Query 043917
Match_columns 423
No_of_seqs 239 out of 1187
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1136 Predicted cleavage and 100.0 2.2E-67 4.7E-72 517.3 21.1 273 1-290 225-500 (501)
2 KOG1137 mRNA cleavage and poly 100.0 4.5E-53 9.8E-58 435.6 22.7 268 1-301 228-507 (668)
3 TIGR03675 arCOG00543 arCOG0054 100.0 3.3E-50 7.1E-55 433.6 24.9 217 1-218 395-629 (630)
4 COG1782 Predicted metal-depend 100.0 1.8E-50 3.9E-55 413.9 18.0 217 1-218 401-636 (637)
5 COG1236 YSH1 Predicted exonucl 100.0 1.4E-37 3E-42 322.8 18.5 214 1-218 209-427 (427)
6 KOG1135 mRNA cleavage and poly 100.0 6.3E-29 1.4E-33 262.3 20.3 237 1-237 219-623 (764)
7 PF10996 Beta-Casp: Beta-Casp 99.9 5.5E-28 1.2E-32 209.2 9.0 116 21-136 1-126 (126)
8 TIGR00649 MG423 conserved hypo 99.7 2.1E-17 4.6E-22 171.2 14.5 192 3-220 212-419 (422)
9 KOG1138 Predicted cleavage and 99.6 9.1E-15 2E-19 151.4 16.3 252 1-289 286-556 (653)
10 PF07521 RMMBL: RNA-metabolisi 99.4 3.3E-13 7.2E-18 97.7 4.5 43 148-190 1-43 (43)
11 COG0595 mRNA degradation ribon 96.7 0.028 6E-07 61.3 13.6 191 6-222 224-431 (555)
12 PF11718 CPSF73-100_C: Pre-mRN 96.2 0.034 7.4E-07 53.6 10.0 104 270-416 2-111 (216)
13 PF07522 DRMBL: DNA repair met 96.1 0.033 7.2E-07 47.7 8.4 90 89-183 12-103 (110)
14 PRK00685 metal-dependent hydro 89.8 0.77 1.7E-05 43.2 6.1 56 162-218 168-228 (228)
15 PRK00055 ribonuclease Z; Revie 82.6 3.2 7E-05 39.7 6.3 59 161-220 207-268 (270)
16 KOG2862 Alanine-glyoxylate ami 65.6 9.9 0.00022 39.2 4.9 84 91-190 69-154 (385)
17 PRK11244 phnP carbon-phosphoru 61.9 13 0.00028 35.8 4.8 55 162-218 196-250 (250)
18 PF12706 Lactamase_B_2: Beta-l 57.7 10 0.00022 34.1 3.1 25 162-186 169-193 (194)
19 TIGR03307 PhnP phosphonate met 56.3 15 0.00033 35.0 4.2 29 162-190 186-214 (238)
20 TIGR02651 RNase_Z ribonuclease 50.2 39 0.00085 33.1 6.1 56 162-218 242-299 (299)
21 COG4029 Uncharacterized protei 47.6 98 0.0021 27.9 7.4 54 160-213 12-72 (142)
22 COG1647 Esterase/lipase [Gener 46.8 23 0.00051 34.9 3.8 32 180-212 16-50 (243)
23 PRK02113 putative hydrolase; P 46.2 45 0.00097 31.9 5.7 55 161-217 197-251 (252)
24 TIGR02649 true_RNase_BN ribonu 46.0 47 0.001 33.0 6.0 56 162-218 244-303 (303)
25 PF02670 DXP_reductoisom: 1-de 43.1 62 0.0013 28.9 5.7 41 158-200 27-67 (129)
26 KOG1361 Predicted hydrolase in 37.3 1.6E+02 0.0035 32.0 8.6 38 153-190 376-413 (481)
27 PF01041 DegT_DnrJ_EryC1: DegT 36.2 1E+02 0.0022 31.3 6.8 96 90-201 40-138 (363)
28 PF06057 VirJ: Bacterial virul 31.4 83 0.0018 30.1 4.8 102 106-224 58-174 (192)
29 PF13788 DUF4180: Domain of un 30.7 84 0.0018 27.6 4.4 45 151-195 67-113 (113)
30 PF10137 TIR-like: Predicted n 28.7 63 0.0014 28.7 3.3 27 181-208 1-28 (125)
31 COG1235 PhnP Metal-dependent h 26.9 54 0.0012 32.1 2.9 34 161-194 209-242 (269)
32 PF11718 CPSF73-100_C: Pre-mRN 26.7 2.2E+02 0.0047 27.5 6.9 65 334-418 140-209 (216)
33 COG0399 WecE Predicted pyridox 25.1 1.2E+02 0.0026 31.9 5.2 89 105-206 60-151 (374)
34 PRK15080 ethanolamine utilizat 24.9 1.1E+02 0.0024 30.1 4.6 34 178-212 221-254 (267)
35 PF12695 Abhydrolase_5: Alpha/ 21.9 1E+02 0.0023 25.6 3.4 29 182-211 2-33 (145)
36 PRK14701 reverse gyrase; Provi 21.9 1.5E+03 0.032 28.8 14.1 35 167-201 319-355 (1638)
37 COG2185 Sbm Methylmalonyl-CoA 21.0 2.9E+02 0.0062 25.3 6.1 108 88-211 10-123 (143)
38 COG1234 ElaC Metal-dependent h 20.4 2.3E+02 0.0049 28.5 5.9 56 164-219 234-292 (292)
39 COG0513 SrmB Superfamily II DN 20.3 4.1E+02 0.0089 28.8 8.3 52 154-206 245-299 (513)
No 1
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.2e-67 Score=517.29 Aligned_cols=273 Identities=60% Similarity=1.075 Sum_probs=255.5
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhc---CCCCCCc
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDFKN 77 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~---npF~f~~ 77 (423)
||+|+++||+||||+||||||||||++|+.||+++++++|||+.+|++.+++.||+.++.|.++.+++.+ |+|+|+|
T Consensus 225 VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkh 304 (501)
T KOG1136|consen 225 VHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKH 304 (501)
T ss_pred HHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhccCCcccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999998876 9999999
Q ss_pred ccccccccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeeecCeEEEEeeeEE
Q 043917 78 VHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIH 157 (423)
Q Consensus 78 v~~~~~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~ 157 (423)
++.+++.....+||+|+|||||||.+|+|+.+|++||+||.|+|+++|||+.||+|.++++|+.++++.|+.++|||.|+
T Consensus 305 iKpfd~~~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~ 384 (501)
T KOG1136|consen 305 IKPFDRSYIEAPGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVE 384 (501)
T ss_pred CChhhhhhhcCCCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCCccEEEEeeeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEecCcceEEecccHHHHhccC
Q 043917 158 QLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCM 237 (423)
Q Consensus 158 ~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l~~~~~~~v~~s~~l~~~~~ 237 (423)
+++||||||.++++++++++.|++|+|||||..+|..|++++++++++++|+|+|||++.|++.+.+++++++.++.++.
