Query 043924
Match_columns 167
No_of_seqs 305 out of 1870
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 6.7E-21 1.5E-25 161.2 11.9 139 17-166 366-508 (623)
2 PLN00113 leucine-rich repeat r 99.8 1.1E-19 2.4E-24 160.4 12.9 141 21-165 27-205 (968)
3 PLN00113 leucine-rich repeat r 99.3 4.6E-12 1E-16 112.3 6.5 72 91-166 518-589 (968)
4 PF13855 LRR_8: Leucine rich r 99.2 1.7E-11 3.6E-16 73.4 3.8 61 96-160 1-61 (61)
5 PF08263 LRRNT_2: Leucine rich 99.1 1.8E-10 3.8E-15 64.1 4.0 41 22-63 2-43 (43)
6 PLN03150 hypothetical protein; 99.0 3.1E-10 6.8E-15 96.6 4.9 66 97-166 419-484 (623)
7 KOG0617 Ras suppressor protein 98.9 1.1E-10 2.4E-15 83.4 -2.0 84 66-161 32-115 (264)
8 PF13855 LRR_8: Leucine rich r 98.8 5.8E-09 1.3E-13 62.2 4.3 60 68-136 2-61 (61)
9 PF14580 LRR_9: Leucine-rich r 98.8 4.7E-09 1E-13 75.7 4.4 82 68-161 43-126 (175)
10 KOG0472 Leucine-rich repeat pr 98.7 7.1E-09 1.5E-13 82.6 2.3 87 67-161 435-541 (565)
11 PF14580 LRR_9: Leucine-rich r 98.7 1.8E-08 3.9E-13 72.7 3.5 81 67-161 19-101 (175)
12 PF12799 LRR_4: Leucine Rich r 98.6 4.8E-08 1E-12 54.5 3.7 36 125-161 2-37 (44)
13 KOG0472 Leucine-rich repeat pr 98.6 2.3E-08 5E-13 79.7 1.9 94 67-166 388-522 (565)
14 KOG4237 Extracellular matrix p 98.6 1E-08 2.2E-13 81.4 -0.4 102 51-161 37-153 (498)
15 KOG0617 Ras suppressor protein 98.5 3E-09 6.5E-14 76.2 -3.9 66 91-161 97-163 (264)
16 PRK15387 E3 ubiquitin-protein 98.5 1.3E-07 2.8E-12 82.0 4.4 41 125-166 423-463 (788)
17 KOG0618 Serine/threonine phosp 98.4 3E-08 6.6E-13 85.6 -1.7 84 66-161 382-465 (1081)
18 KOG4194 Membrane glycoprotein 98.4 5.8E-07 1.2E-11 74.9 5.2 92 66-161 124-234 (873)
19 KOG4194 Membrane glycoprotein 98.4 4E-07 8.7E-12 75.8 4.2 85 67-161 78-162 (873)
20 KOG0444 Cytoskeletal regulator 98.3 1.1E-07 2.4E-12 79.8 0.3 83 67-160 103-185 (1255)
21 PF12799 LRR_4: Leucine Rich r 98.3 9.1E-07 2E-11 49.2 3.5 38 96-138 1-38 (44)
22 PRK15370 E3 ubiquitin-protein 98.3 8.3E-06 1.8E-10 71.0 10.4 39 15-57 55-97 (754)
23 KOG0444 Cytoskeletal regulator 98.2 2.3E-07 5E-12 78.0 -0.3 67 92-165 99-166 (1255)
24 KOG4579 Leucine-rich repeat (L 98.2 1.9E-07 4.2E-12 64.5 -1.1 88 66-165 52-139 (177)
25 PLN03210 Resistant to P. syrin 98.1 9.1E-06 2E-10 74.0 7.6 70 92-166 630-699 (1153)
26 cd00116 LRR_RI Leucine-rich re 98.1 2.6E-06 5.5E-11 66.3 3.3 64 94-161 163-234 (319)
27 KOG0618 Serine/threonine phosp 98.1 9.6E-07 2.1E-11 76.6 0.7 85 68-165 46-130 (1081)
28 cd00116 LRR_RI Leucine-rich re 98.1 2.1E-06 4.5E-11 66.8 2.5 66 96-161 137-206 (319)
29 COG4886 Leucine-rich repeat (L 98.1 3.3E-06 7.1E-11 68.1 3.4 86 68-166 117-203 (394)
30 KOG4237 Extracellular matrix p 98.0 1.7E-06 3.8E-11 69.0 1.6 68 92-163 270-337 (498)
31 PRK15370 E3 ubiquitin-protein 98.0 1.3E-05 2.8E-10 69.8 6.6 35 124-161 262-296 (754)
32 KOG1259 Nischarin, modulator o 98.0 3.7E-06 7.9E-11 65.3 2.7 84 66-161 283-387 (490)
33 PRK15387 E3 ubiquitin-protein 97.9 2E-05 4.4E-10 68.7 5.9 33 68-109 223-255 (788)
34 PLN03210 Resistant to P. syrin 97.9 3.2E-05 6.9E-10 70.5 6.5 69 92-165 653-721 (1153)
35 KOG1259 Nischarin, modulator o 97.7 1.1E-05 2.4E-10 62.7 0.8 61 94-161 282-342 (490)
36 KOG4658 Apoptotic ATPase [Sign 97.7 1.3E-05 2.8E-10 70.9 1.3 71 89-164 564-634 (889)
37 KOG2982 Uncharacterized conser 97.7 8.4E-06 1.8E-10 63.2 0.0 87 67-160 71-158 (418)
38 KOG4579 Leucine-rich repeat (L 97.7 7.7E-06 1.7E-10 56.7 -0.3 65 92-162 49-114 (177)
39 KOG0532 Leucine-rich repeat (L 97.6 4E-06 8.7E-11 69.6 -2.7 65 91-162 184-248 (722)
40 KOG1859 Leucine-rich repeat pr 97.6 7.2E-06 1.6E-10 70.1 -2.0 80 69-162 189-268 (1096)
41 KOG0531 Protein phosphatase 1, 97.5 4.6E-05 1E-09 62.1 2.0 81 67-161 95-175 (414)
42 COG4886 Leucine-rich repeat (L 97.5 2.7E-05 5.8E-10 62.8 0.4 80 68-159 141-220 (394)
43 KOG1644 U2-associated snRNP A' 97.4 0.00031 6.6E-09 51.7 4.9 82 68-161 43-126 (233)
44 KOG2739 Leucine-rich acidic nu 97.4 9.4E-05 2E-09 56.0 2.0 66 92-162 61-130 (260)
45 KOG0532 Leucine-rich repeat (L 97.4 2.4E-05 5.2E-10 65.2 -1.4 66 93-166 163-228 (722)
46 PF00560 LRR_1: Leucine Rich R 97.3 9E-05 2E-09 34.8 0.5 19 126-145 2-20 (22)
47 KOG1644 U2-associated snRNP A' 97.0 0.0012 2.5E-08 48.7 4.1 61 95-161 41-101 (233)
48 KOG0531 Protein phosphatase 1, 96.9 0.00028 6E-09 57.6 0.6 82 66-161 117-199 (414)
49 KOG1859 Leucine-rich repeat pr 96.9 4.1E-05 8.8E-10 65.7 -4.8 78 70-161 167-245 (1096)
50 KOG4658 Apoptotic ATPase [Sign 96.8 0.00066 1.4E-08 60.3 2.1 66 89-159 588-653 (889)
51 KOG2123 Uncharacterized conser 96.8 6.5E-05 1.4E-09 57.9 -3.7 77 68-154 42-123 (388)
52 PF00560 LRR_1: Leucine Rich R 96.7 0.0014 3E-08 30.6 1.8 18 97-115 1-18 (22)
53 KOG3207 Beta-tubulin folding c 96.6 0.00037 8E-09 56.5 -0.6 86 67-158 146-232 (505)
