BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043924
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.1 bits (61), Expect = 2.3, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 97 QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 132 QLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 163
>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
pdb|2ZK7|B Chain B, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
Length = 257
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 72 LDLSFIGNWDLKERYLNASLFTPFQ---QLESLYLEYNNIAGCVENEGIERLSRLSNLKM 128
+DLS + K ++ + P Q ++ ++ EY +I+ V N GIE ++ ++ M
Sbjct: 43 IDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSM 102
>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTD|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTE|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTE|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTX|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
pdb|2DTX|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
Length = 264
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 72 LDLSFIGNWDLKERYLNASLFTPFQ---QLESLYLEYNNIAGCVENEGIERLSRLSNLKM 128
+DLS + K ++ + P Q ++ ++ EY +I+ V N GIE ++ ++ M
Sbjct: 36 IDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSM 95
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 133 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 166
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 128 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 161
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 20 LGGWFVLEPYMTPSLFEPFQ 39
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 20 LGGWFVLEPYMTPSLFEPFQ 39
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 131 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 164
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 133 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 166
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7
A
Length = 399
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 19 LGGWFVLEPYMTPSLFEPFQ 38
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 19 LGGWFVLEPYMTPSLFEPFQ 38
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 20 LGGWFVLEPYMTPSLFEPFQ 39
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 14 LGGWFVLEPYMTPSLFEPFQ 33
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 153 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 186
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 77 IGNWDLKERYLNASLFTPFQ 96
+G W + E Y+ SLF PFQ
Sbjct: 14 LGGWFVLEPYMTPSLFEPFQ 33
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 151 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 184
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 151 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 184
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 131 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 164
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
QLESLYL N I I LSRL+ L L L +N
Sbjct: 151 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLEDN 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,084,482
Number of Sequences: 62578
Number of extensions: 144944
Number of successful extensions: 344
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 36
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)