R + ++FS H D
Sbjct: 362 GDSKNGVIICDFAVQGTLAREILSDCKTVTSRTGQELPLRMTVDAISFSAHADYPQTQQF 421
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
+ L+P HV+LVHGE +M LK ++ + + Y+P N +++ I
Sbjct: 422 LDALAPPHVVLVHGEAGEMGKLKRALEGKAAADGKKMMVYNPKNCQAVEI 471
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 11/206 (5%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLIS-- 60
V GGK L+P FALGRAQE+ ++L++YW+ R RVPI++ + L+ +A Y+ I
Sbjct: 236 VDNGGKCLLPVFALGRAQEILLILEEYWKANRRLHRVPIFYISPLSSKALKVYETFIGVC 295
Query: 61 --WTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++V++ N + F ++ + RS + PCV+ +PGML GG S +VF+
Sbjct: 296 GEHIKRRVQQGENPYHFTHIKYAPTVDSVRSHLLRDAPCVIMTSPGMLQGGPSRDVFEII 355
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
AP N + L GY + GT+ ++L I+LE I RC I Q++FS H D D
Sbjct: 356 APDNRNGVILTGYTVKGTLADELKKEPDVIKLEDNIIKRRCFIEQISFSAHADYNQTRDF 415
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI 199
+ L +V+LVHGE+ +M L +++
Sbjct: 416 IDNLQVPNVLLVHGERKEMKRLHDKL 441
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 18/228 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
VH + GG VL+PAFALGRAQEL ++LD+YW++ +L VPIY+++ L + Y+
Sbjct: 224 VHSVIRRGGHVLLPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I + ++ + N F FK + + + P PCV+ A+PG + G S E+F+ WA
Sbjct: 284 IHTMNNNIRSRFAKRDNPFVFKC-----KKIAEGP-PCVVLASPGFMQVGPSRELFELWA 337
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
P N + + GY + GT+ +M+ L+G I + + ++FS H D +
Sbjct: 338 PDARNGLIITGYSIEGTLARDIMTEPEEFTSLKGATIPRKISVDYVSFSAHVDYSQNSEF 397
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESM 216
++ + QHV+LVHGE+ M L+ + S +K + P N E++
Sbjct: 398 IELVKAQHVVLVHGEQTAMGRLRGAMTSRFKERDEDVKIHTPRNLETL 445
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FA+GRAQEL ++LD+YW + VPIY+++ L + Y+
Sbjct: 224 VHSIIKRGGHVLMPTFAIGRAQELLLILDEYWSKHPELHNVPIYYASSLARKCMAVYQTY 283
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ + ++R L + P PCV+ A+PGML G S E
Sbjct: 284 IHTMNSNIRSRFAKRDNPFVFKHISHAPQNRGWERKLAEGP-PCVILASPGMLQSGPSRE 342
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE--LEGTKIDVRCQIHQLAFSPHTD 166
+ + AP N + L GY + GT +++ I+ G I + + ++FS H D
Sbjct: 343 LLELLAPDSRNGLVLTGYSVEGTPARDIINEPDEIQSYRTGAPIPRKLSVDYISFSAHVD 402
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESM 216
G + ++ + QHVILVHGE+ M L +Q++ +K + P N+E++
Sbjct: 403 GAQNQEFIEKVGAQHVILVHGEQTAMGRLSAALQAKYKARDEEVKIHMPRNSETL 457
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 14/236 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+ + V+ GG+VLIPAFALGRAQEL ++LD+YWE +PIY+++ L + Y+
Sbjct: 230 IAQTVSHGGRVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTY 289
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + K+K Y N F+FK++ + GP ++ A+P L G S ++F W
Sbjct: 290 INSMNDKIKSQYENSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWC 349
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N +PGY + GT+ +++ + L G + + ++ ++FS H D
Sbjct: 350 QDRKNACVIPGYVVEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAF 409
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESMCIPSTHYVKA 226
+ L P H++LVHGE+ +M LK ++Q++ +K P N C P + K
Sbjct: 410 LGELRPPHIVLVHGEQNEMGRLKVKLQAQFAEQNVKINSPKN----CQPVEFFFKG 461
>gi|50287519|ref|XP_446189.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637743|sp|Q6FUA5.1|YSH1_CANGA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49525496|emb|CAG59113.1| unnamed protein product [Candida glabrata]
Length = 771
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 120/217 (55%), Gaps = 18/217 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V GG+VL+P FALGRAQEL ++LD+YW E + ++PI++++ L + +
Sbjct: 230 IHSTVNKGGRVLMPVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVF 289
Query: 56 KMLISWTSQKVKETY-----NAFDFKNV---HNFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+ ++ + +++ + N F FKN+ N D GP V+ A+PGML G S
Sbjct: 290 QTYVNMMNDNIRKKFRDSQTNPFIFKNIAYIKNLDE--FQDFGPSVMLASPGMLQNGLSR 347
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPH 164
++ + W P E NL+ + GY + GT+ L+ P++ I RC++ +L+F+ H
Sbjct: 348 DLLERWCPDEKNLVLITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEELSFAAH 407
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS 201
D + ++ ++ ++ ++ILVHGE M LK + S
Sbjct: 408 VDFQENLEFIEQINASNIILVHGEPNPMGRLKSALLS 444
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE ++PIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DFK V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSASAGPWDFKFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE--------------LEGTK--- 149
E+ + WAP+E N + + GY + GT+ +L++ I L GT
Sbjct: 370 RELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRSAGGVSRRGLAGTDEEQ 429
Query: 150 ---IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 KIMIPRRCTVDEISFAAHVDGVENRNFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADK 489
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN + + IP
Sbjct: 490 AVKVKVYTPANCDEVRIP 507
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 12/224 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNL-RVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P ALGRAQEL ++L+D+W + +L RVPIY ++ L +A Y+
Sbjct: 227 VQTILRRGGRVLLPVVALGRAQELLLILEDFWAQNPDLQRVPIYQASALARKAMTIYQTY 286
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNFDRSL-IDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +K E N F F +V + +S +D GPCV+ ATP ML G S E+F+ W
Sbjct: 287 INVLNSDMKAAFEEANPFVFNHVKHVSKSSELDDVGPCVVLATPSMLQSGLSRELFESWC 346
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + + + GT+ +++S N I +G ++ + + ++FS H D
Sbjct: 347 EDPKNGVIIADFAVQGTLAREILSDVNKIIARDGRELQLNMSVDAISFSAHADYPQTQAF 406
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPAN 212
+ L+P HVILVHGE +M LK + ++ + Y P N
Sbjct: 407 LDALAPPHVILVHGEAGEMGRLKRALDNKAAADDKKMSVYTPKN 450
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 252 GGRALLPVFALGRAQELLLILDEYWGKHPEFQKYPIYYASNLARKCMVVYQTYVGAMNDN 311
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 312 IKRLFRERMAEAEASGDGAGQGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQSGV 369
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGN-------PTIELEGT 148
S E+F+ WAP+E N + + GY + GT+ ++ MS N P E E
Sbjct: 370 SRELFERWAPNEKNGVIITGYSVEGTMARQIMQEPDQIPAVMSRNLAAGRRAPGGESERV 429
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 430 LIPRRCSVAEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTT 489
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 490 KVKVYSPRNCEELRIP 505
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 124/257 (48%), Gaps = 47/257 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW ++PIY+++ L + + Y+ + ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWALHPEFQKIPIYYASNLARKCMLVYQTYVGAMNEN 310
Query: 66 VKETYNA-----------------FDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 311 IKRLFRERMAEAEASSDTAAKGGPWDFKYIRSLKNLDR--FDDVGRCVMLASPGMLQNGV 368
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS------------------GNPTIELEG 147
S E+ + WAPSE N + + GY + GT+ ++M G E E
Sbjct: 369 SRELLERWAPSEKNGVVITGYSVEGTMAKQIMQEPDQIQAIMSRNTGGARRGPDLSESEK 428
Query: 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----E 202
I RC + + +F+ H DG + ++ ++ VILVHGE M LK ++ S
Sbjct: 429 VMIPRRCSVQEFSFAAHVDGIENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNADKT 488
Query: 203 LGIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 489 NKVKVFSPRNCEELRIP 505
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 133/244 (54%), Gaps = 24/244 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-----ERMNLRVPIYFSAGLTIQANMYY 55
+H V+ GG+VL+P FALGRAQEL ++LD++W E +VPI++++ L + +
Sbjct: 228 IHTTVSQGGRVLMPVFALGRAQELMLILDEFWSQHADELGGGQVPIFYASDLARKCMSVF 287
Query: 56 KMLISWTSQKVKETY-----NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLE 108
+ ++ + +++ + N F FKN+ ++ ++L + GP V+ A+PGML G S +
Sbjct: 288 QTYVNMMNDDIRKKFRDSQTNPFIFKNI-SYLKNLEEFQDFGPSVMLASPGMLQSGISRD 346
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHT 165
+ + W P + NL+ + GY + GT+ +M P++ I RCQ+ +++F+ H
Sbjct: 347 LLERWCPDDKNLVLITGYSVEGTMAKFIMLEPDTIPSVNNPEITIPRRCQVEEISFAAHV 406
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMC 217
D + ++ ++ ++ ++ILVHGE M LK + S + ++P N+ +
Sbjct: 407 DFQENLEFIEKINANNIILVHGESNPMGRLKSALLSNFASLKGTENEVHVFNPRNSVEVS 466
Query: 218 IPST 221
+ T
Sbjct: 467 VEYT 470
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 9/221 (4%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK LIP F+LGRAQE ++L++YW+ I+F + + + Y++ S+ +Q+
Sbjct: 240 GGKCLIPVFSLGRAQEFELILEEYWQSHKELWAYSIFFFSSIAKKCMTYFEKYTSFMNQE 299
Query: 66 V-KETYNAFDFKNVHNFDRSLIDAP---GPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
+ K AF+FK + + S+ D+ PCV+ A+PGML GFS +F+ W + N +
Sbjct: 300 LRKRKRQAFNFKFIRDGSSSVDDSTIDNHPCVVLASPGMLQDGFSRTLFERWCTDKNNGV 359
Query: 122 TLPGYCLAGTIGNKLM--SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+PGYC+ GT+ +++ S P G I +C + +++F H+D + + + P
Sbjct: 360 IIPGYCVEGTLAKQIINDSSKPFTSTTGEVITPKCSVVEISFCAHSDHVHTTNFIGAVKP 419
Query: 180 QHVILVHGEKPKMATLKERIQSEL-GIKCYDPANNESMCIP 219
+H++L+HGE+ M L ++ + Y P ++++ IP
Sbjct: 420 KHLVLIHGERKSMEQLYNSLKKTYPDLNIYMPEVSQAIQIP 460
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 313 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTY 372
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + ID GP V+ A+PG L G S ++F
Sbjct: 373 INSMNERIRNQFAQSNPFHFKHIEPLNS--IDNFHDVGPSVVMASPGTLQSGLSRQLFDK 430
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PG+ + GT+ +++ + L G + QI ++FS H D
Sbjct: 431 WCTDKKNTCVIPGFVIEGTLSKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFPQTS 490
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P ++ILVHGE +M LK+++ ++ IK P N +S+
Sbjct: 491 AFLDELRPPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSPKNCQSV 538
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 42/253 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+ L+P FALGRAQEL ++LD+YW + ++PIY+++ + + + Y+ + +
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWAKHPEFQKIPIYYASNIARKCMVVYQTYVYAMNDN 309
Query: 66 VKETY----------------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSL 107
+K + +DFK V + +SL D G CV+ A+PGM+ G S
Sbjct: 310 IKRLFRERMEEAERNGDASKAGPWDFKYVRSL-KSLERFDDVGSCVMLASPGMMQNGVSR 368
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM----------------SGNPTIELEGTKID 151
E+ + WAP + N + + GY + GT+G ++ P E E +
Sbjct: 369 ELLERWAPDQRNGVIMTGYSVEGTMGKMILHEPEQIPAVMTRANVARRGPNREGEQVLLP 428
Query: 152 VRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIK 206
RC + + +F+ H DG + ++ +S VILVHGEK M LK ++ S + +K
Sbjct: 429 RRCSVQEFSFAAHVDGTENREFIEEVSAPVVILVHGEKHNMMRLKSKLLSLNADKKQPVK 488
Query: 207 CYDPANNESMCIP 219
+ PAN E + IP
Sbjct: 489 VFSPANCEELRIP 501
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH + GG VL+P FALGRAQEL ++LD+YW++ VP+Y+++ L + Y+
Sbjct: 225 VHNIIRRGGHVLLPTFALGRAQELLLILDEYWKKHPDLHNVPVYYASSLARKCMAVYQTY 284
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + V+ + N F FK++ N ++R + + P CV+ A+PG + G S E
Sbjct: 285 IHTMNSNVRSRFAKRDNPFVFKHISNVPHSRGWERKIAEGPS-CVVLASPGFMESGPSRE 343
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDG 167
+ + WAP N + L GY + GT+ + + I ++G I + I +++F H D
Sbjct: 344 LLELWAPDSRNGVILTGYSIEGTMARDIQTEPDEIPSVKGHTIPRKLSIDEISFGAHVDY 403
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANNESMCI 218
+ ++ + QH++LVHGE+ M L+ +Q + +K + P N E + +
Sbjct: 404 SQNSEFIELIHAQHIVLVHGEQNAMGRLRAALQDRYKNRDEDVKIHTPRNLEPLQL 459
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + ++PIY+++ L + + Y+ + ++
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWGKHPEFQKIPIYYASNLARKCMLVYQTYVGSMNEN 308
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 309 IKRLFRERMAEAEANSTSGGRGGPWDFKYIRSLKNLDR--FDDVGGCVILASPGMLQNGI 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-----------------ELEGT 148
S ++ + WAPS+ N + + GY + GT+ ++M I E E
Sbjct: 367 SRQLLERWAPSDKNGVIITGYSVEGTMAKQIMQEPDHIQAIMSGPQGFTRRSAPGETEKA 426
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 427 MIPRRCSVQEYSFAAHVDGVENREFIEEIAAPVVILVHGEQHNMMRLKSKLLSLNADKTT 486
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 487 KVKVFSPKNCEPLRIP 502
>gi|209876680|ref|XP_002139782.1| cleavage and polyadenylation specificity factor subunit 3
[Cryptosporidium muris RN66]
gi|209555388|gb|EEA05433.1| cleavage and polyadenylation specificity factor subunit 3, putative
[Cryptosporidium muris RN66]
Length = 767
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 154/317 (48%), Gaps = 35/317 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
V ++ GK L+P FA+GRAQEL ++LD++W + + +PIY+++ ++++ ++
Sbjct: 252 VQSILSRQGKCLLPVFAIGRAQELLLILDEHWAQTSCLHNIPIYYASPMSVKCMRVFETY 311
Query: 59 ISWTSQKVKET----YNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ V++ N F+F+ V + + I + GPCV+ A PGML G S ++
Sbjct: 312 INQCGDAVRKQADMGINPFNFQFVKTVNSISEIKDAIYSEGPCVIMAAPGMLQNGTSRDI 371
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKG 169
F+ WAP + N + L GY + GT +L I+L + ++ + Q++FS H+D
Sbjct: 372 FEVWAPDKRNGVILTGYAIRGTPAYELRREPDIIQLGDKLVPLKAKFDQISFSAHSDFAQ 431
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKER---IQSELGIKCYDPANNESMCIPSTHYVKA 226
+ + L +VILVHGE+ + L+++ ++ L + + S+ P + A
Sbjct: 432 TQEFISNLKVPNVILVHGERGECKRLRDKLTELRPSLAVFAPEILQKVSLTFPIQLNITA 491
Query: 227 GAS--DAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEK 284
S D R LK S E S+ K + + + +++ E
Sbjct: 492 VGSIADTIKRE--------LKQNSIEDSIKTHKTAD-----------IEDALVIARPFES 532
Query: 285 AKVVHQDELLLMLGEKR 301
++H +EL +LG KR
Sbjct: 533 TLIIHPNELFQVLGTKR 549
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 129/274 (47%), Gaps = 59/274 (21%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIPAFALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 170 VHDIVGRGGRCLIPAFALGRAQELMLILDEYWANHPELHDIPIYYASQLARKCMAVYQTY 229
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFD--RSL---------------------------- 85
I ++K++ N F F+++ N RS
Sbjct: 230 IHAMNEKIRNQLANNNPFCFRHISNLKAMRSYSISEQTEHALASKAWLYVAYSRFPVIGT 289
Query: 86 -------------IDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTI 132
D GPCV+ A+PGM+ G S E+F++W N + + GYC+ GT+
Sbjct: 290 VAAGTNVPTSIEHFDDSGPCVVMASPGMMQSGMSRELFENWCTDRRNGVIIAGYCVEGTL 349
Query: 133 GNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPK 191
+++S I + G + ++C + ++FS HTD + ++ L P +VILVHGE+ +
Sbjct: 350 AKQILSLPAEIPTMSGQTLPLKCSVDYISFSAHTDYQQTSAFIRELKPNYVILVHGEQNE 409
Query: 192 MATLKERIQSELG------IKCYDPANNESMCIP 219
M L +Q E ++ + P N C+P
Sbjct: 410 MLRLAGALQREYEDDDTCCLELFTPKN----CVP 439
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 25/272 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALG AQEL ++LD+YWE+ V +Y+ + L + Y+
Sbjct: 242 IHATLTKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYETY 301
Query: 59 ISWTSQKVK-------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ K++ + FDFK + + + S GP V+ ATPGML G S ++
Sbjct: 302 TGIMNDKIRLSSSSDDSKSSPFDFKYIKSIRNLSKFSDLGPSVVVATPGMLQAGVSRQLL 361
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDV--RCQIHQLAFSPHTDG 167
+ WAP + NL+ L GY + GT+ L+ I+ L + + R I +++F+ H D
Sbjct: 362 EKWAPEQKNLVILTGYSVEGTMAKDLLKEPQVIQSLNNPDLSIPRRIGIEEISFAAHVDF 421
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCIP 219
+ + + +SP +ILVHG+ M LK + S+ +K ++P N E + IP
Sbjct: 422 QQNSEFIDKVSPSKIILVHGDSVPMGRLKSALLSKYSSRKGTDKEVKVFNPRNCEELTIP 481
Query: 220 STHYVKAGASDAFIRSCMNPNFQYLKSGSEEK 251
K + S Q LK EEK
Sbjct: 482 ----FKGLKIAKVLGSLAEEQLQTLKHEIEEK 509
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 118/205 (57%), Gaps = 9/205 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
+ + ++ GG+ LIP FALGRAQEL ++LD+YW+ +L+ +PI++++ L +A Y+
Sbjct: 222 IERVISRGGRCLIPVFALGRAQELLLILDEYWQANPHLQNIPIWYASKLASRALRVYQTY 281
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+ + +++ + N F F+ + N D + D GP V+FA+PGML G S ++F
Sbjct: 282 ANMMNARIRSQMDVSNPFRFRFIQNLKSIDVNSFDDSGPSVVFASPGMLQSGVSRQLFDR 341
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
WA N + + GY + T+ ++M+ + LEG + + + ++FS H D
Sbjct: 342 WASDHKNGVLIAGYAVEHTLAKEIMAQPKEVVTLEGRRQPLNALVDYVSFSAHVDFVQNR 401
Query: 172 DLVKFLSPQHVILVHGEKPKMATLK 196
+ ++P+H+ILVHG+K +M LK
Sbjct: 402 SFINQVAPKHIILVHGQKDEMGRLK 426
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 47/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE ++PIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DFK V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSASAGPWDFKFVRSL-RSLERFDDLGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE--------------LEGTK--- 149
E+ + WAP+E N + + GY + GT+ +L++ I L GT
Sbjct: 370 RELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRSAGGVSRRGLAGTDEEQ 429
Query: 150 ---IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + +++F+ H DG + ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 KIMIPRRCTVDEISFAAHVDGVENRNFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADK 489
Query: 202 ELGIKCYDPANNESMCIP 219
+ +K Y PAN + + IP
Sbjct: 490 TVKVKVYTPANCDEVRIP 507
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 128/237 (54%), Gaps = 19/237 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALGRAQEL ++LD+YW + +L + +Y+++ L + Y+
Sbjct: 178 IHSTLANGGRVLMPVFALGRAQELLLILDEYWSQHQDLENIKVYYASDLARKCLAVYQTY 237
Query: 59 ISWTSQKVKETY-----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
I+ ++ +++ + N F F+ + N + S D P V+ A+PGML G S + +
Sbjct: 238 INMMNENIRKKFRDTNKNPFQFQYIKNIKNLSKFDDFQPSVVVASPGMLQNGVSRALLEK 297
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKG 169
WAP N + + GY + GT+ +++ + P+ + I R + +++F+ H D +
Sbjct: 298 WAPDPRNTLIMTGYSVEGTMAKEILLEPTEIPSQQNPDVLIPRRMTVEEISFAAHVDYEQ 357
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCI 218
++ ++P+ ++LVHGE M LK + S+ +K Y+P N E + +
Sbjct: 358 NSKFIELVNPKTIVLVHGESNPMGRLKSALLSKYSKYKNTPDEVKVYNPRNCEDLLV 414
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK ++ + DR D G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDAAGKGGPWDFKFIRSLKSIDR--FDDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLM--------------SGN---PTIELEGT 148
S E+ + WAPSE N + + GY + GT+ +LM +G P + E
Sbjct: 368 SRELLERWAPSEKNGVIITGYSVEGTMAKQLMQEPDQIQAVMTRSSAGGRRAPGGDAEKV 427
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ + VILVHGE M LK ++ S
Sbjct: 428 MIPRRCTVQEFSFAAHVDGTENREFIEEVGAPVVILVHGEVHNMMRLKSKLLSLNANKTE 487
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 KVKVYSPRNCEELRIP 503
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 23/237 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM-NLR-VPIYFSAGLTIQANMYYKML 58
+H + GGK L+P FALGRAQE+ ++LD+YWE +L+ IY+++ L + Y+
Sbjct: 252 IHSTLDKGGKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTY 311
Query: 59 ISWTSQKVKETY-----NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
I+ + ++ + N F FK N+ N DR D GPCV+ A+PGML G S +
Sbjct: 312 INMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDR--FDDMGPCVMVASPGMLQSGVSRSLL 369
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGN---PTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ WAP N + L GY + GT+ ++++ P+ + K+ R + +L+F+ H D
Sbjct: 370 ERWAPDPKNTLILTGYSVEGTMAKQIINEPNEIPSAQNPDLKVPRRLAVEELSFAAHVDF 429
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-GIK-------CYDPANNESM 216
+ + + + +++ILVHGE M LK + ++ G+K Y+P N E +
Sbjct: 430 QQNSEFIDLVDSKNIILVHGELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEV 486
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 114/203 (56%), Gaps = 7/203 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
V V GGK L+P FALGRAQEL ++LD++W+ R +L+ +PI +++ L + Y+
Sbjct: 224 VSDVVKRGGKCLLPVFALGRAQELLLILDEFWDSRKDLQGIPILYASALAKRFMAVYQTY 283
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + +++ E N F FK+V + + GPCV+ A+PGML G S ++F+ W
Sbjct: 284 LNMMNDRIQGMAEISNPFHFKHVQSIKNIEAYEDRGPCVMMASPGMLQNGLSRDLFEMWC 343
Query: 115 PSEMNLITLPGYCLAGTIGNKLM-SGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N +PGYC+ GT+ L+ + L+G K+ VR I ++FS H D +
Sbjct: 344 GDKRNGCIIPGYCVEGTLAKDLLCEPDEITSLKGNKLVVRSSIDYISFSAHVDFLQNAEF 403
Query: 174 VKFLSPQHVILVHGEKPKMATLK 196
++ V+LVHGE +M LK
Sbjct: 404 IEGCKVSEVVLVHGESSEMNRLK 426
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHSEFQKFPIYYASNLARKCMVVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGSGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+ + WAP++ N + + GY + GT+ ++M P E E
Sbjct: 368 SRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTTAGARRGPGGESEKV 427
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 428 LIPRRCSVAEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNAGKTQ 487
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 488 KVKVFSPKNCEELRIP 503
>gi|401404496|ref|XP_003881737.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
gi|325116150|emb|CBZ51704.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
Length = 1033
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 11/211 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGK L+P FALGRAQEL ++L++YW VPI F + L+ + + + +
Sbjct: 351 GGKCLLPVFALGRAQELLLILEEYWTAHPEVCHVPILFLSPLSSKCMVVFDAFVDMCGDA 410
Query: 66 VKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
V+ N F F+ V N R I GP V+ A PGML G S E+F+ AP
Sbjct: 411 VRNRALRGENPFAFRFVKNLKSVESARVYIHHDGPAVIMAAPGMLQSGASREIFEALAPE 470
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + L GY + GT+ ++L TI+L + RC ++FS H+D + D +
Sbjct: 471 SKNGVILTGYSVKGTLADELKREPETIQLPDRVLRRRCSFEMISFSAHSDYQQTQDFIGK 530
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKC 207
L +V+LVHGE+ +M LKE+++ E C
Sbjct: 531 LKVPNVVLVHGERGEMRRLKEKLEEERPALC 561
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 49/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ +
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWSKHSDFQNYPIYYASNLAKKCMVVYQTYTGAMNDN 308
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K Y +DF+ ++ N DR + G CV+ A+PGML G
Sbjct: 309 IKRLYAERAKEAEATGNSAGGGGPWDFRFIRSLKNLDR--FEDIGGCVMLASPGMLQNGV 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLM--------------SGN----PTIELEG 147
S E+ + WAPS+ N + + GY + GT+ ++M +G P + E
Sbjct: 367 SRELLERWAPSDKNGVIITGYSVEGTMAKQIMQEPDHIQAVMSRSLAGGGRRAPGADSEK 426
Query: 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS------ 201
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 427 VMIPRRCSVQEFSFAAHVDGTENREFIEEVNAPAVILVHGEQHNMMRLKSKLLSLNAGKV 486
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y P N E + IP
Sbjct: 487 DKDKMKVYSPRNCEELRIP 505
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 20/239 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P F+LG AQEL ++LD+YWE+ + ++F++ L + Y+
Sbjct: 238 IHATLTKGGRVLMPVFSLGNAQELLLILDEYWEKNEDLQNISVFFASKLARKCMAVYQTY 297
Query: 59 ISWT------SQKVKETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
S S ++ + + FDFK + + D GP V+ A+PGML G S ++ +
Sbjct: 298 TSIMNDNIRLSSRIGQKSSPFDFKYIKSIKDLGKFSDMGPSVVVASPGMLQAGVSRQLLE 357
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE---GTKIDVRCQIHQLAFSPHTDGK 168
WAP NL+ + GY + GT+ L++ TI+ I R + +++F+ H D +
Sbjct: 358 KWAPDPKNLVVMTGYSVEGTMAKDLLNEPHTIKSAVNPDITIPRRINVSEISFAAHVDFQ 417
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKE--------RIQSELGIKCYDPANNESMCIP 219
+ ++ ++P +ILVHG+ M LK R +E +K ++P N E + IP
Sbjct: 418 QNSEFIEKVAPSKIILVHGDSVPMGRLKSALLSKYSARKGTEQEVKVFNPKNCEPLKIP 476
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 12/230 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V++ + GGKVL+P ALGRAQEL ++L+D+W++ VPIY ++ L +A Y+
Sbjct: 232 VYQILNRGGKVLLPVVALGRAQELLLILEDHWKKHPELANVPIYQASALARRAMTVYQTY 291
Query: 59 ISWTSQKVK---ETYNAFDFKNVHNFDRSL-IDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +K E N F F +V + + +D GPCV+ ATP ML G S E+F+ W
Sbjct: 292 INVLNSDMKAAFEEANPFVFNHVQHLSHAGGLDDVGPCVVLATPSMLQSGLSRELFEMWC 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + + + GT+ +++S +I G +I ++ + ++FS H D
Sbjct: 352 GDANNGVIIADFAVQGTLAREILSDCKSITSRNGGEIPLKMSVDAISFSAHADYPQTQQF 411
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
+ L+P HV+LVHGE +M LK ++ + + Y P N +S+ I
Sbjct: 412 LDALAPPHVVLVHGETGEMGKLKRALEGKAAADGKTMSVYSPKNCQSVEI 461
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE ++PIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------EL 145
E+ + WAP+E N + + GY + GT+ ++++ I E
Sbjct: 370 RELLERWAPNERNGVVMTGYSVEGTMAKQILNEPEQIPAVMSRATTGLVRRGMAAGNEEE 429
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ +S VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCTVDEVSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAE 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y P N E + IP
Sbjct: 490 KTVKVKVYTPGNCEEVRIP 508
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWAKHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDN 308
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK ++ + DR + G CV+ A+PGML G
Sbjct: 309 IKRLFRERMAEAEASGDSAGKGGPWDFKFIRSLKSIDR--FEDVGGCVMLASPGMLQNGV 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+ + WAP+E N + + GY + GT+ +LM P E E
Sbjct: 367 SRELLERWAPNEKNGVIITGYSVEGTMAKQLMQEPEQIQAVMTRSSAGGRRGPGGESEKV 426
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ + VILVHGE M LK ++ S
Sbjct: 427 MIPRRCTVQEFSFAAHVDGNENREFIEEVGAPVVILVHGEVHNMMRLKSKLLSLNANKTN 486
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 487 KVKVYSPKNCEELRIP 502
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE ++PIY+ + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------EL 145
E+ + WAP+E N + + GY + GT+ ++++ I E
Sbjct: 370 RELLERWAPNERNGVVMTGYSVEGTMAKQILNEPEQIPAVMSRATTGLVRRGMAAGNEEE 429
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
+ I RC + +++F+ H DG + ++ +S VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCTVDEVSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAE 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y P N E + IP
Sbjct: 490 KTVKVKVYTPGNCEEVRIP 508
>gi|403373777|gb|EJY86813.1| Cleavage and polyadenylation specificity factor subunit 3
[Oxytricha trifallax]
Length = 755
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 11/220 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQA----NMY 54
VH V GGK L+P FALGRAQE+ ++L++YW++ VPIY+S L ++ Y
Sbjct: 241 VHDIVKRGGKCLLPVFALGRAQEILLILNEYWQKNPDIQNVPIYYSGSLAQKSLTVFQTY 300
Query: 55 YKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
M+ +++ N F F+ + F+ ++ P V+ A+PGML G S ++F WA
Sbjct: 301 RNMMGDQLRMELESGNNPFHFEPITTFND---ESEFPLVIMASPGMLQNGQSRDLFVKWA 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
P N I GY + GT+ +M+ + + +++++ + ++FS H D + + +
Sbjct: 358 PDPKNGIVFTGYSVEGTLAKSVMNRPKILTVAEQQVELKLSVEYISFSAHADYQHTSEYI 417
Query: 175 KFLSPQHVILVHGEKPKMATLKERIQSEL--GIKCYDPAN 212
K L P +++LVHG+ +M L+ +Q+ IK P N
Sbjct: 418 KQLQPPNIVLVHGDANEMKKLQNDLQARYKDKIKILTPKN 457
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYW--ERMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW R R PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHRDYQRYPIYYASNLARKCMLVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK ++ + DR + G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGAGKGGPWDFKFIRSLKSIDR--FEDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----------------EGT 148
S E+ + WAPSE N + + GY + GT+ ++M I+ E
Sbjct: 368 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPEQIQAVMTRSSAGGRRAPGGDSEKV 427
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ +S VILVHGE M LK ++ S
Sbjct: 428 MIPRRCTVQEYSFAAHVDGTENREFIEEVSAPVVILVHGEVHNMMRLKSKLLSLNANKTD 487
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 488 KVKVFSPRNCEELRIP 503
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 250 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTY 309
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + ID GP V+ A+PG L G S ++F
Sbjct: 310 INSMNERIRNQFAQSNPFHFKHIDPLNS--IDNFHDVGPSVVMASPGSLQSGLSRQLFDK 367
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + G++ +++ + L G + QI ++FS H D
Sbjct: 368 WCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTS 427
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 428 GFLGELCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSV 475
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE + PIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGNKSVSVGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIG--------------NKLMSGN-----PTIELEG 147
E+ + WAPS+ N + + GY + GT+ +K+ +G+ P + E
Sbjct: 370 RELLERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDED 429
Query: 148 TKIDV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
K+ + RC + +++F+ H DG ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCTVDEVSFAAHVDGVENRTFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNAD 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y PAN + + IP
Sbjct: 490 KAVKVKVYTPANCDEVRIP 508
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 124/256 (48%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHAEFQKFPIYYASNLARKCMVVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGSGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+ + WAP++ N + + GY + GT+ ++M P E E
Sbjct: 368 SRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTTAGARRGPGGESEKL 427
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S
Sbjct: 428 FIPRRCSVAEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNAGKTQ 487
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 488 KVKVFSPKNCEELRIP 503
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 250 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTY 309
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + ID GP V+ A+PG L G S ++F
Sbjct: 310 INSMNERIRNQFAQSNPFHFKHIDPLNS--IDNFHDVGPSVVMASPGSLQSGLSRQLFDK 367
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + G++ +++ + L G + QI ++FS H D
Sbjct: 368 WCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTS 427
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 428 GFLGELCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSV 475
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPAFALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 250 IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTY 309
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + ID GP V+ A+PG L G S ++F
Sbjct: 310 INSMNERIRNQFAQSNPFHFKHIDPLNS--IDNFHDVGPSVVMASPGSLQSGLSRQLFDK 367
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PGY + G++ +++ + L G + QI ++FS H D
Sbjct: 368 WCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTS 427
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 428 GFLGELCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSV 475
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGSMNDN 308
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DF+ ++ + DR + G CV+ A+PGML G
Sbjct: 309 IKRLFRERLAESESSGDGAGKGGPWDFRFIRSLKSLDR--FEDVGGCVMLASPGMLQNGV 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGN-------PTIELEGT 148
S E+ + WAPSE N + + GY + GT+ +L MS N P + E
Sbjct: 367 SRELLERWAPSEKNGVIITGYSVEGTMAKQLLQEPEQIQAVMSRNIAGARRGPGGDAEKV 426
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE M LK ++ S E
Sbjct: 427 MIPRRCTVQEFSFAAHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNATKEH 486
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 487 KVKVFSPRNCEELRIP 502
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 48/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWGKHAEFQKYPIYYASNLARKCMLVYQTYVGSMNDN 308
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK ++ + DR + G CV+ A+PGML G
Sbjct: 309 IKRLFRERLAESESSGDGAGKGGPWDFKFIRSLKSIDR--FEDVGGCVMLASPGMLQNGV 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-------------------LE 146
S E+ + WAPSE N + + GY + GT+ +M TI+ E
Sbjct: 367 SRELLERWAPSEKNGVIITGYSVEGTMAKHIMQEPDTIQAVMSRNIAGARRGPGGGGDAE 426
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + + +F+ H DG + ++ ++ VILVHGE M LK ++ S
Sbjct: 427 KVMIPRRCTVQEFSFAAHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNANK 486
Query: 202 ELGIKCYDPANNESMCIP 219
E +K + P N E + IP
Sbjct: 487 EHKVKVFSPKNCEELRIP 504
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 48/259 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE + PIY+ + + + Y+ I +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 66 VKETYNA-----------------FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFS 106
+K + +DF+ V + RSL D G CV+ A+PGML G S
Sbjct: 311 IKRLFRQRMAEAEASGNKSVSVGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTS 369
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIG--------------NKLMSGN-----PTIELEG 147
E+ + WAPS+ N + + GY + GT+ +K+ +G+ P + E
Sbjct: 370 RELLERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDED 429
Query: 148 TKIDV--RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS---- 201
K+ + RC + +++F+ H DG ++ ++ VILVHGEK +M LK ++ S
Sbjct: 430 QKVMIPRRCTVDEVSFAAHVDGVENRTFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNAD 489
Query: 202 -ELGIKCYDPANNESMCIP 219
+ +K Y PAN + + IP
Sbjct: 490 KAVKVKVYTPANCDEVRIP 508
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGSMNDN 308
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DF+ ++ + DR + G CV+ A+PGML G
Sbjct: 309 IKRLFRERLAESESSGDGAGKGGPWDFRFIRSLKSLDR--FEDVGGCVMLASPGMLQNGV 366
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKL----------MSGN-------PTIELEGT 148
S E+ + WAPSE N + + GY + GT+ +L MS N P + E
Sbjct: 367 SRELLERWAPSEKNGVIITGYSVEGTMAKQLLQEPEQIQAVMSRNIAGARRGPGGDAEKV 426
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE M LK ++ S E
Sbjct: 427 MIPRRCTVQEFSFAAHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNATKEH 486
Query: 204 GIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 487 KVKVFSPRNCEELRIP 502
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR--VPIYFSAGLTIQANMYYKML 58
V K + GG+ LIP FALGRAQEL I+LD+YWE VPIY+ + L QA Y
Sbjct: 232 VTKIIKRGGRCLIPIFALGRAQELLIILDEYWESHPEYNGVPIYYGSNLAKQAIAAYNAF 291
Query: 59 ISWTSQKVKETYNAFDFKNV-----HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+ +V F+F V ++FD SL PCV+ +P ML G S ++F+ W
Sbjct: 292 YQDHNSRVVTAKGKFEFSYVKYIRDYDFDDSL-----PCVVLCSPAMLQNGMSRKIFEAW 346
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ +N + +PGY + GT+ LM I L G I + I ++FS H D
Sbjct: 347 CSNSVNGLIIPGYIVDGTLPQVLMKNPAEITTLSGKIIPRKISIDYVSFSGHADFNQTSR 406
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQS---ELGIKCYDPANNESMCIPSTHYVKAGAS 229
+ L P+ ++L+HG M LKE++ E G++ Y P +C +T + ++ S
Sbjct: 407 FITELKPKRIVLIHGVCGLMMQLKEKLLQMFVEDGLEVYTPG----LCEKATMWFQSNPS 462
Query: 230 DAFIRSCMNPN 240
A I ++ N
Sbjct: 463 -AIITGGLSDN 472
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWAKHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK ++ + DR + G CV+ A+PGML G
Sbjct: 310 IKRLFRERMAEAEASGDGAGKGGPWDFKFIRSLKSIDR--FEDVGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------------GNPTIELEGT 148
S E+ + WAPSE N + + GY + GT+ +M P + E
Sbjct: 368 SRELLERWAPSEKNGVIITGYSVEGTMAKHIMQEPEQIQAVMTRSSAGGRRGPGGDAEKV 427
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ + VILVHGE M LK ++ S
Sbjct: 428 MIPRRCTVQEFSFAAHVDGTENREFIEEVGAPVVILVHGEVHNMMRLKSKLLSLNANKTN 487
Query: 204 GIKCYDPANNESMCIP 219
+K Y P N E + IP
Sbjct: 488 KVKVYSPRNCEELRIP 503
>gi|344302811|gb|EGW33085.1| hypothetical protein SPAPADRAFT_66091 [Spathaspora passalidarum
NRRL Y-27907]
Length = 762
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 21/239 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALG QEL ++LD+YW + +Y+++ L + Y+
Sbjct: 235 IHATLTKGGRVLLPVFALGNTQELLLILDEYWNNNEDLQNINVYYASSLAKKCMAVYETY 294
Query: 59 ISWTSQKVK-------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
S + K++ N FDFK + + D GP V+ A PGML G S ++
Sbjct: 295 TSIMNDKIRLSASSSGHKSNPFDFKYIKSIRDLGKFQDMGPSVVIAAPGMLQAGISRQLL 354
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGT---KIDVRCQIHQLAFSPHTDG 167
+ WAP NL+ L GY + GT+ +L+ TI+ I R I +++F+ H D
Sbjct: 355 EKWAPDPKNLVILTGYSVEGTMAKELLKEPHTIQSVNNPEMTIPRRIGIEEISFAAHVDF 414
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLK--------ERIQSELGIKCYDPANNESMCI 218
+ + ++ +SP +ILVHG+ M LK R +E +K ++P N E + I
Sbjct: 415 QQNSEFIEKVSPSKIILVHGDSVPMGRLKSALLSKYSSRKGTEQEVKVFNPKNCEEVKI 473
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 23/239 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+ L+P FALGRAQE+ ++LD+YW+ VPIY+++ L + Y+
Sbjct: 225 IHSTIQQGGRCLLPVFALGRAQEILLILDEYWQNNPELQNVPIYYASDLAKKCMAVYQRY 284
Query: 59 ISWTSQKVKETY-----NAFDF---KNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
++ + +++ + N F F KN+ N ++ I+ VL A+PGML G S ++
Sbjct: 285 VNMMNDSIRKKFTETNQNPFHFKYIKNITNIEK--INDLDSSVLIASPGMLQNGISRKIL 342
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLM---SGNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
+ W+P N L GY + GT+ L+ S P+I I + I +++F+ H D
Sbjct: 343 EKWSPDPRNSCILTGYSVEGTMAKILLTEPSEIPSIINPDVMIPRKINIEEISFAAHVDY 402
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS--------ELGIKCYDPANNESMCI 218
+ ++ ++P+ +ILVHGE +M LK + S E IK Y+P N+ + +
Sbjct: 403 EQNSKFIELVNPKAIILVHGETNQMGRLKSALLSKYQKFKGTENEIKVYNPRNSSKLSL 461
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 12/226 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQA-NMYY 55
+H ++ GG+VLIPA+ALGRAQEL ++LD+YW E N +PIY+++ L + +Y
Sbjct: 236 IHSTISQGGRVLIPAYALGRAQELLLILDEYWANHPELQN--IPIYYASPLAKKCLTVYE 293
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+S + N F FK++ + GP V+ A+PG L G S ++F W
Sbjct: 294 TYTLSMNDRIQNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWC 353
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N +PGY + GT+ +++ + L G + Q+H ++FS H D
Sbjct: 354 SDKKNSCVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAF 413
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELG---IKCYDPANNESM 216
++ L+P ++ILVHG +M LK+++ ++ K P N +S+
Sbjct: 414 LEELNPPNIILVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSV 459
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 27/243 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG++L+P FALGRAQEL ++L++YW + + IY+++ L + Y+
Sbjct: 244 IHSTLLKGGRILMPVFALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCMAVYQTY 303
Query: 59 ISWTSQKVKET---------YNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGFS 106
+ + ++ T N F FK ++ N D+ GPCV+ A+PGML G S
Sbjct: 304 TNIMNDSIRLTTSATNSSKKQNPFQFKFIKSIKNLDK--FQDFGPCVVVASPGMLQNGVS 361
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGTKIDVRCQIHQLAFSP 163
E+ + WAP N + + GY + GT+ L++ TI+ I R I +++F+
Sbjct: 362 RELLERWAPDPKNAVIMTGYSVEGTMAKDLLTEPHTIQSAMNSDMTIPRRLSIEEISFAA 421
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLK--------ERIQSELGIKCYDPANNES 215
H D + ++ ++P +ILVHGE M LK R +E +K ++P N +
Sbjct: 422 HVDFQQNASFIEKVNPSKIILVHGESNPMGRLKSALLSKYASRKGTEQEVKVFNPRNCDE 481
Query: 216 MCI 218
+ I
Sbjct: 482 VTI 484
>gi|302412663|ref|XP_003004164.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
gi|261356740|gb|EEY19168.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
Length = 730
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 143 GGRVLMPVFALGRAQELLLILDEYWGKHPDFQKYPIYYASNLARKCMVVYQTYVGAMNDN 202
Query: 66 VKETY-----------------NAFDF---KNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DF +++ N DR D G CV+ A+PGML G
Sbjct: 203 IKRLFREGMAQAEASGDGSGKGGPWDFNYIRSLKNLDR--FDDLGGCVMLASPGMLQNGV 260
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTK- 149
S E+ + WAP++ N + + GY + GT+ ++M I+ +G K
Sbjct: 261 SRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTMANARRGPGGDGEKF 320
Query: 150 -IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S +
Sbjct: 321 LIPRRCSVQEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNANKSI 380
Query: 204 GIKCYDPANNESMCIP 219
K + P N E + IP
Sbjct: 381 KAKIFSPKNCEELRIP 396
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 125/250 (50%), Gaps = 39/250 (15%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANM--------YYKM 57
GG+VL+P FALGRAQEL ++LD+YWE ++PIY+ + M +M
Sbjct: 297 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCAMNDNIKRLFRQRM 356
Query: 58 LISWTSQKVKETYNAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ S + +DF+ V + RSL D G CV+ A+PGML G S E+ + WAP
Sbjct: 357 AEAEASGDKSVSAGPWDFRFVRSL-RSLERFDDVGGCVMLASPGMLQTGTSRELLERWAP 415
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------ELEGTKIDVRC 154
+E N + + GY + GT+ ++++ I E + I RC
Sbjct: 416 NERNGVVMTGYSVEGTMAKQILNEPEQIPAVMSRATTGLVRRGMAAGNEEEQKVMIPRRC 475
Query: 155 QIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYD 209
+ +++F+ H DG + ++ +S VILVHGEK +M LK ++ S + +K Y
Sbjct: 476 TVDEVSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKVYT 535
Query: 210 PANNESMCIP 219
P N E + IP
Sbjct: 536 PGNCEEVRIP 545
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 29/247 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+VL+P FALG AQE+ ++L++YWE+ V +Y+ + L + Y+
Sbjct: 247 IHATITRGGRVLLPVFALGNAQEILLILEEYWEKNEDLHNVNVYYCSDLARKCMAVYETY 306
Query: 59 ISWTSQKVK---------------ETYNAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLT 102
+ K++ N FDFK + + + S GP V+ ATPGML
Sbjct: 307 TGIMNDKIRLSSSSSSSTSSSNNSTKSNPFDFKYIKSIKNLSKFSDLGPSVVVATPGMLQ 366
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGN---PTIELEGTKIDVRCQIHQL 159
G S ++ + WAP + NL+ L GY + GT+ +M P+ I R + ++
Sbjct: 367 AGVSRQLLEKWAPEQKNLVILTGYSVEGTMAKDIMKEPQVIPSFNNPDLSIPRRIGVEEI 426
Query: 160 AFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPA 211
+F+ H D + D + +SP +ILVHG+ M LK + S+ +K ++P
Sbjct: 427 SFAAHVDFQQNSDFIDKVSPSKIILVHGDSIPMGRLKSALLSKYSSRKGTDKEVKVFNPR 486
Query: 212 NNESMCI 218
N E +CI
Sbjct: 487 NCEELCI 493
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 36/246 (14%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWER--MNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YWE+ PIY+++ L + Y+ I+ + K
Sbjct: 244 GGRVLMPVFALGRAQELLLILDEYWEKHPAYQSYPIYYASNLARKCMDVYRTYINTMNDK 303
Query: 66 VK------ETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+K E N +DF+ V + DR + G CV+ A+PGML G S E+ + W P
Sbjct: 304 IKRAMFEGEGRNPWDFRWVRSLKTIDR--FEDVGGCVMLASPGMLQNGVSRELLERWCPD 361
Query: 117 EMNLITLPGYCLAGTIGNKLM----------SGNPTIELEGTKID------VRCQIHQLA 160
N + + GY + GT+ ++M + N + +D RC + +L+
Sbjct: 362 PRNGLVITGYSVEGTMAKQIMNEPTEIPAVVTANRSGSTASRGVDGQVMVPRRCSVEELS 421
Query: 161 FSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-------IKCYDPANN 213
F+ H D ++ + + VILVHGE+ M LK + S+ +K Y+P N
Sbjct: 422 FAAHVDYAQNSGFIEEVGAKVVILVHGEQNNMGRLKSALLSKNSDRRDKDKVKIYNPKNC 481
Query: 214 ESMCIP 219
E + IP
Sbjct: 482 EELRIP 487
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERM--NLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWGKHPDYQKYPIYYASNLARKCMVVYQTYVGAMNDN 309
Query: 66 VKETY-----------------NAFDF---KNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DF +++ N DR D G CV+ A+PGML G
Sbjct: 310 IKRLFREGMAQAEASGDGSGKGGPWDFNYIRSLKNLDR--FDDLGGCVMLASPGMLQNGV 367
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---------------EGTK- 149
S E+ + WAP++ N + + GY + GT+ ++M I+ +G K
Sbjct: 368 SRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTMANARRGPGGDGEKF 427
Query: 150 -IDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----EL 203
I RC + + +F+ H DG + ++ ++ VILVHGE+ M LK ++ S +
Sbjct: 428 LIPRRCSVQEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNANKSV 487
Query: 204 GIKCYDPANNESMCIP 219
K + P N E + IP
Sbjct: 488 KAKIFSPKNCEELRIP 503
>gi|401882746|gb|EJT46990.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 2479]
gi|406700483|gb|EKD03650.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 8904]
Length = 738
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
V V GGKVL+P + G QEL +LLDDYW + L+ VPIYF++GL + YK
Sbjct: 269 VSNIVRRGGKVLMPIPSFGNGQELALLLDDYWNDHPELQGVPIYFASGLFQRGMRVYKKY 328
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+ + ++ + N FDFK V D +D PCV+ A+ ++ G S E+ + W
Sbjct: 329 VHTMNANIRSRFARRDNPFDFKYVKWLKDPKRLDHKQPCVVMASAQFMSFGLSRELLEEW 388
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIE--LEGTKIDVRCQIHQLAFSPHTDGKGIM 171
AP N + + GY + GT+ L+ IE G I RC + +++F H D
Sbjct: 389 APDPKNGVIVTGYSIEGTMARTLLGEPDHIESLRGGRSIPRRCTVKEISFGAHVDYAQNS 448
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
++ + QHV+LVHGE +M L+ ++ + I + P N E + +
Sbjct: 449 KFIQEIGAQHVVLVHGEASQMGRLRAALRDQYATRGQEINIHTPKNLEPLVL 500
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 37/247 (14%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P A+G QEL ++L+DYW+R R PIY+++GL + + Y+ + + +
Sbjct: 260 GGRVLMPTTAVGNTQELLLILEDYWQRHEEYRRFPIYYASGLARKVMVVYQTYVDNMNDR 319
Query: 66 VKETYNA-------------FDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+K + A +DF+ V DR + G V+ A+PGML G S +
Sbjct: 320 IKAKFQASAAAAGDGGAAGPWDFQFVRALKGVDR--FEDVGGSVVLASPGMLQNGPSRAL 377
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLM--------SGNPTIEL---------EGTKIDV 152
+ WAP N + + GY + GT+ ++M N T + E I
Sbjct: 378 LERWAPDPKNGVVITGYSVEGTMAKQIMLEPDSIAAVTNRTANMSLGKRAGAEEQQMIPR 437
Query: 153 RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPAN 212
RC + + F+ H DG+ D ++ VILVHGEK M LK R+ S +K Y PAN
Sbjct: 438 RCTVQEFNFAVHVDGQENRDFIEETGAPVVILVHGEKHNMGRLKSRLLSLKKMKVYSPAN 497
Query: 213 NESMCIP 219
E + IP
Sbjct: 498 CEEVRIP 504
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H V+ GG+VLIPA+ALGRAQEL ++LD+YW ++PIY+++ L + Y+
Sbjct: 238 IHNTVSQGGRVLIPAYALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTY 297
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKH 112
I+ +++++ + N F FK++ + ID GP V+ A+PG L G S ++F
Sbjct: 298 INSMNERIRNQFAQSNPFHFKHIEPLNS--IDNFHDVGPSVVMASPGSLQSGLSRQLFDK 355
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGIM 171
W + N +PG+ + G++ +++ + L G + QI ++FS H D
Sbjct: 356 WCTDKKNTCVIPGFAVEGSLVKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFLQTS 415
Query: 172 DLVKFLSPQHVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESM 216
+ L P ++ILVHGE +M LK+++ ++ K P N +S+
Sbjct: 416 GFLDELRPPNIILVHGEANEMGRLKQKLTTQFDGTNTKIVSPKNCQSV 463
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG++L+P FALGRAQEL ++L++YW + + ++F++ L + Y+
Sbjct: 236 IHSTLLKGGRILMPVFALGRAQELLLILEEYWSQNEDLHNINVFFASSLARKCMAVYQTY 295
Query: 59 ISWTSQKVKETY--------NAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLE 108
+ + ++ N F FK++ RSL GPCV+ A PGML G S E
Sbjct: 296 TNIMNDNIRHGVSSASGGKSNPFQFKHI-KLIRSLDKFQDIGPCVVVAAPGMLQNGVSRE 354
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDV----RCQIHQLAFSPH 164
+ + WAP N + + GY + GT+ +L++ TI+ DV R I +++F+ H
Sbjct: 355 LLERWAPDAKNAVIMTGYSVEGTMAKELLTEPHTIQ-SSQNADVTIPRRMAIEEISFAAH 413
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLK--------ERIQSELGIKCYDPANNESM 216
D + + ++P +ILVHGE M LK R +E +K ++P N + +
Sbjct: 414 VDFQENAGFIDMINPSKIILVHGESNPMGRLKSALLSKYSSRKGTEQEVKVFNPRNCDEL 473
Query: 217 CI 218
I
Sbjct: 474 SI 475
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 50/258 (19%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGAMNDN 310
Query: 66 VKETY-----------------NAFDFKNVHNFDRSL-----IDAPGPCVLFATPGMLTG 103
+K + +DFK F RSL + G CV+ A+PGML
Sbjct: 311 IKRLFRERMAEAEASGDGAGKGGPWDFK----FIRSLKSIDRFEDVGGCVMLASPGMLQN 366
Query: 104 GFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-----------------LE 146
G S E+ + WAPSE N + + GY + GT+ ++M I+ E
Sbjct: 367 GVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPEHIQAVMSRNTGGGRRGPGRDAE 426
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS----- 201
I RC + + +F+ H DG + ++ ++ VILVHGE M LK ++ S
Sbjct: 427 KVLIPRRCTVQEYSFAAHVDGTENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNANK 486
Query: 202 ELGIKCYDPANNESMCIP 219
+K + P N E + IP
Sbjct: 487 TSKVKVFSPKNCEELRIP 504
>gi|409095356|ref|ZP_11215380.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus zilligii AN1]
Length = 648
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y +L VPIY G+ +A +
Sbjct: 413 IHQTIKRGGKVLIPAMAVGRAQEIMMVLEEYARVGSLEVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVKET-----YNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++E YN F FK+V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 472 YLSKNLREQIFHEGYNPFLNPIFKSVANGRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I L Y GT+G ++ G I L G I+V ++H + FS H
Sbjct: 532 KQLAPDPKNSIILVSYQSEGTLGRQVQRGLKEIPLVGEDGRTEVINVNMEVHTIEGFSGH 591
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D +M V L P+ +I VHGE K L I + G+ P+N +++
Sbjct: 592 ADRGELMSYVAKLKPRPERIITVHGEAQKCLDLASSIHKKFGLPTRAPSNLDAI 645
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 29/244 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE---RMNLRVPIYFSAGLTIQANMYYKM 57
V + GG+VL+P FALGRAQEL ++LD+YW +N +PIY+ + L + Y+
Sbjct: 216 VQMILKRGGRVLMPVFALGRAQELLLILDEYWSNHPELN-SIPIYYISNLAAKCMKVYQT 274
Query: 58 LISWTSQKVKETYNA----FDF-------------KNVHNFDRSLIDAPGPCVLFATPGM 100
I ++++K +N + F N+ D+ D GPCV+ A+PG
Sbjct: 275 FIHGMNEEIKSKFNKGINPWTFFREGKGLFKKGYVTNLKTLDK--FDDRGPCVVMASPGF 332
Query: 101 LTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQL 159
+T G S E+ + WAP N + + GY + GT+ +++ I ++G KI R ++ +
Sbjct: 333 MTNGASRELLERWAPDRRNGLLVTGYSIEGTMAREMLKEPQEITGIKGNKIPRRIEVIYI 392
Query: 160 AFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNE 214
+FS H D + + P H++LVHGE M L+ ++ + ++ Y P N E
Sbjct: 393 SFSAHVDYTQNAAFIDQVMPTHLVLVHGEFNNMTRLRNALKDKYLLAKNEMQIYTPRNVE 452
Query: 215 SMCI 218
++ I
Sbjct: 453 TLRI 456
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 21/229 (9%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLR---VPIYFSAGLTIQANMYYKMLISWTSQ 64
GG+VL+P ALGRAQEL +LLD+YWE +PIY ++ + +A Y+ + ++
Sbjct: 245 GGRVLMPIVALGRAQELLLLLDEYWEAHKSELGGIPIYQASSMMSKALGVYQTYVESLNE 304
Query: 65 KVKETY---NAFDFKNVHNFDRS---LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
+K+ + N F F++V + D GPCV+ ATP L G S + F+ W
Sbjct: 305 DIKKVFHDRNPFKFRHVQTLKNPAHFIADYSGPCVIMATPSGLQSGASRDFFEAWCEDAR 364
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTD---GKGIMDLV 174
N + + + GT+ +++ G +I EG ++ +R +H ++FS H D G +D V
Sbjct: 365 NTCIICDFAVQGTLAKEILGGPSSITTREGRRVPLRIAVHNISFSAHADFDQTSGFLDTV 424
Query: 175 KFLSPQHVILVHGEKPKMATLKERIQ-----SELGIKCYDPANNESMCI 218
K P HV+LVHGE +M L + ++ + L + Y P +++ I
Sbjct: 425 K---PPHVVLVHGEYGEMRKLAKALKDGAKAAGLAREVYTPVLQQTVAI 470
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 24/241 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H + GG++L+P FALGRAQEL ++L++YW + +L + ++F++ L + Y+
Sbjct: 236 IHLTLLKGGRILMPVFALGRAQELLLILEEYWLQNEDLHNINVFFASSLARKCMAVYQTY 295
Query: 59 ISWTSQKVKE--------TYNAFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLE 108
+ + ++ N F FK++ RSL GPCV+ A PGML G S E
Sbjct: 296 TNIMNDNIRHGVSSASGGKLNPFQFKHI-KLIRSLDKFQDIGPCVVVAAPGMLQNGVSRE 354
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDV--RCQIHQLAFSPHT 165
+ + WAP N + + GY + GT+ +L++ TI+ L+ + + R I +++F+ H
Sbjct: 355 LLERWAPDAKNAVIMTGYSVEGTMAKELLTEPHTIQSLQNADVTIPRRMAIEEISFAAHV 414
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLK--------ERIQSELGIKCYDPANNESMC 217
D + + ++P +ILVHGE M LK R +E +K ++P N + +
Sbjct: 415 DFQENAGFIDMINPLKIILVHGESNPMGRLKSALLSKYSSRKGTEQEVKVFNPRNCDELL 474
Query: 218 I 218
I
Sbjct: 475 I 475
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++LD+YW + + PIY+++ L + + Y+ + +
Sbjct: 246 GGRVLMPVFALGRAQELLLILDEYWGKHGEYQKFPIYYASNLARKCMVVYQTYVGAMNDN 305
Query: 66 VKETY-----------------NAFDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGF 105
+K + +DFK + N DR D G CV+ A+PGML G
Sbjct: 306 IKRLFRERMAEAEASGDGSGKGGPWDFKYIRSLKNLDR--FDDVGGCVMLASPGMLQNGV 363
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQ 158
S E+ + WAP+E N + + GY + GT+ ++M I+ + + + +
Sbjct: 364 SRELLERWAPNEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMPPPARDADPEERARSVAE 423
Query: 159 LAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQS-----ELGIKCYDPANN 213
+F+ H DG + ++ ++ VILVHGE+ M LK ++ S +K + P N
Sbjct: 424 YSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNAGKTTKVKVFSPKNC 483
Query: 214 ESMCIP 219
E + IP
Sbjct: 484 EELRIP 489
>gi|300176709|emb|CBK24374.2| unnamed protein product [Blastocystis hominis]
Length = 711
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 32/237 (13%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER---MNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GKVLIP FALGR QEL +LL++YWE+ ++ I + L ++ M ++ +
Sbjct: 207 GKVLIPVFALGRTQELLLLLNEYWEKHPEISRHGNIVYLNPLAKKSMMLFQAHKHTILSR 266
Query: 66 VKETYNAFDFKNV----------------HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++E N FD NV F R P PCV+ +P M+ G S +V
Sbjct: 267 LEE--NPFDLPNVDIPDPIDSVSPFFSPHRQFLRDFNKLP-PCVILCSPAMMENGTSRDV 323
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK---IDVRCQIHQLAFSPHTD 166
+ A E NL+ L GYC+A TI +L + I L G + IDV+C++ ++FS H+D
Sbjct: 324 LERMASGENNLVILTGYCMARTIARRLQDNDRIIPLSGKQMETIDVKCKVVTISFSAHSD 383
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKM----ATLKERIQSELG---IKCYDPANNESM 216
G ++ P+ V+LVHGE +M + LKE+++ + I Y P N + +
Sbjct: 384 FPGTSSFIQATKPERVVLVHGEVSRMNDLVSGLKEKLEDLVNRDLISFYTPENQKRL 440
>gi|15669421|ref|NP_248231.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
gi|2496166|sp|Q58633.1|Y1236_METJA RecName: Full=Uncharacterized protein MJ1236
gi|1591868|gb|AAB99240.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
Length = 634
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 19/229 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
GGKVLIP F +GRAQEL ++L++ + + P+Y G+ +A + + S++++
Sbjct: 406 GGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPEYLSKEMR 464
Query: 68 -----ETYNAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
E N F FK V N R +ID+ PCV+ AT GMLTGG S+E KH AP E
Sbjct: 465 QKIFHEGDNPFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYLKHLAPDE 524
Query: 118 MNLITLPGYCLAGTIGNKLMSG---NPTIELEG--TKIDVRCQIHQL-AFSPHTDGKGIM 171
N I GY GT+G K+ SG P I G I + Q++ + FS H+D K ++
Sbjct: 525 KNAIIFVGYQAEGTLGRKVQSGWKEIPIITRNGKTKSIPINLQVYTIEGFSGHSDRKQLI 584
Query: 172 DLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ L SP+ +I+VHGE+ K + ++ + Y P N +++ +
Sbjct: 585 KYIRRLKPSPEKIIMVHGEESKCLDFADTVRRLFKKQTYVPMNLDAIRV 633
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 40/300 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER--MNLRVPIYFSAGLTIQANMYYKML 58
+ K V GG+ L+P FALGRAQEL ++LD++W +PIY+++ L + Y+
Sbjct: 245 ITKIVTRGGRCLLPVFALGRAQELLLILDEHWSNNPQLHSIPIYYASALAKKCIGIYQTY 304
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I+ + +K++ N F F+ V N + PCV+ A+PGML G S E+F+ W
Sbjct: 305 INMMNDHIKKSSLIKNPFAFQYVKNLKSIDFFEDNSPCVIMASPGMLQSGLSRELFEKWC 364
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + +PGY + GT+ ++++ + ++G + + + ++FS H D +
Sbjct: 365 GDRRNGVIIPGYSVDGTLAKEILNEPKEVMSMKGNVLKLNMSVDYISFSAHVDFAQNVQF 424
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFI 233
+ P H+ VHGE +M LK I NE + Y +
Sbjct: 425 IDECQPDHLFFVHGEANEMNRLKNVIAQR----------NEKKNVQMELYT--------L 466
Query: 234 RSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDEL 293
R+C EE S K TE ++ I+ E EGILV E S ++ ++EL
Sbjct: 467 RNC------------EEGSFDVKKKTEASIVGDIEGE--FEGILV-ENSGDIQIYRKNEL 511
>gi|66356658|ref|XP_625507.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46226496|gb|EAK87490.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 780
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 11/200 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GK L+P FA+GRAQEL ++L+++W R VPI +++ ++I+ ++
Sbjct: 249 VQSIITRKGKCLLPVFAIGRAQELLLILEEHWSRTPSIQNVPIIYASPMSIKCMRVFETY 308
Query: 59 ISWTSQKVKET----YNAFDFK-----NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ V+ N F F N N + +I PGPCV+ A PGML G S ++
Sbjct: 309 INQCGDSVRRQADLGINPFQFNYIKTVNSLNEIKDIIYNPGPCVVMAAPGMLQNGTSRDI 368
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKG 169
F+ WAP + N I L GY + GT +L I+L I +R + Q++FS H+D
Sbjct: 369 FEIWAPDKRNGIILTGYAVRGTPAYELRKEPEMIQLGEKVIPMRAKFDQISFSAHSDFTQ 428
Query: 170 IMDLVKFLSPQHVILVHGEK 189
+ + L +VILVHGE+
Sbjct: 429 TQEFINSLKVPNVILVHGER 448
>gi|57641363|ref|YP_183841.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus kodakarensis KOD1]
gi|57159687|dbj|BAD85617.1| cleavage and polyadenylation specficity factor subunit homolog
[Thermococcus kodakarensis KOD1]
Length = 648
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVKET-----YNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++E YN F FK+V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 472 YLSKHIREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ G I + G I+V ++H + FS H
Sbjct: 532 KQLAPDPKNSIIFVSYQAEGTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGH 591
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M V + P+ +I VHGE K L I + GI P N +++
Sbjct: 592 ADRRELMSYVARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAI 645
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 121/252 (48%), Gaps = 42/252 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P A+G QEL ++L+DYW+R R P+Y+++GL + + Y+ + +
Sbjct: 259 GGRVLMPTTAVGNTQELMLILEDYWQRHEEYRRFPMYYASGLAKKVMIVYQTYVETMNDT 318
Query: 66 VKETYNA----------------FDF-KNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLE 108
+K + A F+F + + + DR + GP V+ A+PGML G S
Sbjct: 319 IKAKFQASAAAASDSSGAGGPWDFNFIRQLKSMDR--YEDVGPSVVLASPGMLQNGPSRT 376
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------------ELEG 147
+ + WAP N + + GY + GT+ +M+ +I + E
Sbjct: 377 LLERWAPDAKNGVIITGYSVEGTMAKTIMTEPDSIPAVTGKKNTGMNIGKRPGALADGER 436
Query: 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKC 207
I RC + + F+ H DG+ + ++ + VILVHGEK M LK R+ +K
Sbjct: 437 QMIPRRCTVQEFNFAVHVDGQENREFIEEVGAPVVILVHGEKHNMNRLKSRLLGLGKMKV 496
Query: 208 YDPANNESMCIP 219
Y PAN E + IP
Sbjct: 497 YSPANCEEVRIP 508
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 12/206 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GKVL+P FALGRAQE+ ++L++YW+ VPIY+++ L + Y+
Sbjct: 220 VRDIIKRRGKVLLPVFALGRAQEILLILEEYWDNNEDLQNVPIYYASALARRCIGIYQQY 279
Query: 59 ISWTSQKVKETYNAFDF-KNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
SQ K F + +N++ FD D PCV+ A+PGML G S ++F+ W +
Sbjct: 280 ----SQSDKNVDFKFKYIRNINTFD----DRNLPCVVMASPGMLQSGLSRDLFEKWCEDK 331
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKF 176
N + + GYC+ GT+ ++++ +E + G K+ + C + ++FS H D + +
Sbjct: 332 RNGVIIAGYCVQGTLAKEILNEPEEVEGIAGNKLKLNCSVDCISFSAHVDYLQNKEFITS 391
Query: 177 LSPQHVILVHGEKPKMATLKERIQSE 202
P+ + LVHGE +M LK ++ +
Sbjct: 392 CDPEVLFLVHGEFNEMNRLKNALKRD 417
>gi|358060736|dbj|GAA93507.1| hypothetical protein E5Q_00148 [Mixia osmundae IAM 14324]
Length = 1378
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 19/229 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGKVL+PAF+ G +QEL ++LDD+WE+ PIY+ L + Y+ IS SQK
Sbjct: 275 GGKVLLPAFSSGVSQELLLVLDDFWEKNPDLHEFPIYYVTSLASRVLKVYRQHISSQSQK 334
Query: 66 VKETY----NAFDF------KNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+++ N +DF K + + R + D PCV+ ATPGML G S E+ + WA
Sbjct: 335 IQQRAASGDNPYDFGKGRFVKELRSIRRGVADK-SPCVVVATPGMLQPGTSRELLERWAG 393
Query: 116 SEMNLITLPGYCLAGTIGNKLMS-GNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
N + L GY + G++ L + + + +EG +I R + ++F+ H D +
Sbjct: 394 DRRNGLILCGYSVEGSLARDLQAEPDEFMSVEGRRIPRRISVDVISFAQHVDFSQNASFI 453
Query: 175 KFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
+ P ++ILVHGE + TL+ +Q +K Y P N + + I
Sbjct: 454 DAVRPANLILVHGEARNVTTLQAALQKIYADKKDEMKVYAPRNLQPIKI 502
>gi|14591202|ref|NP_143278.1| mRNA 3'-end processing factor [Pyrococcus horikoshii OT3]
gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
gi|3257827|dbj|BAA30510.1| 651aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 651
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 416 IHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTSQKV-----KETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+++ KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 475 YLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ SG I + G + I V ++H + FS H
Sbjct: 535 KQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFSGH 594
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M+ V + P+ +I VHGE K L I + GI P N +++
Sbjct: 595 ADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTI 648
>gi|332159620|ref|YP_004424899.1| mRNA 3'-end processing factor [Pyrococcus sp. NA2]
gi|331035083|gb|AEC52895.1| mRNA 3'-end processing factor, putative [Pyrococcus sp. NA2]
Length = 651
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+HK + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 416 IHKTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIDVPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTSQKV-----KETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+++ KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 475 YLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ SG I + G + I V +++ + FS H
Sbjct: 535 KQLAPDPKNSIIFVSYQAEGTLGRQVQSGAREIPMIGEEGRTEVIKVNMEVYTIDGFSGH 594
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M+ V + P+ VI VHGE K L I + GI P N +++
Sbjct: 595 ADRRELMNYVAKVKPRPERVITVHGEPQKCLDLATSIHKKFGISTRAPNNLDTI 648
>gi|390960706|ref|YP_006424540.1| hypothetical protein CL1_0538 [Thermococcus sp. CL1]
gi|390519014|gb|AFL94746.1| hypothetical protein containing KH domain /beta-lactamase-domain
protein [Thermococcus sp. CL1]
Length = 648
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHQTIRRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVKET-----YNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++E YN F FK+V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 472 YLSRHLREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ G I L G + V ++H + FS H
Sbjct: 532 KQLAPDPKNSIVFVSYQAEGTLGRQVQRGLREIPLVGEDGKTEVVPVNMEVHTIDGFSGH 591
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + ++ + L P+ VI VHGE K L I + GI P N +++
Sbjct: 592 ADRRELISYIARLRPRPERVITVHGEAHKCLDLSTSIHKKFGISTRAPNNLDAI 645
>gi|289192183|ref|YP_003458124.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938633|gb|ADC69388.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
Length = 634
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKVLIP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 399 VSETTDKGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 457
Query: 61 WTSQKVK-----ETYNAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S++++ E N F FK V N R +ID+ PCV+ AT GMLTGG S+E
Sbjct: 458 YLSKEMRQKIFHEGDNPFLSEVFKRVGSTNERRRVIDSDEPCVILATSGMLTGGPSVEYL 517
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQL-AFSPH 164
KH AP E N I GY GT+G K+ G I + + I + Q++ + FS H
Sbjct: 518 KHLAPDEKNAIIFVGYQAEGTLGRKVQRGWKEIPITTRNGKTKSIPINLQVYTIEGFSGH 577
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+D K ++ ++ L SP+ +I+VHGE+ K + ++ + Y P N +++ +
Sbjct: 578 SDRKQLIKYIRRLKPSPEKIIMVHGEESKCLDFADTVRRLFKKQTYVPMNLDAIRV 633
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 21/207 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H VA GG+VL+P ALGRAQEL ++L++YWER VPIY ++GL +A YK
Sbjct: 239 IHTAVARGGRVLLPVVALGRAQELLLILEEYWERHPELHGVPIYQASGLARRAISVYKAY 298
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
I ++ +K + N F+FK++ + + F GM S E+F+ W
Sbjct: 299 IEMMNEDIKRAFTVANPFEFKHISHLKSA--------AHFDDSGM-----SRELFEAWCE 345
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPT--IELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
N + + + + GT+ ++ GNP+ + G K+ +R Q+ ++FS H D +
Sbjct: 346 DARNCVVIADFAVQGTLARDIL-GNPSEVMTRNGVKVPLRMQVDAISFSAHADFPQTSEF 404
Query: 174 VKFLSPQHVILVHGEKPKMATLKERIQ 200
+ L P HV+LVHGE +M LK+ ++
Sbjct: 405 LDALQPPHVVLVHGEATEMGRLKKALE 431
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 129/243 (53%), Gaps = 28/243 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H ++ GG+VL+P FALG AQEL ++L++YW + +L+ + +YF++ L + Y+
Sbjct: 235 IHSTLSKGGRVLMPVFALGTAQELLLILEEYWSQNKDLQNIDVYFASSLARKCLAVYQTY 294
Query: 59 ISWTSQKVKE--TYNAFDFKNVHNFD-----RSL--IDAPGPCVLFATPGMLTGGFSLEV 109
+ + K++ + +++D KN F +SL GP V+ A+PGML GFS ++
Sbjct: 295 TNIMNDKIRSMASSSSYDRKNPFTFKYIKTLKSLDRFQDFGPSVVIASPGMLQSGFSRQL 354
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI------ELEGTKIDVRCQIHQLAFSP 163
+ WAP N + + GY + GT+ L+ PTI E+ T+ R I +++F+
Sbjct: 355 LEKWAPDPKNTVLMTGYSVEGTMAKDLLIEPPTIPSVNNPEMTITR---RLSIEEISFAA 411
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNES 215
H D + + + ++ +ILVHG+ M LK + S+ +K ++P N +
Sbjct: 412 HVDFQQNAEFIGEVNAPRIILVHGDSIPMGRLKSALLSKYANRKGTDQEVKVFNPRNGDE 471
Query: 216 MCI 218
+ I
Sbjct: 472 LKI 474
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 10/210 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR---VPIYFSAGLTIQANMYYKM 57
+ + GG+V++P ALGRAQEL +LLD+YWE +PIY ++ + +A Y+
Sbjct: 213 IRNTINRGGRVIMPVVALGRAQELLLLLDEYWEAHKSELSGIPIYQASSMMSKALGVYQT 272
Query: 58 LISWTSQKVKETY---NAFDFKNVHNFDRS---LIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ + +K + N F F++V + D GPCV+ ATP L G S + F+
Sbjct: 273 YVESLNDDIKRVFHERNPFKFRHVQTLKNPAHFISDYSGPCVIMATPSGLQSGASRDFFE 332
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-EGTKIDVRCQIHQLAFSPHTDGKGI 170
W N + + + GT+ +++ G +I EG ++ +R +H ++FS H D
Sbjct: 333 AWCEDSRNTCIICDFAVQGTLAKEILGGPSSITTREGRRVPLRIAVHNISFSAHADYDQT 392
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQ 200
+ + P HV+LVHGE +M L + ++
Sbjct: 393 SGFLDAVRPPHVVLVHGEYGEMRKLAKALK 422
>gi|380741511|tpe|CCE70145.1| TPA: mRNA 3'-end processing factor, putative [Pyrococcus abyssi
GE5]
Length = 648
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L+DY + PIY G+ +A +
Sbjct: 413 IHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKV-----KETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+++ KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 472 YLSRRLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ SG I + G + I V ++H + FS H
Sbjct: 532 KQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGH 591
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M+ V + P+ VI VHGE K L I + G+ P N +++
Sbjct: 592 ADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTI 645
>gi|14520957|ref|NP_126432.1| mRNA 3'-end processing factor, [Pyrococcus abyssi GE5]
gi|5458174|emb|CAB49663.1| Cleavage and polyadenylation specficity factor [Pyrococcus abyssi
GE5]
Length = 651
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L+DY + PIY G+ +A +
Sbjct: 416 IHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTSQKV-----KETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+++ KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 475 YLSRRLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ SG I + G + I V ++H + FS H
Sbjct: 535 KQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGH 594
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M+ V + P+ VI VHGE K L I + G+ P N +++
Sbjct: 595 ADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTI 648
>gi|378730429|gb|EHY56888.1| endoribonuclease ysh1 [Exophiala dermatitidis NIH/UT8656]
Length = 868
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 125/267 (46%), Gaps = 57/267 (21%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GGKVL+P FALGRAQEL ++L+DYW + + PIY++ + + Y+ I+ +
Sbjct: 254 GGKVLMPVFALGRAQELLLILEDYWSKHPELQKYPIYYTGNTARKCMVVYQTYINAMNDN 313
Query: 66 VKETY-----------NA-------FDF---KNVHNFDRSLIDAPGPCVLFATPGMLTGG 104
+K + NA +DF +++ N DR D G CV+ A+PGML G
Sbjct: 314 IKRIFRERMAEAEAAGNAKGVSAGPWDFRFVRSLRNLDR--FDDVGGCVMLASPGMLQSG 371
Query: 105 FSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS-----------GNPTI---------E 144
S + + WAP N + + GY + GT+ ++S GN + +
Sbjct: 372 MSRVLLERWAPDPRNGVIMTGYNVEGTMARTILSEPEMIPAIMSGGNTGVGQQMGRKGRD 431
Query: 145 LEGT-KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERI---- 199
EG I RC + + F+ H G +D ++ ++ HVILVHGE+ + A L+ R+
Sbjct: 432 DEGAVMIPRRCTVEEFQFAAHVTGVENVDFIEQVASPHVILVHGERSQAARLRSRLLDLN 491
Query: 200 QSELG-------IKCYDPANNESMCIP 219
L K Y P N + IP
Sbjct: 492 SRRLASNPHAHQTKVYSPENGAEIKIP 518
>gi|392575747|gb|EIW68879.1| hypothetical protein TREMEDRAFT_44189 [Tremella mesenterica DSM
1558]
Length = 738
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
V V GG+ L+P + G QEL +LLD+YW E N +PI+F++GL + YK
Sbjct: 245 VSNIVKRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQN--IPIFFASGLFQRGMRVYK 302
Query: 57 MLISWTSQKVKETY----NAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + ++ + N FDFK V R + PCV+ A+ ++ G S E+
Sbjct: 303 TYVHTMNANIRSRFARRDNPFDFKYVKPLKDGRRGDNFKSPCVVMASAQFMSFGLSRELL 362
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKG 169
+ WAP E N + + GY + GT+ L+ IE L GTKI R + +++FS H D
Sbjct: 363 EDWAPGEKNGVIVTGYSIEGTMARTLLGEPDHIESLRGTKIPRRLTVKEISFSAHVDYGQ 422
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
++ + QH++LVHGE +M L+ ++ + + P N E + +
Sbjct: 423 NSRFIQEVGAQHIVLVHGESSQMLRLRAALRDSYSARGQEVNIHTPRNCEPLTL 476
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 42/252 (16%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P A+G QEL ++L+DYW+R + PIY+++GL + + Y+ + +
Sbjct: 259 GGRVLMPTTAVGNTQELLLILEDYWQRHEEYRKFPIYYASGLARKVMVVYQTYVDDMNDT 318
Query: 66 VKETYNA---------------FDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+K + A +DF+ V DR + G V+ A+PGML G S
Sbjct: 319 IKAKFQASAVGQSVGEGGTAGPWDFQFVRALKGIDR--FEDVGGSVVLASPGMLQNGPSR 376
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKL--------------------MSGNPTIELEG 147
+ + WAP N + + GY + GT+ + M +E E
Sbjct: 377 ALLERWAPEAKNGVVITGYSVEGTMAKTILMEPDEIPAVTQNRSANIPSMGKRGGVEGEK 436
Query: 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKC 207
I RC + + F+ H DG+ + ++ + VILVHGEK M LK R+ +K
Sbjct: 437 QMIKRRCTVQEFNFAVHVDGQENREFIEEVGAPVVILVHGEKHNMNRLKSRLLGIGRMKV 496
Query: 208 YDPANNESMCIP 219
Y PAN E + IP
Sbjct: 497 YSPANCEEVRIP 508
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 46/254 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P A+G QEL ++L+D+W R R PIY+++GL + + Y+ + + +
Sbjct: 259 GGRVLMPTTAVGNTQELLLILEDHWHRHEEYRRFPIYYASGLARKVMVVYQTYVDDMNDR 318
Query: 66 VKETYNA---------------FDFKNVH---NFDRSLIDAPGPCVLFATPGMLTGGFSL 107
+K + A +DF+ V DR D G V+ A+PGML G S
Sbjct: 319 IKAKFQASATGPSVGDGGTAGPWDFQFVRALKGVDR--FDDVGGSVVLASPGMLQNGPSR 376
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLM----------------------SGNPTIEL 145
+ + WAP N + + GY + GT+ ++ +G P E
Sbjct: 377 ALLERWAPDSKNGVIITGYSVEGTMAKNILLEPDNIPAVTVDRSAGNVLGKKAGGPDGER 436
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI 205
+ + RC + + F+ H DG+ + ++ + VILVHGEK M LK R+ +
Sbjct: 437 Q--MVPRRCTVQEFNFAVHVDGQENREFIEEVGAPVVILVHGEKHNMNRLKSRLLGTGKM 494
Query: 206 KCYDPANNESMCIP 219
K Y PAN E + IP
Sbjct: 495 KVYSPANCEEVRIP 508
>gi|71654879|ref|XP_816051.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70881152|gb|EAN94200.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 430
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 88/146 (60%), Gaps = 9/146 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GGG+ L+P FALGRAQEL ++L++YWE +PIY+++ L + Y+
Sbjct: 250 VHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTF 309
Query: 59 ISWTSQKVKETY----NAFDFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+S + +VK+ + N F FK +H+ RS D GPCV+ A+PGML G SLE+F+
Sbjct: 310 VSAMNDRVKQQHANHRNPFVFKYIHSLMETRSFEDT-GPCVVLASPGMLQSGISLELFER 368
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMS 138
W N I + GYC+ GTI +++
Sbjct: 369 WCGDRRNGIIIAGYCVDGTIAKDILT 394
>gi|223478352|ref|YP_002582770.1| RNA-metabolising metallo-beta-lactamase family protein
[Thermococcus sp. AM4]
gi|214033578|gb|EEB74405.1| RNA-metabolising metallo-beta-lactamase family [Thermococcus sp.