T Consensus 385 ~maFSaHaDAkGIm~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip~~mPaNGetv~i~s~~~i~~ri~~~~~~~~~ 464 (501)
T KOG1136|consen 385 YMAFSAHADAKGIMQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFDIPTFMPANGETVVISSTTYIKARIPDEFLVSLS 464 (501)
T ss_pred EeeeccccCchhHHHHHHhcCcceEEEEeccchhhHHHHHhhHhhcCCceeeCCCCCEEEecccceeeecCcHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccccCccccccCCCcccCCCCCCCCCCCceeeeEEEecCCCCceeeeh
Q 043917 238 NPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQ 290 (423)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv~~~~~~~~l~~~ 290 (423)
.+++++- . .++...+.+...|++|.+++++.++++.
T Consensus 465 k~~~k~s---~--------------~qlr~~~~r~~~g~~v~~kd~~~~i~~~ 500 (501)
T KOG1136|consen 465 KPNLKFS---S--------------TQLRVTDHRTADGVLVIEKDKKAKIVHQ 500 (501)
T ss_pred Ccccccc---c--------------ccCCCCcccccCceEEEEecchhhhccC
Confidence 8887431 0 1222344566667777778899888875
No 2
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=4.5e-53 Score=435.57 Aligned_cols=268 Identities=32% Similarity=0.605 Sum_probs=233.8
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcC--CCccEEEecchHHHHHHHHHHhHHhhhHHHHhhc---CCCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDF 75 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~--~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~---npF~f 75 (423)
||.++.+||+||||+||+|||||||++|++||..+. .++|||+.|.+|++|+.+|++|...|+++|++.+ |||.|
T Consensus 228 Ih~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfif 307 (668)
T KOG1137|consen 228 IHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIF 307 (668)
T ss_pred HHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEe
Confidence 688999999999999999999999999999998764 3899999999999999999999999999999986 89999
Q ss_pred Cccccccc-ccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCee-eecCeEEEEe
Q 043917 76 KNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTI-ELEGTKIDVR 153 (423)
Q Consensus 76 ~~v~~~~~-~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I-~i~g~~i~Vr 153 (423)
+++..+.. .-.++.||||++|+||||+.|.|+++|++||+|++|+++++|||.+||+++.++..+++| .++|+++|.|
T Consensus 308 k~vs~L~~~D~f~D~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~ 387 (668)
T KOG1137|consen 308 KHVSILRTGDWFDDEGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLR 387 (668)
T ss_pred eccccccccccccccCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCccccc
Confidence 99986652 335578999999999999999999999999999999999999999999999999987774 5599999999
Q ss_pred eeEEEEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHh-----CCeeecCCCCCEEEecCcceEEecc
Q 043917 154 CQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSEL-----GIKCYDPANNESMCIPSTHYVKAGA 228 (423)
Q Consensus 154 ~~V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~-----g~~v~~P~~Ge~v~l~~~~~~~v~~ 228 (423)
|+|++++||||.|+.+..+||+.+.|+++||||||.+.|.+|+..|+.++ .++++.|.|+|.+++....
T Consensus 388 m~V~~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~------ 461 (668)
T KOG1137|consen 388 MQVEYISFAAHVDYLQNSEFIADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPG------ 461 (668)
T ss_pred ceEEEEEeeechhhhhhHHHHHHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCc------
Confidence 99999999999999999999999999999999999999999999999876 3789999999999998865
Q ss_pred cHHHHhccCCCcccccccCccccccCCCcccCCCCCCCCCCCceeeeEEEecCCCCceeeehhHHHHHhCCce
Q 043917 229 SDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKR 301 (423)
Q Consensus 229 s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv~~~~~~~~l~~~~~~~~~l~~~~ 301 (423)
+++++.. +. ....++ +..++|+||. +++++.+++++|+...-.++-
T Consensus 462 -eklak~~--------G~----------------~a~~p~-~~~~sgiLv~-~~~~~~ils~edL~~ys~l~~ 507 (668)
T KOG1137|consen 462 -EKLAKTT--------GS----------------LAEVPK-EDRVSGILVS-YGFSYAILSPEDLILYSDLKT 507 (668)
T ss_pred -chhhhhh--------hc----------------cccCCc-cceEEEEEEe-cCCceeeccHHHhhhhhhhee
Confidence 3332110 00 000011 2688999997 679999999999965544443
No 3
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=3.3e-50 Score=433.61 Aligned_cols=217 Identities=31% Similarity=0.576 Sum_probs=199.6
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhh-----cCCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKET-----YNAFD 74 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~-----~npF~ 74 (423)
|.+|+++||+||||+||+||+||||++|+++|++..+ ++|||+|| |+.+++++|+.|.+|+++.+++. .|||.
T Consensus 395 I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~ 473 (630)
T TIGR03675 395 VNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFL 473 (630)
T ss_pred HHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCccc
Confidence 4688999999999999999999999999999987655 89999995 99999999999999999887653 29999
Q ss_pred CCcccccc-----cccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeeecC--
Q 043917 75 FKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEG-- 147 (423)
Q Consensus 75 f~~v~~~~-----~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g-- 147 (423)
+++++.++ +.++..++|||||||||||++|+|++||++|++||+|+|+|||||++||+||+|++|.+.+.+.|
T Consensus 474 ~~~~~~v~~~~~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~ 553 (630)
T TIGR03675 474 SEIFVRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEG 553 (630)
T ss_pred CCceEEeCCHHHHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcCCcEEEecCCC
Confidence 88876443 23456789999999999999999999999999999999999999999999999999998899987
Q ss_pred --eEEEEeeeEEEEe-cCCCCChHHHHHHHHhcCC--CEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 148 --TKIDVRCQIHQLA-FSPHTDGKGIMDLVKFLSP--QHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 148 --~~i~Vr~~V~~i~-fSaHAD~~~Ll~lI~~l~P--~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
+.++|+|+|++++ ||||||+++|++|++.++| ++|||||||++++.+|++.|.+++++++++|++||+++|
T Consensus 554 ~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 554 KTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred CceEEEEEEEEEEeCCccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 8999999999995 9999999999999999865 999999999999999999999999999999999999987
No 4
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=1.8e-50 Score=413.88 Aligned_cols=217 Identities=32% Similarity=0.618 Sum_probs=197.2
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhhc-----CCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKETY-----NAFD 74 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~-----npF~ 74 (423)
|++|+++||+||||+||+||+||+|+.|+++++...+ .+|||+| ||...+++++-.|++|++.++++.. |||.