54 KOG2739 Leucine-rich acidic nu 96.4 0.0024 5.2E-08 48.5 2.4 61 95-161 42-104 (260)
55 KOG0473 Leucine-rich repeat pr 96.0 8.2E-05 1.8E-09 56.0 -6.9 84 66-161 41-124 (326)
56 PF13504 LRR_7: Leucine rich r 95.9 0.004 8.6E-08 27.2 1.0 13 125-137 2-14 (17)
57 KOG3207 Beta-tubulin folding c 95.7 0.005 1.1E-07 50.2 1.3 63 95-160 245-313 (505)
58 KOG3665 ZYG-1-like serine/thre 95.6 0.0079 1.7E-07 52.4 2.4 88 66-163 172-265 (699)
59 smart00369 LRR_TYP Leucine-ric 95.4 0.012 2.5E-07 28.4 1.7 14 124-137 2-15 (26)
60 smart00370 LRR Leucine-rich re 95.4 0.012 2.5E-07 28.4 1.7 14 124-137 2-15 (26)
61 KOG1909 Ran GTPase-activating 95.4 0.0044 9.6E-08 49.1 0.1 70 92-161 88-170 (382)
62 PF13516 LRR_6: Leucine Rich r 94.6 0.019 4.2E-07 27.1 1.1 20 124-143 2-21 (24)
63 COG5238 RNA1 Ran GTPase-activa 94.3 0.062 1.3E-06 41.8 3.7 70 92-161 88-170 (388)
64 smart00369 LRR_TYP Leucine-ric 94.2 0.054 1.2E-06 26.0 2.2 14 96-109 2-15 (26)
65 smart00370 LRR Leucine-rich re 94.2 0.054 1.2E-06 26.0 2.2 14 96-109 2-15 (26)
66 KOG3665 ZYG-1-like serine/thre 94.2 0.034 7.4E-07 48.5 2.4 64 92-161 169-233 (699)
67 KOG2982 Uncharacterized conser 94.0 0.017 3.6E-07 45.3 0.2 65 94-162 69-135 (418)
68 KOG1909 Ran GTPase-activating 93.5 0.055 1.2E-06 43.0 2.3 70 92-161 209-283 (382)
69 KOG2123 Uncharacterized conser 93.0 0.0056 1.2E-07 47.5 -3.7 85 67-165 19-105 (388)
70 PRK15386 type III secretion pr 91.9 0.38 8.2E-06 39.5 5.2 31 125-158 157-187 (426)
71 smart00364 LRR_BAC Leucine-ric 91.7 0.12 2.6E-06 25.1 1.3 12 126-137 4-15 (26)
72 COG5238 RNA1 Ran GTPase-activa 91.1 0.2 4.3E-06 39.1 2.6 93 66-160 29-132 (388)
73 smart00365 LRR_SD22 Leucine-ri 90.2 0.28 6.1E-06 23.8 1.8 14 124-137 2-15 (26)
74 PF13306 LRR_5: Leucine rich r 89.2 1.2 2.5E-05 29.6 5.0 61 90-157 52-112 (129)
75 PRK15386 type III secretion pr 88.6 0.92 2E-05 37.3 4.8 15 68-82 53-67 (426)
76 smart00368 LRR_RI Leucine rich 86.6 0.58 1.2E-05 22.9 1.6 14 148-161 2-15 (28)
77 KOG2120 SCF ubiquitin ligase, 83.6 0.043 9.4E-07 43.1 -4.9 61 94-158 208-270 (419)
78 PF13306 LRR_5: Leucine rich r 83.1 3.2 6.8E-05 27.4 4.6 79 68-158 13-91 (129)
79 KOG2120 SCF ubiquitin ligase, 80.3 0.24 5.2E-06 39.1 -1.9 59 96-158 185-244 (419)
80 KOG0473 Leucine-rich repeat pr 79.8 0.028 6.1E-07 42.6 -6.9 64 92-161 38-101 (326)
81 KOG3763 mRNA export factor TAP 75.9 1.8 3.9E-05 36.7 1.8 65 66-139 217-285 (585)
82 KOG3763 mRNA export factor TAP 60.0 5 0.00011 34.2 1.3 65 94-162 216-284 (585)
83 KOG3864 Uncharacterized conser 52.2 3.6 7.7E-05 30.7 -0.6 81 68-156 102-184 (221)
84 TIGR00864 PCC polycystin catio 45.4 12 0.00026 37.8 1.5 34 73-111 1-34 (2740)
85 KOG4308 LRR-containing protein 42.6 2.1 4.5E-05 36.0 -3.5 38 124-161 262-303 (478)
86 KOG1947 Leucine rich repeat pr 41.7 18 0.00039 29.4 1.9 36 123-158 268-305 (482)
87 smart00367 LRR_CC Leucine-rich 36.9 27 0.00059 16.2 1.4 11 148-158 2-12 (26)
88 PF15240 Pro-rich: Proline-ric 32.8 19 0.00042 26.1 0.6 9 16-24 14-22 (179)
89 TIGR00864 PCC polycystin catio 24.5 47 0.001 34.1 1.8 32 102-137 1-32 (2740)
90 smart00446 LRRcap occurring C- 21.7 46 0.001 16.0 0.6 15 143-157 8-22 (26)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.85 E-value=6.7e-21 Score=161.21 Aligned_cols=139 Identities=29% Similarity=0.375 Sum_probs=116.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcceeeEEEeCCC----CCEEEEEcCCCCCCCccccccCCccc
Q 043924 17 SEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTT----GRVIQLDLSFIGNWDLKERYLNASLF 92 (167)
Q Consensus 17 ~~~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~C~~~~----~~v~~L~L~~~~l~~l~~~~l~~~~~ 92 (167)
...+.++|++||+++|+.+..+. ..+|.++.|.+..|.|.||.|.... ..|+.|+|+++.+... .+..+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~-----ip~~i 438 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF-----IPNDI 438 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc-----CCHHH
Confidence 34567789999999999985432 2489875544444589999996311 2589999999988632 14457
Q ss_pred cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
..+++|+.|+|++|.+.|.+|.. ++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 88999999999999999999988 99999999999999999999999999999999999999999999996
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.1e-19 Score=160.43 Aligned_cols=141 Identities=32% Similarity=0.493 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcceeeEEEeCCCCCEEEEEcCCCCCCCcc-----------c-----
Q 043924 21 LDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLK-----------E----- 84 (167)
Q Consensus 21 ~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~l~-----------~----- 84 (167)
.+.|+.+|++||+++.++...+.+|+... ++|.|.||+|+. .++|+.|+|+++.+.... .