AM4]
Length = 648
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHHTIKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIDVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVKET-----YNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S++++E YN F FK+V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 472 YLSRRLREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP E N I Y GT+G ++ G I L G + V ++H + FS H
Sbjct: 532 KQLAPDEKNSIIFVSYQAEGTLGRQVQRGLREIPLVGEDGRTEVVQVNMEVHTIDGFSGH 591
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + ++ V L P+ VI VHGE K L + + + P N +++
Sbjct: 592 ADRRELISYVARLRPRPERVITVHGEPHKCLDLASSLHKKFNLSTRAPNNLDAI 645
>gi|340053150|emb|CCC47437.1| putative cleavage and polyadenylation specificity factor, fragment
[Trypanosoma vivax Y486]
Length = 584
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 15/222 (6%)
Query: 11 VLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQKVKE 68
VLI F L L YWE +PIY+++ L + Y+ +S + +VK+
Sbjct: 77 VLITHFHLDHCGALPYFW--YWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQ 134
Query: 69 TY----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
+ N F FK + D + GPCV+ A+PGML G SLE+F+ W N I +
Sbjct: 135 QHANHRNPFVFKYIQPLVDTRSFEDNGPCVVLASPGMLQSGISLELFEKWCGDRRNGIII 194
Query: 124 PGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQ-IHQLAFSPHTDGKGIMDLVKFL-SPQ 180
GYC+ GTI ++S I + +G + +R + I ++FS H+DG+ D ++ L Q
Sbjct: 195 AGYCIDGTIAKDVLSKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQ 254
Query: 181 HVILVHGEKPKMATLKERIQSEL---GIKCYDPANNESMCIP 219
HVILVHG M LK ++Q + G+K Y N E++ IP
Sbjct: 255 HVILVHGNAGAMIQLKNKLQQDFADRGVKVYATKNQEAIRIP 296
>gi|256810348|ref|YP_003127717.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus fervens AG86]
gi|256793548|gb|ACV24217.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus fervens
AG86]
Length = 634
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 124/236 (52%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKVLIP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 399 VSETTEKGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 457
Query: 61 WTSQKVK-----ETYNAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S++++ E N F FK V N R +ID+ PC++ AT GMLTGG S+E
Sbjct: 458 YLSKEMRQKIFHEGDNPFLSEVFKRVGSTNERRKVIDSDEPCIILATSGMLTGGPSVEYL 517
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQL-AFSPH 164
KH AP E N I GY GT+G K+ G I + + I + +++ + FS H
Sbjct: 518 KHLAPDEKNAIIFVGYQAEGTLGRKVQRGWKEIPITTRNGKTKSIPINMKVYTIEGFSGH 577
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+D K ++ ++ + SP+ VI+VHGE+ K + ++ + Y P N +++ +
Sbjct: 578 SDRKQLIKYIRRVKPSPEKVIMVHGEESKCLDFADTVRRLFKKQTYVPMNLDAIRV 633
>gi|337284211|ref|YP_004623685.1| mRNA 3'-end processing factor [Pyrococcus yayanosii CH1]
gi|334900145|gb|AEH24413.1| mRNA 3'-end processing factor, putative [Pyrococcus yayanosii CH1]
Length = 648
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHRTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIDVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVKET-----YNAF---DFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S++++E YN F FK V N + +ID+ P ++ A+ GML GG S+E F
Sbjct: 472 YLSKRLREQIFHEGYNPFLNEVFKPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK---IDVRCQIHQL-AFSPH 164
K AP N + Y GT+G ++ +G I + EG K I V +++ + FS H
Sbjct: 532 KQLAPDPKNSMIFVSYQAEGTLGRQVQNGAREIPMVGEGGKTEVIKVNMEVYTIDGFSGH 591
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M+ V + P+ VI VHGE K L I + G+ P N +++
Sbjct: 592 ADRRELMNYVARVKPRPERVITVHGEPQKCLDLATSIHKKFGLSTRAPNNLDTI 645
>gi|397651897|ref|YP_006492478.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
gi|393189488|gb|AFN04186.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
Length = 648
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHQTIRRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIDVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTS-----QKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S Q KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 472 YLSKTLREQIFKEDYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K A + N I Y GT+G ++ SG I + G I V ++H + FS H
Sbjct: 532 KQLASDKRNSIIFVSYQAEGTLGRQVQSGVREIPMIGESGRTEVIKVNMEVHTIDGFSGH 591
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D K +M+ V + P+ VI VHGE K L I + G+ P N +++
Sbjct: 592 ADRKELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHKKFGLSTRAPNNLDTI 645
>gi|156100557|ref|XP_001616006.1| cleavage and polyadenylation specifity factor protein [Plasmodium
vivax Sal-1]
gi|148804880|gb|EDL46279.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium vivax]
Length = 934
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER--MNLRVPIYFSAGLTIQANMYYKMLIS----WT 62
GKVL+P FALGRAQEL ++++++WER ++PI++ + + ++ Y+ I+ +
Sbjct: 287 GKVLLPVFALGRAQELLLIMEEHWERNPQLQKIPIFYISSMATKSLCIYETFINLCGDFV 346
Query: 63 SQKVKETYNAFDFKNVHNFDRSL-------IDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ E N F+FK V + +SL PCV+ A+PGML G S +F AP
Sbjct: 347 RHVLNEGKNPFNFKFV-KYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAP 405
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + L GY + GT+ ++L + + + + RC+ +++FS H+D ++
Sbjct: 406 DKKSGVILTGYTVKGTLADELKTEPEYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIE 465
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 466 MLKCPNVVLVHGDRNELNRLKNKLTEE 492
>gi|18977777|ref|NP_579134.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
gi|18893520|gb|AAL81529.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
Length = 651
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 416 IHQTIRRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIDVPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTS-----QKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S Q KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 475 YLSKTLREQIFKEDYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K A + N I Y GT+G ++ SG I + G I V ++H + FS H
Sbjct: 535 KQLASDKRNSIIFVSYQAEGTLGRQVQSGVREIPMIGESGRTEVIKVNMEVHTIDGFSGH 594
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D K +M+ V + P+ VI VHGE K L I + G+ P N +++
Sbjct: 595 ADRKELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHKKFGLSTRAPNNLDTI 648
>gi|261402298|ref|YP_003246522.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus vulcanius M7]
gi|261369291|gb|ACX72040.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
vulcanius M7]
Length = 634
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKVLIP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 399 VSETTDKGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 457
Query: 61 WTSQKVK-----ETYNAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S++++ E N F FK V N R +ID+ PCV+ AT GMLTGG S+E
Sbjct: 458 YLSKEMRQKIFHEGDNPFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYL 517
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSG---NPTIELEG--TKIDVRCQIHQL-AFSPH 164
KH AP E N I GY GT+G K+ G P + G I + Q++ + FS H
Sbjct: 518 KHLAPDEKNAIIFVGYQAEGTLGRKVQRGWKEIPIVTRNGKTKSIPINLQVYTIEGFSGH 577
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPK 191
+D K ++ V+ L SP+ +I+VHGE+ K
Sbjct: 578 SDRKQLIKYVRRLKPSPEKIIMVHGEESK 606
>gi|156092661|ref|XP_001612477.1| cleavage and polyadenylation specifity factor protein [Plasmodium
vivax Sal-1]
gi|148801279|gb|EDL42684.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium vivax]
Length = 858
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWER--MNLRVPIYFSAGLTIQANMYYKMLIS----WT 62
GKVL+P FALGRAQEL ++++++WER ++PI++ + + ++ Y+ I+ +
Sbjct: 287 GKVLLPVFALGRAQELLLIMEEHWERNPQLQKIPIFYISSMATKSLCIYETFINLCGDFV 346
Query: 63 SQKVKETYNAFDFKNVHNFDRSL-------IDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ E N F+FK V + +SL PCV+ A+PGML G S +F AP
Sbjct: 347 RHVLNEGKNPFNFKFV-KYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAP 405
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + L GY + GT+ ++L + + + + RC+ +++FS H+D ++
Sbjct: 406 DKKSGVILTGYTVKGTLADELKTEPEYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIE 465
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 466 MLKCPNVVLVHGDRNELNRLKNKLTEE 492
>gi|389852761|ref|YP_006354995.1| mRNA 3'-end processing factor [Pyrococcus sp. ST04]
gi|388250067|gb|AFK22920.1| putative mRNA 3'-end processing factor [Pyrococcus sp. ST04]
Length = 651
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H + GGKVLIPA A+GRAQE+ ++L++Y + PIY G+ +A +
Sbjct: 416 IHHTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIDAPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTSQKV-----KETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+++ KE YN F + H S +ID+ P ++ A+ GML GG S+E F
Sbjct: 475 YLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSKEPAIIIASSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK---IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ +G I + EG + I V +H + FS H
Sbjct: 535 KQLAPDPKNAIIFVSYQAEGTLGRQVQNGAREIPMIGEGGRTEVIKVNMDVHTIDGFSGH 594
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M+ V + P+ VI VHGE K L I + GI P N +++
Sbjct: 595 ADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHKKFGISTRAPNNLDTI 648
>gi|332862132|ref|XP_001152447.2| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11,
partial [Pan troglodytes]
Length = 332
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%), Gaps = 3/83 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 87 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 146
Query: 61 WTSQKVKETY---NAFDFKNVHN 80
WT+QK+ +T+ N F FK++ +
Sbjct: 147 WTNQKIHKTFVQRNMFXFKHIES 169
>gi|321264788|ref|XP_003197111.1| cleavage and polyadenylation specificity factor [Cryptococcus
gattii WM276]
gi|317463589|gb|ADV25324.1| Cleavage and polyadenylation specificity factor, putative
[Cryptococcus gattii WM276]
Length = 778
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
V V GG+ L+P + G QEL +LLD+YW E N +P+YF++ L + YK
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQN--IPVYFASSLFQRGMRVYK 306
Query: 57 MLISWTSQKVKETY----NAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + ++ + N FDF+ V + L + GPCV+ ++P ++ G S ++
Sbjct: 307 TYVHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLL 366
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKG 169
+ WAP N + + GY + GT+ L+S IE L+G I R + +++F H D
Sbjct: 367 EEWAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNIPRRLTVKEISFGAHVDYAQ 426
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
++ + QHV+LVHGE +M L+ ++ I + P N E + +
Sbjct: 427 NSKFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTL 480
>gi|405124298|gb|AFR99060.1| endoribonuclease YSH1 [Cryptococcus neoformans var. grubii H99]
Length = 770
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
V V GG+ L+P + G QEL +LLD+YW E N +P+YF++ L + YK
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQN--IPVYFASSLFQRGMRVYK 306
Query: 57 MLISWTSQKVKETY----NAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + ++ + N FDF+ V + L + GPCV+ ++P ++ G S ++
Sbjct: 307 TYVHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLL 366
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKG 169
+ WAP N + + GY + GT+ L+S IE L+G I R + +++F H D
Sbjct: 367 EEWAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNIPRRLTVKEISFGAHVDYAQ 426
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
++ + QHV+LVHGE +M L+ ++ I + P N E + +
Sbjct: 427 NSKFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTL 480
>gi|389585470|dbj|GAB68201.1| cleavage and polyadenylation specifity factor protein, partial
[Plasmodium cynomolgi strain B]
Length = 936
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKMLIS----WT 62
GKVL+P FALGRAQEL ++++++WER ++PI++ + + ++ Y+ I+ +
Sbjct: 287 GKVLLPVFALGRAQELLLIMEEHWERNTQLQKIPIFYISSMATKSLCIYETFINLCGDFV 346
Query: 63 SQKVKETYNAFDFKNVHNFDRSL-------IDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ E N F+FK V + +SL PCV+ A+PGML G S +F AP
Sbjct: 347 RHVLNEGKNPFNFKFV-KYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAP 405
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + L GY + GT+ ++L + + + + RC+ +++FS H+D ++
Sbjct: 406 DKKSGVILTGYTVKGTLADELKTEPEYVLINDKLVKRRCRFEEISFSAHSDFNQTKTFIE 465
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 466 KLKCPNVVLVHGDRNELNRLKNKLTEE 492
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW-ERMNLR-VPIYFSAGLTIQANMYYKML 58
+H +A GG+VL+P FALGRAQEL ++LD+YW + +L + +Y+++ L + Y+
Sbjct: 231 IHSTLANGGRVLMPVFALGRAQELLLILDEYWSQHQDLENIKVYYASDLARKCLAVYQTY 290
Query: 59 ISWTSQKVKETY-----NAFDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
I+ ++ +++ + N F F+ + N + S D P V+ A+PGML G S + +
Sbjct: 291 INMMNENIRKKFRDTNKNPFQFQYIKNIKNLSKFDDFQPSVVVASPGMLQNGVSRALLEK 350
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
WAP N + + L T P+ + I R + +++F+ H D +
Sbjct: 351 WAPDPRNTLIMTEILLEPT-------EIPSQQNPDVLIPRRMTVEEISFAAHVDYEQNSK 403
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELG--------IKCYDPANNESMCI 218
++ ++P+ ++LVHGE M LK + S+ +K Y+P N E + +
Sbjct: 404 FIELVNPKTIVLVHGESNPMGRLKSALLSKYSKYKNTPDEVKVYNPRNCEDLLV 457
>gi|375082947|ref|ZP_09729988.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
gi|374742377|gb|EHR78774.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
Length = 651
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 119/233 (51%), Gaps = 21/233 (9%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
+ + GKVLIPA A+GRAQE+ I L+DY L VPIY G+ +A + +
Sbjct: 418 QTIKRKGKVLIPAMAVGRAQEIMIALEDYARVGGLDVPIYLD-GMIWEATAIHTAYPEYL 476
Query: 63 SQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
S+ ++ E YN F FK V N + + +I++ P ++ A+ GML GG S+E FKH
Sbjct: 477 SKNLRNQIFHEGYNPFLNEIFKPVANANERKDIIESEEPAIIIASSGMLVGGPSVEYFKH 536
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG---NPTIELEGTK---IDVRCQIHQL-AFSPHT 165
AP N + Y GT+G ++ G PT+ EG K I V +IH + FS H
Sbjct: 537 LAPDPRNSLIFVSYQAEGTLGRQVQRGLREIPTVG-EGGKTEVIQVNMEIHTIDGFSGHA 595
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + +M V + P+ VI VHGE K L I + G+ P N +++
Sbjct: 596 DRRELMSYVARVKPRPERVITVHGEPQKCLDLASSIHKKFGLSTRAPNNLDAI 648
>gi|242398880|ref|YP_002994304.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
gi|242265273|gb|ACS89955.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
Length = 648
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVK- 67
GKVLIPA A+GR+QE+ I L+DY VPIY G+ +A + + S+ ++
Sbjct: 421 GKVLIPAMAVGRSQEIMIALEDYARVGGFEVPIYLD-GMIWEATAIHTAYPEYLSKNLRN 479
Query: 68 ----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
E YN F FK V N + + +I++ P ++ A+ GML GG S+E FKH AP
Sbjct: 480 QIFHEGYNPFLNEIFKPVANANERKDIIESEEPAIIIASSGMLVGGPSVEYFKHLAPDPR 539
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK---IDVRCQIHQL-AFSPHTDGKGIMD 172
N + Y GT+G ++ G I + EG K I + +IH + FS H D + +M+
Sbjct: 540 NSLVFVSYQAEGTLGRQVQRGLREIPMIGEGGKTEAIQINMEIHTIDGFSGHADRRELMN 599
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ + P+ VI VHGE K L I + GI P N +++
Sbjct: 600 YISRVRPRPERVITVHGEPQKCLDLASSIHKKFGISTRAPNNLDAI 645
>gi|240103777|ref|YP_002960086.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
gi|239911331|gb|ACS34222.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
Length = 651
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H + GGKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 416 IHHTIKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIDVPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTSQKVKET-----YNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S++++E YN F FK+V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 475 YLSRRLREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K AP N I Y GT+G ++ G I L G + V ++H + FS H
Sbjct: 535 KQLAPDPKNSIIFVSYQAEGTLGRQVQRGLREIPLVGEDGRTEVVQVNMEVHTIDGFSGH 594
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + ++ V L P+ VI VHGE K L + + + P N +++
Sbjct: 595 ADRRELISYVARLRPRPERVITVHGEPHKCLDLASSLHKKFNLSTRAPNNLDAI 648
>gi|58270576|ref|XP_572444.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118056|ref|XP_772409.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819805|sp|P0CM89.1|YSH1_CRYNB RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|338819806|sp|P0CM88.1|YSH1_CRYNJ RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|50255022|gb|EAL17762.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228702|gb|AAW45137.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 773
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
V V GG+ L+P + G QEL +LLD+YW E N +P+YF++ L + YK
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQN--IPVYFASSLFQRGMRVYK 306
Query: 57 MLISWTSQKVKETY----NAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + ++ + N FDF+ V + L + GPCV+ ++P ++ G S ++
Sbjct: 307 TYVHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLL 366
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVRCQIHQLAFSPHTDGKG 169
+ WAP N + + GY + GT+ L+S IE L+G + R + +++F H D
Sbjct: 367 EEWAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGAHVDYAQ 426
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG-----IKCYDPANNESMCI 218
++ + QHV+LVHGE +M L+ ++ I + P N E + +
Sbjct: 427 NSKFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTL 480
>gi|82596170|ref|XP_726151.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii 17XNL]
gi|23481438|gb|EAA17716.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii]
Length = 942
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GKVL+P FALGRAQE+ ++L+++W+R NL ++PI++ + + ++ Y+ I+ S +
Sbjct: 280 GKVLLPVFALGRAQEILLILEEHWDRNPNLQKIPIFYISSMATKSLCIYETYINLCSDFI 339
Query: 67 K----ETYNAFDFKNVHNFDRSLIDAPG-------PCVLFATPGMLTGGFSLEVFKHWAP 115
K E N F+FK V + +SL PCV+ A+PGML G S +F A
Sbjct: 340 KKIVNEGKNPFNFKYVK-YAKSLDSILNYLYQDNYPCVIMASPGMLQSGISKSIFNIIAS 398
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + + GY + GT+ ++L + + + + +CQ Q++FS H+D ++
Sbjct: 399 DKKSGVIITGYTIKGTLADELKTEPEFVTINDKLVKRKCQFEQISFSAHSDFNQTKTFIE 458
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 459 KLKCPNVVLVHGDRNELNRLKNKLIDE 485
>gi|221059687|ref|XP_002260489.1| cleavage and polyadenylation specifity protein [Plasmodium knowlesi
strain H]
gi|193810562|emb|CAQ41756.1| cleavage and polyadenylation specifity protein,putative [Plasmodium
knowlesi strain H]
Length = 938
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 114/207 (55%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKMLIS----WT 62
GKVL+P FALGRAQEL ++++++WE+ ++PI++ + + ++ Y+ I+ +
Sbjct: 287 GKVLLPVFALGRAQELLLIMEEHWEKNTQLQKIPIFYISSMATKSLCIYETFINLCGDFV 346
Query: 63 SQKVKETYNAFDFKNVHNFDRSL-------IDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ E N F+FK V + +SL PCV+ A+PGML G S +F AP
Sbjct: 347 RHVLNEGKNPFNFKYV-KYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAP 405
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + L GY + GT+ ++L + + + + RC+ +++FS H+D ++
Sbjct: 406 DKKSGVILTGYTVKGTLAHELKTEPEYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIE 465
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 466 KLKCPNVVLVHGDRNELNRLKNKLTEE 492
>gi|341581963|ref|YP_004762455.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
gi|340809621|gb|AEK72778.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
Length = 651
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GGKVLIPA A+GRAQE+ ++L++Y L VPIY G+ +A +
Sbjct: 416 IHQTIRRGGKVLIPAMAVGRAQEIMMVLEEYARIGGLEVPIYLD-GMIWEATAIHTAYPE 474
Query: 61 WTSQKVKET-----YNAF---DFKNVHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++E YN F FK V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 475 YLSRHLREQIFHEGYNPFLNPIFKPVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK---IDVRCQIHQL-AFSPH 164
K A N + Y GT+G ++ G I L EG K ++V ++H + FS H
Sbjct: 535 KQLASDPKNSMVFVSYQAEGTLGRQVQRGLREIPLVGEGGKTEVVNVNMEVHTIDGFSGH 594
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + ++ + L P+ VI VHGE K L I + G+ P N +++
Sbjct: 595 ADRRELISYIARLRPRPERVITVHGEAHKCLDLSTSIHKKFGLSTRAPNNLDAI 648
>gi|124809291|ref|XP_001348538.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|23497434|gb|AAN36977.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 876
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLIS-- 60
+ GKVL+P FALGRAQEL ++L+++W++ +PI++ + + ++ Y+ I+
Sbjct: 275 INNKGKVLLPVFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYETFINLC 334
Query: 61 --WTSQKVKETYNAFDFKNV------HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+ + V E N F+FK V + L PCV+ A+PGML G S +F
Sbjct: 335 GEFVKKVVNEGKNPFNFKYVKYAKSLESISSYLYQDNNPCVIMASPGMLQNGISKNIFNI 394
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
A + + + L GY + GT+ ++L + + + + +C+ Q++FS H+D
Sbjct: 395 IASDKKSGVILTGYTVKGTLADELKTEPEFVTINDKVVKRKCRFEQISFSAHSDFNQTKT 454
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSE 202
++ L +V+LVHG+K ++ LK ++ E
Sbjct: 455 FIEKLKCPNVVLVHGDKNELNRLKNKLIEE 484
>gi|70945220|ref|XP_742453.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
chabaudi chabaudi]
gi|56521446|emb|CAH74696.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 564
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 117/207 (56%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GKVL+P FALGRAQE+ ++L+++W+R NL ++PI++ + + ++ Y+ I+ S+ +
Sbjct: 281 GKVLLPVFALGRAQEILLILEEHWDRNPNLQKIPIFYISSMATKSLCIYETYINLCSEFI 340
Query: 67 K----ETYNAFDFKNVHNFDRSLIDAPG-------PCVLFATPGMLTGGFSLEVFKHWAP 115
K E N F+FK V + +SL PCV+ A+PGML G S +F A
Sbjct: 341 KKIVNEGKNPFNFKYV-KYAKSLDSILNYLYQDNYPCVIMASPGMLQSGISKSIFNIIAS 399
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + + GY + GT+ ++L + + + + +CQ Q++FS H+D ++
Sbjct: 400 DKKSGVIITGYTIKGTLADELKTEPEFVTINDKLVKRKCQFEQISFSAHSDFNQTKTFIE 459
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 460 KLKCPNVVLVHGDRNELNRLKNKLIDE 486
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 7 GGGKVLIPAFALGRAQELCILLDDYWER--MNLRVPIYFSAGLTIQANMYYKMLISWTSQ 64
GGG VL+P FA GR EL I+LD+YW + + PIY + L I+ ++ +
Sbjct: 231 GGGNVLLPVFATGRCHELLIILDEYWSKNPQVQQFPIYSTCTLAIKCTHIFQKHFNKLGN 290
Query: 65 KVKETYNAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLIT 122
K + N F F +++ + +++ P V+ A+PG+L G S +++++W E N +
Sbjct: 291 KYHKGENLFKFNHINTKKHLQDILNNQKPKVVMASPGLLQSGHSKQIYEYWCKDEKNQVI 350
Query: 123 LPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHV 182
+ G + GTI ++L+ NP + D++ + Q++FS H D + L PQHV
Sbjct: 351 ITGPAVQGTIAHQLIH-NP-------EPDIKIRPAQISFSAHADYLQTSSFIDSLRPQHV 402
Query: 183 ILVHGEKPKMATLKERIQ---SELGIKCYDPANNESM 216
ILVHG + K L+++I+ ++ K + P N + +
Sbjct: 403 ILVHGTQHKCRDLQKKIEINFKDIVEKVWAPENQKQV 439
>gi|212223311|ref|YP_002306547.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
gi|212008268|gb|ACJ15650.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
Length = 648
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHQTIRRKGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVKET-----YNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++E YN F FK V N + +ID+ P ++ AT GML GG S+E F
Sbjct: 472 YLSRHLREQIFHEGYNPFLNPIFKPVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK---IDVRCQIHQL-AFSPH 164
K AP N + Y GT+G ++ G I L EG K + V ++H + FS H
Sbjct: 532 KQLAPDPKNSMIFVSYQAEGTLGRQVQRGLREIPLVGEGGKTEVVKVNMEVHTIDGFSGH 591
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D + ++ + L P+ +I VHGE K L I + GI P N +++
Sbjct: 592 ADRRELISYIARLRPRPERIITVHGEPHKCLDLSTSIHKKFGISTRAPNNLDAI 645
>gi|68076685|ref|XP_680262.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
berghei strain ANKA]
gi|56501171|emb|CAH99756.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium berghei]
Length = 888
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 115/207 (55%), Gaps = 14/207 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERM-NL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GKVL+P FALGRAQE+ ++L+++W R NL ++PI++ + + ++ Y+ I+ S +
Sbjct: 281 GKVLLPVFALGRAQEILLILEEHWNRNPNLQKIPIFYISSMATKSLCIYETYINLCSDFI 340
Query: 67 K----ETYNAFDFKNVHNFDRSLIDAPG-------PCVLFATPGMLTGGFSLEVFKHWAP 115
K E N F+FK V + +SL PCV+ A+PGML G S +F A
Sbjct: 341 KKIVNEGKNPFNFKYVK-YAKSLDSILNYLYQDNYPCVVMASPGMLQSGISKSIFNIIAS 399
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
+ + + + GY + GT+ ++L + + + + +CQ Q++FS H+D ++
Sbjct: 400 DKKSGVIITGYTIKGTLADELKTEPEFVTINDKLVKRKCQFEQISFSAHSDFNQTKTFIE 459
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSE 202
L +V+LVHG++ ++ LK ++ E
Sbjct: 460 KLKCPNVVLVHGDRNELNRLKNKLIDE 486
>gi|148683101|gb|EDL15048.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Mus musculus]
Length = 207
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I+
Sbjct: 136 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIT 195
Query: 61 WTSQKVKETY 70
WT+QK+++T+
Sbjct: 196 WTNQKIRKTF 205
>gi|146163951|ref|XP_001012725.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145850|gb|EAR92480.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 750
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 15/230 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR---VPIYFSAGLTIQANMYYKM 57
V + V G+ L+P FALGRAQE+ ++L+++W++ + + I+F+ L+ +AN ++
Sbjct: 216 VMRIVKNKGQCLLPVFALGRAQEIVLILEEFWKQNSSELADIKIHFTQNLSKKANQIFQY 275
Query: 58 LISWTSQKV-KETYNAFDF----KNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
S + + K N F+ N+ D ID PCV+ ++P L G S + +
Sbjct: 276 YKSMMADPIRKNQLNPFNLHYAPNNITKHDE--IDENKPCVILSSPFNLQSGISRTIIER 333
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMS--GNPTIE--LEGTKIDVRCQIHQLAFSPHTDGK 168
N + L G+C T+ ++ + + TI ++G KI + ++FS H D
Sbjct: 334 ICSKPQNGVILTGFCPENTLSKEIQNEKQDKTINSIIDGRKIPFNMSVKNISFSAHADLN 393
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATL-KERIQSELGIKCYDPANNESMC 217
+ ++ + PQHVILVHG K+ L KE +++ +G++ + P N + +C
Sbjct: 394 QTTNFIRAIEPQHVILVHGSSIKIKELQKELMKTFVGLQVHAPNNQQKIC 443
>gi|333910182|ref|YP_004483915.1| KH-domain/beta-lactamase-domain-containing protein [Methanotorris
igneus Kol 5]
gi|333750771|gb|AEF95850.1| KH-domain/beta-lactamase-domain protein [Methanotorris igneus Kol
5]
Length = 635
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + + GGKVLIP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 VSETLQRGGKVLIPVFGVGRAQELMLVLEEGYNQGVFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N R +ID+ PC++ AT GMLTGG S+E F
Sbjct: 459 YLSKVIRNRIFHEGDNPFLSEVFKRVGSTNERRRVIDSDEPCIILATSGMLTGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQL-AFSPH 164
K+ AP E N + GY GT+G K+ G I + + I ++ +IH L FS H
Sbjct: 519 KNLAPDEKNTLVFVGYQAEGTLGRKVQKGWKEIPITTKNGKTKSIPIKMEIHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
+D K ++ ++ L P+ ++++HGE K
Sbjct: 579 SDRKQLIKYLRKLKPMPERILMIHGEANK 607
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 48/258 (18%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG+VL+P FALGRAQEL ++L++YWE + PIY+++ L + Y+ I +
Sbjct: 245 GGRVLMPVFALGRAQELLLILEEYWEVHERYRQYPIYYASSLARRCMSVYQTYIHAMNDN 304
Query: 66 VKETY---------------------NAFDFK---NVHNFDRSLIDAPGPCVLFATPGML 101
+K + N F+ + ++ + DR D G CV+ A PGM+
Sbjct: 305 IKALFRSKMAAIGEAAGKDGQVIGGTNPFEMRWVRSLKSLDR--FDDVGGCVMLAAPGMM 362
Query: 102 TGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI---------------ELE 146
G S E+ + W P N + L GY + GT+ +++ I E +
Sbjct: 363 QNGVSRELLERWCPDPKNGVILTGYSVEGTLAKSILNEPTEIQAFKKEHTSRRSGREEAD 422
Query: 147 GTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL--- 203
I RC I +L+F+ H D ++ + + +ILVHGE M LK + S+
Sbjct: 423 RVMIPRRCSIDELSFAAHVDYGQNSSFIEEVGAKVIILVHGETNAMGRLKSALLSKYHDR 482
Query: 204 --GIKCYDPANNESMCIP 219
+ Y+P N E + IP
Sbjct: 483 KDKPRIYNPKNCEELNIP 500
>gi|296109857|ref|YP_003616806.1| KH-domain/beta-lactamase-domain protein [methanocaldococcus
infernus ME]
gi|295434671|gb|ADG13842.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
infernus ME]
Length = 631
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 19/224 (8%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQ 64
+ GGK+LIP F +GRAQEL ++L++ + + P+Y G+ +A + + S+
Sbjct: 400 IEKGGKILIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPEYLSK 458
Query: 65 KVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ E N F F+ V N + R +ID PCV+ AT GMLTGG SLE FK+ A
Sbjct: 459 DMRRKIFQEGDNPFLSDVFQRVRNTNDRRRIIDDSEPCVILATSGMLTGGPSLEYFKNLA 518
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSG---NPTIELEG--TKIDVRCQIHQL-AFSPHTDGK 168
P E N I GY GT+G K+ G P + G I + ++ + FS H+D K
Sbjct: 519 PDEKNAIIFVGYQAEGTLGRKVQKGWKEIPIVTKNGKTKSIPINMGVYTVEGFSGHSDRK 578
Query: 169 GIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++ V+ + SP+ +I+VHGE+ K + + Y P
Sbjct: 579 QLIRYVRKVKPSPEKIIMVHGEESKCLDFSSTVNRLFKKETYAP 622
>gi|315231930|ref|YP_004072366.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
gi|315184958|gb|ADT85143.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
Length = 648
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 21/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+H+ + GKVLIPA A+GRAQE+ ++L++Y + VPIY G+ +A +
Sbjct: 413 IHQTIKRKGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLD-GMIWEATAIHTAYPE 471
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E YN F FK V N + +ID+ P ++ A+ GML GG S+E F
Sbjct: 472 YLSKHLRDQIFHEGYNPFLNEIFKPVANSKERQDIIDSEEPAIIIASSGMLVGGPSVEYF 531
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSG---NPTIELEGTK---IDVRCQIHQL-AFSP 163
K AP N I Y GT+G ++ G PTI EG + I V ++H + FS
Sbjct: 532 KQLAPDPRNSIIFVSYQAEGTLGRQVQRGLKEIPTIG-EGGRTEVIRVNMEVHTIDGFSG 590
Query: 164 HTDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H D + +M V + P+ VI VHGE K L + I P N +++
Sbjct: 591 HADRRELMSYVAKVRPRPERVITVHGEPQKCLDLASSLHKRFSISTRAPNNLDAI 645
>gi|374636367|ref|ZP_09707940.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
gi|373559249|gb|EHP85554.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
Length = 635
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 19/206 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + + GGKVLIP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 VSETLQRGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N R +ID PC++ AT GMLTGG S+E F
Sbjct: 459 YLSKVIRNRIFHEGDNPFLSEVFKRVGSTNERRRVIDGDEPCIILATSGMLTGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQL-AFSPH 164
K+ AP E N + GY GT+G K+ G I + + I ++ IH L FS H
Sbjct: 519 KNLAPDEKNTLVFVGYQAEGTLGRKVQKGWKEIPITTKNGKTKSIPIKMDIHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGE 188
+D K ++ ++ L P+ ++++HGE
Sbjct: 579 SDRKQLIKYLRKLKPMPERILMIHGE 604
>gi|222445335|ref|ZP_03607850.1| hypothetical protein METSMIALI_00963 [Methanobrevibacter smithii
DSM 2375]
gi|261350104|ref|ZP_05975521.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
gi|222434900|gb|EEE42065.1| arCOG00543 universal archaeal KH-domain/beta-lactamase-domain
protein [Methanobrevibacter smithii DSM 2375]
gi|288860890|gb|EFC93188.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
Length = 636
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 124/236 (52%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVL+P FA+GRAQEL ++L++Y M VPIY G+ +A +
Sbjct: 401 IYKTLKRGGKVLVPVFAVGRAQELMVVLEEYMRHGMIDEVPIYID-GMIWEATAIHTARP 459
Query: 60 SWTSQKVKETY-----NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ S+ +++ N F F V N D + ++++ P ++ +T GMLTGG S+E
Sbjct: 460 EYLSKDLRDQIFHMGRNPFISDMFNKVQNLDQRKDIVESNSPAIILSTSGMLTGGNSVEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE---GTKI-DVRCQIHQL-AFSPH 164
FK + N + GY G++G ++ G + LE TK+ +V+ +I + FS H
Sbjct: 520 FKWLCEDDRNTLIFVGYQSEGSLGRRIQKGWKEVPLEEDNKTKVFNVKMEIKTINGFSGH 579
Query: 165 TDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ + +MD VK L+P+ VI HG+ K L I I+ P N +S+ I
Sbjct: 580 SNRRQLMDYVKRLNPRPDKVITCHGDPYKTTDLASSIHRSYKIETKSPVNLDSVRI 635
>gi|332799023|ref|YP_004460522.1| beta-lactamase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696758|gb|AEE91215.1| beta-lactamase domain protein [Tepidanaerobacter acetatoxydans Re1]
Length = 831
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKM-- 57
+++ + GGKVL+PAFALGRAQE+ ++L R L PIY G+ YK+
Sbjct: 217 INEVIINGGKVLVPAFALGRAQEVILILKKAMNRGQLLSCPIYVD-GMVKDICRIYKLNP 275
Query: 58 --LISWTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L S ++KV + F NV F + ++++ PCV+ A+ GMLTGG S
Sbjct: 276 NYLRSNLAKKVFRGVDIFYDDNVSPVANPEFRKEILESKNPCVIIASSGMLTGGPSQMYA 335
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMS-----------GNPTIELEGTKIDVRCQIHQL 159
+ A +E NLI + GY + G L+ + TI+L +I V+C++ +
Sbjct: 336 QSLATNENNLIAVTGYQDEESPGKDLLKIIETDDDADKKQDRTIKLGEREISVKCRVGKF 395
Query: 160 AFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
S H D I+++ L P+ + LVHG + +L + IQ ++ Y P N E I
Sbjct: 396 GLSAHADKMEILNIANNLYPRRIFLVHGNPEAINSLGKEIQKDINGFIYAPRNGEQYEI 454
>gi|438002123|ref|YP_007271866.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
gi|432178917|emb|CCP25890.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
Length = 469
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKM-- 57
+++ + GGKVL+PAFALGRAQE+ ++L R L PIY G+ YK+
Sbjct: 217 INEVIINGGKVLVPAFALGRAQEVILILKKAMNRGQLLSCPIYVD-GMVKDICRIYKLNP 275
Query: 58 --LISWTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L S ++KV + F NV F + ++++ PCV+ A+ GMLTGG S
Sbjct: 276 NYLRSNLAKKVFRGVDIFYDDNVSPVANPEFRKEILESKNPCVIIASSGMLTGGPSQMYA 335
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMS-----------GNPTIELEGTKIDVRCQIHQL 159
+ A +E NLI + GY + G L+ + TI+L +I V+C++ +
Sbjct: 336 QSLATNENNLIAVTGYQDEESPGKDLLKIIETDDDADKKQDRTIKLGEREISVKCRVGKF 395
Query: 160 AFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
S H D I+++ L P+ + LVHG + +L + IQ ++ Y P N E I
Sbjct: 396 GLSAHADKMEILNIANNLYPRRIFLVHGNPEAINSLGKEIQKDINGFIYAPRNGEQYEI 454
>gi|332526357|ref|ZP_08402483.1| metallo-beta-lactamase family protein [Rubrivivax benzoatilyticus
JA2]
gi|332110493|gb|EGJ10816.1| metallo-beta-lactamase family protein [Rubrivivax benzoatilyticus
JA2]
Length = 451
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
V + V GG VL+P FA+GRAQ L ++L + +PI+ + + +QA Y+
Sbjct: 226 VRETVRRGGSVLMPTFAVGRAQALMVVLHRLKRAGQIPKDLPIFLDSPMAVQATELYRRF 285
Query: 59 ISWTSQKVKETYNAFD-FKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K E A + + V +S L PCV+ + GM TGG L K AP
Sbjct: 286 AKVLRVKPAELKAACEGVRMVETPQQSMRLTSHRFPCVILSASGMATGGRVLHHLKAMAP 345
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
S + + PG+ + G+ G +L++G +++ G + VRC++ L FS H D +MD +
Sbjct: 346 SPQHHVVFPGFQVGGSRGARLVAGATEVKIHGEYVPVRCEVSHLEGFSGHADSDELMDWL 405
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ +P+ +VHGE L+ RI+ ELG P + E + +
Sbjct: 406 RTTPKAPRQTFVVHGEPDAADALRVRIRDELGWAARVPQHGEQVSV 451
>gi|393794892|ref|ZP_10378256.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 658
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 422 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMVEAPVFTEGMISEASAIHEAYPE 481
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 482 YLARELKQKILETDDNPFDSEYFTNIEHADAREEPMRDNSPCIILATSGMLEGGPVLEYF 541
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + N + Y + GT+G +++ G+ + + G + + + C + +L FS H
Sbjct: 542 KNIAPDKKNKVLFVSYQVNGTMGRRVLDGSKQVTMLGKEGKVEVVTINCSVEKLDGFSGH 601
Query: 165 TDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P + V++ HGE+ K L I+ + + P E++
Sbjct: 602 SDYNQLMSFVQRLRPKLRRVLVNHGERRKSENLAMNIRRMFRVPAHYPQVQEAI 655
>gi|329766104|ref|ZP_08257663.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137375|gb|EGG41652.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 645
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 409 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMVEAPVFTEGMISEASAIHEAYPE 468
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 469 YLARELKQKILETDDNPFDSEYFTNIEHADAREEPMRDNSPCIILATSGMLEGGPVLEYF 528
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + N + Y + GT+G +++ G+ + + G + + + C + +L FS H
Sbjct: 529 KNIAPDKKNKVLFVSYQVNGTMGRRVLDGSKQVTMLGKEGKVEVVTINCSVEKLDGFSGH 588
Query: 165 TDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P+ V++ HGE+ K L I+ + + P E++
Sbjct: 589 SDYNQLMSFVQRLRPKLRRVLVNHGERRKSENLAMNIRRMFRVPAHYPQVQEAI 642
>gi|256810164|ref|YP_003127533.1| beta-lactamase [Methanocaldococcus fervens AG86]
gi|256793364|gb|ACV24033.1| beta-lactamase domain protein [Methanocaldococcus fervens AG86]
Length = 421
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 6/222 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GRAQE+ +++++Y L+ VPIY + G I A Y I
Sbjct: 202 IAETIENGGKVIIPVFAIGRAQEILLIINNYMRSGKLKEVPIY-TDGALIHATAVYLSYI 260
Query: 60 SWTSQKVKETY-NAFD-FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+W + K+K N + F V D SL+ PC++ +T GM+ GG L+ K +
Sbjct: 261 NWLNPKIKNMVENRINPFGVVKKADESLVFNKEPCIIVSTSGMVQGGPVLKYLKLLKDPK 320
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
LI L GY GT+G +L G I+ KI VR ++ ++ FS H D ++ +K +
Sbjct: 321 NKLI-LTGYQAEGTLGRELEEGAKEIQPFKNKIPVRGKVVKIEFSAHGDYNSLVRYIKKI 379
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+ I++HGE+ + + I L I Y P + I
Sbjct: 380 PKPEKAIVMHGERYQSLSFAMTIWKTLKIPTYVPVKGTILPI 421
>gi|340345702|ref|ZP_08668834.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520843|gb|EGP94566.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 645
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 409 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMVEAPVFTEGMISEASAIHEAYPE 468
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 469 YLARELKQKILETDDNPFDSEYFTNIEHADTREEPMRDNSPCIILATSGMLEGGPVLEYF 528
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + N + Y + GT+G +++ G+ + + G + + + C + +L FS H
Sbjct: 529 KNIAPDKKNKVLFVSYQVNGTMGRRVLDGSKQVTMLGKEGKVEVVTINCSVEKLDGFSGH 588
Query: 165 TDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P+ V++ HGE+ K L I+ + + P E++
Sbjct: 589 SDYNQLMSFVQRLRPKLRRVLVNHGERRKSENLAMNIRRMFRVPAHYPQVQEAI 642
>gi|383757173|ref|YP_005436158.1| putative RNA modifying enzyme [Rubrivivax gelatinosus IL144]
gi|381377842|dbj|BAL94659.1| putative RNA modifying enzyme [Rubrivivax gelatinosus IL144]
Length = 451
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
V + V GG VL+P FA+GRAQ L ++L + +PI+ + + +QA Y+
Sbjct: 226 VRETVRRGGSVLMPTFAVGRAQALMVVLHRLKRAGEIPRDLPIFLDSPMAVQATELYRRF 285
Query: 59 ISWTSQKVKETYNAFD-FKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K E A + + V +S L PCV+ + GM TGG L K AP
Sbjct: 286 AKVLRVKPAELKAACEGVRMVETPQQSIRLTSHRFPCVILSASGMATGGRVLHHLKAMAP 345
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
S + + PG+ + G+ G ++++G +++ G + VRC++ L FS H D +MD +
Sbjct: 346 SPQHHVVFPGFQVGGSRGARMVAGATEVKIHGEYVPVRCEVSHLEGFSGHADSDELMDWL 405
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ +P+ +VHGE L+ RI+ ELG P + E + +
Sbjct: 406 RTTPKAPRQTFVVHGEPDAADALRVRIRDELGWAARVPQHGEQVSV 451
>gi|15668334|ref|NP_247130.1| putative mRNA 3'-end processing factor 3 [Methanocaldococcus
jannaschii DSM 2661]
gi|2495836|sp|Q57626.1|Y162_METJA RecName: Full=Uncharacterized protein MJ0162
gi|1590919|gb|AAB98146.1| putative mRNA 3'-end processing factor 3 [Methanocaldococcus
jannaschii DSM 2661]
Length = 421
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GRAQE+ +++++Y LR VPIY L I A Y I
Sbjct: 202 ISETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLRDVPIYTDGSL-IHATAVYMSYI 260
Query: 60 SWTSQKVKETY-NAFD-FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+W + K+K N + F + D SL+ PC++ +T GM+ GG L+ K +
Sbjct: 261 NWLNPKIKNMVENRINPFGEIKKADESLVFNKEPCIIVSTSGMVQGGPVLKYLKLLKDPK 320
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
LI L GY GT+G +L G I+ KI +R ++ ++ FS H D ++ +K +
Sbjct: 321 NKLI-LTGYQAEGTLGRELEEGAKEIQPFKNKIPIRGKVVKIEFSAHGDYNSLVRYIKKI 379
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+ I++HGE+ + + I L I + P + I
Sbjct: 380 PKPEKAIVMHGERYQSLSFAMTIWKTLKIPTFVPVRGTILPI 421
>gi|288930974|ref|YP_003435034.1| RNA-metabolising metallo-beta-lactamase [Ferroglobus placidus DSM
10642]
gi|288893222|gb|ADC64759.1| RNA-metabolising metallo-beta-lactamase [Ferroglobus placidus DSM
10642]
Length = 617
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + GGKVLIP FA+GRAQE+ +L + R +RV +Y L + YK S
Sbjct: 217 ISDTIKAGGKVLIPVFAVGRAQEVLYVLRNL--RDKIRVKVYLDTPLGSRVTDIYK---S 271
Query: 61 WTSQKVKETYNAF------------DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLE 108
+++ KE Y F ++ +N R L + PC++ + GML GG L
Sbjct: 272 YSNMLRKEFYELFLRGKNPIEFEGLEYVTTYNRSRELAKSNEPCIILSASGMLEGGRVLN 331
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDG 167
+ E + + GY GT+G +++ GN + + G ++DVRC + + AFS H D
Sbjct: 332 HLPYILQDENSTVLFVGYQAEGTLGRQIVDGNKLVYVNGDEVDVRCNVVNVSAFSAHADE 391
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERI 199
G++ V+ + P+ + +VHGE+ L R+
Sbjct: 392 DGLVGFVEGMDYYPRRIYIVHGEEEAARNLLARL 425
>gi|407465689|ref|YP_006776571.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407048877|gb|AFS83629.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 646
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 410 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMVEAPVFTEGMISEASAIHESYPE 469
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 470 YLARELKQKILETDDNPFDSEYFTNIEHADAREEPMRDNSPCIILATSGMLEGGPVLEYF 529
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + N + Y + GT+G +++ G+ + G + + + C + +L FS H
Sbjct: 530 KNIAPDKKNKVLFVSYQVNGTLGRRVLDGSKQATMLGKEGKVEVVSINCGVEKLDGFSGH 589
Query: 165 TDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P + V++ HGE+ K L I+ + + P E++
Sbjct: 590 SDYNQLMSFVQRLRPKLRRVLVNHGERKKSENLAMNIRRMYKVPAHYPQVQEAI 643
>gi|284161558|ref|YP_003400181.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
gi|284011555|gb|ADB57508.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
Length = 631
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 21/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V++ ++ GGKVLIPAFA+GR+QE+ I+L++ + VP+Y G+ +A +
Sbjct: 396 VNETISKGGKVLIPAFAVGRSQEVMIVLEEAIRTKKIDEVPVYID-GMIYEATAIHTAYP 454
Query: 60 SWTSQKVK-----ETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + ++ + N F ++ D + +ID+ PCV+ +T GML GG +E
Sbjct: 455 EYLNAHLRDLIFHQGINPFISESFVRVDSPSKRQEVIDSSEPCVIISTSGMLNGGPVMEY 514
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL------EGTKIDVRCQIHQLAFSP 163
F+ A E N I GY GT+G ++ G + E K+++R + FS
Sbjct: 515 FRALAGDEKNTIVFVGYQAEGTLGRRIQKGWKEVPFTVDGRREVVKVNMRVETVD-GFSG 573
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + +M+ VK LS P+ +I VHGE+ K L I I+ P N E++
Sbjct: 574 HSDRRQLMNYVKALSDKPEKIITVHGEESKCIDLASSIYKTYKIETRAPMNLETI 628
>gi|385305954|gb|EIF49896.1| mrna cleavage and polyadenylation specificity factor complex
subunit ysh1 [Dekkera bruxellensis AWRI1499]
Length = 295
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H + GG+ L+P FALGRAQE+ ++LD+YW+R VPIY+++ L + Y+
Sbjct: 141 IHSTLQQGGRCLLPVFALGRAQEILLILDEYWQRHKDLQNVPIYYASSLAKKCMAVYERY 200
Query: 59 ISWTSQKVKETY-----NAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
I+ + +++ + N F FK NV + DR ID PCV+ A+PGML G S ++
Sbjct: 201 INMMNDSIRKKFTETNENPFHFKYIKNVAHADR--IDDLNPCVMIASPGMLQNGVSRQLL 258
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMS 138
+ W P N + + GY + GT+ KL++
Sbjct: 259 EKWCPDPRNTVIMTGYSVDGTMAKKLLT 286
>gi|148643098|ref|YP_001273611.1| metal-dependent RNase [Methanobrevibacter smithii ATCC 35061]
gi|148552115|gb|ABQ87243.1| predicted metal-dependent RNase [Methanobrevibacter smithii ATCC
35061]
Length = 636
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVL+P FA+GRAQEL ++L++Y M VPIY G+ +A +
Sbjct: 401 IYKTLKRGGKVLVPVFAVGRAQELMVVLEEYMRHGMIDEVPIYID-GMIWEATAIHTARP 459
Query: 60 SWTSQKVKETY-----NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ S+ +++ N F F V N D + ++++ P ++ +T GMLT G S+E
Sbjct: 460 EYLSKDLRDQIFHMGRNPFISDMFNKVQNLDQRKDIVESNSPAIILSTSGMLTRGNSVEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE---GTKI-DVRCQIHQL-AFSPH 164
FK + N + GY G++G ++ G + LE TK+ +V+ +I + FS H
Sbjct: 520 FKWLCEDDRNTLIFVGYQSEGSLGRRIQKGWKEVPLEEDNKTKVFNVKMEIKTINGFSGH 579
Query: 165 TDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ + +MD VK L+P+ VI HG+ K L I I+ P N +S+ I
Sbjct: 580 SNRRQLMDYVKRLNPRPDKVITCHGDPYKTTDLASSIHRSYKIETKSPVNLDSVRI 635
>gi|158321392|ref|YP_001513899.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus oremlandii
OhILAs]
gi|158141591|gb|ABW19903.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus oremlandii
OhILAs]
Length = 546
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 108/227 (47%), Gaps = 17/227 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN-----LRVPIYFSAGLTIQANMYY 55
++K V GG VLIP+FA+GR QEL L Y+E +RVPIY + + I A +
Sbjct: 233 INKTVLRGGTVLIPSFAVGRTQELIYELKQYYENNKELEQFMRVPIYIDSPMAISATQIF 292
Query: 56 KMLISWTSQKVKETY----NAFDFKN---VHNFDRS--LIDAPGPCVLFATPGMLTGGFS 106
K + KE N DF+N V ++ S L ++ P V+ + GM T G
Sbjct: 293 KRNSYAFNDTAKELILSGDNPLDFENLYFVRDYKESMALNNSDFPKVIISASGMCTAGRI 352
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHT 165
KH N + GY GT+G L G ++++ G I V +IH + FS H
Sbjct: 353 RHHLKHNLWKAKNSVVFVGYQAVGTLGRILKDGATSVKILGENIAVLAEIHSIEGFSGHI 412
Query: 166 DGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
D GI+D ++ P+ + LVHGE+ ++TL E I I P
Sbjct: 413 DQPGILDWLQGFKKKPKKIFLVHGEEDSLSTLSELINERYNIPTVIP 459
>gi|170290968|ref|YP_001737784.1| beta-lactamase domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175048|gb|ACB08101.1| beta-lactamase domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 432
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ +A GG +IP FALGRAQE+ + L + E L+ VPI F G+ + + YY
Sbjct: 205 IRNVIASGGVTIIPTFALGRAQEVLLTLISHMESGVLQEVPI-FVDGMIREISKYYNAYW 263
Query: 60 SWT----SQKVKETYNA-FDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
SW + ++E+ FD + + L++ P ++ T GML GG L KH
Sbjct: 264 SWLRPELQRMIRESKRGLFDHRAIEEVRNREELLEISEPFIIVTTSGMLQGGPVLTYLKH 323
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD 172
+ NLI L GY + GT G L+ G I + I+V+ + FS H D +++
Sbjct: 324 FGTKRGNLIYLTGYQVRGTRGRMLLDGIRQIPMPDGIIEVKSDVKFADFSAHADQPNLIN 383
Query: 173 LVKFLSPQ---HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ ++ + VILVHGE K+ L+ ++++ GI+ Y P E + I
Sbjct: 384 FITKVAGRGLKEVILVHGEPDKLIQLRRKLEAR-GIRAYIPYEGEVLRI 431
>gi|386875398|ref|ZP_10117572.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
gi|386806797|gb|EIJ66242.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
Length = 646
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 410 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMIEAPVFTEGMISEASAIHESYPE 469
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 470 YLARELKQKILETDDNPFDSEYFTNIEHGDAREEPMRDNSPCIILATSGMLEGGPVLEYF 529
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + N + Y + GT+G +++ G+ + G + + + C + +L FS H
Sbjct: 530 KNIAPDKKNKVLFVSYQVNGTLGRRVLDGSKQATMLGKEGKVEVVSINCGVEKLDGFSGH 589
Query: 165 TDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P + V++ HGE+ K L I+ + + P E++
Sbjct: 590 SDYNQLMSFVQRLRPKLRRVLVNHGERKKSENLAMNIRRMYKVPAHYPQIQEAI 643
>gi|118576728|ref|YP_876471.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
gi|118195249|gb|ABK78167.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
Length = 645
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ ++
Sbjct: 409 VNGALADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMAEAPVFTEGMISEASAIHEAHPE 468
Query: 58 -LISWTSQKVKETY-NAFD---FKNVHNFD---RSLIDAPGPCVLFATPGMLTGGFSLEV 109
L QK+ ET N FD F NV + D +L D PC++ AT GML GG LE
Sbjct: 469 YLARELKQKILETDDNPFDSEYFTNVEHADGRDEALRDG-SPCIILATSGMLEGGPVLEY 527
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDV---RCQIHQL-AFSP 163
FK AP + N I Y + GT+G +++ G + L G KI+V C++ +L FS
Sbjct: 528 FKSIAPHKQNKILFVSYQVNGTLGRRVLDGARQVPLMNRGGKIEVVNIECRMEKLDGFSG 587
Query: 164 HTDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + V+ L P + V++ HGE+ K L ++ I + P ES+
Sbjct: 588 HSDYNQLTGFVQKLRPKLRRVLVNHGERRKSENLALAVRRMFRIPAHYPQIQESI 642
>gi|334127672|ref|ZP_08501577.1| metallo-beta-lactamase [Centipeda periodontii DSM 2778]
gi|333388985|gb|EGK60152.1| metallo-beta-lactamase [Centipeda periodontii DSM 2778]
Length = 555
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYY---------K 56
GG V+IP+FA+GR Q L + W+ R++ +PI + L IQA + +
Sbjct: 257 GGNVIIPSFAVGRTQTLLYYFYNLWKAGRLDGDIPIIIDSPLAIQATRVFLKNYEDFDEE 316
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ + Q ++ R+L A G ++ + GM G L KH W
Sbjct: 317 TIAFFGEQGTIPSFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 376
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P L GY G++G +L+ G + + G +I V+ QI L FS H D + I+D
Sbjct: 377 PESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIQVLEGFSAHADAEQIVDW 434
Query: 174 VKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ ++ P V LVHGE LKERIQ ELG++ Y P +++ I
Sbjct: 435 MRSITAPRPAKVFLVHGEGQAQEALKERIQEELGLEVYAPFLGDTVTI 482
>gi|84489102|ref|YP_447334.1| exonuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372421|gb|ABC56691.1| predicted exonuclease [Methanosphaera stadtmanae DSM 3091]
Length = 635
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 19/233 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++ + GGK+LIP FA+GRAQE+ I+L+++ R L +VP+Y G+ +A +
Sbjct: 400 IYDTIQKGGKILIPVFAVGRAQEIMIVLEEFINRGILGKVPVYLD-GMIWEATAIHTAHP 458
Query: 60 SWTSQKV-KETYNAFD-------FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ S ++ K+ ++A + F V N + R L+++ PCV+ +T GMLTGG S+E
Sbjct: 459 EFLSNELQKQIFHAGENPFTSDVFNKVTNNEQRRKLLESNEPCVILSTSGMLTGGNSVEY 518
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI----DVRCQIHQL-AFSPH 164
