Query 043917
Match_columns 423
No_of_seqs 239 out of 1187
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iek_A Ribonuclease TTHA0252; 100.0 3.5E-53 1.2E-57 436.3 20.5 214 1-218 208-431 (431)
2 2i7t_A Cleavage and polyadenyl 100.0 1.1E-48 3.9E-53 403.8 19.7 220 1-220 226-458 (459)
3 3af5_A Putative uncharacterize 100.0 2.3E-41 7.9E-46 365.0 21.6 216 2-218 417-650 (651)
4 2xr1_A Cleavage and polyadenyl 100.0 9.7E-41 3.3E-45 359.6 20.8 217 1-218 404-639 (640)
5 2ycb_A Beta-CAsp RNAse, cleava 100.0 5.6E-40 1.9E-44 353.2 20.0 216 2-218 402-635 (636)
6 2i7x_A Protein CFT2; polyadeny 99.9 1.2E-27 4.1E-32 261.0 16.2 134 2-138 235-382 (717)
7 3zq4_A Ribonuclease J 1, RNAse 99.8 1.2E-21 4.1E-26 208.1 9.6 192 2-222 216-428 (555)
8 3bk2_A RNAse J, metal dependen 99.8 3.8E-21 1.3E-25 204.1 12.1 186 7-222 238-443 (562)
9 2az4_A Hypothetical protein EF 99.4 3.9E-14 1.3E-18 144.0 4.5 177 3-218 246-429 (429)
10 4b87_A DNA cross-LINK repair 1 98.7 6.8E-08 2.3E-12 97.6 10.4 163 3-200 191-359 (367)
11 3zdk_A 5' exonuclease apollo; 98.2 1.1E-06 3.9E-11 87.7 6.0 35 156-190 269-304 (336)
12 3rpc_A Possible metal-dependen 92.0 0.27 9.3E-06 46.1 6.8 56 162-218 202-264 (264)
13 2wyl_A L-ascorbate-6-phosphate 91.4 0.35 1.2E-05 47.7 7.1 61 162-222 257-327 (360)
14 3bv6_A Metal-dependent hydrola 90.0 0.45 1.5E-05 47.4 6.6 61 162-222 282-352 (379)
15 1zkp_A Hypothetical protein BA 84.2 1.4 4.8E-05 40.8 5.8 55 163-217 212-267 (268)
16 2e7y_A TRNAse Z; tRNA maturati 83.2 2.7 9.3E-05 38.7 7.4 57 162-218 220-280 (280)
17 1y44_A Ribonuclease Z; zinc-de 77.4 4.6 0.00016 38.3 7.0 58 162-220 245-306 (320)
18 2cbn_A Ribonuclease Z; phospho 70.4 7.9 0.00027 36.2 6.7 56 162-218 247-306 (306)
19 3md7_A Beta-lactamase-like; ss 68.2 7.3 0.00025 36.7 5.9 56 161-219 237-292 (293)
20 4fbl_A LIPS lipolytic enzyme; 52.3 11 0.00039 34.4 4.0 31 181-212 53-86 (281)
21 3zwf_A Zinc phosphodiesterase 50.5 17 0.00057 35.9 5.1 61 162-222 287-361 (368)
22 3kl7_A Putative metal-dependen 46.7 12 0.00043 34.2 3.3 48 160-208 183-230 (235)
23 2p4z_A Metal-dependent hydrola 46.5 17 0.00058 34.2 4.3 50 166-218 235-284 (284)
24 4fle_A Esterase; structural ge 33.6 45 0.0015 28.2 4.7 33 180-212 3-41 (202)
25 3g1p_A Protein PHNP; C-P lyase 32.9 36 0.0012 31.1 4.1 54 162-218 198-251 (258)
26 3h3e_A Uncharacterized protein 32.5 94 0.0032 29.4 7.1 49 168-219 218-266 (267)
27 1ei9_A Palmitoyl protein thioe 26.6 41 0.0014 31.4 3.3 36 179-214 5-47 (279)
28 2gak_A Beta-1,6-N-acetylglucos 25.1 38 0.0013 33.9 2.9 54 158-211 87-143 (391)
29 3jxp_A Coenzyme PQQ synthesis 22.9 36 0.0012 32.9 2.2 58 163-220 245-307 (321)
30 3oiy_A Reverse gyrase helicase 21.8 2.6E+02 0.0089 26.7 8.3 47 165-213 239-285 (414)
No 1
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=3.5e-53 Score=436.31 Aligned_cols=214 Identities=30% Similarity=0.505 Sum_probs=197.7
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhc----CCCCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY----NAFDFK 76 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~----npF~f~ 76 (423)
|.+++++||+||||+||+||+|||+++|+++|++. .++|||+|||||.+++++|+.+.+|+++++++.+ |||.|+
T Consensus 208 i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~~-~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~ 286 (431)
T 3iek_A 208 LEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRL-PRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPA 286 (431)
T ss_dssp HHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGGS-CCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCTTCCT
T ss_pred HHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHhc-cCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCC
Confidence 35678999999999999999999999999999883 3899999999999999999999999999987654 899999
Q ss_pred cccccc---c--ccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeeecCeEEE
Q 043917 77 NVHNFD---R--SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKID 151 (423)
Q Consensus 77 ~v~~~~---~--~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~ 151 (423)
+++.++ + .++..++||||||+||||++|++++||++|++||+|+|+|||||++||+||+|++|++.|++.|+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~~v~~~g~~~~ 366 (431)
T 3iek_A 287 GLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVP 366 (431)
T ss_dssp TEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCSEEEETTEEEE
T ss_pred CeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCcEEEECCEEEE
Confidence 986443 2 24557899999999999999999999999999999999999999999999999999989999999999
Q ss_pred EeeeEEEE-ecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 152 VRCQIHQL-AFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 152 Vr~~V~~i-~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
|+|+|+++ +||||||+++|++|++.++ +|||||||+++++.|+++|+++++ +|++|++||++++
T Consensus 367 v~a~v~~~~~~saHad~~~l~~~~~~~~--~v~lvHge~~~~~~l~~~l~~~~~-~~~~p~~~~~~~~ 431 (431)
T 3iek_A 367 LRASVHTLGGFSGHAGQDELLDWLQGEP--RVVLVHGEEEKLLALGKLLALRGQ-EVSLARFGEGVPV 431 (431)
T ss_dssp CCSEEEECGGGCSSCCHHHHHHHHTTCS--EEEEESSCHHHHHHHHHHHHHTTC-EEEECCTTCCEEC
T ss_pred EEEEEEEECCccccCCHHHHHHHHHhCC--eEEEECCCHHHHHHHHHHHHHhCC-cEEECCCCCEEeC
Confidence 99999999 6999999999999999774 999999999999999999998755 9999999999975
No 2
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=1.1e-48 Score=403.78 Aligned_cols=220 Identities=36% Similarity=0.714 Sum_probs=174.0
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcC--CCccEEEecchHHHHHHHHHHhHHhhhHHHHhhc---CCCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMN--LRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY---NAFDF 75 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~--~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~---npF~f 75 (423)
|++++++||+|+||+||+||+|||+++|+++|++.+ .++|||++||||.+++++|+.+.+|+++.+++.+ |||.|