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~---~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSA---DVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCC---CCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 45899999999999965656788998766 899999999986 578999999988754211 0
Q ss_pred cc----cCCccccCCCCccEEEcCCCceeeecCccc------------------ccccCCCCCCCEEeCcCCcCCchhhH
Q 043924 85 RY----LNASLFTPFQQLESLYLEYNNIAGCVENEG------------------IERLSRLSNLKMLDLSENLFNNSILS 142 (167)
Q Consensus 85 ~~----l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~------------------~~~~~~l~~L~~L~ls~N~l~g~iP~ 142 (167)
+. ++...+..+++|++|++++|.++|.+|... +..++++++|++|++++|.+.+.+|.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 11 111112244555555555555544444210 01145555555555555555555555
Q ss_pred hhhcCCCCCEEECcCCcceecCC
Q 043924 143 SVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 143 ~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.++++++|++|++++|+++|.+|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCC
Confidence 55555555555555555555555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.29 E-value=4.6e-12 Score=112.30 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=54.7
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.+..+++|++|++++|.++|.+|.. +..+++|+.|++++|+++|.+|..+.++++|++|++++|+++|.||+
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPAS----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChh----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 3556677777777777777777766 77777777777777777777777777777788888888888777775
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.20 E-value=1.7e-11 Score=73.40 Aligned_cols=61 Identities=34% Similarity=0.437 Sum_probs=52.9
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcc
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRL 160 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 160 (167)
++|++|++++|+++. +|+. .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~-i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-ECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-cCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999984 5543 289999999999999999977778899999999999999985
No 5
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.08 E-value=1.8e-10 Score=64.12 Aligned_cols=41 Identities=37% Similarity=0.746 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcceeeEEEe
Q 043924 22 DQERFALLRLKLFFD-DPFNSLHHWVDDEGATDCCQWERVECS 63 (167)
Q Consensus 22 ~~~~~aL~~~k~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~C~ 63 (167)
++|++||++||+++. ++...+.+|+... ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 679999999999995 5567899999862 1299999999996
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=3.1e-10 Score=96.60 Aligned_cols=66 Identities=29% Similarity=0.460 Sum_probs=63.3
Q ss_pred CccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 97 QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 97 ~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.++.|+|++|.+.|.+|.. +..+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 4788999999999999998 99999999999999999999999999999999999999999999996
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-10 Score=83.43 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..+++++.|++|.++.+ ++.+..+.+|+.|++++|++. .+|.. ++.++.|++|+++-|++. .+|..|+
T Consensus 32 ~s~ITrLtLSHNKl~~v------ppnia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV------PPNIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeec------CCcHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccC
Confidence 46789999999998755 344677889999999999987 57777 899999999999999987 7888999
Q ss_pred cCCCCCEEECcCCcce
Q 043924 146 HLSSLTSLYLYSNRLE 161 (167)
Q Consensus 146 ~l~~L~~L~L~~N~ls 161 (167)
.++.|+.|||++|+++
T Consensus 100 s~p~levldltynnl~ 115 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLN 115 (264)
T ss_pred CCchhhhhhccccccc
Confidence 9999999999999886
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=5.8e-09 Score=62.24 Aligned_cols=60 Identities=33% Similarity=0.422 Sum_probs=51.7
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLF 136 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l 136 (167)
+++.|++++|.+..+. ...|..+++|++|++++|.++..-|.. |..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~-----~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIP-----PDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEEC-----TTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccC-----HHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence 5788999999887553 567889999999999999998665555 99999999999999985
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=4.7e-09 Score=75.72 Aligned_cols=82 Identities=29% Similarity=0.326 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccccccc-CCCCCCCEEeCcCCcCCch-hhHhhh
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL-SRLSNLKMLDLSENLFNNS-ILSSVA 145 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~-~~l~~L~~L~ls~N~l~g~-iP~~l~ 145 (167)
++..|++++|.+..+.. +..++.|+.|++++|.++. +.+. + ..+++|++|++++|++... --..+.
T Consensus 43 ~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~~-i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 43 KLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRISS-ISEG----LDKNLPNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp T--EEE-TTS--S--TT-----------TT--EEE--SS---S--CHH----HHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred CCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCCc-cccc----hHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence 45666666666654432 3446666667777776653 3322 2 2456666777777766531 113455
Q ss_pred cCCCCCEEECcCCcce
Q 043924 146 HLSSLTSLYLYSNRLE 161 (167)
Q Consensus 146 ~l~~L~~L~L~~N~ls 161 (167)
.+++|++|+|.+|.++
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 6667777777777665
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.70 E-value=7.1e-09 Score=82.59 Aligned_cols=87 Identities=25% Similarity=0.282 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc--------------------ccccCCCCCC
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG--------------------IERLSRLSNL 126 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~--------------------~~~~~~l~~L 126 (167)
.+++.++|++|-+.++ |..++.+..|+.|++++|+|. .+|... +..+.+|.+|
T Consensus 435 ~kLt~L~L~NN~Ln~L------P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDL------PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hcceeeecccchhhhc------chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 3455566666655443 334556777888888888775 344321 1247889999
Q ss_pred CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.+|||.+|.+. .+|+.+++|++|++|++++|.|+
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999998 78999999999999999999998
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.8e-08 Score=72.71 Aligned_cols=81 Identities=31% Similarity=0.429 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCCCCccccccCCcccc-CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhh-
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFT-PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV- 144 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~-~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l- 144 (167)
.+.+.|+|.++.++.+.. ++ .+.+|+.|++++|.++. ++. +..++.|++|++++|+++. +++.+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~-l~~-----l~~L~~L~~L~L~~N~I~~-i~~~l~ 84 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITK-LEG-----LPGLPRLKTLDLSNNRISS-ISEGLD 84 (175)
T ss_dssp -----------------S---------TT-TT--EEE-TTS--S---TT---------TT--EEE--SS---S--CHHHH
T ss_pred cccccccccccccccccc-------hhhhhcCCCEEECCCCCCcc-ccC-----ccChhhhhhcccCCCCCCc-cccchH
Confidence 357889999999876543 33 47899999999999984 443 7889999999999999994 54444
Q ss_pred hcCCCCCEEECcCCcce
Q 043924 145 AHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~ls 161 (167)
..+++|++|++++|++.
T Consensus 85 ~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKIS 101 (175)
T ss_dssp HH-TT--EEE-TTS---
T ss_pred HhCCcCCEEECcCCcCC
Confidence 47999999999999986
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.62 E-value=4.8e-08 Score=54.46 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 45555666666666666666665
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.57 E-value=2.3e-08 Score=79.72 Aligned_cols=94 Identities=26% Similarity=0.273 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCCCCCccc------------------cccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCE
Q 043924 67 GRVIQLDLSFIGNWDLKE------------------RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKM 128 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~------------------~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~ 128 (167)
.-|+.++++.|.+..++. ..+.+..+..+++|..|+|++|.+. .+|.+ ++.+..|+.
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e----~~~lv~Lq~ 462 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE----MGSLVRLQT 462 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh----hhhhhhhhe
Confidence 348999999998753332 1234566778999999999999987 68988 899999999
Q ss_pred EeCcCCcCC----------------------chhhH-hhhcCCCCCEEECcCCcceecCCC
Q 043924 129 LDLSENLFN----------------------NSILS-SVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 129 L~ls~N~l~----------------------g~iP~-~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
||++.|+|. |.++. .+.+|.+|+.|||.+|.+. .||+
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 999999886 22222 3677889999999999988 6775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.56 E-value=1e-08 Score=81.39 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCCCcceee-----EEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc
Q 043924 51 ATDCCQWER-----VECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG 116 (167)
Q Consensus 51 ~~~~c~w~g-----v~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~ 116 (167)
.|.||.-.+ |.|+. .+...+.|+|..|.++.++ +..|..+++|+.|||++|.|+..-|..
T Consensus 37 CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP-----~~aF~~l~~LRrLdLS~N~Is~I~p~A- 110 (498)
T KOG4237|consen 37 CPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIP-----PGAFKTLHRLRRLDLSKNNISFIAPDA- 110 (498)
T ss_pred CCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCC-----hhhccchhhhceecccccchhhcChHh-
Confidence 335665433 78874 2566889999999998654 677999999999999999999776776
Q ss_pred ccccCCCCCCCEEeCcC-CcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 117 IERLSRLSNLKMLDLSE-NLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 117 ~~~~~~l~~L~~L~ls~-N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
|..+.+|..|-+.+ |+|+...-..|++|.+|+-|.+.-|++.
T Consensus 111 ---F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 111 ---FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred ---hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 77777766655544 8887444445666666666666655554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.52 E-value=3e-09 Score=76.16 Aligned_cols=66 Identities=32% Similarity=0.428 Sum_probs=38.6
Q ss_pred cccCCCCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 91 LFTPFQQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.|+.++.|+.|||.+|++... +|.. |-.++.|+-|+|+.|.|. .+|..++++++|+.|.+..|.+-
T Consensus 97 gfgs~p~levldltynnl~e~~lpgn----ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGN----FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcc----hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 345555555555555555432 3433 444455555555555555 56667777788888877777764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.48 E-value=1.3e-07 Score=82.02 Aligned_cols=41 Identities=29% Similarity=0.264 Sum_probs=35.2
Q ss_pred CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+|+.|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|.
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5677888888887 6899999999999999999999998663
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.39 E-value=3e-08 Score=85.59 Aligned_cols=84 Identities=26% Similarity=0.297 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..++..|+|++|.+..+ +...+.++..|+.|+||+|.++ .+|.. +.++..|++|...+|++. ..| ++.