FK E N I GY G++G ++ G + LE + + ++ + FS H
Sbjct: 519 FKELCEDEKNRIIFVGYQSEGSLGRRIQKGFDEVPLEKDGVTQLFHINIEVTTIDGFSGH 578
Query: 165 TDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
+D K +M+ V+ LSP+ +++ HG+ K L I I+ P N E+
Sbjct: 579 SDRKQLMEYVRKLSPKPDKILVCHGDAYKALDLASSIYRTYKIETKTPLNLET 631
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 20/202 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG VL+P FALGRAQEL ++LD+YW VP+Y+++ L + Y+
Sbjct: 192 VHTIVKRGGHVLLPVFALGRAQELLLILDEYWAAHPELHGVPVYYASNLARKCMAVYQTY 251
Query: 59 ISWTSQKVKETY----NAFDFKNVHN------FDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I + ++ + N F FK++ + ++R + +A GPCV+ A+PG ++ G S E
Sbjct: 252 IHTMNSHIRSRFARKDNPFVFKHISHLPATRGWERKIAEA-GPCVILASPGFMSSGPSRE 310
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE------LEGTK-IDVRCQIHQLAF 161
+ + WAP N + + GY + GT+ ++ I+ +G K I R + ++F
Sbjct: 311 LLELWAPDAKNGVIITGYSIEGTMARDIILEPDEIKPYRSDGPDGNKMIPRRLSVEYISF 370
Query: 162 SPHTDGKGIMDLVKFLSPQHVI 183
S H DG + ++ + +HV+
Sbjct: 371 SAHVDGPQNTEFIEAVGARHVV 392
>gi|289191606|ref|YP_003457547.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
gi|288938056|gb|ADC68811.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
Length = 421
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GRAQE+ +++++Y L+ VPIY L I A Y I
Sbjct: 202 IAETIENGGKVIIPVFAIGRAQEILLIINNYMRSGGLKEVPIYTDGSL-IHATAVYMSYI 260
Query: 60 SWTSQKVKETY-NAFD-FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+W + K+K N + F + D +L+ PC++ +T GM+ GG L+ K +
Sbjct: 261 NWLNPKIKNMVENRINPFGEIKKADENLVFNKEPCIIVSTSGMVQGGPVLKYLKLLKDPK 320
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
LI L GY GT+G +L G I+ KI +R ++ ++ FS H D ++ +K +
Sbjct: 321 NKLI-LTGYQAEGTLGRELEEGAKEIQPFKNKIPIRGKVVKIEFSAHGDYNSLVRYIKKI 379
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+ I++HGE+ + + I L I + P + I
Sbjct: 380 PKPEKAIVMHGERYQSLSFAMTIWKTLKIPTFVPVRGTILPI 421
>gi|261403765|ref|YP_003247989.1| beta-lactamase [Methanocaldococcus vulcanius M7]
gi|261370758|gb|ACX73507.1| beta-lactamase domain protein [Methanocaldococcus vulcanius M7]
Length = 421
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GRAQE+ ++L++Y NL VPIY + G I A Y
Sbjct: 202 IAETIENGGKVIIPVFAIGRAQEILLILNNYMRSGNLTEVPIY-TDGSLIHATAVYMSYT 260
Query: 60 SWTSQKVKETY-NAFD-FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+W + K+K N + F + D +L+ PC++ +T GM+ GG L+ K +
Sbjct: 261 NWLNPKIKNMIENGINPFGEIKKADDNLVFNKEPCIIVSTSGMVQGGPILKYLKLLKDPK 320
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
LI L GY GTIG +L G I+ KI + ++ ++ FS H D ++ +K +
Sbjct: 321 NKLI-LTGYQAEGTIGRELEEGAEEIQPFKNKIPINGKVVKIEFSAHGDYNSLVRYIKKI 379
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+ I++HGE+ + + I L I + P + I
Sbjct: 380 PKPEKAIVMHGERYQALSFAMTIWKTLKIPTFVPVKGTVLPI 421
>gi|312792978|ref|YP_004025901.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180118|gb|ADQ40288.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 822
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
V + V+ GGKVLIPAFA+GRAQE+ ++L +Y ++ + ++ + T
Sbjct: 214 VAEVVSQGGKVLIPAFAIGRAQEIILILRNYMKKRKVSFNVFIDGMVREVIRVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + + N K ++ + PCV+ ++ GMLTGG S+
Sbjct: 274 LSSRYYKRVLKGEEIFLADNINVVSDKKQR---EEIVSSSDPCVIISSSGMLTGGPSVFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ S+ LI + GY G KL+ IEL G + +V+C++ + S
Sbjct: 331 AEKIVQSQNALIAITGYQDEEAPGRKLLELAELPENERKIELNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H+D I+ + L P+ VI HG + ++ + + ELG P N E I
Sbjct: 391 HSDRDRILGFLATLKPRTVIFAHGSEDAISQISDMAVKELGANIIVPQNGEINSI 445
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 8/146 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 225 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 284
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 285 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG 139
+ N + + GYC+ GT+ L+ G
Sbjct: 344 CTDKRNGVIIAGYCVEGTLAKILVHG 369
>gi|357057533|ref|ZP_09118392.1| hypothetical protein HMPREF9334_00108 [Selenomonas infelix ATCC
43532]
gi|355375192|gb|EHG22481.1| hypothetical protein HMPREF9334_00108 [Selenomonas infelix ATCC
43532]
Length = 536
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYY---------K 56
GG V+IP+FA+GR Q L + W+ R++ +PI + L IQA + +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYNLWKAGRLDGDIPIIIDSPLAIQATRVFLKNYEDFDEE 297
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ + Q + R+L A G ++ + GM G L KH W
Sbjct: 298 TIAFFGEQGTIPAFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P + I GY G++G +L+ G + + G +I V+ QI L FS H D + I+D
Sbjct: 358 PE--STILFVGYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIQVLEGFSAHADAEQIVDW 415
Query: 174 VKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++ + P V LVHGE LKERIQ ELG++ Y P
Sbjct: 416 MRSIKDPRPAKVFLVHGEGQAQEALKERIQEELGLEVYAP 455
>gi|297588707|ref|ZP_06947350.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
gi|297574080|gb|EFH92801.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
Length = 539
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 23/244 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-----RMNLRVPIYFSAGLTIQANMYY 55
+ K + GG V+IP+FA+GR QE+ L+ Y++ +VP+Y + + ++A +
Sbjct: 231 IEKVSSRGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAF 290
Query: 56 KMLISWTSQKVKETY----NAFDFKNVH---NFDRS--LIDAPGPCVLFATPGMLTGGFS 106
+QK K+ N F+F+N+H N D S L + P V+ ++ GM T G
Sbjct: 291 MKNTDLFNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNNVKFPRVIISSSGMATAGRV 350
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHT 165
KH E N + GY G++G L+ G ++L G I V +I+ L FS H
Sbjct: 351 RHHLKHNLWDEKNAVVFVGYQAEGSLGRILLDGIDEVKLFGETIKVNAEIYNLGGFSGHA 410
Query: 166 DGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHY 223
D +MD V + P+ + + HGE TL ++ + I+ P I ST
Sbjct: 411 DQNNLMDFVDNMKVKPKKIFITHGENEGAETLSNLLKEKYNIEAVIPE------IYSTEE 464
Query: 224 VKAG 227
AG
Sbjct: 465 FDAG 468
>gi|134045919|ref|YP_001097405.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132663544|gb|ABO35190.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 635
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + +A GKV+IP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 IAETIARKGKVIIPVFGIGRAQELMLVLEEGYNQGMFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N + R++ID+ P ++ T GML+GG S+E F
Sbjct: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIIDSDEPSIILTTSGMLSGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ A +E N I GY GT+G K+ G I L G + V +H L FS H
Sbjct: 519 KNLADNEKNAIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
+D K ++ ++ L P ++ VHGE K
Sbjct: 579 SDRKQLIKYLRKLKPIPDRILTVHGEVSK 607
>gi|308807807|ref|XP_003081214.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
gi|116059676|emb|CAL55383.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
Length = 572
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 7/183 (3%)
Query: 20 RAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFD 74
RAQEL ++L+D+W + RVPIY ++ L +A Y+ I+ + +K + N F
Sbjct: 234 RAQELLLILEDFWAQNPDLQRVPIYQASTLARKAMTIYQTYINVLNADMKAAFEEANPFV 293
Query: 75 FKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIG 133
F +V + + S +D GPCV+ ATP ML G S E+F+ W N + + + + GT+
Sbjct: 294 FNHVKHISKASELDDVGPCVVLATPSMLQSGLSRELFESWCEEPKNGVIIADFAVQGTLA 353
Query: 134 NKLMSG-NPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKM 192
+++S N +G ++ + + ++FS H D + L+P HV+LVHGE +M
Sbjct: 354 REILSDVNKVTARDGQELQLNMSVDAISFSAHADYPQTQAFLDTLAPPHVVLVHGEAGEM 413
Query: 193 ATL 195
L
Sbjct: 414 GRL 416
>gi|336121952|ref|YP_004576727.1| KH-domain/beta-lactamase-domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334856473|gb|AEH06949.1| KH-domain/beta-lactamase-domain protein [Methanothermococcus
okinawensis IH1]
Length = 635
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + + GKV+IP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 VAETIKRKGKVIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F F+ V N + R++ID+ PC++ T GML+GG S+E F
Sbjct: 459 YLSKNIRNRIFHEGDNPFLSEVFRKVKNTNNRRNIIDSNEPCIILTTSGMLSGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQL-AFSPH 164
K A E N I GY GT+G K+ G I + + + V +H L FS H
Sbjct: 519 KSLAEDEKNAIVFVGYQAEGTLGRKIQRGWKEIPIMNRNGKSKAVKVNLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATL 195
+D K ++ ++ L P+ ++ VHGE K L
Sbjct: 579 SDRKQLIKYLRKLKPMPERILTVHGEASKCVDL 611
>gi|11498093|ref|NP_069318.1| mRNA 3'-end processing factor [Archaeoglobus fulgidus DSM 4304]
gi|2650146|gb|AAB90756.1| mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus DSM
4304]
Length = 632
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 17/233 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+++ + GGKVLIP FA+GR+QE+ I+L++ LR + G+ +A +
Sbjct: 397 INRTLDRGGKVLIPTFAVGRSQEVMIVLEEAMREKRLRETYVYLDGMIYEATAIHTAYPE 456
Query: 61 WTSQKVKETY-----NAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + ++++ N F +N D S +I P P ++ AT GML GG +E F
Sbjct: 457 YLNAQLRDLIFYHGINPFISENFVRVDSSSKREEVISDPSPSIIIATSGMLNGGPVMEYF 516
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI--ELEGTKIDVRCQIHQL---AFSPHT 165
+H A E N I GY GT+G K+ G + ++G + V ++ FS H+
Sbjct: 517 RHLAEDERNTIVFVGYQAEGTLGRKIQKGWKEVPFPVDGRREVVEVKMEVETVDGFSGHS 576
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D K +M+ +++L+ P+ V VHG++ K L I I+ P N E++
Sbjct: 577 DRKQLMNYIRYLNSKPEKVATVHGDESKCIDLASSIYKTYRIETRAPMNLETI 629
>gi|407463310|ref|YP_006774627.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046932|gb|AFS81685.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 646
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 410 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMIEAPVFTEGMISEASAIHESYPE 469
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 470 YLARELKQKILETDDNPFDSEYFTNIEHADAREEPMRENSPCIILATSGMLEGGPVLEYF 529
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + + + Y + GT+G +++ G+ + G + + + C + +L FS H
Sbjct: 530 KNIAPDKKSKVLFVSYQVNGTLGRRVLDGSKQATMLGKEGKVEVVTINCGVEKLDGFSGH 589
Query: 165 TDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P + V++ HGE+ K L I+ + + P E++
Sbjct: 590 SDYNQLMSFVQRLRPKLRRVLVNHGERKKSENLAMNIRRMHRVPAHYPQIQEAI 643
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 8/146 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 285
Query: 59 ISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+F+ W
Sbjct: 286 VNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSG 139
+ N + + GYC+ GT+ L+ G
Sbjct: 345 CTDKRNGVIIAGYCVEGTLAKILVHG 370
>gi|401564801|ref|ZP_10805668.1| beta-Casp domain protein [Selenomonas sp. FOBRC6]
gi|400188495|gb|EJO22657.1| beta-Casp domain protein [Selenomonas sp. FOBRC6]
Length = 536
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYY---------K 56
GG V+IP+FA+GR Q L + W+ R++ +PI + L IQA + +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYNLWKAGRLDGDIPIIIDSPLAIQATRVFLKNYEDFDEE 297
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ + Q ++ R+L A G ++ + GM G L KH W
Sbjct: 298 AIAFFGEQGTIPSFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P L GY G++G +L+ G + + G +I V+ QI L FS H D + I++
Sbjct: 358 PESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIQVLEGFSAHADAEQIVEW 415
Query: 174 VKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++ ++ P V LVHGE LKERIQ ELG++ Y P
Sbjct: 416 MRSITEPRPAKVFLVHGEGQAQEALKERIQEELGLEVYAP 455
>gi|429735291|ref|ZP_19269260.1| metallo-beta-lactamase domain protein [Selenomonas sp. oral taxon
138 str. F0429]
gi|429159403|gb|EKY01918.1| metallo-beta-lactamase domain protein [Selenomonas sp. oral taxon
138 str. F0429]
Length = 550
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYY---------K 56
GG V+IP+FA+GR Q L + W+ R++ +PI + L IQA + +
Sbjct: 252 GGNVIIPSFAVGRTQTLLYYFYNLWKAGRLDGDIPIIIDSPLAIQATRVFLKNYEDFDEE 311
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ + Q ++ R+L A G ++ + GM G L KH W
Sbjct: 312 AIAFFGEQGTIPSFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 371
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P L GY G++G +L+ G + + G +I V+ QI L FS H D + I++
Sbjct: 372 PESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIQVLEGFSAHADAEQIVEW 429
Query: 174 VKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++ ++ P V LVHGE LKERIQ ELG++ Y P
Sbjct: 430 MRSITEPRPAKVFLVHGEGQAQEALKERIQEELGLEVYAP 469
>gi|161529235|ref|YP_001583061.1| beta-lactamase domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160340536|gb|ABX13623.1| beta-lactamase domain protein [Nitrosopumilus maritimus SCM1]
Length = 646
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V+ +A GGKVLIP A+GRAQE+ +++D Y + + F+ G+ +A+ Y +
Sbjct: 410 VNNTLADGGKVLIPIPAVGRAQEIMMVIDHYMKSGEMIEAPVFTEGMISEASAIHESYPE 469
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L QK+ ET N FD F N+ + D + PC++ AT GML GG LE F
Sbjct: 470 YLARELKQKILETDDNPFDSEYFTNIEHADAREEPMREDSPCIILATSGMLEGGPVLEYF 529
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ AP + + + Y + GT+G +++ G+ + G + + C + +L FS H
Sbjct: 530 KNIAPDKKSKVLFVSYQVNGTLGRRVLDGSKQATMLGKDGKVEVVTINCGVEKLDGFSGH 589
Query: 165 TDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D +M V+ L P + V++ HGE+ K L I+ + + P E++
Sbjct: 590 SDYNQLMSFVQRLRPKLRRVLVNHGERKKSENLAMNIRRMHRVPAHYPQIQEAI 643
>gi|150400309|ref|YP_001324076.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150013012|gb|ABR55464.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 635
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
GGKV+IP F +GRAQEL ++L++ + + P+Y G+ +A + + S+ ++
Sbjct: 407 GGKVIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPEYLSKAMR 465
Query: 68 -----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
E N F FK V N + R+++D C++ T GML+GG S+E FK+ A E
Sbjct: 466 NRIFHEGDNPFLSEVFKKVKNTNDRRNIMDGDEACIILTTSGMLSGGPSVEYFKNLAEDE 525
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPHTDGKGIM 171
N I GY GT+G K+ G I L G + V +H L FS H+D K ++
Sbjct: 526 KNAIVFVGYQSEGTLGRKIQRGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLI 585
Query: 172 DLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
++ L P ++ VHGE K L + P N +S+
Sbjct: 586 KYLRKLKPIPDRILTVHGEASKCIDLASTAYKLFKKETRSPMNLDSI 632
>gi|12846103|dbj|BAB27031.1| unnamed protein product [Mus musculus]
Length = 406
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 99/176 (56%), Gaps = 13/176 (7%)
Query: 55 YKMLISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEV 109
Y+ ++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+
Sbjct: 4 YQTYVNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMIQNGLSREL 62
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGK 168
F+ W + N + + GYC+ GT+ +MS I + G K+ ++ + ++FS HTD +
Sbjct: 63 FESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQ 122
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
+ ++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 123 QTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 178
>gi|167043166|gb|ABZ07875.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_ANIW141J13]
Length = 643
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYK---- 56
V+ + GGKVLIP A+GRAQEL +++D Y + L F G+ +A ++
Sbjct: 407 VNSVIKEGGKVLIPIPAVGRAQELMLVIDQYMKSGGLVEAPVFMEGMIQEATAIHEAFPE 466
Query: 57 MLISWTSQKVKETY-NAFD---FKNVHNFDRSLIDAP----GPCVLFATPGMLTGGFSLE 108
L+ +K+ ET N FD F N+ + D D P PC++ AT GML GG LE
Sbjct: 467 YLVRDLKKKILETDDNPFDSEYFTNITHQDGR--DEPLRENSPCIIIATSGMLEGGPVLE 524
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFS 162
F++ AP N I Y + GT+G ++M G + + G + I + C +L FS
Sbjct: 525 YFRNVAPHAKNKILFVSYQVNGTLGRRVMDGAKQVSILGKEGKIEVISINCSTERLDGFS 584
Query: 163 PHTDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D +M V L P + V++ HGE+ K L I+ + + P E++
Sbjct: 585 GHSDYNQLMSFVHRLRPKLRRVLVNHGERRKSENLSMSIRRMYRVSSHYPQIQEAI 640
>gi|167045029|gb|ABZ09693.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_APKG8G15]
Length = 643
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
V+ + GGKVLIP A+GRAQEL +++D Y + L F G+ +A ++
Sbjct: 407 VNSVLKEGGKVLIPIPAVGRAQELMLVIDQYMKSGELVEAPVFMEGMIQEATAIHEAFPE 466
Query: 58 -LISWTSQKVKETY-NAFD---FKNVHNFDRSLIDAP----GPCVLFATPGMLTGGFSLE 108
L+ +K+ ET N FD F N+ + D D P PC++ AT GML GG L+
Sbjct: 467 YLVRDLKKKILETDDNPFDSEYFTNITHQDER--DEPLRENSPCIIIATSGMLEGGPVLD 524
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFS 162
F++ AP N I Y + GT+G ++M G + + G + + + C +L FS
Sbjct: 525 YFRNIAPHTKNKILFVSYQVNGTLGRRVMDGARQVSILGKEGRIEVVSINCSTERLDGFS 584
Query: 163 PHTDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D +M V L P + V++ HGEK K L I+ + + P E++
Sbjct: 585 GHSDYNQLMSFVHRLRPKLRRVLVNHGEKRKSENLSTSIRRMYRVSSHYPQIQEAI 640
>gi|297619164|ref|YP_003707269.1| KH-domain/beta-lactamase-domain-containing protein [Methanococcus
voltae A3]
gi|297378141|gb|ADI36296.1| KH-domain/beta-lactamase-domain protein [Methanococcus voltae A3]
Length = 635
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + +A GGKV++P F +GRAQEL ++L++ + + P++ G+ +A +
Sbjct: 400 ISETIAKGGKVILPVFGIGRAQELMLVLEEGYNQGIFNAPVFLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V + R++I PC++ AT GMLTGG S+E F
Sbjct: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKDTKDRRNVIGRDEPCIILATSGMLTGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K A E N I GY GT+G K+ G I L G I V+ +H L FS H
Sbjct: 519 KTLADDEKNAIVFVGYQSEGTLGRKIQKGWKEIPLMGKNGKTRAIKVKLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
D K ++ ++ L P ++ +HGE K
Sbjct: 579 CDRKQLIKYLRKLKPIPDKILTIHGEASK 607
>gi|325958080|ref|YP_004289546.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329512|gb|ADZ08574.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
AL-21]
Length = 634
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
+++ + GGKVL+P FA+GRAQEL I+LD+Y M VP++ G+ +A +
Sbjct: 400 IYRTLERGGKVLMPVFAVGRAQELMIVLDEYIRHGMIEEVPVFID-GMIWEATAIHTARP 458
Query: 60 SWTSQKVKETY-----NAFDFKNVHNF----DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ +++ N F H +R I P ++ +T GMLTGG S+E F
Sbjct: 459 EYLSKDLRDQIFHMGRNPFISDVFHKVNGGNERQEIVEGEPAIILSTSGMLTGGNSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK--IDVRCQIHQL-AFSPHT 165
K E N + GY G++G +L G I L EG +V+ I + FS H+
Sbjct: 519 KQLCGDEKNSLVFVGYQAEGSLGRRLQKGWKEIPLKEEGKTNVYNVKMHIKTIEGFSGHS 578
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D + +MD V+ LS P+ ++ HG+ K L I I+ P N E++ I
Sbjct: 579 DRRQLMDYVRRLSPKPEKILFCHGDNYKTLDLASSIYRSYKIETKTPMNLETVRI 633
>gi|452825586|gb|EME32582.1| RNA-metabolising metallo-beta-lactamase family protein [Galdieria
sulphuraria]
Length = 370
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V C+ GGKVL+P FA+GRAQEL +LL+ YW+R +L PI FS Q Y
Sbjct: 200 VLDCLLDGGKVLVPVFAIGRAQELLLLLEMYWQRFHLSFPILFSTKNAHQVLQIYTEFAH 259
Query: 61 WTSQKVKETYNAFDFKN----VHNFD-RSLIDA----PGPCVLFATPGMLTGGFSLEVFK 111
WT ++ V D L+DA P V TPG L G SL+VF+
Sbjct: 260 WTRTPSTRDEQMMSYQTWWSRVQVVDPEQLLDAVEEWDRPLVALTTPGTLARGLSLQVFR 319
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMS----GNPTIELEGTKIDVRCQI 156
AP E NL+ +P +C++GTI +L+ I E I +RC++
Sbjct: 320 RIAPDEKNLLIIPHFCISGTIEKRLLEEGCCDENKITNENESIRIRCKV 368
>gi|194386428|dbj|BAG61024.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 55 YKMLISWTSQKVKETYN---AFDFKNVHNFDRSL--IDAPGPCVLFATPGMLTGGFSLEV 109
Y+ ++ + K+++ N F FK++ N +S+ D GP V+ A+PGM+ G S E+
Sbjct: 4 YQTYVNAMNDKIRKQININNPFVFKHISNL-KSMDHFDDIGPSVVMASPGMMQSGLSREL 62
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGK 168
F+ W + N + + GYC+ GT +MS I + G K+ ++ + ++FS HTD +
Sbjct: 63 FESWCTDKRNGVIIAGYCVEGTFAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQ 122
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
+ ++ L P HVILVHGE+ +MA LK + E+ I+ ++P N E++ +
Sbjct: 123 QTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 178
>gi|392338884|ref|XP_003753662.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
gi|392345811|ref|XP_003749372.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
Length = 1015
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLR-VPIYFSAGLTIQANMYYKML 58
VH V G+ LIP LGRAQEL +LD+YW+ L+ +PIY++ L + Y+
Sbjct: 230 VHNIVNKXGRGLIPVLVLGRAQELLPILDEYWQDHPELQDIPIYYTLPLXKKCMAVYQTY 289
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+ + K+ + N F F+++ N D G V+ +PGM+ G S E F+
Sbjct: 290 ANDMNGKIWKQININNPFVFEHISNLKSMDHFDDIGLSVVMXSPGMIQNGVSRERFERXW 349
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N + + GYC G + +MS I + G K+ ++ + ++FS TD +
Sbjct: 350 CHKRNGVIVTGYCAEGILAKHIMSEPEEITTMPGQKLPLKMSVDYISFSARTDYWQTSEF 409
Query: 174 VKFLSPQHVILVHGEKPKMATLKERI------QSELGIKCYDPANNESMCI 218
+ L P HVI VHGE+ ++ LK + E+ IK + P N E++ +
Sbjct: 410 IHALKPSHVISVHGEQNEIDRLKAALIKKYEDNDEVHIKVHSPWNTETVAL 460
>gi|312136618|ref|YP_004003955.1| kh-domain/beta-lactamase-domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224337|gb|ADP77193.1| KH-domain/beta-lactamase-domain protein [Methanothermus fervidus
DSM 2088]
Length = 650
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 18/235 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
++ + GGKVLIP FA+GRAQEL ++LD+Y + L +PI F G+ +A +
Sbjct: 416 IYDTIKRGGKVLIPVFAVGRAQELMVVLDEYIKSGILEEIPI-FVDGMVWEATAIHTTRP 474
Query: 60 SWTSQKVKET-----YNAFD---FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ + + YN F F V + D R + PCV+ +T GML GG S+E F
Sbjct: 475 EYLSKTLSDQIFHYGYNPFTSEIFNKVSSSDERKDVVEGEPCVILSTSGMLAGGNSVEYF 534
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK----IDVRCQIHQL-AFSPHT 165
K E N + GY G++G +L I E V+ QI + FS H+
Sbjct: 535 KWLCEDEKNTLVFVGYQAEGSLGRRLQKNRRDITFEENGKMKVYKVKMQIETIEGFSGHS 594
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D K +M V LS P+ +++ HG K L I + I+ P N E++ I
Sbjct: 595 DRKQLMKYVHNLSPKPEKILVCHGNAYKSLDLASSIYKKYRIETRAPLNLEAVRI 649
>gi|312135668|ref|YP_004003006.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
gi|311775719|gb|ADQ05206.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
Length = 821
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
+ + ++ GGKVLIPAFA+GRAQE+ ++L +Y ++ + ++ + T
Sbjct: 214 IFEVISQGGKVLIPAFAIGRAQEVILILRNYMKKRKVSFNVFIDGMVREVIRVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + + N K +I + PCV+ ++ GMLTGG SL
Sbjct: 274 LSSRYYKRVLKGEEIFLADNINVVSDKKQR---EEIISSSDPCVIISSSGMLTGGPSLFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ S+ L+ + GY G KL+ I L G + +V+C++ + S
Sbjct: 331 AEKIVQSQNALVAITGYQDEEAPGRKLLELAELPESEKKINLNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H+D I+ + L P+ VI VHG + ++ + + EL P N E I
Sbjct: 391 HSDRDKILGFLATLRPRTVIFVHGSEDAISQISDMAVKELDANIVVPQNGEVNII 445
>gi|333910570|ref|YP_004484303.1| beta-lactamase domain-containing protein [Methanotorris igneus Kol
5]
gi|333751159|gb|AEF96238.1| beta-lactamase domain protein [Methanotorris igneus Kol 5]
Length = 419
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GRAQE+ +++++Y L+ VP+Y L I A Y +
Sbjct: 201 IAETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLKDVPVYVDGSL-IHATGIYMSYL 259
Query: 60 SWTSQKVKETY--NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
W + K+K F + D S+ + PC++ +T GM+ GG L+ + S
Sbjct: 260 DWLNPKLKNMVENRVNPFGELKKADNSVFNKE-PCIIISTSGMVQGGPVLQ-YLSLLKSP 317
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N + L GY GT+G +L G I KI VR ++ ++ FS H D ++ +K +
Sbjct: 318 KNKLILTGYQAEGTLGRELEEGAEEITPFKNKIPVRGKVVKIEFSAHGDYNSLVRYIKKI 377
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDPAN 212
+P+ +VHGE+ + + I L I + P N
Sbjct: 378 PTPKKAFVVHGERYQTLSFAMTIWKSLKIPTFAPVN 413
>gi|182412378|ref|YP_001817444.1| beta-lactamase domain-containing protein [Opitutus terrae PB90-1]
gi|177839592|gb|ACB73844.1| beta-lactamase domain protein [Opitutus terrae PB90-1]
Length = 464
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 17/226 (7%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYY------- 55
+AGGGKVL+P FA+GRAQ L LL + L+ P + + + I+A+ Y
Sbjct: 237 AIAGGGKVLVPTFAVGRAQLLTALLAWAFRHKELKPFPAFLDSPMAIEASRIYDKHGELF 296
Query: 56 --KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH- 112
+M+ + ++ + + R++ PGPC++ A GM T G L +H
Sbjct: 297 DDEMVAFLRERPIRHDLSTLRMTATADESRAINAVPGPCLIMAGAGMCTAGRILHHLRHN 356
Query: 113 -WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
W+P +I GY GT+G +L+ G + + G I VR +IH L FS H +
Sbjct: 357 LWSPQAHVIIV--GYQGRGTLGRQLVDGATRVSIFGEPIVVRAKIHTLGGFSAHAGQTDL 414
Query: 171 MDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ + L+P V+L HGE TL I+ G+ + PA E
Sbjct: 415 LAWMSALAPVKPRVVLTHGEDQPRTTLAALIKERFGLVPHLPAIGE 460
>gi|159904583|ref|YP_001548245.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159886076|gb|ABX01013.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 635
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + +A GK +IP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 IAETIARKGKAIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N + R++ID+ P ++ T GML+GG S+E F
Sbjct: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIIDSDEPGIILTTSGMLSGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ A E N I GY GT+G K+ G I L G + V +H L FS H
Sbjct: 519 KNLADDEKNAIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
+D K ++ ++ L P ++ VHGE K
Sbjct: 579 SDRKQLIKYLRKLKPIPDRILTVHGEVSK 607
>gi|150403634|ref|YP_001330928.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150034664|gb|ABR66777.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 635
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + +A GK +IP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 IAETIARKGKAIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N + R++ID+ P ++ T GML+GG S+E F
Sbjct: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIIDSDEPGIILTTSGMLSGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ A E N I GY GT+G K+ G I L G + V +H L FS H
Sbjct: 519 KNLADDEKNAIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
+D K ++ ++ L P ++ VHGE K
Sbjct: 579 SDRKQLIKYLRKLKPIPDRILTVHGEVSK 607
>gi|156343760|ref|XP_001621104.1| hypothetical protein NEMVEDRAFT_v1g222359 [Nematostella vectensis]
gi|156206741|gb|EDO29004.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + ++
Sbjct: 161 VHDIVNRGGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTY 220
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+K+ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 221 VNAMNDKIKKQIAISNPFVFKHISNLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWC 280
Query: 115 PSEMNLITLPGYCLAGTIGNK--LMSGNP 141
N + + GYC+ GT+ + L+ NP
Sbjct: 281 TDRRNGVIIAGYCVEGTLAKEVSLVVHNP 309
>gi|294953157|ref|XP_002787623.1| hypothetical protein Pmar_PMAR012397 [Perkinsus marinus ATCC 50983]
gi|239902647|gb|EER19419.1| hypothetical protein Pmar_PMAR012397 [Perkinsus marinus ATCC 50983]
Length = 802
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 11/138 (7%)
Query: 88 APG-PCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL- 145
APG PCV+ A PGML G S E+F+ WAP N + + GY ++GT+ + L + T+ L
Sbjct: 15 APGMPCVVMAAPGMLQSGTSRELFEQWAPDPKNGVIITGYSVSGTLAHDLQNDPDTLTLT 74
Query: 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI 205
+G K+ VRC ++FS H+D D ++ L+ HV LVHGE+ TL R+Q +LG+
Sbjct: 75 DGRKLPVRCSTKTISFSAHSDYGQTRDFIQALNVPHVCLVHGEQ----TLMRRLQDKLGL 130
Query: 206 -----KCYDPANNESMCI 218
C PAN +S+ I
Sbjct: 131 DFPGTSCNTPANTQSVEI 148
>gi|344996811|ref|YP_004799154.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965030|gb|AEM74177.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 822
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
V + V+ GGKVLIPAFA+GRAQE+ ++L +Y ++ + ++ + T
Sbjct: 214 VAEVVSQGGKVLIPAFAIGRAQEIILILRNYMKKRKVSFNVFIDGMVREVIRVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + + N K ++ + PCV+ ++ GMLTGG S+
Sbjct: 274 LSSRYYKRVLKGEEIFLADNINVVSDKKQR---EEIVSSSDPCVIISSSGMLTGGPSVFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ S+ LI + GY G KL+ IEL G + +V+C++ + S
Sbjct: 331 AEKIVQSQNALIAITGYQDEEAPGRKLLELAELPENERKIELNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H+D I+ + L P+ VI HG + ++ + + EL P N E I
Sbjct: 391 HSDRDRILGFLATLKPRTVIFAHGSEDAISQISDMAVKELEANIIVPQNGEINSI 445
>gi|408404164|ref|YP_006862147.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364760|gb|AFU58490.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 700
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 18/231 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILL-DDYWERMNLRVPIYFSAGLTIQANM----YY 55
++K + GGKVLIP A+GRAQE+ +++ + E + PIY G+ +A+ Y
Sbjct: 466 INKTLIEGGKVLIPVPAVGRAQEIMLVMAKEMREGRLVESPIYIE-GMISEASAIHMSYA 524
Query: 56 KMLISWTSQKVKETYNAFDFK-----NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L S + V + N F + + H +++ P ++ AT GML GG S+E F
Sbjct: 525 HYLGSEVRKSVSQGINPFQSEYFTVISGHGKRDDVLNDENPAIVMATSGMLEGGPSVEYF 584
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSG--NPTIELEGTK----IDVRCQIHQL-AFSP 163
K AP+ N I Y + GT+G +++ G + ++ T + VRCQ ++ FS
Sbjct: 585 KELAPNPKNKIMFVSYQINGTLGRRVLDGAMSEVSMMDKTGKVKVVPVRCQTQKIDGFSG 644
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
H+D I++ V + P+ V++ HGE+ K + I S L I+ P N E
Sbjct: 645 HSDFNQILNFVSRVKPKRVLVNHGERSKSENVASAIYSRLKIRSGVPDNRE 695
>gi|103487953|ref|YP_617514.1| beta-lactamase-like protein [Sphingopyxis alaskensis RB2256]
gi|98978030|gb|ABF54181.1| beta-lactamase-like protein [Sphingopyxis alaskensis RB2256]
Length = 473
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 15/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYY---- 55
+ +CV GG V+IPAFA+GRAQ + L + VP+Y + + I A+ +
Sbjct: 248 IERCVRRGGTVVIPAFAVGRAQSILYHLSRLRAAGRISNVPVYLDSPMAIDASGIFCRHA 307
Query: 56 ---KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
++ + K D + ++L +P P V+ + GM TGG L K
Sbjct: 308 GDHRLTEAECDAACKVARYVRDVEE----SKALTMSPVPKVIISASGMATGGRVLHHLKR 363
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIM 171
+AP NLI G+ +GT G +++G P++++ G ++ VR ++ L+ S H D I+
Sbjct: 364 YAPDGRNLILFAGFQASGTRGAAMVAGAPSVKIHGEQVPVRAEVRNLSMLSAHADADEIL 423
Query: 172 D-LVKFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
L +F+ +P+ + HGE A L RI ELG C P + + +
Sbjct: 424 KWLGQFVRAPRMTFITHGEPDAAAALARRIGDELGWPCQIPGLGDRVVL 472
>gi|163783204|ref|ZP_02178198.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
gi|159881538|gb|EDP75048.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
Length = 458
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 16/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V K + GG VLIP++AL RAQ++ +L + +ER L ++ + L I A K+ +
Sbjct: 231 VLKTLYRGGNVLIPSYALERAQDVLFVLREMYERDILPECQVFLDSPLAINAT---KIFL 287
Query: 60 SWTSQKVKETYNAFDFKNVHNF-----------DRSLIDAPGPCVLFATPGMLTGGFSLE 108
+ETY F ++ +F + + D V+ A GMLTGG L
Sbjct: 288 QNPEFFDRETYRIFKERDPFSFPYLKFTRDVEESKKINDIKSGAVIIAGSGMLTGGRILH 347
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDG 167
KH E + GY GT+G K++ G +++ G +I V+ +++ + FS H D
Sbjct: 348 HLKHNLWREECSLIFVGYQPKGTLGRKIVDGADRVKILGEEIAVKAEVYTINGFSSHADQ 407
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ + + PQ LVHGE+ KMA E I+ +G+ + P ES+
Sbjct: 408 RELTQWLSHAKPQKAFLVHGEEDKMAVFSEHIKKVIGLDSHAPEFGESL 456
>gi|402302293|ref|ZP_10821411.1| beta-Casp domain protein [Selenomonas sp. FOBRC9]
gi|400380934|gb|EJP33741.1| beta-Casp domain protein [Selenomonas sp. FOBRC9]
Length = 536
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG V+IP+FA+GR Q L W+ R++ +PI + L IQA ++ +S
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYRLWKAGRLDGDIPIIIDSPLAIQAT---RVFLS----- 289
Query: 66 VKETYNAFDFKNVHNF--------------------DRSLIDAPGPCVLFATPGMLTGGF 105
Y FD +++ F R+L A G ++ + GM G
Sbjct: 290 ---NYEDFDEESIAFFGKNGKIPAFPQVRIAESAADSRALNSAEGSAIILSASGMADAGR 346
Query: 106 SLEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFS 162
L KH W P L GY G++G +L+ G + + G +I V+ QI L FS
Sbjct: 347 VLHHLKHNLWRPESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIKMLDGFS 404
Query: 163 PHTDGKGIMDLVKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H D + I+D ++ L+ P V LVHGE L+ERI ELG++ Y P +++ I
Sbjct: 405 AHADAEQIVDWMRALTAPRPAKVFLVHGEGHAQEALRERINEELGLEVYAPFLGDAVTI 463
>gi|320529204|ref|ZP_08030296.1| metallo-beta-lactamase domain protein [Selenomonas artemidis F0399]
gi|320138834|gb|EFW30724.1| metallo-beta-lactamase domain protein [Selenomonas artemidis F0399]
Length = 536
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG V+IP+FA+GR Q L W+ R++ +PI + L IQA ++ +S
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYRLWKAGRLDGDIPIIIDSPLAIQAT---RVFLS----- 289
Query: 66 VKETYNAFDFKNVHNF--------------------DRSLIDAPGPCVLFATPGMLTGGF 105
Y FD +++ F R+L A G ++ + GM G
Sbjct: 290 ---NYEDFDEESIAFFGKNGKIPAFPQVRIAESAADSRALNSAEGSAIILSASGMADAGR 346
Query: 106 SLEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFS 162
L KH W P L GY G++G +L+ G + + G +I V+ QI L FS
Sbjct: 347 VLHHLKHNLWRPESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIKMLDGFS 404
Query: 163 PHTDGKGIMDLVKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H D + I+D ++ L+ P V LVHGE L+ERI ELG++ Y P +++ I
Sbjct: 405 AHADAEQIVDWMRALTAPRPAKVFLVHGEGHAQEALRERINEELGLEVYAPFLGDAVTI 463
>gi|313896177|ref|ZP_07829730.1| putative ribonuclease [Selenomonas sp. oral taxon 137 str. F0430]
gi|312974976|gb|EFR40438.1| putative ribonuclease [Selenomonas sp. oral taxon 137 str. F0430]
Length = 536
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG V+IP+FA+GR Q L W+ R++ +PI + L IQA ++ +S
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYRLWKAGRLDGDIPIIIDSPLAIQAT---RVFLS----- 289
Query: 66 VKETYNAFDFKNVHNF--------------------DRSLIDAPGPCVLFATPGMLTGGF 105
Y FD +++ F R+L A G ++ + GM G
Sbjct: 290 ---NYEDFDEESIAFFGKNGKIPAFPQVRIAESAADSRALNSAEGSAIILSASGMADAGR 346
Query: 106 SLEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFS 162
L KH W P L GY G++G +L+ G + + G +I V+ QI L FS
Sbjct: 347 VLHHLKHNLWRPESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIKMLDGFS 404
Query: 163 PHTDGKGIMDLVKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H D + I+D ++ L+ P V LVHGE L+ERI ELG++ Y P +++ I
Sbjct: 405 AHADAEQIVDWMRALTAPRPAKVFLVHGEGHAQEALRERINEELGLEVYAPFLGDAVTI 463
>gi|302872375|ref|YP_003841011.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
gi|302575234|gb|ADL43025.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
Length = 821
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
+++ ++ GGKVLIPAFA+GRAQE+ ++L +Y ++ + I+ + T
Sbjct: 214 IYEVISQGGKVLIPAFAIGRAQEVILILRNYMKKRKVSFNIFIDGMVREVIKVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + + N K +I + PCV+ ++ GMLTGG S+
Sbjct: 274 LSSRYYKRVLKGEEIFLADNINVVSDKKQR---EEIISSSDPCVIISSSGMLTGGPSVFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ S LI + GY G KL+ I+L G + +V+C++ + S
Sbjct: 331 AEKIVQSPNALIAITGYQDEEAPGRKLLELAELSESEKKIDLNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H+D I+ + L P+ VI HG + ++ + + EL P N E I
Sbjct: 391 HSDRDKILGFLSTLRPRTVIFAHGSEEAISQISDMAVKELDANIVVPQNGEVNII 445
>gi|253742053|gb|EES98907.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 757
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 20/269 (7%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLRVPIYFSAGLTIQANMYYKMLISW 61
V G VL+P F++GR QEL +L +YW E+ RV IY+ + + A Y +
Sbjct: 266 VKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARVTIYYVSAIADNARQLYSKDKGF 325
Query: 62 TSQKVKETYNAFDFKNVHNFDRSLI------DAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
D + DR + + P V+F TPGML G S E++
Sbjct: 326 LRHG---DTGLSDIQTGKRKDRIIYTKTRPKNPKKPYVMFCTPGMLQSGVSKEMYNELCG 382
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
S NL+ + GY T+ KL+ G P G D + +I +L+FS H+D +D+++
Sbjct: 383 SPDNLLLVTGYATQDTLLYKLLEGKP----PGAYADAKMRIEELSFSAHSDYNQTLDVLR 438
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
P++V+ +HG + +++LK I +E + + S HY + G + F +
Sbjct: 439 KTRPRNVVFIHGSEKSISSLKRTIANETRVSFSEGDKEADKEEISFHYPRNGETVTF--A 496
Query: 236 CMNPNFQYLK--SGSEEKSVSGSKCTEGT 262
NP +K +G+E+ + +G + + T
Sbjct: 497 FTNPVQLNIKVDTGTEDTTQAGVEDSHST 525
>gi|308162204|gb|EFO64613.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 737
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 34/269 (12%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLRVPIYFSAGLTIQANMYYKML--- 58
V G VL+P F++GR QEL +L +YW E+ R+ IY+ + + A Y
Sbjct: 244 VKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARITIYYVSAIADNARQLYSKDKGF 303
Query: 59 ----------ISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLE 108
I +K K Y KN P V+F TPGML G S E
Sbjct: 304 LRHGDTGLSDIQTGKRKDKIIYTKTRPKN----------PKKPYVMFCTPGMLQSGVSKE 353
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
++ S NL+ + GY T+ KL+ G P G D + +I +L+FS H+D
Sbjct: 354 MYNELCGSPDNLLLVTGYATQDTLLYKLLEGKP----PGGYADAKMRIEELSFSAHSDYN 409
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGA 228
+D+++ P++V+ +HG + +++LK I +E I + S HY + G
Sbjct: 410 QTLDVLRKTRPRNVVFIHGSEKSISSLKRTIANETRINFSEGGKEADKEEISFHYPRNGE 469
Query: 229 SDAFIRSCMNPNFQYLK--SGSEEKSVSG 255
+ F + NP +K +G+E+ + +G
Sbjct: 470 TVTF--AFTNPVQLSIKVDTGAEDTAQTG 496
>gi|333988300|ref|YP_004520907.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. SWAN-1]
gi|333826444|gb|AEG19106.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
SWAN-1]
Length = 634
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 20/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+++ + GGKVLIP FA+GRAQE+ I+L++Y + VP+Y G+ +A +
Sbjct: 400 IYQTLQRGGKVLIPVFAVGRAQEIMIVLEEYIRHGIIEEVPVYID-GMIWEATAIHTARP 458
Query: 60 SWTSQKVKETY----------NAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ S+ +++ + F N N + +I+ P ++ +T GMLTGG S++
Sbjct: 459 EYLSKDLRDQIFHMGKNPFISDVFHKVNGGNNRQEIIEGE-PSIILSTSGMLTGGNSVDY 517
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE---GTKI-DVRCQIHQL-AFSPH 164
FK E N I GY G++G +L G I L+ T + +V+ QI + FS H
Sbjct: 518 FKWLCEDEKNSIIFVGYQSEGSLGRRLQKGWKEIPLKEDGKTNVYNVKMQIKTVQGFSGH 577
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+D + +MD ++ LS P+ +++ HG+ K L I + I+ P N E++ I
Sbjct: 578 SDRRQLMDYIRRLSPKPEKIMICHGDNYKTLDLASSIYRQYKIETKTPMNLETIRI 633
>gi|15679214|ref|NP_276331.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
gi|333944120|pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|333944121|pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|2622312|gb|AAB85692.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 636
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++ + GGK+LIP FA+GRAQEL I+L++Y + VP+Y G+ +AN +
Sbjct: 401 IYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYID-GMIWEANAIHTARP 459
Query: 60 SWTSQKVKET-----YNAFD---FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ +++ +N F F V+ D R I P ++ +T GMLTGG SLE F
Sbjct: 460 EYLSKDLRDQIFHMGHNPFISDIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYF 519
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKI---DVRCQIHQL-AFSPH 164
K N + GY G++G ++ G I L E K+ +VR I + FS H
Sbjct: 520 KWLCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+D + +M+ VK +S P+ ++L HG+ K L I I+ P N E++ I
Sbjct: 580 SDRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635
>gi|433656047|ref|YP_007299755.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294236|gb|AGB20058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 820
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 14/231 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
++ + GGKVLIPAFALGRAQE+ ++L + + +Y G+ YK+ +
Sbjct: 217 INAVLKNGGKVLIPAFALGRAQEIILILKKAINKGMINSKVYVD-GMVKDICRIYKLNPN 275
Query: 61 WTSQ----KVKETYNAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKHW 113
+ Q K+ + F NV DR + PCV+ ++ GMLTGG S +
Sbjct: 276 YLRQNLAKKIFKGGEIFFDDNVVPVDRPEMREDIIKEPCVIVSSSGMLTGGPSQWYAEKL 335
Query: 114 APSEMNLITLPGYCLAGTIGNKLM------SGNPTIELEGTKIDVRCQIHQLAFSPHTDG 167
A E NLI + GY + G KL+ S + ++L +I V+C + + S H D
Sbjct: 336 ADDEKNLIAITGYQDEESPGRKLLELTDEKSEDKKLKLGDKEIPVKCAVDKFGLSAHADM 395
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
I+ LV L P+ V LVHG+ + L + IQ ++ Y P N ++ I
Sbjct: 396 SEILSLVNNLHPKKVFLVHGDPDTINFLGKEIQKDIKSDVYVPLNGDAYDI 446
>gi|389807250|ref|ZP_10204044.1| beta-lactamase domain-containing protein [Rhodanobacter thiooxydans
LCS2]
gi|388444501|gb|EIM00605.1| beta-lactamase domain-containing protein [Rhodanobacter thiooxydans
LCS2]
Length = 463
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 7/229 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V + A GG ++IPAFA+GRAQ L + L ER + RVP+Y ++ + I A Y
Sbjct: 233 VRRVAARGGVMVIPAFAVGRAQALLLHLARLRERGEIPRVPVYLNSPMAIDATHIYHRHH 292
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ + + + F N ++L GP ++ + GM TGG L + + P
Sbjct: 293 DEHHVSDEDCRRMFELATFVNSVEESKALNRQHGPMIIISASGMATGGRVLHHIEAFGPD 352
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
+ N I L GY GT G L G T+ + G ++ +R ++ QL FS H D ++D ++
Sbjct: 353 DRNAIVLAGYQAGGTRGAALAGGASTLRMFGREVPIRAEVIQLEGFSGHADANELLDWMR 412
Query: 176 F--LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 222
+P+ V + HGE L+ RIQ ELG + P + E + + H
Sbjct: 413 TAPTAPRVVYVTHGELDAADALRARIQRELGWSAHAPEHLERVTLEGGH 461
>gi|156936804|ref|YP_001434600.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156565788|gb|ABU81193.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 652
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 118/250 (47%), Gaps = 35/250 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR------VPIYFSAGLTIQANMY 54
++K + GG VLIP A+GRAQE+ +LL D + ++ VPIY G+ +A
Sbjct: 399 INKTIEKGGFVLIPVLAVGRAQEILLLLVDAVQNKLIKSPEGGAVPIYLD-GMVYEATAI 457
Query: 55 YKMLISWTSQKVKETY----NAFDFKNVHNFDRSLIDA---------PGPCVLFATPGML 101
+ W ++ VKE N F VH + I+ P V+ AT GML
Sbjct: 458 HAAYPEWLAKSVKERIIKGENPFLADFVHKVESVSIEGGISREEVLESEPGVILATSGML 517
Query: 102 TGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-- 159
TGG SLE F+ AP N I Y AGT+G L G +E+ D + +++QL
Sbjct: 518 TGGPSLEYFRKLAPDPKNSIVFVAYQAAGTLGRTLKEGADRVEI-AINEDGKSKLYQLEV 576
Query: 160 --------AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSEL--GIKC 207
FS H+ +++ VK ++ P+++IL HGE ++ L + + G+K
Sbjct: 577 RSHVFSVEGFSGHSSRSELINWVKSVTPRPKNIILNHGEPSRIEGLARVLSRTVARGMKI 636
Query: 208 YDPANNESMC 217
Y P +S+
Sbjct: 637 YTPNIRDSIV 646
>gi|91787107|ref|YP_548059.1| beta-lactamase-like protein [Polaromonas sp. JS666]
gi|91696332|gb|ABE43161.1| beta-lactamase-like protein [Polaromonas sp. JS666]
Length = 453
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQEL--CILLDDYWERMNLRVPIYFSAGLTIQAN---MYY 55
+++ A GG V+IPAFA+GRAQ L CI L ++ +P+Y ++ + A + +
Sbjct: 227 INRTAARGGVVVIPAFAVGRAQSLMYCIHLLKAQGVIHDNLPVYLNSPMAANATQVFLKH 286
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K + T+ + K + R L GP V+ A GM TGG + K +AP
Sbjct: 287 KSELRLTAAQCKAMTHTAHIVGTPEESRLLNTRKGPMVIIAASGMATGGRVVHHLKAFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
N I G+ GT G + G PT+ + G + V ++ L S H D I+ +
Sbjct: 347 DPRNTILFAGFQAGGTRGAIIAGGAPTVRIHGEDVPVHAEVAMLDDLSAHADAAEIIGWL 406
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
K +P+ + HGE P +++RI+ EL C+ P E++ +
Sbjct: 407 KGFKAAPKKTFITHGEPPAADAMRQRIERELHWTCHMPCYLETVAL 452
>gi|402696939|gb|AFQ90658.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Draco beccarii]
Length = 220
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 84 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQXXXXXXEIPIYYASSLAKKCMAVYQTY 143
Query: 59 ISWTSQKVKETYNA---FDFKNVHNF-DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 144 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 203
Query: 115 PSEMNLITLPGYCLAGT 131
+ N + + GYC+ GT
Sbjct: 204 TDKRNGVIIAGYCVEGT 220
>gi|414162747|ref|ZP_11418994.1| hypothetical protein HMPREF9697_00895 [Afipia felis ATCC 53690]
gi|410880527|gb|EKS28367.1| hypothetical protein HMPREF9697_00895 [Afipia felis ATCC 53690]
Length = 451
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-------VPIYFSAGLTIQANM 53
V + + GG V+IPAFA+GRAQ L YW R L+ VP++ + + + A+
Sbjct: 227 VARTITRGGTVIIPAFAVGRAQSLL-----YWFR-RLKDSGRLGNVPVFLDSPMAVDAS- 279
Query: 54 YYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDA------PGPCVLFATPGMLTGGFSL 107
++L + +V ++ RS D+ P P V+ + GM TGG L
Sbjct: 280 --ELLCRHLQDHRLSEHECRTSCDVASYVRSTEDSKALTANPVPKVIISASGMATGGRVL 337
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTD 166
K +AP + I G+ AGT G ++SG ++ + G+ I VR ++ L+ FS H D
Sbjct: 338 HHLKSYAPDPKSTILFAGFQAAGTRGAAMVSGASSVRIHGSDIPVRAEVQNLSMFSAHAD 397
Query: 167 GKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
I+ ++ +P+ + HGE LK+RI+ ELG C P + ES
Sbjct: 398 ATEIVRWLRGFERAPRMTFITHGEPTAAEALKQRIKQELGWACSIPKHLES 448
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 24/160 (15%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
V + GG+VL+P FALGRAQEL ++LD+YW R +VPIY+ + + + Y+
Sbjct: 243 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 302
Query: 59 ISWTSQKVKE-----------------TYNAFDFK---NVHNFDRSLIDAPGPCVLFATP 98
I ++ +K T +DF+ ++ N DR + G CV+ A+P
Sbjct: 303 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDR--FEDVGGCVMLASP 360
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS 138
GML G S E+ + WAP+E N + + GY + GT+G ++++
Sbjct: 361 GMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIIN 400
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 16/149 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H ++ GG+VLIPA+ALGRAQEL ++LD+YW VPIY+++ L + Y+
Sbjct: 237 IHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTY 296
Query: 59 ISWTSQKVKETY---NAFDFKN------VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ +++++ + N FDFK+ + NF+ GP V+ A+PG L G S ++
Sbjct: 297 INSMNERIRNQFANSNPFDFKHISPLKSIENFNDV-----GPSVVMASPGGLQSGLSRQL 351
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS 138
F W + N +PGY + GT+ +++
Sbjct: 352 FDMWCSDKKNACVIPGYVVGGTLAKTIIN 380
>gi|300856380|ref|YP_003781364.1| metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
gi|300436495|gb|ADK16262.1| putative metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
Length = 825
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 14/224 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
++ C+ GK+LIPAFALGRAQE+ +++ + L+ + G+ N YK+
Sbjct: 216 INDCIEKKGKMLIPAFALGRAQEVLLIIKKAVNKNILKDTKVYVDGMIKDINRTYKLNPL 275
Query: 58 -LISWTSQKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVFK 111
L + +K+ F N+ D + ++ PCV+ ++ GMLTGG+S +
Sbjct: 276 YLKNSLGKKILRGIEPFYDDNIIAVDNNKLREEVLKDDEPCVIVSSSGMLTGGYSQYYAE 335
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMS-----GNPTIELEGTKIDVRCQIHQLAFSPHTD 166
AP E I + GY + G KL++ + + + + V C++ ++ S H+D
Sbjct: 336 KIAPMENGYIVITGYQDEESPGRKLLNLLDEEKDKKLYINEKTVPVNCKVEKVGLSAHSD 395
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
I L+ FL+P+++ LVHG + + L + + ++ + Y P
Sbjct: 396 KYEIKSLIDFLTPKNIFLVHGNEEVVENLSKELSKDVRGRVYAP 439
>gi|284174985|ref|ZP_06388954.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
98/2]
Length = 638
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 24/239 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 402 INKTLNKGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 460
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W ++V+E + + FK + + + P ++ AT GML GG ++E FK
Sbjct: 461 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDIAKGE-PSIILATSGMLNGGPAVEFFK 519
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSPH 164
AP N I Y GT+G K+ G +++ E +I++ + + FS H
Sbjct: 520 TMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
+D + +++ ++ + P++VIL HGE + I+ + LG K Y PA +S+ +
Sbjct: 579 SDKRQLLNFLRNIEPKPKNVILNHGEASSIRAFANYIREDRLGYKPNIYTPAILDSLRV 637
>gi|384434275|ref|YP_005643633.1| KH-domain/beta-lactamase-domain-containing protein [Sulfolobus
solfataricus 98/2]
gi|261602429|gb|ACX92032.1| KH-domain/beta-lactamase-domain protein [Sulfolobus solfataricus
98/2]
Length = 635
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 24/239 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 399 INKTLNKGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 457
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W ++V+E + + FK + + + P ++ AT GML GG ++E FK
Sbjct: 458 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDIAKGE-PSIILATSGMLNGGPAVEFFK 516
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSPH 164
AP N I Y GT+G K+ G +++ E +I++ + + FS H
Sbjct: 517 TMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSGH 575
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
+D + +++ ++ + P++VIL HGE + I+ + LG K Y PA +S+ +
Sbjct: 576 SDKRQLLNFLRNIEPKPKNVILNHGEASSIRAFANYIREDRLGYKPNIYTPAILDSLRV 634
>gi|15897661|ref|NP_342266.1| mRNA 3'-end processing factor [Sulfolobus solfataricus P2]
gi|6015715|emb|CAB57542.1| mRNA 3'-end polyadenylation factor [Sulfolobus solfataricus P2]
gi|13813930|gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
P2]
Length = 639
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 24/239 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 403 INKTLNKGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 461
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W ++V+E + + FK + + + P ++ AT GML GG ++E FK
Sbjct: 462 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDIAKGE-PSIILATSGMLNGGPAVEFFK 520
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSPH 164
AP N I Y GT+G K+ G +++ E +I++ + + FS H
Sbjct: 521 TMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
+D + +++ ++ + P++VIL HGE + I+ + LG K Y PA +S+ +
Sbjct: 580 SDKRQLLNFLRNIEPKPKNVILNHGEASSIRAFANYIREDRLGYKPNIYTPAILDSLRV 638
>gi|304315326|ref|YP_003850473.1| metal-dependent RNase [Methanothermobacter marburgensis str.