T Consensus 226 i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 305 (459)
T 2i7t_A 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305 (459)
T ss_dssp HHHHHHTTCEEEEECCSSSSHHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------C
T ss_pred HHHHHHCCCEEEEEecchhHHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhcccCCcCC
Confidence 467889999999999999999999999999998753 2789999999999999999999999999887654 89999
Q ss_pred Cccccccc-ccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeee-ecCeEEEEe
Q 043917 76 KNVHNFDR-SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIE-LEGTKIDVR 153 (423)
Q Consensus 76 ~~v~~~~~-~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~-i~g~~i~Vr 153 (423)
++++.... ..+...+||||||+||||++|++++||++|++||+|+|+|||||++||+||+|++|++.+. +.|+.++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~ 385 (459)
T 2i7t_A 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLK 385 (459)
T ss_dssp CSEEECCCTTSSCCCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECC
T ss_pred CcceeeCCHHHhcCCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCCceeeeeCCcEEEEE
Confidence 98865432 1234679999999999999999999999999999999999999999999999999988765 689999999
Q ss_pred eeEEEEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhC------CeeecCCCCCEEEecC
Q 043917 154 CQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELG------IKCYDPANNESMCIPS 220 (423)
Q Consensus 154 ~~V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g------~~v~~P~~Ge~v~l~~ 220 (423)
|+|++++||+|||+++|++|++.++|++||+||||++++..|++.|+++++ +++++|++||+|+|.+
T Consensus 386 ~~v~~~~~S~Had~~~l~~~i~~~~p~~v~~vHGe~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 458 (459)
T 2i7t_A 386 MSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458 (459)
T ss_dssp SEEEECCCSCCCCHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEE
T ss_pred EEEEEeeecccCCHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHHHHHHhccccccCceEEeCCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999998884 8999999999999875
No 3
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=2.3e-41 Score=364.97 Aligned_cols=216 Identities=35% Similarity=0.603 Sum_probs=194.8
Q ss_pred hhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhc-----CCCCCC
Q 043917 2 HKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETY-----NAFDFK 76 (423)
Q Consensus 2 ~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~-----npF~f~ 76 (423)
.+++++||+||||+||+||+|||+.+|+++|++..+++|||+|| ++.+++.+|..+.+|++..+++.+ +||.+.
T Consensus 417 ~~~l~~~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~ 495 (651)
T 3af5_A 417 HNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSE 495 (651)
T ss_dssp HHHHHTTCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCT
T ss_pred HHHHhCCCEEEEeccCccHHHHHHHHHHHhhhhcCCCCcEEEec-hHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCC
Confidence 46788999999999999999999999999998776679999996 999999999999999999876542 899887
Q ss_pred cccccc---c--ccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeee---cCe
Q 043917 77 NVHNFD---R--SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGT 148 (423)
Q Consensus 77 ~v~~~~---~--~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i---~g~ 148 (423)
++...+ . .++..++|+|||||||||+||+++++|++|++||+|+|+|+|||++||+||+|.+|...+++ .|.
T Consensus 496 ~~~~v~~~~~~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~ 575 (651)
T 3af5_A 496 IFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGR 575 (651)
T ss_dssp TEEECCSHHHHHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTCSEEEEECGGGC
T ss_pred ceEEcCCHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhccceeeehhcCCC
Confidence 765443 1 12234889999999999999999999999999999999999999999999999998877765 366
Q ss_pred --EEEEeeeEEEEe-cCCCCChHHHHHHHHhcC--CCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 149 --KIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 149 --~i~Vr~~V~~i~-fSaHAD~~~Ll~lI~~l~--P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
.++|+|+|+++. ||||||+++|++|++.++ |++||+||||+..+..|++.+++++|+++++|++||+++|
T Consensus 576 ~~~v~v~~~v~~i~g~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~la~~~~~~~g~~~~~p~~g~~~~l 650 (651)
T 3af5_A 576 TEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTIRL 650 (651)
T ss_dssp EEEEECCSEEEECGGGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred ceEEEeEEEEEEcCcccCcCCHHHHHHHHHHhhcCCCEEEEEcCCHHHHHHHHHHHHHhcCCeEEECCCCCEEEe
Confidence 888999999997 999999999999999998 9999999999999999999998888999999999999986
No 4
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=9.7e-41 Score=359.64 Aligned_cols=217 Identities=29% Similarity=0.534 Sum_probs=181.2
Q ss_pred ChhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhh-----cCCCC
Q 043917 1 VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKET-----YNAFD 74 (423)
Q Consensus 1 I~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~-----~npF~ 74 (423)
|.+++++||+||||+||+||+||++.+|+++|++..+ ++|||+|| |+.+++.+|..+.+|++..+++. .+||.
T Consensus 404 i~~~~~~~g~vlIp~favGR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~ 482 (640)
T 2xr1_A 404 VKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKLIFQKGQNPFL 482 (640)
T ss_dssp C--------CEEEECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHHC------CTT
T ss_pred HHHHHhcCCeEEEEecccchHHHHHHHHHHHHHhCCCCCCcEEEEh-HHHHHHHHHHHhHhhhcHHHHHHHHhcccCccc
Confidence 3456778999999999999999999999999987654 78999996 99999999999999999987654 38998
Q ss_pred CCcccccc---c--ccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeee---c
Q 043917 75 FKNVHNFD---R--SLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---E 146 (423)
Q Consensus 75 f~~v~~~~---~--~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i---~ 146 (423)
|.++...+ . .++..++|+|||||+|||+||+++++|++|++||+|+|+|+|||++||+||+|.+|...+++ .