T Consensus 382 ~~hLKVLhLsyNrL~~f-----pas~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSF-----PASKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccceeeeeecccccccC-----CHHHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhh
Confidence 35788899999988654 3456778888899999999887 57766 666666666666666665 455 566
Q ss_pred cCCCCCEEECcCCcce
Q 043924 146 HLSSLTSLYLYSNRLE 161 (167)
Q Consensus 146 ~l~~L~~L~L~~N~ls 161 (167)
++++|+++|++.|+++
T Consensus 450 ~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hcCcceEEecccchhh
Confidence 6666666666666665
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.36 E-value=5.8e-07 Score=74.91 Aligned_cols=92 Identities=25% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCC
Q 043924 66 TGRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL 126 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L 126 (167)
.++++.|+|.+|.++++..- .++-+.|..-.++++|+|++|.++..--.. |..+.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL 199 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSL 199 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchh
Confidence 57888999998887643321 111233444456777888888776433333 7888889
Q ss_pred CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.+|.|+.|+++...+..|.+|++|+.|+|..|++.
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 99999999998666667888999999999999875
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.36 E-value=4e-07 Score=75.82 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
..+..|++++|.+.++. ...|.++++|+.+++..|.++ .||.. .....+|+.|+|.+|.++..-.+++..
T Consensus 78 ~~t~~LdlsnNkl~~id-----~~~f~nl~nLq~v~l~~N~Lt-~IP~f----~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHID-----FEFFYNLPNLQEVNLNKNELT-RIPRF----GHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred cceeeeeccccccccCc-----HHHHhcCCcceeeeeccchhh-hcccc----cccccceeEEeeeccccccccHHHHHh
Confidence 44667999999887543 344566777777777777665 45653 222233555555555555444445555
Q ss_pred CCCCCEEECcCCcce
Q 043924 147 LSSLTSLYLYSNRLE 161 (167)
Q Consensus 147 l~~L~~L~L~~N~ls 161 (167)
++.|++|||+.|.++
T Consensus 148 l~alrslDLSrN~is 162 (873)
T KOG4194|consen 148 LPALRSLDLSRNLIS 162 (873)
T ss_pred Hhhhhhhhhhhchhh
Confidence 555555555555554
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.33 E-value=1.1e-07 Score=79.84 Aligned_cols=83 Identities=30% Similarity=0.349 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
..++.|||++|.+...+ ..+..-.++..|+||+|++. .||.. -|-+++-|-+||||+|++. .+|+.+.+
T Consensus 103 ~dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie-tIPn~---lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE-TIPNS---LFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred ccceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc-cCCch---HHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 45677888888776442 23444566677777777775 56654 2566777777777777776 56666777
Q ss_pred CCCCCEEECcCCcc
Q 043924 147 LSSLTSLYLYSNRL 160 (167)
Q Consensus 147 l~~L~~L~L~~N~l 160 (167)
|..|++|.|++|.+
T Consensus 172 L~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPL 185 (1255)
T ss_pred HhhhhhhhcCCChh
Confidence 77777777777754
No 21
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=9.1e-07 Score=49.25 Aligned_cols=38 Identities=42% Similarity=0.545 Sum_probs=32.3
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN 138 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g 138 (167)
++|++|++++|+++ .+|+. +++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCCC
Confidence 47899999999998 57877 8999999999999999983
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.27 E-value=8.3e-06 Score=70.97 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCCCC----CCCCCCCCCCCcce
Q 043924 15 GGSEGCLDQERFALLRLKLFFDDPFNSLH----HWVDDEGATDCCQW 57 (167)
Q Consensus 15 ~~~~~~~~~~~~aL~~~k~~~~~~~~~~~----~W~~~~~~~~~c~w 57 (167)
=..+++.++|...+.++.+.+..| .... +|.+.. ++|.-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p-~~~~~~~~~~~~~~---~fc~~ 97 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFP-AYADNIQYSRGGAD---QYCIL 97 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCC-chhhccccccCCCC---ccccc
Confidence 357778899999999999888433 2333 488876 78853
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.22 E-value=2.3e-07 Score=78.02 Aligned_cols=67 Identities=30% Similarity=0.296 Sum_probs=40.9
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH-hhhcCCCCCEEECcCCcceecCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS-SVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~-~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+-.+..|+.||||+|++. ..|.. +..-+++-+|+||+|++. .||. -|.+|+.|-+|||++|++. ++|
T Consensus 99 iF~l~dLt~lDLShNqL~-EvP~~----LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLR-EVPTN----LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred hcccccceeeecchhhhh-hcchh----hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence 344666666666666665 45555 566666666666666666 4443 3456666666777766665 444
No 24
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=1.9e-07 Score=64.49 Aligned_cols=88 Identities=26% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..+++.++|++|.+.+++ ...-..++.++.|++++|.++ .+|.+ +..++.|+.|+++.|.|. ..|..+.
T Consensus 52 ~~el~~i~ls~N~fk~fp-----~kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFP-----KKFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhCC-----HHHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHH
Confidence 567899999999887542 233344668899999999998 68988 999999999999999998 6788788
Q ss_pred cCCCCCEEECcCCcceecCC
Q 043924 146 HLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP 165 (167)
.|.++-.|+..+|.+. +||
T Consensus 121 ~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARA-EID 139 (177)
T ss_pred HHHhHHHhcCCCCccc-cCc
Confidence 8999999999888765 454
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=9.1e-06 Score=74.01 Aligned_cols=70 Identities=20% Similarity=0.137 Sum_probs=44.5
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+..+++|++|+++++...+.+|. ++.+++|++|++++|..-..+|..++++++|+.|+++++..-+.+|.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 34566777777776654455553 56677777777776655556677777777777777766544445553
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.09 E-value=2.6e-06 Score=66.34 Aligned_cols=64 Identities=31% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924 94 PFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.+++|++|++++|.+++. ++.. +..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEG----LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHH----HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 344555555555555531 1111 33344555566655555432 2233444555566666555554
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.08 E-value=9.6e-07 Score=76.62 Aligned_cols=85 Identities=29% Similarity=0.324 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
++.+|++++|.+... |..+..+.+|+.|+++.|.+. ..|.. .+++.+|+++.|..|++. ..|..+..+
T Consensus 46 ~L~~l~lsnn~~~~f------p~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSF------PIQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISEL 113 (1081)
T ss_pred eeEEeeccccccccC------CchhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhh
Confidence 378999999987654 334667888999999999887 56766 889999999999998887 789999999
Q ss_pred CCCCEEECcCCcceecCC
Q 043924 148 SSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~iP 165 (167)
.+|++|++++|+|. .+|
T Consensus 114 knl~~LdlS~N~f~-~~P 130 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG-PIP 130 (1081)
T ss_pred hcccccccchhccC-CCc
Confidence 99999999999886 666
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.07 E-value=2.1e-06 Score=66.83 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=40.9
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc----hhhHhhhcCCCCCEEECcCCcce
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN----SILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
++|+.|++++|.+++.........+..+++|++|++++|.+++ .++..+..+++|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 6677777777777643222111125566677777777777774 23444555667777777777765
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.06 E-value=3.3e-06 Score=68.10 Aligned_cols=86 Identities=30% Similarity=0.377 Sum_probs=65.4
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCC-CccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQ-QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~-~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.++.+++.++.+..+. .....+. +|+.|++++|.+. .+|.. +..+++|+.|++++|+++ .+|...+.
T Consensus 117 ~l~~L~l~~n~i~~i~------~~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIP------PLIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCCcccccCc------cccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhh
Confidence 4677777777776553 2234453 8999999999987 45544 788999999999999998 67776668
Q ss_pred CCCCCEEECcCCcceecCCC
Q 043924 147 LSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG~iP~ 166 (167)
+++|+.|++++|+++ .||.
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~ 203 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPP 203 (394)
T ss_pred hhhhhheeccCCccc-cCch
Confidence 888999999999887 5554
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.05 E-value=1.7e-06 Score=68.96 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=48.7
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
|..|++|++|+|++|.+++.-+.. |..+..++.|.|..|++.-.--..|.++..|+.|+|.+|+++--
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 667888888888888888655554 66777777777777777654455667777777777777777643
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.02 E-value=1.3e-05 Score=69.77 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=23.1
Q ss_pred CCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 124 ~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
++|++|++++|+++ .+|..+. ++|++|++++|+|+
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 35677777777776 4565443 46777777777776
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=3.7e-06 Score=65.33 Aligned_cols=84 Identities=37% Similarity=0.415 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchh-----
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSI----- 140 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~i----- 140 (167)
...++.+||++|.++.+.. ...-+++++.|++|+|.+.- +.. +..+++|+.||||+|.++...