Marburg]
gi|302588785|gb|ADL59160.1| predicted metal-dependent RNase [Methanothermobacter marburgensis
str. Marburg]
Length = 636
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++ + GGK+LIP FA+GRAQEL I+L++Y + VP+Y G+ +AN +
Sbjct: 401 IYSTLKRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYID-GMIWEANAIHTARP 459
Query: 60 SWTSQKVKET-----YNAFD---FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ +++ +N F F V+ D R I P ++ +T GMLTGG SLE F
Sbjct: 460 EYLSKDLRDQIFHMGHNPFISEIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYF 519
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K N + GY G++G ++ G I L+ + +V+ I + FS H
Sbjct: 520 KWLCEDPKNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEEDKMRVYNVKMNIKTIEGFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+D + +M+ VK +S P+ ++L HG+ K L I I+ P N E++ I
Sbjct: 580 SDRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635
>gi|288931295|ref|YP_003435355.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
gi|288893543|gb|ADC65080.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDD-YWERMNLRVPIYFSAGLTIQANMYYKMLI 59
++K V+ GGKVLIPAFA+GR+QE+ I+L++ E+ VP+Y G+ +A +
Sbjct: 399 INKTVSRGGKVLIPAFAVGRSQEVMIVLEEAIREKKIPEVPVYLD-GMIYEATAIHTAYP 457
Query: 60 SWTSQKVK-----ETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEV 109
+ + ++ + N F ++ D + +I+ P V+ AT GML GG +E
Sbjct: 458 EYLNAHLRDLIFHQGVNPFISESFVRVDSASKRDEVINDKSPAVIIATSGMLNGGPVMEY 517
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQL---AFSPH 164
FK AP E N + GY GT+G ++ G + G + V + + FS H
Sbjct: 518 FKALAPDEKNTLVFVGYQAEGTLGRRIQKGWKEVPFPSNGKREVVYVNMEVVTVDGFSGH 577
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D + +++ VK LS P+ V+ VHG++ K L I I+ P N E++
Sbjct: 578 SDRRQLINYVKSLSSKPEKVLTVHGDEGKCIELASAIYKTFRIETRAPMNLETV 631
>gi|345018855|ref|YP_004821208.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344034198|gb|AEM79924.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 829
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 22/231 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKV+IPAFALGRAQE+ ++L + L+ +Y G+ + YK+ +
Sbjct: 217 VSSIINEGGKVIIPAFALGRAQEIILILKKAINKGILKTKVYVD-GMVREVCRVYKLNPN 275
Query: 61 WTSQKV-KETYNAFDFKNVHNFDRSLIDAPGP----------CVLFATPGMLTGGFSLEV 109
+ Q + K+ + D FD ++I P CV+ ++ GM+TGG S
Sbjct: 276 YLRQNLAKKIFKGNDI----FFDDNVIAVEKPEMREEIIKESCVILSSSGMITGGPSQWY 331
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ A E NLI + GY + G +L+ N I+++ +I ++C I + S
Sbjct: 332 VEKLAQDEKNLIAITGYQDEESPGRRLLDIMEESPENRKIKIDDKEILIKCSIDKFGLSA 391
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
H D I+ L L P+ + LVHG+ + L + +Q +L + Y P+N +
Sbjct: 392 HADMGEILALANSLYPKKIFLVHGDPEIINFLGKEVQKDLKSEVYIPSNGD 442
>gi|45358257|ref|NP_987814.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|44921014|emb|CAF30250.1| Beta-lactamase-like:KH domain [Methanococcus maripaludis S2]
Length = 635
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + +A GK +IP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 IAETIARKGKAIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N + R+++D+ P ++ T GML+GG S+E F
Sbjct: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ A E N I GY GT+G K+ G I L G + V +H L FS H
Sbjct: 519 KNLADDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
+D K ++ ++ L P ++ VHGE K
Sbjct: 579 SDRKQLIKYLRKLKPIPDRILTVHGEVSK 607
>gi|119576645|gb|EAW56241.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_h
[Homo sapiens]
Length = 123
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
VH+ V GGKVLIP FALGRAQELCILL+ +WERMNL+VPIYFS GLT +AN YYK+ I
Sbjct: 63 VHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIP 122
Query: 61 W 61
W
Sbjct: 123 W 123
>gi|340623726|ref|YP_004742179.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|339903994|gb|AEK19436.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 635
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + +A GK +IP F +GRAQEL ++L++ + + P+Y G+ +A +
Sbjct: 400 IAETIARKGKAIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPE 458
Query: 61 WTSQKVK-----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ ++ E N F FK V N + R+++D+ P ++ T GML+GG S+E F
Sbjct: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPH 164
K+ A E N I GY GT+G K+ G I L G + V +H L FS H
Sbjct: 519 KNLADDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGH 578
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPK 191
+D K ++ ++ L P ++ VHGE K
Sbjct: 579 SDRKQLIKYLRKLKPIPDRILTVHGEVSK 607
>gi|255524630|ref|ZP_05391583.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
gi|255511654|gb|EET87941.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
Length = 827
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
+++C A GK+LIPAFALGRAQE+ +++ + +++ + G+ N YK+
Sbjct: 216 INECEANRGKMLIPAFALGRAQEIILIIKKALNKKSIKNVKIYVDGMIKDINRVYKLNPL 275
Query: 58 -LISWTSQKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVFK 111
L + +K+ F N+ D+ +++ PC++ ++ GMLTGG+S +
Sbjct: 276 YLKNSLGKKILRGIEPFYDDNIIAVDKKEIREKILEDKEPCIIISSSGMLTGGYSQYYAE 335
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQLAFSPHTD 166
AP E I + GY + G KL++ E G I V+C++ ++ S H D
Sbjct: 336 KIAPMENGYIVITGYQDEESPGRKLLNLLEEEEDKKLELNGRSIPVKCKVEKVGLSAHGD 395
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
I L+ L+P ++ +VHG + + + + + SE+ + Y P
Sbjct: 396 KGEIKSLINLLTPNNIFMVHGNEEVVESFSKELLSEVRARVYAP 439
>gi|170291024|ref|YP_001737840.1| beta-lactamase domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175104|gb|ACB08157.1| beta-lactamase domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 624
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 23/228 (10%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GGKVLIPA A+GRAQE+ + L D +ER L +P+Y G+ + + + S V
Sbjct: 398 GGKVLIPALAVGRAQEIMLSLVDGFERGLLPDIPVYLD-GMIYDSTAIHSAYPDYLSNYV 456
Query: 67 KETYNAFD--------FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
+E+ D F V + +R + GP V+ A GMLTGG S++ K AP E
Sbjct: 457 RESVFKRDRDPFTEPHFNFVSSDERPDVTKGGPAVIIAPSGMLTGGPSVDYLKLLAPGEE 516
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTK----IDVRCQIHQL-AFSPHTDGKGIMDL 173
N I L Y GT+G +L G + L+ + I V+ + + FS H D + L
Sbjct: 517 NSIVLVSYQAEGTLGRRLRDGARELRLQDEEGYITIKVKADVRVIEGFSAHADK---VQL 573
Query: 174 VKFLS-----PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ +LS P V LVHGE+ KM I+ P E+
Sbjct: 574 LSYLSTMEPRPHRVFLVHGEEEKMREFGPLASKSASIRTVSPQIGETF 621
>gi|427405581|ref|ZP_18895786.1| hypothetical protein HMPREF9161_00146 [Selenomonas sp. F0473]
gi|425708422|gb|EKU71461.1| hypothetical protein HMPREF9161_00146 [Selenomonas sp. F0473]
Length = 536
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 35/242 (14%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG V+IP+FA+GR Q L W+ R++ +PI + L IQA + L ++ +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYRLWKEGRLDSDIPIIIDSPLAIQATRVF--LNNY--EN 293
Query: 66 VKETYNAFDFKN--VHNF-----------DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
E AF KN + +F R+L A G ++ + GM G L KH
Sbjct: 294 FDEETIAFFGKNGTIPSFPQVRIAESAADSRALNSAEGSAIILSASGMADAGRILHHLKH 353
Query: 113 --WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKG 169
W P L GY G++G +L+ G + + G +I V+ QI L FS H D
Sbjct: 354 NLWRPESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAQIQVLDGFSAHADAAQ 411
Query: 170 IMDLVKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP--------ANNESMCI 218
I+D ++ ++ P V LVHGE L++RI ELG++ Y P A S+ I
Sbjct: 412 IVDWMRSITAPRPAKVFLVHGEGQAQEALRQRINEELGLEVYAPFLGDAVTIAGRNSVLI 471
Query: 219 PS 220
PS
Sbjct: 472 PS 473
>gi|312127068|ref|YP_003991942.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777087|gb|ADQ06573.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
Length = 822
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
V + ++ GGKVLIPAFA+GRAQE+ ++L +Y ++ + ++ + T
Sbjct: 214 VAEVISQGGKVLIPAFAIGRAQEIILILRNYMKKRKVSFNVFIDGMVREVIRVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + + N K +I + PCV+ ++ GMLTGG S+
Sbjct: 274 LSSRYYKRVLKGEEIFLADNINVVSDKKQR---EEIISSSDPCVIISSSGMLTGGPSVFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLM------SGNPTIELEGTKIDVRCQIHQLAFSP 163
+ S+ LI + GY G KL+ I+L G + +V+C++ + S
Sbjct: 331 AEKIVQSQNALIAITGYQDEEAPGRKLLELAELPENERKIDLNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H+D I+ + L P+ VI HG + ++ + + EL P N E I
Sbjct: 391 HSDRDRILGFLATLRPRTVIFAHGSEDAISQISDMAVKELESNIIVPQNGEINSI 445
>gi|440783043|ref|ZP_20960854.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
gi|440219618|gb|ELP58829.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
Length = 828
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 14/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
+ +C GK+LIPAFALGRAQE+ +++ + ++ + G+ N YK+
Sbjct: 216 IRECEVNKGKILIPAFALGRAQEILLIIKKALNKNIIKNIKVYVDGMIKDINRVYKINPL 275
Query: 58 -LISWTSQKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVFK 111
L + +K+ + F N+ D +++ PCV+ ++ GMLTGG+S +
Sbjct: 276 YLKNSLGKKILKGVEPFYDDNIIPVDNKELRNKILEEKEPCVIVSSSGMLTGGYSQYYAE 335
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMS-----GNPTIELEGTKIDVRCQIHQLAFSPHTD 166
A E I + GY + G KL++ + IE+ G I V C + ++ S H+D
Sbjct: 336 KIASMENGYIIMTGYQDEESPGRKLLNLLDKDEDRVIEINGKLIPVNCNVEKVGLSAHSD 395
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
I L+ L+P ++ +VHG + + + + + E+ + Y P ES I
Sbjct: 396 KSEIKSLINLLTPNNIFMVHGNEEIVKSFTKELFKEVRGRVYAPECGESYDI 447
>gi|222529916|ref|YP_002573798.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456763|gb|ACM61025.1| beta-lactamase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 821
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
V + ++ GGKVLIPAFA+GRAQE+ ++L +Y ++ + ++ + T
Sbjct: 214 VAEVISQGGKVLIPAFAIGRAQEIILILRNYMKKRKVSFNVFIDGMVREVIRVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + N K +I + PCV+ ++ GMLTGG S+
Sbjct: 274 LSSRYYKRVLKGEEIFFADNINVVSDKKQR---EEIISSSDPCVIISSSGMLTGGPSVFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ S+ LI + GY G KL+ IEL G + +V+C++ + S
Sbjct: 331 AEKIVQSQNALIAITGYQDEEAPGRKLLELAELPENERKIELNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
H+D I+ + L P+ VI HG + + + + EL P N E I
Sbjct: 391 HSDRDRILGFLATLRPRTVIFAHGSEDAILQISDMAVKELEANIIVPQNGEINSI 445
>gi|334346620|ref|YP_004556257.1| RNA-metabolising metallo-beta-lactamase [Sphingobium
chlorophenolicum L-1]
gi|334104329|gb|AEG51751.1| RNA-metabolising metallo-beta-lactamase [Sphingobium
chlorophenolicum L-1]
Length = 482
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 101/218 (46%), Gaps = 7/218 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V +CV GG V+IPAFA+GR Q L + LR +PI+ + + I A+ +
Sbjct: 257 VERCVERGGTVVIPAFAVGRVQSLLYHFSRLRAQGRLRDIPIFLDSPMAINASGLMCDFM 316
Query: 60 SWTSQKVKETYNAFDFKN-VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
E A + V + S L P P V+ + GM TGG L K +AP
Sbjct: 317 DEHRLARAECEAACSVAHYVREVEESKELTANPTPKVIISASGMATGGRVLHHLKRFAPD 376
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
NLI G+ AGT G ++ G TI++ G I V ++ L S H D +M +
Sbjct: 377 GKNLILFSGFQAAGTRGAAMIGGARTIKIHGEYIPVEAEVANLTMLSAHADSDELMRWLG 436
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
L +P+HV + HGE L +R+ ELG C PA
Sbjct: 437 SLHEAPRHVYVTHGEPTGAQVLAKRVSEELGWACSVPA 474
>gi|311748141|ref|ZP_07721926.1| metallo-beta-lactamase family protein [Algoriphagus sp. PR1]
gi|311302752|gb|EAZ80876.2| metallo-beta-lactamase family protein [Algoriphagus sp. PR1]
Length = 466
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 12/222 (5%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQAN---MYYKMLISWTSQ 64
G V+IPAFALGR Q + L E+ + +VPI+ + + I A + YK T+
Sbjct: 241 GLVIIPAFALGRTQLVMYYLYQLMEKGKIPKVPIFLDSPMAINATKLYLDYKNDHQLTAC 300
Query: 65 KVKETYNAFDFKNVHNF-----DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMN 119
+E ++ FD +H F RSL + G ++ + GM TGG L H P+E N
Sbjct: 301 LEEEDHHLFDHPQLHYFRKQEESRSLNEYRGNAIIISASGMATGGRVLHHLFHHLPNEKN 360
Query: 120 LITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFLS 178
+ GY GT G +L+ G + + G ++ V+ +I+Q+ S H D + +MD + +
Sbjct: 361 SVIFVGYQAYGTRGRRLVDGENEVRIYGREVPVKAKIYQIDGLSAHADQEELMDWAEGFT 420
Query: 179 --PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
P+ ++HGE+ L +++ ELG + P ES +
Sbjct: 421 DRPKITFIIHGEEQSATVLGQKLHDELGWQTVIPQYLESFML 462
>gi|94497068|ref|ZP_01303641.1| hypothetical protein SKA58_18545 [Sphingomonas sp. SKA58]
gi|347430605|ref|YP_004831213.1| ribonuclease [Sphingobium sp. SYK-6]
gi|390166166|ref|ZP_10218432.1| RNA-metabolising metallo-beta-lactamase [Sphingobium indicum B90A]
gi|94423440|gb|EAT08468.1| hypothetical protein SKA58_18545 [Sphingomonas sp. SKA58]
gi|345139073|dbj|BAK68681.1| ribonuclease [Sphingobium sp. SYK-6]
gi|389590967|gb|EIM68949.1| RNA-metabolising metallo-beta-lactamase [Sphingobium indicum B90A]
Length = 471
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 101/218 (46%), Gaps = 7/218 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V +CV GG V+IPAFA+GR Q L + LR +PI+ + + I A+ +
Sbjct: 246 VERCVERGGTVVIPAFAVGRVQSLLYHFSRLRAQGRLRDIPIFLDSPMAINASGLMCDFM 305
Query: 60 SWTSQKVKETYNAFDFKN-VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
E A + V + S L P P V+ + GM TGG L K +AP
Sbjct: 306 DEHRLARAECEAACSVAHYVREVEESKELTANPTPKVIISASGMATGGRVLHHLKRFAPD 365
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
NLI G+ AGT G ++ G TI++ G I V ++ L S H D +M +
Sbjct: 366 GKNLILFSGFQAAGTRGAAMIGGARTIKIHGEYIPVEAEVANLTMLSAHADSDELMRWLG 425
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
L +P+HV + HGE L +R+ ELG C PA
Sbjct: 426 SLHEAPRHVYVTHGEPTGAQVLAKRVSEELGWACSVPA 463
>gi|169824737|ref|YP_001692348.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
gi|167831542|dbj|BAG08458.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
Length = 539
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-----RMNLRVPIYFSAGLTIQANMYY 55
+ K A GG V+IP+FA+GR QE+ L+ Y++ +VP+Y + + ++A +
Sbjct: 231 IEKVSAKGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAF 290
Query: 56 KMLISWTSQKVKETY----NAFDFKNVH---NFDRS--LIDAPGPCVLFATPGMLTGGFS 106
+QK K+ N F+F+N+H N D S L P V+ ++ GM T G
Sbjct: 291 MENTDLFNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNSVKFPRVIISSSGMATAGRV 350
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHT 165
KH E N + GY G++G L+ G ++L G I V +I L FS H
Sbjct: 351 RHHLKHNLWDEKNAVVFVGYQAQGSLGRILLDGVDEVKLFGETIKVNAKIFNLGGFSGHA 410
Query: 166 DGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
D +M+ V + P+ + + HGE TL + + + ++ P
Sbjct: 411 DQNNLMEFVDNMKIKPKKIFITHGENDGAETLSKLLIEKYNVEAIIP 457
>gi|323139242|ref|ZP_08074297.1| RNA-metabolising metallo-beta-lactamase [Methylocystis sp. ATCC
49242]
gi|322395540|gb|EFX98086.1| RNA-metabolising metallo-beta-lactamase [Methylocystis sp. ATCC
49242]
Length = 452
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 7/222 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDY-WERMNLRVPIYFSAGLTIQANMYYKMLI 59
V++ A GG V+IPAFA+GRAQ L L+ R + VPIY ++ + I A
Sbjct: 227 VNRTAARGGTVIIPAFAVGRAQTLLFHLERLKSSRRLVDVPIYLNSPMAIDATETLCRRA 286
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
T ++ + + + + +++ + P V+ + GM TGG L K +AP
Sbjct: 287 DDQRLTREEWRRACSVARYVESVDESKAINEDDAPKVIISASGMATGGRVLHHLKKFAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
N I G+ AGT G L+ G ++++ G + VR ++ L+ S H D +M +
Sbjct: 347 PRNTILFAGFQAAGTRGAALVGGAQSVKIHGEYVPVRAEVDNLSMLSAHADANELMRWLG 406
Query: 176 FLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
P+ L HGE TL+ RIQ ELG +C+ P E+
Sbjct: 407 NFRRPPRMTFLTHGEPTASDTLRLRIQDELGWRCHVPEMMET 448
>gi|336477059|ref|YP_004616200.1| KH-domain/beta-lactamase-domain-containing protein [Methanosalsum
zhilinae DSM 4017]
gi|335930440|gb|AEH60981.1| KH-domain/beta-lactamase-domain protein [Methanosalsum zhilinae DSM
4017]
Length = 636
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V + + G VLIPAFA+GR+QE+ I+L++ + + +P+Y G+ +A +
Sbjct: 401 VKRTIDRNGIVLIPAFAVGRSQEVMIVLEEAIRKGIISDIPVYLD-GMIWEATAIHATYP 459
Query: 60 SWTS--------QKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + QK + + + +F++V + R++ID P PCV+ AT GM+ G L+
Sbjct: 460 EYLNNDLRKLIFQKGQNPFLSENFRSVDSNELRRNIIDDPHPCVILATAGMMNAGPILDY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG------TKIDVRCQIHQLAFSP 163
FK +AP E N + GY GT+G ++ G + L K+++ +I FS
Sbjct: 520 FKAFAPDERNTLVFVGYQADGTMGRRIQKGWKEVPLPAKNGSDMVKMNMEVEIVD-GFSG 578
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEK 189
H+D K +MD VK + P+ + +HGE+
Sbjct: 579 HSDRKQLMDYVKKMKPRPERIFTMHGEE 606
>gi|159111399|ref|XP_001705931.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434022|gb|EDO78257.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 757
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 20/262 (7%)
Query: 5 VAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLRVPIYFSAGLTIQANMYYKMLISW 61
V G VL+P F++GR QEL +L +YW E+ RV IY+ + + A Y +
Sbjct: 266 VKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARVTIYYVSAIADNARQLYSKDKGF 325
Query: 62 TSQKVKETYNAFDFKNVHNFDRSLI------DAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
D + DR + + P V+F TPGML G S E++
Sbjct: 326 LRHG---DTGLSDIQTGKRKDRIIYTKTRPKNPKKPYVMFCTPGMLQSGVSKEMYNELCG 382
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVK 175
S NL+ + GY T+ KL+ G P G D + +I +L+FS H+D +D+++
Sbjct: 383 SPDNLLLVTGYATQDTLLYKLLEGKP----PGGYADAKMRIEELSFSAHSDYNQTLDVLR 438
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRS 235
P++V +HG + +++LK I +E + + S HY + G + F +
Sbjct: 439 KTRPRNVAFIHGSEKSISSLKRTIANETRVNFSEGGKEADKEEISFHYPRNGETVTF--A 496
Query: 236 CMNPNFQYLK--SGSEEKSVSG 255
NP +K +G+E+ + +G
Sbjct: 497 FTNPVQLSIKVDTGAEDTAQTG 518
>gi|395219813|ref|ZP_10402572.1| metallo-beta-lactamase superfamily protein [Pontibacter sp.
BAB1700]
gi|394453804|gb|EJF08613.1| metallo-beta-lactamase superfamily protein [Pontibacter sp.
BAB1700]
Length = 459
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 11/216 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V+ V GG ++IP+FA+ RAQEL ++L+ E ++ +PIY + I Y
Sbjct: 234 VNHTVEKGGVLVIPSFAVERAQELLLILNTLREDRSIPPIPIYLDTPMGIDVTELYLHHR 293
Query: 60 SWTSQKVKETYNAFDFKNVH---NFDRSL--IDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
W S E NVH +F+++L +D PGP ++ A GM+TGG L +
Sbjct: 294 DWHSLSDAECRTMM--HNVHVIRDFEQTLRVLDKPGPKIVIAGSGMVTGGRVLYYLQRLL 351
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
N + L GY GT G+ L+SG I+++G VR +I Q+ + S H D ++
Sbjct: 352 DDAKNTVLLVGYQAPGTRGSLLLSGATEIKMQGNYYPVRAEIQQISSLSAHGDQAELLWW 411
Query: 174 VKFL--SPQHVILVHGEKPKMATLKERIQSELGIKC 207
+ L +P V L HGE + L+ +I LG C
Sbjct: 412 ISHLKNAPMQVYLNHGEAQALEALRLKITDTLGWGC 447
>gi|385775961|ref|YP_005648529.1| beta-lactamase [Sulfolobus islandicus REY15A]
gi|323474709|gb|ADX85315.1| beta-lactamase domain protein [Sulfolobus islandicus REY15A]
Length = 638
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 26/240 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 402 INKTLNRGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYLT-GLVDEVTAIHNAYP 460
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPG-PCVLFATPGMLTGGFSLEVF 110
W ++V+E + + FK + + + A G P ++ AT GML GG ++E F
Sbjct: 461 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDI--AKGEPSIILATSGMLNGGPAVEFF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSP 163
K AP N I Y GT+G K+ G +++ E +I++ + + FS
Sbjct: 519 KTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSG 577
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
H+D + + + ++ + P+++IL HGE + I+ + LG K Y PA +S+ +
Sbjct: 578 HSDRRQLFNFLRTIEPKPKNIILNHGEASAIKAFANYIRDDRLGYKPFIYTPAILDSLRV 637
>gi|146296048|ref|YP_001179819.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409624|gb|ABP66628.1| beta-lactamase domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 821
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 16/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYK---- 56
+++ ++ GGKVLIPAFA+GRAQE+ ++L +Y ++ + + F G+ + YK
Sbjct: 214 IYEFISKGGKVLIPAFAIGRAQEIILILRNYMKKKKVEFNV-FIDGMVREVIRVYKNNPT 272
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
L S +KV + F N+ ++ + PCV+ ++ GMLTGG S+ +
Sbjct: 273 FLSSRYYKKVLKGEEIFLSDNIDIITDKKQREEIMSSSDPCVIISSSGMLTGGPSVFYAE 332
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSPHT 165
++ LI + GY + G KL+ IEL G + +V+C++ + S H
Sbjct: 333 KLVENQNALIAITGYQDEESPGRKLLELTELPESERKIELNGKEYEVKCKVEKYGLSAHA 392
Query: 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D I+ + L P+ V+ HG + ++ L + E+ P N E I
Sbjct: 393 DRDSILGFLAMLKPKTVVFAHGSEEAISQLSDMAIKEIESAVLIPQNGEMNTI 445
>gi|150400487|ref|YP_001324253.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013190|gb|ABR55641.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 635
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 19/201 (9%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVK- 67
GK++IP F +GRAQEL ++L++ + + P+Y G+ +A + + S+ ++
Sbjct: 408 GKIIIPVFGIGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPEYLSKNMRN 466
Query: 68 ----ETYNAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
E N F FK V N + R++ID+ PC++ T GML+GG S+E FK A E
Sbjct: 467 RIFHEGDNPFLSEVFKKVRNTNNRRNIIDSDEPCIILTTSGMLSGGPSVEYFKSLAHDER 526
Query: 119 NLITLPGYCLAGTIGNKLMSG---NPTIELEGTK--IDVRCQIHQL-AFSPHTDGKGIMD 172
N I GY GT+G K+ G P + G + V +H FS H+D + ++
Sbjct: 527 NAIVFVGYQSEGTMGRKIQRGWNEIPVMNRNGKSRAVKVNLSVHTFEGFSGHSDRRQLIK 586
Query: 173 LVKFLS--PQHVILVHGEKPK 191
++ L P ++ VHGE K
Sbjct: 587 YLRKLKPMPDRILTVHGESSK 607
>gi|326391500|ref|ZP_08213034.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992476|gb|EGD50934.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
ethanolicus JW 200]
Length = 542
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 24/249 (9%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCI-------LLDDYWERMNLRVPIYFSAGLTIQANMYY 55
K V GG V+IP+FA+GR QEL L D E +N VP+Y + L +
Sbjct: 235 KTVKRGGNVIIPSFAVGRTQELLYELHKNRELYKDEIEFLN-NVPVYVDSPLATSITDVF 293
Query: 56 ----KMLISWTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFS 106
+ L S + +K DF N+H ++L + P ++ + GM G
Sbjct: 294 TKHPEYLDSEAQEYIKRGDLPLDFPNLHFTHSVEESKALNEIKTPVIIISASGMCEAGRI 353
Query: 107 LEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSP 163
KH W P + GY GT+G KL+ G +++ G I V+ +I + +FS
Sbjct: 354 KHHLKHNLWRPE--CTVLFVGYQAKGTLGRKLLEGEKNVKIFGEDISVKAEIEYIESFSG 411
Query: 164 HTDGKGIMD-LVKFLS-PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
H D KGI+D L +F P+ + +VHGE L ++I+++LGI+ P+ ++
Sbjct: 412 HADQKGILDWLSQFTDKPRKIFIVHGEDEAQEELADKIENQLGIETLIPSRYDTYNFEED 471
Query: 222 HYVKAGASD 230
A A D
Sbjct: 472 KLFTAEAED 480
>gi|392940509|ref|ZP_10306153.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacter siderophilus SR4]
gi|392292259|gb|EIW00703.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacter siderophilus SR4]
Length = 548
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 24/249 (9%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCI-------LLDDYWERMNLRVPIYFSAGLTIQANMYY 55
K V GG V+IP+FA+GR QEL L D E +N VP+Y + L +
Sbjct: 241 KTVKRGGNVIIPSFAVGRTQELLYELHKNRELYKDEIEFLN-NVPVYVDSPLATSITDVF 299
Query: 56 ----KMLISWTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFS 106
+ L S + +K DF N+H ++L + P ++ + GM G
Sbjct: 300 TKHPEYLDSEAQEYIKRGDLPLDFPNLHFTHSVEESKALNEIKTPVIIISASGMCEAGRI 359
Query: 107 LEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSP 163
KH W P + GY GT+G KL+ G +++ G I V+ +I + +FS
Sbjct: 360 KHHLKHNLWRPE--CTVLFVGYQAKGTLGRKLLEGEKNVKIFGEDISVKAEIEYIESFSG 417
Query: 164 HTDGKGIMD-LVKFLS-PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
H D KGI+D L +F P+ + +VHGE L ++I+++LGI+ P+ ++
Sbjct: 418 HADQKGILDWLSQFTDKPRKIFIVHGEDEAQKELADKIENQLGIETLIPSRYDTYNFEED 477
Query: 222 HYVKAGASD 230
A A D
Sbjct: 478 KLFTAEAED 486
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
+H ++ GG+VLIPAFALGRAQEL ++LD+YW +PIY+++ L + Y+
Sbjct: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTY 297
Query: 59 ISWTSQKVKETY---NAFDFKN------VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
I+ +++++ + N FDFK+ + NF+ GP V+ A+P L G S ++
Sbjct: 298 INSMNERIRNQFANSNPFDFKHISPLKSIENFNDV-----GPSVVMASPSGLQSGLSRQL 352
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS 138
F W + N +PGY + GT+ +++
Sbjct: 353 FDMWCSDKKNACVIPGYVVEGTLAKTIIN 381
>gi|390933400|ref|YP_006390905.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568901|gb|AFK85306.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 537
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 18/233 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELC--ILLDDYWERMNL----RVPIYFSAGLTIQANMY 54
+ K ++ GG V+IP+FA+GR QEL I D+ + + +VP+Y + L
Sbjct: 233 IKKTISRGGNVIIPSFAVGRTQELLYEIHKDEELYKNEIEYISKVPVYVDSPLATSVTSV 292
Query: 55 YKMLISWTSQKVKETYNA----FDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGF 105
++ + + + + DF N+H ++L D P ++ + GM G
Sbjct: 293 FRKHLDYFDDEARSYVENGDYPLDFPNLHFTHSAEESKALNDIKEPVIIISASGMCEAGR 352
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH + I GY GT+G +++ G T+ + G +I V +I + +FS H
Sbjct: 353 IKHHLKHNLWRSDSTIVFVGYQAKGTLGRRILDGEKTVNIFGEEITVNAEIQNIESFSGH 412
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
D KGIMD + + P+ + +VHGE L ++I+ EL I+ P+ ++
Sbjct: 413 ADQKGIMDWISSFTKKPKKIFIVHGEDSAQKVLSKKIKDELNIETVIPSKYDT 465
>gi|340545979|gb|AEK51788.1| cleavage and polyadenylation specific factor 3 [Heteronotia binoei]
gi|402696941|gb|AFQ90659.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Malaclemys terrapin]
gi|402696943|gb|AFQ90660.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Testudo hermanni]
Length = 220
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 84 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 143
Query: 59 ISWTSQKVKETYNA---FDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F FK++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 144 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 203
Query: 115 PSEMNLITLPGYCLAGT 131
+ N + + GYC+ GT
Sbjct: 204 TDKRNGVIIAGYCVEGT 220
>gi|294010463|ref|YP_003543923.1| putative exonuclease [Sphingobium japonicum UT26S]
gi|292673793|dbj|BAI95311.1| putative exonuclease [Sphingobium japonicum UT26S]
Length = 486
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 101/218 (46%), Gaps = 7/218 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V +CV GG V+IPAFA+GR Q L + LR +PI+ + + I A+ +
Sbjct: 261 VERCVERGGTVVIPAFAVGRVQSLLYHFSRLRAQGRLRDIPIFLDSPMAINASGLMCDFM 320
Query: 60 SWTSQKVKETYNAFDFKN-VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
E A + V + S L P P V+ + GM TGG L K +AP
Sbjct: 321 DEHRLARAECEAACSVAHYVREVEESKELTANPAPKVIISASGMATGGRVLHHLKRFAPD 380
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
NLI G+ AGT G ++ G TI++ G I V ++ L S H D +M +
Sbjct: 381 GKNLILFSGFQAAGTRGAAMIGGARTIKIHGEYIPVEAEVANLTMLSAHADSDELMRWLG 440
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
L +P+HV + HGE L +R+ +LG C PA
Sbjct: 441 SLHEAPRHVYVTHGEPTGAHVLAKRVSEDLGWACSVPA 478
>gi|374636870|ref|ZP_09708413.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557613|gb|EHP84014.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 419
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GRAQE+ +++++Y L+ VP+Y L I A Y +
Sbjct: 201 IAETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLKDVPVYVDGSL-IHATGIYMSYL 259
Query: 60 SWTSQKVKETY-NAFD-FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
W + K+K N + F + D + + PC++ +T GM+ GG L+ + S
Sbjct: 260 DWLNPKLKNMVENRINPFGELKKADNGVFNKE-PCIIVSTSGMVQGGPVLQ-YLSLLKSP 317
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
N + L GY GT+G L G I KI VR ++ ++ FS H D ++ +K +
Sbjct: 318 KNKLILTGYQAEGTLGRALEEGVEEITPFKNKIPVRGKVVKIEFSAHGDYNSLVRYIKKI 377
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDPAN 212
+P+ +VHGE+ + + I L I + P N
Sbjct: 378 PTPKKAFVVHGERYQALSFAMTIWKSLKIPTFAPVN 413
>gi|385773323|ref|YP_005645889.1| beta-lactamase [Sulfolobus islandicus HVE10/4]
gi|323477437|gb|ADX82675.1| beta-lactamase domain protein [Sulfolobus islandicus HVE10/4]
Length = 638
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 26/240 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 402 INKTLNRGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 460
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPG-PCVLFATPGMLTGGFSLEVF 110
W ++V+E + + FK + + + A G P ++ AT GML GG ++E F
Sbjct: 461 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDI--AKGEPSIILATSGMLNGGPAVEFF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSP 163
K AP N I Y GT+G K+ G +++ E +I++ + + FS
Sbjct: 519 KTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSG 577
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
H+D + + + ++ + P+++IL HGE + I+ + LG K Y PA +S+ +
Sbjct: 578 HSDRRQLFNFLRTIEPKPKNIILNHGEASAIKAFANYIRDDRLGYKPFIYTPAILDSLRV 637
>gi|424811901|ref|ZP_18237141.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756123|gb|EGQ39706.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 619
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
+ +A GGKV++PAFA+GR+QE+ ++ D + +Y G+ AN + +
Sbjct: 393 QTLAKGGKVIVPAFAVGRSQEILGVMADELSHEHFDATVYLD-GMIRDANALHTAYPEYL 451
Query: 63 SQKVKE---------TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S+K+++ T + + H + + P CV+ T GM+TGG + K
Sbjct: 452 SKKIQKKIFAGNSPFTDDQIRSISSHEERKQAFEDPS-CVVLTTSGMVTGGPIMSYLKKE 510
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMD 172
A N + GY GT+G ++++G +E++G +++V + ++ FS H+D + I D
Sbjct: 511 ASRSDNTLIFVGYQADGTLGRRILNGANQVEIDGERVEVDMNVENVSGFSAHSDREQIKD 570
Query: 173 LVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
V+ L + HV HGE K L I L + P N E
Sbjct: 571 FVRSLDGRADHVFCNHGETKKCFQLASSIYKSLNVSTSAPDNLE 614
>gi|296109715|ref|YP_003616664.1| RNA-metabolising metallo-beta-lactamase [methanocaldococcus
infernus ME]
gi|295434529|gb|ADG13700.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus
infernus ME]
Length = 419
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 6/214 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + + GGKV+IP FA+GRAQE+ ++L++Y L I F+ G I A Y
Sbjct: 200 VKETIERGGKVIIPVFAVGRAQEILLVLNNYIRSGELEAKI-FTDGSLIHATSIYLSYTD 258
Query: 61 WTSQKVKETYNAF--DFKNVHNFDRSLI-DAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
W + K+K F NV D S I PCV+ +T GM+ GG L+ + +
Sbjct: 259 WLNPKLKNLIETGINPFGNVEKADESRIFKKDEPCVIVSTSGMVQGGPVLKYLRLLKDPK 318
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFL 177
LI L GY GT+G L G I+ KI +R ++ ++ FS H D ++ +K +
Sbjct: 319 NKLI-LTGYQAEGTLGRALEEGIKEIKPFKNKIPIRGEVVKIEFSAHGDYNSLVRYIKKI 377
Query: 178 -SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
P+ I++HGE+ + I L I Y P
Sbjct: 378 PKPEKAIVMHGERYQSLAFAMTIWKNLKIPAYVP 411
>gi|227827653|ref|YP_002829433.1| beta-lactamase [Sulfolobus islandicus M.14.25]
gi|229584857|ref|YP_002843359.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.27]
gi|238619821|ref|YP_002914647.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.4]
gi|227459449|gb|ACP38135.1| beta-lactamase domain protein [Sulfolobus islandicus M.14.25]
gi|228019907|gb|ACP55314.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.27]
gi|238380891|gb|ACR41979.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.4]
Length = 638
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 26/240 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 402 INKTLNRGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 460
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPG-PCVLFATPGMLTGGFSLEVF 110
W ++V+E + + FK + + + A G P ++ AT GML GG ++E F
Sbjct: 461 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDI--AKGEPSIILATSGMLNGGPAVEFF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSP 163
K AP N I Y GT+G K+ G +++ E +I++ + + FS
Sbjct: 519 KTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSG 577
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
H+D + + + ++ + P+++IL HGE + I+ + LG K Y PA +S+ +
Sbjct: 578 HSDRRQLFNFLRTIEPKPKNIILNHGEASAIKAFANYIRDDRLGYKPFIYTPAILDSLRV 637
>gi|229579166|ref|YP_002837564.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582079|ref|YP_002840478.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284997854|ref|YP_003419621.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|228009880|gb|ACP45642.1| beta-lactamase domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012795|gb|ACP48556.1| beta-lactamase domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284445749|gb|ADB87251.1| beta-lactamase domain protein [Sulfolobus islandicus L.D.8.5]
Length = 638
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 26/240 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 402 INKTLNRGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 460
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPG-PCVLFATPGMLTGGFSLEVF 110
W ++V+E + + FK + + + A G P ++ AT GML GG ++E F
Sbjct: 461 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDI--AKGEPSIILATSGMLNGGPAVEFF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSP 163
K AP N I Y GT+G K+ G +++ E +I++ + + FS
Sbjct: 519 KTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSG 577
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
H+D + + + ++ + P+++IL HGE + I+ + LG K Y PA +S+ +
Sbjct: 578 HSDRRQLFNFLRTIEPKPKNIILNHGEASAIKAFANYIRDDRLGYKPFIYTPAILDSLRV 637
>gi|385806123|ref|YP_005842521.1| beta-lactamase [Fervidicoccus fontis Kam940]
gi|383795986|gb|AFH43069.1| beta-lactamase domain protein [Fervidicoccus fontis Kam940]
Length = 619
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 20/218 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLT--IQANMYYKM 57
+ K V GGK+L+P ++GR QE+ ++L + + + L+ +P+Y +T + +Y
Sbjct: 378 IRKTVQRGGKILVPVMSVGRGQEIMLILSEAFSKGQLQDIPVYIEGMVTEVTALHTHYPE 437
Query: 58 LISWTSQK-VKETYNAFDFKN---VHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L+S + +K + N F KN V + D RS PGPC++ AT GML GG S+E K
Sbjct: 438 LMSQSVEKAIHLGENPFMNKNFVVVQSKDKRSEALEPGPCIILATSGMLNGGPSVEYLKS 497
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG-------NPTIELEGTKIDVRCQIHQL-AFSPH 164
A N + Y + GT+G K+ G NP ++E KI++ +IH + FS H
Sbjct: 498 LAEDPKNSLIFVSYQVEGTLGRKIKDGQKELTFLNPDGKIETIKINM--EIHSIEGFSGH 555
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQ 200
+D ++ ++ + P+++IL HGE + +L I+
Sbjct: 556 SDKNELISFIENIEPKPKNIILNHGELSAIMSLYNSIE 593
>gi|227830349|ref|YP_002832129.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|227456797|gb|ACP35484.1| beta-lactamase domain protein [Sulfolobus islandicus L.S.2.15]
Length = 638
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 26/240 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D+ ++ + VP+Y + GL + +
Sbjct: 402 INKTLNRGGKVLIPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVT-GLVDEVTAIHNAYP 460
Query: 60 SWTSQKVKET--------YNAFDFKNVHNFDRSLIDAPG-PCVLFATPGMLTGGFSLEVF 110
W ++V+E + + FK + + + A G P ++ AT GML GG ++E F
Sbjct: 461 EWLGREVREEILYKDENPFTSEHFKRIEGYKEDI--AKGEPSIILATSGMLNGGPAVEFF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSP 163
K AP N I Y GT+G K+ G +++ E +I++ + + FS
Sbjct: 519 KTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVE-GFSG 577
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE-LGIK--CYDPANNESMCI 218
H+D + + + ++ + P+++IL HGE + I+ + LG K Y PA +S+ +
Sbjct: 578 HSDRRQLFNFLRTIEPKPKNIILNHGEASAIKAFANYIRDDRLGYKPFIYTPAILDSLRV 637
>gi|332796323|ref|YP_004457823.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694058|gb|AEE93525.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 638
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 29/244 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLRVPIYFSAGLTIQANMYYKMLI 59
++ + GGKVLIP A+GR QE+ +++++ + ++ VP+Y + GL + +
Sbjct: 397 INNTINRGGKVLIPVLAVGRGQEMMLVINNALKNKLIPEVPVYVT-GLFDEVTAIHTAYP 455
Query: 60 SWTSQKVKETY-----NAF---DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W S++V++ N F FK + + R I P ++ AT GML GG ++E FK
Sbjct: 456 EWLSREVRDAILYRDENPFVSDQFKRIEGY-REDIAQGEPSIILATSGMLNGGPAVEFFK 514
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSPH 164
AP N I Y GT+G K+ G +++ E +I++ ++ FS H
Sbjct: 515 AMAPDSKNSIVFVSYQAEGTLGRKVRDGAKEVQIIGRDGRVENIQINMEVKVVD-GFSGH 573
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERI-----QSELGIK---CYDPANNE 214
+D + ++ + L+ P+++IL HGE M T K I + LGIK Y PA +
Sbjct: 574 SDRRQLLKFLHDLTPKPKNIILDHGEYNSMMTFKRLIDNPKEKERLGIKGANIYTPAILD 633
Query: 215 SMCI 218
S+ +
Sbjct: 634 SLRV 637
>gi|330825922|ref|YP_004389225.1| beta-lactamase domain-containing protein [Alicycliphilus
denitrificans K601]
gi|329311294|gb|AEB85709.1| beta-lactamase domain protein [Alicycliphilus denitrificans K601]
Length = 452
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 7/223 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+++ A GG V+IPAFA+GRAQ L + ER + +P+Y + + I A Y
Sbjct: 227 INRTAARGGTVVIPAFAVGRAQTLLYAIHLLKERGVIHHLPVYLDSPMAIDATRIYHAHR 286
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
T + + +A N ++L GP V+ + GM TGG + K +AP
Sbjct: 287 DEHRLTPDQCEAMCHAATIVNKPADSKALSARRGPMVIISASGMATGGRVVHHLKSFAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I GY GT G ++ G ++ + G ++ +R ++ L + S H D I+ ++
Sbjct: 347 HRNTILFAGYQAGGTRGATILQGAASVRIHGEEVPIRAEVASLGSLSAHADAGEILQWMR 406
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+PQ + HGE ++ RI+ ELG C P E++
Sbjct: 407 GFDAAPQMTFVTHGEPSAADAMRSRIEHELGWPCRVPDYLETV 449
>gi|121605197|ref|YP_982526.1| beta-lactamase domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120594166|gb|ABM37605.1| beta-lactamase domain protein [Polaromonas naphthalenivorans CJ2]
Length = 452
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQEL--CILLDDYWERMNLRVPIYFSAGLTIQANMYY--- 55
+++ A GG V+IPAFA+GRAQ L CI L ++ +P+Y ++ + A Y
Sbjct: 227 INRTAARGGVVVIPAFAVGRAQSLLYCIHLLKSQGVIH-DLPVYLNSPMAANATHVYERH 285
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ + T+ + + ++ + R L GP V+ + GM TGG L K +AP
Sbjct: 286 RAELRLTAAQCRAMAHSAQIVHTPEESRLLNARRGPMVIISASGMATGGRVLHHIKAFAP 345
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
+ N + GY GT G + G T+ + G ++ +R ++ L + S H DG I++ +
Sbjct: 346 DKRNTLLFAGYQAGGTRGATIAGGASTVRIFGEEVPIRAEVAMLSSLSAHADGAEIIEWL 405
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ +P+ + HGE +++RI+ EL C+ P ES+ +
Sbjct: 406 RNFKSAPRQTFITHGEPAAADAMRQRIERELHWNCHMPYYLESVML 451
>gi|398802518|ref|ZP_10561726.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Polaromonas sp. CF318]
gi|398099601|gb|EJL89857.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Polaromonas sp. CF318]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQEL--CILLDDYWERMNLRVPIYFSAGLTIQANMYY--- 55
+ + A GG V+IPAFA+GRAQ L C+ + + +P+Y ++ + +A Y
Sbjct: 227 IKRTAARGGVVVIPAFAVGRAQSLLHCVQVLKAQGVIQRSLPVYLNSPMAAKATQVYLKH 286
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K + TS + + + R L GP V+ A GM TGG + K +AP
Sbjct: 287 KDELRLTSAECEAMAHTAHIVESPEESRLLNAKHGPMVIIAASGMATGGRVVHHLKAFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
+ N I G+ GT G + G PT+ + G ++ VR ++ L S H+D IM +
Sbjct: 347 DKRNTIVFAGFQPGGTRGALIAGGAPTVRIHGQEVPVRAEVAMLDDLSAHSDAAEIMGWL 406
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ +P+ + HGE +++RI+ EL C P E+ +
Sbjct: 407 RGFKSAPRQAFITHGEPAAADAMRQRIERELHWSCKIPCYLETAAL 452
>gi|376261356|ref|YP_005148076.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Clostridium sp. BNL1100]
gi|373945350|gb|AEY66271.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Clostridium sp. BNL1100]
Length = 543
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 125/274 (45%), Gaps = 22/274 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILL----DDYWERMN--LRVPIYFSAGLTIQANMY 54
+ + ++ GG V+IP+FA+GR QEL L D + +++N L VP+Y + L A
Sbjct: 235 ISETISKGGNVVIPSFAVGRTQELIYDLNKHMDVFGDKVNEILNVPVYVDSPLATSATQI 294
Query: 55 YKMLISWTSQKVKETY----NAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGF 105
++ + ++ K N DF ++ R L + ++ + GM G
Sbjct: 295 FRENLDCFDEEAKAYIANGDNPLDFPSLKFTQSPEESRKLNEKAESMIIISASGMCDAGR 354
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH + + I GY GT+G K+ G ++L G +I V +I + FS H
Sbjct: 355 VKHHLKHNLWRKESTILFVGYQAEGTLGRKIQDGAQKVKLFGEEISVNARIESIDGFSGH 414
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS-- 220
D G++ ++ + P+++ +VHGE+ A+ + I ELG++C P+ ES I
Sbjct: 415 ADKAGLLSWIRSIGRKPKNIFVVHGEQGVAASFAQTITDELGLQCIVPSRGESYVISGGS 474
Query: 221 --THYVKAGASDAFIRSCMNPNFQYLKSGSEEKS 252
H A A F R + + LK +E S
Sbjct: 475 IYEHVPSANAKKRFRRLAVVEMLETLKEEFDELS 508
>gi|326202096|ref|ZP_08191966.1| RNA-metabolising metallo-beta-lactamase [Clostridium papyrosolvens
DSM 2782]
gi|325987891|gb|EGD48717.1| RNA-metabolising metallo-beta-lactamase [Clostridium papyrosolvens
DSM 2782]
Length = 543
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 125/274 (45%), Gaps = 22/274 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILL----DDYWERMN--LRVPIYFSAGLTIQANMY 54
+ + ++ GG V+IP+FA+GR QEL L D + +++N L VP+Y + L A
Sbjct: 235 ISETISKGGNVVIPSFAVGRTQELIYDLNKHMDVFGDKVNEILNVPVYVDSPLATSATKI 294
Query: 55 YKMLISWTSQKVKETY----NAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGF 105
++ + ++ K N DF ++ R L + ++ + GM G
Sbjct: 295 FRENLDCFDEEAKAYIANGDNPLDFPSLKFTQSPEESRKLNEKAESMIIISASGMCDAGR 354
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH + + I GY GT+G K+ G ++L G +I V +I + FS H
Sbjct: 355 VKHHLKHNLWRKESTILFVGYQAEGTLGRKIQDGAKIVKLFGEEISVNARIESIDGFSGH 414
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS-- 220
D +G++ ++ + P+ + +VHGE+ A+ + I ELG++C P+ ES I
Sbjct: 415 ADKEGLLSWIRSIGRKPKKIFVVHGEQGVAASFAQTITDELGLQCIVPSRGESYVISGGN 474
Query: 221 --THYVKAGASDAFIRSCMNPNFQYLKSGSEEKS 252
H A A F R + + LK +E S
Sbjct: 475 IYEHVPSANARKRFRRLAVVEMLETLKEEFDELS 508
>gi|146305000|ref|YP_001192316.1| beta-lactamase domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145703250|gb|ABP96392.1| beta-lactamase domain protein [Metallosphaera sedula DSM 5348]
Length = 642
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 27/246 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D +R + VP+Y + GL + +
Sbjct: 398 INKTLNRGGKVLIPVLAVGRGQEIMLVINDAMKRKLIPEVPVYVT-GLFDEVTAIHTAYP 456
Query: 60 SWTSQKVKETY-----NAFD---FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W ++V+++ N F FK + + R I P ++ AT GML GG ++E FK
Sbjct: 457 EWLGKEVRDSILFRDENPFTSEFFKRIEGY-REDIAEGEPSIILATSGMLNGGPAVEFFK 515
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-----TKIDVRCQIHQL-AFSPHT 165
AP N + Y GT+G K+ G I++ G I V + + FS H+
Sbjct: 516 QLAPDPKNSLIFVSYQAEGTLGRKVRDGAREIQIIGRDGRVDNIKVNLETTPIDGFSGHS 575
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQS-----ELGIKC---YDPANNES 215
D + ++ ++ L+ P+++IL HGE + K+ I++ LG++ Y PA +S
Sbjct: 576 DRRQLLKFLEDLTPKPRNIILNHGEASAIREFKKNIENFRERERLGLRSANIYSPAILDS 635
Query: 216 MCIPST 221
+ + T
Sbjct: 636 IRLDKT 641
>gi|345017207|ref|YP_004819560.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344032550|gb|AEM78276.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 542
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 24/249 (9%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCI-------LLDDYWERMNLRVPIYFSAGLTIQANMYY 55
K V GG V+IP+FA+GR QEL L D E +N VP+Y + L +
Sbjct: 235 KTVKRGGNVIIPSFAVGRTQELLYELHKNRELYKDEIEFLN-NVPVYVDSPLATSITDVF 293
Query: 56 ----KMLISWTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFS 106
+ L S +K DF N+H ++L + P ++ + GM G
Sbjct: 294 TKHPEYLDSEAQDYIKRGDLPLDFPNLHFTHSVEESKALNEIKTPVIIISASGMCEAGRI 353
Query: 107 LEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSP 163
KH W P + GY GT+G KL+ G +++ G I V+ +I + +FS
Sbjct: 354 KHHLKHNLWRPE--CTVLFVGYQAKGTLGRKLLEGEKNVKIFGEDISVKAEIEYIESFSG 411
Query: 164 HTDGKGIMD-LVKFLS-PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
H D KGI+D L +F P+ + +VHGE L ++I+++LGI+ P+ ++
Sbjct: 412 HADQKGILDWLSQFTDKPRKIFIVHGEDEAQEELADKIENQLGIETLIPSRYDTYNFEED 471
Query: 222 HYVKAGASD 230
A A D
Sbjct: 472 KLFTAEAED 480
>gi|417926423|ref|ZP_12569822.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
gi|341589273|gb|EGS32555.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
Length = 539
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 17/227 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-----RMNLRVPIYFSAGLTIQANMYY 55
+ K A GG V+IP+FA+GR QE+ L+ Y++ +VP+Y + + ++A +
Sbjct: 231 IEKVSAKGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAF 290
Query: 56 KMLISWTSQKVKETY----NAFDFKNVH---NFDRS--LIDAPGPCVLFATPGMLTGGFS 106
+QK K+ N F+F+N+H N D S L P V+ ++ GM T G
Sbjct: 291 MENTDLFNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNSVKFPRVIISSSGMATAGRV 350
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHT 165
KH E N + GY G++G L+ G ++L G I V +I L FS H
Sbjct: 351 RHHLKHNLWDEKNAVVFVGYQAQGSLGRILLDGVDEVKLFGETIKVNAKIFNLGGFSGHA 410
Query: 166 DGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
D +M+ V + P+ + + HGE L + + + ++ P
Sbjct: 411 DQNNLMEFVDNMKIKPKKIFITHGENDGAEALSKLLIEKYNVEAIIP 457
>gi|402696937|gb|AFQ90657.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Dibamus sp. JJF-2012]
Length = 220
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKML 58
VH V GG+ LIP FALGRAQEL ++LD+YW+ +PIY+++ L + Y+
Sbjct: 84 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHXXLHDIPIYYASSLAKKCMAVYQTY 143
Query: 59 ISWTSQKVKETY---NAFDFKNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++ + K+++ N F K++ N D GP V+ A+PGM+ G S E+F+ W
Sbjct: 144 VNAMNDKIRKXXXINNPFVJKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 203
Query: 115 PSEMNLITLPGYCLAGT 131
+ N + + GYC+ GT
Sbjct: 204 TDKRNGVIIAGYCVEGT 220
>gi|121593887|ref|YP_985783.1| beta-lactamase domain-containing protein [Acidovorax sp. JS42]
gi|120605967|gb|ABM41707.1| beta-lactamase domain protein [Acidovorax sp. JS42]
Length = 452
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 7/217 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+++ A GG V+IPAFA+GRAQ L + ER + +P+Y + + I A Y
Sbjct: 227 INRTAARGGTVVIPAFAVGRAQTLLYAIHLLKERGVIHHLPVYLDSPMAIDATRIYHTHR 286
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
T ++ + +A N ++L GP V+ + GM TGG + K +AP
Sbjct: 287 DEHRLTPEQCEAMCHAATIVNKPADSKALSARRGPMVIISASGMATGGRVVHHLKSFAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I GY GT G ++ G ++ + G ++ +R ++ L + S H D I+ ++
Sbjct: 347 HRNTILFAGYQAGGTRGATILQGAASVRIHGEEVPIRAEVASLGSLSAHADAGEILQWMR 406
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
+P+ + HGE ++ RI+ ELG C P
Sbjct: 407 GFDAAPKMTFVTHGEPSAADAMRSRIEHELGWPCRVP 443
>gi|302380226|ref|ZP_07268698.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|303235047|ref|ZP_07321671.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
gi|302312009|gb|EFK94018.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|302493902|gb|EFL53684.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
Length = 539
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 17/227 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-----RMNLRVPIYFSAGLTIQANMYY 55
+ K A GG V+IP+FA+GR QE+ L+ Y++ +VP+Y + + ++A +
Sbjct: 231 IEKVSAKGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAF 290
Query: 56 KMLISWTSQKVKETY----NAFDFKNVH---NFDRS--LIDAPGPCVLFATPGMLTGGFS 106
+QK K+ N F+F+N+H N D S L P V+ ++ GM T G
Sbjct: 291 MENTDLFNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNSVKFPRVIISSSGMATAGRV 350
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHT 165
KH E N + GY G++G L+ G ++L G I V +I L FS H
Sbjct: 351 RHHLKHNLWDEKNAVVFVGYQAQGSLGRILLDGVDEVKLFGETIKVNAKIFNLGGFSGHA 410
Query: 166 DGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
D +M+ V + P+ + + HGE L + + + ++ P
Sbjct: 411 DQNNLMEFVDNMKIKPKKIFITHGENDGAEALSKLLIEKYNVEAIIP 457
>gi|268323698|emb|CBH37286.1| conserved hypothetical protein, RNA-metabolising
metallo-beta-lactamase family [uncultured archaeon]
Length = 628
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + + GGKV+IPAFA+GR+QE+ I L E M L VP+Y G+ +A +
Sbjct: 399 IERTLKQGGKVIIPAFAVGRSQEVMIAL----EGMQLEVPVYLD-GMIWEATAIHSAYPE 453
Query: 61 WTSQKVKETY----NAF---DFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ ++ +K + N F F V + + R +I+ ++ +T GML GG LE K
Sbjct: 454 YLNKNLKNSIYQGANPFLSDIFVQVDDAEKRREIIEGDESSIILSTSGMLNGGPVLEYLK 513
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQL---AFSPHTD 166
A E N + GY GT+G ++ G I+L +G ++++ +I FS H+D
Sbjct: 514 GLAGDERNTLIFVGYQAEGTLGRRIQKGWEEIQLSADGKMVNIKMKIGTATIDGFSGHSD 573
Query: 167 GKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+++ VK + P V+ +HGE K L I +L I P N E++
Sbjct: 574 RNQLLEYVKRIRPLPSKVMCMHGESNKCIALASGIHKKLNIDTSAPMNLETL 625
>gi|124485834|ref|YP_001030450.1| ADP-ribosylation/crystallin J1 [Methanocorpusculum labreanum Z]
gi|124363375|gb|ABN07183.1| beta-lactamase domain protein [Methanocorpusculum labreanum Z]
Length = 636
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 22/233 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVP---IYFSAGLTIQANMYYKM 57
+++ + GGKVLIPAFA+GR+QEL + +++ N R+P +Y G+ +A +
Sbjct: 404 INETLGRGGKVLIPAFAVGRSQELMLAIEEGMR--NNRIPKCKVYLD-GMIKEATAMHTA 460
Query: 58 LISWTSQKVK-----ETYNAFD---FKNVHNFDR--SLIDAPGPCVLFATPGMLTGGFSL 107
+ + ++ + YN F F+ V ++D+ +I + PCV+ +T GM+ GG +
Sbjct: 461 YPEYLNTDLRNLIFRDNYNPFLADCFEQVDSYDKRQQVIFSEDPCVIISTSGMMNGGPVI 520
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQL-AFSPH 164
E + A S N+I GY GT G ++ G + + GT I + +I + FS H
Sbjct: 521 EYLSNLAESPKNMIVFVGYQAEGTYGRRIQKGWREVPIGKRGT-IVINMEIQTVEGFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
D K +M+ V+++ P+ V +HGE+ K I + I+ P N E+
Sbjct: 580 ADRKQLMNYVQYVQPKPERVFTIHGEESKTIDFASSIYKKFHIQTVAPQNLET 632
>gi|159041038|ref|YP_001540290.1| beta-lactamase domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919873|gb|ABW01300.1| beta-lactamase domain protein [Caldivirga maquilingensis IC-167]
Length = 636
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 26/224 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V K + GGKVLIP F+ GRAQE+ LL+D + L + PIY G+ +Q + M
Sbjct: 396 VGKTLENGGKVLIPVFSTGRAQEILFLLNDSMQAGKLTKAPIYVD-GMVLQTLNVHLMFP 454
Query: 60 SWTSQKVKET----YNAFDFKNVHNFDRS------------LIDAPGPCVLFATPGMLTG 103
+ + VKE N F + V +R+ ++ P P ++ A GML+G
Sbjct: 455 DYLNNNVKELIYDGVNPFISEYVKPVERARNPDKRQEQVMDILQGP-PSIILAPHGMLSG 513
Query: 104 GFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQI-----HQ 158
G +++ F H A N + Y GT+G +L+ G + L+ D+ + H+
Sbjct: 514 GPAMDYFVHMADDAKNSLIFVSYQGEGTLGRRLIQGERKVNLKYYDQDITVNVNMNVFHE 573
Query: 159 LAFSPHTDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQ 200
FS H+D K +M+ V + P+ V+LVHGE K+ L I+
Sbjct: 574 PGFSGHSDRKQLMNYVGRIEPKPHKVMLVHGEPSKLMNLALSIE 617
>gi|289579410|ref|YP_003478037.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
gi|289529123|gb|ADD03475.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
Length = 829
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 22/231 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKV+IPAFALGRAQE+ ++L + L+ +Y G+ + YK+ +
Sbjct: 217 VSSIINEGGKVIIPAFALGRAQEIILILKKAINKGLLKTKVYVD-GMVREVCRVYKLNPN 275
Query: 61 WTSQKV-KETYNAFDFKNVHNFDRSLIDAPGP----------CVLFATPGMLTGGFSLEV 109
+ Q + K+ + D FD ++I+ P CV+ ++ GM+TGG S
Sbjct: 276 YLRQNLAKKIFKGNDI----FFDDNVIEVEKPEMREEIIKESCVILSSSGMITGGPSQWY 331
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ A E NLI + GY + G +L+ N I+++ +I + I + S
Sbjct: 332 VEKLAQDEKNLIAITGYQDEESPGRRLLDIMEESPENRKIKIDDKEILINASIDKFGLSA 391
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
H D I+ L L P+ + LVHG+ + L + +Q +L + Y P+N +
Sbjct: 392 HADMGEILALANSLYPKKIFLVHGDPEIINFLGKEVQKDLKSEVYIPSNGD 442
>gi|297545551|ref|YP_003677853.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843326|gb|ADH61842.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 829
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 22/231 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKV+IPAFALGRAQE+ ++L + L+ +Y G+ + YK+ +
Sbjct: 217 VSSIINEGGKVIIPAFALGRAQEIILILKKAINKGLLKTKVYVD-GMVREVCRVYKLNPN 275
Query: 61 WTSQKV-KETYNAFDFKNVHNFDRSLIDAPGP----------CVLFATPGMLTGGFSLEV 109
+ Q + K+ + D FD ++I+ P CV+ ++ GM+TGG S
Sbjct: 276 YLRQNLAKKIFKGNDI----FFDDNVIEVEKPEMREEIIKESCVILSSSGMITGGPSQWY 331
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ A E NLI + GY + G +L+ N I+++ +I + I + S
Sbjct: 332 VEKLAQDEKNLIAITGYQDEESPGRRLLDIMEESPENRKIKIDDKEILINASIDKFGLSA 391
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
H D I+ L L P+ + LVHG+ + L + +Q +L + Y P+N +
Sbjct: 392 HADMGEILALANSLYPKKIFLVHGDPEIINFLGKEVQKDLKSEVYIPSNGD 442
>gi|15920543|ref|NP_376212.1| cleavage and polyadenylation specificity factor large subunit
[Sulfolobus tokodaii str. 7]
gi|342306155|dbj|BAK54244.1| putative ribonuclease J [Sulfolobus tokodaii str. 7]
Length = 637
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 29/243 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSA---GLTIQANMYYK 56
+++ ++ GG+VLIP A+GR QE+ ++L+D ++ + VPIY + +T N Y +
Sbjct: 398 INRTISRGGRVLIPVLAVGRGQEIMLVLNDAMKKKLIPEVPIYVTGLVEEITAIHNAYPE 457
Query: 57 MLISWTSQKVKETY-----NAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEV 109
ML S++V+E N F + H + R I P ++ AT GML GG ++E
Sbjct: 458 ML----SREVREAILYKDENPFMSEFFHRIEGYREDIAQGEPSIILATSGMLNGGPAVEF 513
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EG--TKIDVRCQIHQL-AFSP 163
FK AP N I Y GT+G K+ G I++ +G I ++ ++ ++ FS
Sbjct: 514 FKTMAPDSRNSIIFVSYQAEGTLGRKVSDGAQEIQIIDRDGRIENIQIKMEVTRVEGFSG 573
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE------LGIKCYDPANNES 215
H+D + +++ +K L+ P++++L HGE + + + ++ E G K Y P +S
Sbjct: 574 HSDRRQLLNFLKNLNVKPKNLLLNHGEPGSIESFRRLVEREKEKIGMKGTKVYAPQILDS 633
Query: 216 MCI 218
+ +
Sbjct: 634 IRV 636
>gi|220929181|ref|YP_002506090.1| RNA-metabolising metallo-beta-lactamase [Clostridium cellulolyticum
H10]
gi|219999509|gb|ACL76110.1| RNA-metabolising metallo-beta-lactamase [Clostridium cellulolyticum
H10]
Length = 543
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 18/248 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN------LRVPIYFSAGLTIQANMY 54
+ + ++ GG V+IP+FA+GR QEL L+ Y + + L VP+Y + L A
Sbjct: 235 ISETISKGGNVVIPSFAVGRTQELIYDLNKYMDVFDDKVNQILNVPVYVDSPLATSATQI 294
Query: 55 YKMLISWTSQKVKETY----NAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGF 105
++ + ++ KE N DF ++ R L + ++ + GM G
Sbjct: 295 FRENLDCFDEEAKEYIANGDNPLDFPSLKFTQSPEESRKLNEKSESMIIISASGMCEAGR 354
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH E + I GY GT+G K+ G + L G +I V +I + FS H
Sbjct: 355 IKHHLKHNLWREESTILFVGYQAEGTLGRKIQDGAKKVRLFGEEIFVNARIETIDGFSGH 414
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 222
D G++ + + P+ + +VHGE+ A+ + I ELG++C P+ ES I +
Sbjct: 415 ADKDGLISWIGSIGRKPKKIFVVHGEQGVGASFAQTITDELGLQCIVPSRGESFVISGGN 474
Query: 223 YVKAGASD 230
+ SD
Sbjct: 475 IYEHVPSD 482
>gi|290559801|gb|EFD93125.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 629
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 24/230 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGL---TIQANMYY 55
+ K VA GKVL+P +GRAQE+ +L+++ W+R L VP+ L T +Y
Sbjct: 395 ISKTVANNGKVLVPVLGVGRAQEIMLLIEE-WQRYGLLPEVPVIVDGMLWDVTAIYTVYP 453
Query: 56 KMLISWTSQKVKETYN----AFDFKN-VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + S T ++ +N + FK+ V +R + + GP +L AT GML GG S+ F
Sbjct: 454 EFMNSETRNRIITHHNNPFLSPIFKHTVSEEERQQVLSGGPAILLATSGMLNGGPSVSYF 513
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNP--TIELEG--TKIDVRCQIHQL-AFSPHT 165
+ E N I L Y GT+G + +G IEL G V ++ + FS H+