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~ 562 (640)
T 2xr1_A 483 SECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKN 562 (640)
T ss_dssp CTTEEEEC-CHHHHHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCCC-------
T ss_pred CCceEEeCCHHHHHHHhcCCCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccceeeeeccC
Confidence 88766443 1 12234789999999999999999999999999999999999999999999999998876665 3
Q ss_pred Ce--EEEEeeeEEEEe-cCCCCChHHHHHHHHhcC--CCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 147 GT--KIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 147 g~--~i~Vr~~V~~i~-fSaHAD~~~Ll~lI~~l~--P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
|. .++|+|+|+++. ||||||+++|++|++.++ |++||+||||+..+..|++.+++++|+++++|++|++++|
T Consensus 563 G~~~~v~v~~~v~~i~g~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 639 (640)
T 2xr1_A 563 GSTEMLKMNMEVQVVDGFSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETVRL 639 (640)
T ss_dssp ----CCCCCSEEEECCCCSCSCCHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEEECCTTCEEEC
T ss_pred CCceEEeeeEEEEEEccccccCCHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCCeEEeCCCCCEEEe
Confidence 66 788999999997 999999999999999998 9999999999999999999998788999999999999986
No 5
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.6e-40 Score=353.22 Aligned_cols=216 Identities=33% Similarity=0.543 Sum_probs=192.1
Q ss_pred hhhhcCCCeEEEccCchhHHHHHHHHHHHHHHhcCC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhh-----cCCCCC
Q 043917 2 HKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKET-----YNAFDF 75 (423)
Q Consensus 2 ~~tl~~GG~VLIPvFALGRaQELL~lL~~~w~~~~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~-----~npF~f 75 (423)
.+++++||+||||+||+||+|||+++|+++|+...+ ++|||+|| ++.+++.+|..+.+|++..+++. .+||.|
T Consensus 402 ~~~~~~~g~vlIp~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~ 480 (636)
T 2ycb_A 402 YSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQIFHMGHNPFIS 480 (636)
T ss_dssp HHHHHHTCCEEEECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGC
T ss_pred HHHHHcCCEEEEEECCCcHHHHHHHHHHHHHHhCCCCCCeEEEeh-HHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccC
Confidence 456678999999999999999999999999986554 78999995 99999999999999999887653 388987
Q ss_pred Ccccccc---cc-cccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCcccccccCCCeeee---cCe
Q 043917 76 KNVHNFD---RS-LIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIEL---EGT 148 (423)
Q Consensus 76 ~~v~~~~---~~-~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i---~g~ 148 (423)
+++...+ +. ....++|+|||||+|||+||+++++|++|++||+|+|+|+|||++||+||+|.+|...+++ .|.
T Consensus 481 ~~~~~~~~~~~~~~l~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~ 560 (636)
T 2ycb_A 481 DIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDK 560 (636)
T ss_dssp TTEEEECCHHHHHHHHHSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTTCCEEEEECSSSC
T ss_pred CceEEeCCHHHHHHhccCCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhcCCceeeeeccCCc
Confidence 7765433 11 1223789999999999999999999999999999999999999999999999998877765 377
Q ss_pred --EEEEeeeEEEEe-cCCCCChHHHHHHHHhcC--CCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 149 --KIDVRCQIHQLA-FSPHTDGKGIMDLVKFLS--PQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 149 --~i~Vr~~V~~i~-fSaHAD~~~Ll~lI~~l~--P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
.++++|+|++++ ||||||+++|++|++.++ |++||+||||+..+..|++.+++++|+++++|++||+++|
T Consensus 561 ~~~v~v~~~v~~i~~~SgHad~~eL~~~i~~~~~~Pk~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 635 (636)
T 2ycb_A 561 MRVYNVRMNIKTIEGFSGHSDRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635 (636)
T ss_dssp EEEEECCSEEEECCSCCSSCCHHHHHHHHHSCSSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred eeEEEeEEEEEEECCcceeCCHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEeCCCCCEEEe
Confidence 889999999997 999999999999999998 9999999999999999999998888999999999999986
No 6
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.95 E-value=1.2e-27 Score=260.99 Aligned_cols=134 Identities=20% Similarity=0.326 Sum_probs=112.5
Q ss_pred hhhhcCCCeEEEccCchhHHHHHHHHHHHHH-H--h-cCC-CccEEEecchHHHHHHHHHHhHHhhhHHHHhhc------
Q 043917 2 HKCVAGGGKVLIPAFALGRAQELCILLDDYW-E--R-MNL-RVPIYFSAGLTIQANMYYKMLISWTSQKVKETY------ 70 (423)
Q Consensus 2 ~~tl~~GG~VLIPvFALGRaQELL~lL~~~w-~--~-~~~-~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~------ 70 (423)
.+++++||+||||+||+||+|||+++|+++| + + ..+ ++|||++|+++.+++++|+.+.+||++.+++.+
T Consensus 235 ~~~l~~~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~~~~~ 314 (717)
T 2i7x_A 235 KKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNT 314 (717)
T ss_dssp HHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSC
T ss_pred HHHHhCCCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHHHHhccccc
Confidence 4678899999999999999999999999998 3 2 222 789999999999999999999999998876554
Q ss_pred CCCC-CCcccccc-cccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccC-CCCccccccc
Q 043917 71 NAFD-FKNVHNFD-RSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCL-AGTIGNKLMS 138 (423)
Q Consensus 71 npF~-f~~v~~~~-~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~-eGTlGr~Ll~ 138 (423)
+||. |++++..+ +.+...++|+||+|| | +||+++++|++|++||+|+|||||||+ +||+||+|++
T Consensus 315 ~pf~~~~~l~~~~~~~l~~~~~p~VI~aS-G--~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~ 382 (717)
T 2i7x_A 315 SPFEIGSRIKIIAPNELSKYPGSKICFVS-E--VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILE 382 (717)
T ss_dssp CTTCCTTTEEECCGGGGGGCCSCEEEEEE-S--CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHH
T ss_pred CCccccccCccCCHHHHhhCCCCEEEEEC-C--CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHh
Confidence 2898 78875322 234555779988875 4 899999999999999999999999999 7999999874
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.85 E-value=1.2e-21 Score=208.07 Aligned_cols=192 Identities=12% Similarity=0.192 Sum_probs=144.8
Q ss_pred hhhhcC-CCeEEEccCc--hhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhcCCCCCCcc
Q 043917 2 HKCVAG-GGKVLIPAFA--LGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAFDFKNV 78 (423)
Q Consensus 2 ~~tl~~-GG~VLIPvFA--LGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~npF~f~~v 78 (423)
.+++++ +|+|+||+|| +||+||++.++.++ +.+||++++...+++.+|+.+ .+++ .|.. .+
T Consensus 216 ~~~~~~~~grvii~~fasnv~R~q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~-g~l~-------~p~~--~~ 279 (555)
T 3zq4_A 216 HDIFRKVDGRIIFATFASNIHRLQQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL-GYIN-------CPKN--TF 279 (555)
T ss_dssp HHHHHHCCSCEEEECCTTCHHHHHHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG-GSCC-------CCGG--GE
T ss_pred HHHHHhCCCEEEEEEChhHHHHHHHHHHHHHHH------CCEEEEeCHHHHHHHHHHHHc-CCcc-------CCcc--cE
Confidence 355665 9999999999 99999999999887 669999998888888887765 2221 1110 01
Q ss_pred cccccccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCC--------eEeeccccCCCCccc--ccccCCCeeeecCe
Q 043917 79 HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMN--------LITLPGYCLAGTIGN--KLMSGNPTIELEGT 148 (423)
Q Consensus 79 ~~~~~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN--------~IiltGYq~eGTlGr--~Ll~g~~~I~i~g~ 148 (423)
...++.....+++.||++|++ .|..+.++.+++.++.| +|+|+||+.+|+.+. +++++ +
T Consensus 280 v~~~~~~~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~~~~~---l----- 348 (555)
T 3zq4_A 280 IEHNEINRMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQ---L----- 348 (555)
T ss_dssp ECGGGTTTSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHH---H-----
T ss_pred eCHHHHhhCCCCCEEEEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHHHHHHHHH---H-----
Confidence 111111112346788888887 67789999999999888 999999999998753 12211 1
Q ss_pred EEEEeeeEE-----EEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCC---eeecCCCCCEEEecC
Q 043917 149 KIDVRCQIH-----QLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI---KCYDPANNESMCIPS 220 (423)
Q Consensus 149 ~i~Vr~~V~-----~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~---~v~~P~~Ge~v~l~~ 220 (423)
.+..++|. .+.||+|||+++|..|++.++|+.+|.||||...+..+++ +.++.|+ ++++|+||+.++|..