T Consensus 401 i~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlD-GMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~ 479 (637)
T COG1782 401 INDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERIFHEGENPFL 479 (637)
T ss_pred HHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeee-eeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCcc
Confidence 5789999999999999999999999999999998776 5999999 8999999999999999999998752 9997
Q ss_pred CCcccccc-----cccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeee---c
Q 043917 75 FKNVHNFD-----RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---E 146 (423)
Q Consensus 75 f~~v~~~~-----~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i---~ 146 (423)
-...+.++ +..+.++.||||+||||||+||++++||++|++||+|+++|+|||++||+||+|.+|.++|.+ +
T Consensus 480 se~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~ 559 (637)
T COG1782 480 SEIFKRVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGED 559 (637)
T ss_pred ccceeecCChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcCceecccccCC
Confidence 44443332 346778899999999999999999999999999999999999999999999999999988765 2
Q ss_pred C--eEEEEeeeEEEE-ecCCCCChHHHHHHHHhcC--CCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 147 G--TKIDVRCQIHQL-AFSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 147 g--~~i~Vr~~V~~i-~fSaHAD~~~Ll~lI~~l~--P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
| +.+.++++|+.+ +||+|+|+++|+++++.++ |++|+++|||+.++.+|+..+...+++..++|.|.|++.+
T Consensus 560 G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 560 GKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred CCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 3 468999999999 7999999999999999885 5799999999999999999999999999999999999976
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-37 Score=322.76 Aligned_cols=214 Identities=37% Similarity=0.582 Sum_probs=189.8
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhc-CCCCCCccc
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY-NAFDFKNVH 79 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~-npF~f~~v~ 79 (423)
|.+++.+||+||||+||+||+||||++|+.+|.+. ++|||+||++++.++.|++.+.+|+...+.... +. |+.++
T Consensus 209 v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 284 (427)
T COG1236 209 VKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR--FRFVE 284 (427)
T ss_pred HHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh--ccccc
Confidence 46789999999999999999999999999999876 899999999999999999999999988776543 33 33343
Q ss_pred ccc--cccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeeecCeEEEEeeeEE
Q 043917 80 NFD--RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIH 157 (423)
Q Consensus 80 ~~~--~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~ 157 (423)
... .......+|+||+|++||+++|++++++++|+++++|+++|+|||++||+|+.+++++..+.+.+.++.++++|+
T Consensus 285 ~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve 364 (427)
T COG1236 285 SRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVE 364 (427)
T ss_pred chhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCcEEeecceeecccceEE
Confidence 332 234567999999999999999999999999999999999999999999999999998878899999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHH-hCC-eeecCCCCCEEEe
Q 043917 158 QLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSE-LGI-KCYDPANNESMCI 218 (423)
Q Consensus 158 ~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~-~g~-~v~~P~~Ge~v~l 218 (423)
.++||+|||+.+|++||+.+.|++|+++||++..+..+++++.++ ++. .+++|++|+.+.+
T Consensus 365 ~~~~s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~ 427 (427)
T COG1236 365 ELDFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYEL 427 (427)
T ss_pred EeccccccCcHHHHHHHhcCCCceEEEEeCCchhhhHHHHHHHHhhCCcceeecCCCccccCC
Confidence 999999999999999999999999999999999887777766665 466 6999999987653
No 6
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.96 E-value=6.3e-29 Score=262.27 Aligned_cols=237 Identities=31% Similarity=0.543 Sum_probs=207.0
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhc--CC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhhc-----CC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERM--NL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKETY-----NA 72 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~--~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~-----np 72 (423)
|.++|+.||+|||||.+.||..||+.+|+++|.+. ++ .+||++-|+.+.+..+|.+.+.+||++++.+.| ||
T Consensus 219 v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~Np 298 (764)
T KOG1135|consen 219 VLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNP 298 (764)
T ss_pred HHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCc
Confidence 45789999999999999999999999999999764 45 599999999999999999999999999998776 99
Q ss_pred CCCCccccc---ccccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCC---------
Q 043917 73 FDFKNVHNF---DRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGN--------- 140 (423)
Q Consensus 73 F~f~~v~~~---~~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~--------- 140 (423)
|.|+|+... .+-....+||+||+||...|+.|+|+++|-+|+.||+|+|+||--..+||+++++++-+
T Consensus 299 Fefrhi~l~~~~~dlsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~ 378 (764)
T KOG1135|consen 299 FEFRHITLCHSLQDLSRVPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELK 378 (764)
T ss_pred ceeeeeeeecCHHHHhcCCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeee
Confidence 999998532 22122357799999999999999999999999999999999999999999999886310
Q ss_pred --------------------------------------------------------------------------------
Q 043917 141 -------------------------------------------------------------------------------- 140 (423)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (423)
T Consensus 379 ~r~rv~LeGeEl~ey~~~e~~r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d~~~~~~~~Hd~~~~~~~~~~~~f~~~~~~~ 458 (764)
T KOG1135|consen 379 VRKRVKLEGEELLEYLEGERLRNEDALRLNVNRDVEIDSSHESDDSDDEDMENDTEVRHDIMSKAGKSTKDGFFKSAKSK 458 (764)
T ss_pred eecccCCchHHHHHHHhhhhhhhhhhHHhhccCCccccccccCCcccccccccccccchhhhhccCCccccccccccccc
Confidence
Q ss_pred -----------------------------------------C-----------------------eeeecC-eEEEEeee
Q 043917 141 -----------------------------------------P-----------------------TIELEG-TKIDVRCQ 155 (423)
Q Consensus 141 -----------------------------------------~-----------------------~I~i~g-~~i~Vr~~ 155 (423)
+ +-.+.+ ..+.|+|+
T Consensus 459 ~~MFPy~e~r~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~ 538 (764)
T KOG1135|consen 459 HPMFPYIEERRKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCR 538 (764)
T ss_pred CcccCCcHHhccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEE
Confidence 0 001122 37899999
Q ss_pred EEEEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhC--CeeecCCCCCEEEecCcceE-EecccHHH
Q 043917 156 IHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG--IKCYDPANNESMCIPSTHYV-KAGASDAF 232 (423)
Q Consensus 156 V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g--~~v~~P~~Ge~v~l~~~~~~-~v~~s~~l 232 (423)
|+.++|-+-+|.+.+..+|.+++|+++|||||..+..++|+..+...-+ ..||+|+.||.|+++++..+ +|++++.+
T Consensus 539 v~~iDyeGisDgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l 618 (764)
T KOG1135|consen 539 VEKIDYEGISDGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGL 618 (764)
T ss_pred EEEeeeeccccchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhh
Confidence 9999999999999999999999999999999999999999998887544 78999999999999999996 99999999
Q ss_pred HhccC
Q 043917 233 IRSCM 237 (423)
Q Consensus 233 ~~~~~ 237 (423)
++++.
T Consensus 619 ~~~l~ 623 (764)
T KOG1135|consen 619 LSNLQ 623 (764)
T ss_pred hhhhe
Confidence 97664
No 7
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.95 E-value=5.5e-28 Score=209.16 Aligned_cols=116 Identities=38% Similarity=0.695 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhcCC--CccEEEecchHHHHHHHHHHhHHhhhHHHHhhc---C--CC-CCCccccccc--ccccCCC
Q 043917 21 AQELCILLDDYWERMNL--RVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---N--AF-DFKNVHNFDR--SLIDAPG 90 (423)
Q Consensus 21 aQELL~lL~~~w~~~~~--~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~---n--pF-~f~~v~~~~~--~~~~~~~ 90 (423)
|||||++|+++|++..+ ++|||++||+|.+++++|+.+.+|+++++++.+ + || .+.+++..++ .+....+
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKSVDESKELNALSG 80 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEESHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecccccccccccCCC
Confidence 79999999999998764 799999999999999999999999999876543 2 35 3444444442 2333569
Q ss_pred CeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCccccc
Q 043917 91 PCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKL 136 (423)
Q Consensus 91 P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~L 136 (423)
|+|||||||||++|+|+++|++|++||+|+|+|||||++||+||+|
T Consensus 81 p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 81 PKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp SEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 9999999999999999999999999999999999999999999986
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.74 E-value=2.1e-17 Score=171.17 Aligned_cols=192 Identities=16% Similarity=0.196 Sum_probs=141.8
Q ss_pred hhh-cCCCeEEEccCc--hhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhcCCCCCCccc
Q 043917 3 KCV-AGGGKVLIPAFA--LGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAFDFKNVH 79 (423)
Q Consensus 3 ~tl-~~GG~VLIPvFA--LGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~npF~f~~v~ 79 (423)
+.+ +.+|++++|+|| ++|.|+++.+..++ +.||++++.+..+.+.+|+.+ .+++ .| ....+
T Consensus 212 ~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~-------~~-~~~~~- 275 (422)
T TIGR00649 212 DIFKNAKGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIK-------NP-HNNFI- 275 (422)
T ss_pred HHHHhCCCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCcc-------CC-cccee-
Confidence 344 678999999999 99999999999887 668999987888888777654 3321 11 00001
Q ss_pred cccccccc-CCCCeEEEECCCCCCcccHHHHHHHhCCCC--------CCeEeeccccCCCCcccccccCCCeeeecCeEE
Q 043917 80 NFDRSLID-APGPCVLFATPGMLTGGFSLEVFKHWAPSE--------MNLITLPGYCLAGTIGNKLMSGNPTIELEGTKI 150 (423)
Q Consensus 80 ~~~~~~~~-~~~P~VIiAssGML~~G~S~~~~~~~~~d~--------kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i 150 (423)
.. +.... .++++||++|++ +||+ ..++.+++.++ .++|||+ +++++|++.++....+ ++.-.