Sbjct: 514 ANLCEDEKNAIVLVSYQGVGTLGRTIQNGGREVDIELNGKLKHFTVNALVYSIEGFSGHS 573
Query: 166 DGKGIMDLVKFLS-----PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
D K L +F+S P+ VI+ HGE+ K+ L ++ GI+ Y P
Sbjct: 574 DRK---QLERFVSDIRPKPRKVIIGHGEEGKILELSHYVRRRFGIETYAP 620
>gi|427412019|ref|ZP_18902221.1| hypothetical protein HMPREF9718_04695 [Sphingobium yanoikuyae ATCC
51230]
gi|425709502|gb|EKU72528.1| hypothetical protein HMPREF9718_04695 [Sphingobium yanoikuyae ATCC
51230]
Length = 482
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 98/218 (44%), Gaps = 7/218 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V +CV GG V+IPAFA+GR Q L + LR +PI+ + + I A+ +
Sbjct: 257 VERCVERGGTVVIPAFAVGRVQSLLYHFSRLRAQGRLRDIPIFLDSPMAINASGLMCDFM 316
Query: 60 SWTSQKVKETYNAFDFKN-VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
E A + V + S L P P V+ + GM TGG L K +AP
Sbjct: 317 DEHRLARAECEAACSVAHYVREVEESKELTANPAPKVIISASGMATGGRVLHHLKRFAPD 376
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
NLI G+ AGT G ++ G TI++ G I V + L S H D +M +
Sbjct: 377 GKNLILFSGFQAAGTRGAAMIGGARTIKIHGEYIPVEADVANLTMLSAHADSDELMRWLG 436
Query: 176 FLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
L P+HV + HGE L +R+ LG C PA
Sbjct: 437 SLQEPPRHVYVTHGEPTGAQVLAKRVSENLGWACSVPA 474
>gi|411006727|ref|ZP_11383056.1| beta-lactamase domain-containing protein [Streptomyces globisporus
C-1027]
Length = 475
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-----MNLRVPIYFSAGLTIQANMYY 55
+ + +A GG VLIPAFA+ R + ++L + E + VP+Y + + + A Y
Sbjct: 243 IGRTLARGGTVLIPAFAIDRTE---VVLHELVELRAAGVLPAAVPVYVDSPMALAALDVY 299
Query: 56 KMLISWTSQKVKE--------TYNAFDFKNVHNFDRSLI--DAPGPCVLFATPGMLTGGF 105
+ + S +++ + F S+ GPCV+ ++ GM TGG
Sbjct: 300 RQAVRDRSPELRPDVMDQGAGALSPDPFLAARTVQESIAINSTHGPCVIVSSAGMATGGR 359
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPH 164
L + P N + + G+ AGT L++G P +++ G I VR ++ + FS H
Sbjct: 360 VLHHLRRLLPDPRNTVVVVGFAAAGTRARDLVNGVPALKMFGEYIPVRAEVADVPHFSAH 419
Query: 165 TDGKGIMDLVKFLSPQHVI-LVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
DG I+D ++ P H +VHGE TL+ RI ELG P + E++ +
Sbjct: 420 ADGSQILDWLRGAPPPHTTYVVHGEPSAAETLRARISDELGWTAVVPRSGEAVLV 474
>gi|312621851|ref|YP_004023464.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202318|gb|ADQ45645.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 821
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 135/314 (42%), Gaps = 41/314 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGL-----------TI 49
V + ++ GGKVLIPAFA+GRAQE+ ++L ++ ++ + ++ + T
Sbjct: 214 VAEVISQGGKVLIPAFAIGRAQEIILILRNFMKKRKVSFNVFIDGMVREVIRVYRNNPTY 273
Query: 50 QANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ YYK ++ + + N K +I + PCV+ ++ GMLTGG S+
Sbjct: 274 LSSRYYKRVLKGEEIFLADNINVISDKKQR---EEIISSSDPCVIISSSGMLTGGPSVFY 330
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSP 163
+ ++ LI + GY G KL+ I+L G + +V+C++ + S
Sbjct: 331 AEKIVQNQNALIAITGYQDEEAPGRKLLELAELPENERKIDLNGKEYEVKCRVEKYGLSA 390
Query: 164 HTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHY 223
H+D I+ + L P+ VI HG + ++ + + EL P N E I S
Sbjct: 391 HSDRDRILGFLVTLRPRTVIFAHGSEDAISQISDMAVKELEANIIVPQNGEINSI-SIEK 449
Query: 224 VKAGASDAFIRSCMNPN----------FQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVA 273
+ S ++ NP +QYL E K S E + +W
Sbjct: 450 PRKQLSFFNVKKLNNPELLNEEDLKLLWQYL---VENKQESNHITAEHAILIW------- 499
Query: 274 EGILVLEKSEKAKV 287
G LEK E +V
Sbjct: 500 NGKEFLEKEEVNRV 513
>gi|404330601|ref|ZP_10971049.1| beta-lactamase [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 902
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 12/211 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYK--- 56
V + +AGGG LIPAFALGRAQE+ ++L DY +R + PIY +T +Y +
Sbjct: 218 VAEVIAGGGFALIPAFALGRAQEVLLILQDYMDRGLIPEFPIYVDGLVTPICKIYRRYPQ 277
Query: 57 MLISWTSQKVKETYNAFDFKN----VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L +++++ + F + V DR + P + A+ GML GG S+ +
Sbjct: 278 YLKGPVARRIRMHGDVFLTEGRCTAVEPKDRENVLRGKPACIVASSGMLIGGASVWYAER 337
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMS----GNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
+ N I + GY + G KL+S + +EL GT VRC++ + S H D
Sbjct: 338 LVSGDKNAIFITGYQDEESPGRKLLSLAEGQSRELELNGTLHPVRCRVGKYGLSAHADAG 397
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERI 199
+ V + P ++VHG+ L+ERI
Sbjct: 398 ELTRFVAMVRPSRTLIVHGDDDARVALQERI 428
>gi|290991717|ref|XP_002678481.1| beta-lactamase family exonuclease [Naegleria gruberi]
gi|284092094|gb|EFC45737.1| beta-lactamase family exonuclease [Naegleria gruberi]
Length = 658
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 10/220 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCI-LLDDYWERMNLRVPIYFSAGLTIQANMYYKMLI 59
V V G +LIPAFA+GR+Q + LL E+ +P++ ++ ++++A +Y+ +
Sbjct: 370 VEHIVENDGVILIPAFAIGRSQTIAYHLLKMMREKEIPTLPVHMNSPMSVEALDFYQQYL 429
Query: 60 SWTSQK-----VKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
QK +++ K + L D CV+ ++ GM+TGG L F+ A
Sbjct: 430 LDEHQKDAHEILRDVICHNSAKESKELHKKLKDGYSKCVIISSSGMMTGGRCLFHFEELA 489
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI--- 170
P E N++ L G+ GT G L++G I+L G ++V+CQ+ Q+ S H D +
Sbjct: 490 PHEKNVLLLSGFQAEGTRGRDLLNGVRDIKLLGKTVNVKCQVMQVQGLSAHGDTDDVIKW 549
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++ K P+ V +VHGE + ++ I EL + P
Sbjct: 550 IEAAKNPKPKMVFVVHGEPTSLRSMAREICVELDVNALVP 589
>gi|410721908|ref|ZP_11361230.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
gi|410598026|gb|EKQ52618.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
Length = 634
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++ + GK+LIP FA+GRAQEL I+LD+Y + VPIY G+ +A +
Sbjct: 400 IYHTLERKGKILIPVFAVGRAQELMIVLDEYIRHGIIDEVPIYID-GMIWEATAIHTARP 458
Query: 60 SWTSQKVKETY-----NAFDFKNVHNF----DRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ +++ N F + H +R I P ++ +T GMLTGG S+E F
Sbjct: 459 EYLSKDLRDQIFHMGRNPFISEVFHKVNGVEERKDIVEGEPAIILSTSGMLTGGNSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK--IDVRCQIHQL-AFSPHT 165
K E + + GY G++G +L G I L EG +V+ I + FS H+
Sbjct: 519 KWLCEDERSSLVFVGYQAEGSLGRRLQKGWKEIPLKEEGKTNVYNVKMNIKTIEGFSGHS 578
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D + +MD V+ +S P+ +++ HG+ K L I I+ P N E++ I
Sbjct: 579 DRRQLMDYVRRISPKPEKILICHGDNYKTLDLASSIYRSYKIETKTPMNLETVRI 633
>gi|431802334|ref|YP_007229237.1| metallo-beta-lactamase [Pseudomonas putida HB3267]
gi|430793099|gb|AGA73294.1| metallo-beta-lactamase [Pseudomonas putida HB3267]
Length = 455
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 9/218 (4%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
G L+P+FA+GRAQ L L +R L +P+Y ++ + A Y+ S +
Sbjct: 235 GITLVPSFAVGRAQLLMYYLYK-LKRDGLIPDIPVYLNSPMATDATTLYQQFRSEHRLTL 293
Query: 67 KETYNA-FDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
E + D + D R L P V+ A GM TGG L K AP+ N I
Sbjct: 294 AECADMCRDTHIIRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSILF 353
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFLS--PQ 180
G+ GT G +++G ++ L G + +R Q+H + S H D IM+ ++ + P+
Sbjct: 354 SGFQAGGTRGADIVAGARSVRLHGEDVPIRAQVHAMDNLSAHVDADEIMEWLRGFARPPR 413
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++HGE TL+ RI ELG + Y P +E++ I
Sbjct: 414 QTYVIHGEPHAADTLRRRISIELGWQVYVPEYHETVAI 451
>gi|392956492|ref|ZP_10322019.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
gi|391877474|gb|EIT86067.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
Length = 896
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 104/211 (49%), Gaps = 11/211 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYY---K 56
V +AGGG LIPAFALGRAQE+ ++L DY ER + + PIY +T + +Y
Sbjct: 218 VAATIAGGGFALIPAFALGRAQEVLLILQDYMERGLIPQFPIYVDGLVTPISRIYRDYPH 277
Query: 57 MLISWTSQKVKETYNAF---DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
L + ++ + +AF + V +R + P + A+ GMLTGG S +
Sbjct: 278 YLKGPVAHRIMKNGDAFLTERCRAVSRDEREDVLNGKPACIVASSGMLTGGASAWYAERL 337
Query: 114 APSEMNLITLPGYCLAGTIGNKLMS----GNPTIELEGTKIDVRCQIHQLAFSPHTDGKG 169
+E N I + GY + G KL++ IEL G + V+C + + S H D
Sbjct: 338 LSNEKNAIFITGYQDEESPGRKLLNLADGIEQHIELNGREYPVQCSVTKYGLSGHADAHE 397
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATLKERIQ 200
+ ++ L+P H +LVHG+ L ER+
Sbjct: 398 MNVFIEALAPTHTLLVHGDDTARMQLAERLH 428
>gi|374633103|ref|ZP_09705470.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
gi|373524587|gb|EHP69464.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
Length = 639
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 37/248 (14%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K + GGKVLIP A+GR QE+ ++++D +R + +P+Y + GL + +
Sbjct: 398 INKTINRGGKVLIPVLAVGRGQEIMLVINDAMKRKLIPEIPVYVT-GLFDEVTAIHTAYP 456
Query: 60 SWTSQKVKETY-----NAFD---FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W ++V+++ N F FK + F R I P ++ AT GML GG ++E FK
Sbjct: 457 EWLGKEVRDSILFRDENPFTSDYFKRIEGF-REDIAQGEPSIILATSGMLNGGPAVEFFK 515
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL--------AFSP 163
+ AP N + Y GT+G K+ G I++ G D R + ++ FS
Sbjct: 516 YLAPDPKNSLVFVSYQAEGTLGRKVRDGAKEIQVVGR--DGRVESIKVNLEHTPIDGFSG 573
Query: 164 HTDGKGIMDLVKFLS-----PQHVILVHGEKPKMATLKE-----RIQSELGIKC---YDP 210
H+D + L+KFL P+++IL HGE + + R + LGI+ Y P
Sbjct: 574 HSDRR---QLLKFLEDMVPKPRNIILNHGESSAIRAFSKVLENPRERDRLGIRSSNIYAP 630
Query: 211 ANNESMCI 218
+ +S+ +
Sbjct: 631 SILDSLRV 638
>gi|333897952|ref|YP_004471826.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113217|gb|AEF18154.1| beta-lactamase domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 537
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELC--ILLDDYWERMNL----RVPIYFSAGL-TIQANM 53
+ K ++ GG V+IP+FA+GR QEL I D+ + + +VP+Y + L T ++
Sbjct: 233 IKKTISRGGNVIIPSFAVGRTQELLYEIHKDEELYKNEIEYISKVPVYVDSPLATSVTDV 292
Query: 54 YYKMLISWTSQKVKETYNA---FDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGF 105
+ K L + + N DF N+H ++L D P ++ + GM G
Sbjct: 293 FRKHLDYFDDEARSYVENGDYPLDFPNLHFTHSTEESKALNDLKEPVIIISASGMCEAGR 352
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH + I GY GT+G +++ G T+ + G +I V +I + +FS H
Sbjct: 353 IKHHLKHNLWRSDSTIVFVGYQAKGTLGRRILEGEKTVNIFGEEITVNAEIQNIESFSGH 412
Query: 165 TDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
D KGIMD + P+ V +VHGE L E+I+ I+ P+ ++ S
Sbjct: 413 ADQKGIMDWISSFKKKPKKVFIVHGEDSAQKVLSEKIKDVFNIETVIPSKYDTYDFES 470
>gi|374724464|gb|EHR76544.1| putative metal-dependent RNase [uncultured marine group II
euryarchaeote]
Length = 634
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V + ++ GGK++ P FA+GR+QE+ I +D+ + ++ VP++ G+ +A +
Sbjct: 398 VSRTISRGGKLICPVFAVGRSQEVMIAIDELFRSGQVKPVPVWLD-GMIQEATAIHASHP 456
Query: 60 SWTSQKVKETYNAFDFKNV-----------HNFDRSLIDAPGPCVLFATPGMLTGGFSLE 108
+ + ++++ D +N S+I PC++ AT GML GG +E
Sbjct: 457 DYLTSSLRKSLLKDDGENPFTSEWFRPVKGRELRESIIMDNSPCIVLATSGMLNGGPVME 516
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL----EGTKIDVRCQIHQL-AFSP 163
F+HWA + N + GY GT+G +L G + + + + + C++ + FS
Sbjct: 517 YFRHWAHEDRNSLCFVGYQAEGTLGRRLQKGFGEVPMVINGKTEIVKIGCEMVTIDGFSG 576
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + ++D V LS P+++I HG+ K L ++ + Y P N E++
Sbjct: 577 HSDRRQLLDFVDQLSPKPKNIICHHGDYHKCNELGHTLRERYKCRTYAPKNLETI 631
>gi|150388612|ref|YP_001318661.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus
metalliredigens QYMF]
gi|149948474|gb|ABR47002.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus
metalliredigens QYMF]
Length = 543
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN-----LRVPIYFSAGLTIQANMYY 55
++K V GG V+IP+FA+GR QEL L Y++ N +R+PIY + + I A +
Sbjct: 233 INKTVLRGGTVIIPSFAVGRTQELIYELSQYYKANNELDAFMRIPIYIDSPMAISATEVF 292
Query: 56 KM----LISWTSQKVKETYNAFDFKNVHNFDRS------LIDAPGPCVLFATPGMLTGGF 105
K T + + N DF+N+H F R L ++ P V+ + GM TGG
Sbjct: 293 KKNSYCFDDETKKLILGGSNPLDFENLH-FVRDHKESMRLNESNYPKVIISASGMCTGGR 351
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH N + GY GT+G L G ++L G +I V +I+ + FS H
Sbjct: 352 IRHHLKHNLWKANNSLIFVGYQAQGTLGRILKDGAKKVKLLGEEIAVLSEIYSIEGFSGH 411
Query: 165 TDGKGIMDLVKFLS-----PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D DL+++L P+ V LVHGE + L I+ + I P S I
Sbjct: 412 ADQ---TDLIEWLGHFKKKPKRVFLVHGEDTSLDNLSSLIKEKFDIPTIIPNMGYSFQI 467
>gi|224140917|ref|XP_002323823.1| predicted protein [Populus trichocarpa]
gi|222866825|gb|EEF03956.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 12/147 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW----ERMNLRVPIYFSAGLTIQANMYYK 56
+H ++ GG+VLIPAFALGRAQEL ++LD+YW E N +PIY+++ L + Y+
Sbjct: 107 IHSTISLGGRVLIPAFALGRAQELLLILDEYWANHPELHN--IPIYYASPLAKKCMTVYQ 164
Query: 57 MLISWTSQKVKETY---NAFDFKNVHNFDRSLIDAP--GPCVLFATPGMLTGGFSLEVFK 111
I +++++ + N F FK++ + S+ D GP V+ A+PG L G S ++F
Sbjct: 165 TYILSMNERIRNQFANSNPFKFKHISPLN-SIEDFSDVGPSVVMASPGGLQSGLSRQLFD 223
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMS 138
W + N LPGY + GT+ +++
Sbjct: 224 MWCSDKKNACVLPGYVVEGTLAKTIIN 250
>gi|408382616|ref|ZP_11180159.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
gi|407814692|gb|EKF85316.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
Length = 634
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 18/235 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++ + GK+LIP FA+GRAQEL I+LD+Y + VPIY G+ +A +
Sbjct: 400 IYHTLERKGKILIPVFAVGRAQELMIVLDEYIRHGIIDEVPIYID-GMIWEATAIHTARP 458
Query: 60 SWTSQKVKETY-----NAFD---FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+ +++ N F F V+N + R I P ++ +T GMLTGG S+E F
Sbjct: 459 EYLSKDLRDQIFHMGRNPFISEVFHKVNNVEERKDIVEGEPSIILSTSGMLTGGNSVEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTK--IDVRCQIHQL-AFSPHT 165
K E + + GY G++G +L G I L EG V+ I + FS H+
Sbjct: 519 KWLCEDERSSLVFVGYQAEGSLGRRLQKGWKEIPLKEEGKTNVYHVKMGIKTIEGFSGHS 578
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D + +MD V+ +S P+ +++ HG+ K L I I+ P N E++ I
Sbjct: 579 DRRQLMDYVRRISPKPEKILICHGDNYKTLDLASSIYRSYKIETKTPMNLETVRI 633
>gi|410460059|ref|ZP_11313745.1| RNA-metabolising metallo-beta-lactamase [Bacillus azotoformans LMG
9581]
gi|409927679|gb|EKN64809.1| RNA-metabolising metallo-beta-lactamase [Bacillus azotoformans LMG
9581]
Length = 907
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQA---NMYYK 56
V + ++ GG VLIPAFALGRAQE+ ++L DY ER + PIY +T + N Y +
Sbjct: 218 VSEVISSGGFVLIPAFALGRAQEVLLVLQDYMERGLIPEFPIYVDGLVTPISKIYNSYPQ 277
Query: 57 MLISWTSQKVKETYNAF----DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L + ++++ + F + V +R+ + P + A+ GMLTGG S +
Sbjct: 278 YLKGPVAHRIRKNGDVFITEGRVRAVSPKERNEVLQGKPGCIVASSGMLTGGASSWYAER 337
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTI----ELEGTKIDVRCQIHQLAFSPHTDGK 168
+E N I + GY + G KL++ I EL GT +V+C + + S H D
Sbjct: 338 LISNEKNAIFITGYQDEESPGRKLLNLAENIENQLELNGTTYEVKCLVRKYGLSGHADAN 397
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERI 199
I ++ L P + +LVHG+ + + +I
Sbjct: 398 EINRFIQSLKPTYTLLVHGDDDARSQIASQI 428
>gi|422344059|ref|ZP_16424986.1| hypothetical protein HMPREF9432_01046 [Selenomonas noxia F0398]
gi|355377807|gb|EHG25016.1| hypothetical protein HMPREF9432_01046 [Selenomonas noxia F0398]
Length = 536
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQAN-MYYKMLISWTSQ 64
GG V+IP+FA+GR Q L + W+ R+ +PI + L IQA ++ K + +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYNLWKEGRLEGDIPIIIDSPLAIQATRIFLKNYEDFDEE 297
Query: 65 KV-----KETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ K T +F + R+L A G ++ + GM G L KH W
Sbjct: 298 TIAFFGEKGTIPSFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI--- 170
P L GY G++G +L+ G + + G +I V+ +I L FS H D I
Sbjct: 358 PESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEISVKARIQMLEGFSAHADAAQIVAW 415
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
M + P V LVHGE LKERIQ ELG + Y P
Sbjct: 416 MGEITAPRPAKVFLVHGEGQAQEALKERIQEELGWEVYAP 455
>gi|375106423|ref|ZP_09752684.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Burkholderiales bacterium JOSHI_001]
gi|374667154|gb|EHR71939.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Burkholderiales bacterium JOSHI_001]
Length = 451
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKM- 57
+ V GG VL+PAFA+GRAQ L ++L + +P++ + + IQA Y+
Sbjct: 226 IRDTVHRGGSVLLPAFAVGRAQALLVVLQRLKRSGAIPADLPVFLDSPMAIQATELYRHH 285
Query: 58 --LISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
L+ + + + + + L + P V+ + GM TGG L K P
Sbjct: 286 QKLLRIPAAEARGMADGVRLVSTAQQSARLARSRYPAVIISASGMATGGRVLHHLKALLP 345
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
E + I G+ + G+ G L++G +++ G + VR ++ L S H D +M +
Sbjct: 346 DERHHIVFAGFQVGGSRGANLVAGAREVKIHGEFVPVRAEVSHLEGLSGHADADELMAWL 405
Query: 175 KFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ L P+ +VHGE L+ RIQ ELG P + +++ +
Sbjct: 406 RALRQPPRQTFVVHGEPEASDALRRRIQDELGWAVRVPQHGQTVQV 451
>gi|167573768|ref|ZP_02366642.1| metallo-beta-lactamase family protein [Burkholderia oklahomensis
C6786]
Length = 459
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP+Y + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILHYIAQLKKTGRMPHVPVYLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L + +AP
Sbjct: 289 HRLTMSDADAIGHAATMVRTVEQSKAIADHNGPMVIIAGSGMATGGRVLHHIERYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N I L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ ++
Sbjct: 349 NTILLVGYQAAGTRGAALAAHEPTVKIHGEYVRVRAQVEMISSLSAHADYNEILAWLRAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L C P+ ES+
Sbjct: 409 SSAPARTFVTHGEPAAADALRRRIEESLHWHCEVPSYLESV 449
>gi|169598186|ref|XP_001792516.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
gi|111068983|gb|EAT90103.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
Length = 833
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 47/225 (20%)
Query: 38 RVPIYFSAGLTIQANMYYKMLISWTSQKVKETY----------------NAFDFKNVHNF 81
++PIY+++ L + Y+ + + +K + A+DF+ F
Sbjct: 283 KIPIYYNSSLARRCMQVYQTYLGAMNDNIKRLFAERMNEAQAEGDTGRRGAWDFR----F 338
Query: 82 DRSL-----IDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKL 136
RSL G CV+ A+PGM+ G S E+ + WAP N + + GY + GT+ ++
Sbjct: 339 VRSLKSMDKFQDLGACVMLASPGMMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQI 398
Query: 137 MSGNPTI-----------------ELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSP 179
+ I E E + I RC + + +F+ H DGK M+ V+ ++
Sbjct: 399 VHEPDQIPAIMTRSANAARRPGQKENEQSMIPRRCTVQEYSFAAHVDGKENMEFVQEVAA 458
Query: 180 QHVILVHGEKPKMATLKERI-----QSELGIKCYDPANNESMCIP 219
VILVHGEK M LK ++ Q + K Y PAN E + IP
Sbjct: 459 PVVILVHGEKGNMTRLKSKLLSFNAQKTIPTKIYSPANCEELRIP 503
>gi|325103497|ref|YP_004273151.1| RNA-metabolising metallo-beta-lactamase [Pedobacter saltans DSM
12145]
gi|324972345|gb|ADY51329.1| RNA-metabolising metallo-beta-lactamase [Pedobacter saltans DSM
12145]
Length = 467
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 113/212 (53%), Gaps = 13/212 (6%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLISWT 62
C+ G+++IPAF++GR Q L L+ + + L +P++ + L +A Y+ ++
Sbjct: 241 CLEQPGRLIIPAFSVGRTQALVYSLNKIFSKKLLPPIPVFVDSPLANRATEVYRKYKNYV 300
Query: 63 SQKVK---ETY-NAFDFKNVHNF-----DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+++ + ETY + F+F+N+ + + D PC++ ++ GML GG + H
Sbjct: 301 NEEAEAFYETYGDKFEFENLSYVKELKESKEIADHFEPCIIISSAGMLEGGRIQDHLFHN 360
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
+ I GYC GT+G++L+ G+ I L+G + V +I + FS H D + I+D
Sbjct: 361 IQNIYAKILFIGYCSEGTLGHRLLRGDAFIRLKGKDLAVFAKIDKTDLFSGHADHQDILD 420
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSE 202
+ + P+ + LVHGE+ M LK ++++
Sbjct: 421 YIAAIPKKPKRIFLVHGEQSSMLALKNDLENK 452
>gi|148240987|ref|YP_001220488.1| putative metallo-beta-lactamase family protein [Bradyrhizobium sp.
BTAi1]
gi|146411363|gb|ABQ39816.1| putative Metallo-beta-lactamase family protein [Bradyrhizobium sp.
BTAi1]
Length = 454
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 21/217 (9%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKMLISWT 62
GG V+IPAFA+GRAQ L Y+ER+ L VPI+ + + + A+ + T
Sbjct: 236 GGTVVIPAFAVGRAQALLY----YFERIKLAGGLSNVPIFLDSPMAVDASEIFCKF--KT 289
Query: 63 SQKV------KETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
QK+ + A ++V + R L D+P P V+ + GM TGG L + +AP
Sbjct: 290 DQKLSYDECKRACAVATYIRSVEDSKR-LSDSPVPKVIISASGMATGGRVLHHLRRFAPD 348
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N + GY GT G ++SG TI + G + + + + A S H D ++ +K
Sbjct: 349 PKNTVLFAGYQAEGTRGAAMISGARTIRIHGQDVPIVADVRNIDALSAHADADEMLGWLK 408
Query: 176 F--LSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++P + HGE L+ RI ELG C P
Sbjct: 409 SGRIAPSRTFITHGELRAAHALQSRITKELGWTCVVP 445
>gi|387927741|ref|ZP_10130420.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
gi|387589885|gb|EIJ82205.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
Length = 907
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQA---NMYYK 56
V + +AGGG LIPAFALGRAQE+ ++L DY E+ + PIY +T + N Y
Sbjct: 218 VSEVIAGGGFALIPAFALGRAQEVLLILQDYMEKGLITEFPIYVDGLVTPISRIYNQYPH 277
Query: 57 MLISWTSQKVKETYNAF----DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L + ++++ + F K V +R+ + P + A+ GMLTGG S +
Sbjct: 278 FLKGPVAHRIRKNGDVFLTEGRCKAVEPKERNEVLNGKPGCIVASSGMLTGGASSWYAER 337
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSG----NPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
E N I + GY + G KL++ +EL GT V+C++ + S H D
Sbjct: 338 LISDERNAIFITGYQDEESPGRKLLNVADGLENELELNGTSYQVKCRVGKYGLSAHADAN 397
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATL 195
+ ++ L+P + +LVHG+ + L
Sbjct: 398 EMNRFIQTLNPTYTLLVHGDDEARSQL 424
>gi|338213950|ref|YP_004658007.1| RNA-metabolising metallo-beta-lactamase [Runella slithyformis DSM
19594]
gi|336307773|gb|AEI50875.1| RNA-metabolising metallo-beta-lactamase [Runella slithyformis DSM
19594]
Length = 480
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLISWT 62
CV G+++IP+F++GR Q L L+ + NL + ++ + L +++ Y+ I
Sbjct: 252 CVDIPGRLIIPSFSIGRTQALLYTLNKLYNDHNLPPIKVFADSPLAYESSRVYQRNIRML 311
Query: 63 SQKVKE----TYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
+++ +E + FDF+N+ + R++ + PC++ ++ GM+ GG V H
Sbjct: 312 NREAREFQEENESLFDFENLIYLEKTEASRAISNHTEPCIIISSSGMIQGG---RVEYHV 368
Query: 114 APSEMN---LITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKG 169
A + N I L GYC GT+G +LM+G T+ + G V I ++ FS H D
Sbjct: 369 AQNISNPYCTILLIGYCAEGTLGWRLMNGQTTLRIRGKDEQVLANIEKIDVFSGHGDRDD 428
Query: 170 IMDLVKFLSPQH---VILVHGEKPKMATLKERIQS 201
+++ V+ SP V LVHGE P M KE ++S
Sbjct: 429 LVEFVQKQSPDQLKTVFLVHGETPSMLAFKETLES 463
>gi|293606793|ref|ZP_06689144.1| metallo-beta-lactamase [Achromobacter piechaudii ATCC 43553]
gi|292814797|gb|EFF73927.1| metallo-beta-lactamase [Achromobacter piechaudii ATCC 43553]
Length = 460
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 14/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-----RMNLRVPIYFSAGLTIQA-NMY 54
+ + V GG ++IP+FA+GRAQ +LL W R++ +PIY + + A ++Y
Sbjct: 231 ITRTVKRGGTLVIPSFAVGRAQ---LLLFHLWRLKQSGRISKDLPIYLDSPMASSAVDIY 287
Query: 55 YKML--ISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L ++ + Y A + ++L +P P V+ + GM TGG L KH
Sbjct: 288 LHHLGDQRLSASDARAAYGAAVCVSDVEQSKALDASPMPKVIVSASGMATGGRVLHHLKH 347
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIM 171
+A N + G+ GT G ++ G T+++ G + VR ++ LA S H D I+
Sbjct: 348 YAKDPRNTVLFAGFQAMGTRGAAMLDGARTVKIHGEYVPVRAEVDNLAMLSAHADADEIL 407
Query: 172 DLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ +P+ +VHGE L+ RI+ ELG +C+ +E+ +
Sbjct: 408 RWLRGFTQAPRETFIVHGEPDAADALRLRIKDELGWRCHAVEPDETTVL 456
>gi|374710344|ref|ZP_09714778.1| beta-lactamase domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 916
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 12/211 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYK--- 56
V + +A GG LIPAFALGRAQE+ ++L DY +R + + PIY +T + +Y +
Sbjct: 224 VAEVIAAGGFALIPAFALGRAQEVLLILQDYMDRGLIPQFPIYVDGLVTPISKIYRRYPH 283
Query: 57 MLISWTSQKVKETYNAFDFKN----VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L + ++++ +AF + V DR + P + A+ GML GG S+ +
Sbjct: 284 YLKGPVAHRIQQNGDAFLTEGRCTAVEPKDREQVLKGKPACIVASSGMLIGGASVWYAER 343
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLM----SGNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168
SE N + + GY + G KL+ + +EL G V+C++ + S H D
Sbjct: 344 LVGSEKNAVFITGYQDEESPGRKLLRLAEGESRELELNGVVHQVKCRVDKYGLSAHGDAG 403
Query: 169 GIMDLVKFLSPQHVILVHGEKPKMATLKERI 199
+ + + P ++VHG+ L ERI
Sbjct: 404 ELTRFISMIRPAKTLIVHGDDEARTALLERI 434
>gi|359414339|ref|ZP_09206804.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
gi|357173223|gb|EHJ01398.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
Length = 863
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 16/234 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYK---- 56
V++C GK++IPAFALGRAQE+ ++L + +L+ + G+ N YK
Sbjct: 231 VNECSENNGKMIIPAFALGRAQEVILILKGAINKGSLKKIKIYVDGMVRDVNRVYKNNPL 290
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVFK 111
L + +KV F +N+ ++ +++ P V+ ++ GMLTGG S +
Sbjct: 291 YLRNSLGKKVLRGVEPFYDENIIEVKQTDNRQDILEQKEPVVIISSSGMLTGGPSTFYAE 350
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-------LEGTKIDVRCQIHQLAFSPH 164
AP E I + GY + G K++ T E + G I V+C++ ++ S H
Sbjct: 351 KIAPMENGYIVITGYQDEESPGRKVLELMETDEESDRYLNINGLNIPVKCKVKKIGLSAH 410
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+D I +++ +S +++ILVHG + + +L + I +E + + P E + I
Sbjct: 411 SDKNEIKGVIERISARNIILVHGNEEVVRSLGKEISNEFIGRTFTPGCGEEINI 464
>gi|298674377|ref|YP_003726127.1| KH-domain/beta-lactamase-domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287365|gb|ADI73331.1| KH-domain/beta-lactamase-domain protein [Methanohalobium
evestigatum Z-7303]
Length = 638
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 21/201 (10%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLISWTSQKVK 67
G VLIPAFA+GR+QE+ I+L+D + + VPIY G+ +A + + + +++
Sbjct: 409 GIVLIPAFAVGRSQEVMIVLEDAIRKGLIDDVPIYLD-GMIWEATAIHATYPEYLNNELR 467
Query: 68 ETY-----NAF---DFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
++ N F FK V + + +ID P PCV+ AT GM+ G LE FK +A +E
Sbjct: 468 KSIFQKGQNPFLSDSFKPVDSNELRQKIIDEPHPCVILATAGMMNAGPILEYFKAFASNE 527
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELE-----GTK-IDVRCQIHQL-AFSPHTDGKGI 170
N + GY GT+G ++ G I + GT+ I+V + + FS H+D K +
Sbjct: 528 NNTLVFVGYQADGTLGRRIQKGWKEIPMSSSVNGGTQTINVNMNVEVVDGFSGHSDRKQL 587
Query: 171 MDLVKFLS--PQHVILVHGEK 189
MD VK + P+ V HGE+
Sbjct: 588 MDFVKKMKPRPERVYTEHGEE 608
>gi|304317880|ref|YP_003853025.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779382|gb|ADL69941.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 538
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 21/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCI--------LLDDYWERMNLRVPIYFSAGLTIQAN 52
+ K ++ GG V+IP+FA+GR QEL L D E ++ +VP+Y + L
Sbjct: 233 IKKTISRGGNVVIPSFAVGRTQELLYEIHKLDEELYKDEIEYIS-KVPVYVDSPLATSVT 291
Query: 53 MYYKMLISWTSQKVKETYNA----FDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTG 103
++ + + ++ + DF N+H ++L D P ++ + GM
Sbjct: 292 GVFRKHLDYFDEEARRYVENGDYPLDFPNLHFTHSAEESKALNDLKEPVIIISASGMCEA 351
Query: 104 GFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFS 162
G KH + I GY GT+G +++ G T+ + G +I V +I + +FS
Sbjct: 352 GRIKHHLKHNLWRADSTIVFVGYQAKGTLGRRILDGEKTVNIFGEEITVNAEIENIDSFS 411
Query: 163 PHTDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
H D KG++D + P+ V +VHGE ++I+ EL I P+ ++
Sbjct: 412 GHADQKGLIDWISSFKRKPKKVFIVHGEDKAQKVFSDKIRGELNIDTVIPSKYDT 466
>gi|172065477|ref|YP_001816189.1| beta-lactamase domain-containing protein [Burkholderia ambifaria
MC40-6]
gi|171997719|gb|ACB68636.1| beta-lactamase domain protein [Burkholderia ambifaria MC40-6]
Length = 470
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 17/221 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V+IP F +GRAQE+ Y R+ RVP++ + + Y+
Sbjct: 229 KTFARGGVVVIPCFTVGRAQEIL----HYIARLKASGRMARVPVFLDSPMATDVTEIYRH 284
Query: 58 LISWTSQKVKET----YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I V E + A ++V + +++ + GP V+ A GM TGG L +
Sbjct: 285 HILEHRLTVSEANTLGHAATMVRSV-DQSKAIAEHHGPMVIIAGSGMATGGRVLHHLSRY 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY AGT G L + PT+++ G + VR Q+ + A S H D + I+
Sbjct: 344 APDARNTIALVGYQAAGTRGAALAAHEPTLKIHGDYVRVRAQVESIAALSAHADYEEILT 403
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
+ + +P + HGE L+ RI L C PA
Sbjct: 404 WLGTMQCAPVRTFITHGEPAAADALRRRIAERLHWPCEVPA 444
>gi|70606450|ref|YP_255320.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449066664|ref|YP_007433746.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449068938|ref|YP_007436019.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
gi|68567098|gb|AAY80027.1| hypothetical metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035172|gb|AGE70598.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449037446|gb|AGE72871.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
Length = 631
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 113/219 (51%), Gaps = 21/219 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
++K ++ GGKVLIP ++GR QE+ ++++D + + VP+Y + G+ + +
Sbjct: 395 INKTISKGGKVLIPVLSVGRGQEIMLVINDAMKNKKIPEVPVYIT-GMVDEITAIHTAYP 453
Query: 60 SWTSQKVKETYNAFD--------FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W S++++E D FK + + + P ++ AT GML GG ++E FK
Sbjct: 454 EWLSRELREAILYRDENPFMSEFFKRIEGYKEDIAQGE-PSIIIATSGMLNGGPAVEFFK 512
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFSPH 164
+ A N I Y GT+G K+ G I++ E K+++ + + FS H
Sbjct: 513 NMAHDTRNSIVFVSYQAEGTLGRKVRDGAKDIQILDRDGRVENIKVNMEIGVVE-GFSGH 571
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQS 201
+D + ++ ++ L+ P++++L HGE +++ K ++S
Sbjct: 572 SDRRQLLAFLRNLNVKPKNLVLNHGEPSAISSFKRLVES 610
>gi|292670649|ref|ZP_06604075.1| metallo-beta-lactamase [Selenomonas noxia ATCC 43541]
gi|292647676|gb|EFF65648.1| metallo-beta-lactamase [Selenomonas noxia ATCC 43541]
Length = 536
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQAN-MYYKMLISWTSQ 64
GG V+IP+FA+GR Q L + W+ R+ +PI + L IQA ++ K + +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYNLWKEGRLEGDIPIIIDSPLAIQATRIFLKNYEDFDEE 297
Query: 65 KV-----KETYNAFDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ K T +F + R+L A G ++ + GM G L KH W
Sbjct: 298 TIAFFGEKGTIPSFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI--- 170
P L GY G++G +L+ G + + G +I V+ +I L FS H D I
Sbjct: 358 PESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEISVKARIQMLEGFSAHADAAQIVAW 415
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
M + P LVHGE LKERIQ ELG + Y P
Sbjct: 416 MGAITAPRPAKAFLVHGEGQAQEALKERIQEELGWEVYAP 455
>gi|386012036|ref|YP_005930313.1| Metallo-beta-lactamase family protein [Pseudomonas putida BIRD-1]
gi|313498742|gb|ADR60108.1| Metallo-beta-lactamase family protein [Pseudomonas putida BIRD-1]
Length = 455
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 9 GKVLIPAFALGRAQELCILLDDY-WERMNLRVPIYFSAGLTIQANMYYKMLIS---WTSQ 64
G L+P+FA+GRAQ L L +R+ +PIY ++ + A + Y+ S T+
Sbjct: 235 GITLVPSFAIGRAQLLMYYLYTLKRDRLIPDIPIYLNSPMATDATVLYQQYRSEHRLTAA 294
Query: 65 KVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLP 124
+ + R L P V+ A GM TGG L K AP+ N I
Sbjct: 295 ECAAMCRGTHIIRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSILFS 354
Query: 125 GYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQH 181
G+ GT G +++G ++ L G + +R Q+H + S H D IM+ ++ + P+
Sbjct: 355 GFQAGGTRGADIVAGAHSVRLHGEDVPIRAQVHAMENLSAHADADEIMEWLRGFTRPPRQ 414
Query: 182 VILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++HGE TL+ RI ELG + P E++ I
Sbjct: 415 TYVIHGEPHAADTLRRRISLELGWQVCVPEYQETVAI 451
>gi|124268677|ref|YP_001022681.1| metallo-beta-lactamase [Methylibium petroleiphilum PM1]
gi|124261452|gb|ABM96446.1| metallo-beta-lactamase family protein [Methylibium petroleiphilum
PM1]
Length = 468
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 8/224 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYY--- 55
V V GG VL+P+FA+GRAQ L ++L + +P++ + + A Y
Sbjct: 243 VRATVRRGGSVLLPSFAVGRAQALLLVLQRLKAAGEIPADLPLFLDSPMASTATALYQRH 302
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ L+ T ++ + L P V+ + GM TGG L K AP
Sbjct: 303 RKLLRITPREAATLTDDVTLVAGPEASERLTRQRWPKVIISASGMATGGRVLHHLKALAP 362
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
+ N I PG+ + GT G L+ G +++ G + V+ + L FS H D G+M+ +
Sbjct: 363 NPRNHIVFPGFQVGGTRGAALVGGAREVKIHGEYVAVKATVSHLEGFSGHADADGLMEWL 422
Query: 175 KFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ P+ +VHGE TL+ RIQ ELG + P + ++
Sbjct: 423 RGFETPPERCFVVHGEPVAADTLRLRIQDELGWRVSVPEHGAAL 466
>gi|440492266|gb|ELQ74848.1| putative cleavage and polyadenylation specificity factor (CPSF
subunit), partial [Trachipleistophora hominis]
Length = 181
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 91 PCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI 150
P ++F++PGML G SL++FK E NL+ +PGYC+ T+ L++G T+ LE +
Sbjct: 5 PFIVFSSPGMLHTGNSLKIFKALCEDEKNLVIIPGYCMKNTLAEMLLNGTRTVTLE-REY 63
Query: 151 DVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQ 200
++ Q+ + FS H D I+ + + P++V+LVHG+K +MA K I+
Sbjct: 64 TIKMQVRNIGFSAHADSSSILRFIAKIRPRNVVLVHGDKNRMAKFKRIIE 113
>gi|436835478|ref|YP_007320694.1| beta-lactamase domain protein [Fibrella aestuarina BUZ 2]
gi|384066891|emb|CCH00101.1| beta-lactamase domain protein [Fibrella aestuarina BUZ 2]
Length = 476
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 109/210 (51%), Gaps = 20/210 (9%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDD-YWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
C+ G+++IP+F++GR Q L L+ Y ER + ++ + + +++ Y+ I
Sbjct: 248 CIDIPGRLIIPSFSVGRTQSLLYTLNRLYTERGFQPIKVFSDSPMGLESTKVYQKNIRQL 307
Query: 63 SQKVKETYNA----FDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++ +E Y FDF N + +++ D PC++ ++ GM+ GG V H
Sbjct: 308 SKEAREFYEENETIFDFDNFEFLESTKASKAVSDYNEPCIIISSSGMVQGG---RVEYHV 364
Query: 114 APSEMN---LITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKG 169
A + N I + GYC GT+G +L++G PT+ ++G + V I ++ FS H D
Sbjct: 365 AANIENPYCTILIIGYCAEGTLGWRLLNGQPTLTIKGEEKQVMANIERIDVFSGHGDRDD 424
Query: 170 IMDLVKFLSPQ---HVILVHGEKPKMATLK 196
+++ V+ SP+ +V LVHGE M +
Sbjct: 425 LLNFVRMQSPEQLKNVFLVHGETSSMEAFR 454
>gi|442771046|gb|AGC71744.1| metallo-beta-lactamase family protein, RNA-specific [uncultured
bacterium A1Q1_fos_504]
Length = 456
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V + A GG VLIPAFA+GRAQ + L +R L +PI+ ++ + I A Y+
Sbjct: 231 VRRTAARGGSVLIPAFAVGRAQTVLYYLYQLQQRGELPPLPIFINSPMAIDATAIYREF- 289
Query: 60 SWTSQKVKETYNAF----DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
S + + Y+A F + L P ++ + GM TGG L K AP
Sbjct: 290 SEEHRLSEADYSAMCRLAKFVRTPEESKQLCAQSTPMIVISASGMATGGRVLHHLKAMAP 349
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD-L 173
N I G+ GT G L+ G +++ G + VR ++ + S H D + I+ L
Sbjct: 350 DARNTILFTGFQSGGTRGATLVGGADAVKIHGEYVPVRAEVVNVETMSAHADYEEILGWL 409
Query: 174 VKF-LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
V F P+ V + HGE L++RI LG C P + + +
Sbjct: 410 VHFKRPPRQVFITHGEPAAADALRQRISERLGWHCTVPEFRDQIAL 455
>gi|359415409|ref|ZP_09207872.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
gi|358034266|gb|EHK02708.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
Length = 623
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 12/225 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANM----YYK 56
V + ++ GGKV++P FA+GR+QE+ LL D +R +Y G+ AN Y +
Sbjct: 395 VKQTLSKGGKVIVPVFAVGRSQEVLALLADEMDRSYFDYNVYID-GMINDANALHTAYPE 453
Query: 57 MLISWTSQKVKETYNAFDFKNVH----NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L + KV + + F N+ + +R + C++ T G +TGG + +
Sbjct: 454 FLSNKIQDKVYQDESPFLKDNIKPIGSHSERKEVFEDDACIILTTSGSITGGPVMSYLEK 513
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIM 171
A N + GY G++G K+ G +E+ G ++V ++ FS H+D I+
Sbjct: 514 EASDPDNSLIFVGYQFEGSLGRKIQEGAEEVEINGKNVEVNLDTSSVSGFSAHSDRDQII 573
Query: 172 DLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ K L +P V+ HGE+ K +L + L I P N E
Sbjct: 574 NFAKNLRSTPNRVLTNHGERSKCFSLASSLHKALNIDTSAPQNLE 618
>gi|192289497|ref|YP_001990102.1| beta-lactamase domain-containing protein [Rhodopseudomonas
palustris TIE-1]
gi|192283246|gb|ACE99626.1| beta-lactamase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 454
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYY---KMLI 59
GG V+IPAFA+GR Q L Y+ R+ VPIY + + + A+ + K
Sbjct: 236 GGTVVIPAFAVGRVQALLY----YFARIKSAGGLSNVPIYLDSPMAVDASEIFCRFKADH 291
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMN 119
+ + K T + + + L D+P P V+ + GM TGG L + +AP + N
Sbjct: 292 KLSDDECKTTCSVATYTRSVEDSKRLSDSPIPKVIISASGMATGGRVLHHLRRFAPDQKN 351
Query: 120 LITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKF-- 176
I GY GT G + SG TI + G I + ++ + A S H D I+ +K
Sbjct: 352 TILFAGYQAEGTRGAAMTSGAKTIRIHGKDIPIAAEVRNIDALSAHADADEIVAWLKSGR 411
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++P+ + HGE+ L+ I ELG P + +
Sbjct: 412 IAPRRTFVTHGEQRAAHALRSHIADELGWTSLVPERGQQTAL 453
>gi|15789650|ref|NP_279474.1| mRNA 3'-end processing factor-like protein [Halobacterium sp.
NRC-1]
gi|169235363|ref|YP_001688563.1| mRNA 3'-end processing factor-like protein [Halobacterium salinarum
R1]
gi|10580012|gb|AAG18954.1| mRNA 3'-end processing factor homolog [Halobacterium sp. NRC-1]
gi|167726429|emb|CAP13214.1| beta-lactamase domain protein [Halobacterium salinarum R1]
Length = 641
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 22/237 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+++ GGKVLIPAFA+GR+QE+ ++L++ + +PI+ G+ +A +
Sbjct: 403 INETYEDGGKVLIPAFAVGRSQEMMLVLEEAMREGEIPEMPIHLD-GMIWEATAIHTTYP 461
Query: 60 SWTSQKVKETY-----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ +++ N F ++ D R + C++ +T GM++GG +
Sbjct: 462 EYLRDDLRDRIFHSDSNPFLAPQFNHIDGGEEERQAVADDDQCIILSTSGMVSGGPIMSW 521
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL--------AF 161
+H AP + +T GY GT+G ++ SG I + ++ R + QL F
Sbjct: 522 LEHIAPDPDSTLTFVGYQAQGTLGRRIQSGRDKIPMPDSRSGGRTEHLQLNMGVETVDGF 581
Query: 162 SPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S H D +G+ D V+ ++ P+ V+ VHG++ L + E ++ + P N E+
Sbjct: 582 SGHADRQGLEDFVRTMNPRPEKVLCVHGDESSTQDLSSALYHEFNMRTFAPKNLETF 638
>gi|333897915|ref|YP_004471789.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113180|gb|AEF18117.1| beta-lactamase domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 820
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM----LI 59
+ GGKVLIPAFALGRAQE+ ++L + + +Y G+ YK+ L
Sbjct: 220 VIKNGGKVLIPAFALGRAQEIILILKKAINKGMIETKVYVD-GMVKDICRIYKLNPNYLR 278
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDA---PGPCVLFATPGMLTGGFSLEVFKHWAPS 116
++K+ + F N+ D+S + PCV+ ++ GMLTGG S + A
Sbjct: 279 ESLAKKIFKGGEIFFDDNIMPVDKSEMREEIIKEPCVIVSSSGMLTGGPSQWYAEKLAGD 338
Query: 117 EMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSPHTDGKGI 170
E NLI + GY + G KL+ + ++L +I ++C + + S H D I
Sbjct: 339 EKNLIAITGYQDEESPGRKLLELTDEKDDDKKLKLADKEIPIKCAVDKFGLSAHADMSEI 398
Query: 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ L L P+ V L+HG+ + L + IQ ++ Y P N +
Sbjct: 399 LSLANILHPKKVFLIHGDPDTINFLGKEIQKDINTDVYVPQNGD 442
>gi|300121617|emb|CBK22135.2| unnamed protein product [Blastocystis hominis]
Length = 545
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 6/189 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GKVLIP + +G QEL + D W NL PIYFS+ T + S
Sbjct: 228 VLSTIQNRGKVLIPCYGIGHTQELLAMFLDLWNSKNLTTPIYFSSQDTKSTLPLFSYYSS 287
Query: 61 WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
WTS + + + F + P +LFAT +T G S VF A + N+
Sbjct: 288 WTSHPL-----SLQSDRIQPFRMEFAASEEPFLLFATHPTMTSGVSKAVFPSIAGNPKNM 342
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQ 180
+ G TI ++M+ +P + L+G I V CQ + FS H D K L++
Sbjct: 343 VIFLGQNSPDTIAGQIMN-SPAVTLDGKNIPVLCQRKIVPFSAHPDRKANCRLIERTGAS 401
Query: 181 HVILVHGEK 189
V+L+HG+K
Sbjct: 402 CVVLIHGDK 410
>gi|301058011|ref|ZP_07199066.1| metallo-beta-lactamase domain protein [delta proteobacterium
NaphS2]
gi|300447837|gb|EFK11547.1| metallo-beta-lactamase domain protein [delta proteobacterium
NaphS2]
Length = 432
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ K +A GGKVLIPAFALGR QEL +D + + + RVP++ + L ++ Y L
Sbjct: 211 LQKALADGGKVLIPAFALGRTQELLYEMDRVFGKGDFRVPVFLDSPLGLEITKVYSSLSQ 270
Query: 61 WTSQKVK----ETYNAFDFKNVHNFDR-----SLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ Q+ + + DF ++ R L GP V+ A GM TGG + +
Sbjct: 271 YWDQEARGHLSRGDHPIDFDGLYAVRRHSDHMDLQRTDGPMVILAGSGMCTGGRIVNHIR 330
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMS--GNPT--IELEGTKIDVRCQIHQLA-FSPHTD 166
N + GY + GT G +++ G P + LEG ++ +R +H +A +S H D
Sbjct: 331 EGIEKPENDMLFVGYQVPGTPGRDILTYCGKPGGYVMLEGERLAIRAGVHLMAGYSAHAD 390
Query: 167 GKGIMDLVKFLSPQ-HVILVHGEKPKMATLKERIQSELGIK 206
G++ V + + + LVHG+ L E + ELGI+
Sbjct: 391 RNGLVAWVNAMVGRPRIKLVHGDGQARRALGEAL--ELGIR 429
>gi|119715244|ref|YP_922209.1| beta-lactamase domain-containing protein [Nocardioides sp. JS614]
gi|119535905|gb|ABL80522.1| beta-lactamase domain protein [Nocardioides sp. JS614]
Length = 460
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V + + GG VL+PAFA+ R + + + L E + RVP++ + + ++A Y+ +
Sbjct: 229 VRRTIGRGGTVLVPAFAVDRTELVLLELHRLMEAGEVPRVPVHLDSPMALRALTVYREAL 288
Query: 60 SWTS-------QKVKETYNAFDFKNVHNFDRSL-IDAPG-PCVLFATPGMLTGGFSLEVF 110
S +V+ A V + S+ ++ PG PC++ + GM TGG +
Sbjct: 289 DTGSVQLRPDLDQVRAALGAMHVDAVPDVAGSMRLNRPGKPCIVVSASGMATGGRVVHHL 348
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKG 169
H P N + L GY GT G +L+ G +++ G + VR +I + FS H D
Sbjct: 349 AHQLPDPRNTVVLTGYQAVGTRGRQLLDGARQVKMHGRYVPVRAEIVDVPYFSVHADAD- 407
Query: 170 IMDLVKFLS-----PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D+V +L P+ V +VHGE A L RI +LG P E +
Sbjct: 408 --DIVGWLGRAPEPPEIVYVVHGEPAASAALARRITEDLGWPAVVPRLGERV 457
>gi|300778243|ref|ZP_07088101.1| beta-lactamase family protein [Chryseobacterium gleum ATCC 35910]
gi|300503753|gb|EFK34893.1| beta-lactamase family protein [Chryseobacterium gleum ATCC 35910]
Length = 464
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKML 58
++ + GG ++IP FA+GRAQE+ +L + + ++ VP+ + + A
Sbjct: 230 INLTIKAGGNIIIPCFAVGRAQEILYILQELKDSNKIPAGVPVILDSPMAASATEIMVRY 289
Query: 59 ISWT---SQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+T QK + + + +I ++ A GM+TGG LE KH+
Sbjct: 290 SDYTLVDRQKWNDIIGKIYITKDYTETQEIIAQKQSKIVIAGSGMITGGRVLEYLKHYIG 349
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
N + + G+ GT G L++ + +++ G DVR I ++ S H D ++D V
Sbjct: 350 DSRNTVLIVGFQAEGTRGRALLNQSHELKMHGKYYDVRAHIAEITGLSAHADQSELIDWV 409
Query: 175 KF--LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
K + P+ ++LVHGE + L+ +IQ+EL I P +E + +
Sbjct: 410 KKYEIPPKQIMLVHGEPSALEALRVKIQTELQIPVNIPKKDEEIIL 455
>gi|26990009|ref|NP_745434.1| metallo-beta-lactamase [Pseudomonas putida KT2440]
gi|24984930|gb|AAN68898.1|AE016521_7 metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
Length = 455
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 7/217 (3%)
Query: 9 GKVLIPAFALGRAQELCILLDDY-WERMNLRVPIYFSAGLTIQANMYYKMLIS---WTSQ 64
G L+P+FA+GRAQ L L +R+ +PIY ++ + A Y+ S T+
Sbjct: 235 GITLVPSFAVGRAQLLMYYLYTLKRDRLIPDIPIYLNSPMATDATALYQQYRSEHRLTAA 294
Query: 65 KVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLP 124
+ + R L P V+ A GM TGG L K AP+ N I
Sbjct: 295 ECAAMCRGTHIVRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSILFS 354
Query: 125 GYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQH 181
G+ GT G +++G ++ L G + +R Q+H + S H D IM+ ++ + P+
Sbjct: 355 GFQAGGTRGADIVAGAHSVRLHGEDVPIRAQVHAMENLSAHADADEIMEWLRGFTRPPRQ 414
Query: 182 VILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++HGE TL+ RI ELG + P E++ I
Sbjct: 415 TYVIHGEPHAADTLRRRISLELGWQVCVPEYQETVAI 451
>gi|167566691|ref|ZP_02359607.1| metallo-beta-lactamase family protein [Burkholderia oklahomensis
EO147]
Length = 459
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP+Y + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILHYIAQLKKTGRMPHVPVYLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L + +AP
Sbjct: 289 HRLTMSDADAIGHAATMVRTIEQSKAIADHNGPMVIIAGSGMATGGRVLHHIERYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N I L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTILLVGYQAAGTRGAALAAHEPTVKIHGEYVRVRAQVEMISSLSAHADYSEILAWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L C P+ ES+
Sbjct: 409 SSAPARTFVTHGEPAAADALRRRIEESLHWHCEVPSYLESV 449
>gi|148547684|ref|YP_001267786.1| beta-lactamase domain-containing protein [Pseudomonas putida F1]
gi|395449495|ref|YP_006389748.1| beta-lactamase domain-containing protein [Pseudomonas putida ND6]
gi|397698313|ref|YP_006536196.1| beta-lactamase domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|421521140|ref|ZP_15967799.1| beta-lactamase domain-containing protein [Pseudomonas putida LS46]
gi|148511742|gb|ABQ78602.1| beta-lactamase domain protein [Pseudomonas putida F1]
gi|388563492|gb|AFK72633.1| beta-lactamase domain-containing protein [Pseudomonas putida ND6]
gi|397335043|gb|AFO51402.1| beta-lactamase domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|402755080|gb|EJX15555.1| beta-lactamase domain-containing protein [Pseudomonas putida LS46]
Length = 455
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 7/217 (3%)
Query: 9 GKVLIPAFALGRAQELCILLDDY-WERMNLRVPIYFSAGLTIQANMYYKMLIS---WTSQ 64
G L+P+FA+GRAQ L L +R+ VP+Y ++ + A Y+ S T+
Sbjct: 235 GITLVPSFAVGRAQLLMYYLYTLKRDRLIPDVPVYLNSPMATDATALYQQYRSEHRLTAA 294
Query: 65 KVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLP 124
+ + R L P V+ A GM TGG L K AP+ N I
Sbjct: 295 ECAAMCRGTHIVRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSILFS 354
Query: 125 GYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQH 181
G+ GT G +++G ++ L G + +R Q+H + S H D IM+ ++ + P+
Sbjct: 355 GFQAGGTRGADIVAGAHSVRLHGEDVPIRAQVHAMENLSAHADADEIMEWLRGFTRPPRQ 414
Query: 182 VILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++HGE TL+ RI ELG + P E++ I
Sbjct: 415 TYVIHGEPHAADTLRRRISLELGWQVCVPEYQETVAI 451
>gi|448307837|ref|ZP_21497725.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
gi|445594972|gb|ELY49098.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
Length = 636
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 18/237 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGL---TIQANMYYK 56
+H+ G +IPAFA+GR+QEL ++L++ +L +P+Y + T Y +
Sbjct: 400 IHETYKKDGITVIPAFAVGRSQELMLVLEEAMREGDLPTMPVYLDGMIREATAIHTAYPE 459
Query: 57 MLISWTSQKV-KETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L Q++ E N F + D R I + PCV+ +T GM+TGG +
Sbjct: 460 YLRDGLRQRILHEDENPFIAEQFRQVDGGQEMREEIASGEPCVILSTSGMVTGGPIMSWL 519
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-----TKIDVRCQIHQLA-FSPH 164
+ P+ N + GY AGT+G ++ SG+ I +EG + + +I ++ FS H
Sbjct: 520 ELLGPNPNNTLLFVGYQAAGTLGRRIQSGHTEIPMEGRSGRANHLTLAFRIESVSGFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219
D G+ VK ++ P+ ++ VHG++ L + + ++ Y P N E+ P
Sbjct: 580 ADRAGLKKYVKEMNPRPETILCVHGDEQATDQLSSALYQQYNVRTYSPKNLETFRFP 636
>gi|90415172|ref|ZP_01223120.1| putative nuclease, partial [Photobacterium profundum 3TCK]
gi|90323706|gb|EAS40339.1| putative nuclease [Photobacterium profundum 3TCK]
Length = 221
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 12/205 (5%)
Query: 11 VLIPAFALGRAQELCILLDDYWERMNLRV-PIYFSAGLTIQA----NMYYKMLISWTSQK 65
VLIP+FA+ R QE+ +L+ + L V ++ + + I+A N Y+ L + +
Sbjct: 2 VLIPSFAIERTQEILLLIKQMYYDKELPVCKVFLDSPMAIRATQIYNNYHAELNASADKL 61
Query: 66 VKETYNAFDF----KNVHNFDRSLID-APGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
+ FDF ++ D +LI+ C++ A GM TGG L FKH + N
Sbjct: 62 LLRDGTVFDFPYLQYSLKAKDSTLINNEESGCIIIAGSGMCTGGRILHHFKHRLWDDRNS 121
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMD-LVKFLS 178
+ GY + GT+G +++ G +I+L KI+V QIH L+ FS H D ++ + +F
Sbjct: 122 VIFVGYQVKGTLGRQMIDGAESIQLYHEKINVNAQIHMLSGFSAHADQSDLLAWMSEFEQ 181
Query: 179 PQHVILVHGEKPKMATLKERIQSEL 203
+ + L+HGE K A KE I+ +L
Sbjct: 182 LEKIYLIHGEPDKQAVFKEVIKEQL 206
>gi|119946225|ref|YP_943905.1| beta-lactamase domain-containing protein [Psychromonas ingrahamii
37]
gi|119864829|gb|ABM04306.1| beta-lactamase domain protein [Psychromonas ingrahamii 37]
Length = 465
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 12/213 (5%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDD-YWERMNLRVPIYFSAGLTIQANMYYKMLISW 61
K + G VLIP+FA+ R QE+ +LL Y+++ + ++ + + ++A Y S
Sbjct: 238 KTLNNKGNVLIPSFAIERTQEILLLLKQMYYDKELPKCQVFLDSPMAMRATQIYTRYHSE 297
Query: 62 TSQKVKETY----NAFDFKNVH----NFDRSLID-APGPCVLFATPGMLTGGFSLEVFKH 112
++ K+ FDF + N D LI+ C++ A GM TGG L+ FKH
Sbjct: 298 LNEPAKKLLERDGTIFDFPYLQYALKNQDSMLINNIESGCIIIAGSGMCTGGRILQHFKH 357
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIM 171
N + GY + T+G K++ G TI+L I V QIH + FS H D ++
Sbjct: 358 RLWDARNSVIFVGYQVQDTLGRKMIDGAETIQLYHENIKVNAQIHMINGFSAHADQSDLL 417
Query: 172 DLV-KFLSPQHVILVHGEKPKMATLKERIQSEL 203
+ +F V L+HGE K A K+ I+ +L
Sbjct: 418 AWISEFEKLDKVFLIHGEPDKQAIFKQIIEEQL 450
>gi|384430336|ref|YP_005639696.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
gi|333965804|gb|AEG32569.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
Length = 431
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKV IP FA+ RAQE+ +L + R+ R PIY + + + Y L+ +
Sbjct: 210 KTLSQGGKVFIPTFAVERAQEVLYVLYTHGHRLP-RAPIYLDSPMAGRVLALYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L APGP V+ A GMLTGG L KH
Sbjct: 269 SEEVQAHFLRGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLTGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L FS H ++D
Sbjct: 329 LSDPRNALVFVGYQPRGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|392403092|ref|YP_006439704.1| RNA-metabolising metallo-beta-lactamase [Turneriella parva DSM
21527]
gi|390611046|gb|AFM12198.1| RNA-metabolising metallo-beta-lactamase [Turneriella parva DSM
21527]
Length = 454
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 6 AGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQAN---MYYKMLISW 61
A GG ++IPAFA+GRAQ L L + + + P+Y ++ + A+ M ++ L
Sbjct: 234 ARGGVIIIPAFAVGRAQVLMYHLSELRKAGRIPEFPMYLNSPMAESASDLLMKFRDLHRL 293
Query: 62 TSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
+ + + T N + + R L D GP ++ + GMLTGG L K +A E N+I
Sbjct: 294 SVEDCEATCNIVKYIHTPEHSRWLNDQKGPMLIISASGMLTGGRVLHHIKAFAGDERNVI 353
Query: 122 TLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKF--LS 178
L GY AGT G L G I++ G + +R Q+ +L S H D I+ ++ +
Sbjct: 354 LLTGYQAAGTRGEALQRGAEQIKIHGDYVTIRAQVRELENISAHADYGEIISWLESCNIG 413
Query: 179 PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
P+ V + HGE L+ R+ + G P
Sbjct: 414 PRRVFVTHGEPVAADDLRRRLIDKFGWHAMVP 445
>gi|46200035|ref|YP_005702.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
gi|46197663|gb|AAS82075.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
Length = 431
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+ +
Sbjct: 210 KTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLALYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L APGP V+ A GML GG L KH
Sbjct: 269 SEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L FS H ++D
Sbjct: 329 LSDPRNALVFVGYQPRGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|305662491|ref|YP_003858779.1| KH-domain/beta-lactamase-domain-containing protein [Ignisphaera
aggregans DSM 17230]
gi|304377060|gb|ADM26899.1| KH-domain/beta-lactamase-domain protein [Ignisphaera aggregans DSM
17230]
Length = 641
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 17/209 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGL---TIQANMYYKMLISWTS 63
GGKVLIP+ ++GRAQE+ ++L D ++ L ++P+Y + T Y +L
Sbjct: 406 GGKVLIPSLSVGRAQEVMLILADAMKQNKLPKIPVYIEGMIHEVTAIHTAYPDLLSKELG 465
Query: 64 QKVKETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
Q++K N FD++ + ++++ P ++ AT GMLTGG ++E FK A +
Sbjct: 466 QRLKSGENPFDYETFIRLEGREPRTEIVESSEPAIIIATSGMLTGGPAVEYFKLMASNPN 525
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTK-----IDVRCQIHQL-AFSPHTDGKGIMD 172
+ + Y + GT+G ++ G + + I ++ Q++ + FS H+D +++
Sbjct: 526 HSLVFVSYQVEGTLGRRIRDGAREVAFVNERGKVEVIRIKMQVYSIEGFSGHSDRPQLLE 585
Query: 173 LVKFLSPQ--HVILVHGEKPKMATLKERI 199
++ + P+ ILVHGEK + L I
Sbjct: 586 YLRHIEPKPSTAILVHGEKNAVMNLANEI 614
>gi|227499050|ref|ZP_03929187.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus sp. D21]
gi|226904499|gb|EEH90417.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus sp. D21]
Length = 538
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ ++ GG ++IPAFA+GR Q + L VPI + + I+A
Sbjct: 235 IKDALSRGGNIIIPAFAVGRTQVMLYYFQKLMSSGKLPTVPIMVDSPMAIKATKVMLFNP 294
Query: 60 SWTSQKVKETYNA-----FDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ + Y D NVH + R++ D P P ++ + GM G L
Sbjct: 295 DEYDEEARSIYQKQGGRLIDMPNVHYTETPEESRAINDMPSPMIIISASGMADAGRVLHH 354
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
KH + + + GY G++G +L+ G +++ G +I V +I+ + FS H D
Sbjct: 355 LKHNLWRKDSSVIFAGYQAEGSLGRQLVDGAKKVKIMGEEIVVGAKIYNMTGFSAHADKH 414
Query: 169 GIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHY 223
+MDL K + P +VHGE AT E +++ELG Y P ++ I T +
Sbjct: 415 QMMDLYKGMIRRPNAFFVVHGEYDSAATFAELLRTELGTAAYIPNYGDTAVIDGTQW 471
>gi|383320534|ref|YP_005381375.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
gi|379321904|gb|AFD00857.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
Length = 637
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 20/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ K + GGKVLIP FA+GR+QE+ I+L++ + + +VP+Y G+ +A +
Sbjct: 401 IKKTLQRGGKVLIPTFAVGRSQEVMIVLEEAIRKGFIDKVPVYLD-GMIWEATAIHTTYP 459
Query: 60 SWTSQKVKETY-----NAF---DFKNVHNFDR--SLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + ++++ N F F V + + +++ P PC++ AT GM+ GG +E
Sbjct: 460 EYLNVELQDMIFHKGQNPFLSPAFVQVDSPQKREAILADPSPCIVLATSGMMNGGPVMEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQLA----FSP 163
FK + + N + GY GT+G ++ G I + EG K +V ++A FS
Sbjct: 520 FKQYGADKKNTLIFVGYQAEGTMGRRIQKGWTEIPISTEGGKTEVMKVEMEVATVDGFSG 579
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + +M+ VK + P+ +I HG++ K L I + + P N E++
Sbjct: 580 HSDRRQLMEWVKRMDPRPERIITNHGDENKCLDLASSIYKKFKYETRSPMNLETI 634
>gi|352684970|ref|YP_004896955.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus intestini
RyC-MR95]
gi|350279625|gb|AEQ22815.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus intestini
RyC-MR95]
Length = 535
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ ++ GG ++IPAFA+GR Q + L VPI + + I+A
Sbjct: 232 IKDALSRGGNIIIPAFAVGRTQVMLYYFQKLMSSGKLPTVPIMVDSPMAIKATKVMLFNP 291
Query: 60 SWTSQKVKETYNA-----FDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ + Y D NVH + R++ D P P ++ + GM G L
Sbjct: 292 DEYDEEARSIYQKQGGRLIDMPNVHYTETPEESRAINDMPSPMIIISASGMADAGRVLHH 351
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
KH + + + GY G++G +L+ G +++ G +I V +I+ + FS H D
Sbjct: 352 LKHNLWRKDSSVIFAGYQAEGSLGRQLVDGAKKVKIMGEEIVVGAKIYNMTGFSAHADKH 411
Query: 169 GIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHY 223
+MDL K + P +VHGE AT E +++ELG Y P ++ I T +
Sbjct: 412 QMMDLYKGMIRRPNAFFVVHGEYDSAATFAELLRTELGTAAYIPNYGDTAVIDGTQW 468
>gi|55980221|ref|YP_143518.1| metallo-beta-lactamase [Thermus thermophilus HB8]
gi|81600562|sp|Q5SLP1.1|RNSE_THET8 RecName: Full=Ribonuclease TTHA0252