T Consensus 349 -~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~~~~-~a~~~G~~~~~~~~~~nG~~~~l~~ 426 (555)
T 3zq4_A 349 -YRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVK-LATDCGIPEENCFIMDNGEVLALKG 426 (555)
T ss_dssp -HHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESBCHHHHHHHHH-HHHHTTCCGGGBCCCCTTCEEEEET
T ss_pred -HHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH-HHHHcCCCcccEEEccCCCEEEEeC
Confidence 11123333 4689999999999999999999999999999999999998 4556787 799999999999965
Q ss_pred cc
Q 043917 221 TH 222 (423)
Q Consensus 221 ~~ 222 (423)
..
T Consensus 427 ~~ 428 (555)
T 3zq4_A 427 DE 428 (555)
T ss_dssp TE
T ss_pred CC
Confidence 43
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.84 E-value=3.8e-21 Score=204.14 Aligned_cols=186 Identities=14% Similarity=0.179 Sum_probs=132.6
Q ss_pred CCCeEEEccCc--hhHHHHHHHHHHHHHHhcCCCccEEEe-cchHHHHHHHHHHhHHhhhHHHHhhcCCCCCCccccccc
Q 043917 7 GGGKVLIPAFA--LGRAQELCILLDDYWERMNLRVPIYFS-AGLTIQANMYYKMLISWTSQKVKETYNAFDFKNVHNFDR 83 (423)
Q Consensus 7 ~GG~VLIPvFA--LGRaQELL~lL~~~w~~~~~~vPIyvd-S~ma~~~~~~y~~~~~~~~~~i~~~~npF~f~~v~~~~~ 83 (423)
.+|+|+||+|| +||+||++..+.++ +.|||++ ++|+ +++++|+.+ +|++. .++|.. . +
T Consensus 238 ~~grvii~~fas~~~r~q~il~~a~~~------~r~V~v~g~s~~-~~~~~~~~~-g~l~~-----~~~~i~-----~-~ 298 (562)
T 3bk2_A 238 APGRVFVTTFASHIHRIQSVIWAAEKY------GRKVAMEGRSML-KFSRIALEL-GYLKV-----KDRLYT-----L-E 298 (562)
T ss_dssp CSSCEEEECCTTCHHHHHHHHHHHHHT------TCEEEEECHHHH-HHHHHHHHT-TSCCC-----SSCCBC-----T-G
T ss_pred CCCEEEEEEccccchHHHHHHHHHHHh------CCEEEEEChHHH-HHHHHHHhc-CcccC-----CCCccC-----H-H
Confidence 68999999999 99999999998876 4489984 4454 677777754 44431 123211 0 1
Q ss_pred cccc-CCCCeEEEECCCCCCcccHHHHHHHhC--------CCCCCeEeeccccCCCCcccccccCCCeeeecCeEEEEee
Q 043917 84 SLID-APGPCVLFATPGMLTGGFSLEVFKHWA--------PSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRC 154 (423)
Q Consensus 84 ~~~~-~~~P~VIiAssGML~~G~S~~~~~~~~--------~d~kN~IiltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~ 154 (423)
.+.. .++++||++|++| |+ ....+.+++ .+++|+|+|+||+.+||.++.. ++.+....+.|
T Consensus 299 ~~~~~~~~~~vi~~tg~~--ge-~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~~~-------~~~~~l~~~g~ 368 (562)
T 3bk2_A 299 EVKDLPDHQVLILATGSQ--GQ-PMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVN-------RVINRLYALGA 368 (562)
T ss_dssp GGTTSCGGGEEEEECCTT--SC-SHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHHHH-------HHHHHHHHTTC
T ss_pred HHhcCCCCCEEEEEcCCC--ch-hHHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEehh-------hhcCceeeCCC
Confidence 2222 2456777777664 33 333456554 4899999999999999976421 11111112223
Q ss_pred eE-----EEEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCC---eeecCCCCCEEEecCcc
Q 043917 155 QI-----HQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGI---KCYDPANNESMCIPSTH 222 (423)
Q Consensus 155 ~V-----~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~---~v~~P~~Ge~v~l~~~~ 222 (423)
+| ..+.||+|||+++|++|++.++|++||+||||...+..+++.+++ .|+ ++++|+||+.++|....