T Consensus 276 ~~-~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s---~~~~~G~~~~~~~~~~--~~~~~ 346 (422)
T TIGR00649 276 SL-KEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFS---APPIPGNENIAVSILL--DIRLN 346 (422)
T ss_pred CH-HHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEE---CCCCCcHHHHHHHHHH--HHHHH
Confidence 11 12222 347999999998 7888 77888898875 3677777 7889998744322111 21122
Q ss_pred EEeeeEEE-EecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCC---eeecCCCCCEEEecC
Q 043917 151 DVRCQIHQ-LAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI---KCYDPANNESMCIPS 220 (423)
Q Consensus 151 ~Vr~~V~~-i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~---~v~~P~~Ge~v~l~~ 220 (423)
.+.++|.+ +.||+||++++|..+++.++|+.+|.||||......+++.++ +.|+ ++++|+||+.+.+..
T Consensus 347 ~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~~a~-~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 347 EVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTKLAE-EEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred hcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHHHHH-HcCCCcccEEEecCCcEEEecC
Confidence 34445544 789999999999999999999999999999999999998775 4686 799999999998854
No 9
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.62 E-value=9.1e-15 Score=151.39 Aligned_cols=252 Identities=17% Similarity=0.205 Sum_probs=182.2
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhhc----CCCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKETY----NAFDF 75 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~----npF~f 75 (423)
|..++++||+||+|++..|-.-||+..|.++.+..++ +.|||+.||+|..+.++.+.+.+|++...++.. .||..
T Consensus 286 vt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~h 365 (653)
T KOG1138|consen 286 VTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPH 365 (653)
T ss_pred HHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCC
Confidence 3568999999999999999999999999999987766 899999999999999999999999998877652 56654
Q ss_pred Cccccccc---------cc-ccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeee
Q 043917 76 KNVHNFDR---------SL-IDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL 145 (423)
Q Consensus 76 ~~v~~~~~---------~~-~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i 145 (423)
..+....+ .+ ++...||||++++..+.-|.+.|+++-|..+|+|+||||. +-+.+.+.-.+
T Consensus 366 s~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~td----pD~~~~~vl~P----- 436 (653)
T KOG1138|consen 366 STLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTD----PDFSYLLVLAP----- 436 (653)
T ss_pred ceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeC----CCCchhhhhcC-----
Confidence 44321111 11 3457899999999999999999999999999999999994 21111111111
Q ss_pred cCeEEEEeeeEEEEecCCCCChHHHHHHHHhcCCCEEEEecCC--hhHHH-HHHHHHHHHhCCeeecCCCCCEEEecCcc
Q 043917 146 EGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGE--KPKMA-TLKERIQSELGIKCYDPANNESMCIPSTH 222 (423)
Q Consensus 146 ~g~~i~Vr~~V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe--~~~~~-~L~~~L~~~~g~~v~~P~~Ge~v~l~~~~ 222 (423)
..++.+++-+++|--.-|+.++-.+++.++|+.|++--.- +...+ .+.-.+.+ -.+...-+.+|.+++|.+.
T Consensus 437 ---frpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpeaytqp~~~ap~~~i~~~d--~~pi~t~~c~ei~~lp~Kr 511 (653)
T KOG1138|consen 437 ---FRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEAYTQPIPLAPIKTISILD--YFPIKTLHCPEIVDLPNKR 511 (653)
T ss_pred ---CccccceeEeccccccccHHHHHHHHHHhCCCEEEChhhhcCCCCccchheehhcc--ccccceeehhHHhcCcccc
Confidence 1266778889999999999999999999999987764221 11111 11111111 1234445667888899777
Q ss_pred eE-EecccHHHHhccCCCcccccccCccccccCCCcccCCCCCCCCCCCceeeeEEEecCCCCceeee
Q 043917 223 YV-KAGASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVH 289 (423)
Q Consensus 223 ~~-~v~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv~~~~~~~~l~~ 289 (423)
.. +|.+...+.+++.+-+.. ...-.-..+.|+|.|+ +++-+|+.
T Consensus 512 kl~~veItpela~kLs~ke~~----------------------~~~~~iAtl~~~L~~~-d~kh~Lvp 556 (653)
T KOG1138|consen 512 KLVSVEITPELASKLSPKELR----------------------QGEFGIATLKGVLLMK-DGKHRLVP 556 (653)
T ss_pred ceeEEEEcHHHHhhCChhhcc----------------------CceeEEEEEEEEEEEe-cCceeeee
Confidence 74 999999998877653210 0001123478999995 57888877
No 10
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.39 E-value=3.3e-13 Score=97.74 Aligned_cols=43 Identities=40% Similarity=0.736 Sum_probs=37.6
Q ss_pred eEEEEeeeEEEEecCCCCChHHHHHHHHhcCCCEEEEecCChh
Q 043917 148 TKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKP 190 (423)
Q Consensus 148 ~~i~Vr~~V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~ 190 (423)
+.++|+|+|++++||||||+++|++|++.++|++||+||||++
T Consensus 1 e~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp CEEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred CEEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 3589999999999999999999999999999999999999974
No 11
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=96.65 E-value=0.028 Score=61.27 Aligned_cols=191 Identities=15% Similarity=0.216 Sum_probs=104.0
Q ss_pred cCCCeEEEccCch--hHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhcCCC-CCCcccccc
Q 043917 6 AGGGKVLIPAFAL--GRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAF-DFKNVHNFD 82 (423)
Q Consensus 6 ~~GG~VLIPvFAL--GRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~npF-~f~~v~~~~ 82 (423)
...|+|++-+||- +|.|.++.+=..+ +-+|.+.+--..+.....+....|-... +.| ..+.+..+
T Consensus 224 ~a~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~~~-----~~~i~~~~~~~~- 291 (555)
T COG0595 224 NAKGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKLPD-----ESFIEIREVKRY- 291 (555)
T ss_pred hCCCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccCcc-----ccccCHHHhccc-
Confidence 3468999999985 8999988776665 5577776533333333322221110000 000 00001111
Q ss_pred cccccCCCCeEEEECCCCCCcccHHHHHHHhCCC--------CCCeEeeccccCCC--CcccccccCCCeeeecCeEEEE
Q 043917 83 RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPS--------EMNLITLPGYCLAG--TIGNKLMSGNPTIELEGTKIDV 152 (423)
Q Consensus 83 ~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d--------~kN~IiltGYq~eG--TlGr~Ll~g~~~I~i~g~~i~V 152 (423)
...--+|++|..+-+- . ..+.+.+.+ +...++|+--..+| ..-.++++. +...|..+
T Consensus 292 -----~~~~~lii~TG~qgep--~-aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~---l~~~g~~i-- 358 (555)
T COG0595 292 -----PDEEVLIICTGSQGEP--M-AALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNR---LYKAGAKV-- 358 (555)
T ss_pred -----cccceEEEEeCCCCCc--h-hhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHH---HHhcCcEE--
Confidence 1123355555443222 1 222222222 33456666544444 111122210 11112221
Q ss_pred eee-EEEEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCC---eeecCCCCCEEEecCcc
Q 043917 153 RCQ-IHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI---KCYDPANNESMCIPSTH 222 (423)
Q Consensus 153 r~~-V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~---~v~~P~~Ge~v~l~~~~ 222 (423)
.-. ...+--|+|+.++++..+++.++|+.++-||||.......++.- .+.|+ ++++++||+.+.+....
