Citrus Sinensis ID: 043917

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---

VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYLKSGSEEKSVSGSKCTEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARMLRDPNKSSLIRLLVAKLSRKLSEGNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAMENRDLVET

cccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHcccccccEEEEEccccccccHHHHHHHHHcccccccEEEEcccccccHHHHHHccccEEECccCEEEEEEEEEEEcccccccHHHHHHHHHHccccCEEEEccccHHHHHHHHHHHHHcccCEEccccccEEEEccccCEEccccHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEccHHHHHHHHccEEEEEEEEEEEEEEcccccHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEECcccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcccccc

VHKCVAGGGKVLIPAFALGRAQELCILLDDYWERMNLRVPIYFSAGLTIQANMYYKMLISWTSQKVKETYNAFDFKNVHNFDRSLIDAPGPCVLFATPGMLTGGFSLEVFKHWAPSEMNLITLPGYCLAGTIGNKLMSGNPTIELEGTKIDVRCQIHQLAFSPHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTHYVKAGASDAFIRSCMNPNFQYL**************TEGTLPLWIKDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFTTTSLTPTARM****NKSSLIRLLVAKLSRKLSEGNIQDFGEHLQVESFHLSVCLKDTCPYRITNGLEDKPRTAFFCCTWSAADDKLARKIISAMENRDL***

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Cleavage and polyadenylation specificity factor subunit 3-II	Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3'-end-processing endonuclease and also be involved in the histone 3'-end pre-mRNA processing.	probable	Q8GUU3

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2I7T, chain A
Confidence level:very confident
Coverage over the Query: 1-44,75-220
View the alignment between query and template
View the model in PyMOL