T Consensus 369 ~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~~~~-~g~~~~~~~~~~~G~~~~l~~~~ 443 (562)
T 3bk2_A 369 YVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAES-MSRPPEKTLIGENGAVYRLTRET 443 (562)
T ss_dssp EEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCHHHHHHHHHHHHT-SSSCCSEECCCCTTEEEEECSSC
T ss_pred EEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHH-cCCCcceEEECCCCCEEEEeCCC
Confidence 33 346799999999999999999999999999999999999976654 687 79999999999998654
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.43 E-value=3.9e-14 Score=144.04 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=113.5
Q ss_pred hhhcC-CCeEEEccCc---hhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhcCCCCCCcc
Q 043917 3 KCVAG-GGKVLIPAFA---LGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAFDFKNV 78 (423)
Q Consensus 3 ~tl~~-GG~VLIPvFA---LGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~npF~f~~v 78 (423)
+++++ +|+++||.|+ ++|.|++ +. +. +.|||++++++..++.+|.....++..... ....+.-..+
T Consensus 246 ~~~~~~~~rlil~h~~~~~~~r~~~~---a~----~~--gr~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 315 (429)
T 2az4_A 246 RLELENPNRQITFNGYPANVERFAKI---IE----KS--PRTVVLEANMAALLLEVFGIEVRYYYAESG-KIPELNPALE 315 (429)
T ss_dssp HHHHTCSSSCEEEEECTTCHHHHHHH---HH----HC--SSEEEEEHHHHHHHHHHHCCCCEEECSSSS-CCTTSCGGGB
T ss_pred HHHHhCCCcEEEEEeccchHHHHHHH---HH----Hh--CCEEEEEChhHHHHHhhccccCeeEecccc-cccccCccce
Confidence 34444 4669999999 8999999 22 22 459999999988888776211111110000 0000000001
Q ss_pred cccccccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEeeccccCCCCc---ccccccCCCeeeecCeEEEEeee
Q 043917 79 HNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTI---GNKLMSGNPTIELEGTKIDVRCQ 155 (423)
Q Consensus 79 ~~~~~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~IiltGYq~eGTl---Gr~Ll~g~~~I~i~g~~i~Vr~~ 155 (423)
... +.+...+++.||+ | +|+ +. ++ .+.+.|+|++++.+|+. +.+++++- ..+.|+
T Consensus 316 ~~~-~~~~~~~~~~ii~----~--~~~--~~--~l--~~~~~vi~s~~~~~g~~~~~~~~~~~~~---------~~~~~~ 373 (429)
T 2az4_A 316 IPY-DTLLKDKTDYLWQ----V--VNQ--FD--NL--QEGSLYIHSDAQPLGDFDPQYRVFLDLL---------AKKDIT 373 (429)
T ss_dssp CCH-HHHHHCSSSEEEE----C--CSC--GG--GS--CTTCEEEEESCSSCSTTSHHHHHHHHHH---------HHTTCE
T ss_pred ecH-HHHhhCCCcEEEE----e--cCc--HH--hh--CCCCEEEEeCCCCCcccchHHHHHHHHH---------HhCCCE
Confidence 011 2233346666665 3 444 21 33 33588999999998884 34444321 233456
Q ss_pred EEEEecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 156 IHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 156 V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
|..+.+|+|||+++|++|++.++|+.||.||||...+.. ..+.++++|++|+.++|
T Consensus 374 v~~i~~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~-------~~~~~~~~~~~g~~~~l 429 (429)
T 2az4_A 374 FVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLE-------NPYGERILPERGEQIVL 429 (429)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHCCSEEEEESCSCGGGCC-------CTTSEECCCCTTCEEEC
T ss_pred EEEEeecCCCCHHHHHHHHHhhCCCEEEECCCCchhhhh-------cCCCcEEEeCCCcEEeC
Confidence 668899999999999999999999999999999874433 45789999999999875
No 10
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=98.66 E-value=6.8e-08 Score=97.64 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=94.4
Q ss_pred hhhcCCCeE--EEccCchhHHHHHHHHHHHHHHhcCCCccEEEecchHHHHHHHHHHhHHhhhHHHHhhcCCCCCCcccc
Q 043917 3 KCVAGGGKV--LIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAFDFKNVHN 80 (423)
Q Consensus 3 ~tl~~GG~V--LIPvFALGRaQELL~lL~~~w~~~~~~vPIyvdS~ma~~~~~~y~~~~~~~~~~i~~~~npF~f~~v~~ 80 (423)
++++++|++ ++|+|++||+|+++.+++++ +.+|+++. ...+. ++.+ ++. .+...+ .
T Consensus 191 ~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~------g~ki~v~~-~~~~i---l~~l-~~~--~~~~~~---------t 248 (367)
T 4b87_A 191 EAVTLNPHALVVCGTYSIGKEKVFLAIADVL------GSKVGMSQ-EKYKT---LQCL-NIP--EINSLI---------T 248 (367)
T ss_dssp HHHHHCTTEEEEEEESSSCCHHHHHHHHHHT------TCCEECCH-HHHHH---HHTT-CCT--THHHHE---------E
T ss_pred HHHHhCCCeEEEEccchhHHHHHHHHHHHHh------CCEEEEeH-HHHHH---HHhc-CCc--hhhhhc---------c
Confidence 445567765 58999999999999999987 78999973 22222 2211 110 011000 0
Q ss_pred cccccccCCCCeEEEECCCCCCcccHHHHHHHhCCCCCCeEe--eccccCCCCcccccccCCCeeeecCeEEEEeeeEEE
Q 043917 81 FDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLIT--LPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQ 158 (423)
Q Consensus 81 ~~~~~~~~~~P~VIiAssGML~~G~S~~~~~~~~~d~kN~Ii--ltGYq~eGTlGr~Ll~g~~~I~i~g~~i~Vr~~V~~ 158 (423)
.+ .....|-+.+.+.+....-..|+.+..++-...|- =|||.-.+... .+-+-.+ .. .-++.+..
T Consensus 249 ~d-----~~~~~vh~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~~-~~~~~~~--~~-----~~~~~~~~ 315 (367)
T 4b87_A 249 TD-----MCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFT-RIADVIP--QT-----KGNISIYG 315 (367)
T ss_dssp SC-----GGGCSEEEEEGGGCSHHHHHHHHHSGGGCCCEEEEEEECC-----------CCCCC--EE-----ETTEEEEE
T ss_pred cC-----CccceEEEeecCcCCHHHHHHHHHHhhcccccEEEEcCcccccCCCCC-ccccccc--cc-----CCceEEEE
Confidence 00 11234556655555555555677766655555443 46876543210 0100001 01 11346778
Q ss_pred EecCCCCChHHHHHHHHhcCCCEEEEec--CChhHHHHHHHHHH
Q 043917 159 LAFSPHTDGKGIMDLVKFLSPQHVILVH--GEKPKMATLKERIQ 200 (423)
Q Consensus 159 i~fSaHAD~~~Ll~lI~~l~P~~ViLVH--Ge~~~~~~L~~~L~ 200 (423)
+++|.||++.+|.+|+..++|++||=+| |.+++.+.+..+++
T Consensus 316 vpySeHss~~EL~~fv~~l~p~~iiptv~~~~~~~~~~m~~~~~ 359 (367)
T 4b87_A 316 IPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFR 359 (367)
T ss_dssp ECCCSSCCHHHHHHHHHHHCCSEEEECSSCSSHHHHHHHHHHHH
T ss_pred EeccCCCCHHHHHHHHHhcCCCeEECeecCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999 56666655555543
No 11
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=98.21 E-value=1.1e-06 Score=87.71 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred EEEEecCCCCChHHHHHHHHhcCCCEEEEec-CChh
Q 043917 156 IHQLAFSPHTDGKGIMDLVKFLSPQHVILVH-GEKP 190 (423)
Q Consensus 156 V~~i~fSaHAD~~~Ll~lI~~l~P~~ViLVH-Ge~~ 190 (423)
+..+.+|+||++.+|.++++.++|+.|+=|| ||..