T Consensus 359 ~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la-~~~G~~~~~i~i~~nG~v~~l~~~~ 431 (555)
T COG0595 359 ITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLA-EEEGIPQENIFILRNGDVLELEGGK 431 (555)
T ss_pred eecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHHHH-HhcCCCcccEEEecCceEEEecCCc
Confidence 111 13445799999999999999999999999999987665555433 34453 59999999999998754
No 12
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=96.22 E-value=0.034 Score=53.59 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=72.1
Q ss_pred CceeeeEEEecCCCCceeeehhHHHHHhCCceeeEEeeeeeeccccCccccccccCCcccccCCCCChhHHHHHHHHHHH
Q 043917 270 ERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLS 349 (423)
Q Consensus 270 ~~~~~g~lv~~~~~~~~l~~~~~~~~~l~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (423)
+..++||||. ++|++.||+|+|+.+--+++-..|+=....++. ..++.|+.+|.
T Consensus 2 G~~vsGvLV~-~~f~~~lm~p~DL~~yt~L~ts~i~Qrq~i~~~-------------------------~~~~ll~~~L~ 55 (216)
T PF11718_consen 2 GQQVSGVLVK-KDFDYHLMAPDDLREYTDLSTSTITQRQSIPFN-------------------------GSFSLLRWHLE 55 (216)
T ss_pred CcEEEEEEEe-cCCcccEEcHHHHhhcCCeeeeEEEEEEEEEeC-------------------------CCHHHHHHHHH
Confidence 6789999997 669999999999999889998877765555552 12578899999
Q ss_pred hhcCCCceeecCC----ceEEEEEEEEEeeecCCCccccCCCCCCCCceEEEEEecc--cchHHHHHHHHHhh
Q 043917 350 RKLSEGNIQDFGE----HLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSA--ADDKLARKIISAME 416 (423)
Q Consensus 350 ~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~--~de~l~~~~~~~~~ 416 (423)
+.+.+..+-..+. ..-..+|.|.++ . ...+.+.|.- -+.-+|.-|+.++-
T Consensus 56 ~~fg~ve~~~~~~~~~~l~V~~~V~v~~~----------~-------~~~v~lEW~s~~~nDmiADsv~a~il 111 (216)
T PF11718_consen 56 QMFGDVEEIEDDEGKPTLRVMGCVTVTYD----------P-------NEEVVLEWESSPVNDMIADSVVAVIL 111 (216)
T ss_pred HhhCceEEeecCCCceEEEEeeeEEEEEe----------C-------CcEEEEEEcCCcchhHHHHHHHHHHH
Confidence 9998766655543 344456666663 1 1168899964 33445555555543
No 13
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=96.11 E-value=0.033 Score=47.69 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=57.8
Q ss_pred CCCeEEEECCCCCCcccHHHHHHHhCCCCCCe--EeeccccCCCCcccccccCCCeeeecCeEEEEeeeEEEEecCCCCC
Q 043917 89 PGPCVLFATPGMLTGGFSLEVFKHWAPSEMNL--ITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTD 166 (423)
Q Consensus 89 ~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~--IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~~i~fSaHAD 166 (423)
....|=+++-+.++......+++..-++..+. |.-|||.....-+.....-.+.. ...-+..+..++||.|+.
T Consensus 12 ~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~-----~~~~~~~~~~VPYSeHSS 86 (110)
T PF07522_consen 12 SETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSL-----QSRGNVRIYRVPYSEHSS 86 (110)
T ss_pred CCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCcccccccccc-----ccCCCceEEEEecccCCC
Confidence 45667777777677556666777776666664 44568654333222211000000 012234678889999999
Q ss_pred hHHHHHHHHhcCCCEEE
Q 043917 167 GKGIMDLVKFLSPQHVI 183 (423)
Q Consensus 167 ~~~Ll~lI~~l~P~~Vi 183 (423)
+.+|.+|++.++|++|+
T Consensus 87 f~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 87 FSELKEFVSFLKPKKII 103 (110)
T ss_pred HHHHHHHHHhcCCcEEE
Confidence 99999999999999987
No 14
>PRK00685 metal-dependent hydrolase; Provisional
Probab=89.81 E-value=0.77 Score=43.17 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCCh-----hHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEK-----PKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~-----~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
..|.+..+..++++.++|+.+|++|-+. ...+.|++.+++ .+.++..|+.|+++++
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG-LGTKVVILKPGESIEL 228 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh-cCCcEEECCCCCEeeC
Confidence 4589999999999999999999999642 345778888876 7788999999999875
No 15
>PRK00055 ribonuclease Z; Reviewed
Probab=82.56 E-value=3.2 Score=39.70 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=47.3
Q ss_pred cCCCCChHHHHHHHHhcCCCEEEEecCChhH---HHHHHHHHHHHhCCeeecCCCCCEEEecC
Q 043917 161 FSPHTDGKGIMDLVKFLSPQHVILVHGEKPK---MATLKERIQSELGIKCYDPANNESMCIPS 220 (423)
Q Consensus 161 fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~---~~~L~~~L~~~~g~~v~~P~~Ge~v~l~~ 220 (423)
...|+...+..++.++++|++++++|=.+.. .+.+.+.+++.+ -++.++..|.+++|+.
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~~ 268 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIF-PNTELAEDLMRVEVPF 268 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHc-CCcEEccCCcEEEecC
Confidence 4789999999999999999999999976542 345566666555 3789999999999864
No 16
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=65.63 E-value=9.9 Score=39.20 Aligned_cols=84 Identities=14% Similarity=0.293 Sum_probs=53.7
Q ss_pred CeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeeecCeEEEEeeeEEEE--ecCCCCChH
Q 043917 91 PCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL--AFSPHTDGK 168 (423)
Q Consensus 91 P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~~i--~fSaHAD~~ 168 (423)
--.+|+++| ++|+-..+-.-+.+..+-.+..+| +.|.+-.+-.+ +..++|+.+ ++-.|+..+
T Consensus 69 ~tf~isgsG--h~g~E~al~N~lePgd~vLv~~~G-----~wg~ra~D~~~---------r~ga~V~~v~~~~G~~~~le 132 (385)
T KOG2862|consen 69 QTFVISGSG--HSGWEAALVNLLEPGDNVLVVSTG-----TWGQRAADCAR---------RYGAEVDVVEADIGQAVPLE 132 (385)
T ss_pred ceEEEecCC--cchHHHHHHhhcCCCCeEEEEEec-----hHHHHHHHHHH---------hhCceeeEEecCcccCccHH
Confidence 345677777 566544433333343333344444 55544332111 234556666 799999999
Q ss_pred HHHHHHHhcCCCEEEEecCChh
Q 043917 169 GIMDLVKFLSPQHVILVHGEKP 190 (423)
Q Consensus 169 ~Ll~lI~~l~P~~ViLVHGe~~ 190 (423)
++.+=+.+-+|+-|+++|||..