T Consensus 283 Wq~LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~N~i~~-v~n-----La~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE------SVKLAPKLRRLILSQNRIRT-VQN-----LAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred Hhhhhhccccccchhhhhh------hhhhccceeEEeccccceee-ehh-----hhhcccceEeecccchhHhhhhhHhh
Confidence 4456777888877654421 23345677777777777752 221 566677777777777654210
Q ss_pred ----------------hHhhhcCCCCCEEECcCCcce
Q 043924 141 ----------------LSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 141 ----------------P~~l~~l~~L~~L~L~~N~ls 161 (167)
-..++++-+|..||+.+|++.
T Consensus 351 LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hcCEeeeehhhhhHhhhhhhHhhhhheeccccccchh
Confidence 022455666777777777764
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.92 E-value=2e-05 Score=68.68 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCcee
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIA 109 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 109 (167)
+++.|++.+|+++.++. ..++|++|++++|+++
T Consensus 223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLT 255 (788)
T ss_pred CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccC
Confidence 45566666665554321 1345666666666655
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.86 E-value=3.2e-05 Score=70.54 Aligned_cols=69 Identities=20% Similarity=0.141 Sum_probs=52.9
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+..+++|++|++++|.....+|.. +..+++|+.|+++++..-+.+|..+ ++++|+.|++++|...+.+|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred cccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 566788999999988777778887 8889999999998866555777655 67778888887776555554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.70 E-value=1.1e-05 Score=62.74 Aligned_cols=61 Identities=30% Similarity=0.348 Sum_probs=52.2
Q ss_pred CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
....|+.+|||+|.++ .|.+. ..-++.++.|++|+|.+. .+. .++.+++|+.|||++|.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDES----vKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDES----VKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hHhhhhhccccccchh-hhhhh----hhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence 4578999999999997 56665 778899999999999998 443 3899999999999999876
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.70 E-value=1.3e-05 Score=70.88 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=62.1
Q ss_pred CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecC
Q 043924 89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~i 164 (167)
...|..++.|++|||++|.=-+.+|.. ++.|-+|++|++++..++ .+|..+++|.+|.+|++..+.-...+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence 345778999999999998877889998 999999999999999998 89999999999999999887654333
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=8.4e-06 Score=63.16 Aligned_cols=87 Identities=25% Similarity=0.255 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch-hhHhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l~ 145 (167)
.+|..+||.+|.+++.... +..+..++.|++|+++.|.+...|-.. -..+.+|++|-|.+..+... .-..+.
T Consensus 71 ~~v~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence 4688899999988765543 456778999999999999998776553 24567899999999888763 344567
Q ss_pred cCCCCCEEECcCCcc
Q 043924 146 HLSSLTSLYLYSNRL 160 (167)
Q Consensus 146 ~l~~L~~L~L~~N~l 160 (167)
.+|.++.|+++.|++
T Consensus 144 ~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL 158 (418)
T ss_pred cchhhhhhhhccchh
Confidence 888899999998854
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=7.7e-06 Score=56.70 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=54.8
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccC-CCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLS-RLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~-~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+....+|+..+|++|.|. .+|+. |. ..+.++++++++|+++ .+|.+++.++.|+.|+++.|.|.-
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence 345678899999999998 46665 54 3457899999999998 799999999999999999999873
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.63 E-value=4e-06 Score=69.65 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=51.5
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
.++.+.+|+.|.+..|++. .+|++ +..| .|..||+|.|+++ .||-.|.+|+.|++|.|.+|.++.
T Consensus 184 ql~~l~slr~l~vrRn~l~-~lp~E----l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNHLE-DLPEE----LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HhhhHHHHHHHHHhhhhhh-hCCHH----HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 3556667777777777765 45665 6644 4889999999998 799999999999999999999873
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=7.2e-06 Score=70.07 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=46.2
Q ss_pred EEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC
Q 043924 69 VIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS 148 (167)
Q Consensus 69 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~ 148 (167)
+..|+|++|++.... .+..+++|+.|||++|.+. .+|.. +...+. |+.|.+.+|.++. + ..+.+|.
T Consensus 189 le~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~-~vp~l---~~~gc~-L~~L~lrnN~l~t-L-~gie~Lk 254 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLR-HVPQL---SMVGCK-LQLLNLRNNALTT-L-RGIENLK 254 (1096)
T ss_pred hhhhccchhhhhhhH-------HHHhcccccccccccchhc-ccccc---chhhhh-heeeeecccHHHh-h-hhHHhhh
Confidence 445566666554332 2445777777777777776 45542 122232 6666666666652 2 2356677
Q ss_pred CCCEEECcCCccee
Q 043924 149 SLTSLYLYSNRLEG 162 (167)
Q Consensus 149 ~L~~L~L~~N~lsG 162 (167)
+|+.||+++|-++|
T Consensus 255 sL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhccchhHhhhhc
Confidence 77777777776664
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.52 E-value=4.6e-05 Score=62.14 Aligned_cols=81 Identities=35% Similarity=0.376 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
..+..+++.+|.+..+.. .+..+++|++|++++|.++...+ +..++.|+.|++++|.++. + ..+..
T Consensus 95 ~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~-~-~~~~~ 160 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD-I-SGLES 160 (414)
T ss_pred cceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcchh-c-cCCcc
Confidence 457788888888765532 15568888888888888874333 5677778888888888873 3 23555
Q ss_pred CCCCCEEECcCCcce
Q 043924 147 LSSLTSLYLYSNRLE 161 (167)
Q Consensus 147 l~~L~~L~L~~N~ls 161 (167)
+++|+.+++++|+++
T Consensus 161 l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIV 175 (414)
T ss_pred chhhhcccCCcchhh
Confidence 788888888888776
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.50 E-value=2.7e-05 Score=62.79 Aligned_cols=80 Identities=34% Similarity=0.375 Sum_probs=64.2
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
+++.+++++|.+..+. ..+..++.|+.|++++|.+. .+|.. .+.++.|+.|++++|+++ .+|.....+
T Consensus 141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~ 208 (394)
T COG4886 141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELL 208 (394)
T ss_pred hcccccccccchhhhh------hhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhh
Confidence 6888888888887552 23667999999999999998 56654 458889999999999998 778777777
Q ss_pred CCCCEEECcCCc
Q 043924 148 SSLTSLYLYSNR 159 (167)
Q Consensus 148 ~~L~~L~L~~N~ 159 (167)
..|+++.+++|+
T Consensus 209 ~~L~~l~~~~N~ 220 (394)
T COG4886 209 SALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhcCCc
Confidence 778888888884
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00031 Score=51.69 Aligned_cols=82 Identities=26% Similarity=0.244 Sum_probs=59.8
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh--Hhhh
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL--SSVA 145 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP--~~l~ 145 (167)
.-..+||++|.+..+. .|..++.|.+|.+++|+++..-|.- -..+++|+.|.|.+|.+. .+- .-+.
T Consensus 43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~-~l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQ-ELGDLDPLA 110 (233)
T ss_pred ccceecccccchhhcc-------cCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchh-hhhhcchhc
Confidence 4567888888775543 2566889999999999998554442 234567999999999886 222 2367
Q ss_pred cCCCCCEEECcCCcce
Q 043924 146 HLSSLTSLYLYSNRLE 161 (167)
Q Consensus 146 ~l~~L~~L~L~~N~ls 161 (167)
.+++|++|.+-+|+.+
T Consensus 111 ~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCCccceeeecCCchh
Confidence 8889999999888765
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=9.4e-05 Score=56.02 Aligned_cols=66 Identities=29% Similarity=0.450 Sum_probs=50.8
Q ss_pred ccCCCCccEEEcCCC--ceeeecCcccccccCCCCCCCEEeCcCCcCCc--hhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYN--NIAGCVENEGIERLSRLSNLKMLDLSENLFNN--SILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n--~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g--~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..|++|++|.++.| .+++.++.. ...+++|++++++.|++.- .++ .+..+.+|..|++.++..++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc
Confidence 556889999999999 667666654 5667999999999999973 222 25677888899998886554
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.37 E-value=2.4e-05 Score=65.19 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=38.4
Q ss_pred cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+.+.+|..||.+.|.+. .+|+. ++.+.+|+.|.+..|++. .+|+++..|+ |..||++.|+++ .||.