T Consensus 269 ~~~vh~S~Ha~~~EL~~~~~~~~P~~~iPvh~ge~~ 304 (336)
T 3zdk_A 269 IHVIPYSDHSSYSELRAFVAALKPCQVVPIVSRRPC 304 (336)
T ss_dssp EEEECCCSSCBHHHHHHHHHHHCCSCEEESCTTSCC
T ss_pred ceeeEecCCCCHHHHHHHHHHhCCCEEEEEECCcCc
Confidence 4568999999999999999999999999999 9963
No 12
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=92.02 E-value=0.27 Score=46.09 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCCh-----hHHHHHHHHHHHHhCC--eeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEK-----PKMATLKERIQSELGI--KCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~-----~~~~~L~~~L~~~~g~--~v~~P~~Ge~v~l 218 (423)
..|.+..+..++++.++|++++++|=+. ...+.|++.+++ .|+ ++.+|+.||+++|
T Consensus 202 ~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~Ge~~~l 264 (264)
T 3rpc_A 202 SIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKG-NNIESHVAVPEDGETITL 264 (264)
T ss_dssp CSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHHHHHHH-TTCTTTEECCCTTCEEEC
T ss_pred CcccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHHHHHHH-cCCCCcEEecCCCCEEeC
Confidence 5699999999999999999999999753 456788888875 455 7999999999875
No 13
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=91.36 E-value=0.35 Score=47.66 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh-----HHHHHHHHHHHH-----hCCeeecCCCCCEEEecCcc
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP-----KMATLKERIQSE-----LGIKCYDPANNESMCIPSTH 222 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~-----~~~~L~~~L~~~-----~g~~v~~P~~Ge~v~l~~~~ 222 (423)
..|.+..+..++++.++|+.++++|.+.- ..+.+++.++++ ++.++++|+.|++++++.+.
T Consensus 257 ~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~~d~ 327 (360)
T 2wyl_A 257 TDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDK 327 (360)
T ss_dssp CCSBCHHHHHHHHHHHTCSEEEEESTTTBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEETTTT
T ss_pred cCCCCHHHHHHHHHHhCCCEEEEEeeccccccCCCHHHHHHHHHhhhhhhcCCcceEEccCCcEEEecCCC
Confidence 56999999999999999999999997642 245677777632 25689999999999998754
No 14
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=90.04 E-value=0.45 Score=47.38 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=49.1
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh-----HHHHHHHHHHHH-----hCCeeecCCCCCEEEecCcc
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP-----KMATLKERIQSE-----LGIKCYDPANNESMCIPSTH 222 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~-----~~~~L~~~L~~~-----~g~~v~~P~~Ge~v~l~~~~ 222 (423)
..|.+..+..++++.++|+.++++|.+.- ..+.+++.++.+ ++.++++|+.|++++++.+.
T Consensus 282 ~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~d~ 352 (379)
T 3bv6_A 282 TDKMTSSDVLRAAESLDCQVVVPFHHDIWANFQNDPREIEVLWNMKKDRLQYQFAPFFWQVGGKYTYPTDK 352 (379)
T ss_dssp CCSBCHHHHHHHHHHHTCSEEEEESTTSBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEETTTT
T ss_pred cccCCHHHHHHHHHHcCCCEEEEEeecccccccCCHHHHHHHHHhhhhhhcCCCceEEccCCcEEEecCCC
Confidence 56999999999999999999999996642 345677777632 24689999999999998654
No 15
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=84.16 E-value=1.4 Score=40.80 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHhcCCCEEEEecCCh-hHHHHHHHHHHHHhCCeeecCCCCCEEE
Q 043917 163 PHTDGKGIMDLVKFLSPQHVILVHGEK-PKMATLKERIQSELGIKCYDPANNESMC 217 (423)
Q Consensus 163 aHAD~~~Ll~lI~~l~P~~ViLVHGe~-~~~~~L~~~L~~~~g~~v~~P~~Ge~v~ 217 (423)
+|....+..++++..+|+++++.|-.+ ...+.+.+++++.++-++.++..|++++
T Consensus 212 ~H~~~~~a~~~~~~~~~~~lil~H~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~~~ 267 (268)
T 1zkp_A 212 GHMNSTEVASIAKDANVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWN 267 (268)
T ss_dssp TCCBHHHHHHHHHHTTCSEEEEESBCSSSCTHHHHHHHHTTCCSEEEECCTTCEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECCCCCCChHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 499999999999999999999999655 3345566777766666788999998874
No 16
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=83.21 E-value=2.7 Score=38.66 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChhH---HHHHHHHHHHHh-CCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKPK---MATLKERIQSEL-GIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~---~~~L~~~L~~~~-g~~v~~P~~Ge~v~l 218 (423)
..|....+..++++++++++++|+|=.+.. .+.+.+++++.+ |.++.++..|++++|
T Consensus 220 ~~H~t~~~a~~~~~~~~~~~lvl~H~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~G~~~~~ 280 (280)
T 2e7y_A 220 KNHAAIDEVMESVKAAGVKKVILYHISTRYIRQLKSVIKKYREEMPDVEILYMDPRKVFEM 280 (280)
T ss_dssp -CCCBHHHHHHHHHHHTCCEEEEESCCGGGHHHHHHHHHHHHHHCTTSEEEECCTTSCEEC
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeecCcCcchHHHHHHHHHHhCCCceEEEeCCCceeeC
Confidence 579999999999999999999999976633 344555555554 578999999998875
No 17
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=77.43 E-value=4.6 Score=38.26 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh----HHHHHHHHHHHHhCCeeecCCCCCEEEecC
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP----KMATLKERIQSELGIKCYDPANNESMCIPS 220 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~----~~~~L~~~L~~~~g~~v~~P~~Ge~v~l~~ 220 (423)
..|....+..++++++++++++|+|=++. ..+.+.+++++.+. ++.++..|++++|+.