gi|301598475|pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598476|pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598477|pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598478|pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598479|pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598480|pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598481|pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598482|pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598483|pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598484|pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598485|pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598486|pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|55771634|dbj|BAD70075.1| metallo-beta-lactamase superfamily protein [Thermus thermophilus
HB8]
Length = 431
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+ +
Sbjct: 210 KTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L APGP V+ A GML GG L KH
Sbjct: 269 SEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L FS H ++D
Sbjct: 329 LSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|374296036|ref|YP_005046227.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Clostridium clariflavum DSM 19732]
gi|359825530|gb|AEV68303.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Clostridium clariflavum DSM 19732]
Length = 541
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 18/245 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN------LRVPIYFSAGLTIQANMY 54
+++ + GG V+IP+FA+GR QE+ L+ E + +P++ + L I A
Sbjct: 233 INETIDKGGNVVIPSFAVGRTQEVIYELNKEKESFDGKLKKLFSIPVFVDSPLAISATEV 292
Query: 55 YKMLISWTSQKVKETYNAFD---------FKNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
++ + ++ +E N D F ++L + G ++ + GM G
Sbjct: 293 FRNNLDCYDEEAREYINNGDNPLDFPGLQFTRTPEESKTLNERSGSAIIISASGMCEAGR 352
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
KH E + I GY GT+G KL+ G +++ G +I V +I + FS H
Sbjct: 353 IKHHLKHNLWREESTILFVGYQAQGTLGRKLIDGAKKVKIFGEEISVNARIEMIEGFSGH 412
Query: 165 TDGKGIMDLVK--FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 222
D G+++ ++ + P + +VHGE+ M + I I P ES I
Sbjct: 413 ADKDGLLNWIEAFYKKPSKIFIVHGEEESMTSFAREINDRFNIDTIIPEKGESFVITGDK 472
Query: 223 YVKAG 227
+++
Sbjct: 473 VIESA 477
>gi|255311752|pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311753|pdb|3A4Y|B Chain B, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311754|pdb|3A4Y|C Chain C, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311755|pdb|3A4Y|D Chain D, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 13/199 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+
Sbjct: 208 LEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVR 266
Query: 61 WTSQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ S++V+ + N F + + ++L APGP V+ A GML GG L K
Sbjct: 267 YFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLK 326
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
H N + GY G +G ++++ P + + G ++ +R +H L FS H +
Sbjct: 327 HGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDEL 386
Query: 171 MDLVKFLSPQHVILVHGEK 189
+D ++ V+LVHGE+
Sbjct: 387 LDWLQ--GEPRVVLVHGEE 403
>gi|118591606|ref|ZP_01549003.1| Beta-lactamase-like protein [Stappia aggregata IAM 12614]
gi|118435934|gb|EAV42578.1| Beta-lactamase-like protein [Stappia aggregata IAM 12614]
Length = 454
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 15/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQA-NMY---- 54
+ K GG V+IP+FA+GRAQ L ++ + + +PI+ + + + A N+Y
Sbjct: 229 ITKTARRGGTVVIPSFAVGRAQSLLFHIESLKKTGRIPDLPIFLDSPMAVSASNIYGKHP 288
Query: 55 --YKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+++ + D + + DR+ + P V+ + GM TGG L KH
Sbjct: 289 DDHRLTPEECDWSNGAAHYVADVEESKDLDRNRM----PKVIVSASGMATGGRVLHHLKH 344
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIM 171
+AP N+I G+ GT G + SG ++ + G + +R ++ L S H D IM
Sbjct: 345 YAPDHRNMILFAGFQAGGTRGATMTSGATSVRIHGADVPIRAEVGNLHMLSAHADADEIM 404
Query: 172 DLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ P+ + HGE L+ RI+SEL C+ P E + +
Sbjct: 405 QWLGNFERPPKMTFITHGEPDAADVLRYRIESELDWPCWLPDYREDVLL 453
>gi|434385192|ref|YP_007095803.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
gi|428016182|gb|AFY92276.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
Length = 885
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 15/206 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM---LI 59
+ V GG VLIPAFALGRAQE+ + + ++ VP+Y GL + ++ L+
Sbjct: 507 EVVQAGGNVLIPAFALGRAQEIILAIRTSALFHSINVPVYVD-GLVREVTDLFQTQLELL 565
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDAPG--------PCVLFATPGMLTGGFSLEVFK 111
+ Q +T + F F + I +P P V+ A+ GMLTGG S+ K
Sbjct: 566 PTSVQNFAKTQSPF-FSEKSSPRIISIASPKERPLAIAHPSVIIASSGMLTGGASIGYAK 624
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNP--TIELEGTKIDVRCQIHQLAFSPHTDGKG 169
E + + GY + G L S P IEL+GT + VR +I + S H D G
Sbjct: 625 ILLERENAAVFISGYTDEESPGRFLQSLEPGSEIELDGTALTVRAKIQRFNLSAHADRVG 684
Query: 170 IMDLVKFLSPQHVILVHGEKPKMATL 195
I ++ ++PQH+IL+HG + + L
Sbjct: 685 ITQVIHRVNPQHLILIHGSQSALHEL 710
>gi|390933363|ref|YP_006390868.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568864|gb|AFK85269.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 820
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
+ V GGKVLIPAFALGRAQE+ ++L + + +Y G+ YK+
Sbjct: 217 IGSVVKNGGKVLIPAFALGRAQEIILILKKAINKGMINTKVYVD-GMVKDICRIYKLNPN 275
Query: 58 -LISWTSQKVKETYNAFDFKNVHNFD----RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L ++K+ + F NV D R I PCV+ ++ GMLTGG S +
Sbjct: 276 YLRENLAKKIFKGGEIFFDGNVMPVDMPEMREEI-IKEPCVIVSSSGMLTGGPSQWYAEK 334
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSPHTD 166
A E NLI + GY + G +L+ + ++L +I V+C + + S H D
Sbjct: 335 LAGDEKNLIAITGYQDEESPGRRLLELTDEKDDDKKLKLGDKEIPVKCAVDKFGLSAHAD 394
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
I+ LV FL P+ V L+HG+ + L +Q ++ Y P N +
Sbjct: 395 MSEILSLVNFLYPKKVFLIHGDPDVIDFLGREVQRDIRTDVYVPQNGD 442
>gi|336121871|ref|YP_004576646.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
gi|334856392|gb|AEH06868.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
Length = 422
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 6/215 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ K + GGKV+IP FA+GRAQE+ ++ +Y L+ VP+Y L I A Y
Sbjct: 202 ISKTIEKGGKVIIPVFAVGRAQEIMAIISNYMRSGLLKNVPVYVDGSL-IHATGVYLSYS 260
Query: 60 SWTSQKVKETY-NAFD-FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
W + K++ N + F +V +R +ID C++ +T GM+ GG L+ K +
Sbjct: 261 EWLNPKIRNGLENRINPFGDVKKANRQIIDKEDSCIVISTSGMVQGGPVLQYLKLLKDPK 320
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD-LVKF 176
N I L GY T+G +L G I K+ + ++ ++ FS H D ++ L K
Sbjct: 321 -NKIILTGYQAEDTLGRQLEEGAKEITPFKNKLPINGEVVKIEFSAHGDYNSLIRYLKKI 379
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
P+ V ++HGE+ + +L I I P
Sbjct: 380 PKPKKVFVMHGERYQALSLAMTIWKNFKIPSTAPT 414
>gi|288561234|ref|YP_003424720.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
gi|288543944|gb|ADC47828.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
Length = 636
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 19/229 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
++K + GGKVL+P FA+GRAQEL I+L++Y + VPI+ G+ +A +
Sbjct: 401 IYKTIKRGGKVLLPVFAVGRAQELMIVLEEYMHHDIIETVPIHLD-GMIWEATAVHTARP 459
Query: 60 SWTSQKVKE-----TYNAF---DFKNV-HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ S+++++ + N F F V +N +R I P ++ +T GM+TGG S+E F
Sbjct: 460 EYLSKELRDQILHMSRNPFMTESFNQVQNNAERKEIVEGEPSIILSTSGMMTGGNSVEYF 519
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG----TKI-DVRCQIHQL-AFSPH 164
K + N + GY G++G K+ G+ + E T++ +V ++ + FS H
Sbjct: 520 KWLCEDKKNTLIFVGYQSEGSLGRKIQKGHKQLPFEDEDGKTRVFNVEMEVKTIEGFSGH 579
Query: 165 TDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPA 211
++ + +M+ K L P+ +I HG+ K L I ++ P
Sbjct: 580 SNRRQLMEFAKRLHPRPDKIITCHGDPYKTVDLASSIHRSFKVETKTPV 628
>gi|386359601|ref|YP_006057846.1| beta-lactamase fold exonuclease [Thermus thermophilus JL-18]
gi|383508628|gb|AFH38060.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus thermophilus JL-18]
Length = 431
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+ +
Sbjct: 210 KTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L PGP V+ A GMLTGG L KH
Sbjct: 269 SEEVQAHFLQGKNPFRPAGLEVVEHAEASKALNREPGPMVVLAGSGMLTGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L FS H ++D
Sbjct: 329 LSDPRNALVFVGYQPRGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|54303081|ref|YP_133074.1| nuclease [Photobacterium profundum SS9]
gi|46916509|emb|CAG23274.1| putative nuclease [Photobacterium profundum SS9]
Length = 465
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 18/210 (8%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLRV-PIYFSAGLTIQA----NMYYKMLISWTS 63
G VLIP+FA+ R QE+ +L+ + L V ++ + + I+A N Y+ L + S
Sbjct: 244 GNVLIPSFAIERTQEVLLLIKQMYYDKELPVCKVFLDSPMAIRATQIYNNYHAELNASAS 303
Query: 64 QKVKETYNAFDFK----NVHNFDRSLIDAP-GPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
+ + FDF ++ D LI+ C++ A GM TGG L FKH +
Sbjct: 304 KLLLRDGTVFDFPYLQYSLKAKDSMLINKKESGCIIIAGSGMCTGGRILHHFKHRLWDDR 363
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + GY + GT+G +++ G +I+L KI+V +IH L FS H D DLV ++
Sbjct: 364 NSVIFVGYQVKGTLGRQMIDGAESIQLFHEKINVNAKIHMLNGFSAHADQS---DLVAWM 420
Query: 178 SP----QHVILVHGEKPKMATLKERIQSEL 203
S + + L+HGE K A K+ I+ +L
Sbjct: 421 SEFEQLEKIYLIHGEPDKQAVFKDVIKEQL 450
>gi|357618297|gb|EHJ71333.1| putative cleavage and polyadenylation specificity factor [Danaus
plexippus]
Length = 385
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 90 GPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGT 148
GPCV+ A+PGM+ G S E+F+ W N + + GYC+ GT+ ++S I + G
Sbjct: 29 GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQ 88
Query: 149 KIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL--GIK 206
K+ ++ + ++FS HTD + + + L P HV+LVHGE+ +M+ LK +Q E +
Sbjct: 89 KLPLKMSVDYISFSAHTDYQQTSEFINILKPPHVVLVHGEQNEMSRLKAALQREHRGRLA 148
Query: 207 CYDPANNESMCI 218
+ P N + + +
Sbjct: 149 IHTPRNTQQLAL 160
>gi|304317834|ref|YP_003852979.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779336|gb|ADL69895.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 820
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKM--- 57
+ V GGKVLIPAFALGRAQE+ ++L + + +Y G+ YK+
Sbjct: 217 IGSVVKNGGKVLIPAFALGRAQEIILILKKAINKGMINTKVYVD-GMVKDICRIYKLNPN 275
Query: 58 -LISWTSQKVKETYNAFDFKNVHNFD----RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
L ++K+ + F NV D R I PCV+ ++ GMLTGG S +
Sbjct: 276 YLRENLAKKIFKGGEIFFDDNVMPVDIPEMREEI-IKEPCVIVSSSGMLTGGPSQWYAEK 334
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMS------GNPTIELEGTKIDVRCQIHQLAFSPHTD 166
A E NLI + GY + G +L+ + ++L +I V+C + + S H D
Sbjct: 335 LAGDEKNLIAITGYQDEESPGRRLLELTDEKDDDKKLKLGDKEIQVKCAVDKFGLSAHAD 394
Query: 167 GKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
I+ V FL P+ V L+HG+ + L +Q ++ Y P N +
Sbjct: 395 MSEILSFVNFLYPKKVFLIHGDPDVIDFLGREVQRDIRTDVYVPQNGD 442
>gi|224369116|ref|YP_002603280.1| metallo-beta-lactamase family protein [Desulfobacterium
autotrophicum HRM2]
gi|223691833|gb|ACN15116.1| metallo-beta-lactamase family protein (RNase) [Desulfobacterium
autotrophicum HRM2]
Length = 430
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 20/218 (9%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDY---WERMNLRVPIYFSAGLTIQANMYYKMLI 59
K ++ GKV +P FALGR QEL +D WE+ ++P++ + L +Q Y L
Sbjct: 214 KALSDNGKVFVPVFALGRCQELIYEMDRIFGGWEQAE-KIPVFVDSPLGLQITNIYSKLS 272
Query: 60 SWTSQKVKETYNA----FDFKNV-----HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + K +A DFKN+ H L D GP V+ A GM TGG +
Sbjct: 273 EYWDGEAKALLDAGDHPIDFKNLYAVENHGSHAQLTDIKGPAVILAGSGMCTGGRIVNHL 332
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPT----IELEGTKIDVRCQIHQL-AFSPHT 165
K N + GY GT G ++ + T + LEG +I+++ ++H+L +S H
Sbjct: 333 KKGLEDRRNDLLFVGYQAQGTPGRDIVRYSKTRGGYVRLEGKRINIKARVHELTGYSAHA 392
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQS 201
D K +++ V + P+ + LVHG+ L +R+ S
Sbjct: 393 DQKDLVNWVNAMEKRPKGIRLVHGDPEAKQALFKRLFS 430
>gi|73667742|ref|YP_303757.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
gi|72394904|gb|AAZ69177.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
Length = 637
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKM-- 57
V V GG +IPAFA+GR+QE+ I+L++ + + VP+Y G+ +A +
Sbjct: 401 VKNTVERGGICIIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLD-GMIWEATAIHATHP 459
Query: 58 ------LISWTSQKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
L QK + + + FK V H+ + +I P PCV+ +T GM+ GG +E
Sbjct: 460 EYLNNDLRKLIFQKGQNPFLSECFKPVDSHDMRQKIIQNPHPCVIISTSGMMNGGPVMEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGT-------KIDVRCQIHQLAFS 162
FK +A N + GY GTIG ++ G I + G K+++ Q+ FS
Sbjct: 520 FKAFADEPRNSLVFVGYQADGTIGRRIQKGWKEIPMTGKGGSTEILKLNMEVQVVD-GFS 578
Query: 163 PHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + +MD +K + P+ V HG++ L I +L I+ N E++
Sbjct: 579 GHSDRRQLMDYIKRMQPRPERVFTEHGDEKACVDLASSIYKKLKIETRALTNLETV 634
>gi|297617557|ref|YP_003702716.1| RNA-metabolising metallo-beta-lactamase [Syntrophothermus
lipocalidus DSM 12680]
gi|297145394|gb|ADI02151.1| RNA-metabolising metallo-beta-lactamase [Syntrophothermus
lipocalidus DSM 12680]
Length = 532
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR--VPIYFSAGLTIQAN-MYYKM 57
+ +A GG ++IP+FA+ R Q+L L +++ L +PIY + L I A ++ KM
Sbjct: 233 IQYTMAKGGNLIIPSFAVERTQDLLFDLSVLYQKGELSPDIPIYIDSPLAIAATEIFRKM 292
Query: 58 LISWTSQKVKETYNAFDFKNVHN--FDRS------LIDAPGPCVLFATPGMLTGGFSLEV 109
+ SW + Y D ++ N F R+ L + G V+ + GM G
Sbjct: 293 VASWDDETRLMLYQGKDPLDLPNLKFSRTAQESARLNETSGGTVIISASGMCDAGRIKHH 352
Query: 110 FKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTD 166
KH W P L GY GT+G +++ G + + G +I V+ I + +S H D
Sbjct: 353 LKHNLWRPEATVLFV--GYQAEGTLGRRILDGEKLVRIHGEEIVVKADIRVIEGYSAHAD 410
Query: 167 GKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPA-NNESMCIPSTHY 223
G++ +K P V LVHGE+ + +L E ++ ELG++ P +E +P
Sbjct: 411 RIGLLSWLKHFKNMPSGVFLVHGEEDALLSLAEAVRKELGLRAAIPNWLDEVELVPRVES 470
Query: 224 ----VKAGASD 230
V+AG +D
Sbjct: 471 KAMGVEAGLAD 481
>gi|421478154|ref|ZP_15925922.1| beta-Casp domain protein [Burkholderia multivorans CF2]
gi|400225173|gb|EJO55355.1| beta-Casp domain protein [Burkholderia multivorans CF2]
Length = 467
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V++P F +GRAQE+ Y R+ RVP++ + + Y+
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEIL----HYIARLKASGRMARVPVFVDSPMATDVTEIYRQ 284
Query: 58 LISWTSQKVKET----YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I + E + A ++V +++ + GP V+ A GM TGG L +
Sbjct: 285 HILEHRLTLSEANALGHAATMIRSVEQ-SKAIAEHHGPMVIIAGSGMATGGRVLHHLSRY 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY AGT G L + PT+++ G + VR Q+ + A S H D + I+
Sbjct: 344 APDARNTIALVGYQAAGTRGAALAAHEPTVKIHGEYVRVRAQVESIAALSAHADYEEILQ 403
Query: 173 LVKFLSPQHV--ILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ + P V + HGE L+ RI L C P +++
Sbjct: 404 WLGTMQPAPVRTFITHGEPASADALRRRISERLHWPCEVPTYAQTV 449
>gi|388565940|ref|ZP_10152419.1| hypothetical protein Q5W_0741 [Hydrogenophaga sp. PBC]
gi|388266834|gb|EIK92345.1| hypothetical protein Q5W_0741 [Hydrogenophaga sp. PBC]
Length = 453
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 8/212 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELC--ILLDDYWERMNLRVPIYFSAGLTIQANMYYKML 58
++K A GG V+IPAFA+GRAQ L I R++ +P+Y + + I A Y
Sbjct: 227 INKTAARGGVVVIPAFAVGRAQSLMYGIYQLKKQGRIHQHLPVYLDSPMAIDATRLYHAH 286
Query: 59 IS---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ ++ + +A N ++L GP V+ + GM TGG + K +AP
Sbjct: 287 RDEHRLSPEECEGMCHAAKIVNKVEESKALSAGRGPMVIISASGMATGGRVVHHLKSFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
N I GY GT G ++ G T+ + G + +R ++ L S H D I+ +
Sbjct: 347 DHRNTILFAGYQAGGTRGAAIVHGASTVRIHGQDVPIRAEVASLDNLSAHADADEILAWM 406
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELG 204
+ +P+ + HGE L+ RI ELG
Sbjct: 407 RGFTQTPRRTFVTHGEPEAADALRARIDHELG 438
>gi|159905675|ref|YP_001549337.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159887168|gb|ABX02105.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 422
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GR+QE+ +++++Y + L+ VPIY + LT MY
Sbjct: 202 ISETIENGGKVIIPVFAVGRSQEIIVVINNYMKSGALKEVPIYINGSLTHTTGMYMGYS- 260
Query: 60 SWTSQKVKETYNAFD-----FKN-VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
W + K+K NA + F N + D + + PC++ +T GM+ GG L+ +
Sbjct: 261 DWLNPKIK---NAIENRINPFGNLIKGGDEAF--SKEPCIIISTSGMVQGGPVLQ-YLSL 314
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N I L GY GTIG L G ++ I V ++ ++ FS H D ++
Sbjct: 315 LKNPRNKIILTGYQAEGTIGRSLEEGATEVKPFKRAIPVNGKVVKIEFSAHADYNSLLRF 374
Query: 174 VKFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
+K + P I++HGE+ + +L I L I P+
Sbjct: 375 MKKIPQPSKAIVMHGERYQALSLAMTIWKTLKIPALAPS 413
>gi|313107581|ref|ZP_07793766.1| hypothetical protein PA39016_001030030 [Pseudomonas aeruginosa
39016]
gi|407937916|ref|YP_006853557.1| beta-lactamase domain-containing protein [Acidovorax sp. KKS102]
gi|421485088|ref|ZP_15932652.1| beta-lactamase domain-containing protein [Achromobacter piechaudii
HLE]
gi|310880268|gb|EFQ38862.1| hypothetical protein PA39016_001030030 [Pseudomonas aeruginosa
39016]
gi|400196724|gb|EJO29696.1| beta-lactamase domain-containing protein [Achromobacter piechaudii
HLE]
gi|407895710|gb|AFU44919.1| beta-lactamase domain-containing protein [Acidovorax sp. KKS102]
Length = 453
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 8/212 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELC--ILLDDYWERMNLRVPIYFSAGLTIQANMYYKML 58
++K A GG V+IPAFA+GRAQ L I R++ +P+Y + + I A Y
Sbjct: 227 INKTAARGGVVVIPAFAVGRAQSLMYGIYQLKKQGRIHQHLPVYLDSPMAIDATRLYHAH 286
Query: 59 IS---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ ++ + +A N ++L GP V+ + GM TGG + K +AP
Sbjct: 287 RDEHRLSPEECEGMCHAAKIVNKVEESKALSAGRGPMVIISASGMATGGRVVHHLKSFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
N I GY GT G ++ G T+ + G + +R ++ L S H D I+ +
Sbjct: 347 DHRNTILFAGYQAGGTRGAAIVHGASTVRIHGQDVPIRAEVASLDNLSAHADADEILAWM 406
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELG 204
+ +P+ + HGE L+ RI ELG
Sbjct: 407 RGFTQTPRRTFVTHGEPEAADALRARIDHELG 438
>gi|150402550|ref|YP_001329844.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150033580|gb|ABR65693.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 422
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GR+QE+ +++++Y + L+ VPIY + LT MY
Sbjct: 202 ISETIENGGKVIIPVFAVGRSQEIIVVINNYMKSGALKEVPIYINGSLTHTTGMYMGYS- 260
Query: 60 SWTSQKVKETYNAFD-----FKN-VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
W + K+K NA + F N + D + + PC++ +T GM+ GG L+ +
Sbjct: 261 DWLNPKIK---NAIENRINPFGNLIKGGDEAF--SKEPCIIISTSGMVQGGPVLQ-YLSL 314
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDL 173
+ N I L GY GTIG L G ++ I V ++ ++ FS H D ++
Sbjct: 315 LKNPRNKIILTGYQAEGTIGRSLEEGATEVKPFKRAIPVNGKVVKIEFSAHADYNSLLRF 374
Query: 174 VKFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
+K + P I++HGE+ + +L I L I P+
Sbjct: 375 MKKIPQPSKAIVMHGERYQALSLAMTIWKTLKIPALAPS 413
>gi|432328821|ref|YP_007246965.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
gi|432135530|gb|AGB04799.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
Length = 647
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 19/232 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V + GGK+LIP FA+GR+QE+ ++L+ + L +PIY G+ +A +
Sbjct: 412 VSRTFERGGKILIPVFAVGRSQEVMLVLESFMRNGELPEIPIYLD-GMIWEATTIHAAYP 470
Query: 60 SWTSQKVKETY-----NAF---DFKNVHNFDR--SLIDAPGPCVLFATPGMLTGGFSLEV 109
+ ++ ++E N F F V + +R +I + P ++ +T GM+ GG LE
Sbjct: 471 EYLNKDLRELIFQKKENPFLSPIFHRVESSERREEVISSSDPAIVLSTSGMMNGGPVLEY 530
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI--ELEGTKIDVRCQIHQL---AFSPH 164
FKHWA N + GY GT+G ++ +G + L G I ++ +++ FS H
Sbjct: 531 FKHWADDPRNTLIFVGYQAVGTLGRRIQNGLSEVLMSLGGKPITIKVEMNIETIDGFSGH 590
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+D + ++ + ++ P+ +I HGE+ K L + G++ N E
Sbjct: 591 SDRRQLVQFIGSMNPKPERIITCHGEESKCIDLAIGLHKRYGMETMALKNLE 642
>gi|148360321|ref|YP_001251528.1| metallo-beta lactamase family transporter protein [Legionella
pneumophila str. Corby]
gi|296106617|ref|YP_003618317.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
gi|148282094|gb|ABQ56182.1| metallo-beta lactamase family [Legionella pneumophila str. Corby]
gi|295648518|gb|ADG24365.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
Length = 453
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 8/219 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMY---Y 55
+++ V GG V+IPAFA+GRAQ L + + + + +P++ + + I A Y
Sbjct: 227 INQTVKRGGSVIIPAFAVGRAQSLLYFIYELKRQGKIPKDIPVFLDSPMAIDATHLLCTY 286
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K T+++ + + + N + + P ++ A GM GG L K +AP
Sbjct: 287 KEDHHLTAEQCRGLCHVATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKAFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
+ N + G+ GT G ++++G +++ G+ I ++ Q+ + + S H D +++ +
Sbjct: 347 NPRNTLLFTGFQAGGTRGARIVNGERQVKIHGSLIPIQAQVVVMSSTSAHADYLELLEWL 406
Query: 175 KFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
+ + PQ V + HGE TLKERI+ +LG C P+
Sbjct: 407 QHFARPPQKVFITHGEPHSAQTLKERIEKQLGFSCTIPS 445
>gi|41614872|ref|NP_963370.1| hypothetical protein NEQ076 [Nanoarchaeum equitans Kin4-M]
gi|40068596|gb|AAR38931.1| NEQ076 [Nanoarchaeum equitans Kin4-M]
Length = 635
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 8/226 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSA---GLTIQANMYYK 56
V + + GK+LIP +GRAQE+ LL L VPIY +T Y +
Sbjct: 408 VKEVIKRKGKLLIPVLGVGRAQEILYLLVKSIRANKLDEVPIYLDGVVWEITAIHTAYPE 467
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRS---LIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
L K+ N F K VH R+ ++ + P ++ AT GML GG S++ K
Sbjct: 468 YLKEEIRNKILAGKNPFIDKFVHRAPRNREEIVYSTEPSIILATSGMLVGGPSVQYLKLM 527
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
A N I Y T+G ++ SG +E++G I + ++ FS H D I
Sbjct: 528 AEDPKNAIAFVSYQGPNTLGRQIQSGVREVEIDGQLIKINLEVRSFEGFSGHADKGEIES 587
Query: 173 LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ + P V++ HGE+ K+ L ++ +L ++ P N +++ +
Sbjct: 588 FLRRVRPGRVVINHGERSKVLHLASYLRKKLNVETNAPRNMDALAL 633
>gi|392969461|ref|ZP_10334876.1| beta-lactamase domain protein [Fibrisoma limi BUZ 3]
gi|387841655|emb|CCH56934.1| beta-lactamase domain protein [Fibrisoma limi BUZ 3]
Length = 464
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANM--------Y 54
CV GGK++IPAFA+ R QEL LD L R+P+Y + + ++A +
Sbjct: 236 CVRRGGKLIIPAFAVDRTQELIYALDQLESEGKLPRLPVYIDSPMAVKATQVMDDHDECF 295
Query: 55 YKMLISWTSQKVKETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
++S+ +K+ +AFDF N+H +++ D PG C++ ++ GM G
Sbjct: 296 NPQILSY----IKKDGSAFDFPNLHYISDVADSKAINDRPGACIIISSSGMAEAGRIKHH 351
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
K+ N I L GY T+G L G+ + + G V Q+ + +FS H D +
Sbjct: 352 IKNNIEDSRNTILLVGYASPVTLGGALKRGDREVRIFGETFTVNAQVAIMDSFSAHADYR 411
Query: 169 GIMDLVKFLSPQH---VILVHGEKPKMATLKERIQS 201
+++ + P V LVHGE K K+++++
Sbjct: 412 EMLEFLACQDPAQVKTVYLVHGEYDKQLIWKQKLEA 447
>gi|420142925|ref|ZP_14650458.1| hypothetical protein PACIG1_5976 [Pseudomonas aeruginosa CIG1]
gi|421159924|ref|ZP_15619028.1| hypothetical protein PABE173_2625 [Pseudomonas aeruginosa ATCC
25324]
gi|403244301|gb|EJY58224.1| hypothetical protein PACIG1_5976 [Pseudomonas aeruginosa CIG1]
gi|404545733|gb|EKA54803.1| hypothetical protein PABE173_2625 [Pseudomonas aeruginosa ATCC
25324]
Length = 453
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 8/212 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELC--ILLDDYWERMNLRVPIYFSAGLTIQANMYYKML 58
++K A GG V+IPAFA+GRAQ L I R++ +P+Y + + I A Y
Sbjct: 227 INKTAARGGVVVIPAFAVGRAQSLMYGIYQLKKQGRIHQHLPVYLDSPMAIDATRLYHAH 286
Query: 59 IS---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+ ++ + +A N ++L GP V+ + GM TGG + K +AP
Sbjct: 287 RDEHRLSPEECEGMCHAAKIVNKVEESKALSAGRGPMVIISASGMATGGRVVHHLKSFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
N I GY GT G ++ G T+ + G + +R ++ L S H D I+ +
Sbjct: 347 DHRNTILFAGYQAGGTRGAAIVHGASTVRIHGQDVPIRAEVASLDNLSAHADADEILAWM 406
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELG 204
+ +P+ + HGE L+ RI ELG
Sbjct: 407 RGFTQTPRRTFVTHGEPEAADALRARIDHELG 438
>gi|327401049|ref|YP_004341888.1| KH-domain/beta-lactamase-domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316557|gb|AEA47173.1| KH-domain/beta-lactamase-domain protein [Archaeoglobus veneficus
SNP6]
Length = 634
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 17/233 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+++ + GGKVLIP FA+GR+QE+ I L++ L + G+ +A +
Sbjct: 399 INETLKNGGKVLIPTFAVGRSQEVMIALEEAIRNKKLEEVTVYLDGMIHEATAIHTAYPE 458
Query: 61 WTSQKVKETY-----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + +++ N F ++ D + +I+ P ++ AT GML GG +E F
Sbjct: 459 YLNASLRDLIFHHGINPFISESFVKVDSASKRQEVIEEESPSIILATSGMLNGGPVMEYF 518
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK----IDVRCQIHQL-AFSPHT 165
K A E N + GY GT+G ++ G + ++V +I + FS H+
Sbjct: 519 KRLAGDEKNTLIFVGYQAEGTLGRRIQKGWREVPFPSNGKREVVNVNMRIETVDGFSGHS 578
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D K +M V+ LS P+ VI VHG++ K L I ++ P N E++
Sbjct: 579 DRKQLMSYVRALSSKPEKVITVHGDENKCVDLASSIYKTYRVETRAPYNLETV 631
>gi|357974067|ref|ZP_09138038.1| beta-lactamase-like protein [Sphingomonas sp. KC8]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 13/220 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V + V GG V+IPAFA+GRAQ L L E L+ VPIY + + I A+ +
Sbjct: 228 VERTVRRGGTVIIPAFAVGRAQALLYYLWKLREAGRLKNVPIYLDSPMAISASDLLCEHL 287
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
T Q ++ + + +++ +P P ++ + GM TGG L K AP
Sbjct: 288 GDHRLTPQVCRDACDIATYTREVEQSKAITASPYPKIVISASGMATGGRVLHHLKASAPD 347
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
+ N I G+ AGT G ++ G I++ G + + ++ L S H D +L++
Sbjct: 348 QKNTILFSGFQAAGTRGRAMLEGAREIKIHGQWVPIEAEVADLPMLSAHADAN---ELMR 404
Query: 176 FLS-----PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
+LS P+ V +VHGE L+ RI ELG P
Sbjct: 405 WLSGFQRPPKRVFIVHGEAQASEALRSRIDQELGWDAVVP 444
>gi|305663939|ref|YP_003860227.1| beta-lactamase [Ignisphaera aggregans DSM 17230]
gi|304378508|gb|ADM28347.1| beta-lactamase domain protein [Ignisphaera aggregans DSM 17230]
Length = 424
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 26/228 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSA------GLTIQANMY 54
V + GG VL+PAF+LGRAQE+ LL + N +Y+ + ++ Y
Sbjct: 212 VKSVIEDGGNVLVPAFSLGRAQEILTLLIERLPNAN----VYYDGMAKEILNILLEHREY 267
Query: 55 ---YKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
Y +L+ KV E + A D + R I G ++ A GML GG +L +
Sbjct: 268 INRYDLLL-----KVYERFIAVDKTTL----RKKICKEGGNIIVAPAGMLKGGPALYYIR 318
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIM 171
+ N I L Y T G KL++ N IE G++I R +++ FS H G+
Sbjct: 319 RLGDNPRNAIILVSYQAPSTPGRKLLT-NGVIEEGGSRI--RAKLYWFDFSSHAGSTGLF 375
Query: 172 DLVKFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++VK + + + V+LVHG + TL RI+ ELGI+ PAN +++ I
Sbjct: 376 NVVKSIKNVEKVLLVHGNDDSIYTLGYRIKDELGIEFEAPANGQTILI 423
>gi|76800760|ref|YP_325768.1| mRNA 3'-end processing factor [Natronomonas pharaonis DSM 2160]
gi|76556625|emb|CAI48196.1| beta-lactamase domain protein [Natronomonas pharaonis DSM 2160]
Length = 639
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + GGKVLIPAFA+GR+QE+ ++L++ + VP++ G+ +A +
Sbjct: 403 IRETTTEGGKVLIPAFAVGRSQEIMLVLEEAMREGEIPTVPVHLD-GMIWEATAIHTTYP 461
Query: 60 SWTSQKVKETY-----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ +++ N F ++ D R + GPC++ +T GM+ GG +
Sbjct: 462 EYLRDDLRDRIFHDDENPFLADQFNHIDGGEEERQEVADGGPCIVLSTSGMVEGGPIMSW 521
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL------EGT-KIDVRCQIHQLAFS 162
H E + +T GY GT+G+++ SG I + GT K+++ + FS
Sbjct: 522 LNHIGSEEKSTMTFVGYQAQGTLGSRIQSGWDEIPMNDRGNGRGTLKLNMNVETVD-GFS 580
Query: 163 PHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H D +G+M+ V+ ++ P+ V+ VHG++ + L + E ++ + P N E+
Sbjct: 581 GHADRQGLMNFVRTMNPRPEKVLCVHGDESSVQDLSSALYHEFNMRTFAPKNLETF 636
>gi|451818434|ref|YP_007454635.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784413|gb|AGF55381.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 851
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 16/234 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYK---- 56
V +C+ GK+LIPAFALGRAQE+ ++L + ++ + G+ N Y
Sbjct: 219 VKECIENNGKMLIPAFALGRAQEVILILKSAMNKGLIKNVKVYVDGMVRDINRVYNKNPL 278
Query: 57 MLISWTSQKVKETYNAFDFKNVHNF-----DRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
L + +K+ + F N+ +++ P ++ ++ GMLTGG S +
Sbjct: 279 FLKNSLGKKILRGASPFYDDNIMEIMITDNREEILNQKEPVIIISSSGMLTGGQSAFYAE 338
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLM-------SGNPTIELEGTKIDVRCQIHQLAFSPH 164
AP E I + GY + G K++ + + + G I V+C + ++ S H
Sbjct: 339 KIAPMENGYIIITGYQDEESPGRKILELTEADENSERYLNINGLNIPVKCNVRKVGLSAH 398
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
D I +++ +S +++ILVHG + + +L + I E + + PA E + I
Sbjct: 399 ADKNEIKGVLERISARNIILVHGNEEVIRSLGKEISDEFIGRTFTPACGEEIVI 452
>gi|297267035|ref|XP_001114469.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Macaca mulatta]
Length = 234
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 26 ILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYN---AFDFKNVHN 80
I LD+YW+ +PIY+++ L + Y+ ++ + K+++ N F FK++ N
Sbjct: 7 ISLDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISN 66
Query: 81 FDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSG 139
D GP V+ A+PGM+ G S E+F+ W + N + + GYC+ GT+ +MS
Sbjct: 67 LKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE 126
Query: 140 NPTI-ELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVI 183
I + G K+ ++ + ++FS HTD + + ++ L P HV+
Sbjct: 127 PEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVV 171
>gi|53722936|ref|YP_111921.1| metallo-beta-lactamase [Burkholderia pseudomallei K96243]
gi|167743774|ref|ZP_02416548.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
14]
gi|167820965|ref|ZP_02452645.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
91]
gi|167829317|ref|ZP_02460788.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei 9]
gi|167916071|ref|ZP_02503162.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
112]
gi|418544277|ref|ZP_13109579.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1258a]
gi|418551120|ref|ZP_13116056.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1258b]
gi|52213350|emb|CAH39393.1| putative metallo-beta-lactamase family protein [Burkholderia
pseudomallei K96243]
gi|385349268|gb|EIF55847.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1258b]
gi|385349903|gb|EIF56458.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1258a]
Length = 459
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 289 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVIIAGSGMATGGRVLHHLARYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 409 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 449
>gi|126458658|ref|YP_001054936.1| beta-lactamase domain-containing protein [Pyrobaculum calidifontis
JCM 11548]
gi|126248379|gb|ABO07470.1| beta-lactamase domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 634
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQAN---MYYK 56
V + VA GGKVLIPAF+ GR QE+ +L+ E + RVPIY + N MY
Sbjct: 391 VAETVAKGGKVLIPAFSTGRGQEILYILNKMMEGGLIPRVPIYVDGMIVETLNVYLMYPH 450
Query: 57 MLISWTSQKVKETYNAFDFKN-VHNFDRS------------LIDAPGPCVLFATPGMLTG 103
L ++++ N F V DR+ + + P V+ A GML G
Sbjct: 451 YLNPEVAEEIYSGVNPFTTSGAVVIVDRAKRVEDRINQVAKIAQSEEPAVIIAPHGMLNG 510
Query: 104 GFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-TKIDVRCQIHQLA-- 160
G L+ F AP E N + Y GT+G ++++G + T +++ Q+ A
Sbjct: 511 GPILDYFAQLAPDERNKLIFVSYQAEGTLGRRILNGEREFTVRSLTAGEIKVQMRMEAAS 570
Query: 161 ---FSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
FS H+D + +M V+ + P+ ++L+HGE K+ +L I+ + I P E
Sbjct: 571 IPGFSGHSDRRELMKYVEHIEPKPKKIVLIHGEPSKIISLATSIELKYKITTVVPKVGER 630
Query: 216 M 216
+
Sbjct: 631 I 631
>gi|255658268|ref|ZP_05403677.1| metallo-beta-lactamase family protein [Mitsuokella multacida DSM
20544]
gi|260849581|gb|EEX69588.1| metallo-beta-lactamase family protein [Mitsuokella multacida DSM
20544]
Length = 537
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQAN-MYYKM 57
V++ + GG ++IP+FA+GR Q L R++ +PI + L I A ++ K
Sbjct: 232 VNETMDRGGNLIIPSFAVGRTQTLLYYFFRLHREGRLDPDIPIIIDSPLAINATRVFLKN 291
Query: 58 LISWTSQKVK---ETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ +K + DF V R+L + G ++ + GM G L
Sbjct: 292 FRDFDEDALKVFGKNGKVPDFPQVRLCETAAESRALNSSEGSAIIISASGMADAGRVLHH 351
Query: 110 FKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTD 166
KH W P + I GY G +G +L+ G + + G +I V+ QI L FS H D
Sbjct: 352 LKHNLWRPE--STILFVGYQAEGCLGRRLIDGITRVRVLGEEIAVKAQIKSLDGFSAHAD 409
Query: 167 GKGIMDLVKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
IM + ++ P + +VHGE LK RIQ ELGI+CY P
Sbjct: 410 ANQIMSWLGEITSPKPAKIFIVHGEATAQGALKSRIQKELGIECYVP 456
>gi|110598396|ref|ZP_01386669.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Chlorobium ferrooxidans DSM 13031]
gi|110340005|gb|EAT58507.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Chlorobium ferrooxidans DSM 13031]
Length = 463
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 12/226 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ K AGGG +LIPAFA+GR+QEL +++E L R I+ + + I+A+ Y
Sbjct: 233 IRKAAAGGGNILIPAFAIGRSQELLYFFSEHYEEWELDRWQIFLDSPMAIEASRIYWDYP 292
Query: 60 SWTSQKVKETYNAFDF----KNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ + N + KN+H +++ ++ A GM GG L
Sbjct: 293 ALVDEDAASFRNGRSWMPHLKNLHFTAKPEQSKAINAIKQGAIIIAGSGMCNGGRILHHL 352
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKG 169
KH + + G+ AGT+G +L+ G +E+ G VR +H + S H D
Sbjct: 353 KHNIERPECSVIITGFQAAGTLGRRLVEGEQEVEIHGRSYPVRAALHTIGGLSAHGDRND 412
Query: 170 IMD-LVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
I+ L F + + +VHG++P + I++EL +K P E
Sbjct: 413 ILRWLGGFTNRPEIYVVHGDEPVKTVFLDAIEAELHLKASIPQQGE 458
>gi|254168266|ref|ZP_04875112.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|254168398|ref|ZP_04875243.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289595800|ref|YP_003482496.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
gi|197622679|gb|EDY35249.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|197622775|gb|EDY35344.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289533587|gb|ADD07934.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
Length = 647
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V + GGK+LIP FA+GR+QE+ ++L+ + L +PIY G+ +A +
Sbjct: 412 VMRTYDKGGKILIPVFAVGRSQEVMLVLESFMRNGELPEMPIYLD-GMIWEATTIHAAYP 470
Query: 60 SWTSQKVKETY-----NAF---DFKNVHNFDR--SLIDAPGPCVLFATPGMLTGGFSLEV 109
+ ++ ++E N F F V + +R +I + P ++ +T GM+ GG LE
Sbjct: 471 EYLNKDLRELIFQKKENPFLSPIFHRVESVERREEVISSSDPLIVLSTSGMMNGGPVLEY 530
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSG--NPTIELEGTKIDVRCQIHQL---AFSPH 164
FKHWA N + GY GT+G ++ +G + L G V+ +++ FS H
Sbjct: 531 FKHWADDPRNTLVFVGYQAVGTLGRRIQNGLKEVLMSLGGKPFTVKVEMNIETIDGFSGH 590
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKC 207
+D + ++ + ++ P+ VI+ HGE+ K L + G++
Sbjct: 591 SDRRQLVQYISSMNPKPERVIICHGEENKCIDLAIGLHKRYGMET 635
>gi|386002906|ref|YP_005921205.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
gi|357210962|gb|AET65582.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
Length = 635
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V + GGKV+IPAFA+GR+QE+ I L++ + +L + G+ +A +
Sbjct: 401 VRDTIKRGGKVIIPAFAVGRSQEVMIALEEAIRKKSLEEISVYLDGMIYEATAIHTTYPE 460
Query: 61 WTSQKVKETY-----NAFD---FKNVH-NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ + ++++ N F F V + RS I PCV+ AT GM+ GG LE K
Sbjct: 461 YLNNELRDLIFHKGINPFLSECFVQVETSSQRSKIVDGDPCVVLATSGMMNGGPILEYLK 520
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQL---AFSPHTD 166
P E N + + GY GT+G ++ G I L EG V+ + + FS H+D
Sbjct: 521 ALGPDERNTLVIVGYQAEGTLGRRIQKGWNEIPLSAEGKTQTVKINLEVVTVDGFSGHSD 580
Query: 167 GKGIMDLVK--FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+MD V+ + P VI HG++ L I + I P N E++
Sbjct: 581 RNQLMDYVRRVYPKPSRVITNHGDESNCLDLASSIYKKHRIPTMAPMNLETV 632
>gi|167850795|ref|ZP_02476303.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
B7210]
gi|403523840|ref|YP_006659409.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
BPC006]
gi|403078907|gb|AFR20486.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
BPC006]
Length = 459
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 289 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVVIAGSGMATGGRVLHHLARYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 409 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 449
>gi|255311938|pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311939|pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311940|pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311941|pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+ +
Sbjct: 210 KTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L APGP V+ A GML GG L KH
Sbjct: 269 SEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L F H ++D
Sbjct: 329 LSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFQGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|126455589|ref|YP_001076629.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1106a]
gi|134278122|ref|ZP_01764836.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
305]
gi|226195817|ref|ZP_03791404.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
Pakistan 9]
gi|242313182|ref|ZP_04812199.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1106b]
gi|254263361|ref|ZP_04954226.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1710a]
gi|126229357|gb|ABN92770.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1106a]
gi|134249906|gb|EBA49986.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
305]
gi|225932302|gb|EEH28302.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
Pakistan 9]
gi|242136421|gb|EES22824.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1106b]
gi|254214363|gb|EET03748.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1710a]
Length = 472
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 242 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 301
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 302 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVIIAGSGMATGGRVLHHLARYAPDSR 361
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 362 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 421
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 422 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 462
>gi|319763809|ref|YP_004127746.1| RNA-metabolising metallo-beta-lactamase [Alicycliphilus
denitrificans BC]
gi|330823927|ref|YP_004387230.1| beta-Casp domain-containing protein [Alicycliphilus denitrificans
K601]
gi|317118370|gb|ADV00859.1| RNA-metabolising metallo-beta-lactamase [Alicycliphilus
denitrificans BC]
gi|329309299|gb|AEB83714.1| Beta-Casp domain protein [Alicycliphilus denitrificans K601]
Length = 454
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKMLIS 60
+ A GG ++P FA+GRAQ + + R +L R+P+Y + + + ++ +
Sbjct: 231 RLAARGGVAVVPVFAVGRAQTVLHAIARLKARGDLPARLPVYLDSPMAVSTTELFEDHVG 290
Query: 61 WTSQKVKETYN-AFDFKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+ + A VH+ + S L GP ++ + GM TGG L A
Sbjct: 291 EHCLSHADLHAMARGTTLVHSVEESKALARLHGPRIILSASGMATGGRVLHHLALHAGDH 350
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKF 176
N+I L G+ GT G ++ +G +I + G +++R ++ QLA S H DG ++D ++
Sbjct: 351 RNMIVLTGHQAGGTRGARIANGEKSIRILGRDVEIRAEVVQLATASAHADGNQVLDWLRA 410
Query: 177 L--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ +P+ V +VHGE P L++RI+ EL P + +++ +
Sbjct: 411 MPAAPRRVYVVHGELPAADMLRQRIEYELHWPAEVPEHGDTVVL 454
>gi|171320781|ref|ZP_02909789.1| beta-lactamase domain protein [Burkholderia ambifaria MEX-5]
gi|171093973|gb|EDT39086.1| beta-lactamase domain protein [Burkholderia ambifaria MEX-5]
Length = 467
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 105/240 (43%), Gaps = 17/240 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V++P F +GRAQE+ Y R+ RV ++ + + A Y+
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEIL----HYIARLKASGRMARVAVFLDSPMATDATEIYRH 284
Query: 58 LISWTSQKVKETYN-AFDFKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I V E V + D+S + + GP V+ A GM TGG L +A
Sbjct: 285 HILEHRLTVSEANTLGHAATMVRSIDQSKAIAEHHGPMVIIAGSGMATGGRVLHHLSRYA 344
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P N I L GY AGT G L + PT+++ G + VR Q+ + A S H D + I+
Sbjct: 345 PDVRNTIALVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVESITALSAHADYEEILTW 404
Query: 174 VKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDA 231
+ + +P + HGE L+ RI L C PA + C+ GA ++
Sbjct: 405 LGTMQCAPVRTFITHGEPAAADALRRRIAERLHWPCEVPAYEQ--CVDLDEVTTGGAHES 462
>gi|45358944|ref|NP_988501.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|340624691|ref|YP_004743144.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|45047810|emb|CAF30937.1| Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop)
[Methanococcus maripaludis S2]
gi|339904959|gb|AEK20401.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 422
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 13/218 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GR+QE+ +++++Y + L+ VPIY + LT MY
Sbjct: 202 ISETIDNGGKVIIPVFAVGRSQEIIVVINNYMKSGALKEVPIYINGSLTHTTGMYMGYS- 260
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSL-----IDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
W + K+K NA + + ++ F + + + PC++ +T GM+ GG L+ +
Sbjct: 261 DWLNPKIK---NAIENR-INPFGNLIKGGDEVFSREPCIIISTSGMVQGGPVLQ-YLSLL 315
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
+ N I L GY GTIG L G ++ I V ++ ++ FS H D ++ +
Sbjct: 316 KNPRNKIILTGYQAEGTIGRSLEEGATEVKPFKRAIPVNGKVVKIEFSAHADYNSLLRFM 375
Query: 175 KFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
K + P I++HGE+ + +L I L I P+
Sbjct: 376 KKIPQPDKAIVMHGERYQALSLAMTIWKTLKIPALAPS 413
>gi|53716541|ref|YP_105000.1| metallo-beta-lactamase family protein [Burkholderia mallei ATCC
23344]
gi|167724835|ref|ZP_02408071.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
DM98]
gi|167899398|ref|ZP_02486799.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
7894]
gi|167907728|ref|ZP_02494933.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
NCTC 13177]
gi|167923912|ref|ZP_02511003.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
BCC215]
gi|386865731|ref|YP_006278679.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1026b]
gi|418397200|ref|ZP_12970932.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
354a]
gi|418536959|ref|ZP_13102623.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1026a]
gi|418556782|ref|ZP_13121399.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
354e]
gi|52422511|gb|AAU46081.1| metallo-beta-lactamase family protein [Burkholderia mallei ATCC
23344]
gi|385351212|gb|EIF57698.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1026a]
gi|385366411|gb|EIF72032.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
354e]
gi|385369227|gb|EIF74578.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
354a]
gi|385662859|gb|AFI70281.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1026b]
Length = 459
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 289 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVVIAGSGMATGGRVLHHLARYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 409 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 449
>gi|134045242|ref|YP_001096728.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132662867|gb|ABO34513.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 422
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 13/218 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GR+QE+ +++++Y + L+ VPIY + LT MY
Sbjct: 202 ISETIDNGGKVIIPVFAVGRSQEIIVVINNYMKSGALKEVPIYINGSLTHTTGMYMGYS- 260
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSL-----IDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
W + K+K NA + + ++ F + + + PC++ +T GM+ GG L+ +
Sbjct: 261 DWLNPKIK---NAIENR-INPFGNLIKGGDEVFSREPCIIISTSGMVQGGPVLQ-YLSLL 315
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
+ N I L GY GTIG L G ++ I V ++ ++ FS H D ++ +
Sbjct: 316 KNPRNKIILTGYQAEGTIGRSLEEGATEVKPFKRAIPVNGKVVKIEFSAHADYNSLLRFM 375
Query: 175 KFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
K + P I++HGE+ + +L I L I P+
Sbjct: 376 KKIPQPSKAIVMHGERYQALSLAMTIWKTLKIPALAPS 413
>gi|238927116|ref|ZP_04658876.1| RNA-metabolising metallo-beta-lactamase [Selenomonas flueggei ATCC
43531]
gi|238885096|gb|EEQ48734.1| RNA-metabolising metallo-beta-lactamase [Selenomonas flueggei ATCC
43531]
Length = 536
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYY---------K 56
GG V+IP+FA+GR Q L + W+ R++ +PI + L IQA + +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYNLWKEGRLDDDIPIIIDSPLAIQATRVFLKNYEDFDEE 297
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKH--WA 114
+ + ++ + + R+L A G ++ + GM G L KH W
Sbjct: 298 TIAFFGAEGMTPAFPQVRIAETAAESRALNSAEGSAIILSASGMADAGRVLHHLKHNLWR 357
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P L GY G++G +L+ G + + G +I V+ +I L FS H D + ++
Sbjct: 358 PESTVLFV--GYQAEGSLGRRLVDGIKRVRILGEEIAVKAKIQVLDGFSAHADAEQTVEW 415
Query: 174 VKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++ ++ P V LVHGE LKERIQ ELG++ Y P
Sbjct: 416 MRSITSPRPAKVFLVHGEGQAQEALKERIQEELGLEVYVP 455
>gi|254185960|ref|ZP_04892478.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254194047|ref|ZP_04900479.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
S13]
gi|254301019|ref|ZP_04968463.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
406e]
gi|157811085|gb|EDO88255.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
406e]
gi|157933646|gb|EDO89316.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|169650798|gb|EDS83491.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
S13]
Length = 525
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 295 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 354
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 355 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVIIAGSGMATGGRVLHHLARYAPDSR 414
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 415 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 474
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 475 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 515
>gi|448302487|ref|ZP_21492466.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
gi|445581153|gb|ELY35515.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
Length = 637
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 18/234 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGL---TIQANMYYK 56
+ + GKV+IPAFA+GR+QEL ++L++ L +PIY + T Y +
Sbjct: 401 ITRTYENDGKVVIPAFAVGRSQELMLVLEEAMRTEKLPTMPIYLDGMIREATAIHTAYPE 460
Query: 57 MLISWTSQKV-KETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
L Q++ E N F D R I PC++ +T GM+TGG +
Sbjct: 461 FLRDGLRQRILHEDENPFLADQFEQVDGGEEMREAIAGGEPCIILSTSGMVTGGPIMSWL 520
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-----EGTKIDVRCQIHQLA-FSPH 164
+ N + GY GT+G ++ GN I+L E ++ +R I ++ FS H
Sbjct: 521 ELLGGDPENALIFVGYQAEGTLGRRIQGGNREIQLTDRRGETNRLTLRFTIESVSGFSGH 580
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
D G+ + V+ ++ PQ ++ VHG+K L + + + Y P N E+
Sbjct: 581 ADRNGLENFVQSMNPRPQEILCVHGDKSATDQLSSALYQKFNCRTYAPRNLETF 634
>gi|76819393|ref|YP_336171.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1710b]
gi|76583866|gb|ABA53340.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1710b]
Length = 603
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 373 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 432
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 433 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVIIAGSGMATGGRVLHHLARYAPDSR 492
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 493 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 552
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 553 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 593
>gi|161522914|ref|YP_001585843.1| beta-lactamase domain-containing protein [Burkholderia multivorans
ATCC 17616]
gi|189348255|ref|YP_001941451.1| metallo-beta-lactamase family protein [Burkholderia multivorans
ATCC 17616]
gi|416969146|ref|ZP_11937007.1| metallo-beta-lactamase family protein [Burkholderia sp. TJI49]
gi|160346467|gb|ABX19551.1| beta-lactamase domain protein [Burkholderia multivorans ATCC 17616]
gi|189338393|dbj|BAG47461.1| metallo-beta-lactamase family protein [Burkholderia multivorans
ATCC 17616]
gi|325521096|gb|EGD00014.1| metallo-beta-lactamase family protein [Burkholderia sp. TJI49]
Length = 467
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V++P F +GRAQE+ Y R+ RVP++ + + Y+
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEIL----HYIARLKASGRMARVPVFVDSPMATDVTEIYRH 284
Query: 58 LISWTSQKVKETYNAFDFKN--VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I V E NA + + D+S + + GP V+ A GM TGG L +
Sbjct: 285 HILEHRLTVSEA-NALGHAATMIRSVDQSKAIAEHHGPMVIIAGSGMATGGRVLHHLARY 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY AGT G L + PT+++ G + VR Q+ + S H D + I+
Sbjct: 344 APDARNTIALVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVESITTLSAHADYEEILK 403
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
+ + +P + HGE ++ RI+ L +C P
Sbjct: 404 WLGTMPCAPVRTFVTHGEPAAADAMRRRIEERLHWRCEVP 443
>gi|328950114|ref|YP_004367449.1| beta-lactamase domain-containing protein [Marinithermus
hydrothermalis DSM 14884]
gi|328450438|gb|AEB11339.1| beta-lactamase domain protein [Marinithermus hydrothermalis DSM
14884]
Length = 447
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISW 61
K +A GGKVLIP+FA+ RAQEL + + + + VP++ + LT + Y L+
Sbjct: 224 KTLAAGGKVLIPSFAMERAQELLFHIRELEQEGRIPEVPVFVDSPLTTRITEVYTALVDT 283
Query: 62 TSQKVKETY----NAFDFKNVHNF-----DRSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
S +V+ Y + F + + + ++L D G V+ A GML+GG L +H
Sbjct: 284 FSPEVQALYRQGVDPFRPRQLEHVRSVEESKALNDLAGSAVIIAGSGMLSGGRILHHLRH 343
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIM 171
P + + + GY G +G +++ + + G ++ VR +H L FS H G
Sbjct: 344 HLPDPKSALVIVGYQPRGGLGARILERPAAVRIYGHEVPVRASVHTLGGFSGHA---GQD 400
Query: 172 DLVKFLSPQ-HVILVHGEKPKMATLKERIQS 201
+L+ +L+ + V+LVHGE K+ L +R+ +
Sbjct: 401 ELLDWLAEEPRVLLVHGELEKLHALGKRLHA 431
>gi|121598051|ref|YP_990936.1| metallo-beta-lactamase [Burkholderia mallei SAVP1]
gi|126445222|ref|YP_001063734.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
668]
gi|126447010|ref|YP_001077401.1| metallo-beta-lactamase family protein [Burkholderia mallei NCTC
10247]
gi|217422620|ref|ZP_03454123.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
576]
gi|237508234|ref|ZP_04520949.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
MSHR346]
gi|238562394|ref|ZP_00440490.2| metallo-beta-lactamase family protein [Burkholderia mallei GB8
horse 4]
gi|254184742|ref|ZP_04891331.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1655]
gi|121225849|gb|ABM49380.1| metallo-beta-lactamase family protein [Burkholderia mallei SAVP1]
gi|126224713|gb|ABN88218.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
668]
gi|126239864|gb|ABO02976.1| metallo-beta-lactamase family protein [Burkholderia mallei NCTC
10247]
gi|184215334|gb|EDU12315.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
1655]
gi|217394851|gb|EEC34870.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
576]
gi|235000439|gb|EEP49863.1| metallo-beta-lactamase family protein [Burkholderia pseudomallei
MSHR346]
gi|238522692|gb|EEP86135.1| metallo-beta-lactamase family protein [Burkholderia mallei GB8
horse 4]
Length = 472
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 242 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 301
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 302 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVVIAGSGMATGGRVLHHLARYAPDSR 361
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 362 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 421
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 422 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 462
>gi|354611945|ref|ZP_09029897.1| KH-domain/beta-lactamase-domain protein [Halobacterium sp. DL1]
gi|353191523|gb|EHB57029.1| KH-domain/beta-lactamase-domain protein [Halobacterium sp. DL1]
Length = 641
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+++ GGKVLIPAFA+GR+QE+ ++L++ + + +PI+ G+ +A +
Sbjct: 403 INETYERGGKVLIPAFAVGRSQEMMLVLEEAMRKGEIPEMPIHLD-GMIWEATAIHTTYP 461
Query: 60 SWTSQKVK-----ETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ ++ E N F ++ D R + C++ +T GM+ GG +
Sbjct: 462 EYLRDDLRDRIFHEDKNPFLAPQFNHIDGGEEERQAVADDDQCIILSTSGMVEGGPIMSW 521
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL--------AF 161
+H P + +T GY GT+G ++ SG I + ++ + R QL F
Sbjct: 522 IQHIGPDPDSTMTFVGYQAQGTLGRRIQSGWDEIPMPDSRDNGRTDRLQLNMEVETVDGF 581
Query: 162 SPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S H D +G+ D V+ ++ P+ V+ VHG++ L + E ++ + P N E+
Sbjct: 582 SGHADRQGLEDFVRTMNPRPEKVLCVHGDESSTQDLSSALYHEFNMRTFAPKNLETF 638
>gi|85707033|ref|ZP_01038122.1| metallo-beta-lactamase family protein [Roseovarius sp. 217]
gi|85668474|gb|EAQ23346.1| metallo-beta-lactamase family protein [Roseovarius sp. 217]
Length = 460
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISW 61
+ A GG VLIP+FA+GRAQ L + + ER ++ VP++ ++ + + A Y +
Sbjct: 235 RTFARGGTVLIPSFAVGRAQGLMLHIARLMERCDIPYVPVFLNSPMAVNATEIYHRHHAE 294
Query: 62 TSQKVKETYNAFDF-KNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
++ F+ K V+ ++S L GP ++ + GMLTGG L +
Sbjct: 295 HHVSREDCIAMFEIAKRVNTVEQSKELNTRQGPMIIVSASGMLTGGRILHHLASFGGDRR 354
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD-LVKF 176
N I L G+ GT G L G T+ + G + + ++ QL +FS H D I+ +
Sbjct: 355 NAILLSGFQAGGTRGAALAGGARTLRMFGREFPIEAEVVQLQSFSGHADADEILRWMSAG 414
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+P+ L HGE TL+ R++ ELG P + ES+ +
Sbjct: 415 PAPEMTYLTHGEPVAADTLRFRVEHELGRSARVPEHLESVYL 456
>gi|145590331|ref|YP_001152333.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
DSM 13514]
gi|145282099|gb|ABP49681.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 635
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 27/244 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
+ + V+ GGKVLIPAF+ GR QE+ +L+ + + RVPIY G+ ++ Y M
Sbjct: 392 ISETVSKGGKVLIPAFSTGRGQEILYILNKMMDGGLVPRVPIYVD-GMIVETLNVYLMYP 450
Query: 60 SWTSQKVKET----YNAFDFK-NVHNFDRS------------LIDAPGPCVLFATPGMLT 102
+ + +V E N F NV DR+ + + P ++ A GML
Sbjct: 451 HYLNPEVAEEIYGGVNPFTTSGNVVIVDRAKRVEDRINQVAKIAQSEEPAIIIAPHGMLN 510
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-----TKIDVRCQIH 157
GG L+ F AP + N + Y GTIG ++++G + +KI++R ++
Sbjct: 511 GGPVLDYFAQLAPDDKNKLVFVSYQAEGTIGRRILNGEREFVVRSLVGGESKINMRMEVV 570
Query: 158 QL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ FS H+D + +M V+ + P+ + L+HGE K+ +L I+ + I P E
Sbjct: 571 SIPGFSGHSDRRELMKYVEHIEPKPKKIALIHGEPSKIISLATSIELKYKITTVIPKVGE 630
Query: 215 SMCI 218
+ +
Sbjct: 631 RIRV 634