T Consensus 133 ~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 133 EITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred HHHHHHHhcCCceEEEEecCcc
Confidence 9999999999999999999953
No 17
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=61.85 E-value=13 Score=35.84 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
-+|++..+..++++..+|++++|.|=++. +..+.... ..+.-.+.++..|.++++
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~~-~~~~~~~~-~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISHQ-LDAWLMEN-AALPSGVEVAYDGMEIGL 250 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccCC-cchhhhhh-hhcCCceEEecCccEeeC
Confidence 46999999999999999999999997553 22222222 122235667777777653
No 18
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=57.73 E-value=10 Score=34.08 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=24.3
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEec
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVH 186 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVH 186 (423)
+.|++..+++++++.++|++|+++|
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 169 PGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp TTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 8899999999999999999999999
No 19
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=56.27 E-value=15 Score=34.97 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP 190 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~ 190 (423)
-.|++..+..+++++++|++++++|=+..
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~H~~~~ 214 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILTHISHQ 214 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEEecccc
Confidence 36999999999999999999999998654
No 20
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=50.21 E-value=39 Score=33.08 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh--HHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP--KMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~--~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
.+|+...+..++.++.++++++|+|=.+. ....+.+++++.++ ++..+.-|.++++
T Consensus 242 ~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~-~~~~a~dg~~~~~ 299 (299)
T TIGR02651 242 YGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFP-NTYIAEDFMEIEI 299 (299)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCC-CcEEccCccEeeC
Confidence 57999999999999999999999995442 23455555554433 5777777777653
No 21
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.58 E-value=98 Score=27.86 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=43.3
Q ss_pred ecCCCCChHHHHHHHHhcCCCEEE-------EecCChhHHHHHHHHHHHHhCCeeecCCCC
Q 043917 160 AFSPHTDGKGIMDLVKFLSPQHVI-------LVHGEKPKMATLKERIQSELGIKCYDPANN 213 (423)
Q Consensus 160 ~fSaHAD~~~Ll~lI~~l~P~~Vi-------LVHGe~~~~~~L~~~L~~~~g~~v~~P~~G 213 (423)
+=|+-..-.++.+||..++|.-.| ++||+++....+++++++..+.++|+-..|
T Consensus 12 apsa~vsp~elv~~l~~~~~PvtiKeTCfGaii~G~Ed~v~klveriR~~d~~~IF~KdRG 72 (142)
T COG4029 12 APSAGVSPKELVQKLLELSPPVTIKETCFGAIIDGPEDEVRKLVERIRELDGNAIFSKDRG 72 (142)
T ss_pred cCccCcChHHHHHHHHhcCCCeEeeeeeeeeeecCcHHHHHHHHHHHHHhccCceeecccC
Confidence 457778889999999988765222 799999999999999998777777765554
No 22
>COG1647 Esterase/lipase [General function prediction only]
Probab=46.79 E-value=23 Score=34.86 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=27.6
Q ss_pred CEEEEecC---ChhHHHHHHHHHHHHhCCeeecCCC
Q 043917 180 QHVILVHG---EKPKMATLKERIQSELGIKCYDPAN 212 (423)
Q Consensus 180 ~~ViLVHG---e~~~~~~L~~~L~~~~g~~v~~P~~ 212 (423)
+-|.|+|| .+..+..|++.|+++ |+.||+|..
T Consensus 16 ~AVLllHGFTGt~~Dvr~Lgr~L~e~-GyTv~aP~y 50 (243)
T COG1647 16 RAVLLLHGFTGTPRDVRMLGRYLNEN-GYTVYAPRY 50 (243)
T ss_pred EEEEEEeccCCCcHHHHHHHHHHHHC-CceEecCCC
Confidence 67899995 678889999999865 999999976
No 23
>PRK02113 putative hydrolase; Provisional
Probab=46.24 E-value=45 Score=31.93 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=38.7
Q ss_pred cCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEE
Q 043917 161 FSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMC 217 (423)
Q Consensus 161 fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~ 217 (423)
...|....+..++++++++++++|+|=.+. .. ..+++++.+..+++++.-|.+++
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~-~~-~~~~~~~~~~~~~~~A~Dg~~~~ 251 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIHMSHH-IG-LHADVEKELPPHVHFAYDGLEII 251 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEccccc-ch-hHHHHHHhCCCCceeccCceEEe
Confidence 467999999999999999999999994332 11 12344444444566777776665
No 24
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=45.99 E-value=47 Score=32.99 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh----HHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP----KMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~----~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
.+|+...+..++.+..++++++|+|=.+. ..+.+.++.++.+. .+.++.-|.++.+
T Consensus 244 ~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~-~~~~a~d~~~~~~ 303 (303)
T TIGR02649 244 RGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFNV 303 (303)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC-CCEecccccEEeC
Confidence 47999999999999999999999995542 23556566665543 4677777777653
No 25
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=43.15 E-value=62 Score=28.94 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=32.8
Q ss_pred EEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHH
Q 043917 158 QLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQ 200 (423)
Q Consensus 158 ~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~ 200 (423)
-+.+++|.+.+.|.+.+++.+|+.|++.. ++..++|++.+.
T Consensus 27 v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~--~~~~~~l~~~~~ 67 (129)
T PF02670_consen 27 VVALSAGSNIEKLAEQAREFKPKYVVIAD--EEAYEELKKALP 67 (129)
T ss_dssp EEEEEESSTHHHHHHHHHHHT-SEEEESS--HHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHhCCCEEEEcC--HHHHHHHHHHhh
Confidence 34789999999999999999999988854 446677777775
No 26
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=37.35 E-value=1.6e+02 Score=32.04 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=31.5
Q ss_pred eeeEEEEecCCCCChHHHHHHHHhcCCCEEEEecCChh
Q 043917 153 RCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKP 190 (423)
Q Consensus 153 r~~V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~ 190 (423)
++.+..+++|.|+-+.+|..|+++++|+.||=.=|+..
T Consensus 376 ~i~~~~vpYseHSs~~el~~f~~~lk~k~iiptv~~~~ 413 (481)
T KOG1361|consen 376 KIPISLVPYSEHSSYTELSEFLSKLKPKTIIPTVNEDT 413 (481)
T ss_pred ccccccccccccCCHHHHHHHHHhcCCCeeecCccCCc
Confidence 45666779999999999999999999999995555443
No 27
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=36.15 E-value=1e+02 Score=31.28 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCeEEEECCCCCCcccHHHHHHHhCC-CCCCeEeeccccCCCCcccccccCCCeeeecCeEEEEeeeEEEEecCCCCChH
Q 043917 90 GPCVLFATPGMLTGGFSLEVFKHWAP-SEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGK 168 (423)
Q Consensus 90 ~P~VIiAssGML~~G~S~~~~~~~~~-d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~~i~fSaHAD~~ 168 (423)
.+.++.++|| ..++++.-+.++ .+..-|+++.|....|..--+..|. .+|-|.|. +-+..-|..