T Consensus 245 ~~H~t~~~a~~~a~~~~~~~lil~H~s~~~~~~~~~~~~~e~~~~~~-~~~~a~dg~~~~l~~ 306 (320)
T 1y44_A 245 YYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFP-NSVAAYDFLEVNVPR 306 (320)
T ss_dssp TTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHHHCS-SEEECCTTCEEECCC
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeEcCCCCCcchHHHHHHHHHhCC-CcEeccCCCEEEecc
Confidence 56999999999999999999999995542 23556666665543 689999999999975
No 18
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=70.41 E-value=7.9 Score=36.18 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=42.2
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChhH----HHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKPK----MATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~----~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
..|....+..++++++++++++|+|=++.. .+.+.++.++.+. ++.++..|.+++|
T Consensus 247 ~~H~t~~~a~~~a~~~~~~~lvl~H~s~~~~~~~~~~~~~e~~~~~~-~~~~a~Dg~~~~~ 306 (306)
T 2cbn_A 247 RGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFNV 306 (306)
T ss_dssp TTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTTCS-CEEECCTTCEEEC
T ss_pred cCCCCHHHHHHHHHHcCCcEEEEEeecCCCCCCchhHHHHHHHHhCC-CcEEcccccEeeC
Confidence 569999999999999999999999965532 2345555554433 6888888888764
No 19
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=68.17 E-value=7.3 Score=36.73 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=43.5
Q ss_pred cCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEec
Q 043917 161 FSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219 (423)
Q Consensus 161 fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l~ 219 (423)
-..|.+..+..+++++++|++++|+|=++... .+.+.+++.-.+.+..-|.+++|+
T Consensus 237 ~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~---~~~~~~~~~~~v~~a~DG~~i~l~ 292 (293)
T 3md7_A 237 HPSHFSLGEALEWIEKLSPKRAILTHMHVPLD---YETVMRETPHHVEPGYDGLRFEVA 292 (293)
T ss_dssp BTTBCCHHHHHHHHHHHCCSEEEEESBCTTCC---HHHHHHHSCTTEEECCTTCEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEECCCCCCC---HHHHHhhcCCCcEEeeCCcEEEec
Confidence 46799999999999999999999999655321 123444555678889999999875
No 20
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=52.33 E-value=11 Score=34.42 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=24.0
Q ss_pred EEEEecC---ChhHHHHHHHHHHHHhCCeeecCCC
Q 043917 181 HVILVHG---EKPKMATLKERIQSELGIKCYDPAN 212 (423)
Q Consensus 181 ~ViLVHG---e~~~~~~L~~~L~~~~g~~v~~P~~ 212 (423)
-|+|+|| ....+..+++.|.+ .|+.|++|..
T Consensus 53 ~VlllHG~~~s~~~~~~la~~La~-~Gy~Via~Dl 86 (281)
T 4fbl_A 53 GVLVSHGFTGSPQSMRFLAEGFAR-AGYTVATPRL 86 (281)
T ss_dssp EEEEECCTTCCGGGGHHHHHHHHH-TTCEEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-CCCEEEEECC
Confidence 4899998 45567788888875 4899998864
No 21
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=50.48 E-value=17 Score=35.90 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChh-------------HHHHHHHHHHHHh-CCeeecCCCCCEEEecCcc
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKP-------------KMATLKERIQSEL-GIKCYDPANNESMCIPSTH 222 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~-------------~~~~L~~~L~~~~-g~~v~~P~~Ge~v~l~~~~ 222 (423)
..|....+..++.+.+++++++|+|=.+. ..+.|.++.++.+ |.++++++.|++++|+...
T Consensus 287 ~~H~t~~~A~~~a~~~~~k~lil~H~s~ry~~~~~~~~~~~~~~~~~~~ea~~~f~~~~~~~a~dg~~~~i~~~~ 361 (368)
T 3zwf_A 287 HGHSTPQMAATFAKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVISIPIKK 361 (368)
T ss_dssp TTCCCHHHHHHHHHHTTCSEEEEECBCCCC---------------------------CEEEECCTTCEEECCC--
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeeCcccCccccccccccchHHHHHHHHHHhcCCCceEEecCCcEEEeecCc
Confidence 45999999999999999999999995443 2345666666555 3479999999999997643
No 22
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=46.73 E-value=12 Score=34.18 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=38.1
Q ss_pred ecCCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeee
Q 043917 160 AFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCY 208 (423)
Q Consensus 160 ~fSaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~ 208 (423)
+-..|.+..+..++++.++|+.++++|=.....+.|++.+++ .|+++.
T Consensus 183 ~~~~h~~~~ea~~~~~~l~~k~vip~H~~~~~~~~~~~~l~~-~gi~v~ 230 (235)
T 3kl7_A 183 NQPYTMTVSQAAKAARMFSPKILYPYHYGDTKIGELKDALKD-SGIDVR 230 (235)
T ss_dssp CTTTSCCHHHHHHHHHHHCCSEEEEESCTTCCTTHHHHHTTT-SCCEEC
T ss_pred CCCcccCHHHHHHHHHHcCCCEEEEEcCCCCCHHHHHHHHhh-CCCEEE
Confidence 346799999999999999999999999655666778877764 465544
No 23
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=46.50 E-value=17 Score=34.24 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=37.2
Q ss_pred ChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 166 DGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 166 D~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
...+..+++++.+|+++++.|..+... .+++++.++-++.....|.++++
T Consensus 235 ~~~~a~~~~~~~~~~~l~l~H~~~~~~---~~~~~~~~~~~v~~a~~G~~i~l 284 (284)
T 2p4z_A 235 KVKDIARKIEEYGVKKVLTGHCTGIDE---YGFLKSVLKDKISYLTTSSSIVV 284 (284)
T ss_dssp HHHHHHHHHHHTTBCCEEECGGGCHHH---HHHHHHHHGGGEEECCTTCEEEC
T ss_pred HHHHHHHHHHcCCCCEEEeeCcCcHHH---HHHHHHHhCCCEEEcCCCcEEeC
Confidence 577888899999999999999887532 33555566556777777877764
No 24
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=33.63 E-value=45 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred CEEEEecCC---h--hHHHHHHHHHHHH-hCCeeecCCC
Q 043917 180 QHVILVHGE---K--PKMATLKERIQSE-LGIKCYDPAN 212 (423)
Q Consensus 180 ~~ViLVHGe---~--~~~~~L~~~L~~~-~g~~v~~P~~ 212 (423)
+.|+++||- + .+...|++.+.+. .+++|+.|..