>gi|124028414|ref|YP_001013734.1| exonuclease [Hyperthermus butylicus DSM 5456]
gi|123979108|gb|ABM81389.1| predicted exonuclease [Hyperthermus butylicus DSM 5456]
Length = 643
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 31/246 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGL---TIQANMYY 55
+ K +A GKVLIP A+GRAQE+ ++L D + L IY + T Y
Sbjct: 397 ISKTIARRGKVLIPVMAVGRAQEILLVLVDALRKKLLPPETKIYIDGSIKEVTAIHLTYP 456
Query: 56 KMLISWTSQKVKETYNAFDFKNV-----HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVF 110
++L + ++ N FD +N+ + + P V+ AT GMLTGG S+E
Sbjct: 457 ELLSAQVRARILRGENPFDHENIVRVEGRQMREDIAKSDEPGVILATAGMLTGGPSVEYL 516
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGTKIDVRCQIHQLA---FSPH 164
+ AP N++ Y GT+G +++ G I + EG VR Q+ + FS H
Sbjct: 517 RLLAPDPRNVLVFVSYQAKGTLGRRILDGEREITMVDEEGKPQLVRIQMEVKSIDGFSGH 576
Query: 165 TDGKGIMDLVKFLS-----PQHVILVHGEKPKMATLKERIQSE---LG----IKCYDPAN 212
+D + L+ FL+ P+++IL HGE + L E I+ LG I+ Y P
Sbjct: 577 SDRR---QLLAFLANMKPKPKNIILNHGEPQSIHALAETIRRRARHLGLPEDIRVYTPTI 633
Query: 213 NESMCI 218
+++ I
Sbjct: 634 LDTLHI 639
>gi|255513556|gb|EET89822.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 419
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 11/210 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + GGKV+IP+FA+GRAQE+ + +DDY + +VPIY + ++ +I
Sbjct: 193 IKDTIKNGGKVVIPSFAVGRAQEVLLSIDDYINSGAIPKVPIYVDGMINKALRIHRHNVI 252
Query: 60 ----SWTSQKVKETYNAFDFKNVHNFDR-----SLIDAPGPCVLFATPGMLTGGFSLEVF 110
S+ + ++ F N ++ +++ + ++ T GM+TGG
Sbjct: 253 YCRKELQSRILMSDFDPFKSPNFVPVEKKGTRNAIVTSDESSIIVTTSGMITGGPITFYL 312
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGI 170
+ A + +N + L GY GTIG L G +IE++G +I + I S H D K +
Sbjct: 313 QKMAGNSLNKLILVGYQAEGTIGRMLQDGEKSIEIDGKRIKIEMSIEMHHLSAHADRKQL 372
Query: 171 MDLVKFLSP-QHVILVHGEKPKMATLKERI 199
+ + ++ + + +VHGE K +LKE +
Sbjct: 373 EQIPQRIAGIKKIFIVHGEYSKALSLKEEL 402
>gi|221064697|ref|ZP_03540802.1| beta-lactamase domain protein [Comamonas testosteroni KF-1]
gi|220709720|gb|EED65088.1| beta-lactamase domain protein [Comamonas testosteroni KF-1]
Length = 452
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 21/232 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLR-VPIYFSAGLTIQANMYYK 56
+ + GG V+IPAFA+GRAQ L D W +R LR VP+Y + + A +
Sbjct: 228 IERTTRRGGTVVIPAFAVGRAQSLIY---DLWLLRQRGRLRNVPVYLDSPMATNATV--- 281
Query: 57 MLISWTSQKVKETYNAFD-----FKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEV 109
L+ S K T + F+ K V + + S L P V+ + GM TGG L
Sbjct: 282 -LLHRHSDDHKLTQHDFEAAFSEVKYVRDVEESKALSANRYPKVIISASGMATGGRVLHH 340
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGK 168
+ + N + G+ AGT G KL+ G +++ G + ++ ++ +LA S H D
Sbjct: 341 IEAFGGIHQNTLLFSGFQAAGTRGRKLLEGAREVKIHGRWMPIKAEVAELAMLSAHADSD 400
Query: 169 GIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+M ++ + P+ V +VHGE L+ERIQ EL N+ +
Sbjct: 401 ELMRWLRSFTKAPERVFIVHGESDASEALRERIQRELNWHASVSMQNQEFAL 452
>gi|294495430|ref|YP_003541923.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666429|gb|ADE36278.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
Length = 637
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + + G VLIPAFA+GR+QE+ I++++ + + VP+Y G+ +A +
Sbjct: 401 IKETIDRQGVVLIPAFAVGRSQEVMIVIEEAIRKGIIDEVPVYLD-GMIWEATAIHATYP 459
Query: 60 SWTS--------QKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + QK + + + FK V + R++I+ P PCV+ +T GM++GG +E
Sbjct: 460 EYLNNDLRRLIFQKGQNPFLSECFKPVDSNELRRNIIENPHPCVILSTSGMMSGGPVMEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL-------EGTKIDVRCQIHQLAFS 162
FK +AP+E N + GY GT+G ++ G I L E +++ +I FS
Sbjct: 520 FKAFAPNERNTLVFVGYQADGTLGRRIQKGWKEIPLSSGGKGSETVLMNMDVEIVD-GFS 578
Query: 163 PHTDGKGIMDLVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D K +M+ K + PQ V HG++ L I I+ N E++
Sbjct: 579 GHSDRKQLMEFFKRMKPQPERVFTEHGDERSCIDLASSIHKRKKIETRALTNLETI 634
>gi|167840577|ref|ZP_02467261.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
MSMB43]
gi|424905728|ref|ZP_18329231.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
MSMB43]
gi|390928621|gb|EIP86025.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
MSMB43]
Length = 459
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILHYIAQLKKTGRMPHVPVFLDSPMATSVTELYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T A +++ D GP V+ A GM TGG L + +AP
Sbjct: 289 HRLTMSDADAIGQAAVMVRTVEQSKAIADHNGPMVIIAGSGMATGGRVLHHLERYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N I L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTILLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVEMISSLSAHADYGEILGWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 409 SSAPARTFVTHGEPAAADALRRRIEETLHWRCEVPSYLESV 449
>gi|254202926|ref|ZP_04909288.1| metallo-beta-lactamase family protein [Burkholderia mallei FMH]
gi|254208260|ref|ZP_04914609.1| metallo-beta-lactamase family protein [Burkholderia mallei JHU]
gi|254359427|ref|ZP_04975699.1| metallo-beta-lactamase family protein [Burkholderia mallei
2002721280]
gi|147745971|gb|EDK53049.1| metallo-beta-lactamase family protein [Burkholderia mallei FMH]
gi|147750947|gb|EDK58015.1| metallo-beta-lactamase family protein [Burkholderia mallei JHU]
gi|148028614|gb|EDK86574.1| metallo-beta-lactamase family protein [Burkholderia mallei
2002721280]
Length = 537
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 307 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 366
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 367 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVVIAGSGMATGGRVLHHLARYAPDSR 426
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 427 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 486
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 487 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 527
>gi|254176126|ref|ZP_04882784.1| metallo-beta-lactamase family protein [Burkholderia mallei ATCC
10399]
gi|160697168|gb|EDP87138.1| metallo-beta-lactamase family protein [Burkholderia mallei ATCC
10399]
Length = 525
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + VP++ + + Y+ +S
Sbjct: 295 KTFARGGVVVMPCFTVGRAQEILYYIAQLKQTGRMPHVPVFLDSPMATSVTEIYRRRLSD 354
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 355 HRLTMSDADAIGHAAVMVRTVEQSKAIADHHGPMVVIAGSGMATGGRVLHHLARYAPDSR 414
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 415 NTVLLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVQMISSLSAHADYGEILGWLGAQ 474
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
S P + HGE L+ RI+ L +C P+ ES+
Sbjct: 475 SSAPARTFVTHGEPAAADALRRRIEETLHWRCDVPSYLESV 515
>gi|443469174|ref|ZP_21059358.1| Metallo-beta-lactamase family protein, RNA-specific [Pseudomonas
pseudoalcaligenes KF707]
gi|442898496|gb|ELS25187.1| Metallo-beta-lactamase family protein, RNA-specific [Pseudomonas
pseudoalcaligenes KF707]
Length = 461
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 7/203 (3%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS---WTSQ 64
G V++P+FA+GRAQ L LL + + +PIY ++ + Y+ T +
Sbjct: 237 GIVVVPSFAVGRAQLLMYLLHRLKQEARIPDLPIYLNSPMATDVTALYQRFHDQHRLTRE 296
Query: 65 KVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLP 124
+ ++ F + + L P V+ A GM TGG L K AP+E N I L
Sbjct: 297 QCRDVCQVAHFVRTVDESKRLEQMRSPAVIIAGSGMATGGRVLHHLKALAPNERNTILLS 356
Query: 125 GYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQH 181
G+ GT G + SG + + G I +R ++ L S H D I+D + P+H
Sbjct: 357 GFQAGGTRGALIASGAREVRIHGEDIPIRAEVVALENLSAHADAGEILDWLGGFEHPPRH 416
Query: 182 VILVHGEKPKMATLKERIQSELG 204
+VHGE L+ RI ELG
Sbjct: 417 CFVVHGEPDAADCLRRRISQELG 439
>gi|397780985|ref|YP_006545458.1| hypothetical protein BN140_1819 [Methanoculleus bourgensis MS2]
gi|396939487|emb|CCJ36742.1| putative protein MJ1236 [Methanoculleus bourgensis MS2]
Length = 630
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 17/230 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V + GGKV+IPAFA+GR+QE+ + L++ + + V IY G+ +A +
Sbjct: 399 VSTTLKRGGKVIIPAFAVGRSQEVMLALEEGIRKKKIPPVKIYLD-GMIREATAIHTTYP 457
Query: 60 SW-----TSQKVKETYNAF---DFKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ +Q +E N F F V + D R + + PCV+ T GML+GG +E
Sbjct: 458 EYLNNDLRNQIFREGLNPFLADAFVQVDSPDLREQVISGEPCVIITTSGMLSGGPVMEYL 517
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGTKIDVRCQIHQLAFSPHTDG 167
K P E N++ GY GT+G ++ G I L E I++ FS H+D
Sbjct: 518 KALGPDERNMLIFVGYQADGTLGRRIQKGWREIPLGWRETIVINLEIATTD-GFSGHSDR 576
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
K +M+ V L P+ + +HG++ K L I I+ + P N E+
Sbjct: 577 KQLMNYVAHLQPRPEKIFTIHGDENKTIDLASSIYKRYRIETHSPMNLET 626
>gi|395647527|ref|ZP_10435377.1| beta-lactamase domain-containing protein [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 470
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 13/233 (5%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
G L+P+FA+GRAQ L L ++ + +PIY ++ + Y+ S ++
Sbjct: 235 GITLVPSFAVGRAQLLMYHLYRLKQQHAIPDLPIYLNSPMATDVTRLYQRFRSEHRLSLE 294
Query: 68 ETYNAFDFKNVHNFDRSLIDAPG------PCVLFATPGMLTGGFSLEVFKHWAPSEMNLI 121
+ D + F RS+ ++ P ++ A GM TGG L K AP+ +N +
Sbjct: 295 DCQGMCDGTH---FVRSVQESIALDLLRTPAIIIAASGMATGGRVLHHLKALAPNPLNTL 351
Query: 122 TLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL--S 178
+PG+ GT G +++G P++ + G + +R ++ + S H D IM ++ +
Sbjct: 352 LVPGFQAGGTRGAHIVAGAPSVRIHGQDVPIRAEVVPMETLSAHADADEIMQWLRGFKRA 411
Query: 179 PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDA 231
P+H +VHGE L++RI ELG P + + +P G + A
Sbjct: 412 PKHTYVVHGEPNASDVLRQRISQELGWSVSVPEYRDCVELPPVDASAPGLAQA 464
>gi|255311942|pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311943|pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311944|pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311945|pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+ +
Sbjct: 210 KTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L APGP V+ A GML GG L KH
Sbjct: 269 SEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L F H ++D
Sbjct: 329 LSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFYGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|297619493|ref|YP_003707598.1| beta-lactamase domain-containing protein [Methanococcus voltae A3]
gi|297378470|gb|ADI36625.1| beta-lactamase domain protein [Methanococcus voltae A3]
Length = 422
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 6/215 (2%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + + GKV+IP FA+GRAQE+ +++++Y L +VP+Y LT MY
Sbjct: 202 ISETIEENGKVIIPVFAVGRAQEIIVIINNYIRSGLLKKVPVYVCGSLTHTTGMYMSYS- 260
Query: 60 SWTSQKVKETYN--AFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
W + K+ N F N+ D ++ + PC++ +T GM+ GG L+ + +
Sbjct: 261 EWLNPKINNLMNNGTNPFGNLLKADDNIFNNNEPCIIISTSGMVQGGPVLQ-YLSLLKNP 319
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD-LVKF 176
N + L GY GTIG L G I I ++ +I ++ FS H D ++ L K
Sbjct: 320 KNKLILTGYQGEGTIGRSLEEGATEITPFKKPIQIKGKITKIEFSAHGDYNSLVRYLKKI 379
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
P+ I++HGE+ + +L I I P
Sbjct: 380 PEPKKAIVMHGERYQALSLAMTIWKMFKIPAIAPT 414
>gi|379005388|ref|YP_005261060.1| universal KH-domain/beta-lactamase-domain protein [Pyrobaculum
oguniense TE7]
gi|375160841|gb|AFA40453.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Pyrobaculum oguniense TE7]
Length = 635
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 27/244 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
+ + V+ GGKVLIPAF+ GR QE+ +L+ + + RVPIY G+ ++ Y M
Sbjct: 392 ISETVSKGGKVLIPAFSTGRGQEILYVLNKMMDGGLVPRVPIYVD-GMIVETLNVYLMYP 450
Query: 60 SWTSQKVKET----YNAFDFK-NVHNFDRS------------LIDAPGPCVLFATPGMLT 102
+ + +V E N F NV DR+ + + P ++ A GML
Sbjct: 451 HYLNPEVAEEIYGGVNPFTTSGNVVIVDRAKRVEDRINQVAKIAQSEEPAIIIAPHGMLN 510
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-----TKIDVRCQIH 157
GG L+ F AP + N + Y GTIG ++++G + +KI++R ++
Sbjct: 511 GGPVLDYFAQLAPDDKNKLVFVSYQAEGTIGRRILNGEREFVVRSLVGGESKINMRMEVV 570
Query: 158 QL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ FS H+D + +M V+ + P+ + L+HGE K+ +L I+ + I P E
Sbjct: 571 SIPGFSGHSDRRELMKYVEHIEPKPKKIALIHGEPSKIISLATSIELKYKITTVIPKVGE 630
Query: 215 SMCI 218
+ +
Sbjct: 631 RIRV 634
>gi|378951018|ref|YP_005208506.1| metallo-beta-lactamase family protein, RNA-specific [Pseudomonas
fluorescens F113]
gi|359761032|gb|AEV63111.1| Metallo-beta-lactamase family protein, RNA-specific [Pseudomonas
fluorescens F113]
Length = 451
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GG L+P+F +GRAQ L L +R + +PIY ++ + I Y+
Sbjct: 234 GGITLVPSFTVGRAQLLMYHLYRLKQRRAIPDIPIYLNSPMAIDVTRLYQRFGDEHRLSR 293
Query: 67 KETYNAFDFKNVHNFDRSLIDAPG------PCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
+E ++ + RS+ DA P V+ A GM TGG L K AP+ +N
Sbjct: 294 EECEG---MCHIAHPVRSVKDAMALDLQRTPAVIIAASGMATGGRVLHHLKSLAPNPINT 350
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFLS- 178
+ +PG+ GT G ++++G P + + G + + ++ + S H D IM ++
Sbjct: 351 LLMPGFQAGGTRGARIVAGEPAVRIHGKDVPINAEVVPMQTLSAHADADEIMQWLRGFKT 410
Query: 179 -PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
P+H +VHGE L+ RI+ ELG P +S+
Sbjct: 411 PPRHTYVVHGEPNASDVLRHRIRDELGWSVSVPEYRDSV 449
>gi|149204512|ref|ZP_01881478.1| metallo-beta-lactamase family protein [Roseovarius sp. TM1035]
gi|149142011|gb|EDM30060.1| metallo-beta-lactamase family protein [Roseovarius sp. TM1035]
Length = 460
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISW 61
+ A GG VLIP+FA+GRAQ L + + ER ++ VP++ ++ + + A Y +
Sbjct: 235 RTFARGGTVLIPSFAVGRAQGLMLHIARLMERGDIPYVPVFLNSPMAVNATEIYHRHHAE 294
Query: 62 TSQKVKETYNAFDF-KNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
++ F+ K V+ ++S L GP ++ + GMLTGG L +
Sbjct: 295 HHVSREDCIAMFEIAKRVNTVEQSKELNTRQGPMIIVSASGMLTGGRILHHLASFGGDRR 354
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD-LVKF 176
N I L G+ GT G L G T+ + G + + ++ QL +FS H D I+ +
Sbjct: 355 NAILLSGFQAGGTRGAALAGGARTLRMFGREFPIEAEVVQLQSFSGHADADEILRWMSAG 414
Query: 177 LSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+P+ L HGE TL+ R++ ELG P + ES+ +
Sbjct: 415 PAPEMTYLTHGEPVTADTLRFRVEHELGRSVRVPEHLESVYL 456
>gi|308198432|pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
gi|308198433|pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
V + GG +IPAFA+GR+QE+ I+L++ + + VP+Y G+ +A +
Sbjct: 404 VKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLD-GMIWEATAIHATHP 462
Query: 60 SWTS--------QKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + QK + + + FK V H + +I P PCV+ AT GM+ GG +E
Sbjct: 463 EYLNNDLRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEY 522
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGT-------KIDVRCQIHQLAFS 162
FK +A N + GY GTIG ++ G I + G K+++ Q+ FS
Sbjct: 523 FKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVD-GFS 581
Query: 163 PHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + +M+ VK + P+ V HG++ L + +L I+ N E++
Sbjct: 582 GHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETV 637
>gi|374262292|ref|ZP_09620861.1| hypothetical protein LDG_7272 [Legionella drancourtii LLAP12]
gi|363537291|gb|EHL30716.1| hypothetical protein LDG_7272 [Legionella drancourtii LLAP12]
Length = 452
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 7/222 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMY---YK 56
++K V GG V+IPAFA+ RAQ L + + ++ +P+Y + + I A+ +K
Sbjct: 227 INKTVKRGGSVIIPAFAVARAQLLLYYISLLKKENSIPDIPVYLDSPMAINASHIMCKHK 286
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ Q+ + N + +SL + P ++ + GM TGG L K +AP
Sbjct: 287 EDHRLSEQECMDLCNTATYTRTPEESKSLDNNSFPKIIISASGMATGGRILFHLKTYAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
N I GY GT G +++ G +++ G + +R Q+ L+ S H D + I+ +
Sbjct: 347 PKNTILFAGYQAGGTRGARMVKGEEEVKIHGQMVPIRAQVESLSNLSAHADYEEILHWLS 406
Query: 176 FLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
P+ V + HGE +LK +I+ + G C P ++
Sbjct: 407 HFRKPPKKVFITHGEPEAANSLKTKIEQQFGWTCIVPQYEQT 448
>gi|295676626|ref|YP_003605150.1| RNA-metabolising metallo-beta-lactamase [Burkholderia sp. CCGE1002]
gi|295436469|gb|ADG15639.1| RNA-metabolising metallo-beta-lactamase [Burkholderia sp. CCGE1002]
Length = 454
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 9/222 (4%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISW 61
+ A GG V++P FA+GRAQE+ + E + VP+Y + + Y+ ++
Sbjct: 229 RTFAKGGVVVMPCFAVGRAQEVLYHIAKLKENGRMAHVPVYLDSPMATSVTDVYRRHLAE 288
Query: 62 TSQKVKETYNAFDFKN--VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+ + NA D V N D+S + GP V+ A GM TGG L + +A
Sbjct: 289 HRLTISDA-NAIDKAAIMVRNVDQSKAIASHNGPMVIIAGSGMATGGRVLHHLRLYASDP 347
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKF 176
N I L GY AGT G L + P+I+L G + VR + + + S H D + +++ +
Sbjct: 348 RNTIALVGYQAAGTRGAALAAHEPSIKLFGEYVRVRANVESIPSLSAHADYRELLNWLSS 407
Query: 177 LS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
L+ P + HGE ++ I LG C P +S+
Sbjct: 408 LTDAPARTFVTHGEPAAADAMRRHIVETLGWSCEVPVYGQSV 449
>gi|421482108|ref|ZP_15929690.1| metallo-beta-lactamase family protein [Achromobacter piechaudii
HLE]
gi|400199443|gb|EJO32397.1| metallo-beta-lactamase family protein [Achromobacter piechaudii
HLE]
Length = 474
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 8/224 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ V GG V+IP+FA+GRAQ L L + R+ +P+Y + + A Y +
Sbjct: 233 RTVKRGGTVVIPSFAVGRAQLLLFHLRRLKQTGRIPQDLPVYLDSPMASSAVDVYLRHAA 292
Query: 61 WTSQKVKETYNAFDFKN-VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
E A+ V + ++S L +P P ++ + GM TGG L K +A
Sbjct: 293 DQRLSPSEARAAYGVAVCVSDVEQSKALDTSPMPKIIVSASGMATGGRVLHHLKRYANDP 352
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKF 176
N + G+ GT G ++ G T+++ G + VR ++ LA S H D I+ ++
Sbjct: 353 RNSVVFAGFQAVGTRGAAMLDGARTVKIHGEYVPVRAEVDNLAMLSAHADADEILRWLRG 412
Query: 177 L--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+P+ +VHGE L+ RI+ ELG +C+ +E+ +
Sbjct: 413 FVKAPKETFIVHGEPAAADALRLRIKDELGWRCHAVEQDETAVL 456
>gi|21226797|ref|NP_632719.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452209278|ref|YP_007489392.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
gi|20905093|gb|AAM30391.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452099180|gb|AGF96120.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
Length = 637
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
V + GG +IPAFA+GR+QE+ I+L++ + + VP+Y G+ +A +
Sbjct: 401 VKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLD-GMIWEATAIHATHP 459
Query: 60 SWTS--------QKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + QK + + + FK V H + +I P PCV+ AT GM+ GG +E
Sbjct: 460 EYLNNDLRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGT-------KIDVRCQIHQLAFS 162
FK +A N + GY GTIG ++ G I + G K+++ Q+ FS
Sbjct: 520 FKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVD-GFS 578
Query: 163 PHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + +M+ VK + P+ V HG++ L + +L I+ N E++
Sbjct: 579 GHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETV 634
>gi|150399442|ref|YP_001323209.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150012145|gb|ABR54597.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 421
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ + + GGKV+IP FA+GR+QE+ +++++Y + L+ VPIY + LT MY
Sbjct: 202 ISETIENGGKVIIPVFAVGRSQEIIVVINNYMKSGALKEVPIYVNGSLTHTIGMYMGYS- 260
Query: 60 SWTSQKVKETY-NAFD-FKN-VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
W + K+K T N + F N + N D PC++ +T GM+ GG L+ + +
Sbjct: 261 EWLNPKIKNTIENRINPFGNLIKNSDEVF--NKEPCIIISTSGMVQGGPILQ-YLSLLKN 317
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMD-LVK 175
N + L GY GTIG L G I I V + ++ FS H D ++ L K
Sbjct: 318 PKNKLILTGYQAEGTIGRSLEEGVKEITPFKRAIPVNGTVIKVEFSAHADYNSLIRYLKK 377
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPAN 212
P+ I++HGE+ + +L I I P N
Sbjct: 378 IPEPKKAIVMHGERYQALSLAMTIWKTFKIPAIAPTN 414
>gi|332530295|ref|ZP_08406241.1| beta-lactamase domain protein [Hylemonella gracilis ATCC 19624]
gi|332040281|gb|EGI76661.1| beta-lactamase domain protein [Hylemonella gracilis ATCC 19624]
Length = 452
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYY---K 56
+ + + GG V+IPAFA+GRAQ L +L+ + +PI+ + + I Y
Sbjct: 227 IQRTASRGGSVVIPAFAVGRAQALLVLIARLKAAHAIPDLPIFLDSPMAIDMTGIYLRHH 286
Query: 57 MLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
L + ++ + + R+L + P ++ + GM TGG L K AP
Sbjct: 287 KLHRLSPEESQRMCRVAKMVRTTDESRALNEVRYPSIIISASGMATGGRVLHHIKRLAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I L GY GT G ++ +G +I + G + + ++ QL S H D ++ +
Sbjct: 347 HRNTIVLAGYQAGGTRGARIAAGEKSIRIFGQDVPLNAEVTQLPGMSAHADAPQLLRWMG 406
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKC 207
PQ V L HGE L++RI+ ELG +
Sbjct: 407 AAPQPPQQVFLTHGEPEAADQLRQRIERELGWRA 440
>gi|153004903|ref|YP_001379228.1| beta-lactamase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152028476|gb|ABS26244.1| beta-lactamase domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 461
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 18/233 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYY---- 55
+ + V GG V+IPAFA+GR QE+ L R + +P++ + + + A +
Sbjct: 232 IRRAVRAGGAVIIPAFAIGRTQEVLFTLRALEARGEIPALPVFVDSPMAVDATALFLAHR 291
Query: 56 -------KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLE 108
LI + ++ F + ++L D GPCV+ + GM TGG L
Sbjct: 292 ADHDDETTRLIEAGEEPLRPAK--LSFCRSTDQSKALNDVRGPCVILSASGMATGGRVLH 349
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDG 167
P + L G+ AGT G L SG PT+ + G + V+ ++ ++ FS H D
Sbjct: 350 HLARRLPDPRTTVLLVGFQAAGTRGWTLQSGAPTVRIHGEDVPVKARVATISGFSAHADE 409
Query: 168 KGIMD-LVKFLS-PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
I L F S P +LVHGE +A K R+ LG + + PA+ E + +
Sbjct: 410 AEISRWLATFPSPPARTLLVHGEPAALAAAKARMDG-LGWRAHVPAHLEELAL 461
>gi|114568746|ref|YP_755426.1| beta-lactamase domain-containing protein [Maricaulis maris MCS10]
gi|114339208|gb|ABI64488.1| beta-lactamase domain protein [Maricaulis maris MCS10]
Length = 455
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 13/219 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GG +++PAFA+GRAQ L L + +PI+ + + I A+ + I
Sbjct: 237 GGTIIVPAFAVGRAQSLLYHLSQLKRDKRIPDLPIFLDSPMAINASELFCEHIDGHRLSA 296
Query: 67 KETYNAFDFKNVHNFDRSLIDAPG------PCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
E A D V + RS D+ P ++ + GM TGG + K++ N
Sbjct: 297 AECRQACD---VATYVRSTEDSKALTTNRMPKIIISASGMATGGRVVHHIKNYVSDPRNA 353
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD-LVKFLS 178
+ G+ AGT G ++ G ++++ G + VR +H L + S H D I+ L +F S
Sbjct: 354 LLFTGFQAAGTRGRAIVDGAQSVKIHGQNLPVRASVHNLDSLSAHADADEIIAWLSQFGS 413
Query: 179 -PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
P+ + HGE A+LK RI+ EL C+ P +E +
Sbjct: 414 APEMTFITHGEPVATASLKARIEQELSWPCHAPVLDEKV 452
>gi|186475870|ref|YP_001857340.1| beta-lactamase domain-containing protein [Burkholderia phymatum
STM815]
gi|184192329|gb|ACC70294.1| beta-lactamase domain protein [Burkholderia phymatum STM815]
Length = 454
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWE-RMNLRVPIYFSAGLTIQANMYYKMLISW 61
K A GG V++P FA+GRAQE+ + E R VP+Y + + Y+ +
Sbjct: 229 KTFAKGGVVVMPCFAVGRAQEILYYIAKLKETRRMANVPVYLDSPMATNVTEVYRKHLDE 288
Query: 62 TSQKVKETYNAFDFKNV--HNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
+ E A D + + D+S + GP ++ A GM TGG L + +AP
Sbjct: 289 HRLTISEA-QAIDKVAIMTRSVDQSKAIASHHGPMLIIAGSGMATGGRVLHHLRLYAPDP 347
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKF 176
N I L G+ AGT G L + +I+L G + VR + +A S H D + ++ +
Sbjct: 348 RNTIALVGFQAAGTRGAALAAHESSIKLHGEYVRVRANVESIASLSAHADYRELLQWLSH 407
Query: 177 LS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
L+ P + HGE ++ RI LG C P +++ + S
Sbjct: 408 LTDPPVRTFVTHGEPAAADAMRRRIAESLGWSCEVPVYQQTVELES 453
>gi|374327735|ref|YP_005085935.1| mRNA 3'-end processing factor [Pyrobaculum sp. 1860]
gi|356643004|gb|AET33683.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum sp. 1860]
Length = 644
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 27/242 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
V V+ GGKVLIPAF+ GR QE+ +L+ E + RVPIY G+ ++ Y M
Sbjct: 401 VSDTVSKGGKVLIPAFSTGRGQEILYILNKMIEGGLVPRVPIYVD-GMIVETLNAYLMYP 459
Query: 60 SWTSQKVKET----YNAFDFK-NVHNFDRS------------LIDAPGPCVLFATPGMLT 102
+ + +V E N F +V DR+ + + P V+ A GML
Sbjct: 460 HYLNPEVAEEIYGGVNPFTTSGSVVIVDRAKRVEDRINQVAKIAQSEEPAVIIAPHGMLN 519
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-----TKIDVRCQIH 157
GG L+ F A E N + Y GT+G ++++G + +KID+R ++
Sbjct: 520 GGPVLDYFAQLAYDERNKLIFVSYQAEGTLGRRILNGEREFVIRSLVGGESKIDMRMEVA 579
Query: 158 QL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ FS H+D + +M V+ + P+ ++L+HGE K+ +L I+ + I P E
Sbjct: 580 SIPGFSGHSDRRELMKYVEHMEPKPKKIVLIHGEPSKIISLATSIELKYKITTVIPKVGE 639
Query: 215 SM 216
+
Sbjct: 640 RI 641
>gi|307610917|emb|CBX00534.1| metallo-beta lactamase family [Legionella pneumophila 130b]
Length = 453
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 8/219 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMY---Y 55
+++ + GG V+IPAFA+GRAQ L + + + + +P++ + + I A Y
Sbjct: 227 INRTIKRGGSVIIPAFAVGRAQSLLYFIYELKRKGEIPKEIPVFLDSPMAINATKLLCTY 286
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K ++ + N + N + + P ++ A GM GG L K +AP
Sbjct: 287 KEDHHLNEEQCRGLCNVATYINTPEESKEIDRHKMPQIIIAASGMAQGGRILHHLKAFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
N + G+ GT G ++++G +++ G + +R Q+ + + S H D +++ +
Sbjct: 347 DPKNTLLFTGFQAGGTRGARMVNGEREVKIHGGLVPIRAQVVVMSSTSAHADYLEMLEWL 406
Query: 175 KFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
K + P+ V + HGE +LKE+I+S+LG C P+
Sbjct: 407 KHFTHPPKKVFITHGELHSAQSLKEKIESQLGFPCTIPS 445
>gi|222111751|ref|YP_002554015.1| beta-lactamase domain-containing protein [Acidovorax ebreus TPSY]
gi|221731195|gb|ACM34015.1| beta-lactamase domain protein [Acidovorax ebreus TPSY]
Length = 454
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 12/226 (5%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWER----MNLRVPIYFSAGLTIQANMYYKML 58
+ A GG ++P FA+GRAQ + + R LRV Y + + + A ++
Sbjct: 231 RLAARGGVAVVPVFAVGRAQTVMYAIAQLKARGEVPSGLRV--YLDSPMAVSATELFQNH 288
Query: 59 ISWTSQKVKETYN-AFDFKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+S T E + A VH+ D S L GP V+ + GM TGG L A
Sbjct: 289 LSETRINRSELHAMARGTTLVHSVDESKALARLHGPRVILSASGMATGGRVLHHLALHAG 348
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLV 174
N+I L G+ GT G ++ +G TI + G + +R ++ QLA S H DG ++ +
Sbjct: 349 DHRNMIILTGHQAGGTRGARIAAGEKTIRIHGRDVAIRAEVVQLATASAHADGDQLVAWL 408
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ + +P+ V +VHGE L++RI LG P + +S+ +
Sbjct: 409 RSMPSTPRQVYVVHGEMAAADMLRQRIDHALGCPVEVPEHGDSVTL 454
>gi|327311459|ref|YP_004338356.1| beta-lactamase domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326947938|gb|AEA13044.1| beta-lactamase domain protein [Thermoproteus uzoniensis 768-20]
Length = 635
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 27/242 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + + GKVLIPAF+ GRAQE+ +L+ R NL RVPIY G+ ++ Y M
Sbjct: 392 ITETIENRGKVLIPAFSTGRAQEILYILNREINRGNLKRVPIYVD-GMIVETLNAYLMYP 450
Query: 60 SWTSQKVKET----YNAFDFK-NVHNFDRS------------LIDAPGPCVLFATPGMLT 102
+ +++V E N F ++ +R+ + P V+ A GML
Sbjct: 451 HFLNREVAEEIYGGVNPFTSSGSIEVVERAKRIEDRINQIARITQDERPGVIIAPHGMLN 510
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNP-----TIELEGTKIDVRCQIH 157
GG L+ F H AP N + Y T+G ++++G +I + TK+ +R +
Sbjct: 511 GGPILDYFVHLAPDPANKLIFVSYQAENTLGRRILNGEKDFIVRSISMGETKVSMRMGVV 570
Query: 158 QL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ FS H+D + +M V+ + P+ V+L+HGE K+ +L I+ I P E
Sbjct: 571 SIPGFSGHSDRRELMKYVETVEPRPRKVVLIHGEPSKIVSLATSIELRYKITTVIPRVGE 630
Query: 215 SM 216
+
Sbjct: 631 RI 632
>gi|187920288|ref|YP_001889319.1| beta-lactamase domain-containing protein [Burkholderia phytofirmans
PsJN]
gi|187718726|gb|ACD19949.1| beta-lactamase domain protein [Burkholderia phytofirmans PsJN]
Length = 477
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 9/222 (4%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
+ A GG V++P FA+GRAQE+ + + + VP+Y + + Y+ ++
Sbjct: 229 RTFARGGVVVMPCFAVGRAQEILYYIAHLKQTGRMANVPVYLDSPMATGVTEVYRHHLNE 288
Query: 61 ---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
SQ A + V + +++ GP V+ A GM TGG L + +AP
Sbjct: 289 HRLTVSQAAMIDKAAIMVRTV-DQSKAIASHHGPMVIIAGSGMATGGRVLHHLRLYAPDP 347
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKF 176
N I L GY AGT G + + PTI++ G + +R + + + S H D ++ +
Sbjct: 348 RNTIALVGYQAAGTRGAAIAAHEPTIKIHGEYVRIRAHVETISSLSAHADYSETLNWLSA 407
Query: 177 LSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+SP + HGE L+ RI LG C P +++
Sbjct: 408 MSPAPTQTYITHGEPAAADALRRRIADTLGWPCTVPVYQQTV 449
>gi|121595530|ref|YP_987426.1| beta-lactamase domain-containing protein [Acidovorax sp. JS42]
gi|120607610|gb|ABM43350.1| beta-lactamase domain protein [Acidovorax sp. JS42]
Length = 454
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 12/226 (5%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWER----MNLRVPIYFSAGLTIQANMYYKML 58
+ A GG ++P FA+GRAQ + + R LRV Y + + + A ++
Sbjct: 231 RLAARGGVAVVPVFAVGRAQTVMYAIAQLKARGEVPSGLRV--YLDSPMAVSATELFQNH 288
Query: 59 ISWTSQKVKETYN-AFDFKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
+S T E + A VH+ D S L GP V+ + GM TGG L A
Sbjct: 289 LSETRINRSELHAMARGTTLVHSVDESKALARLHGPRVILSASGMATGGRVLHHLALHAG 348
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLV 174
N+I L G+ GT G ++ +G TI + G + +R ++ QLA S H DG ++ +
Sbjct: 349 DHRNMIILTGHQAGGTRGARIAAGEKTIRIHGRDVAIRAEVVQLATASAHADGDQLVAWL 408
Query: 175 KFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ + +P+ V +VHGE L++RI LG P + +S+ +
Sbjct: 409 RSMPSTPRQVYVVHGEMAAADMLRQRIDHALGCPVEVPEHGDSVTL 454
>gi|420154919|ref|ZP_14661792.1| beta-Casp domain protein [Clostridium sp. MSTE9]
gi|394760055|gb|EJF42691.1| beta-Casp domain protein [Clostridium sp. MSTE9]
Length = 536
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 24/230 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR----VPIYFSAGLTIQANMYYK 56
+ K +A GG V+IPAFA+GR QE+ + + ER ++ P+Y + L +A +
Sbjct: 230 IDKTLANGGNVIIPAFAVGRTQEVLYFIREIKERHLVKSFPDFPVYVDSPLAAEATRIFS 289
Query: 57 MLISW-----TSQKVKETYNAFDFKNVHNFDRSLIDAPG------PCVLFATPGMLTGGF 105
+S T + ++ + F N+ N +S D+ P V+ ++ GM G
Sbjct: 290 GDLSGYADEETLEILRSGFKPISFSNL-NISQSADDSRALNFDTTPKVIISSSGMCEAGR 348
Query: 106 SLEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFS 162
KH W P I GY GT+G L+ G ++L G +I V+ QIH A S
Sbjct: 349 IRHHLKHNLWRPE--CAILFVGYQANGTLGRLLVDGIKEVKLFGEEITVQAQIHNFRALS 406
Query: 163 PHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
H D +G+++ ++ PQ V +VHGE+ E + S+LG Y P
Sbjct: 407 GHADHEGLLEWLRAFQPKPQRVFIVHGERETCLAFSEEL-SDLGYDIYVP 455
>gi|226945896|ref|YP_002800969.1| RNA-metabolising metallo-beta-lactamase family protein [Azotobacter
vinelandii DJ]
gi|226720823|gb|ACO79994.1| RNA-metabolising metallo-beta-lactamase family protein [Azotobacter
vinelandii DJ]
Length = 468
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 15/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ K GG VLIP+FA+GR Q+L L +++ L + ++ + + I+AN Y
Sbjct: 236 LQKAHRDGGNVLIPSFAVGRTQDLLFYLGRFYQEGRLPQQAVFLDSPMAIRANAIYARFA 295
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDAPGP------------CVLFATPGMLTGGFSL 107
++ A K ++ L P P ++ A GM TGG +
Sbjct: 296 EEFDPLDRDLLRAKGVKRAEDWLPVLRMTPTPEESMAINRIKSGAIIIAGSGMCTGGRIV 355
Query: 108 EVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTD 166
FKH + + PG+ GT+G +++ G ++++ +I VR Q+H L FS H
Sbjct: 356 HHFKHNLWRQECHLVFPGFQAQGTLGRRIVDGAGSVKVLHQRIAVRAQVHTLGGFSAHAG 415
Query: 167 GKGIMDLVK-FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++D V+ F + LVHGE+ KM L++ + L P E + I
Sbjct: 416 QSQLIDWVQHFDHHPELYLVHGEREKMLVLQQTLHERLNWTATIPERGEQIAI 468
>gi|167576990|ref|ZP_02369864.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
TXDOH]
Length = 459
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 7/227 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + V ++ + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILYYIAQLKKTGRMPHVSVFLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 289 HRLTMSDADAIGHAAVMVRTVEQSKAIADHNGPMVIIAGSGMATGGRVLHHLARYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N I L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTILLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVEMISSLSAHADYGEILGWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 222
S P + HGE L+ RI+ L +C P+ ES+ + H
Sbjct: 409 SSAPMRTFVTHGEPAAADALRRRIEETLHWRCEVPSYLESVELEDAH 455
>gi|387906416|ref|YP_006336753.1| Metallo-beta-lactamase family protein, RNA-specific [Burkholderia
sp. KJ006]
gi|387581308|gb|AFJ90022.1| Metallo-beta-lactamase family protein, RNA-specific [Burkholderia
sp. KJ006]
Length = 481
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 99/223 (44%), Gaps = 23/223 (10%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K GG V++P F +GRAQE+ Y R+ RVP++ + + Y+
Sbjct: 229 KTFGRGGVVVMPCFTVGRAQEIL----HYIARLKASGRMARVPVFLDSPMATDVTEIYRH 284
Query: 58 LISWTSQKVKETYNAFDFKN--VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I V E NA + + D+S + D GP V+ A GM TGG L +
Sbjct: 285 HILEHRLTVSEA-NALGHAATMIRSVDQSKAISDHHGPMVIIAGSGMATGGRVLHHLARY 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY AGT G L + PT+++ G + VR QI + S H D + D
Sbjct: 344 APDPRNTIALVGYQAAGTRGAALAAHEPTVKIHGEYVRVRAQIESITTLSAHGDYE---D 400
Query: 173 LVKFL-----SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++K+L +P + HGE L+ RI L C P
Sbjct: 401 VLKWLGTMQGAPVRTFVTHGEPAAADALRRRIADTLHWSCEVP 443
>gi|256003924|ref|ZP_05428910.1| RNA-metabolizing metallo-beta-lactamase [Clostridium thermocellum
DSM 2360]
gi|281417321|ref|ZP_06248341.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
JW20]
gi|385778965|ref|YP_005688130.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
DSM 1313]
gi|419723019|ref|ZP_14250154.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
AD2]
gi|419725077|ref|ZP_14252132.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
YS]
gi|255992052|gb|EEU02148.1| RNA-metabolizing metallo-beta-lactamase [Clostridium thermocellum
DSM 2360]
gi|281408723|gb|EFB38981.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
JW20]
gi|316940645|gb|ADU74679.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
DSM 1313]
gi|380771697|gb|EIC05562.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
YS]
gi|380780786|gb|EIC10449.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
AD2]
Length = 541
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 20/243 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE------RMNLRVPIYFSAGLTIQANMY 54
++ + GG V+IP+FA+GR QEL L+ E +M P+Y + + I A
Sbjct: 233 INSTIEKGGNVIIPSFAVGRTQELIYELNKKKEVYDEKLKMLFATPVYIDSPMAISATEV 292
Query: 55 YKMLISWTSQKVKETY----NAFDFKNVHNFDRS------LIDAPGPCVLFATPGMLTGG 104
++ + ++ +E N DF + F R+ L + ++ A GM G
Sbjct: 293 FRNNLDCYDEEAREYIENGDNPLDFPGLQ-FTRTAEESKALNERKESSIIIAASGMCEAG 351
Query: 105 FSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSP 163
KH + + I GY GT+G +L+ G + L G +I V +I + FS
Sbjct: 352 RIRHHLKHNLWRKDSTIIFVGYQAEGTLGRRLLDGAKKVRLFGEEISVEARIEMIEGFSG 411
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
H D +G++ ++ + P+ + +VHGE+ M E I I+ P+ ES + +
Sbjct: 412 HADKEGLLKWIERFNRKPKKIFIVHGEEDAMIEFSEEINRRFNIETVIPSRGESFILNAH 471
Query: 222 HYV 224
+ +
Sbjct: 472 NVI 474
>gi|121595016|ref|YP_986912.1| beta-lactamase domain-containing protein [Acidovorax sp. JS42]
gi|241764370|ref|ZP_04762397.1| beta-lactamase domain protein [Acidovorax delafieldii 2AN]
gi|120607096|gb|ABM42836.1| beta-lactamase domain protein [Acidovorax sp. JS42]
gi|241366263|gb|EER60820.1| beta-lactamase domain protein [Acidovorax delafieldii 2AN]
Length = 452
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 7/211 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+++ A GG V+IPAFA+GRAQ L + ++ + +P+Y + + I A Y
Sbjct: 227 INQTAARGGVVVIPAFAVGRAQSLMYGIYQLKKQGRIHHLPVYLDSPMAIDATQLYHAHR 286
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ ++ + +A N ++L + GP V+ + GM TGG + K +AP
Sbjct: 287 DEHRLSPEECEGMCHAAKIVNKVEESKALSASRGPMVIISASGMATGGRVVHHLKSFAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I GY GT G ++ G T+ + G + +R ++ L S H D I+ ++
Sbjct: 347 RRNTILFAGYQAGGTRGAAILHGASTVRIHGEDVPIRAEVASLDNLSAHADADEIIAWLR 406
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELG 204
+P+ + HGE L+ RI ELG
Sbjct: 407 GFTQTPRRTFVTHGEPEAADALRSRIDHELG 437
>gi|254255493|ref|ZP_04948809.1| hypothetical protein BDAG_04838 [Burkholderia dolosa AUO158]
gi|124901230|gb|EAY71980.1| hypothetical protein BDAG_04838 [Burkholderia dolosa AUO158]
Length = 488
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 15/223 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V++P F +GRAQE+ Y R+ RVP++ + + Y+
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEIL----HYIARLKAAGRMARVPVFLDSPMATDVTEIYRR 284
Query: 58 LI---SWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
I T + +A + +++ + GP V+ A GM TGG L +A
Sbjct: 285 HILEHRLTLSEADALGHAATMTRTVDQSKAIGEHHGPMVVIAGSGMATGGRVLHHLTRYA 344
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
P N I L GY AGT G L + PT+++ G + VR Q+ + S H D + ++
Sbjct: 345 PDARNTIALVGYQAAGTRGAALAAHEPTVKIHGEYVRVRAQVESITTLSAHADYEEVLRW 404
Query: 174 VKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ + +P+ + HGE L+ RI L C P +
Sbjct: 405 LGTMQRAPERTFVTHGEPAAADALRRRIAERLHWPCEVPVYGQ 447
>gi|346722866|ref|YP_001180618.2| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|345106837|gb|ABP67427.2| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 540
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 18/232 (7%)
Query: 5 VAGGGKVLIPAFALGRAQELC-----ILLDDYWE-RMNLRVPIYFSAGLTIQANMYYKML 58
++ GGKV+IP+FA+GR QE+ +L E ++ V I+ + L A+ YK
Sbjct: 237 ISNGGKVIIPSFAVGRTQEILYEIAKVLTTGSDEAKLIQSVEIFVDSPLATSASGVYKKH 296
Query: 59 ISWTSQKVKETYNAF-------DFKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEV 109
I + ++ E + K V D S L D G C++ ++ GM G
Sbjct: 297 IDYFDEEAAEFIKKGIYPLEPKNLKFVRTADESKMLNDYEGSCIIISSSGMCEAGRIKHH 356
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
KH + N I GY T+G KL+ G +++ G +I+V+ +I + A+S H D
Sbjct: 357 LKHNLWKKNNTILFVGYQAPNTLGRKLLDGQKKVKIFGEEIEVKAKIEYIEAYSGHADKN 416
Query: 169 GIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
G++ + + PQ V +VHGEK + ++ + PA E I
Sbjct: 417 GLIKWIDSMKNKPQQVFIVHGEKESQVEFAQELKRNFDFDVHIPARGEFYVI 468
>gi|330825292|ref|YP_004388595.1| beta-lactamase domain-containing protein [Alicycliphilus
denitrificans K601]
gi|329310664|gb|AEB85079.1| beta-lactamase domain protein [Alicycliphilus denitrificans K601]
Length = 452
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 7/211 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+++ A GG V+IPAFA+GRAQ L + ++ + +P+Y + + I A Y
Sbjct: 227 INRTAARGGVVVIPAFAVGRAQSLMYGIYQLKKQGRIHHLPVYLDSPMAIDATRLYHAHR 286
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ ++ + +A N ++L GP V+ + GM TGG + K +AP
Sbjct: 287 DEHRLSPEECEGMCHAAKIVNKVEESKALSAGRGPMVIISASGMATGGRVVHHLKSFAPD 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I GY GT G ++ G T+ + G + +R ++ L S H D I+ ++
Sbjct: 347 RRNTILFAGYQAGGTRGAAILHGASTVRIHGEDVPIRAEVASLDNLSAHADADEIITWLR 406
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELG 204
+P+ + HGE L+ RI ELG
Sbjct: 407 GFTQTPRRTFVTHGEPEAADALRSRIDHELG 437
>gi|197103281|ref|YP_002128659.1| metallo-beta-lactamase family protein [Phenylobacterium zucineum
HLK1]
gi|196480557|gb|ACG80084.1| metallo-beta-lactamase family protein [Phenylobacterium zucineum
HLK1]
Length = 452
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE-----RMNLRVPIYFSAGLTIQANMYY 55
+ + V GG V+IPAFA+GRAQ L L W+ R+ L VP+Y + + I A+
Sbjct: 228 IERTVQRGGTVVIPAFAVGRAQAL---LYHIWKLKQAGRIPL-VPVYLDSPMAIDAS--- 280
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPG------PCVLFATPGMLTGGFSLEV 109
+ML S V + R + D+ P V+ + GM TGG L
Sbjct: 281 EMLCSHLDDHRLTPEVCRAACAVATYTRDVEDSKAINHNSMPKVIISASGMATGGRVLHH 340
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGK 168
K + P NLI G+ AGT G+ L+ G +++ G + + ++ LA S H D +
Sbjct: 341 MKAYGPDRRNLILFSGFQAAGTRGSALLGGAKEVKIHGQWVTINAEVKNLAMLSAHADAE 400
Query: 169 GIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKC 207
I+ + P +VHGE TL+ RI+ ELG C
Sbjct: 401 EILRWLGGFKRPPTRTFIVHGEPDASETLRTRIEGELGWSC 441
>gi|389581224|ref|ZP_10171251.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Desulfobacter postgatei 2ac9]
gi|389402859|gb|EIM65081.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Desulfobacter postgatei 2ac9]
Length = 427
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K + G V IPAFALGR QEL LD R+ +VP++ + L ++ Y L S+
Sbjct: 225 KALRDNGIVYIPAFALGRTQELIYELD----RIKTKVPVFIDSPLGLKITEIYTGLQSFW 280
Query: 63 SQKVKETYNA----FDFKN---VHNF--DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ K A DFKN V NF R L++ GP ++ A GM TGG ++
Sbjct: 281 DKEAKALKAAGDHPLDFKNLYSVENFRDHRKLMEIKGPAIIIAGSGMCTGGRIVDHLDQG 340
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMD 172
+ N I GY GT G +++ G KI V+ IH L+ +S H D +++
Sbjct: 341 LDNPKNDILFVGYQAKGTPGRRMIEG---------KIPVKAAIHTLSGYSAHADQAMLIN 391
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSELG 204
VK + P+ + LVHG+ L +Q LG
Sbjct: 392 WVKSMPEPPKKITLVHGDPHARRALANALQRHLG 425
>gi|134291711|ref|YP_001115480.1| beta-lactamase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134134900|gb|ABO59225.1| beta-lactamase domain protein [Burkholderia vietnamiensis G4]
Length = 481
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 99/223 (44%), Gaps = 23/223 (10%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K GG V++P F +GRAQE+ Y R+ RVP++ + + Y+
Sbjct: 229 KTFGRGGVVVMPCFTVGRAQEIL----HYIARLKASGRMARVPVFLDSPMATDVTEIYRH 284
Query: 58 LISWTSQKVKETYNAFDFKN--VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I V E NA + + D+S + D GP V+ A GM TGG L +
Sbjct: 285 HILEHRLTVSEA-NALGHAATMIRSVDQSKAISDHHGPMVIIAGSGMATGGRVLHHLARY 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY AGT G L + PT+++ G + VR QI + S H D + D
Sbjct: 344 APDPRNTIALVGYQAAGTRGAALAAHEPTVKIHGEYVRVRAQIESITTLSAHGDYE---D 400
Query: 173 LVKFL-----SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
++K+L +P + HGE L+ RI L C P
Sbjct: 401 VLKWLGTMQGAPVRTFVTHGEPAAADALRRRIADTLHWTCEVP 443
>gi|167615167|ref|ZP_02383802.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
Bt4]
gi|257141732|ref|ZP_05589994.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
E264]
Length = 459
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 7/227 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + V ++ + + Y+ +S
Sbjct: 229 KTFARGGVVVMPCFTVGRAQEILYYIAQLKKTGRMPHVSVFLDSPMATSVTEIYRRRLSD 288
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 289 HRLTMSDADAIGHAAVMVRTVEQSKAIADHNGPMVIIAGSGMATGGRVLHHLARYAPDSR 348
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N I L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 349 NTILLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVEMISSLSAHADYGEILGWLGAQ 408
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 222
S P + HGE L+ RI+ L +C P+ ES+ + H
Sbjct: 409 SSAPVRTFVTHGEPAAADALRRRIEETLHWRCEVPSYLESVELEDAH 455
>gi|119389195|pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389196|pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389197|pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389198|pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 13/197 (6%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWT 62
K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + Y L+ +
Sbjct: 210 KTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPXAGRVLSLYPRLVRYF 268
Query: 63 SQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
S++V+ + N F + + ++L APGP V+ A G L GG L KH
Sbjct: 269 SEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPXVVLAGSGXLAGGRILHHLKHG 328
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY G +G ++++ P + + G ++ +R +H L FS H ++D
Sbjct: 329 LSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLD 388
Query: 173 LVKFLSPQHVILVHGEK 189
++ V+LVHGE+
Sbjct: 389 WLQ--GEPRVVLVHGEE 403
>gi|154250807|ref|YP_001411631.1| beta-lactamase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154154757|gb|ABS61974.1| beta-lactamase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 472
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 13/228 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
+ K VA GG V+IPAFA+GRAQ L + + +R VP+Y + + I A+ ++L
Sbjct: 248 IEKTVARGGTVVIPAFAVGRAQSLLYYIWALKQAGRIRDVPVYLDSPMAINAS---ELLC 304
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDA------PGPCVLFATPGMLTGGFSLEVFKHW 113
+ ++ + R + D+ P ++ + GM TGG L K +
Sbjct: 305 AHLDDHRLSPPLCKQVCDIATYVREVEDSKEITANAHPKIIISASGMATGGRVLHHMKSF 364
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMD 172
AP + I G+ AGT G ++ G ++ G + VR +I +L S H DG IM
Sbjct: 365 APDRKHTILFSGFQAAGTRGRAMLQGARETKIHGQWVPVRAEIAELPMLSAHADGDEIMR 424
Query: 173 LVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ L PQ +VHGE L+ RI ELG P ++ +
Sbjct: 425 WLSALRRPPQQTFVVHGEPDASEALRVRIGRELGWHVAVPRQDQVFTL 472
>gi|383754023|ref|YP_005432926.1| hypothetical protein SELR_11950 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366075|dbj|BAL82903.1| hypothetical protein SELR_11950 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 537
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 19/235 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQAN-MYYKM 57
V+ + GG V+IP+FA+GR Q L + W+ R++ +PI + L I A ++ K
Sbjct: 232 VNDTMDRGGNVIIPSFAVGRTQTLLYYFYNLWKQGRLDGDIPIILDSPLAINATRIFMKN 291
Query: 58 LISWTSQKVKETYNAFDFKNVHNF--------DRSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ + +K N+ R+L + G ++ + GM G L
Sbjct: 292 YQEFSEEAIKMFGNSEKLTEFPQLRICKSPEESRALNSSEGSAIIISASGMADAGRILHH 351
Query: 110 FKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTD 166
KH W P + I GY G++G +L+ G + + G ++ V+ QI + FS H D
Sbjct: 352 LKHNLWRPE--STILFVGYQAEGSLGRRLVEGIKRVRVMGEEVAVKAQIQVMNGFSAHAD 409
Query: 167 GKGIMD-LVKFLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+MD + F +P+ + +VHGE +K RIQ E + Y P +++ I
Sbjct: 410 TDQLMDWITNFQNPKPAKIFIVHGEAQGQEFMKSRIQKEYQGEAYIPFRGDAVVI 464
>gi|330835859|ref|YP_004410587.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329567998|gb|AEB96103.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 638
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
++ + GGKVLIP A+GR QE+ ++++D ++ M VP+Y + GL + +
Sbjct: 398 INNTINRGGKVLIPVLAVGRGQEIMLVINDAMKKKMIPEVPVYVT-GLFDEVTAIHTAYP 456
Query: 60 SWTSQKVKETY-----NAFD---FKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
W ++V+++ N F FK + + R + P ++ AT GML GG ++E FK
Sbjct: 457 EWLGKEVRDSILFKDENPFTSDLFKRIEGY-REDVAHGEPSIILATSGMLNGGPAVEFFK 515
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-----TKIDVRCQIHQL-AFSPHT 165
AP N + Y GT+G K+ G I++ G I V + + FS H+
Sbjct: 516 ELAPDSRNSLVFVSYQAEGTLGRKVRDGAREIQIIGRDGRVDNIKVNLETTPIDGFSGHS 575
Query: 166 DGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSE 202
D +++ + ++ P++VIL HGE + K+ ++ +
Sbjct: 576 DKWQLLNFLGDITPKPRNVILNHGEANAIREFKKVVERQ 614
>gi|126179147|ref|YP_001047112.1| beta-lactamase domain-containing protein [Methanoculleus marisnigri
JR1]
gi|125861941|gb|ABN57130.1| beta-lactamase domain protein [Methanoculleus marisnigri JR1]
Length = 630
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 105/230 (45%), Gaps = 17/230 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLI 59
V + GGKV+IPAFA+GR+QE+ + L++ R + V IY G+ +A +
Sbjct: 399 VSTTIKRGGKVIIPAFAVGRSQEVMLALEEGIRRQKIPPVKIYLD-GMIKEATAIHTTYP 457
Query: 60 SW-----TSQKVKETYNAFDFKNVHNFD----RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ +Q +E N F + D R + PCV+ T GML GG +E
Sbjct: 458 EYLNSDLRNQIFREGLNPFLSEAFVQVDSPAIREKVVTGDPCVIITTSGMLNGGPVMEYL 517
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGTKIDVRCQIHQLAFSPHTDG 167
K P E N + GY GT+G ++ G I L E I++ FS H+D
Sbjct: 518 KALGPDERNSLIFVGYQADGTLGRRIQKGWREIPLGWRETIVINLEIATSD-GFSGHSDR 576
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
K +M+ V L P+ + +HG++ K L I I+ + P N E+
Sbjct: 577 KQLMNYVAHLQPRPEKIFTIHGDENKTIDLASSIYKRHRIETHSPMNLET 626
>gi|20807203|ref|NP_622374.1| RNA processing exonuclease [Thermoanaerobacter tengcongensis MB4]
gi|20515705|gb|AAM23978.1| predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacter tengcongensis MB4]
Length = 541
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 24/251 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCI-------LLDDYWERMNLRVPIYFSAGL-TIQAN 52
+ + + GG V+IP+FA+GR QE+ L D E +N +P+Y + L T +
Sbjct: 233 ITRTIKRGGNVIIPSFAVGRTQEILYELHRERDLYKDEIEFLN-NIPVYVDSPLATSITD 291
Query: 53 MYYKM---LISWTSQKVKETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGG 104
++ K L + +K+ DF N+H ++L + P ++ + GM G
Sbjct: 292 VFAKHPECLDDEAREYIKKGELPLDFPNLHFTHSAEESKALNEIKTPMIIISASGMCEAG 351
Query: 105 FSLEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AF 161
KH W P + GY GT+G KL+ G +++ G I V+ +I + +F
Sbjct: 352 RIKHHLKHNLWRPE--CTVLFVGYQAKGTLGRKLLDGEKDVKILGEDIHVKAEIEYIESF 409
Query: 162 SPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219
S H D +GI++ + P+ + +VHGE L ++I+++ GI+ P+ +
Sbjct: 410 SGHADQRGILEWISNFEKKPKKIFIVHGEDEAQEELADKIEAQFGIETLIPSRYDVYDFD 469
Query: 220 STHYVKAGASD 230
+K D
Sbjct: 470 KEELIKGEVED 480
>gi|255311946|pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311947|pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311948|pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311949|pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 13/199 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+
Sbjct: 208 LEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVR 266
Query: 61 WTSQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ S++V+ + N F + + ++L APGP V+ A GML GG L K
Sbjct: 267 YFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLK 326
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
H N + GY G +G ++++ P + + G ++ +R +H L FS +
Sbjct: 327 HGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGAAGQDEL 386
Query: 171 MDLVKFLSPQHVILVHGEK 189
+D ++ V+LVHGE+
Sbjct: 387 LDWLQ--GEPRVVLVHGEE 403
>gi|393777194|ref|ZP_10365487.1| metallo-beta-lactamase [Ralstonia sp. PBA]
gi|392715895|gb|EIZ03476.1| metallo-beta-lactamase [Ralstonia sp. PBA]
Length = 452
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 19/229 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLR-VPIYFSAGLTIQAN---M 53
+ + V GG ++IPAFA+GRAQ +L+ W +R LR VPIY + + A
Sbjct: 228 IERTVQRGGTIVIPAFAVGRAQ---LLIHSLWLLRQRGRLRNVPIYLDSPMATSATELLQ 284
Query: 54 YYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
++ + + +A + ++L P V+ + GM TGG L +
Sbjct: 285 THQHDHKLAAHDYEAACDAVTYVRDVEESKALSANRYPKVIISASGMATGGRVLHHIAAY 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMD 172
A N + G+ AGT G KL+ G +++ G I V ++ +L S H D +
Sbjct: 345 ASDHRNTLLFSGFQAAGTRGRKLLDGAREVKMFGQWIRVNAEVAELPMLSAHADSD---E 401
Query: 173 LVKFLS-----PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
L+++LS PQHV +VHGE L+ERI ELG P + +
Sbjct: 402 LMRWLSCFQKAPQHVFIVHGEPEASEALRERILRELGCAVSVPLQDREI 450
>gi|399911148|ref|ZP_10779462.1| RNA-metabolising metallo-beta-lactamase [Halomonas sp. KM-1]
Length = 432
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLD--------DYWERMNLRVPIYFSAGLTIQAN 52
+ + + GG V+IPAF++GR QEL L+ + W + + V +A T
Sbjct: 177 IDRALENGGTVVIPAFSVGRTQELLYELEGLIHDARSERWRELEIIVDSPLAARFT---E 233
Query: 53 MYYKMLISWTSQ---KVKETYNAFDFKNVHNFDRS---------LIDAPGPCVLFATPGM 100
+Y ++ W ++ +++ + F+N++ D L ++ P V+ A GM
Sbjct: 234 VYRELKPWWDAEAHRRLRSGRHPLSFENLYTVDDHAAHERTVAYLAESGKPAVVIAASGM 293
Query: 101 LTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPT---IELEGTKIDVRCQIH 157
++GG + K P E + + GY GT G + P+ +ELEG +I++R +I
Sbjct: 294 VSGGRVVNYLKRMLPDERHCVLFTGYQAQGTPGRNIQRFGPSGGWVELEGQRIEIRARIE 353
Query: 158 QL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERI 199
+ +S H D +++ V+ + P+ V LVHG+ A LK ++
Sbjct: 354 TVNGYSAHADQHDLLNFVRRMRHPPREVRLVHGDAHAQAALKAKL 398
>gi|320449268|ref|YP_004201364.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
gi|320149437|gb|ADW20815.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
Length = 431
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ + + GGKV IP+FA+ RAQE+ LL + R+ + PIY + + + Y L+
Sbjct: 208 LERTLGQGGKVFIPSFAVERAQEILFLLYENGHRLP-QAPIYLDSPMAERVLDLYPRLVR 266
Query: 61 WTSQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ S++V+ + N F + + + ++L PGP V+ A GMLTGG L K
Sbjct: 267 YFSEEVQAYFLAGKNPFRPRGLRVVESVEESKALNREPGPMVIIAGSGMLTGGRILHHLK 326
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
H N + GY G +G +++ I L G +I +R +H L FS H G
Sbjct: 327 HGLSDPKNTLVFVGYQPRGGLGAEIIQRPERIRLLGQEIPLRASVHTLGGFSGHA---GQ 383
Query: 171 MDLVKFLSPQ-HVILVHGEK 189
+L+ +L Q VILVHGE+
Sbjct: 384 DELLDWLHGQPRVILVHGEE 403
>gi|381189581|ref|ZP_09897107.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
gi|380452551|gb|EIA40149.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
Length = 431
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
GGKV IP FA+ RAQE+ +L + R+ R PIY + + + Y L+ + S++V+
Sbjct: 215 GGKVXIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273
Query: 68 ETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
+ N F + + ++L PGP V+ A GMLTGG L KH
Sbjct: 274 AYFLQGKNPFRPAGLEVVEHXEASKALNRXPGPMVVLAGSGMLTGGRILHHLKHGLSDPR 333
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N + GY G +G ++++ P + + G ++ +R +H L FS H ++D ++
Sbjct: 334 NALVFVGYQPRGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQ-- 391
Query: 178 SPQHVILVHGEK 189
V+LVHGE+
Sbjct: 392 GEPRVVLVHGEE 403
>gi|187928791|ref|YP_001899278.1| beta-lactamase domain-containing protein [Ralstonia pickettii 12J]
gi|241114316|ref|YP_002973791.1| beta-lactamase domain protein [Ralstonia pickettii 12D]
gi|309783428|ref|ZP_07678134.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|404397273|ref|ZP_10989064.1| hypothetical protein HMPREF0989_04691 [Ralstonia sp. 5_2_56FAA]
gi|187725681|gb|ACD26846.1| beta-lactamase domain protein [Ralstonia pickettii 12J]
gi|240868889|gb|ACS66547.1| beta-lactamase domain protein [Ralstonia pickettii 12D]
gi|308917827|gb|EFP63518.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|348610414|gb|EGY60107.1| hypothetical protein HMPREF0989_04691 [Ralstonia sp. 5_2_56FAA]
Length = 454
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 7/210 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GG V+IPAFA+GRAQ L L+ ++ + +P++ + + I A Y + +
Sbjct: 235 GGMVVIPAFAVGRAQLLLHLIHKLKQQGAIPDLPVFLDSPMAIDATEIYHRHHAEHKLSL 294
Query: 67 KE---TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
++ Y A R+L P V+ + GM TGG L KH AP N I L
Sbjct: 295 EDCLGMYKAARMIRTPEESRALAGLALPAVIISASGMATGGRVLHHLKHLAPDRRNTIIL 354
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKF--LSPQ 180
GY GT G +L +G ++ + G + VR ++ L S H D +++ + +P+
Sbjct: 355 AGYQAGGTRGARLQAGERSLRIHGEDVAVRAEVISLQGMSAHADASQLIEWLGSAPAAPR 414
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDP 210
V + HGE +++RI+ ELG P
Sbjct: 415 SVFVTHGEPGPADAMRQRIERELGWSASVP 444
>gi|406898346|gb|EKD41979.1| hypothetical protein ACD_73C00410G0001 [uncultured bacterium]
Length = 455
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 9/205 (4%)
Query: 9 GKVLIPAFALGRAQELCILLDDY-WERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