T Consensus 40 ~~~~~~~~sg----t~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~---------~pv~~Di~--~~~~~id~~ 104 (363)
T PF01041_consen 40 VKYAVAVSSG----TSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGA---------EPVFVDID--PETLNIDPE 104 (363)
T ss_dssp SSEEEEESSH----HHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT----------EEEEE-BE--TTTSSB-HH
T ss_pred CCeEEEeCCh----hHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhcc---------EEEEEecc--CCcCCcCHH
Confidence 4556777665 345555444444 5677899999998887654444443 25555555 356667888
Q ss_pred HHHHHHHhcCCCEEEEec--CChhHHHHHHHHHHH
Q 043917 169 GIMDLVKFLSPQHVILVH--GEKPKMATLKERIQS 201 (423)
Q Consensus 169 ~Ll~lI~~l~P~~ViLVH--Ge~~~~~~L~~~L~~ 201 (423)
.+.+.|.. +.+-|++|| |-+..+..+.+..++
T Consensus 105 ~~~~~i~~-~t~ai~~~h~~G~~~d~~~i~~~~~~ 138 (363)
T PF01041_consen 105 ALEKAITP-KTKAILVVHLFGNPADMDAIRAIARK 138 (363)
T ss_dssp HHHHHHHT-TEEEEEEE-GGGB---HHHHHHHHHH
T ss_pred HHHHHhcc-CccEEEEecCCCCcccHHHHHHHHHH
Confidence 88877663 226788887 888888888877765
No 28
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=31.41 E-value=83 Score=30.14 Aligned_cols=102 Identities=17% Similarity=0.302 Sum_probs=59.7
Q ss_pred HHHHHHHhCCCCCCeEeeccccCCCCccccccc----C-----CCe---eee--cCeEEEEeeeEEEE-ecCCCCChHHH
Q 043917 106 SLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMS----G-----NPT---IEL--EGTKIDVRCQIHQL-AFSPHTDGKGI 170 (423)
Q Consensus 106 S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~----g-----~~~---I~i--~g~~i~Vr~~V~~i-~fSaHAD~~~L 170 (423)
+.+|.++|-.+ -++|.||.. |..++. . +.+ +.+ .+.....+.+|..+ +.++..+.-..
T Consensus 58 i~~y~~~w~~~---~vvLiGYSF----GADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~~~~~~~~~ 130 (192)
T PF06057_consen 58 IRHYRARWGRK---RVVLIGYSF----GADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMGGDDAAYPV 130 (192)
T ss_pred HHHHHHHhCCc---eEEEEeecC----CchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCCCCcccCCc
Confidence 45778888664 489999985 444432 1 011 222 33444444444443 44444443468
Q ss_pred HHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEecCcceE
Q 043917 171 MDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYV 224 (423)
Q Consensus 171 l~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l~~~~~~ 224 (423)
..-++++.+..|.+|.|+.++- .+...+. ..+.+.|.+|..-.+
T Consensus 131 ~pei~~l~~~~v~CiyG~~E~d-~~cp~l~---------~~~~~~i~lpGgHHf 174 (192)
T PF06057_consen 131 IPEIAKLPPAPVQCIYGEDEDD-SLCPSLR---------QPGVEVIALPGGHHF 174 (192)
T ss_pred hHHHHhCCCCeEEEEEcCCCCC-CcCcccc---------CCCcEEEEcCCCcCC
Confidence 8888999999999999998744 2332222 235667777664433
No 29
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=30.67 E-value=84 Score=27.63 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=34.7
Q ss_pred EEeeeEEEE-ecCCCCChHHHHHHHHhc-CCCEEEEecCChhHHHHH
Q 043917 151 DVRCQIHQL-AFSPHTDGKGIMDLVKFL-SPQHVILVHGEKPKMATL 195 (423)
Q Consensus 151 ~Vr~~V~~i-~fSaHAD~~~Ll~lI~~l-~P~~ViLVHGe~~~~~~L 195 (423)
..++++.-+ +||+|+..+.+.+||... +-++++++.-..++.++|
T Consensus 67 NY~iklAivGD~s~~~~S~~l~dfi~EsN~G~~~~F~~~~~eA~~~L 113 (113)
T PF13788_consen 67 NYRIKLAIVGDFSAYATSKSLRDFIYESNRGNHFFFVPDEEEAIAWL 113 (113)
T ss_pred hhceeEEEEEcccccccchhHHHHHHHhcCCCeEEEECCHHHHHhhC
Confidence 334455666 799998899999999877 468999998877766554
No 30
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=28.71 E-value=63 Score=28.67 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=16.1
Q ss_pred EEEEecCChhHH-HHHHHHHHHHhCCeee
Q 043917 181 HVILVHGEKPKM-ATLKERIQSELGIKCY 208 (423)
Q Consensus 181 ~ViLVHGe~~~~-~~L~~~L~~~~g~~v~ 208 (423)
+||+|||+.... +.++..|. .++.++.
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~-~~~~ep~ 28 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLE-KLGLEPI 28 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHH-hCCCceE
Confidence 589999955444 44455554 4565433
No 31
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=26.93 E-value=54 Score=32.07 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.3
Q ss_pred cCCCCChHHHHHHHHhcCCCEEEEecCChhHHHH
Q 043917 161 FSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMAT 194 (423)
Q Consensus 161 fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~ 194 (423)
++.|-..++.++|+...+|++++|.|=+...-.+
T Consensus 209 ~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~ 242 (269)
T COG1235 209 LSNHLSAEEALELIEKLKPKRLVLTHLSHKNDDE 242 (269)
T ss_pred CCCchhHHHHHHHHHhCCcceEEEEecCCCCCHH
Confidence 9999999999999999999999999866554433
No 32
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=26.74 E-value=2.2e+02 Score=27.52 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceeecC-Cc----eEEEEEEEEEeeecCCCccccCCCCCCCCceEEEEEecccchHHH
Q 043917 334 DPNKSSLIRLLVAKLSRKLSEGNIQDFG-EH----LQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLA 408 (423)
Q Consensus 334 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~de~l~ 408 (423)
..+...-++.|...|++.|++..+...+ +. +++....+.+.+. +..+.|. ||.|-
T Consensus 140 ~~~~~~~~~~l~~~L~~qFG~~~~~~~~~~~~~~~v~vd~~~A~I~~~----------------t~~Vec~----d~~Lk 199 (216)
T PF11718_consen 140 KSDEEERLERLIELLEAQFGDVEVPDIEKPKEPLSVTVDGKVAHIDLS----------------TLEVECE----DEPLK 199 (216)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCccccccccceeEEEEeCCcEEEEecC----------------CCceecC----CHHHH
Confidence 4456677899999999999999877654 22 5666666666432 3455566 99999
Q ss_pred HHHHHHhhhc
Q 043917 409 RKIISAMENR 418 (423)
Q Consensus 409 ~~~~~~~~~~ 418 (423)
.+|-++++..