T Consensus 3 ptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl 41 (202)
T 4fle_A 3 STLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQL 41 (202)
T ss_dssp CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCC
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCC
Confidence 468899992 2 2356678877654 2578888864
No 25
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=32.93 E-value=36 Score=31.12 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCCCChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEe
Q 043917 162 SPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCI 218 (423)
Q Consensus 162 SaHAD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l 218 (423)
..|.+..+..++++.++|++++++|=.+..-. ..+...+.-++....-|.++++
T Consensus 198 ~~H~~~~~a~~~~~~~~~k~lil~H~s~~~~~---~~~~~~~~~~v~~a~Dg~~~~~ 251 (258)
T 3g1p_A 198 RNHCDLNTVLALNQVIRSPRVILTHISHQFDA---WLMENALPSGFEVGFDGMEIGV 251 (258)
T ss_dssp SSSCBHHHHHHHHHHHCCSCEEEESCCHHHHH---HHTTCCCCTTEEECCTTEEEC-
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEECccCccch---hhhhhhCCCCeEEccCCCEEee
Confidence 47999999999999999999999997765422 1222223334555556655554
No 26
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=32.49 E-value=94 Score=29.39 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCCCEEEec
Q 043917 168 KGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIP 219 (423)
Q Consensus 168 ~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~Ge~v~l~ 219 (423)
+++++++++++|+++++.|=.... ....|+++++-++.....|.++++.
T Consensus 218 ~~tl~~l~~~~~~~i~~~HCTg~~---a~~~L~~~lp~~v~~~~~G~~iei~ 266 (267)
T 3h3e_A 218 EKIVKAFNELGVETVVPCHCTGER---AVDIFKREFLGKIMDCYAGLKLEVS 266 (267)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCHH---HHHHHHHHCSSEECCCCTTCEEEEC
T ss_pred HHHHHHHHhcCCCEEEEECCCCHH---HHHHHHHHCCCCEEEecCceEEEeC
Confidence 456677788899999999955331 2445666677777777888888874
No 27
>1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A
Probab=26.62 E-value=41 Score=31.38 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=26.4
Q ss_pred CCEEEEecCCh------hHHHHHHHHHHHHh-CCeeecCCCCC
Q 043917 179 PQHVILVHGEK------PKMATLKERIQSEL-GIKCYDPANNE 214 (423)
Q Consensus 179 P~~ViLVHGe~------~~~~~L~~~L~~~~-g~~v~~P~~Ge 214 (423)
+.-|+|+||-. .....+++.|.+.+ |+.|+.+..|.
T Consensus 5 ~~pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~G~ 47 (279)
T 1ei9_A 5 PLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGK 47 (279)
T ss_dssp SCCEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSS
T ss_pred CCcEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 44599999943 34678888998766 78898886543
No 28
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=25.06 E-value=38 Score=33.88 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=38.6
Q ss_pred EEecCCCCChHHHHHHHHhc-CCCEEEEecCChhHHHHHHHHHHHH--hCCeeecCC
Q 043917 158 QLAFSPHTDGKGIMDLVKFL-SPQHVILVHGEKPKMATLKERIQSE--LGIKCYDPA 211 (423)
Q Consensus 158 ~i~fSaHAD~~~Ll~lI~~l-~P~~ViLVHGe~~~~~~L~~~L~~~--~g~~v~~P~ 211 (423)
-|-|.+|.|...+.++++.+ .|+++|+||=++.+-..+.+.+.+. .-.+|+++.
T Consensus 87 Aflil~h~d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~ 143 (391)
T 2gak_A 87 AYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVAS 143 (391)
T ss_dssp EEEEEECSCHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECS
T ss_pred EEEEEecCCHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEec
Confidence 35577899999999999977 7999999999887655565554321 113566553
No 29
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=22.86 E-value=36 Score=32.89 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCChH---HHHHHHHhcCCCEEEEecCChhH--HHHHHHHHHHHhCCeeecCCCCCEEEecC
Q 043917 163 PHTDGK---GIMDLVKFLSPQHVILVHGEKPK--MATLKERIQSELGIKCYDPANNESMCIPS 220 (423)
Q Consensus 163 aHAD~~---~Ll~lI~~l~P~~ViLVHGe~~~--~~~L~~~L~~~~g~~v~~P~~Ge~v~l~~ 220 (423)
+|.... +..++++++++++++|+|=.... .....++.++.+...+....-|.+|++-.
T Consensus 245 gH~s~~~~~eA~~~a~~~~~k~lvLtH~s~~np~l~~~~~e~~~~~~~~v~~A~DGm~i~~~~ 307 (321)
T 3jxp_A 245 GHLAQNGPGGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEVAFDGMSIELLE 307 (321)
T ss_dssp CCCCSSSTTCHHHHHTTCSSSEEEEESBCTTCGGGSTTCHHHHHHHHTTEEECCTTCEEEEC-
T ss_pred cccCCCCHHHHHHHHHhCCCCeEEEEEeCCCCcccccchHHHHHhhcCCcEEecCCcEEEehh
Confidence 688888 99999999999999999954332 22111122222234677888899888754
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=21.81 E-value=2.6e+02 Score=26.75 Aligned_cols=47 Identities=9% Similarity=0.184 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhcCCCEEEEecCChhHHHHHHHHHHHHhCCeeecCCCC
Q 043917 165 TDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANN 213 (423)
Q Consensus 165 AD~~~Ll~lI~~l~P~~ViLVHGe~~~~~~L~~~L~~~~g~~v~~P~~G 213 (423)
.....+.++++....+-+|++.. ....+.+++.|.+ .|+.+...-.|
T Consensus 239 ~~~~~l~~~l~~~~~~~lVF~~~-~~~~~~l~~~L~~-~~~~~~~~~h~ 285 (414)
T 3oiy_A 239 RSKEKLVELLEIFRDGILIFAQT-EEEGKELYEYLKR-FKFNVGETWSE 285 (414)
T ss_dssp CCHHHHHHHHHHHCSSEEEEESS-HHHHHHHHHHHHH-TTCCEEESSSC
T ss_pred CHHHHHHHHHHHcCCCEEEEECC-HHHHHHHHHHHHH-cCCceehhhcC
Confidence 45677888888877777777776 5567788888875 46665533344
Done!