T Consensus 163 g~~~tl~~ld~s~nei~-slpsq----l~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQ-SLPSQ----LGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccchhHHHhhhhhhhhh-hchHH----hhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecch
Confidence 33445555555555554 34444 555566666666666655 4555566444 777788888777 5663
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.26 E-value=9e-05 Score=34.78 Aligned_cols=19 Identities=53% Similarity=0.560 Sum_probs=9.0
Q ss_pred CCEEeCcCCcCCchhhHhhh
Q 043924 126 LKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 126 L~~L~ls~N~l~g~iP~~l~ 145 (167)
|++||+++|+|+ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555554 4444433
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0012 Score=48.72 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=50.0
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+.+...+||++|.+. .++. |..++.|.+|.+++|+++..-|.--.-+++|+.|.|.+|.+.
T Consensus 41 ~d~~d~iDLtdNdl~-~l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceecccccchh-hccc-----CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 456778999999985 3343 788999999999999999666665556788999999999875
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.91 E-value=0.00028 Score=57.58 Aligned_cols=82 Identities=32% Similarity=0.324 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh-Hhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSV 144 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l 144 (167)
..+++.+++++|.+..+.. +..++.|+.|++++|.++. +.. +..++.|+.+++++|++...-+ . .
T Consensus 117 ~~~L~~L~ls~N~I~~i~~-------l~~l~~L~~L~l~~N~i~~-~~~-----~~~l~~L~~l~l~~n~i~~ie~~~-~ 182 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEG-------LSTLTLLKELNLSGNLISD-ISG-----LESLKSLKLLDLSYNRIVDIENDE-L 182 (414)
T ss_pred hhcchheeccccccccccc-------hhhccchhhheeccCcchh-ccC-----CccchhhhcccCCcchhhhhhhhh-h
Confidence 3467889999999876643 4567789999999999973 333 6779999999999999985433 2 5
Q ss_pred hcCCCCCEEECcCCcce
Q 043924 145 AHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~ls 161 (167)
..+.+++.+++.+|.+.
T Consensus 183 ~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 183 SELISLEELDLGGNSIR 199 (414)
T ss_pred hhccchHHHhccCCchh
Confidence 78888999999999765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.85 E-value=4.1e-05 Score=65.66 Aligned_cols=78 Identities=28% Similarity=0.292 Sum_probs=54.7
Q ss_pred EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHh-hhcCC
Q 043924 70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS-VAHLS 148 (167)
Q Consensus 70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~-l~~l~ 148 (167)
..+++++|.+..+ ...+.-++.++.|+|++|+++.. . . +..++.|++|||+.|.++ .+|.. ...+
T Consensus 167 ~~a~fsyN~L~~m------D~SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc- 232 (1096)
T KOG1859|consen 167 ATASFSYNRLVLM------DESLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGC- 232 (1096)
T ss_pred hhhhcchhhHHhH------HHHHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhh-
Confidence 3455555555322 12344578899999999999743 2 3 788999999999999998 56652 2233
Q ss_pred CCCEEECcCCcce
Q 043924 149 SLTSLYLYSNRLE 161 (167)
Q Consensus 149 ~L~~L~L~~N~ls 161 (167)
+|+.|.+.+|.++
T Consensus 233 ~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 233 KLQLLNLRNNALT 245 (1096)
T ss_pred hheeeeecccHHH
Confidence 3999999999875
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.80 E-value=0.00066 Score=60.35 Aligned_cols=66 Identities=26% Similarity=0.200 Sum_probs=56.9
Q ss_pred CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCc
Q 043924 89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNR 159 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ 159 (167)
|..++.|-+|++|++++..+. .+|.. +.+|+.|.+||+..+.....+|.....|++|++|.+..-.
T Consensus 588 P~~I~~Li~LryL~L~~t~I~-~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGIS-HLPSG----LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ChHHhhhhhhhcccccCCCcc-ccchH----HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 455778999999999999998 78887 9999999999999988776777777889999999986544
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=6.5e-05 Score=57.87 Aligned_cols=77 Identities=27% Similarity=0.253 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH-----
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS----- 142 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~----- 142 (167)
.+..|.|+-|.++.+.. +..+++|+.|+|..|.|.. +.+- +-+.++++|+.|.|..|.-.|.-+.
T Consensus 42 ~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~s-ldEL--~YLknlpsLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIES-LDEL--EYLKNLPSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred cceeEEeeccccccchh-------HHHHHHHHHHHHHhccccc-HHHH--HHHhcCchhhhHhhccCCcccccchhHHHH
Confidence 34455555555443321 3345555555555555532 1110 1144555555555555555544332
Q ss_pred hhhcCCCCCEEE
Q 043924 143 SVAHLSSLTSLY 154 (167)
Q Consensus 143 ~l~~l~~L~~L~ 154 (167)
.+.-|++|+.||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 133445555443
No 52
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.69 E-value=0.0014 Score=30.65 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.0
Q ss_pred CccEEEcCCCceeeecCcc
Q 043924 97 QLESLYLEYNNIAGCVENE 115 (167)
Q Consensus 97 ~L~~L~Ls~n~l~g~ip~~ 115 (167)
+|++||+++|.++ .+|+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4899999999999 89886
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00037 Score=56.54 Aligned_cols=86 Identities=26% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~ 145 (167)
.+|+.|||++|-++.+... ......|++|+.|+++.|.+.-.+.... -..+++|+.|.|++..|+. .+-....
T Consensus 146 ~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred CcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 4678888888866543211 1234458888888888888865443320 1245566666666666654 2233334
Q ss_pred cCCCCCEEECcCC
Q 043924 146 HLSSLTSLYLYSN 158 (167)
Q Consensus 146 ~l~~L~~L~L~~N 158 (167)
.+|+|+.|+|.+|
T Consensus 220 ~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 220 TFPSLEVLYLEAN 232 (505)
T ss_pred hCCcHHHhhhhcc
Confidence 4555555555555
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0024 Score=48.51 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=45.6
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCC--cCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN--LFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+..|+.+++.+..++. +- .+..|++|+.|.++.| +.++.++.....+++|+++++++|++.
T Consensus 42 ~~~le~ls~~n~gltt-~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-LT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceee-cc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4455666666655552 11 2677889999999999 666666666677799999999999986
No 55
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.01 E-value=8.2e-05 Score=55.95 Aligned_cols=84 Identities=18% Similarity=0.041 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..+|+.||++.|.+..++ ..|..++.+..||++.|.+. .+|.. ++.+..+..+++..|..+ ..|.+++
T Consensus 41 ~kr~tvld~~s~r~vn~~------~n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG------KNFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred cceeeeehhhhhHHHhhc------cchHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCcccc
Confidence 578999999999876553 34666888999999999986 56776 888888999999999887 7899999
Q ss_pred cCCCCCEEECcCCcce
Q 043924 146 HLSSLTSLYLYSNRLE 161 (167)
Q Consensus 146 ~l~~L~~L~L~~N~ls 161 (167)
+.+.++++++-.|.|+
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999888765
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.94 E-value=0.004 Score=27.18 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=5.0
Q ss_pred CCCEEeCcCCcCC
Q 043924 125 NLKMLDLSENLFN 137 (167)
Q Consensus 125 ~L~~L~ls~N~l~ 137 (167)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.005 Score=50.18 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHh-----hhcCCCCCEEECcCCcc
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSS-----VAHLSSLTSLYLYSNRL 160 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~-----l~~l~~L~~L~L~~N~l 160 (167)
+..|+.|||++|.+-. .+.. +-.+.++.|+.|+++.+.+.. .+|+. ...+++|++|++..|++
T Consensus 245 ~~~L~~LdLs~N~li~-~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLID-FDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccc-cccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5566666666666542 2210 114556666666666665553 12332 23455666666666665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.60 E-value=0.0079 Score=52.36 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch--hhHh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS--ILSS 143 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~--iP~~ 143 (167)
-.++..||+++.+++.+. .++.|++|+.|.+.+=.+... .....+-+|++|++||+|..+.... +...