G +LIP+FA+GRAQ + L+ + E+ ++P+Y ++ + I+A Y Q +
Sbjct: 236 GVLLIPSFAVGRAQTILHLISELRLEKKIPKIPVYLNSPMAIKATDIYCGQNGLDEQHLS 295
Query: 68 E-----TYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLIT 122
+ +N DF ++L + GP +L + GM TGG L K + E N +
Sbjct: 296 KDDCELMFNIVDFVKTAEESKALNEKEGPMILISASGMATGGRILHHLKAFVGDEKNCVL 355
Query: 123 LPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL--SP 179
G+ AGT G ++SG I++ G VR ++ + S H D +M+ +K + +P
Sbjct: 356 FMGFQAAGTRGEAMLSGVDRIKIHGQYYPVRAEVSCIDTLSAHADYAEMMEWLKKIKQAP 415
Query: 180 QHVILVHGEKPKMATLKERIQSELG 204
Q +VHGE L+ I ELG
Sbjct: 416 QKTFIVHGEPAAQDHLRRHIIDELG 440
>gi|125973129|ref|YP_001037039.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
ATCC 27405]
gi|125713354|gb|ABN51846.1| RNA-metabolising metallo-beta-lactamase [Clostridium thermocellum
ATCC 27405]
Length = 541
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWE------RMNLRVPIYFSAGLTIQANMY 54
++ + GG V+IP+FA GR QEL L+ E +M P+Y + + I A
Sbjct: 233 INSTIEKGGNVIIPSFAAGRTQELIYELNKKKEVYDEKLKMLFATPVYIDSPMAISATEV 292
Query: 55 YKMLISWTSQKVKETY----NAFDFKNVHNFDRS------LIDAPGPCVLFATPGMLTGG 104
++ + ++ +E N DF + F R+ L + ++ A GM G
Sbjct: 293 FRNNLDCYDEEAREYIENGDNPLDFPGLQ-FTRTAEESKALNERKESSIIIAASGMCEAG 351
Query: 105 FSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSP 163
KH + + I GY GT+G +L+ G + L G +I V +I + FS
Sbjct: 352 RIRHHLKHNLWRKDSTIIFVGYQAEGTLGRRLLDGAKKVRLFGEEISVEARIEMIEGFSG 411
Query: 164 HTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
H D +G++ ++ + P+ + +VHGE+ M E I I+ P+ ES + +
Sbjct: 412 HADKEGLLKWIERFNRKPKKIFIVHGEEDAMIEFSEEINRRFNIETVIPSRGESFILNAH 471
Query: 222 HYV 224
+ +
Sbjct: 472 NVI 474
>gi|16082538|ref|NP_394086.1| metal-dependent RNase [Thermoplasma acidophilum DSM 1728]
Length = 639
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 29/234 (12%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLRVP---IYFSAGLTIQANMYYKMLISWTSQ 64
GG VLIP FA+GR+QE+ I+L+D N R+P +Y G+ ++A + + ++
Sbjct: 411 GGSVLIPVFAVGRSQEVMIVLEDAMR--NGRIPQMDVYLD-GMIMEAPAIHAAYPEYLNK 467
Query: 65 KVKETY-----NAF---DFKNVHNFDR--SLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
+++E N F FK V D+ + + P ++ AT GM+ GG +E FK W+
Sbjct: 468 ELREAIMVKKENPFLSPIFKKVETRDQREEIAENPETTIVLATSGMMNGGPVMEYFKAWS 527
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG--------TKIDVRCQIHQLAFSPHTD 166
+ + GY GT+G K+ SG I L G K+DV FS H+
Sbjct: 528 ADPKHTLVFVGYQADGTLGKKIQSGAQEITLSGEGKNVTYPVKMDVET---AEGFSGHST 584
Query: 167 GKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
K ++ + + P+ +++ HG+ K A ++ I+ Y N E++ +
Sbjct: 585 KKQLLAYIATMQPKPKKILVNHGDNGKTAEFARLVRQRFNIEAYALKNLETIRL 638
>gi|53804500|ref|YP_113600.1| metallo-beta-lactamase [Methylococcus capsulatus str. Bath]
gi|53758261|gb|AAU92552.1| metallo-beta-lactamase family protein [Methylococcus capsulatus
str. Bath]
Length = 452
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 9/219 (4%)
Query: 8 GGKVLIPAFALGRAQEL--CILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS---WT 62
GG VLIPAFA+GRAQ + CI RM VP+Y + + + A ++ S +
Sbjct: 234 GGVVLIPAFAVGRAQSVLYCIHRLKAAGRMP-DVPVYLDSPMAVDATELFRRYRSEHRLS 292
Query: 63 SQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLIT 122
S + + + N + L P VL + GM TGG L K +AP N +
Sbjct: 293 SAEAEAVCRTARYVNTAEESKGLSARRTPMVLISASGMATGGRVLHHLKAFAPDHRNTVL 352
Query: 123 LPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFL--SP 179
G+ GT G ++ G +++ G + VR ++ + S H D I+D ++ P
Sbjct: 353 FTGFQAPGTRGAAILGGAEAVKIHGEYVPVRAEVGLVENLSAHADYSEILDWLRQCPKPP 412
Query: 180 QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ HGE +L+ RI+ ELG C P E++ +
Sbjct: 413 LKTFVTHGEPEAADSLRFRIEHELGWDCRVPEYRETVGL 451
>gi|410672076|ref|YP_006924447.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
gi|409171204|gb|AFV25079.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
Length = 636
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTS---- 63
G VLIPAFA+GR+QE+ I+L+D + + VP+Y G+ +A + + +
Sbjct: 409 GVVLIPAFAVGRSQEVMIVLEDAIRKGEIPNVPVYLD-GMIWEATAIHATYPEYLNNDLR 467
Query: 64 ----QKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
QK + + A FK V + + ++ P PCV+ AT GM+ G +E FK +A E
Sbjct: 468 KLIFQKGENPFLAECFKPVDSNELRQKILQEPEPCVILATSGMMNAGPVIEYFKKFADDE 527
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIEL---EGTK-IDVRCQIHQL-AFSPHTDGKGIMD 172
N + GY GT+G ++ G I L GT I + Q+ + FS H+D + +MD
Sbjct: 528 KNTLVFVGYQADGTLGRRIQKGWKEIPLSTNNGTHVISMNMQVEVVDGFSGHSDRRQLMD 587
Query: 173 LVKFLS--PQHVILVHGEK 189
+K + P+ V HG++
Sbjct: 588 YIKKMKPRPERVFTEHGDE 606
>gi|448301186|ref|ZP_21491181.1| beta-lactamase [Natronorubrum tibetense GA33]
gi|445584700|gb|ELY39015.1| beta-lactamase [Natronorubrum tibetense GA33]
Length = 648
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGL---TIQANMYYKMLISWTSQ 64
G V+IPAFA+GR+QEL ++L++ + +PIY + T Y + L Q
Sbjct: 423 GIVVIPAFAVGRSQELMLVLEEAMREDEIPTMPIYLDGMIREATAIHTAYPEYLRDGLRQ 482
Query: 65 KV-KETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
++ E N F D R I P ++ +T GM+TGG + + P
Sbjct: 483 RILHEDENPFMADQFQQVDGGQPMREEIAGDEPSIILSTSGMVTGGPIMSWLELLGPESN 542
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEG--TKIDVRCQIHQLA-FSPHTDGKGIMDLVK 175
N + GY GT+G ++ SG + LEG + + C+I ++ FS H D G+ VK
Sbjct: 543 NTLLFVGYQADGTLGRRIKSGRTEVTLEGRANHLTLHCRIESVSGFSGHADRNGLEQYVK 602
Query: 176 FLSPQ--HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219
++PQ ++ VHG+ L + + I+ + P N E+ P
Sbjct: 603 EMNPQPETILCVHGDDQATDQLSSALYQKHNIRTHQPKNLETFRFP 648
>gi|150401471|ref|YP_001325237.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150014174|gb|ABR56625.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 426
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + GGKV+IP FA+GR+QE+ +L +Y L RVPIY L +Y
Sbjct: 203 ISATIEKGGKVIIPVFAVGRSQEIIAVLHNYMRSKLLKRVPIYVEGSLVHTTGIYMSHS- 261
Query: 60 SWTSQKVKET----YNAF-DFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
W + K++ N F D V+ + S I PC++ +T GM+ GG L+ K
Sbjct: 262 EWLNPKIRNNLENRINPFGDVTIVNKENSSEIYNKEPCIIISTSGMVQGGPILQYLK-LL 320
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLV 174
S N I L G+ T+G +L G I KI VR ++ ++ FS H+D ++ +
Sbjct: 321 KSPKNKIILTGFQAEETLGRQLEDGAEEITPFRNKIPVRGEVVKVEFSAHSDYNSLIRYM 380
Query: 175 KFL-SPQHVILVHGEKPKMATLKERIQSELGIKCYDPA 211
K + P+ V ++HGE+ + + I I P
Sbjct: 381 KKIPKPKKVFVMHGERYQSLSFAMTIWKNFKIPAIAPT 418
>gi|282165070|ref|YP_003357455.1| hypothetical protein MCP_2400 [Methanocella paludicola SANAE]
gi|282157384|dbj|BAI62472.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 636
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + + GGK L+P FA+GR+QE+ I+L++ + + VP+Y G+ +A +
Sbjct: 401 IRRTLQRGGKALVPTFAVGRSQEVMIVLEEAIRKGIIDNVPVYLD-GMIWEATAIHTTYP 459
Query: 60 SWTSQKVKETY-----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + ++++ N F + D +S++ P PC++ AT GM+ GG +E
Sbjct: 460 EYLNVELQDMIFHKGQNPFLSSSFVQVDSQQKRQSILADPSPCIVLATSGMMNGGPVMEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL--EGTKIDVRCQIHQL---AFSPH 164
FK + + N + GY GT+G ++ G I + EG +R ++ FS H
Sbjct: 520 FKQYGADKRNTLIFVGYQAEGTMGRRIQKGWTEIPMSTEGRTDVMRVEMEVATVDGFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D + +M+ VK + P+ +I HG++ K L I + + P N E++
Sbjct: 580 SDRRQLMEWVKRMDPRPERIITNHGDENKCLDLASSIYKKYKHETKSPMNLETI 633
>gi|154253893|ref|YP_001414717.1| beta-lactamase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157843|gb|ABS65060.1| beta-lactamase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 452
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLR-VPIYFSAGLTIQANMYYK 56
+ + GG V+IPAFA+GRAQ L D W +R LR VP+Y + + A
Sbjct: 228 IERTTRRGGTVVIPAFAVGRAQSLIY---DLWLLRQRGRLRTVPVYLDSPMATSATA--- 281
Query: 57 MLISWTSQKVKETYNAFD--FKNVHNFDRSLIDAPG------PCVLFATPGMLTGGFSLE 108
L+ + K + F+ F V + R + ++ P V+ + GM TGG L
Sbjct: 282 -LLHRHADDHKLAQHDFEAAFSEV-TYMRDVEESKALSANRYPKVIISASGMATGGRVLH 339
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDG 167
+ + S N + G+ AGT G KL+ G +++ G + ++ ++ +LA S H D
Sbjct: 340 HIEAFGGSHQNTLLFSGFQAAGTRGRKLLEGAREVKIHGRWMPIKAEVAELAMLSAHADS 399
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+M + + P+ V +VHGE L+ERIQ EL P N+ +
Sbjct: 400 DELMRWLGGFTRAPEGVFIVHGESNASEALRERIQRELKWHASVPMQNQEFAL 452
>gi|304436958|ref|ZP_07396921.1| metallo-beta-lactamase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369909|gb|EFM23571.1| metallo-beta-lactamase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 536
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 41/231 (17%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQK 65
GG V+IP+FA+GR Q L + W+ R++ +PI + L IQA +
Sbjct: 238 GGNVIIPSFAVGRTQTLLYYFYNLWKEGRLDDDIPIIIDSPLAIQATRVFL--------- 288
Query: 66 VKETYNAFDFKNVHNF--------------------DRSLIDAPGPCVLFATPGMLTGGF 105
+ Y FD + + F R+L A G ++ + GM G
Sbjct: 289 --KNYEEFDEETIAFFGHEGMIPAFPQVRIAETAAESRALNSAEGSAIILSASGMADAGR 346
Query: 106 SLEVFKH--WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFS 162
L KH W P L GY G++G +L+ G + + G +I V+ +I L FS
Sbjct: 347 VLHHLKHNLWRPESTVLFV--GYQAEGSLGRRLVDGIKRVRVLGEEIAVKAKIEVLDGFS 404
Query: 163 PHTDGKGIMDLVKFLS---PQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
H D ++ ++ ++ P V LVHGE LKERIQ ELG++ Y P
Sbjct: 405 AHADAAQTVEWMRAVTAPRPAKVFLVHGEGQAQEALKERIQEELGLEVYAP 455
>gi|444424461|ref|ZP_21219917.1| hypothetical protein B878_00889 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444242167|gb|ELU53682.1| hypothetical protein B878_00889 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 449
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNLR--VPIYFSAGLTIQANMYYKMLISWTSQK 65
GG +LIPAF++GR QEL ++ + NL +PI + L + Y+ ++
Sbjct: 231 GGVILIPAFSVGRTQELLFDIEQLIHQRNLSSSLPIILDSPLAKRVTKTYRCFKKLWGKE 290
Query: 66 VKETYN------AFD---FKNVHNFDRSLIDAPG----PCVLFATPGMLTGGFSLEVFKH 112
K+ N AF+ H ++L++ P ++ A GM GG + K
Sbjct: 291 AKQKLNNHRPPLAFEQCITVESHREHQALVNRLASTNEPAIVVAASGMCEGGRIVNYLKA 350
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIM 171
P E N + GY GT+G ++ SG+ T++++ I+ QIH ++ +S H D
Sbjct: 351 LLPDERNDVLFTGYQAQGTLGREIQSGSHTVDIDNQPIEANAQIHTISGYSAHADQS--- 407
Query: 172 DLVKFLS-----PQHVILVHGEKPKMATLKERIQSE 202
DL+KF++ P+ V L+HGEK L E++++E
Sbjct: 408 DLLKFVTGIPTQPKAVHLIHGEKEAKKELGEKLEAE 443
>gi|390945130|ref|YP_006408891.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Belliella baltica DSM 15883]
gi|390418558|gb|AFL86136.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Belliella baltica DSM 15883]
Length = 466
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GG LIPAFA+GR Q + L ++ + +PIY + + I YK + K
Sbjct: 240 GGVALIPAFAVGRTQMMLYYLHRLQQKGKIPDIPIYVDSPMAIDVTKLYKSFNEYHRLKP 299
Query: 67 ---KETYNAFDFKNVHNFDR-----SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
+E N F KN+H + SL G ++ + GM TGG + + P E
Sbjct: 300 LFEEEGSNPFSHKNLHYYQSQEASISLNAVRGDAIIISASGMATGGRVMHHLYNRLPKEQ 359
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
+ + GY GT G KL+ G+ ++++ G + ++ +I + S H D + ++D +
Sbjct: 360 DTVIFVGYQAVGTRGRKLLEGDQSVKMYGLDVPIKAKIEYIEGLSAHADQEELIDWSEGF 419
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ P+ LVHGE L+++++ EL P ES
Sbjct: 420 TSKPKITFLVHGEDEARIALQQKLKEELDWDAIIPEYLESF 460
>gi|237809221|ref|YP_002893661.1| beta-lactamase domain-containing protein [Tolumonas auensis DSM
9187]
gi|237501482|gb|ACQ94075.1| beta-lactamase domain protein [Tolumonas auensis DSM 9187]
Length = 452
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLR-VPIYFSAGLTIQANMYYK 56
+ + GG V+IPAFA+GRAQ L D W +R LR VP+Y + + A
Sbjct: 228 IERTTRRGGTVVIPAFAVGRAQSLIY---DLWLLRQRGRLRTVPVYLDSPMATSATA--- 281
Query: 57 MLISWTSQKVKETYNAFD--FKNVHNFDRSLIDAPG------PCVLFATPGMLTGGFSLE 108
L+ + K + F+ F V + R + ++ P V+ + GM TGG L
Sbjct: 282 -LLHRHADDHKLAQHDFEAAFSEV-TYMRDVEESKALSANRYPKVIISASGMATGGRVLH 339
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDG 167
+ + S N + G+ AGT G KL+ G +++ G + ++ ++ +LA S H D
Sbjct: 340 HIEAFGGSHQNTLLFSGFQAAGTRGRKLLEGAREVKIHGRWMPIKAEVAELAMLSAHADS 399
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+M + + P+ V +VHGE L+ERIQ EL P N+ +
Sbjct: 400 DELMRWLGGFTRAPEGVFIVHGESNASEALRERIQRELKWHASVPMQNQEFAL 452
>gi|170700306|ref|ZP_02891319.1| beta-lactamase domain protein [Burkholderia ambifaria IOP40-10]
gi|170134793|gb|EDT03108.1| beta-lactamase domain protein [Burkholderia ambifaria IOP40-10]
Length = 467
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 107/245 (43%), Gaps = 19/245 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V++P F +GR QE+ Y R+ VP++ + + A Y+
Sbjct: 229 KTFARGGVVVMPCFTVGRTQEIL----HYIARLKASGRMAHVPVFLDSPMATNATEIYRH 284
Query: 58 LISWTSQKVKET----YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I V E + A ++V + +++ + GP V+ A GM TGG L +
Sbjct: 285 HILEHRLTVSEANTLGHAATMVRSV-DQSKAIAEHHGPMVIIAGSGMATGGRVLHHLSRY 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY GT G L + PT+++ G + +R Q+ + A S H D + I+
Sbjct: 344 APDARNTIALVGYQAIGTRGAALAAREPTLKIHGEYVRLRAQVESITALSAHADYEEILT 403
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASD 230
+ + +P + HGE L+ RI L C P + C+ GA
Sbjct: 404 WLGTMQCAPVRTFITHGEPAAADALRRRIAERLHWPCEVPVYEQ--CVDLDEVATGGAQG 461
Query: 231 AFIRS 235
+ +RS
Sbjct: 462 SAMRS 466
>gi|307727886|ref|YP_003911099.1| RNA-metabolising metallo-beta-lactamase [Burkholderia sp. CCGE1003]
gi|307588411|gb|ADN61808.1| RNA-metabolising metallo-beta-lactamase [Burkholderia sp. CCGE1003]
Length = 490
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS---WTS 63
GG V+IP FA+GRAQ + + + VP++ + + Y+ + +S
Sbjct: 234 GGVVVIPCFAVGRAQAILHYIAQLKATGRMANVPVFLDSPMATSVTQLYRHHVGEHRVSS 293
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
+ +A + ++++ GP V+ A GM TGG L K +AP N I L
Sbjct: 294 TEANAISHAAQMVRTVDESKAILGRRGPMVIIAGSGMATGGRVLHHLKAFAPDHRNTIAL 353
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFLS--PQ 180
G+ AGT G L SG P I + G + VR + L + S H D ++ + ++ PQ
Sbjct: 354 VGFQAAGTRGAALASGAPDIRIHGEDVRVRASVVCLSSLSAHADYGELLSWLSSIAEPPQ 413
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSC 236
+ HGE ++ I+ C P +++ +P+ +A + + C
Sbjct: 414 RTFVTHGEPAAADAMRRHIEQTYHWPCEVPIYQQTVVLPTAADERAANTRVGVAGC 469
>gi|115361267|ref|YP_778404.1| beta-lactamase domain-containing protein [Burkholderia ambifaria
AMMD]
gi|115286595|gb|ABI92070.1| beta-lactamase domain protein [Burkholderia ambifaria AMMD]
Length = 468
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 107/245 (43%), Gaps = 19/245 (7%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-----RVPIYFSAGLTIQANMYYKM 57
K A GG V++P F +GR QE+ Y R+ VP++ + + A Y+
Sbjct: 230 KTFARGGVVVMPCFTVGRTQEIL----HYIARLKASGRMAHVPVFLDSPMATNATEIYRH 285
Query: 58 LISWTSQKVKET----YNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHW 113
I V E + A ++V + +++ + GP V+ A GM TGG L +
Sbjct: 286 HILEHRLTVSEANTLGHAATMVRSV-DQSKAIAEHHGPMVIIAGSGMATGGRVLHHLSRY 344
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMD 172
AP N I L GY GT G L + PT+++ G + +R Q+ + A S H D + I+
Sbjct: 345 APDARNTIALVGYQATGTRGAALAAHEPTLKIHGEYVRLRAQVESITALSAHADYEEILT 404
Query: 173 LVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASD 230
+ + +P + HGE L+ RI L C PA + C+ GA
Sbjct: 405 WLGTMQCAPVRTFITHGEPAAADALRRRIAERLQWPCEVPAYEQ--CVDLDEVASGGAQG 462
Query: 231 AFIRS 235
+ + S
Sbjct: 463 SAVLS 467
>gi|255311954|pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311955|pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311956|pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311957|pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 13/199 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
+ K ++ GGKVLIP FA+ RAQE+ +L + R+ R PIY + + + Y L+
Sbjct: 208 LEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVR 266
Query: 61 WTSQKVKETY----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ S++V+ + N F + + ++L APGP V+ A GML GG L K
Sbjct: 267 YFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLK 326
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
H N + GY G +G ++++ P + + G ++ +R +H L FS H +
Sbjct: 327 HGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDEL 386
Query: 171 MDLVKFLSPQHVILVHGEK 189
+D ++ V+LV GE+
Sbjct: 387 LDWLQ--GEPRVVLVVGEE 403
>gi|195953143|ref|YP_002121433.1| beta-lactamase domain-containing protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195932755|gb|ACG57455.1| beta-lactamase domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 451
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
G VLIP++AL R Q++ +L +++E +L + I+ + L I K+ + K
Sbjct: 235 GNVLIPSYALERTQDILYVLREFYEEGSLPKCKIFLDSPLAIGVT---KVFLRNPEYFRK 291
Query: 68 ETYNAFDFKN---------VHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
ETY+ ++ V + + S + D ++ A GML+GG L +H A
Sbjct: 292 ETYDIMQKEDPFSLPYLTMVRDVEESKQINDIQEGAIIIAGSGMLSGGRILHHIRHHAYK 351
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
E N I GY GT+G +++ + + G I+VR +I+ + FS H D +++ V
Sbjct: 352 EQNAIVFVGYQPHGTLGRRILEKQNPVFVMGEPINVRAKIYTVNGFSSHADQSELIEWVN 411
Query: 176 FLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+P+ + L+HGE+ KM LK+++ ++ Y P+ E + +
Sbjct: 412 AANPKKICLIHGEEDKMLVLKDKLGNK---NVYIPSRKEVIDV 451
>gi|83717528|ref|YP_438662.1| metallo-beta-lactamase [Burkholderia thailandensis E264]
gi|83651353|gb|ABC35417.1| metallo-beta-lactamase family protein [Burkholderia thailandensis
E264]
Length = 589
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 7/227 (3%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS- 60
K A GG V++P F +GRAQE+ + + + V ++ + + Y+ +S
Sbjct: 359 KTFARGGVVVMPCFTVGRAQEILYYIAQLKKTGRMPHVSVFLDSPMATSVTEIYRRRLSD 418
Query: 61 --WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEM 118
T +A +++ D GP V+ A GM TGG L +AP
Sbjct: 419 HRLTMSDADAIGHAAVMVRTVEQSKAIADHNGPMVIIAGSGMATGGRVLHHLARYAPDSR 478
Query: 119 NLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL 177
N I L GY AGT G L + PT+++ G + VR Q+ + + S H D I+ +
Sbjct: 479 NTILLVGYQAAGTRGAALAAHEPTLKIHGEYVRVRAQVEMISSLSAHADYGEILGWLGAQ 538
Query: 178 S--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 222
S P + HGE L+ RI+ L +C P+ ES+ + H
Sbjct: 539 SSAPVRTFVTHGEPAAADALRRRIEETLHWRCEVPSYLESVELEDAH 585
>gi|385209190|ref|ZP_10036058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Burkholderia sp. Ch1-1]
gi|385181528|gb|EIF30804.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Burkholderia sp. Ch1-1]
Length = 487
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 7/221 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS---WTS 63
GG V+IP FA+GRAQ + + + VP++ + + Y+ +S +S
Sbjct: 234 GGVVVIPCFAVGRAQSILHYIAQLKATGRMANVPVFLDSPMATSVTQLYRHHVSEHRLSS 293
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
+ NA + + ++++ GP V+ A GM TGG L K +AP N I L
Sbjct: 294 TEANAISNAAQMVHTVDESKAILSLNGPRVIIAGSGMATGGRVLHHLKAFAPDPRNTIAL 353
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVR-CQIHQLAFSPHTDGKGIMDLVKFL--SPQ 180
GY AGT G L +G PTI++ G + VR + + S H D I+ ++ + PQ
Sbjct: 354 VGYQAAGTRGAALAAGAPTIKIHGDYVRVRASVVSLSSLSAHADYAEILSWLRSIPQPPQ 413
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPST 221
+ HGE ++ I+ +C P E++ +P +
Sbjct: 414 RTFVTHGEPAAADAMRRHIEETYHWRCEVPLYLETVELPGS 454
>gi|257388099|ref|YP_003177872.1| beta-lactamase [Halomicrobium mukohataei DSM 12286]
gi|257170406|gb|ACV48165.1| beta-lactamase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 640
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 21/229 (9%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKV 66
GGK+LIPAFA+GR+QEL ++L++ ++ VP+Y G+ +A + + +
Sbjct: 410 GGKILIPAFAVGRSQELMLVLEEAMRSGDIPTVPVYLD-GMIREATAIHTAYPEYLRDDL 468
Query: 67 K-----ETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
+ E N F + D R I PC++ T GM+TGG + +
Sbjct: 469 RQRILYEDENPFLAEQFQQVDGGQEMRQDIADDEPCIILTTSGMVTGGPVMSWLRLLGSD 528
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIEL------EGTKIDVRCQIHQL-AFSPHTDGKG 169
N + GY GT+G ++ G I L ++ ++ +I + FS H D +G
Sbjct: 529 PDNTMMFVGYQAEGTLGRQIQRGQDEITLSDGSGPRAERVSLKMEIETVDGFSGHADRQG 588
Query: 170 IMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ V+ + P+ VI VHG++ L + + ++ Y+P N E+
Sbjct: 589 LETFVETMHPRPEKVICVHGDEQSTNQLSSALYQKFNMRTYNPKNLETF 637
>gi|395645476|ref|ZP_10433336.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
gi|395442216|gb|EJG06973.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
Length = 629
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 15/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V + + GGKV+IPAFA+GR+QE+ + L++ + + RV +Y G+ +A +
Sbjct: 398 VTRTIERGGKVIIPAFAVGRSQEVMLALEEGMRKEKIPRVKVYLD-GMIKEATAIHTTYP 456
Query: 60 SW-----TSQKVKETYNAFD---FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVF 110
+ +Q ++ N F F V + D R + PCV+ T GML+GG +E
Sbjct: 457 EYLNADLRNQIFRDGMNPFLAECFVQVDSSDLREKVIGGDPCVIVTTSGMLSGGPVMEYL 516
Query: 111 KHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTK-IDVRCQIHQL-AFSPHTDGK 168
AP E N + GY GT G +L G I + + + V+ I + FS H+D K
Sbjct: 517 YALAPDERNTLVFVGYQAEGTFGRRLQKGWREIPVGNRETMVVKLDIDTVDGFSGHSDRK 576
Query: 169 GIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
+M ++ + P+ + +HG++ L I I+ P N E+
Sbjct: 577 QLMGFIQHIQPRPEKIFTIHGDENSTIDLASSIYKRFHIETRSPLNLET 625
>gi|313680726|ref|YP_004058465.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
gi|313153441|gb|ADR37292.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
Length = 447
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQ----------- 50
+ + GGGKV++P+FAL RAQE+ + + + VP+Y + LT +
Sbjct: 224 QTLDGGGKVIVPSFALERAQEILFYIRRFEAEGAIPSVPVYVDSPLTTRISEIYGQIQEA 283
Query: 51 -----ANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
+ Y + L + QK++ T + + K ++ + GP ++ A GML+GG
Sbjct: 284 FSPLVQSFYRRGLDPFAPQKLRYTQSVDESKRLNFLE-------GPAIIIAGSGMLSGGR 336
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
L +H P N + GY G +G++++ G + + G + VR +++ L FS H
Sbjct: 337 ILHHLRHQLPDARNALVFVGYQPRGGLGHRIIEGADEVRIHGHDVRVRAKVYSLGGFSGH 396
Query: 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSE 202
++D + + + ++LVHGE P L +++
Sbjct: 397 AGRDELLDWLA--AERRIVLVHGEDPARVRLARALRAR 432
>gi|91772428|ref|YP_565120.1| beta-lactamase-like protein [Methanococcoides burtonii DSM 6242]
gi|91711443|gb|ABE51370.1| RNA-metabolizing metallo-beta-lactamase protein [Methanococcoides
burtonii DSM 6242]
Length = 636
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNLR-VPIYFSAGLTIQANMYYKMLISWTS---- 63
G VLIPAFA+GR+QE+ I+L+D R + VP+Y G+ +A + + +
Sbjct: 409 GIVLIPAFAVGRSQEVMIVLEDAIRRGIIDDVPVYLD-GMIWEATAIHATYPEYLNNNLR 467
Query: 64 ----QKVKETYNAFDFKNVHNFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSE 117
QK + + A FK V + D + +I+ P PCV+ +T GM+ G +E FK +AP
Sbjct: 468 KLIFQKGQNPFLAECFKPVDSNDLRKKIIEDPHPCVILSTSGMMNAGPVMEYFKAFAPDP 527
Query: 118 MNLITLPGYCLAGTIGNKLMSGNPTIEL------EGTKIDVRCQIHQLAFSPHTDGKGIM 171
N + GY GT+G ++ G I + E K+++ ++ FS H+D K +M
Sbjct: 528 NNTLVFVGYQADGTLGRRIQKGWKEIPVSSKGGTEVVKMNMGVEVVD-GFSGHSDRKQLM 586
Query: 172 DLVKFLSPQ--HVILVHGEK 189
+ K + PQ V HG++
Sbjct: 587 EYFKKMKPQPERVFTEHGDE 606
>gi|17544920|ref|NP_518322.1| hypothetical protein RSc0201 [Ralstonia solanacearum GMI1000]
gi|17427210|emb|CAD13729.1| putative beta-lactamase-like;rna-metabolising
metallo-beta-lactamase; protein [Ralstonia solanacearum
GMI1000]
Length = 452
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 21/232 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
VH+ + GG +LIPAFA+GR Q L L + VPIY + + +A +
Sbjct: 227 VHRTIEQGGTLLIPAFAVGRTQALLFCLYTLIRTHRIPHVPIYLDSPMAERATEVF---- 282
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDAP----------GPCVLFATPGMLTGGFSLEV 109
++ V+E + + +P P ++ A GM TGG L
Sbjct: 283 ---ARHVEELHIDAADCQAACALAVPVQSPQQSMHLGNDRAPKIILAASGMATGGRVLHH 339
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGK 168
K + + N I + G+ AGT G L++G + + G +I +R + Q+A S H D
Sbjct: 340 LKSFGGGKRNAILMSGFQAAGTRGAALLAGQRQLRVHGREIAIRATVEQIANLSAHADAN 399
Query: 169 GIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+M ++ S P+ +VHGE L++RI+ EL P +S +
Sbjct: 400 ELMAWLRGFSRAPEQTFIVHGEPAASDALRQRIERELQWPVRMPEYRQSYAL 451
>gi|78777465|ref|YP_393780.1| RNA-metabolising metallo-beta-lactamase [Sulfurimonas denitrificans
DSM 1251]
gi|78498005|gb|ABB44545.1| RNA-metabolising metallo-beta-lactamase [Sulfurimonas denitrificans
DSM 1251]
Length = 465
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVK 67
G V+IP+FAL R QE+ LL + L + IY + L I+A Y + S ++
Sbjct: 244 GNVIIPSFALERTQEILWLLHVMHDSGELPKCSIYLDSPLAIKATKLYNRYPVYLSDELI 303
Query: 68 ET----YNAFDF---KNVHNFDRSLI--DAPGPCVLFATPGMLTGGFSLEVFKH--WAPS 116
T + F F K + D+S+ ++ A GM TGG + KH W+P
Sbjct: 304 YTPGRGGDPFSFNWLKTSTSSDQSIAINKVKERAIIIAGSGMCTGGRIMHHLKHRLWSPK 363
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I GY + GT+G ++ G+ +++ G +I +R +I+ + FS H D K ++D V+
Sbjct: 364 --NAIIFVGYQVRGTLGRSIVDGDKHVKIYGEEIAIRAKIYTINGFSAHADQKELIDWVR 421
Query: 176 FLSP-QHVILVHGEKPKMATLKERIQSELG 204
+ +++ L+HGE+ KM I+ ELG
Sbjct: 422 PIEGLKNIFLIHGEEDKMEIFSREIKKELG 451
>gi|94313444|ref|YP_586653.1| exonuclease/RNA metabolizing protein [Cupriavidus metallidurans
CH34]
gi|93357296|gb|ABF11384.1| exonuclease/RNA metabolizing enzyme, metallo-beta-lactamase family
[Cupriavidus metallidurans CH34]
Length = 452
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 13/213 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ K VA GG V+IP FA+GRAQ L L +R VPIY ++ + I A ++L
Sbjct: 227 IRKTVARGGSVIIPVFAVGRAQLLLYCLYRLRQRRRFPDVPIYLNSPMAIDAT---RILT 283
Query: 60 SWTSQKVKETYNAFDFKNVHNFDRSLIDA------PGPCVLFATPGMLTGGFSLEVFKHW 113
T + + +V RS+ ++ P ++ A GMLTGG + + +
Sbjct: 284 EHTDELRIDPETCAAACSVAIPTRSMEESIRINRVDQPKIILAGSGMLTGGRVVHHLESF 343
Query: 114 APSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMD 172
+ L G+ AGT G L SG T+ + G ++++R + Q+ FS H D G+MD
Sbjct: 344 GQDPRSTFLLVGFQAAGTRGATLASGQRTLRMHGREVELRASVEQIRHFSAHADADGLMD 403
Query: 173 LVKFLS--PQHVILVHGEKPKMATLKERIQSEL 203
+ + P+ +VHGE L++RI+ L
Sbjct: 404 WMSAIGTPPRQTFIVHGEPGAADALRQRIEHSL 436
>gi|54295102|ref|YP_127517.1| hypothetical protein lpl2182 [Legionella pneumophila str. Lens]
gi|53754934|emb|CAH16422.1| hypothetical protein lpl2182 [Legionella pneumophila str. Lens]
Length = 452
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 7/210 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQAN---MYYKMLISWTS 63
GG VLIPAFA+GRAQ + L ++ + VP+Y + + I A + + ++
Sbjct: 234 GGTVLIPAFAVGRAQTMLYYLYILKQKKLIPDVPVYLDSPMAIDATELLLKHHNEHRLSA 293
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
++ + + + N ++ ++ + GM+TGG L K +AP + I L
Sbjct: 294 EECRAVCQIATYVHTPNESMAVDWGRESKIIISASGMMTGGRVLHHLKVYAPDPASTILL 353
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFL--SPQ 180
G+ AGT G K+++ P++++ G VR Q+ L S H D + I+ +K +P+
Sbjct: 354 TGFQAAGTRGEKMLNHEPSVKIHGDDYPVRAQVAMLTNASAHADYEEILVWLKHFEKAPK 413
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDP 210
V + HGE LKE I++ELG C P
Sbjct: 414 EVFITHGEPQAALGLKEHIEAELGWNCKIP 443
>gi|297569676|ref|YP_003691020.1| RNA-metabolising metallo-beta-lactamase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925591|gb|ADH86401.1| RNA-metabolising metallo-beta-lactamase [Desulfurivibrio
alkaliphilus AHT2]
Length = 479
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDD-YWERMNLRVPIYFSAGLTIQANMYYKMLI 59
V++ GG +LIPAFA+GR Q+L L Y + VPIY + L +A Y++
Sbjct: 246 VNETYQRGGCLLIPAFAVGRTQQLVYALHKLYLDNAIPEVPIYVDSPLATRATDIYRLHP 305
Query: 60 SWTSQKVKETYNAFDFKNVHNFD-----------RSLIDAPGPCVLFATPGMLTGGFSLE 108
+++++ + N FD + L P V+ + GM+ GG L
Sbjct: 306 EAYDREIRDFILKGNHDNPFGFDTLRYTQSVGDSKQLNALKKPAVIISASGMMEGGRILH 365
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDG 167
++ N I + G+ T+G K++ G T+++ G + ++ ++ QL FS H D
Sbjct: 366 HLRNRVSDPRNTILVTGWQAPNTLGRKIVEGQETVKVFGEEFPLQAKVEQLTGFSGHADR 425
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGI 205
+G++ + P H LVHGE L +Q ELG
Sbjct: 426 EGLLAWAGAMEKKPSHTFLVHGEAEATQALASALQEELGF 465
>gi|365092630|ref|ZP_09329716.1| beta-lactamase domain-containing protein [Acidovorax sp. NO-1]
gi|363415261|gb|EHL22390.1| beta-lactamase domain-containing protein [Acidovorax sp. NO-1]
Length = 452
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 7/223 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+++ A GG V++PAFA+GRAQ L +L + +P + ++ + Y
Sbjct: 227 INRTAARGGVVIVPAFAVGRAQSLMYVLATLKREGRIPDLPAFLNSPMAADTTELYHKHR 286
Query: 60 S---WTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS 116
S T + + A N R L D P V+ + GM TGG + K AP+
Sbjct: 287 SQHRLTPDQCRMMCTAAKVVNSVEESRKLNDMRYPAVIISASGMATGGRVVHHLKAMAPN 346
Query: 117 EMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVK 175
N I L GY AGT G L+ G I++ G + VR ++ L A S H D + ++ V
Sbjct: 347 PRNTILLAGYQAAGTRGAALVGGAKQIKIHGDYVPVRAEVASLGALSAHADREELLRWVG 406
Query: 176 FL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+ P+ V + HGE +L+ IQ + G C P + +++
Sbjct: 407 RMPQPPKRVFVTHGESVAADSLRIAIQEQHGWACTVPEHMQAV 449
>gi|309782661|ref|ZP_07677382.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|404397356|ref|ZP_10989147.1| hypothetical protein HMPREF0989_02869 [Ralstonia sp. 5_2_56FAA]
gi|308918439|gb|EFP64115.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|348614037|gb|EGY63600.1| hypothetical protein HMPREF0989_02869 [Ralstonia sp. 5_2_56FAA]
Length = 454
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 9/223 (4%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQEL--CILLDDYWERMNLRVPIYFSAGLTIQANMYYKML 58
V + + GG +LIPAFA+GR QEL C+ + R+ VPIY + + A +
Sbjct: 227 VQRTIGQGGTLLIPAFAVGRTQELLYCLYMLIREHRIP-HVPIYLDSPMAELATGVFAHH 285
Query: 59 ISWTSQKVKETYNAFDFK---NVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
I + + A R L + P ++ A GM TGG L K++
Sbjct: 286 IDDLHIEAADCQAACALAIPVQSPEQSRHLGNDRAPKIILAASGMATGGRVLHHLKNFGG 345
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLV 174
+ N I + G+ AGT G L++G + + G ++ +R + Q+ S H D +M +
Sbjct: 346 GKRNAILMSGFQAAGTRGAALLAGQRALRVHGREVAIRASVEQIQNLSAHADANELMTWL 405
Query: 175 KFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
+ + PQ +VHGE L++RI+ EL P ES
Sbjct: 406 RGFTRPPQQTFIVHGEPAASDALRQRIEHELQWSVCMPEYRES 448
>gi|397667286|ref|YP_006508823.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130697|emb|CCD08943.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 112/223 (50%), Gaps = 8/223 (3%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL--RVPIYFSAGLTIQANMY---Y 55
+++ V GG V+IPAFA+GRAQ L + + ++ + +P++ + + I A Y
Sbjct: 227 INQTVKRGGSVIIPAFAVGRAQSLLYFIYELKQQGAIPKDIPVFLDSPMAIDATHLLCTY 286
Query: 56 KMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAP 115
K T+++ + + + N + + P ++ A GM GG L K +AP
Sbjct: 287 KEDHHLTAEQCRGLCHVATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKAFAP 346
Query: 116 SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLV 174
+ + G+ GT G ++++G +++ G+ I ++ Q+ + + S H D +++ +
Sbjct: 347 DPKSTLLFTGFQAGGTRGARIVNGERQVKIHGSLIPIQAQVVVMSSTSAHADYLELLEWL 406
Query: 175 KFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
K L+ P+ V + HGE +LKE+I+ + G C P+ ++
Sbjct: 407 KHLTKQPKKVFITHGEPHSAQSLKEKIEKQFGFSCTIPSYQQT 449
>gi|426403987|ref|YP_007022958.1| beta-lactamase family exonuclease [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860655|gb|AFY01691.1| beta-lactamase family exonuclease [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 421
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 9 GKVLIPAFALGRAQELCILLDDYWE--RMNLRVPIYFSAGLTIQANMYYKMLISWTSQKV 66
G +LIP+FA+GRAQ L + + + +P+YF++ + + Y+ + Q++
Sbjct: 203 GVLLIPSFAVGRAQNLLFEITELKRDGEVPAHIPVYFNSPMGHEVAKLYERYHPF--QRL 260
Query: 67 KETYNAFDFKNVHNF-----DRSL-IDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL 120
A VH+ R+L D GP ++ A GMLTGG L K + P N+
Sbjct: 261 ASGQFAEIMSEVHSVKTAEESRALNDDKSGPKIIIAASGMLTGGRVLHHLKAFGPDPRNI 320
Query: 121 ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQ-IHQLAFSPHTDGKGIMDLVKFL-- 177
+ L G+ GT G L++G I++ G +++ C+ + +FS H D +M +K
Sbjct: 321 VLLAGFQSPGTRGYSLLNGAKEIKIHGLYVEINCKVVPSDSFSAHADRSDLMTWLKQAPE 380
Query: 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+P+ LVHGE L++RI +L P N+
Sbjct: 381 APKRTFLVHGESSAADELRKRIDKDLKWNVSVPRMNQ 417
>gi|82524014|emb|CAI78693.1| predicted exonuclease of the beta-lactamase fold involved in RNA
processing [uncultured gamma proteobacterium]
Length = 426
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 15/233 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + A GGK++IPAFA+GR QEL +L +++ + +P++ + L + A ++
Sbjct: 194 IREVAAAGGKIIIPAFAIGRTQELIYMLHKLYDQNRIPEIPVFIDSPLAVHATDVFRKYA 253
Query: 60 SWTSQKVKETY-----NAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEV 109
++ ++ + + F F+ + + + L P ++ + GM GG L
Sbjct: 254 AYYDREAFRIFLAQHNDPFAFQMLKYVESTEESKRLNGLAFPHIIISASGMAEGGRILHH 313
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGK 168
+ + LI G+ T+ K+M GN T+++ G + V+ ++ L FS H D +
Sbjct: 314 LANNIENPKTLILFVGFAAKETLARKIMDGNETVKIFGEEHRVKARVKILQNFSAHGDRR 373
Query: 169 GIMDLVKFLSP---QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
I++ VK SP +++ LVHGE + L++ QS P NE + I
Sbjct: 374 DIIEYVKMSSPAKLKNLFLVHGEPDQAIPLRDAFQSMGYQNVQYPVLNEKVMI 426
>gi|430807325|ref|ZP_19434440.1| exonuclease/RNA metabolizing protein [Cupriavidus sp. HMR-1]
gi|429500380|gb|EKZ98755.1| exonuclease/RNA metabolizing protein [Cupriavidus sp. HMR-1]
Length = 452
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 29/221 (13%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ K VA GG V+IP FA+GRAQ L L +R VPIY ++ + I+A ++
Sbjct: 227 IRKTVARGGSVIIPVFAVGRAQLLLYCLYRLRQRRRFPDVPIYLNSPMAIEAT----RIL 282
Query: 60 SWTSQKVK--------------ETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGF 105
S S +++ T + + ++ D+ P ++ A GMLTGG
Sbjct: 283 SEHSDELRIDPETCAAACSVAIPTRSMEESIRINRVDQ-------PKIILAGSGMLTGGR 335
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPH 164
+ + + + L G+ AGT G L SG T+ + G ++++R + Q+ FS H
Sbjct: 336 VVHHLESFGQDPRSTFLLVGFQAAGTRGATLASGQRTLRMHGREVELRASVEQIRHFSAH 395
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSEL 203
D G+MD + + P+ +VHGE L++RI+ L
Sbjct: 396 ADADGLMDWMSAIGTPPRQTFIVHGEPSAADALRQRIEHSL 436
>gi|20092670|ref|NP_618745.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
gi|19917954|gb|AAM07225.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
Length = 637
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYKMLI 59
V V GG LIPAFA+GR+QE+ I+L++ + + VP+Y G+ +A +
Sbjct: 401 VKNTVERGGIALIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLD-GMIWEATAIHATHP 459
Query: 60 SWTS--------QKVKETYNAFDFKNV--HNFDRSLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + QK + + + FK V H + +I P PCV+ +T GM+ GG ++
Sbjct: 460 EYLNNDLRKLIFQKGQNPFLSECFKPVDSHETRQKIIQNPHPCVILSTSGMMNGGPVMDY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGT-------KIDVRCQIHQLAFS 162
F+ +A N + GY GT+G ++ G I + G K+++ Q+ FS
Sbjct: 520 FRTFAEDPRNTLVFVGYQADGTVGRRIQKGWKEIPMTGKNGSTEILKMNMEVQVVD-GFS 578
Query: 163 PHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
H+D + +M+ +K + P+ V HG++ L + +L I+ N E++
Sbjct: 579 GHSDRRQLMEYIKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETV 634
>gi|147919476|ref|YP_686784.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Methanocella arvoryzae MRE50]
gi|110622180|emb|CAJ37458.1| mRNA cleavage/polyadenylation specificity factor,100 kD subunit
[Methanocella arvoryzae MRE50]
Length = 636
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 19/234 (8%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + +A GGKVLIP FA+GR+QE+ I+L++ R + VP+Y G+ +A +
Sbjct: 401 IKQTLARGGKVLIPTFAVGRSQEVMIVLEEAIRRGIIDNVPVYLD-GMIWEATAIHTTYP 459
Query: 60 SWTSQKVKETY-----NAF---DFKNVHNFDR--SLIDAPGPCVLFATPGMLTGGFSLEV 109
+ + ++++ N F F V + + ++ P PC++ AT GM+ GG +E
Sbjct: 460 EYLNVELQDMIFHKGQNPFLSPSFVQVDSPQKREKILADPSPCIVLATSGMMNGGPVMEY 519
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELE-GTKID---VRCQIHQL-AFSPH 164
K + N + GY GT+G ++ G + + G K + + Q+ + FS H
Sbjct: 520 LKTYGHDRRNTLIFVGYQAEGTLGRRIQKGWNELPMSVGGKTEIMKINLQVTTVDGFSGH 579
Query: 165 TDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESM 216
+D + +M+ VK + P+ +I HG++ K L I + ++ P N E++
Sbjct: 580 SDRRQLMEYVKRMDPRPERIITNHGDENKCLDLASSIYKKYKLETKSPMNLETI 633
>gi|307721979|ref|YP_003893119.1| beta-lactamase domain-containing protein [Sulfurimonas autotrophica
DSM 16294]
gi|306980072|gb|ADN10107.1| beta-lactamase domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 466
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISW 61
K + G VLIP+FA+ R QEL +L D +E L + ++ + + +A Y+ +
Sbjct: 238 KTLNSHGNVLIPSFAVERTQELLCILRDMYESGELPKCKVFLDSPMATKATAVYRTYVDE 297
Query: 62 TSQK----VKETYNAFDFKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+ K V++ F+F+++ + + + D ++ A GM GG FKH
Sbjct: 298 LTNKCQKNVQQDGTVFNFESLIYTETPEASKGINDVQSRAIIIAGAGMCNGGRITHHFKH 357
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIM 171
+ N + G+ GT+G +++ G I + G I V+ IH + FS H D GIM
Sbjct: 358 RIWDKRNAVVFVGFQAEGTLGREIVDGAKWINILGEDIIVKSSIHTINGFSAHADRDGIM 417
Query: 172 DLVKFLSP-QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+ + + + V VHGE + K ++ EL + + A E + +
Sbjct: 418 EWISSMKDLKKVFFVHGELESQKSFKAMVKKELNLDGHIVAFKEKIVL 465
>gi|352683091|ref|YP_004893615.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
gi|350275890|emb|CCC82537.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
Length = 635
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 27/242 (11%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + + GGKVLIPAF+ GRAQE+ +L+ + +L + PIY G+ ++ Y M
Sbjct: 392 ITETIERGGKVLIPAFSTGRAQEILYILNREMNKGSLKKAPIYVD-GMIVETLNAYLMYP 450
Query: 60 SWTSQKV-KETYNAFD----FKNVHNFDRS------------LIDAPGPCVLFATPGMLT 102
+ +++V +E YN + N+ +R+ ++ P V+ A GML
Sbjct: 451 HFLNREVAEEIYNGINPFTSSGNIQIIERAKRLEDRINQVAKIVQDGQPGVIIAPHGMLN 510
Query: 103 GGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGN-----PTIELEGTKIDVRCQIH 157
GG LE F H AP N + Y T+G ++++G ++ + K+ ++ +
Sbjct: 511 GGPILEYFVHLAPDPANKLIFVSYQAENTLGRRILNGERDFIVRSLSMGEVKVSMKMGVL 570
Query: 158 QL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
+ FS H+D + +M ++ L P+ ++L+HGE K +L I+ + P E
Sbjct: 571 SIPGFSGHSDRRELMKYIETLEPRPKKIVLIHGEPSKTISLATSIEIRYKVTTVIPKVGE 630
Query: 215 SM 216
+
Sbjct: 631 RI 632
>gi|410029643|ref|ZP_11279473.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Marinilabilia sp. AK2]
Length = 466
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 12/230 (5%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+ + GG +IP+FA+GR Q + L ++ + +PIY + + I YK
Sbjct: 233 IRETYRNGGVAVIPSFAVGRTQIILYYLHLMQQKGKIPDIPIYVDSPMAIDVTKLYKRFH 292
Query: 60 SWTSQKV---KETYNAFDFKNVHNFDR-----SLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ +E N F KN+H + SL + G ++ + GM TGG L
Sbjct: 293 QYHRLGPVIDEEGANPFLHKNLHYYQSQEASMSLNNLRGDAIIISASGMATGGRILHHLY 352
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
H P+E + I GY GT G +L+ G T ++ G +I V+ +I+ + S H D +
Sbjct: 353 HRLPNEQDSIIFVGYQAEGTRGRRLLEGENTSQMYGIEIPVKAKIYNIEGMSAHADQDEL 412
Query: 171 MDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
++ + + P+ L+HGEK TL ++ EL P ES +
Sbjct: 413 IEWAEGFATKPKVTFLIHGEKEASETLSNKLHQELEWNTIVPEYLESFVL 462
>gi|88858600|ref|ZP_01133241.1| predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Pseudoalteromonas tunicata D2]
gi|88818826|gb|EAR28640.1| predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Pseudoalteromonas tunicata D2]
Length = 460
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKML---ISWTS 63
GG L+PAFA+GRAQ + L+ + + + +P+Y ++ + I+A Y T+
Sbjct: 243 GGIFLMPAFAVGRAQLMLHLIQELKQAALIPNIPVYLNSPMAIKATSVYNHFNKEHKLTA 302
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
++ K + ++ LI P ++ + GM TGG L K+ P++ N I
Sbjct: 303 EQCKAIDDGTEYVKTMEQSTLLISKVMPAIIISASGMATGGRVLHHLKNLLPNDKNTIAF 362
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFLS--PQ 180
G+ AGT G L++G I+L G + V+ +I L FS H D + I+D +K P+
Sbjct: 363 LGFQAAGTRGEALVNGATRIKLHGEYVPVKAEILALDNFSAHGDYQDIIDWLKQAEQLPK 422
Query: 181 HVILVHGEKPKMATLKERIQSELGIKC 207
+ + HGE ++ ++ +LGI+
Sbjct: 423 KIFITHGEPTASDAMRCHLKEQLGIEA 449
>gi|312130864|ref|YP_003998204.1| RNA-metabolising metallo-beta-lactamase [Leadbetterella byssophila
DSM 17132]
gi|311907410|gb|ADQ17851.1| RNA-metabolising metallo-beta-lactamase [Leadbetterella byssophila
DSM 17132]
Length = 464
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWT 62
CV GK++IPAFA+ R QE+ +LD L +P+Y + L ++A +++I
Sbjct: 236 CVQKRGKLIIPAFAVDRTQEMVFILDQLESSGRLPSIPVYVDSPLAVEAT---RIMI--- 289
Query: 63 SQKVKETYN------------AFDFKNVHNF-----DRSLIDAPGPCVLFATPGMLTGGF 105
+ KE YN AF FKN+ ++L P PC++ + GM G
Sbjct: 290 --RHKEDYNQEILDYIEKDGDAFGFKNLTYITDVQASKALNFRPEPCIIISASGMAEAGR 347
Query: 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164
+ N I + GYC T+G +L +GN T+++ G VR + + +FS H
Sbjct: 348 IKHHIANNVEDRKNTILIVGYCSPNTLGAQLKAGNSTVKIFGEDKLVRADVEVMDSFSAH 407
Query: 165 TDGKGIMDLV---KFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNE 214
D K +M+ + K +++ LVHGE +E++ + K PA E
Sbjct: 408 ADYKEMMEYLSCQKVEKVKNLFLVHGEIKTQEAFREKLLGQGFRKVTIPAQGE 460
>gi|451948972|ref|YP_007469567.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Desulfocapsa sulfexigens DSM 10523]
gi|451908320|gb|AGF79914.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Desulfocapsa sulfexigens DSM 10523]
Length = 503
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 30/230 (13%)
Query: 3 KCVAGGGKVLIPAFALGRAQELC-----ILLDDYWERM----------NLRVPIYFSAGL 47
K +A GKV IPAFALGR QEL + D W + VP + + L
Sbjct: 268 KSLADKGKVFIPAFALGRTQELLYDLDRLFSDKKWNKHFPELHKKGQGKAPVPFFVDSPL 327
Query: 48 TIQANMYYKMLISWTSQKVKETY----NAFDFKN---VHNF--DRSLIDAPGPCVLFATP 98
++ Y L + ++ K + FDFKN V +F + ++D PGP V+ A
Sbjct: 328 ALEITETYNELSEFWDEEAKSLLTDHDHPFDFKNLFSVKHFREHQQIMDYPGPAVIIAGS 387
Query: 99 GMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS---GNPTIELEGTKIDVRCQ 155
GM TGG ++ + N I GY GT G ++ + + L+ K+ V+ +
Sbjct: 388 GMCTGGRIVDHLLTGLAEKENDILFIGYQGRGTPGRDILQYADNHGYVRLKQQKVTVKAK 447
Query: 156 IHQL-AFSPHTDGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSE 202
+H+L +S H D +G++D V + P + LVHGEK + L ++ ++
Sbjct: 448 VHKLTGYSAHADQQGLLDWVAAMPAKPGAIRLVHGEKAAQSELTGKLSAQ 497
>gi|152993758|ref|YP_001359479.1| RNA-metabolising metallo-beta-lactamase [Sulfurovum sp. NBC37-1]
gi|151425619|dbj|BAF73122.1| RNA-metabolising metallo-beta-lactamase [Sulfurovum sp. NBC37-1]
Length = 466
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 12/218 (5%)
Query: 3 KCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYK---ML 58
K + G V+IP+FA+ R QEL +L R L + I+ + + +A Y+ L
Sbjct: 238 KTMKDWGNVIIPSFAVERTQELLCILKQMHRRKELPQCKIFVDSPMATRATEVYRNYSEL 297
Query: 59 ISWTSQKVK-ETYNAFDFKN-VHNFD----RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+S Q++K E FDF+N V+ D +++ D ++ A GM GG L FK+
Sbjct: 298 LSSECQEIKKEDGTIFDFENLVYTLDVEASKAINDMDTRAIIIAGSGMCNGGRILHHFKN 357
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIM 171
++ N + GY GT+G ++ G +++ I ++ IH + FS H D KGI+
Sbjct: 358 RLWNKKNAVIFVGYQAVGTLGRHIVDGARWVKIYNEDILIKASIHTINGFSAHADQKGIV 417
Query: 172 DLVKFLSP-QHVILVHGEKPKMATLKERIQSELGIKCY 208
+ + + + LVHGE+ K L+ +++EL K +
Sbjct: 418 KWISQIEDLKRIYLVHGEEDKEVILRSVLENELHAKAH 455
>gi|377820775|ref|YP_004977146.1| beta-lactamase [Burkholderia sp. YI23]
gi|357935610|gb|AET89169.1| beta-lactamase domain protein [Burkholderia sp. YI23]
Length = 451
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 7/215 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS---WTS 63
GG V+IP FA+GRAQ L + E + RVP++ + + Y S T
Sbjct: 234 GGVVVIPCFAVGRAQTLLHFIASLREAGRIARVPVFLDSPMATSVTQTYVRHASEHRLTR 293
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
+++ + +++ GP V+ A GM TGG L K +AP + N I L
Sbjct: 294 SQLEAIEHVATIVRTVEESKAVCARKGPMVVIAGSGMATGGRVLHHLKVFAPDDRNTILL 353
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL--SPQ 180
GY AGT G L + P I++ G + VR ++ L + S H D ++D ++ + +P
Sbjct: 354 VGYQAAGTRGAALAAHAPAIKIFGEYVPVRARVASLDSMSAHADYAELLDWLRGMPEAPS 413
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
H + HGE L+ RI+ L C P +S
Sbjct: 414 HTFVTHGEPAAADALRRRIEETLHWNCSVPVYKQS 448
>gi|355571913|ref|ZP_09043121.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
gi|354825009|gb|EHF09244.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
Length = 629
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 15/229 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLIS 60
V+ + GGKV+IPAFA+GR+QE+ + L++ R + + G+ +A +
Sbjct: 398 VNNTIRRGGKVIIPAFAVGRSQEVMLALEEGMRRQKIPTVKIYLDGMIREATAIHTTYPE 457
Query: 61 W-----TSQKVKETYNAFD---FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
+ +Q KE +N F F V + + R + PCV+ T GML GG +E
Sbjct: 458 YLNSELRTQIFKEDHNPFLADCFIPVDSSELREKVIRGDPCVIITTSGMLNGGPVMEYLS 517
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSG--NPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
+ A E N + GY GT+G ++ G I +GT I + +I + FS H+D K
Sbjct: 518 NLASDEKNALVFVGYQAEGTLGRRIQKGWREVPIGRKGT-IVINLEIVTIDGFSGHSDRK 576
Query: 169 GIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNES 215
+M + + P+ + VHG++ L I I+ + P N E+
Sbjct: 577 QLMSFIAHVQPRPEKIFTVHGDENNTIDLASSIYKRYHIETHSPMNLET 625
>gi|226357274|ref|YP_002787014.1| beta-lactamase [Deinococcus deserti VCD115]
gi|226319264|gb|ACO47260.1| putative beta-lactamase [Deinococcus deserti VCD115]
Length = 489
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYY----KML 58
+ GGK+LIP+FA+ RAQ + L D R + +P++ + + ++A Y L
Sbjct: 238 SIRAGGKILIPSFAIERAQVILYTLKDLMNRGEVPHIPVFMDSPMAMRATYEYFEFGDEL 297
Query: 59 ISWTSQKVKETYNAFDFKNVHNFDRS-----LIDAPGPCVLFATPGMLTGGFSLEVFKH- 112
I+ + ++ + F +H + S L GP ++ A GM+TGG KH
Sbjct: 298 ITPVREALQSGEDPFRPSTLHVVNTSAESQRLNRYDGPAIIMAGNGMMTGGRIQHHLKHH 357
Query: 113 -WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGI 170
W PS +I Y ++G +++ G T+ L G ++ VR Q+H + FS H D +
Sbjct: 358 LWKPSTSLIIV--SYQSPSSLGGRIVEGAETVRLMGEEVAVRAQVHTIGGFSAHADRDDL 415
Query: 171 MDLVKFLSPQHVILVHGEKPKMATL 195
+ + HV LVHGE M++
Sbjct: 416 LAFLDTAGKPHVWLVHGETSVMSSF 440
>gi|119719226|ref|YP_919721.1| beta-lactamase domain-containing protein [Thermofilum pendens Hrk
5]
gi|119524346|gb|ABL77718.1| beta-lactamase domain protein [Thermofilum pendens Hrk 5]
Length = 639
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V + + G VLIP A+GRAQE+ + L D ++ + RVPI F G+ + + +
Sbjct: 399 VLETIERKGVVLIPVLAVGRAQEVLLALLDLMKKGAVPRVPI-FIEGMIDEVSAVHMTFP 457
Query: 60 SWTSQKVKETY----NAFDFKNVHNFD---RSLIDAPGPCVLFATPGMLTGGFSLEVFKH 112
+ S ++E N F +N+H R I P ++ AT GMLTGG L+ +
Sbjct: 458 EYLSATIREMIYRDENPFTSENIHVIRGEAREDITEKKPSIILATSGMLTGGPVLDYLRI 517
Query: 113 WAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGTKI--DVRCQIHQL-AFSPHTD 166
A E + + Y + GT+G K++ G + G I D++ +++++ FS H+D
Sbjct: 518 LADDENSSLVFVSYQVEGTLGRKILQGLRKLSFTDPSGKVINKDLKMRVYRVEGFSGHSD 577
Query: 167 GKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSE-------LGIKCYDPANNESMC 217
+ + ++ + SP+ VIL HGE K+ + + SE L + P N ES+
Sbjct: 578 RRQLEAFIRRMEPSPRTVILNHGEAGKIEEFRRYLSSEWFKKKTGLNLDVLTPKNAESIR 637
Query: 218 I 218
I
Sbjct: 638 I 638
>gi|404492232|ref|YP_006716338.1| zinc-dependent endoribonuclease [Pelobacter carbinolicus DSM 2380]
gi|77544339|gb|ABA87901.1| zinc-dependent endoribonuclease [Pelobacter carbinolicus DSM 2380]
Length = 469
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
V++ V GG +LIPAFA+GR Q+L L + +PI+ + L + +++ +
Sbjct: 236 VNETVTRGGSLLIPAFAVGRTQQLVYALHKLHNAGRIPDLPIFVDSPLATRVTDIFRLHL 295
Query: 60 SWTSQKVKETYNAFDFKNVHNFDR-----------SLIDAPGPCVLFATPGMLTGGFSLE 108
+++E + KN F R +L P ++ + GML GG L
Sbjct: 296 EDFDAEIREFLLTDEDKNPFGFGRLQYTKTVEESKALNSLKIPAIIISASGMLEGGRILH 355
Query: 109 VFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDG 167
++ + N I L G+ T+G ++ P++ + G + V+ + FS H D
Sbjct: 356 HLRNRIGNSRNTILLTGWQAPNTLGRYIVEKKPSVGIYGEEYQVKANVEIFTGFSGHADR 415
Query: 168 KGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGI 205
G+++ V+ + P+H +VHGE+ ++L++ +Q+EL +
Sbjct: 416 DGLLEFVRVMEKKPEHTFIVHGEEDASSSLRQALQTELAL 455
>gi|402301584|ref|ZP_10820890.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
gi|401723328|gb|EJS96832.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
Length = 907
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 13/212 (6%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWER-MNLRVPIYFSAGLTIQANMYYK--- 56
V +A GG LIPAFALGRAQE+ ++L DY ++ + PIY +T + +Y K
Sbjct: 218 VANIIANGGFALIPAFALGRAQEVLLVLQDYMDKGLIPEFPIYVDGLVTPISRIYKKYPH 277
Query: 57 MLISWTSQKVKETYNAF----DFKNV-HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFK 111
L + ++K +AF K V + +R + P + A+ GML GG S +
Sbjct: 278 FLKGPVAYRIKNNGDAFLTDGRCKAVGSSKEREEVLRGKPGCIVASSGMLIGGASSWYAE 337
Query: 112 HWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI----ELEGTKIDVRCQIHQLAFSPHTDG 167
+E N I + GY + G KL+ + EL GT +V+C I + S H D
Sbjct: 338 RLVSNEKNAIFITGYQDEESPGRKLLQVAEGVENQLELNGTSHEVKCHIGKYGLSAHADA 397
Query: 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERI 199
+ ++ L+P H +LVHG+ L +I
Sbjct: 398 NEMKRFIEKLNPTHTLLVHGDDDARNQLGAQI 429
>gi|421619120|ref|ZP_16060084.1| beta-lactamase domain-containing protein [Pseudomonas stutzeri
KOS6]
gi|409778916|gb|EKN58596.1| beta-lactamase domain-containing protein [Pseudomonas stutzeri
KOS6]
Length = 452
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 21/232 (9%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYW---ERMNLR-VPIYFSAGLTIQANMYYK 56
+ + GG V+IPAFA+GRAQ L D W +R LR VP+Y + + A +
Sbjct: 228 IERTTRRGGTVVIPAFAVGRAQSLIY---DLWLLRQRGRLRNVPVYLDSPMATNATV--- 281
Query: 57 MLISWTSQKVKETYNAFD-----FKNVHNFDRS--LIDAPGPCVLFATPGMLTGGFSLEV 109
L+ S K T + F+ K V + + S L P V+ + GM TGG L
Sbjct: 282 -LLHRHSDDHKLTQHDFEAAFSEVKYVRDVEESKALSANRYPKVIISASGMATGGRVLHH 340
Query: 110 FKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGK 168
+ + N + G+ AGT G KL+ G +++ G + + ++ +L S H D
Sbjct: 341 IEAFGGIHQNTLLFSGFQAAGTRGRKLLEGAREVKIHGRWMPINAEVAELPMLSAHADSD 400
Query: 169 GIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218
+M + + P+ V +VHGE L+ERIQ EL P N+ +
Sbjct: 401 ELMRWLGGFTRAPEGVFIVHGESNASEALRERIQRELKWHASVPMQNQEFAL 452
>gi|452991890|emb|CCQ96731.1| RNA-metabolising metallo-beta-lactamase [Clostridium ultunense Esp]
Length = 543
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN-----LRVPIYFSAGLTIQANMYY 55
++K V GG V+IP+FA+GR QEL L+ Y+E +++PIY + + + A +
Sbjct: 233 INKTVIRGGTVIIPSFAVGRTQELIYKLNKYYEYNEEIEEYMKIPIYVDSPMAVMATEAF 292
Query: 56 KMLISWTSQKVK----ETYNAFDFKNVHNF-----DRSLIDAPGPCVLFATPGMLTGGFS 106
+ S + K + N F F N+ +L P V+ ++ GM T G
Sbjct: 293 QANSSSFDDEAKGLILKGDNPFQFPNLRYVKDQKESMALNKYKFPKVIISSSGMATAGRI 352
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHT 165
KH E N + GY GT+G +++G +++ G ++ V+ +I+ L FS H
Sbjct: 353 RHHLKHNLWDEKNSLVFVGYQAEGTLGRIILNGAKRVKILGEEVAVKAEIYDLEGFSGHA 412
Query: 166 DGKGIMDLVKFL--SPQHVILVHGEKPKMATLKERIQSELGIKCYDP 210
D ++D ++ L P+ + +VHGE+ TL ++ E I+ P
Sbjct: 413 DQIMLIDWIRKLKKKPERIFIVHGEEKSSNTLASLVKEEFSIETIIP 459
>gi|384440508|ref|YP_005655232.1| Ribonuclease [Thermus sp. CCB_US3_UF1]
gi|359291641|gb|AEV17158.1| Ribonuclease [Thermus sp. CCB_US3_UF1]
Length = 431
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 15/209 (7%)
Query: 4 CVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTS 63
+A GGK IP FA+ RAQE+ +L + R+ R PIY + + + Y L+ + S
Sbjct: 211 TLAQGGKAFIPTFAVERAQEILYVLYQHGHRLP-RAPIYLDSPMAERVLELYPHLVRYFS 269
Query: 64 QKVK----ETYNAFDFKNVH-----NFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWA 114
++V+ + N F + R+L GP V+ A GMLTGG L KH
Sbjct: 270 EEVQLYFLQGKNPFRPPGLQVVESAEVSRALTREEGPMVVLAGSGMLTGGRILHHLKHGL 329
Query: 115 PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDL 173
N + GY G +G ++++ + L G ++ +R +H L FS H G +L
Sbjct: 330 ADPKNALIFVGYQPRGGLGAEIIARPERVRLLGQEVPLRASVHTLGGFSGHA---GQDEL 386
Query: 174 VKFLSPQ-HVILVHGEKPKMATLKERIQS 201
+ +L Q V+LVHGE+ K+ L + S
Sbjct: 387 LAWLEGQPRVVLVHGEEEKLQGLGALLAS 415
>gi|307611100|emb|CBX00742.1| hypothetical protein LPW_24461 [Legionella pneumophila 130b]
Length = 472
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 7/210 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQAN---MYYKMLISWTS 63
GG VL+PAFA+GRAQ + L ++ + VP+Y + + I A + + ++
Sbjct: 254 GGTVLVPAFAVGRAQTMLYYLYILKQKKLIPDVPVYLDSPMAIDATELLLKHHNEHRLSA 313
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
++ + + + N ++ ++ + GM+TGG L K +AP + I L
Sbjct: 314 EECRAVCQIATYVHTPNESMAVDWERESKIIISASGMMTGGRVLHHLKVYAPDPASTILL 373
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHTDGKGIMDLVKFL--SPQ 180
G+ AGT G K+++ P++++ G VR Q+ L S H D + I+ +K +P+
Sbjct: 374 TGFQAAGTRGEKMLNHEPSVKIHGDDYPVRAQVAMLTNASAHADYEEILVWLKHFEKAPK 433
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDP 210
V + HGE LKE I++ELG C P
Sbjct: 434 EVFITHGEPQAALGLKEHIEAELGWNCKIP 463
>gi|385811724|ref|YP_005848120.1| RNA-processing exonuclease [Ignavibacterium album JCM 16511]
gi|383803772|gb|AFH50852.1| Putative RNA-processing exonuclease [Ignavibacterium album JCM
16511]
Length = 466
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 23/218 (10%)
Query: 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLI 59
+++ V GK++IPAFA+GR Q + +L + + + +PIY + L + A ++
Sbjct: 234 INQIVNDNGKIIIPAFAVGRTQTIVYVLHKLFNQNRIPEIPIYVDSPLAVDATNVFR--- 290
Query: 60 SWTSQKVKETYNAF--DFKNVHNFDR-----------SLIDAPGPCVLFATPGMLTGGFS 106
S +ETY F + ++ F R L D PGP ++ + GM GG
Sbjct: 291 SHPECLDRETYRVFLQNGEDPFGFSRLKYIKKVEESKELNDKPGPMIIISASGMAEGGRI 350
Query: 107 LEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLA-FSPHT 165
L + + NLI GY T+ K+M G + + G + +VR ++ + FS H
Sbjct: 351 LHHLANNIENPKNLILFVGYAAEQTLARKIMDGEKRVNIFGEEYEVRAKVKTMDYFSAHA 410
Query: 166 DGKGIMDLVKFLSP----QHVILVHGEKPKMATLKERI 199
D ++D ++ L+P +++ LVHGE+ + L++++
Sbjct: 411 DQNELLDYLR-LNPTKKLRNIFLVHGEEDQAIPLRQKL 447
>gi|323529290|ref|YP_004231442.1| RNA-metabolising metallo-beta-lactamase [Burkholderia sp. CCGE1001]
gi|323386292|gb|ADX58382.1| RNA-metabolising metallo-beta-lactamase [Burkholderia sp. CCGE1001]
Length = 482
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 7/220 (3%)
Query: 8 GGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLIS---WTS 63
GG V+IP FA+GRAQ + + + VP++ + + Y+ + +S
Sbjct: 234 GGVVVIPCFAVGRAQTILHYIAQLKATGRMANVPVFLDSPMATSVTQLYRHHVGEHRVSS 293
Query: 64 QKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITL 123
+ +A + ++++ GP V+ A GM TGG + K +AP N I L
Sbjct: 294 TEANAISHAAQMVRTVDESKAILGRHGPMVIIAGSGMATGGRVVHHLKAFAPDHRNTIAL 353
Query: 124 PGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPHTDGKGIMDLVKFL--SPQ 180
GY AGT G L +G P I++ G + VR + L + S H D ++ + L +PQ
Sbjct: 354 VGYQAAGTRGAALAAGAPEIKIHGEYVRVRATVASLSSLSAHADYGELLAWLHSLPEAPQ 413
Query: 181 HVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPS 220
+ HGE ++ I+ L C P +++ +P
Sbjct: 414 RTFVTHGEPAAADAMRRHIEETLHWPCEVPEYLQTVELPG 453
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,800,283,389
Number of Sequences: 23463169
Number of extensions: 283918242
Number of successful extensions: 539868
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 1109
Number of HSP's that attempted gapping in prelim test: 533707
Number of HSP's gapped (non-prelim): 3135
length of query: 423
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 278
effective length of database: 8,957,035,862
effective search space: 2490055969636
effective search space used: 2490055969636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)