T Consensus 200 ~rve~~l~r~ 209 (216)
T PF11718_consen 200 QRVETALKRL 209 (216)
T ss_pred HHHHHHHHHH
Confidence 9999888753
No 33
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=25.14 E-value=1.2e+02 Score=31.87 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=57.0
Q ss_pred cHHHHHHHhC-CCCCCeEeeccccCCCCcccccccCCCeeeecCeEEEEeeeEEEEecCCCCChHHHHHHHHhcCCCEEE
Q 043917 105 FSLEVFKHWA-PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVI 183 (423)
Q Consensus 105 ~S~~~~~~~~-~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~~i~fSaHAD~~~Ll~lI~~l~P~~Vi 183 (423)
.++++..+-+ =.|..-||.|.+....|..--++.|.. ||-+.|..- |.--|.+.+-+-|..- ++-||
T Consensus 60 ~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~---------PVFvDid~~--T~nid~~~ie~aIt~~-tKAIi 127 (374)
T COG0399 60 AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAK---------PVFVDIDPD--TLNIDPDLIEAAITPR-TKAII 127 (374)
T ss_pred HHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCe---------EEEEecCCc--ccCCCHHHHHHHcccC-CeEEE
Confidence 5566655433 367778999988887776655555553 444444322 2225666666665543 78999
Q ss_pred Eec--CChhHHHHHHHHHHHHhCCe
Q 043917 184 LVH--GEKPKMATLKERIQSELGIK 206 (423)
Q Consensus 184 LVH--Ge~~~~~~L~~~L~~~~g~~ 206 (423)
.|| |-+-.|+.+.+-. ++.|+.
T Consensus 128 pVhl~G~~~dm~~i~~la-~~~~l~ 151 (374)
T COG0399 128 PVHLAGQPCDMDAIMALA-KRHGLP 151 (374)
T ss_pred EehhccCCCCHHHHHHHH-HHcCCe
Confidence 998 9999999988554 455643
No 34
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=24.93 E-value=1.1e+02 Score=30.10 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCC
Q 043917 178 SPQHVILVHGEKPKMATLKERIQSELGIKCYDPAN 212 (423)
Q Consensus 178 ~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~ 212 (423)
.+..|+|+ |....+..|.+.+++.+|.+++.|.+
T Consensus 221 ~~~~IvLt-GG~s~lpgl~e~l~~~lg~~v~~~~~ 254 (267)
T PRK15080 221 DVEDIYLV-GGTCCLPGFEEVFEKQTGLPVHKPQH 254 (267)
T ss_pred CCCEEEEE-CCcccchhHHHHHHHHhCCCcccCCC
Confidence 67888887 55677889999999999988877643
No 35
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=21.92 E-value=1e+02 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEecCCh---hHHHHHHHHHHHHhCCeeecCC
Q 043917 182 VILVHGEK---PKMATLKERIQSELGIKCYDPA 211 (423)
Q Consensus 182 ViLVHGe~---~~~~~L~~~L~~~~g~~v~~P~ 211 (423)
||++||.. ..+..+++.+.+. |+.++.|.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~-G~~v~~~~ 33 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQ-GYAVVAFD 33 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHT-TEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-CCEEEEEe
Confidence 78999854 5566777777765 88877774
No 36
>PRK14701 reverse gyrase; Provisional
Probab=21.90 E-value=1.5e+03 Score=28.77 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=23.4
Q ss_pred hHHHHHHHHhcCCCEEEEecCChh--HHHHHHHHHHH
Q 043917 167 GKGIMDLVKFLSPQHVILVHGEKP--KMATLKERIQS 201 (423)
Q Consensus 167 ~~~Ll~lI~~l~P~~ViLVHGe~~--~~~~L~~~L~~ 201 (423)
...++++++...+.-+|++-.... ..+.+++.|.+
T Consensus 319 k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~ 355 (1638)
T PRK14701 319 KEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLE 355 (1638)
T ss_pred HHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHH
Confidence 346778888777777777765432 35677777765
No 37
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.00 E-value=2.9e+02 Score=25.32 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCCCCcc-cHHHHHHHhCCCCCCeEeecccc-CCCCcccccccCCCeeeecCeEEEEeeeEEEE-ecCCC
Q 043917 88 APGPCVLFATPGMLTGG-FSLEVFKHWAPSEMNLITLPGYC-LAGTIGNKLMSGNPTIELEGTKIDVRCQIHQL-AFSPH 164 (423)
Q Consensus 88 ~~~P~VIiAssGML~~G-~S~~~~~~~~~d~kN~IiltGYq-~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~~i-~fSaH 164 (423)
...|.|+++.+| +.+- +.-.+..+.+.|-.--|+-+|-. .+.-..+..+++ +. .|--+ +++++
T Consensus 10 g~rprvlvak~G-lDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~-------dv------~vIgvSsl~g~ 75 (143)
T COG2185 10 GARPRVLVAKLG-LDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE-------DV------DVIGVSSLDGG 75 (143)
T ss_pred CCCceEEEeccC-ccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc-------CC------CEEEEEeccch
Confidence 468999999999 6665 67778888888888778877733 332222222211 11 11122 23332
Q ss_pred --CChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCC-eeecCC
Q 043917 165 --TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI-KCYDPA 211 (423)
Q Consensus 165 --AD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~-~v~~P~ 211 (423)
.+..++.+.++......+.++=|..-..+++ +.+++ .|. .+|.|.
T Consensus 76 h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~-~~l~~-~G~~~if~pg 123 (143)
T COG2185 76 HLTLVPGLVEALREAGVEDILVVVGGVIPPGDY-QELKE-MGVDRIFGPG 123 (143)
T ss_pred HHHHHHHHHHHHHHhCCcceEEeecCccCchhH-HHHHH-hCcceeeCCC
Confidence 2456777777778888998666665555553 34544 464 577773
No 38
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=20.43 E-value=2.3e+02 Score=28.45 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHhcCCCEEEEecCChhH---HHHHHHHHHHHhCCeeecCCCCCEEEec
Q 043917 164 HTDGKGIMDLVKFLSPQHVILVHGEKPK---MATLKERIQSELGIKCYDPANNESMCIP 219 (423)
Q Consensus 164 HAD~~~Ll~lI~~l~P~~ViLVHGe~~~---~~~L~~~L~~~~g~~v~~P~~Ge~v~l~ 219 (423)
|+-..+..+..++.+.++++|.|=.+.. .+.+.++.+..+.-+++++..+.+++++
T Consensus 234 HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~~~~ea~~~f~~~~~~a~D~~~~~v~ 292 (292)
T COG1234 234 HSTAEEAAEIAKEAGVKKLILTHFSPRYPKDDEELLKEARAIFPGETIVARDGLVFEVP 292 (292)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeecccccchHHHHHHHHHHhCCCceEEeccceEEecC
Confidence 9999999999999999999999966544 3444445554443368888888887763
No 39
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=4.1e+02 Score=28.81 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=29.1
Q ss_pred eeEEEEecCCCC-C-hHH-HHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCe
Q 043917 154 CQIHQLAFSPHT-D-GKG-IMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIK 206 (423)
Q Consensus 154 ~~V~~i~fSaHA-D-~~~-Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~ 206 (423)
..|+++-+-.+. + ..+ |..+++...+..+|...-.....+.|+..|.. .|++
T Consensus 245 ~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~-~g~~ 299 (513)
T COG0513 245 KKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRK-RGFK 299 (513)
T ss_pred cCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHH-CCCe
Confidence 345555443433 2 333 33555555666666666666677777777765 3443
Done!