T Consensus 172 FpNL~sLDIS~TnI~nl~-------GIS~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q 241 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNLS-------GISRLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ 241 (699)
T ss_pred cCccceeecCCCCccCcH-------HHhccccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHH
Confidence 345666677666665442 245566666666655444310 0011267789999999998766532 2332
Q ss_pred ----hhcCCCCCEEECcCCcceec
Q 043924 144 ----VAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 144 ----l~~l~~L~~L~L~~N~lsG~ 163 (167)
-..||+|+.||.++..+.+.
T Consensus 242 Ylec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 242 YLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhcccCccccEEecCCcchhHH
Confidence 23588999999998877643
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.44 E-value=0.012 Score=28.44 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=7.7
Q ss_pred CCCCEEeCcCCcCC
Q 043924 124 SNLKMLDLSENLFN 137 (167)
Q Consensus 124 ~~L~~L~ls~N~l~ 137 (167)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.44 E-value=0.012 Score=28.44 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=7.7
Q ss_pred CCCCEEeCcCCcCC
Q 043924 124 SNLKMLDLSENLFN 137 (167)
Q Consensus 124 ~~L~~L~ls~N~l~ 137 (167)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.40 E-value=0.0044 Score=49.07 Aligned_cols=70 Identities=23% Similarity=0.114 Sum_probs=47.8
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc----hhhH---------hhhcCCCCCEEECcCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN----SILS---------SVAHLSSLTSLYLYSN 158 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g----~iP~---------~l~~l~~L~~L~L~~N 158 (167)
+...++|+++|||.|.|.-.-++...+-+..++.|++|.|.+|.+.- .+.. ..+.-++|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34466899999999998644444322336778899999999998852 1111 1234567899999988
Q ss_pred cce
Q 043924 159 RLE 161 (167)
Q Consensus 159 ~ls 161 (167)
++.
T Consensus 168 rle 170 (382)
T KOG1909|consen 168 RLE 170 (382)
T ss_pred ccc
Confidence 874
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.57 E-value=0.019 Score=27.08 Aligned_cols=20 Identities=40% Similarity=0.473 Sum_probs=9.6
Q ss_pred CCCCEEeCcCCcCCchhhHh
Q 043924 124 SNLKMLDLSENLFNNSILSS 143 (167)
Q Consensus 124 ~~L~~L~ls~N~l~g~iP~~ 143 (167)
++|++|+|++|+|++.-...
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45566666666655444433
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.27 E-value=0.062 Score=41.76 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=53.6
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCC----chhhHhh---------hcCCCCCEEECcCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN----NSILSSV---------AHLSSLTSLYLYSN 158 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~----g~iP~~l---------~~l~~L~~L~L~~N 158 (167)
+-.+++|+..+||.|.|....|+...+-++.-+.|.+|.+++|.+- |.|...+ ..-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4568999999999999987777765555778899999999999874 2343322 23478999999999
Q ss_pred cce
Q 043924 159 RLE 161 (167)
Q Consensus 159 ~ls 161 (167)
+|.
T Consensus 168 Rle 170 (388)
T COG5238 168 RLE 170 (388)
T ss_pred hhc
Confidence 875
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.17 E-value=0.054 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=7.1
Q ss_pred CCccEEEcCCCcee
Q 043924 96 QQLESLYLEYNNIA 109 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~ 109 (167)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.17 E-value=0.054 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=7.1
Q ss_pred CCccEEEcCCCcee
Q 043924 96 QQLESLYLEYNNIA 109 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~ 109 (167)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.16 E-value=0.034 Score=48.52 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=48.0
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
..++++|..||+|+.+++.. .. +++|++|++|.+.+=.|.. ..=..+.+|++|++||+|.....
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~G----IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SG----ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hhccCccceeecCCCCccCc--HH----HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 45688999999999888732 22 8899999998887766653 22245778999999999987643
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.017 Score=45.32 Aligned_cols=65 Identities=28% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCCccEEEcCCCceee--ecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 94 PFQQLESLYLEYNNIAG--CVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g--~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
..+.++.+||.+|.++. .|-.- +.+|+.|++|+++.|.++..|-..-..+.+|++|-|.+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~i----le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAI----LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHH----HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence 36789999999999973 12222 6789999999999999986654322466789999888776653
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.48 E-value=0.055 Score=43.05 Aligned_cols=70 Identities=24% Similarity=0.257 Sum_probs=35.1
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----hhHhh-hcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----ILSSV-AHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l-~~l~~L~~L~L~~N~ls 161 (167)
+..+++|+.|||..|.|+-.-.......+..+++|+.|+++...++.. +-..+ ...++|++|.+.+|.++
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 344566666666666664211000001145555666666666666431 12222 23466677777666654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.0056 Score=47.48 Aligned_cols=85 Identities=28% Similarity=0.301 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh--Hhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL--SSV 144 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP--~~l 144 (167)
..|..|++-+.++.++. ....++.|+.|.||-|+++.--| +..+++|+.|+|..|.|.. +- ..+
T Consensus 19 ~~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~s-ldEL~YL 84 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIES-LDELEYL 84 (388)
T ss_pred HHhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhccccc-HHHHHHH
Confidence 35667777777776553 34578999999999999985443 7899999999999999984 33 346
Q ss_pred hcCCCCCEEECcCCcceecCC
Q 043924 145 AHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~lsG~iP 165 (167)
.++++|+.|.|..|.-.|+-+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcCchhhhHhhccCCcccccc
Confidence 899999999999999887654
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.88 E-value=0.38 Score=39.53 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924 125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N 158 (167)
+|++|+++++... .+|..+. .+|++|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555665555433 2232222 35666666554
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.72 E-value=0.12 Score=25.08 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=5.9
Q ss_pred CCEEeCcCCcCC
Q 043924 126 LKMLDLSENLFN 137 (167)
Q Consensus 126 L~~L~ls~N~l~ 137 (167)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444555555544
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.10 E-value=0.2 Score=39.05 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee----cCccc---ccccCCCCCCCEEeCcCCcCCc
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC----VENEG---IERLSRLSNLKMLDLSENLFNN 138 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----ip~~~---~~~~~~l~~L~~L~ls~N~l~g 138 (167)
...++.++|++|-+..-..-.+ ...+.+-.+|+..+++.-. +|. ++... ...+-.+++|+..+||.|-|..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4568999999997742100000 0123445667777666532 232 22210 1125678999999999999987
Q ss_pred hhhHh----hhcCCCCCEEECcCCcc
Q 043924 139 SILSS----VAHLSSLTSLYLYSNRL 160 (167)
Q Consensus 139 ~iP~~----l~~l~~L~~L~L~~N~l 160 (167)
..|+. +.+-+.|.+|.|++|-+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 77764 45678899999999965
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.20 E-value=0.28 Score=23.80 Aligned_cols=14 Identities=50% Similarity=0.681 Sum_probs=9.6
Q ss_pred CCCCEEeCcCCcCC
Q 043924 124 SNLKMLDLSENLFN 137 (167)
Q Consensus 124 ~~L~~L~ls~N~l~ 137 (167)
++|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56677777777764
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.19 E-value=1.2 Score=29.61 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=27.4
Q ss_pred ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcC
Q 043924 90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157 (167)
Q Consensus 90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~ 157 (167)
..|..+..++.+.+.+ .+. .++.. .|..+++|+.+++..+ ++-.-...|.++ +|+.+.+..
T Consensus 52 ~~F~~~~~l~~i~~~~-~~~-~i~~~---~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 52 NAFSNCKSLESITFPN-NLK-SIGDN---AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTT-TT-EEEEETS-TT--EE-TT---TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred eeeecccccccccccc-ccc-ccccc---cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 3455565677777754 222 12322 1566777777777654 442333345565 677766654
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.57 E-value=0.92 Score=37.34 Aligned_cols=15 Identities=13% Similarity=-0.188 Sum_probs=8.6
Q ss_pred CEEEEEcCCCCCCCc
Q 043924 68 RVIQLDLSFIGNWDL 82 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l 82 (167)
..+.|+++++.+..+
T Consensus 53 ~l~~L~Is~c~L~sL 67 (426)
T PRK15386 53 ASGRLYIKDCDIESL 67 (426)
T ss_pred CCCEEEeCCCCCccc
Confidence 345666666655543
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.59 E-value=0.58 Score=22.91 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=8.8
Q ss_pred CCCCEEECcCCcce
Q 043924 148 SSLTSLYLYSNRLE 161 (167)
Q Consensus 148 ~~L~~L~L~~N~ls 161 (167)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777766664
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.63 E-value=0.043 Score=43.10 Aligned_cols=61 Identities=26% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcC-CcCCc-hhhHhhhcCCCCCEEECcCC
Q 043924 94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSE-NLFNN-SILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~-N~l~g-~iP~~l~~l~~L~~L~L~~N 158 (167)
.+++|+.|.+.++.+..+|-.. +..=.+|+.|+++. +.|+. ...-.+.+++.|..|+|+-.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 3445555555555555544444 44445555555543 23332 11122344555555554433
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.09 E-value=3.2 Score=27.43 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=46.4
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
.++.+.+.. .+..++ ...|..+++|+.+.+.++ +. .++.. .|.+++.++.+.+.. .+...-...|..+
T Consensus 13 ~l~~i~~~~-~~~~I~-----~~~F~~~~~l~~i~~~~~-~~-~i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 13 NLESITFPN-TIKKIG-----ENAFSNCTSLKSINFPNN-LT-SIGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp T--EEEETS-T--EE------TTTTTT-TT-SEEEESST-TS-CE-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCEEEECC-CeeEeC-----hhhccccccccccccccc-cc-cccee---eeecccccccccccc-ccccccccccccc
Confidence 577777764 344333 456788889999999875 44 34443 278888899999975 4442334467789
Q ss_pred CCCCEEECcCC
Q 043924 148 SSLTSLYLYSN 158 (167)
Q Consensus 148 ~~L~~L~L~~N 158 (167)
++|+.+++..|
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 99999998765
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.27 E-value=0.24 Score=39.06 Aligned_cols=59 Identities=29% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924 96 QQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N 158 (167)
+.|++|||++..++-. +-.- ++.+.+|+.|.+.++++...|-..+++=.+|+.|+|+..
T Consensus 185 sRlq~lDLS~s~it~stl~~i----Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI----LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH----HHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 3589999999888632 1122 677889999999999999999999999999999998753
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.76 E-value=0.028 Score=42.65 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=52.9
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+......+.||++.|.+.. +-.. |+.++.|..||++.|++. .+|..++++..++.+++..|..+
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKN----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccc----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence 4457788999999999863 2333 778899999999999997 78998999999999999988776
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.87 E-value=1.8 Score=36.73 Aligned_cols=65 Identities=28% Similarity=0.270 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCC--ceeeecCcccccccCCC--CCCCEEeCcCCcCCch
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYN--NIAGCVENEGIERLSRL--SNLKMLDLSENLFNNS 139 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n--~l~g~ip~~~~~~~~~l--~~L~~L~ls~N~l~g~ 139 (167)
...|.+++|++|++.++... .+.-...++|..|+|++| .+... .+ +..+ ..|+.|-+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~---sslsq~apklk~L~LS~N~~~~~~~--~e----l~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDAL---SSLSQIAPKLKTLDLSHNHSKISSE--SE----LDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeecccchhhchhhh---hHHHHhcchhheeecccchhhhcch--hh----hhhhcCCCHHHeeecCCccccc
Confidence 56789999999988765432 122234688999999999 43321 11 2222 3478899999988653
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.04 E-value=5 Score=34.18 Aligned_cols=65 Identities=28% Similarity=0.231 Sum_probs=40.8
Q ss_pred CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCC--cCCchhhHhhhc--CCCCCEEECcCCccee
Q 043924 94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN--LFNNSILSSVAH--LSSLTSLYLYSNRLEG 162 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N--~l~g~iP~~l~~--l~~L~~L~L~~N~lsG 162 (167)
+.+.+..+.|++|++.- +... -.--...+.|..|+|++| .+.. -.++.+ ...|+.|-+.+|.+.-
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld~~-sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LDAL-SSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhc-hhhh-hHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 46778889999999862 2110 000133478999999999 4432 122222 2348899999998764
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.21 E-value=3.6 Score=30.66 Aligned_cols=81 Identities=23% Similarity=0.194 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccC-CCCCCCEEeCcCC-cCCchhhHhhh
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS-RLSNLKMLDLSEN-LFNNSILSSVA 145 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~-~l~~L~~L~ls~N-~l~g~iP~~l~ 145 (167)
.|..+|-++..+...+- ..+.+++.++.|.+.++.--+..- .+.++ -.++|+.|+++++ +||..=-..+.
T Consensus 102 ~IeaVDAsds~I~~eGl-----e~L~~l~~i~~l~l~~ck~~dD~~---L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-----EHLRDLRSIKSLSLANCKYFDDWC---LERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHH-----HHHhccchhhhheeccccchhhHH---HHHhcccccchheeeccCCCeechhHHHHHH
Confidence 35666665554432211 123446666666665554321100 00011 2356778888765 45543334566
Q ss_pred cCCCCCEEECc
Q 043924 146 HLSSLTSLYLY 156 (167)
Q Consensus 146 ~l~~L~~L~L~ 156 (167)
++++|+.|.+.
T Consensus 174 ~lknLr~L~l~ 184 (221)
T KOG3864|consen 174 KLKNLRRLHLY 184 (221)
T ss_pred HhhhhHHHHhc
Confidence 67777766654
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.37 E-value=12 Score=37.85 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=25.2
Q ss_pred EcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee
Q 043924 73 DLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC 111 (167)
Q Consensus 73 ~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ 111 (167)
||++|+|..+. ...|..+++|+.|+|++|.+.-.
T Consensus 1 DLSnN~LstLp-----~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIE-----EGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccC-----hHHhccCCCceEEEeeCCccccc
Confidence 57788877543 45677788999999999887643
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=42.55 E-value=2.1 Score=35.98 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=19.8
Q ss_pred CCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924 124 SNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 124 ~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls 161 (167)
..+++++++.|.|+.. +...+..++.++.+.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4455556666655432 3334445555555666555543
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=41.72 E-value=18 Score=29.42 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCCCCEEeCcCCc-CCch-hhHhhhcCCCCCEEECcCC
Q 043924 123 LSNLKMLDLSENL-FNNS-ILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 123 l~~L~~L~ls~N~-l~g~-iP~~l~~l~~L~~L~L~~N 158 (167)
+++|++|.+.+.. ++.. +-.....+++|++|+++..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 5566666655444 3321 2222345666777776644
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.87 E-value=27 Score=16.23 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=7.1
Q ss_pred CCCCEEECcCC
Q 043924 148 SSLTSLYLYSN 158 (167)
Q Consensus 148 ~~L~~L~L~~N 158 (167)
++|+.|+|++.
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 56667766665
No 88
>PF15240 Pro-rich: Proline-rich
Probab=32.82 E-value=19 Score=26.06 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.6
Q ss_pred CCCCCCHHH
Q 043924 16 GSEGCLDQE 24 (167)
Q Consensus 16 ~~~~~~~~~ 24 (167)
++|...++|
T Consensus 14 SSAQ~~dEd 22 (179)
T PF15240_consen 14 SSAQSTDED 22 (179)
T ss_pred hhccccccc
Confidence 344444443
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.49 E-value=47 Score=34.06 Aligned_cols=32 Identities=34% Similarity=0.466 Sum_probs=23.2
Q ss_pred EcCCCceeeecCcccccccCCCCCCCEEeCcCCcCC
Q 043924 102 YLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN 137 (167)
Q Consensus 102 ~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~ 137 (167)
||++|+|+ .||.. .|..+++|+.|+|++|.|.
T Consensus 1 DLSnN~Ls-tLp~g---~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEG---ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChH---HhccCCCceEEEeeCCccc
Confidence 57788887 45543 2777888888888888664
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.70 E-value=46 Score=16.04 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=10.6
Q ss_pred hhhcCCCCCEEECcC
Q 043924 143 SVAHLSSLTSLYLYS 157 (167)
Q Consensus 143 ~l~~l~~L~~L~L~~ 157 (167)
.+..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 356788888888643
Done!